Citrus Sinensis ID: 026345

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MKSKAYPLAKLPHPLLSPHRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWNDII
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHccccHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEccEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHcHHHHHHHHHHHHHHHcHHHccccHHHcccccccccccHHHHHHHHHHHHHHHccccEEcccEEEEEcEccccccccccccEEEccccEEEEEEccccccccccccccEEEEEEcccccccccHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHEEEEEEccccccHHHHHHHHHHHcccccHHHcc
Coil and Loop (DISEMBL)
mkskayplaklphpllsphRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLdslatlnypawdmdldtnmaclnNSSLKMVRKKLQKvggenvmdvaydvpipgyktkttlnlRLWSTKVAaedfdlhafntgdhAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYegrlgepvnwenfpEKVAVQMndthptlcipDLIRILMDVKglswndii
Flexible Loop (DISEMBL)
mkskayplaklphpllSPHRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVmdvaydvpipgyktkttlNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWNDII
Low Complexity Region (SEG)
MKSKAYPLAKLPHPLLSPHRKALILVHGKALFPSllllteldaalGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWNDII
Disordered region (IsUnstruct)
**************LLSPHRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN***
Disordered Region (DISOPRED)
MKSKAYPLAKLPHPLLSPHRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWNDII
Disordered Region (DISEMBL)
MKSKAYPLAKLPHPLLSPHRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWNDII
Disordered Region (DISPRO)
***KAYPLAKLPHPLLSPHRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN*I*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKSKAYPLAKLPHPLLSPHRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWNDII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
P53535	974	Alpha-1,4 glucan phosphor	N/A	no	0.820	0.202	0.605	7e-75
P53536	1003	Alpha-1,4 glucan phosphor	N/A	no	0.829	0.198	0.591	5e-74
P27598	955	Alpha-1,4 glucan phosphor	N/A	no	0.829	0.208	0.578	7e-73
Q9LIB2	962	Alpha-glucan phosphorylas	yes	no	0.829	0.206	0.574	2e-71
P04045	966	Alpha-1,4 glucan phosphor	N/A	no	0.829	0.206	0.570	5e-70
P53537	842	Alpha-glucan phosphorylas	N/A	no	0.829	0.236	0.485	2e-55
Q9LKJ3	832	Alpha-glucan phosphorylas	N/A	no	0.829	0.239	0.476	2e-53
P32811	838	Alpha-glucan phosphorylas	N/A	no	0.829	0.237	0.459	1e-50
Q9SD76	841	Alpha-glucan phosphorylas	no	no	0.829	0.236	0.468	3e-50
Q00766	853	Glycogen phosphorylase 1	yes	no	0.829	0.233	0.409	1e-41

>sp|P53535|PHSL2_SOLTU Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum GN=STP-1 PE=1 SV=1

 Score =  280 bits (716), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 141/233 (60%), Positives = 159/233 (68%), Gaps = 36/233 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNN----------------- 82
           E DAALGNGGL RLASCFLDS+ATLNYPAW   L                          
Sbjct: 181 EPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYQYGLFKQLITKDGQEEVAENWLEM 240

Query: 83  -SSLKMVRKKL------------------QKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
            +  ++VR  +                  +  GGE++  VAYDVPIPGYKTKTT+NLRLW
Sbjct: 241 GNPWEIVRNDISYPVKFYGKVIEGADGRKEWAGGEDITAVAYDVPIPGYKTKTTINLRLW 300

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           +TK+AAE FDL+AFN GDHAKAY A    EKICYVLYPGDE +  KTLRLKQQYTLCSAS
Sbjct: 301 TTKLAAEAFDLYAFNNGDHAKAYEAQKKAEKICYVLYPGDESLEGKTLRLKQQYTLCSAS 360

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSW 236
           +QDII R+E R G  VNW+ FPEKVAVQMNDTHPTLCIP+L+RILMDVKGLSW
Sbjct: 361 LQDIIARFEKRSGNAVNWDQFPEKVAVQMNDTHPTLCIPELLRILMDVKGLSW 413

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
Solanum tuberosum (taxid: 4113)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1

>sp|P53536|PHSL_VICFA Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Vicia faba GN=PHO1 PE=2 SV=2

 Score =  277 bits (708), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 139/235 (59%), Positives = 160/235 (68%), Gaps = 36/235 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLK------------- 86
           E DAALGNGGL RLASCFLDSLATLNYPAW   L            K             
Sbjct: 196 EPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLEM 255

Query: 87  -----MVRK------------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
                +VR                   K   VGGE++  VA+DVPIPGYKT++T+NLRLW
Sbjct: 256 GNPWEIVRNDVSYPVRFYGKVVSGSDGKKHWVGGEDIKAVAHDVPIPGYKTRSTINLRLW 315

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           STK A+E+FDL+AFN+G H +A  A+ N EKICY+LYPGDE I  KTLRLKQQYTLCSAS
Sbjct: 316 STKAASEEFDLNAFNSGRHTEASEALANAEKICYILYPGDESIEGKTLRLKQQYTLCSAS 375

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDII R+E R G  VNWE+FPEKVAVQMNDTHPTLCIP+L+RIL+D+KGLSW D
Sbjct: 376 LQDIIARFERRSGASVNWEDFPEKVAVQMNDTHPTLCIPELMRILIDIKGLSWKD 430

The L isoform exhibits higher affinity for unbranched substrates such as glucan-like amylose and maltodextrin.

Vicia faba (taxid: 3906)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P27598|PHSL_IPOBA Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Ipomoea batatas PE=2 SV=1

 Score =  273 bits (699), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 136/235 (57%), Positives = 159/235 (67%), Gaps = 36/235 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQK----- 94
           E DAALGNGGL RLASCFLDSLATLNYPAW   L            K  ++++ +     
Sbjct: 171 EPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLEL 230

Query: 95  -------------------------------VGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
                                          +GGE+++ VAYDVPIPGYKT+TT++LRLW
Sbjct: 231 GNPWEIIRMDVSYPVKFFGKVITGSDGKKHWIGGEDILAVAYDVPIPGYKTRTTISLRLW 290

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           STKV +EDFDL++FN G+H KA  A  N EKICY+LYPGDE I  K LRLKQQYTLCSAS
Sbjct: 291 STKVPSEDFDLYSFNAGEHTKACEAQANAEKICYILYPGDESIEGKILRLKQQYTLCSAS 350

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDII R+E R GE V WE FPEKVAVQMNDTHPTLCIP+LIRIL+D+KGLSW +
Sbjct: 351 LQDIIARFERRSGEYVKWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKE 405

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Ipomoea batatas (taxid: 4120)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9LIB2|PHS1_ARATH Alpha-glucan phosphorylase 1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1

 Score =  269 bits (687), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 135/235 (57%), Positives = 156/235 (66%), Gaps = 36/235 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLK------------- 86
           E D ALGNGGL RLASCFLDS+ATLNYPAW   L            K             
Sbjct: 195 EPDPALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEAAEDWLEL 254

Query: 87  -----MVRK------------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
                +VR                   K + +GGE+++ VAYDVPIPGYKTKTT+NLRLW
Sbjct: 255 SNPWEIVRNDVSYPIKFYGKVVFGSDGKKRWIGGEDIVAVAYDVPIPGYKTKTTINLRLW 314

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           STK  +EDFDL ++N+G H +A  A+ N EKIC+VLYPGDE    K LRLKQQYTLCSAS
Sbjct: 315 STKAPSEDFDLSSYNSGKHTEAAEALFNAEKICFVLYPGDESTEGKALRLKQQYTLCSAS 374

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDI+ R+E R G  VNWE FPEKVAVQMNDTHPTLCIP+L+RILMD+KGLSW D
Sbjct: 375 LQDIVARFETRSGGNVNWEEFPEKVAVQMNDTHPTLCIPELMRILMDLKGLSWED 429

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity). May be not required for the degradation of starch, but the phosphorolysis of starch may play an important role in water stress tolerance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P04045|PHSL1_SOLTU Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2

 Score =  264 bits (674), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 134/235 (57%), Positives = 156/235 (66%), Gaps = 36/235 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNN----------------- 82
           E DAALGNGGL RLASCFLDSLATLNYPAW   L                          
Sbjct: 178 EPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLEI 237

Query: 83  -SSLKMVRK------------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
            S  ++VR                   K   +GGE++  VAYDVPIPGYKT+TT++LRLW
Sbjct: 238 GSPWEVVRNDVSYPIKFYGKVSTGSDGKRYWIGGEDIKAVAYDVPIPGYKTRTTISLRLW 297

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           ST+V + DFDL AFN G+H KA  A  N EKICY+LYPGDE    K LRLKQQYTLCSAS
Sbjct: 298 STQVPSADFDLSAFNAGEHTKACEAQANAEKICYILYPGDESEEGKILRLKQQYTLCSAS 357

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDII R+E R G+ + WE FPEKVAVQMNDTHPTLCIP+L+RIL+D+KGL+WN+
Sbjct: 358 LQDIISRFERRSGDRIKWEEFPEKVAVQMNDTHPTLCIPELMRILIDLKGLNWNE 412

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P53537|PHSH_VICFA Alpha-glucan phosphorylase, H isozyme OS=Vicia faba PE=2 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 114/235 (48%), Positives = 138/235 (58%), Gaps = 36/235 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNN----------------- 82
           E DAALGNGGL RLASCFLDS+ATLN PAW   L                          
Sbjct: 132 EKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQIITKEGQEEVAEDWLEK 191

Query: 83  -SSLKMVRKKL------------------QKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
            S  ++VR  +                  Q +GGE +  +AYDVPIPGY+TK T++LRLW
Sbjct: 192 FSPWEIVRHDVLYPIRFFGQVEVNPDGSRQWIGGEVIQALAYDVPIPGYQTKNTISLRLW 251

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
             K  A+DFDL  FN G    A    +  ++IC VLYPGD     K LRLKQQY LCSAS
Sbjct: 252 EAKACADDFDLFLFNDGQLESASVLHSRAQQICSVLYPGDATEGGKLLRLKQQYFLCSAS 311

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDII R++ R   P NW  FP KVAVQ+NDTHPTL IP+L+R+LMD +GL W++
Sbjct: 312 LQDIISRFKERRQGPWNWSEFPTKVAVQLNDTHPTLSIPELMRLLMDDEGLGWDE 366

The H isoform exhibits higher affinity for branched polyglucans such as soluble starch or glycogen.

Vicia faba (taxid: 3906)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9LKJ3|PHSH_WHEAT Alpha-glucan phosphorylase, H isozyme OS=Triticum aestivum PE=2 SV=1

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/237 (47%), Positives = 138/237 (58%), Gaps = 38/237 (16%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNN----------------- 82
           E DAALGNGGL RLASCFLDS+ATLN P+W   L                          
Sbjct: 120 ERDAALGNGGLGRLASCFLDSMATLNLPSWGYGLRYRYGLFKQRIAKEGQEEIAEDWLDK 179

Query: 83  -SSLKMVRK------------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
            S  ++VR                   K +  GGE +  +AYDVPIPGYKTK  ++LRLW
Sbjct: 180 FSPWEIVRHDVVYPIRFFGHVEISPDGKRKWAGGEVLNALAYDVPIPGYKTKNAISLRLW 239

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
                AEDF+L  FN G +  A    +  ++IC VLYPGD     K LRLKQQY LCSAS
Sbjct: 240 DATATAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDATEEGKLLRLKQQYFLCSAS 299

Query: 184 VQDIIVRYEGRLGEPVN--WENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDII R++ R  + V+  W  FP KVAVQMNDTHPTL IP+L+R+LMDV+GL W++
Sbjct: 300 LQDIIFRFKERKADRVSGKWSEFPSKVAVQMNDTHPTLAIPELMRLLMDVEGLGWDE 356

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Triticum aestivum (taxid: 4565)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P32811|PHSH_SOLTU Alpha-glucan phosphorylase, H isozyme OS=Solanum tuberosum PE=1 SV=1

 Score =  199 bits (507), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 139/237 (58%), Gaps = 38/237 (16%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNN----------------- 82
           E DAALGNGGL RLASCFLDS+ATLN PAW   L                          
Sbjct: 126 EKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQLITKAGQEEVPEDWLEK 185

Query: 83  -SSLKMVRKKL------------------QKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
            S  ++VR  +                  + VGGE +  +AYDVPIPGY+TK T +LRLW
Sbjct: 186 FSPWEIVRHDVVFPIRFFGHVEVLPSGSRKWVGGEVLQALAYDVPIPGYRTKNTNSLRLW 245

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
             K ++EDF+L  FN G +  A    +  ++IC VLYPGD     K LRLKQQ+ LCSAS
Sbjct: 246 EAKASSEDFNLFLFNDGQYDAAAQLHSRAQQICAVLYPGDATENGKLLRLKQQFFLCSAS 305

Query: 184 VQDIIVRYEGRLGEPVN--WENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDII R++ R     +  W  FP+KVA+Q+NDTHPTL IP+L+R+LMD +GL W++
Sbjct: 306 LQDIIARFKEREDGKGSHQWSEFPKKVAIQLNDTHPTLTIPELMRLLMDDEGLGWDE 362

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SD76|PHS2_ARATH Alpha-glucan phosphorylase 2, cytosolic OS=Arabidopsis thaliana GN=PHS2 PE=2 SV=1

 Score =  198 bits (503), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/237 (46%), Positives = 134/237 (56%), Gaps = 38/237 (16%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNN----------------- 82
           E DAALGNGGL RLASCFLDS+ATLN PAW   L                          
Sbjct: 129 EKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRHGLFKQIITKKGQEEIPEDWLEK 188

Query: 83  -SSLKMVRKKL------------------QKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
            S  ++VR  +                  + V G+ V  +AYDVPIPGY TK T++LRLW
Sbjct: 189 FSPWEIVRHDVVFPVRFFGKVQVNPDGSRKWVDGDVVQALAYDVPIPGYGTKNTISLRLW 248

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
             K  AED DL  FN G++  A    +  ++IC VLYPGD     K LRLKQQ+ LCSAS
Sbjct: 249 EAKARAEDLDLFQFNEGEYELAAQLHSRAQQICTVLYPGDATENGKLLRLKQQFFLCSAS 308

Query: 184 VQDIIVRYEGRLGEPVN--WENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDII R+  R     +  W  FP KVAVQMNDTHPTL IP+L+R+LMD  GL W++
Sbjct: 309 LQDIISRFHERSTTEGSRKWSEFPSKVAVQMNDTHPTLAIPELMRLLMDDNGLGWDE 365

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q00766|PHS1_DICDI Glycogen phosphorylase 1 OS=Dictyostelium discoideum GN=glpV PE=1 SV=3

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/242 (40%), Positives = 125/242 (51%), Gaps = 43/242 (17%)

Query: 36  LLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLK--------- 86
           L   E DAALGNGGL RLA+CF+DSLATL YPAW   L  N                   
Sbjct: 139 LYEEEKDAALGNGGLGRLAACFMDSLATLKYPAWGYGLRYNYGMFEQGIYDGYQTEVPDY 198

Query: 87  -----------------MVR-------------KKLQKVGGENVMDVAYDVPIPGYKTKT 116
                             VR              K +   GE V  +AYD P+PGY T  
Sbjct: 199 WLVAGNPWEIERLDVQYTVRFYGQVTEKKSSDGSKFEWDHGELVQAIAYDTPVPGYHTTN 258

Query: 117 TLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQ 176
           T N+RLWS+K   E FDL AFN G++  A  A    E I  VLYP D   + K LRLKQQ
Sbjct: 259 TNNIRLWSSKPHKE-FDLDAFNGGNYLSAVEAKQRSENITSVLYPNDNTYSGKELRLKQQ 317

Query: 177 YTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSW 236
           Y   +A++ D+I R++       NW++FP KVA+Q+NDTHPT+ + +L R L+D +GL W
Sbjct: 318 YFFVAATLCDVIRRFKK---SHQNWQDFPNKVAIQLNDTHPTIGVVELFRKLIDEEGLQW 374

Query: 237 ND 238
            +
Sbjct: 375 EE 376

May provide energy to overcome environmental stresses.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
255542088	973	glycogen phosphorylase, putative [Ricinu	0.825	0.203	0.636	5e-77
359472806	1012	PREDICTED: alpha-1,4 glucan phosphorylas	0.829	0.196	0.638	1e-75
297738066	933	unnamed protein product [Vitis vinifera]	0.829	0.213	0.629	2e-75
357475007	885	Phosphorylase [Medicago truncatula] gi|3	0.820	0.222	0.605	7e-74
449478635	995	PREDICTED: LOW QUALITY PROTEIN: alpha-1,	0.829	0.2	0.6	1e-73
449435314	878	PREDICTED: alpha-1,4 glucan phosphorylas	0.829	0.226	0.6	2e-73
224112148	953	predicted protein [Populus trichocarpa]	0.829	0.208	0.604	2e-73
1730557	974	RecName: Full=Alpha-1,4 glucan phosphory	0.820	0.202	0.605	4e-73
356577161	978	PREDICTED: alpha-1,4 glucan phosphorylas	0.820	0.201	0.600	6e-73
2506470	1003	RecName: Full=Alpha-1,4 glucan phosphory	0.829	0.198	0.591	3e-72

>gi|255542088|ref|XP_002512108.1| glycogen phosphorylase, putative [Ricinus communis] gi|223549288|gb|EEF50777.1| glycogen phosphorylase, putative [Ricinus communis]

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 149/234 (63%), Positives = 166/234 (70%), Gaps = 36/234 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNN------------SSLKM 87
           E DAALGNGGL RLASCFLDSLATLNYPAW   L                     S L+M
Sbjct: 181 EPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKDGQEEVAESWLEM 240

Query: 88  ------VRKKL------------------QKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
                 VR  +                  + +GGEN++ VAYDVPIPGYKTKTT+NLRLW
Sbjct: 241 GNPWEIVRNDVSYPVKFYGKVILKPDGSKEWIGGENILAVAYDVPIPGYKTKTTINLRLW 300

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           STKV+ ++FDL AFNTGDHAKAYAA+ N EKICY+LYPGDE I  KTLRLKQQYTLCSAS
Sbjct: 301 STKVSPQEFDLSAFNTGDHAKAYAAVKNAEKICYILYPGDESIEGKTLRLKQQYTLCSAS 360

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
           +QDII  +E R GE V WENFP+KVAVQMNDTHPTLCIP+LIRILMDVKGLSW+
Sbjct: 361 LQDIIAHFERRSGEAVKWENFPDKVAVQMNDTHPTLCIPELIRILMDVKGLSWD 414

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472806|ref|XP_002274575.2| PREDICTED: alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic-like [Vitis vinifera]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 150/235 (63%), Positives = 165/235 (70%), Gaps = 36/235 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDL-------------DTNMACLNN---- 82
           E DAALGNGGL RLASCFLDSLATLNYPAW   L             D       N    
Sbjct: 237 EPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKDGQEEVAENWLEM 296

Query: 83  -SSLKMVRK------------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
            +  ++VR                   K + +GGE++  VAYDVPIPGYKTKTT+NLRLW
Sbjct: 297 GNPWEIVRNDVSYPVKFYGKVIEGPDGKKEWIGGEDITAVAYDVPIPGYKTKTTINLRLW 356

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           STK+A+E FDL AFNTGDHAKA  A  + EKICYVLYPGDE I  KTLRLKQQYTLCSAS
Sbjct: 357 STKLASEAFDLQAFNTGDHAKANKAQKDAEKICYVLYPGDESIEGKTLRLKQQYTLCSAS 416

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDII R+E R G PVNWENFPEKVAVQMNDTHPTLCIP+LIRILMDVKGLSW +
Sbjct: 417 LQDIIRRFERRSGGPVNWENFPEKVAVQMNDTHPTLCIPELIRILMDVKGLSWKE 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738066|emb|CBI27267.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 148/235 (62%), Positives = 163/235 (69%), Gaps = 36/235 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNN----------------- 82
           E DAALGNGGL RLASCFLDSLATLNYPAW   L                          
Sbjct: 185 EPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKDGQEEVAENWLEM 244

Query: 83  -SSLKMVRK------------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
            +  ++VR                   K + +GGE++  VAYDVPIPGYKTKTT+NLRLW
Sbjct: 245 GNPWEIVRNDVSYPVKFYGKVIEGPDGKKEWIGGEDITAVAYDVPIPGYKTKTTINLRLW 304

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           STK+A+E FDL AFNTGDHAKA  A  + EKICYVLYPGDE I  KTLRLKQQYTLCSAS
Sbjct: 305 STKLASEAFDLQAFNTGDHAKANKAQKDAEKICYVLYPGDESIEGKTLRLKQQYTLCSAS 364

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDII R+E R G PVNWENFPEKVAVQMNDTHPTLCIP+LIRILMDVKGLSW +
Sbjct: 365 LQDIIRRFERRSGGPVNWENFPEKVAVQMNDTHPTLCIPELIRILMDVKGLSWKE 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475007|ref|XP_003607789.1| Phosphorylase [Medicago truncatula] gi|355508844|gb|AES89986.1| Phosphorylase [Medicago truncatula]

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 141/233 (60%), Positives = 161/233 (69%), Gaps = 36/233 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKL------- 92
           E DAALGNGGL RLASCFLDSLATLNYPAW   L            K  ++++       
Sbjct: 185 EPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYRYGLFKQRITKDGQEEVAENWLEM 244

Query: 93  -----------------------------QKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
                                        Q  GGE+++ VAYDVPIPGYKT+TT+NLRLW
Sbjct: 245 GNPWEIQRNDVSYPVRFYGEVISGPNEAKQWTGGESILAVAYDVPIPGYKTRTTINLRLW 304

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           STKV+ E+FDL AFNTGDHAKAYAA+ N EKICY+LYPGDE I  KTLRLKQQYTLCSAS
Sbjct: 305 STKVSTEEFDLKAFNTGDHAKAYAAMKNAEKICYILYPGDESIEGKTLRLKQQYTLCSAS 364

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSW 236
           +QDII R+E R G  VNW++ P+KV VQMNDTHPTLCIP+LIRIL+DVKGLSW
Sbjct: 365 LQDIIARFEKRSGMTVNWDSLPDKVVVQMNDTHPTLCIPELIRILIDVKGLSW 417

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478635|ref|XP_004155376.1| PREDICTED: LOW QUALITY PROTEIN: alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic-like [Cucumis sativus]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 141/235 (60%), Positives = 161/235 (68%), Gaps = 36/235 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKL------- 92
           E DAALGNGGL RLASCFLDSLATLNYPAW   L            K  ++++       
Sbjct: 204 ESDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKNGQEEVAENWLEM 263

Query: 93  -----------------------------QKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
                                        Q VGGEN+  VAYDVPIPGYKTKTT+NLRLW
Sbjct: 264 GNPWEIARNDISYPVKFYGEVISGADGSKQWVGGENITAVAYDVPIPGYKTKTTINLRLW 323

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           STKVA E+FDL +FN G+HA AYAAI   EKICYVLYPGD+ +  KTLRLKQQYTLCSAS
Sbjct: 324 STKVAPEEFDLSSFNVGNHADAYAAIKKAEKICYVLYPGDDSLEGKTLRLKQQYTLCSAS 383

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDI+ R+E R GE ++WE+FPEKVAVQMNDTHPTLCIP+LIRILMDVK L+W +
Sbjct: 384 LQDIVARFERRSGEALDWESFPEKVAVQMNDTHPTLCIPELIRILMDVKALTWKE 438

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435314|ref|XP_004135440.1| PREDICTED: alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic-like [Cucumis sativus]

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 141/235 (60%), Positives = 161/235 (68%), Gaps = 36/235 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKL------- 92
           E DAALGNGGL RLASCFLDSLATLNYPAW   L            K  ++++       
Sbjct: 131 ESDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKNGQEEVAENWLEM 190

Query: 93  -----------------------------QKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
                                        Q VGGEN+  VAYDVPIPGYKTKTT+NLRLW
Sbjct: 191 GNPWEIARNDISYPVKFYGEVISGADGSKQWVGGENITAVAYDVPIPGYKTKTTINLRLW 250

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           STKVA E+FDL +FN G+HA AYAAI   EKICYVLYPGD+ +  KTLRLKQQYTLCSAS
Sbjct: 251 STKVAPEEFDLSSFNVGNHADAYAAIKKAEKICYVLYPGDDSLEGKTLRLKQQYTLCSAS 310

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDI+ R+E R GE ++WE+FPEKVAVQMNDTHPTLCIP+LIRILMDVK L+W +
Sbjct: 311 LQDIVARFERRSGEALDWESFPEKVAVQMNDTHPTLCIPELIRILMDVKALTWKE 365

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112148|ref|XP_002316098.1| predicted protein [Populus trichocarpa] gi|222865138|gb|EEF02269.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 142/235 (60%), Positives = 161/235 (68%), Gaps = 36/235 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLN------------------ 81
           E DAALGNGGL RLASCFLDSLATLNYPAW   L                          
Sbjct: 176 EPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKDGQEEVAENWLEM 235

Query: 82  -----------NSSLKMVRKKLQK-------VGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
                      + S+K   + + K       +GGEN+  VAYDVPIPGYKTKTT+NLRLW
Sbjct: 236 GNPWEIVRNDVSYSVKFYGEVISKPDGSKEWIGGENITAVAYDVPIPGYKTKTTINLRLW 295

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           STKVA  +FDL A+N GDHAKA AA+ N EKICY+LYPGDE    K LRLKQQYTLCSAS
Sbjct: 296 STKVAPNEFDLRAYNAGDHAKACAALKNAEKICYILYPGDESTEGKILRLKQQYTLCSAS 355

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDII  +E R G+PVNWENFP+KVAVQMNDTHPTLCIP+LIRIL+D+KGLSW +
Sbjct: 356 LQDIIAHFERRSGKPVNWENFPDKVAVQMNDTHPTLCIPELIRILIDLKGLSWKE 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1730557|sp|P53535.1|PHSL2_SOLTU RecName: Full=Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic; AltName: Full=Starch phosphorylase L-2; Flags: Precursor gi|313349|emb|CAA52036.1| starch phosphorylase [Solanum tuberosum]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 141/233 (60%), Positives = 159/233 (68%), Gaps = 36/233 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNN----------------- 82
           E DAALGNGGL RLASCFLDS+ATLNYPAW   L                          
Sbjct: 181 EPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYQYGLFKQLITKDGQEEVAENWLEM 240

Query: 83  -SSLKMVRKKL------------------QKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
            +  ++VR  +                  +  GGE++  VAYDVPIPGYKTKTT+NLRLW
Sbjct: 241 GNPWEIVRNDISYPVKFYGKVIEGADGRKEWAGGEDITAVAYDVPIPGYKTKTTINLRLW 300

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           +TK+AAE FDL+AFN GDHAKAY A    EKICYVLYPGDE +  KTLRLKQQYTLCSAS
Sbjct: 301 TTKLAAEAFDLYAFNNGDHAKAYEAQKKAEKICYVLYPGDESLEGKTLRLKQQYTLCSAS 360

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSW 236
           +QDII R+E R G  VNW+ FPEKVAVQMNDTHPTLCIP+L+RILMDVKGLSW
Sbjct: 361 LQDIIARFEKRSGNAVNWDQFPEKVAVQMNDTHPTLCIPELLRILMDVKGLSW 413

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577161|ref|XP_003556696.1| PREDICTED: alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic-like [Glycine max]

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 140/233 (60%), Positives = 160/233 (68%), Gaps = 36/233 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKL------- 92
           E DAALGNGGL RLASCFLDSLATLNYPAW   L            K  + ++       
Sbjct: 184 EPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQHITKDGQVEVAENWLEM 243

Query: 93  -----------------------------QKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
                                        Q VGGEN++ VAYDVPIPGYKT+TT+NLRLW
Sbjct: 244 GNPWEILKNDVSYPVKFYGEVISGPNGSKQWVGGENILAVAYDVPIPGYKTRTTINLRLW 303

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           STKV+ E+FDL A+N+GDHAKAYA + N EKICYVLYPGDE I  KTLRLKQQYTLCSAS
Sbjct: 304 STKVSPEEFDLQAYNSGDHAKAYAVMKNAEKICYVLYPGDESIDGKTLRLKQQYTLCSAS 363

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSW 236
           +QDI  R+E RLG+ VNW+  P+KV VQMNDTHPTLCIP++IRIL+DVKGLSW
Sbjct: 364 LQDIFARFERRLGKRVNWDTLPDKVVVQMNDTHPTLCIPEIIRILVDVKGLSW 416

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2506470|sp|P53536.2|PHSL_VICFA RecName: Full=Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic; AltName: Full=Starch phosphorylase L; Flags: Precursor gi|1616637|emb|CAA85354.1| alpha-1,4 glucan phosphorylase, L isoform precursor [Vicia faba var. minor]

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 139/235 (59%), Positives = 160/235 (68%), Gaps = 36/235 (15%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLK------------- 86
           E DAALGNGGL RLASCFLDSLATLNYPAW   L            K             
Sbjct: 196 EPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLEM 255

Query: 87  -----MVRK------------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
                +VR                   K   VGGE++  VA+DVPIPGYKT++T+NLRLW
Sbjct: 256 GNPWEIVRNDVSYPVRFYGKVVSGSDGKKHWVGGEDIKAVAHDVPIPGYKTRSTINLRLW 315

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
           STK A+E+FDL+AFN+G H +A  A+ N EKICY+LYPGDE I  KTLRLKQQYTLCSAS
Sbjct: 316 STKAASEEFDLNAFNSGRHTEASEALANAEKICYILYPGDESIEGKTLRLKQQYTLCSAS 375

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +QDII R+E R G  VNWE+FPEKVAVQMNDTHPTLCIP+L+RIL+D+KGLSW D
Sbjct: 376 LQDIIARFERRSGASVNWEDFPEKVAVQMNDTHPTLCIPELMRILIDIKGLSWKD 430

Source: Vicia faba var. minor

Species: Vicia faba

Genus: Vicia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
UNIPROTKB|P53535	974	STP-1 "Alpha-1,4 glucan phosph	0.587	0.144	0.787	2.1e-68
TAIR|locus:2093787	962	PHS1 "alpha-glucan phosphoryla	0.616	0.153	0.709	1.2e-65
UNIPROTKB|P04045	966	P04045 "Alpha-1,4 glucan phosp	0.6	0.149	0.701	2.1e-53
TAIR|locus:2075576	841	PHS2 "alpha-glucan phosphoryla	0.6	0.171	0.554	2.7e-46
ASPGD|ASPL0000059322	879	AN1015 [Emericella nidulans (t	0.575	0.156	0.539	4.1e-44
UNIPROTKB|G4MW66	888	MGG_01819 "Phosphorylase" [Mag	0.587	0.158	0.506	1.1e-42
CGD|CAL0001970	900	GPH1 [Candida albicans (taxid:	0.583	0.155	0.489	6e-39
UNIPROTKB|Q5AFP7	900	GPH1 "Phosphorylase" [Candida	0.583	0.155	0.489	6e-39
DICTYBASE|DDB_G0281383	853	glpV "glycogen phosphorylase b	0.575	0.161	0.478	9e-39
SGD|S000006364	902	GPH1 "Glycogen phosphorylase r	0.591	0.157	0.472	1e-38

UNIPROTKB|P53535 STP-1 "Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic" [Solanum tuberosum (taxid:4113)]

 Score = 602 (217.0 bits), Expect = 2.1e-68, Sum P(2) = 2.1e-68
 Identities = 111/141 (78%), Positives = 123/141 (87%)

Query:    96 GGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKI 155
             GGE++  VAYDVPIPGYKTKTT+NLRLW+TK+AAE FDL+AFN GDHAKAY A    EKI
Sbjct:   273 GGEDITAVAYDVPIPGYKTKTTINLRLWTTKLAAEAFDLYAFNNGDHAKAYEAQKKAEKI 332

Query:   156 CYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDT 215
             CYVLYPGDE +  KTLRLKQQYTLCSAS+QDII R+E R G  VNW+ FPEKVAVQMNDT
Sbjct:   333 CYVLYPGDESLEGKTLRLKQQYTLCSASLQDIIARFEKRSGNAVNWDQFPEKVAVQMNDT 392

Query:   216 HPTLCIPDLIRILMDVKGLSW 236
             HPTLCIP+L+RILMDVKGLSW
Sbjct:   393 HPTLCIPELLRILMDVKGLSW 413

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2093787 PHS1 "alpha-glucan phosphorylase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 1.2e-65, Sum P(2) = 1.2e-65
 Identities = 105/148 (70%), Positives = 124/148 (83%)

Query:    91 KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAIT 150
             K + +GGE+++ VAYDVPIPGYKTKTT+NLRLWSTK  +EDFDL ++N+G H +A  A+ 
Sbjct:   282 KKRWIGGEDIVAVAYDVPIPGYKTKTTINLRLWSTKAPSEDFDLSSYNSGKHTEAAEALF 341

Query:   151 NVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAV 210
             N EKIC+VLYPGDE    K LRLKQQYTLCSAS+QDI+ R+E R G  VNWE FPEKVAV
Sbjct:   342 NAEKICFVLYPGDESTEGKALRLKQQYTLCSASLQDIVARFETRSGGNVNWEEFPEKVAV 401

Query:   211 QMNDTHPTLCIPDLIRILMDVKGLSWND 238
             QMNDTHPTLCIP+L+RILMD+KGLSW D
Sbjct:   402 QMNDTHPTLCIPELMRILMDLKGLSWED 429

GO:0004645 "phosphorylase activity" evidence=IEA;ISS;IMP

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009536 "plastid" evidence=TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IEP

GO:0005829 "cytosol" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

UNIPROTKB|P04045 P04045 "Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic" [Solanum tuberosum (taxid:4113)]

 Score = 560 (202.2 bits), Expect = 2.1e-53, P = 2.1e-53
 Identities = 101/144 (70%), Positives = 121/144 (84%)

Query:    95 VGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEK 154
             +GGE++  VAYDVPIPGYKT+TT++LRLWST+V + DFDL AFN G+H KA  A  N EK
Sbjct:   269 IGGEDIKAVAYDVPIPGYKTRTTISLRLWSTQVPSADFDLSAFNAGEHTKACEAQANAEK 328

Query:   155 ICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMND 214
             ICY+LYPGDE    K LRLKQQYTLCSAS+QDII R+E R G+ + WE FPEKVAVQMND
Sbjct:   329 ICYILYPGDESEEGKILRLKQQYTLCSASLQDIISRFERRSGDRIKWEEFPEKVAVQMND 388

Query:   215 THPTLCIPDLIRILMDVKGLSWND 238
             THPTLCIP+L+RIL+D+KGL+WN+
Sbjct:   389 THPTLCIPELMRILIDLKGLNWNE 412

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2075576 PHS2 "alpha-glucan phosphorylase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 2.7e-46, Sum P(2) = 2.7e-46
 Identities = 81/146 (55%), Positives = 99/146 (67%)

Query:    95 VGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEK 154
             V G+ V  +AYDVPIPGY TK T++LRLW  K  AED DL  FN G++  A    +  ++
Sbjct:   220 VDGDVVQALAYDVPIPGYGTKNTISLRLWEAKARAEDLDLFQFNEGEYELAAQLHSRAQQ 279

Query:   155 ICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVN--WENFPEKVAVQM 212
             IC VLYPGD     K LRLKQQ+ LCSAS+QDII R+  R     +  W  FP KVAVQM
Sbjct:   280 ICTVLYPGDATENGKLLRLKQQFFLCSASLQDIISRFHERSTTEGSRKWSEFPSKVAVQM 339

Query:   213 NDTHPTLCIPDLIRILMDVKGLSWND 238
             NDTHPTL IP+L+R+LMD  GL W++
Sbjct:   340 NDTHPTLAIPELMRLLMDDNGLGWDE 365

GO:0004645 "phosphorylase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0009414 "response to water deprivation" evidence=IMP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0019252 "starch biosynthetic process" evidence=RCA

ASPGD|ASPL0000059322 AN1015 [Emericella nidulans (taxid:162425)]

 Score = 385 (140.6 bits), Expect = 4.1e-44, Sum P(2) = 4.1e-44
 Identities = 76/141 (53%), Positives = 96/141 (68%)

Query:    97 GENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKIC 156
             GE V  VAYDVPIPGY T+TT NLRLWS+K A+ +FD   FN GD+  A A     E I 
Sbjct:   268 GETVQAVAYDVPIPGYGTRTTNNLRLWSSKAASGEFDFQKFNAGDYESAVADQQRAETIS 327

Query:   157 YVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTH 216
              VLYP D     K LRLKQQY  C+AS+ DI+ R++ + G P  W  F ++VA+Q+NDTH
Sbjct:   328 AVLYPNDNLDRGKELRLKQQYFWCAASLHDIVRRFK-KTGRP--WSEFSDQVAIQLNDTH 384

Query:   217 PTLCIPDLIRILMDVKGLSWN 237
             PTL I +L RIL+D++GL W+
Sbjct:   385 PTLAIVELHRILIDIEGLDWD 405

GO:0005980 "glycogen catabolic process" evidence=IEA;RCA

GO:0004645 "phosphorylase activity" evidence=RCA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008184 "glycogen phosphorylase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|G4MW66 MGG_01819 "Phosphorylase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 370 (135.3 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 73/144 (50%), Positives = 96/144 (66%)

Query:    95 VGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEK 154
             VGGE V  +AYD+PIPGY T TT NLRLWS+K A+ +FD   FN+G++  + A     E 
Sbjct:   274 VGGETVTAIAYDMPIPGYATPTTNNLRLWSSKAASGEFDFQKFNSGEYESSVADQQRAET 333

Query:   155 ICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMND 214
             I  VLYP D     K LRLKQQY   +AS+ DI+ R++        W  FPE+VA+Q+ND
Sbjct:   334 ISAVLYPNDNLERGKELRLKQQYFWVAASLYDIVRRFKKSKRA---WREFPEQVAIQLND 390

Query:   215 THPTLCIPDLIRILMDVKGLSWND 238
             THPTL + +L RIL+D++GL W+D
Sbjct:   391 THPTLAVVELQRILIDLEGLDWDD 414

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0001970 GPH1 [Candida albicans (taxid:5476)]

 Score = 358 (131.1 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
 Identities = 70/143 (48%), Positives = 94/143 (65%)

Query:    96 GGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKI 155
             GGE V+ VA D PIPG+ T  T NLRLW+ K   E FD   FN GD+ ++ AA    E I
Sbjct:   272 GGERVLAVAADFPIPGFNTTNTNNLRLWNAKPTTE-FDFSKFNAGDYQQSVAAQQRAESI 330

Query:   156 CYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDT 215
               VLYP D +   K LRLKQQY   +AS+ DI+ R+  +     NW+ FP++VA+Q+NDT
Sbjct:   331 TSVLYPNDNFEKGKELRLKQQYFWVAASLHDIVRRF--KKNHKSNWQKFPDQVAIQLNDT 388

Query:   216 HPTLCIPDLIRILMDVKGLSWND 238
             HPTL + +L RIL+D++GL W++
Sbjct:   389 HPTLAVVELQRILVDLEGLDWDE 411

GO:0008184 "glycogen phosphorylase activity" evidence=NAS

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005980 "glycogen catabolic process" evidence=IEA

UNIPROTKB|Q5AFP7 GPH1 "Phosphorylase" [Candida albicans SC5314 (taxid:237561)]

 Score = 358 (131.1 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
 Identities = 70/143 (48%), Positives = 94/143 (65%)

Query:    96 GGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKI 155
             GGE V+ VA D PIPG+ T  T NLRLW+ K   E FD   FN GD+ ++ AA    E I
Sbjct:   272 GGERVLAVAADFPIPGFNTTNTNNLRLWNAKPTTE-FDFSKFNAGDYQQSVAAQQRAESI 330

Query:   156 CYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDT 215
               VLYP D +   K LRLKQQY   +AS+ DI+ R+  +     NW+ FP++VA+Q+NDT
Sbjct:   331 TSVLYPNDNFEKGKELRLKQQYFWVAASLHDIVRRF--KKNHKSNWQKFPDQVAIQLNDT 388

Query:   216 HPTLCIPDLIRILMDVKGLSWND 238
             HPTL + +L RIL+D++GL W++
Sbjct:   389 HPTLAVVELQRILVDLEGLDWDE 411

GO:0008184 "glycogen phosphorylase activity" evidence=NAS

GO:0009986 "cell surface" evidence=IDA

GO:0030446 "hyphal cell wall" evidence=IDA

DICTYBASE|DDB_G0281383 glpV "glycogen phosphorylase b" [Dictyostelium discoideum (taxid:44689)]

 Score = 335 (123.0 bits), Expect = 9.0e-39, Sum P(2) = 9.0e-39
 Identities = 68/142 (47%), Positives = 91/142 (64%)

Query:    97 GENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKIC 156
             GE V  +AYD P+PGY T  T N+RLWS+K   E FDL AFN G++  A  A    E I 
Sbjct:   239 GELVQAIAYDTPVPGYHTTNTNNIRLWSSKPHKE-FDLDAFNGGNYLSAVEAKQRSENIT 297

Query:   157 YVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTH 216
              VLYP D   + K LRLKQQY   +A++ D+I R++       NW++FP KVA+Q+NDTH
Sbjct:   298 SVLYPNDNTYSGKELRLKQQYFFVAATLCDVIRRFKK---SHQNWQDFPNKVAIQLNDTH 354

Query:   217 PTLCIPDLIRILMDVKGLSWND 238
             PT+ + +L R L+D +GL W +
Sbjct:   355 PTIGVVELFRKLIDEEGLQWEE 376

GO:0008184 "glycogen phosphorylase activity" evidence=IEA;IDA

GO:0005980 "glycogen catabolic process" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004645 "phosphorylase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

SGD|S000006364 GPH1 "Glycogen phosphorylase required for the mobilization of glycogen" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 355 (130.0 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
 Identities = 69/146 (47%), Positives = 94/146 (64%)

Query:    93 QKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNV 152
             Q +GGE V+ VAYD P+PG+KT    NLRLW  +   E FD   FN GD+  + A     
Sbjct:   273 QWIGGERVLAVAYDFPVPGFKTSNVNNLRLWQARPTTE-FDFAKFNNGDYKNSVAQQQRA 331

Query:   153 EKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQM 212
             E I  VLYP D +   K LRLKQQY  C+AS+ DI+ R++ +   P  W  FP++VA+Q+
Sbjct:   332 ESITAVLYPNDNFAQGKELRLKQQYFWCAASLHDILRRFK-KSKRP--WTEFPDQVAIQL 388

Query:   213 NDTHPTLCIPDLIRILMDVKGLSWND 238
             NDTHPTL I +L R+L+D++ L W++
Sbjct:   389 NDTHPTLAIVELQRVLVDLEKLDWHE 414

GO:0008184 "glycogen phosphorylase activity" evidence=IEA;IMP

GO:0005980 "glycogen catabolic process" evidence=IMP

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0004645 "phosphorylase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!
4th Layer	2.4.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
pfam00343	712	pfam00343, Phosphorylase, Carbohydrate phosphoryla	3e-67
cd04300	797	cd04300, GT1_Glycogen_Phosphorylase, This is a fam	3e-62
TIGR02093	794	TIGR02093, P_ylase, glycogen/starch/alpha-glucan p	7e-53
COG0058	750	COG0058, GlgP, Glucan phosphorylase [Carbohydrate	3e-42
PRK14986	815	PRK14986, PRK14986, glycogen phosphorylase; Provis	2e-41
PRK14985	798	PRK14985, PRK14985, maltodextrin phosphorylase; Pr	7e-41
cd04300	797	cd04300, GT1_Glycogen_Phosphorylase, This is a fam	2e-14
TIGR02093	794	TIGR02093, P_ylase, glycogen/starch/alpha-glucan p	8e-13

>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase

 Score =  219 bits (560), Expect = 3e-67
 Identities = 102/239 (42%), Positives = 132/239 (55%), Gaps = 40/239 (16%)

Query: 36  LLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLN-------------- 81
           LL  E DA LGNGGL RLA+CFLDSLATL  PA+   +                      
Sbjct: 12  LLEEENDAGLGNGGLGRLAACFLDSLATLGLPAYGYGIRYEYGMFEQKIVDGWQVELPDD 71

Query: 82  ----NSSLKMVR------------------KKLQKVGGENVMDVAYDVPIPGYKTKTTLN 119
                +  ++ R                  +K +    E V+ VAYD PIPGY+T  T  
Sbjct: 72  WLEYGNPWEIERPDVRYPVRFYGKVEEKEGRKTKWDDTEVVLAVAYDTPIPGYRTNNTNT 131

Query: 120 LRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTL 179
           LRLWS K A+E+F+L  FN GD+  A       E I  VLYP D     K LRLKQQY L
Sbjct: 132 LRLWSAK-ASEEFNLADFNDGDYLAAVEDKNRAENISRVLYPNDNTFEGKELRLKQQYFL 190

Query: 180 CSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
            SA++QDII R++ +  +  +   FP+KVA+Q+NDTHPTL IP+L+RIL+D +GLSW++
Sbjct: 191 VSATLQDIIRRFK-KSHK--SLSEFPDKVAIQLNDTHPTLAIPELMRILIDEEGLSWDE 246

The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin. Length = 712

>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of oligosaccharide phosphorylases

 Score =  207 bits (530), Expect = 3e-62
 Identities = 77/150 (51%), Positives = 98/150 (65%), Gaps = 4/150 (2%)

Query: 89  RKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAA 148
           R +++ V GE V+ V YD PIPGY T T   LRLWS + A+E+FDL AFN GD+ +A   
Sbjct: 187 RLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAE-ASEEFDLDAFNRGDYIRAVEE 245

Query: 149 ITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKV 208
               E I  VLYP D     K LRLKQQY   SAS+QDII R++   G       FP+KV
Sbjct: 246 KNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKTHG---PLSEFPDKV 302

Query: 209 AVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           A+Q+NDTHP L IP+L+RIL+D +GL W++
Sbjct: 303 AIQLNDTHPALAIPELMRILVDEEGLDWDE 332

It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Length = 797

>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases

 Score =  181 bits (462), Expect = 7e-53
 Identities = 72/150 (48%), Positives = 97/150 (64%), Gaps = 4/150 (2%)

Query: 89  RKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAA 148
           R + + V  E V+ + YDVP+PGY+T T   LRLWS + A E+FDL AFN GD+ +A   
Sbjct: 184 RLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAE-APEEFDLDAFNAGDYYEAVEE 242

Query: 149 ITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKV 208
               E I  VLYP D     K LRLKQQY   SAS+QDII R+        +  +FP+KV
Sbjct: 243 KNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLETHP---DLSDFPKKV 299

Query: 209 AVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           A+Q+NDTHP L IP+L+R+L+D +G+ W++
Sbjct: 300 AIQLNDTHPALAIPELMRLLIDEEGMDWDE 329

This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 794

>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and metabolism]

 Score =  152 bits (385), Expect = 3e-42
 Identities = 76/222 (34%), Positives = 100/222 (45%), Gaps = 48/222 (21%)

Query: 36  LLLTELDAALGNGGLERLASCFLDSLATLNYPA-------------------WDMDLDTN 76
               E D  LG GGL RLA CFLDS A L  P                    W ++L   
Sbjct: 104 FGEHESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDE 162

Query: 77  MACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHA 136
                 +  + +R             V YDVP+PGY     + LRLW  +V      L  
Sbjct: 163 -WLKYGNPWEFLRDAEG---------VPYDVPVPGYDN-RVVTLRLWQAQVGRVPLYLLD 211

Query: 137 FNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLG 196
           FN G++        +   I  VLYPGD     K LRLKQ+Y L SA VQDI+ R      
Sbjct: 212 FNVGEN------KNDARNITRVLYPGDS----KELRLKQEYFLGSAGVQDILARGHLEHH 261

Query: 197 EPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
              + +   +     +NDTHP L IP+L+R+L+D +GLSW++
Sbjct: 262 ---DLDVLADH----LNDTHPALAIPELMRLLIDEEGLSWDE 296

Length = 750

>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional

 Score =  149 bits (378), Expect = 2e-41
 Identities = 91/239 (38%), Positives = 125/239 (52%), Gaps = 41/239 (17%)

Query: 36  LLLTELDAALGNGGLERLASCFLDSLATLNYPA--WDMDLDTNMACLN------------ 81
           L+  E D  LGNGGL RLA+CFLDSLATL  P   + +  D  M   N            
Sbjct: 112 LIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGRQKESPDY 171

Query: 82  -------------NSSLKMVR---------KKLQKVGGENVMDVAYDVPIPGYKTKTTLN 119
                        N+  K VR         KK + +  E ++ VAYD  IPGY T  T  
Sbjct: 172 WLEYGNPWEFKRHNTRYK-VRFGGRIQQEGKKTRWIETEEILAVAYDQIIPGYDTDATNT 230

Query: 120 LRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTL 179
           LRLWS + A+ + +L  FN GD+  A     + E +  VLYP D   + + LRL+Q+Y L
Sbjct: 231 LRLWSAQ-ASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFL 289

Query: 180 CSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
            SA+VQDI+ R+         ++N  +K+A+ +NDTHP L IP+L+R+L+D    SW+D
Sbjct: 290 VSATVQDILSRH---YQLHKTYDNLADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDD 345

Length = 815

>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional

 Score =  148 bits (375), Expect = 7e-41
 Identities = 89/247 (36%), Positives = 122/247 (49%), Gaps = 41/247 (16%)

Query: 27  HGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAW----------------- 69
           +   L  + LL  E D ALGNGGL RLA+CFLDS+AT+  PA                  
Sbjct: 94  YDINL--TDLLEEETDPALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGLFRQSFVD 151

Query: 70  --------DMDLDTNMACLNNSSLKM---VRKKLQKVGGEN-------VMDVAYDVPIPG 111
                   D   D+     +N +L +   +  K+ K  G         +   A+D+P+ G
Sbjct: 152 GKQVEAPDDWHRDSYPWFRHNEALDVQVGIGGKVTKQDGRERWEPAFTITGEAWDLPVVG 211

Query: 112 YKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTL 171
           Y+      LRLW     A  FDL  FN GD  +A     + EK+  VLYP D + A K L
Sbjct: 212 YRNGVAQPLRLWQAT-HAHPFDLTKFNDGDFLRAEQQGIDAEKLTKVLYPNDNHTAGKKL 270

Query: 172 RLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDV 231
           RL QQY  C+ SV DI+ R+    G  +     P+   +Q+NDTHPT+ IP+L+R+L+D 
Sbjct: 271 RLMQQYFQCACSVADILRRHH-LAGRKL--HELPDYEVIQLNDTHPTIAIPELLRVLLDE 327

Query: 232 KGLSWND 238
             LSW+D
Sbjct: 328 HQLSWDD 334

Length = 798

>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of oligosaccharide phosphorylases

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 22/30 (73%), Positives = 24/30 (80%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAW 69
           E DA LGNGGL RLA+CFLDSLATL  P +
Sbjct: 99  EPDAGLGNGGLGRLAACFLDSLATLGLPGY 128

It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Length = 797

>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 23/30 (76%), Positives = 24/30 (80%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAW 69
           E DA LGNGGL RLA+CFLDSLATL  PA 
Sbjct: 96  ENDAGLGNGGLGRLAACFLDSLATLGLPAT 125

This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 794

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG2099	843	consensus Glycogen phosphorylase [Carbohydrate tra	100.0
PF00343	713	Phosphorylase: Carbohydrate phosphorylase; InterPr	100.0
TIGR02093	794	P_ylase glycogen/starch/alpha-glucan phosphorylase	100.0
cd04300	797	GT1_Glycogen_Phosphorylase This is a family of oli	100.0
PRK14985	798	maltodextrin phosphorylase; Provisional	100.0
PRK14986	815	glycogen phosphorylase; Provisional	100.0
COG0058	750	GlgP Glucan phosphorylase [Carbohydrate transport	100.0
TIGR02094	601	more_P_ylases alpha-glucan phosphorylases. This fa	100.0
cd04299	778	GT1_Glycogen_Phosphorylase_like This family is mos	100.0
PF08323	245	Glyco_transf_5: Starch synthase catalytic domain;	96.57
cd03791	476	GT1_Glycogen_synthase_DULL1_like This family is mo	96.16
TIGR02095	473	glgA glycogen/starch synthases, ADP-glucose type.	95.06
PRK00654	466	glgA glycogen synthase; Provisional	88.32
PRK14098	489	glycogen synthase; Provisional	86.58

>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-76  Score=573.33  Aligned_cols=216  Identities=47%  Similarity=0.773  Sum_probs=202.8

Q ss_pred             HHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------cC-CC
Q 026345           22 ALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------LN-NS   83 (240)
Q Consensus        22 ~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l~-~~   83 (240)
                      +.|..-|-+|  ++|.++|+|++||||||||||+||||||||||+|++||||||+||+                 |+ +|
T Consensus       111 eAl~qlG~dl--Eel~e~E~DagLGNGGLGRLAaCFlDSMATlglpA~GYGlRYeyGiF~QkI~~g~Q~E~~ddWL~~gn  188 (843)
T KOG2099|consen  111 EALYQLGLDL--EELEEQEEDAGLGNGGLGRLAACFLDSMATLGLPAYGYGLRYEYGIFKQKITDGWQVEEPDDWLRYGN  188 (843)
T ss_pred             HHHHHhCcCH--HHHHhcCcCcCcCCcchHHHHHHHHHHHhhcCCccccccceeehhhHHHHhcCCccccchHHHHHcCC
Confidence            4556667666  9999999999999999999999999999999999999999999999                 66 99


Q ss_pred             Ccccccc-----------------cccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHHHh
Q 026345           84 SLKMVRK-----------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAY  146 (240)
Q Consensus        84 ~We~~~~-----------------~~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~  146 (240)
                      |||+.|+                 ..+|.+++.|.|+|||+|||||.|++|||+|||+|+ ++..|+|..||.|||.+|+
T Consensus       189 PWE~~R~e~~lPV~FyGkV~~~~~g~kWid~q~V~A~~YD~PvPGyk~n~vntlRLWsak-a~~df~l~~fN~Gdy~~av  267 (843)
T KOG2099|consen  189 PWEKARPEVMLPVHFYGKVEHTPDGSKWIDTQVVLAMPYDTPVPGYKNNTVNTLRLWSAK-APNDFDLKDFNVGDYIQAV  267 (843)
T ss_pred             chhhcCcceEeEEEEEEEEEeCCCcceeecceeEEEeccCCCCCCcccCcceeeeeeccC-CCCCCCHHhccCchHHHHH
Confidence            9999997                 256999999999999999999999999999999999 7889999999999999999


Q ss_pred             hhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcC-----CCCCCCCCCCceeEEeCCCCccchH
Q 026345          147 AAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLG-----EPVNWENFPEKVAVQMNDTHPTLCI  221 (240)
Q Consensus       147 ~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g-----~~~~l~~l~~~~~ihlNDtHpalai  221 (240)
                      ..++.+++||+||||||+..+||+||||||||+|+|++|||||||++...     ...++++||++++||||||||+|||
T Consensus       268 ~~~~~AenI~~VLYPnDnf~eGKeLRLKQqyf~caAtLqDIirRFk~sk~~~r~~~~~~~~~FPdkVAiQlNDTHPtLaI  347 (843)
T KOG2099|consen  268 LDRNLAENISRVLYPNDNFFEGKELRLKQQYFLCAATLQDIIRRFKSSKFGCREPVRTNFEEFPDKVAIQLNDTHPTLAI  347 (843)
T ss_pred             HHHHhhhhceEEecCCCccccchhhhhhhhhhhhHHHHHHHHHHHhhcccCcccccccchhhCcHhheeeccCCCccccH
Confidence            99999999999999999999999999999999999999999999987542     2235999999999999999999999


Q ss_pred             HHHHHHHHHhcCCChhhcC
Q 026345          222 PDLIRILMDVKGLSWNDII  240 (240)
Q Consensus       222 ~ElmR~L~de~gl~wd~A~  240 (240)
                      |||||+|||.+|++||+||
T Consensus       348 pELmRiLvD~e~l~W~~AW  366 (843)
T KOG2099|consen  348 PELMRILVDLEGLDWDKAW  366 (843)
T ss_pred             HHHHHHHHhcccCCHHHHH
Confidence            9999999999999999997

>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=100.00  E-value=1.4e-76  Score=588.94  Aligned_cols=211  Identities=49%  Similarity=0.797  Sum_probs=187.3

Q ss_pred             HHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------cC-CCCc
Q 026345           24 ILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------LN-NSSL   85 (240)
Q Consensus        24 ~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l~-~~~W   85 (240)
                      |...|..|  ++|+++|+||+||||||||||||||||+|+||+|++||||||+||+                 |+ ++||
T Consensus         2 l~~lg~~~--~~l~~~E~da~LGNGGLGRLAacfldSlAtl~~p~~GygirY~yG~F~Q~i~dG~QvE~pd~Wl~~g~pW   79 (713)
T PF00343_consen    2 LKELGFDL--EELEEQEPDAGLGNGGLGRLAACFLDSLATLGIPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRYGNPW   79 (713)
T ss_dssp             HHHTT--H--HHHHTTS--EEESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTTTG-TT
T ss_pred             hhHhCCCH--HHHHhhCcCccccCcccchhHHHHHHHHHhCCCCceEEEeeecCCCceeEeecCCcccCCCCccCCCCce
Confidence            45566665  8999999999999999999999999999999999999999999999                 55 8999


Q ss_pred             ccccc------------------cccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHHHhh
Q 026345           86 KMVRK------------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYA  147 (240)
Q Consensus        86 e~~~~------------------~~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~~  147 (240)
                      |++|+                  ..+|.+++.|+|||||+||+||+|++|||||||+|+ +.++||+..||.|||.+|++
T Consensus        80 e~~r~~~~~~V~f~G~v~~~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~vn~LRLw~a~-~~~~fd~~~fn~gdy~~a~~  158 (713)
T PF00343_consen   80 EIRRPDESYEVKFGGRVEDDGGRKVRWEDGETVLAVPYDMPIPGYRTKTVNTLRLWSAE-PSEEFDLESFNRGDYIKAVE  158 (713)
T ss_dssp             SEEEGGGEEEEEESEEEE-EETTEEEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-ESSSTTHHHHHTTCHHHHHH
T ss_pred             EEecCCceEEEeccceEEecCCCcccccCCeEEEEEecCceeecCCCCceEEEEEeccC-CCcccChhhcCCCcHHHHHH
Confidence            99886                  125889999999999999999999999999999999 78899999999999999999


Q ss_pred             hhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHHH
Q 026345          148 AITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRI  227 (240)
Q Consensus       148 n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR~  227 (240)
                      +++.+|+||+||||+|++++||+|||||||||+|||+|||||+|++.++   ++++||+++||||||||||||||||||+
T Consensus       159 ~~~~~e~is~vLYP~d~~~~Gk~LRLkQqyf~vsa~lqdiir~~~~~~~---~~~~~~~~~~ihlNdtHpa~ai~ElmR~  235 (713)
T PF00343_consen  159 EKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKSHG---DLREFPDKVVIHLNDTHPAFAIPELMRI  235 (713)
T ss_dssp             HHHHHHGGGTBSS-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CGGGHHHHEEEEEESSTTTTHHHHHHHH
T ss_pred             HHHHhhceeeecCCCCccccchhhhhhhHhhhhhhHHHHHHHHHHHhCC---ChHHCCcceEEeecCCccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999875   7999999999999999999999999999


Q ss_pred             HHHhcCCChhhcC
Q 026345          228 LMDVKGLSWNDII  240 (240)
Q Consensus       228 L~de~gl~wd~A~  240 (240)
                      |||++|++|++||
T Consensus       236 L~de~gl~~~eA~  248 (713)
T PF00343_consen  236 LMDEEGLSWDEAW  248 (713)
T ss_dssp             HHHTT---HHHHH
T ss_pred             HHHHcCCCHHHHH
Confidence            9999999999996

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....

>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases

Probab=100.00  E-value=6.1e-74  Score=575.07  Aligned_cols=217  Identities=46%  Similarity=0.728  Sum_probs=202.9

Q ss_pred             hhHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------c
Q 026345           18 PHRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------L   80 (240)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l   80 (240)
                      ..-++.|+..|..|  ++|+++|+||+|||||||||||||||||||||+|++||||||+|||                 +
T Consensus        76 ~~~~~~l~~lg~~l--~~i~~~E~Da~LGnGGLGrLAacfldS~Atl~~P~~GyGirY~yG~F~Q~I~dG~Q~E~pd~Wl  153 (794)
T TIGR02093        76 DEVKEALRELGLDL--EEILEIENDAGLGNGGLGRLAACFLDSLATLGLPATGYGIRYEYGLFKQKIVDGWQVELPDDWL  153 (794)
T ss_pred             HHHHHHHHHhCCCH--HHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCCCeEEEEeeecCCceEEEEECCEEEEcCCCcC
Confidence            34578899999888  8999999999999999999999999999999999999999999999                 2


Q ss_pred             C-CCCccccccc---------------------ccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCC
Q 026345           81 N-NSSLKMVRKK---------------------LQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN  138 (240)
Q Consensus        81 ~-~~~We~~~~~---------------------~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~  138 (240)
                      . ++|||++++.                     ..|.+.+.|+|||||+||+||+|+++|+||||+++ +.+.|++..||
T Consensus       154 ~~~~pwe~~r~~~~~~V~f~G~v~~~~~~g~~~~~w~~~~~v~avpyD~pi~Gy~~~~vn~LRLW~a~-~~~~f~l~~fn  232 (794)
T TIGR02093       154 RYGNPWEIRRPDRSYEVRFGGRVELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAE-APEEFDLDAFN  232 (794)
T ss_pred             CCCCCceeecCCcEEEEEeCCEEeeeccCCcceeEeeCceEEEEeecceeecCCCCCceEEEEEEEec-CccccCHhhcc
Confidence            3 7777776651                     13778899999999999999999999999999999 67789999999


Q ss_pred             CcchHHHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCcc
Q 026345          139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPT  218 (240)
Q Consensus       139 ~gd~~~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpa  218 (240)
                      .|||.+|++|++.+|+||++|||+|++++||++||||||||||||+|||||+|++.++   +++.||++++|||||||||
T Consensus       233 ~gdy~~a~~~~~~~e~It~vLYp~D~~~~Gk~lRLkQeyfl~~aglqdiir~~~~~~~---~l~~l~~~~~ihlNDtHpa  309 (794)
T TIGR02093       233 AGDYYEAVEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLETHP---DLSDFPKKVAIQLNDTHPA  309 (794)
T ss_pred             CccHhhhhhChhhcCccccCCcCCCCccchHHHHHHHHHHhhhhHHHHHHHHHHHhCC---ChhhCCcceEEEecCCchH
Confidence            9999999999999999999999999999999999999999999999999999998864   7999999999999999999


Q ss_pred             chHHHHHHHHHHhcCCChhhcC
Q 026345          219 LCIPDLIRILMDVKGLSWNDII  240 (240)
Q Consensus       219 lai~ElmR~L~de~gl~wd~A~  240 (240)
                      ||||||||+|||++|++||+||
T Consensus       310 lai~ElmR~L~d~~gl~wd~Aw  331 (794)
T TIGR02093       310 LAIPELMRLLIDEEGMDWDEAW  331 (794)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHH
Confidence            9999999999999999999996

This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.

>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases

Probab=100.00  E-value=1.7e-73  Score=572.94  Aligned_cols=217  Identities=47%  Similarity=0.768  Sum_probs=204.0

Q ss_pred             hhHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------c
Q 026345           18 PHRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------L   80 (240)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l   80 (240)
                      ..-++.|+..|..|  ++|+++|+||+|||||||||||||||||||||+|++||||||+|||                 +
T Consensus        79 ~~~~~~L~~lg~~l--~~i~~~E~Da~LGnGGLGrLAacfldS~AtLglP~~G~GirY~yG~F~Q~i~~G~Q~E~pd~Wl  156 (797)
T cd04300          79 DEVREALAELGVDL--EDLEEQEPDAGLGNGGLGRLAACFLDSLATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWL  156 (797)
T ss_pred             HHHHHHHHHhCCCH--HHHHhcCCCCCCCCCCcchhHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEecCCCcc
Confidence            44578899999888  8999999999999999999999999999999999999999999999                 2


Q ss_pred             C-CCCccccccc---------------------ccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCC
Q 026345           81 N-NSSLKMVRKK---------------------LQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN  138 (240)
Q Consensus        81 ~-~~~We~~~~~---------------------~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~  138 (240)
                      . ++|||++++.                     ..|.+++.|+|||||+||+||+|+++|+||||+++ +++.||++.||
T Consensus       157 ~~~~pwe~~r~~~~~~V~f~G~~~~~~~~G~~~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~-~~~~~dl~~fn  235 (797)
T cd04300         157 RYGNPWEIRRPDVAVPVRFGGRVEHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAE-ASEEFDLDAFN  235 (797)
T ss_pred             CCCCCceEecCCcEEEEEECCEEEEeecCCcceeeecCcceEEeeecceeecCCCCCceEEEEEEEee-CCCCcCHHHhc
Confidence            3 7788877751                     14777999999999999999999999999999999 68889999999


Q ss_pred             CcchHHHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCcc
Q 026345          139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPT  218 (240)
Q Consensus       139 ~gd~~~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpa  218 (240)
                      +|||.+|++|++.+|+||++|||+|++++||+|||||||||||||+|+|||+|++.++   +++.||++++|||||||||
T Consensus       236 ~gdy~~a~~~~~~~~~It~~LYp~Ds~~~Gk~lRL~Qeyfl~sag~qdilr~~~~~~~---~~~~l~~~~~ihlNDtHpa  312 (797)
T cd04300         236 RGDYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKTHG---PLSEFPDKVAIQLNDTHPA  312 (797)
T ss_pred             CCchhhHHhhHHHhhhhhcccCCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHhCC---ChhhCCCceEEEecCCcHH
Confidence            9999999999999999999999999999999999999999999999999999999876   7999999999999999999


Q ss_pred             chHHHHHHHHHHhcCCChhhcC
Q 026345          219 LCIPDLIRILMDVKGLSWNDII  240 (240)
Q Consensus       219 lai~ElmR~L~de~gl~wd~A~  240 (240)
                      ||||||||+|||++|++||+||
T Consensus       313 lai~ElmR~L~d~~gl~w~~Aw  334 (797)
T cd04300         313 LAIPELMRILVDEEGLDWDEAW  334 (797)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHH
Confidence            9999999999999999999996

It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.

>PRK14985 maltodextrin phosphorylase; Provisional

Probab=100.00  E-value=2.9e-73  Score=569.92  Aligned_cols=215  Identities=39%  Similarity=0.590  Sum_probs=200.2

Q ss_pred             HHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------cC-
Q 026345           20 RKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------LN-   81 (240)
Q Consensus        20 ~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l~-   81 (240)
                      -++.|+..|..|  ++|+++|+||+|||||||||||||||||||||+|++||||||+|||                 +. 
T Consensus        87 ~~~al~~lg~~l--~~i~~~E~Da~LGnGGLGrLAacfldS~AtL~lP~~GyGirY~yG~F~Q~I~dG~Q~E~pd~Wl~~  164 (798)
T PRK14985         87 VQDVLKAYDINL--TDLLEEETDPALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRD  164 (798)
T ss_pred             HHHHHHHcCCCH--HHHhccCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEeccCCCCeEEEEECCeEEECCCCcccC
Confidence            467888888887  8999999999999999999999999999999999999999999999                 23 


Q ss_pred             CCCcccccc----------c-------ccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHH
Q 026345           82 NSSLKMVRK----------K-------LQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAK  144 (240)
Q Consensus        82 ~~~We~~~~----------~-------~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~  144 (240)
                      ++||++.++          +       ..|.+++.|.|||||+||+||+|+++|+||||+++ ++++|++..||.|||.+
T Consensus       165 ~~pwe~~r~~~~~~V~f~G~v~~~~G~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~-~~~~~~l~~fn~gdy~~  243 (798)
T PRK14985        165 SYPWFRHNEALDVQVGIGGKVTKQDGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFNDGDFLR  243 (798)
T ss_pred             CCCceecCCCceEEEeeCCEEEeeCCcEEEECCEEEEEEeccccccCCCCCceEEEEEeEcC-CCCccCHHHcCCcchhh
Confidence            667766554          0       14778888999999999999999999999999999 68899999999999999


Q ss_pred             HhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHH
Q 026345          145 AYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDL  224 (240)
Q Consensus       145 a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~El  224 (240)
                      |++|++.+|+||++|||+|++++||+|||||||||||||+|+|||+|++.+.   +++.||++++|||||||||||||||
T Consensus       244 a~en~~~~e~It~~LYp~D~~~~Gk~lRLkQEyfl~sa~vqdilr~~~~~~~---~l~~l~~~~~ihlNDtHpalai~El  320 (798)
T PRK14985        244 AEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAGR---KLHELPDYEVIQLNDTHPTIAIPEL  320 (798)
T ss_pred             ccccchhhcchhceecCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChhhCCCCcEEEecCCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998653   7999999999999999999999999


Q ss_pred             HHHHHHhcCCChhhcC
Q 026345          225 IRILMDVKGLSWNDII  240 (240)
Q Consensus       225 mR~L~de~gl~wd~A~  240 (240)
                      ||+|||++|++||+||
T Consensus       321 mR~L~d~~gl~wd~Aw  336 (798)
T PRK14985        321 LRVLLDEHQLSWDDAW  336 (798)
T ss_pred             HHHHHHhcCCCHHHHH
Confidence            9999999999999996

>PRK14986 glycogen phosphorylase; Provisional

Probab=100.00  E-value=1.6e-71  Score=558.86  Aligned_cols=216  Identities=40%  Similarity=0.675  Sum_probs=202.3

Q ss_pred             hHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------cC
Q 026345           19 HRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------LN   81 (240)
Q Consensus        19 ~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l~   81 (240)
                      --++.|...|.+|  ++|+++|+||+|||||||||||||||||||||+|++||||||+|||                 +.
T Consensus        97 ~~~~al~~lg~~l--~~l~~~E~Da~LGnGGLGrLAac~ldS~A~LglP~~G~Gi~Y~yG~F~Q~I~dG~Q~E~pd~w~~  174 (815)
T PRK14986         97 DVQGALEAMGLDL--EELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGRQKESPDYWLE  174 (815)
T ss_pred             HHHHHHHHcCCCH--HHHHhcCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEEcCCCccC
Confidence            3477889999888  8999999999999999999999999999999999999999999999                 23


Q ss_pred             -CCCcccccc-----------------cccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchH
Q 026345           82 -NSSLKMVRK-----------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHA  143 (240)
Q Consensus        82 -~~~We~~~~-----------------~~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~  143 (240)
                       ++||++.++                 ...|.+++.|+|||||+|||||+|+++|+||||+++ ++++||+..||.|+|.
T Consensus       175 ~~~pwe~~r~~~~~~V~f~g~~~~~g~~~~w~~~~~v~avpyD~pipgy~t~~vn~lRLW~a~-~~~~fd~~~fn~g~y~  253 (815)
T PRK14986        175 YGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIETEEILAVAYDQIIPGYDTDATNTLRLWSAQ-ASSEINLGKFNQGDYF  253 (815)
T ss_pred             CCCceeEecCCcEEEEEeCCEEEecCceeEeeCCeeEEEEeCCccccCCCCCceEEEEEEEee-cCcccCHhhcccccHH
Confidence             667776654                 125888999999999999999999999999999999 6888999999999999


Q ss_pred             HHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHH
Q 026345          144 KAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPD  223 (240)
Q Consensus       144 ~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~E  223 (240)
                      .|++.++.+|+||++|||+|++++||++||||||||||||+|||||+|++.+.   +++.||++++|||||||||||+||
T Consensus       254 ~a~~~~n~~e~Is~~LYp~D~~y~Gk~lRLkQEyfl~~agv~di~r~~~~~~~---~l~~l~~~v~ihlNDtHpa~~i~E  330 (815)
T PRK14986        254 AAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSRHYQLHK---TYDNLADKIAIHLNDTHPVLSIPE  330 (815)
T ss_pred             HHhhccchhhccccccCCCCCCcccHHHHHHHHHHhhhHHHHHHHHHHHHhCC---CHhhCCcccEEEecCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998874   799999999999999999999999


Q ss_pred             HHHHHHHhcCCChhhcC
Q 026345          224 LIRILMDVKGLSWNDII  240 (240)
Q Consensus       224 lmR~L~de~gl~wd~A~  240 (240)
                      |||+|||++|++||+||
T Consensus       331 lmR~L~d~~gl~~~eA~  347 (815)
T PRK14986        331 LMRLLIDEHKFSWDDAF  347 (815)
T ss_pred             HHHHHHHhcCCCHHHHH
Confidence            99999999999999996

>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.3e-56  Score=447.33  Aligned_cols=197  Identities=39%  Similarity=0.616  Sum_probs=169.0

Q ss_pred             HHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCccccc---CCCCcccccccccccC-
Q 026345           21 KALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACL---NNSSLKMVRKKLQKVG-   96 (240)
Q Consensus        21 ~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl---~~~~We~~~~~~~~~~-   96 (240)
                      |+.++.  .+.|+.++.+.|+|+++| ||||||||||||||||||+|++||||+|+|||+   ..++||++.| ..|.. 
T Consensus        91 ~~~l~~--~~~~~~e~~~~e~~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p-~~w~~~  166 (750)
T COG0058          91 QEALKE--LGYFLMEFGEHESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELP-DEWLKY  166 (750)
T ss_pred             HhhHHh--hhccHHHHhhcccCcccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecc-hhhhcc
Confidence            344444  455669999999999999 999999999999999999999999999999996   3999999988 23321 


Q ss_pred             ---CeeEE---EEeeeeecCCCCCCCeEEEEEEEeeecCc-ccccccCCCcchHHHhhhhhcccccccccccCCchhhhh
Q 026345           97 ---GENVM---DVAYDVPIPGYKTKTTLNLRLWSTKVAAE-DFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARK  169 (240)
Q Consensus        97 ---~~~v~---av~yD~pi~Gy~~~~v~~lRLW~a~v~~~-~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~~~~Gk  169 (240)
                         -+.+.   |+|||+||+||+| ++|++|||+++ +++ +|+|..||.+      +|.+.+|+||++|||+|+    +
T Consensus       167 ~~pwe~~r~~~a~~~d~~V~g~~~-~~~~lrlW~a~-~~~~~~~l~~~n~~------e~~~~~~~iT~~LYp~Ds----~  234 (750)
T COG0058         167 GNPWEFLRDAEGVPYDVPVPGYDN-RVVTLRLWQAQ-VGRVPLYLLDFNVG------ENKNDARNITRVLYPGDS----K  234 (750)
T ss_pred             CCcceeecccCCceeeeeEEeccC-cEEEEEEEEEe-cCccceEeecCCCc------ccchhhhhHHhhcCCCCc----H
Confidence               11122   6999999999999 89999999999 566 8888888877      489999999999999998    7


Q ss_pred             hhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHHHHHHhcCCChhhcC
Q 026345          170 TLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWNDII  240 (240)
Q Consensus       170 elRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~de~gl~wd~A~  240 (240)
                      ++||+|||||||||+|+|++++.++++   +++.+    +.||||||||||++||||+|+|++|++|++||
T Consensus       235 elRl~Qeyfl~~agvq~I~~~~~~~~~---~~~~~----~~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~  298 (750)
T COG0058         235 ELRLKQEYFLGSAGVQDILARGHLEHH---DLDVL----ADHLNDTHPALAIPELMRLLIDEEGLSWDEAW  298 (750)
T ss_pred             HHHHhhhheeeeHHHHHHHHHhhhccc---cccch----hhhhcCCChhHhHHHHHHHHHHHhcCCHHHHH
Confidence            899999999999999999998544432   45544    67799999999999999999999999999996

>TIGR02094 more_P_ylases alpha-glucan phosphorylases

Probab=100.00  E-value=4.1e-44  Score=353.65  Aligned_cols=174  Identities=22%  Similarity=0.263  Sum_probs=146.0

Q ss_pred             hcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc----cCCCCcccccccccccC----CeeEE-----EE
Q 026345           37 LLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC----LNNSSLKMVRKKLQKVG----GENVM-----DV  103 (240)
Q Consensus        37 ~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy----l~~~~We~~~~~~~~~~----~~~v~-----av  103 (240)
                      +.++..+++||||||||||||||||||||+|++||||+|+|||    ++.++||++.+ ..|..    -+.|.     -+
T Consensus         8 ~g~~~~~p~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~-~~~~~~~~p~~~~~~~~g~~~   86 (601)
T TIGR02094         8 YGLHESLPIYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAY-PNNDFESLPIEKVLDTDGKWL   86 (601)
T ss_pred             cccCCCCCccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecC-CccccCCCceEEEecCCCCeE
Confidence            4567889999999999999999999999999999999999999    44799999987 22211    00111     25


Q ss_pred             eeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHHHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccch
Q 026345          104 AYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS  183 (240)
Q Consensus       104 ~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~gg  183 (240)
                      +|++|++|    +++++|+|++++ + .++++.+++++.    +|...+|.||++|||+|     +++|++||||||+||
T Consensus        87 ~~~v~i~g----~~~~~rlw~~~~-~-~v~lylld~~~~----~n~~~~R~it~~LY~~D-----~~~R~~Qe~fl~~a~  151 (601)
T TIGR02094        87 KISVRIRG----RDVYAKVWRVQV-G-RVPLYLLDTNIP----ENSEDDRWITGRLYGGD-----KEMRIAQEIVLGIGG  151 (601)
T ss_pred             EEEEecCC----cEEEEEEEEEEe-C-CCCEEEecCCCc----ccchhhcCccCCCCCCC-----HHHHHHHHHHHHHHH
Confidence            88999999    589999999994 4 488887876653    68899999999999998     468999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHHHHHHhcCCChhhcC
Q 026345          184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWNDII  240 (240)
Q Consensus       184 vq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~de~gl~wd~A~  240 (240)
                      +|+| +++        .+    ++.+||+||+||||+++||||++| +++++|++|+
T Consensus       152 l~~l-~~l--------~~----~pdviH~ND~Htal~~~el~r~l~-~~~~~~~~a~  194 (601)
T TIGR02094       152 VRAL-RAL--------GI----DPDVYHLNEGHAAFVTLERIRELI-AQGLSFEEAW  194 (601)
T ss_pred             HHHH-HHc--------CC----CceEEEeCCchHHHHHHHHHHHHH-HcCCCHHHHH
Confidence            9976 433        12    689999999999999999999999 7899999873

This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.

>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences

Probab=100.00  E-value=4.7e-44  Score=361.06  Aligned_cols=175  Identities=23%  Similarity=0.314  Sum_probs=148.7

Q ss_pred             hhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc----cCCCCcccccccc-----------c-ccCC
Q 026345           34 SLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC----LNNSSLKMVRKKL-----------Q-KVGG   97 (240)
Q Consensus        34 ~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy----l~~~~We~~~~~~-----------~-~~~~   97 (240)
                      +.=+.+...+++||||||||||||||||||||+|++||||+|++||    ++.++||++.+..           . ..|.
T Consensus        92 s~E~gl~~~lpiYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~~~~~G~  171 (778)
T cd04299          92 SMEFGLHESLPIYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPVRDADGE  171 (778)
T ss_pred             ccccccCCCCCccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEEecCCCC
Confidence            3445778899999999999999999999999999999999999999    4579999998721           1 1233


Q ss_pred             eeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHHHhhhhhcccccccccccCCchhhhhhhhhhhhh
Q 026345           98 ENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQY  177 (240)
Q Consensus        98 ~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEy  177 (240)
                      +.+++    +|++|+    .+++|+|+++| + .++++.++++++    +|...+|.||++||++|+     ++||+|||
T Consensus       172 ~~~v~----v~l~g~----~v~~rvw~~~v-g-~v~lylLDtd~~----~n~~~~R~iT~~LYg~D~-----~~Rl~Qe~  232 (778)
T cd04299         172 PVRVS----VELPGR----TVYARVWKAQV-G-RVPLYLLDTDIP----ENSPDDRGITDRLYGGDQ-----ETRIQQEI  232 (778)
T ss_pred             eEEEE----EeeCCC----ceEEEEEEEEc-C-CCCEEEecCCcc----ccchhhcccccCCCCCcH-----HHHHHHHH
Confidence            44444    788985    57999999994 5 489988887776    688999999999999984     68999999


Q ss_pred             hhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHHHHHHhcCCChhhcC
Q 026345          178 TLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWNDII  240 (240)
Q Consensus       178 fLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~de~gl~wd~A~  240 (240)
                      |||+||+|+| +++    |    +    ++.+|||||+||||+++||||+||+++|++|++|+
T Consensus       233 ~Lg~agl~~L-r~l----g----~----~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~  282 (778)
T cd04299         233 LLGIGGVRAL-RAL----G----I----KPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEAL  282 (778)
T ss_pred             HHHHHHHHHH-HHh----C----C----CCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            9999999976 655    2    2    47899999999999999999999998899999873

Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.

>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2

Probab=96.57  E-value=0.003  Score=56.19  Aligned_cols=135  Identities=16%  Similarity=0.175  Sum_probs=73.6

Q ss_pred             CCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccccC--CCCcccccccccccCCeeEEEEeeeeecCCCCCCCeEEEEE
Q 026345           45 LGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLN--NSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRL  122 (240)
Q Consensus        45 LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl~--~~~We~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRL  122 (240)
                      .-.||||..++..-++++.+|..+.-+--+|  |.++  .+..+..........+ .       +++.. .    ..+++
T Consensus        13 ~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y--~~~~~~~~~~~~~~~~~~~~~~-~-------v~~~~-~----~~~~v   77 (245)
T PF08323_consen   13 AKVGGLGDVVGSLPKALAKQGHDVRVIMPKY--GFIDEEYFQLEPVRRLSVPFGG-P-------VPVGV-W----YEVRV   77 (245)
T ss_dssp             B-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T--HHHHHHCTTEEEEEEES-STTC-E-------EEEE---------EEE
T ss_pred             cccCcHhHHHHHHHHHHHhcCCeEEEEEccc--hhhhhhhhcceEEEEecccccc-c-------ccccc-c----eEEEE
Confidence            6789999999999999999999998877777  3333  2111111110000111 1       12111 0    45788


Q ss_pred             EEeeecCcccccccCCCcchHHHhhhhhcccccccccccCC-chhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCC
Q 026345          123 WSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGD-EYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNW  201 (240)
Q Consensus       123 W~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D-~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l  201 (240)
                      |+..+  ++++.+.++...|.        .|   ..+|++. ..+.-...|..   ||+-|.+..+              
T Consensus        78 ~~~~~--~~v~v~~i~~~~~f--------~r---~~iY~~~~~~~~d~~~rf~---~fs~a~le~~--------------  127 (245)
T PF08323_consen   78 YRYPV--DGVPVYFIDNPEYF--------DR---PGIYGDNGGDYPDNAERFA---FFSRAALELL--------------  127 (245)
T ss_dssp             EEEEE--TTEEEEEEESHHHH--------GS---SSSSBSTSSBHTTHHHHHH---HHHHHHHHHH--------------
T ss_pred             EEEEc--CCccEEEecChhhc--------cc---cceeccCCCcchhHHHHHH---HHHHHHHHHH--------------
Confidence            88873  34666555443332        11   2288651 00111123533   7777777743              


Q ss_pred             CCCC-CceeEEeCCCCccchHHHH
Q 026345          202 ENFP-EKVAVQMNDTHPTLCIPDL  224 (240)
Q Consensus       202 ~~l~-~~~~ihlNDtHpalai~El  224 (240)
                      +.++ ++.+||+||-|.|++.+.+
T Consensus       128 ~~l~~~pDIIH~hDW~tal~p~~l  151 (245)
T PF08323_consen  128 KKLGWKPDIIHCHDWHTALAPLYL  151 (245)
T ss_dssp             CTCT-S-SEEEEECGGGTTHHHHH
T ss_pred             HhhCCCCCEEEecCchHHHHHHHh
Confidence            2333 5889999999999998665

4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....

>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases

Probab=96.16  E-value=0.031  Score=52.85  Aligned_cols=145  Identities=14%  Similarity=0.116  Sum_probs=87.3

Q ss_pred             ccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccccCCCCcccccccccccCCeeEEEEeeeeecCCCCCCCeE
Q 026345           39 TELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTL  118 (240)
Q Consensus        39 ~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl~~~~We~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~v~  118 (240)
                      -|..+..-.||||...++.-++++.+|..+.-+.-+|....- ....+.+          ..  ..+.+++.+    ...
T Consensus         7 ~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~-~~~~~~~----------~~--~~~~~~~~~----~~~   69 (476)
T cd03791           7 SEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILD-ELRGQLL----------VL--RLFGVPVGG----RPE   69 (476)
T ss_pred             ccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhh-HhccCeE----------EE--EEEeeccCC----cee
Confidence            355555689999999999999999999999988877765321 1111110          00  111233333    367


Q ss_pred             EEEEEEeeecCcccccccCCCcchHHHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCC
Q 026345          119 NLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEP  198 (240)
Q Consensus       119 ~lRLW~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~  198 (240)
                      .+++|...+  ++++++.++...+    .++......+...|.++         ..+..+|+.++++.+ +++    +  
T Consensus        70 ~~~~~~~~~--~gv~~~~l~~~~~----~~~~~~~~~~~~~~~~~---------~~~~~~f~~~~~~~l-~~~----~--  127 (476)
T cd03791          70 YVGVFELPV--DGVPVYFLDNPDY----FDRPGLYDDSGYDYEDN---------AERFALFSRAALELL-RRL----G--  127 (476)
T ss_pred             EEEEEEEEe--CCceEEEEcChHH----cCCCCCCCccCCCCccH---------HHHHHHHHHHHHHHH-Hhc----C--
Confidence            788998874  3366655543222    12222222344555432         233467888888754 322    1  


Q ss_pred             CCCCCCCCceeEEeCCCCccchHHHHHHHH
Q 026345          199 VNWENFPEKVAVQMNDTHPTLCIPDLIRIL  228 (240)
Q Consensus       199 ~~l~~l~~~~~ihlNDtHpalai~ElmR~L  228 (240)
                            .++.+||.||.|.+++...+-+..
T Consensus       128 ------~~pDviH~hd~~t~~~~~~l~~~~  151 (476)
T cd03791         128 ------WKPDIIHCHDWHTGLVPALLKEKY  151 (476)
T ss_pred             ------CCCcEEEECchHHHHHHHHHHHhh
Confidence                  256899999999988877665543

Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.

>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type

Probab=95.06  E-value=0.15  Score=48.77  Aligned_cols=139  Identities=15%  Similarity=0.091  Sum_probs=83.8

Q ss_pred             ccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccccCCCCcccccccccccCCeeEEEEeeeeecCCCCCCCeE
Q 026345           39 TELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTL  118 (240)
Q Consensus        39 ~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl~~~~We~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~v~  118 (240)
                      .|-.+-.-.||||.-.++.-++++.+|.-+.-+.-+|....-   .|..         ... ......+++.|    ...
T Consensus         8 ~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~---~~~~---------~~~-~~~~~~~~~~~----~~~   70 (473)
T TIGR02095         8 AEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIED---EVDD---------QVK-VVELVDLSVGP----RTL   70 (473)
T ss_pred             eccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhh---hhcc---------CeE-EEEEEEEeecC----cee
Confidence            344455669999999999999999999999888777765321   1110         011 11222344444    367


Q ss_pred             EEEEEEeeecCcccccccCCCcchHHHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCC
Q 026345          119 NLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEP  198 (240)
Q Consensus       119 ~lRLW~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~  198 (240)
                      ++++|...+  ++++++.+....+.    +    |.  ..+|++|...     .+.+-.+|+.|+++.+ ++.    +  
T Consensus        71 ~~~~~~~~~--~~v~~~~i~~~~~~----~----r~--~~~y~~~~~d-----~~~r~~~f~~a~~~~~-~~~----~--  126 (473)
T TIGR02095        71 YVKVFEGVV--EGVPVYFIDNPSLF----D----RP--GGIYGDDYPD-----NAERFAFFSRAAAELL-SGL----G--  126 (473)
T ss_pred             EEEEEEEEE--CCceEEEEECHHHc----C----CC--CCCCCCCCCC-----HHHHHHHHHHHHHHHH-Hhc----C--
Confidence            889999874  23666544332221    1    11  3488842111     2223467888888754 332    1  


Q ss_pred             CCCCCCCCceeEEeCCCCccchHHHH
Q 026345          199 VNWENFPEKVAVQMNDTHPTLCIPDL  224 (240)
Q Consensus       199 ~~l~~l~~~~~ihlNDtHpalai~El  224 (240)
                            .++.+||.||-|++++..-+
T Consensus       127 ------~~~DiiH~hdw~~~~~~~~l  146 (473)
T TIGR02095       127 ------WQPDVVHAHDWHTALVPALL  146 (473)
T ss_pred             ------CCCCEEEECCcHHHHHHHHH
Confidence                  14679999999999877654

This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.

>PRK00654 glgA glycogen synthase; Provisional

Probab=88.32  E-value=1.7  Score=41.68  Aligned_cols=37  Identities=19%  Similarity=0.193  Sum_probs=30.1

Q ss_pred             cccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCc
Q 026345           40 ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTN   76 (240)
Q Consensus        40 E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~   76 (240)
                      |-.+-.-.||||.-.+..-++++.+|.-+.-+.=+|.
T Consensus         9 e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~   45 (466)
T PRK00654          9 ECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYP   45 (466)
T ss_pred             ccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            4445555889999999999999999998887776554

>PRK14098 glycogen synthase; Provisional

Probab=86.58  E-value=3.7  Score=40.17  Aligned_cols=148  Identities=11%  Similarity=0.106  Sum_probs=76.6

Q ss_pred             hcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccccCCCCcccccccccccCCeeEEEEeeeeecCCCCCCC
Q 026345           37 LLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKT  116 (240)
Q Consensus        37 ~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl~~~~We~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~  116 (240)
                      ...|-.+=.=.||||--++..=++++.+|.-+.-+-=+|+  -+....|+....       ..+  ..+++++.+    .
T Consensus        11 v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~--~~~~~~~~~~~~-------~~~--~~~~~~~~~----~   75 (489)
T PRK14098         11 VSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYG--TINDRKFRLHDV-------LRL--SDIEVPLKE----K   75 (489)
T ss_pred             EeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCC--chhhhhhccccc-------eEE--EEEEEeecC----e
Confidence            3445555566799999999999999999987765544443  233222221111       111  112333332    1


Q ss_pred             eEEEEEEEeeecCcccccccCCCcchHHHhhhhhcccccccccccCCc---hhhhhhhhhhhhhhhccchHHHHHHHHHh
Q 026345          117 TLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDE---YIARKTLRLKQQYTLCSASVQDIIVRYEG  193 (240)
Q Consensus       117 v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~---~~~GkelRLkQEyfLg~ggvq~ilr~~~~  193 (240)
                      +...+++.+.....++.++.++...|.    .+.       .+|++++   .+.---.|+   .||+.|.++.+ +..  
T Consensus        76 ~~~~~~~~~~~~~~~v~~~~~~~~~~f----~r~-------~~y~~~~~g~~~~d~~~rf---~~f~~a~l~~~-~~~--  138 (489)
T PRK14098         76 TDLLHVKVTALPSSKIQTYFLYNEKYF----KRN-------GLFTDMSLGGDLKGSAEKV---IFFNVGVLETL-QRL--  138 (489)
T ss_pred             eEEEEEEEecccCCCceEEEEeCHHHc----CCC-------CcCCCCccCCCCCcHHHHH---HHHHHHHHHHH-Hhc--
Confidence            334455444311123445444433332    121       3565310   010012353   47777777643 221  


Q ss_pred             hcCCCCCCCCCCCceeEEeCCCCccchHHHHHHH
Q 026345          194 RLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRI  227 (240)
Q Consensus       194 ~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR~  227 (240)
                            .    .++.+||.||-|++++.+ +++.
T Consensus       139 ------~----~~pDiiH~hdw~t~l~~~-~l~~  161 (489)
T PRK14098        139 ------G----WKPDIIHCHDWYAGLVPL-LLKT  161 (489)
T ss_pred             ------C----CCCCEEEecCcHHHHHHH-HHHH
Confidence                  1    156899999999999876 4543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
1ygp_B	879	Phosphorylated Form Of Yeast Glycogen Phosphorylase		1e-35
3nc4_A	841	The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbaz		3e-31
2g9q_A	842	The Crystal Structure Of The Glycogen Phosphorylase		3e-31
1z6p_A	842	Glycogen Phosphorylase Amp Site Inhibitor Complex L		3e-31
2pyd_A	843	The Crystal Structure Of Glycogen Phosphorylase In		3e-31
1c8l_A	842	Synergistic Inhibition Of Glycogen Phosphorylase A		3e-31
1pyg_A	842	Structural Basis For The Activation Of Glycogen Pho		3e-31
7gpb_A	842	Structural Mechanism For Glycogen Phosphorylase Con		3e-31
1noi_A	842	Complex Of Glycogen Phosphorylase With A Transition		3e-31
1gpa_A	842	Structural Mechanism For Glycogen Phosphorylase Con		3e-31
1z8d_A	842	Crystal Structure Of Human Muscle Glycogen Phosphor		3e-31
1c50_A	830	Identification And Structural Characterization Of A		3e-31
1abb_A	828	Control Of Phosphorylase B Conformation By A Modifi		3e-31
4ej2_A	825	Crystal Structure Of Gpb In Complex With Dk10 Lengt		4e-31
2gj4_A	824	Structure Of Rabbit Muscle Glycogen Phosphorylase I		4e-31
2gm9_A	825	Structure Of Rabbit Muscle Glycogen Phosphorylase I		4e-31
2ffr_A	825	Crystallographic Studies On N-Azido-Beta-D-Glucopyr		9e-31
1xoi_A	846	Human Liver Glycogen Phosphorylase A Complexed With		6e-30
2zb2_A	849	Human Liver Glycogen Phosphorylase A Complexed With		7e-30
3dds_A	848	Crystal Structure Of Glycogen Phosphorylase Complex		7e-30
1em6_A	847	Human Liver Glycogen Phosphorylase A Complexed With		7e-30
1fc0_A	846	Human Liver Glycogen Phosphorylase Complexed With N		7e-30
2qll_A	847	Human Liver Glycogen Phosphorylase- Gl Complex Leng		7e-30
1fa9_A	846	Human Liver Glycogen Phosphorylase A Complexed With		7e-30
3ceh_A	809	Human Liver Glycogen Phosphorylase (Tense State) In		7e-30
1qm5_A	796	Phosphorylase Recognition And Phosphorylysis Of Its		1e-29
2ecp_A	796	The Crystal Structure Of The E. Coli Maltodextrin P		2e-29
1l5v_A	796	Crystal Structure Of The Maltodextrin Phosphorylase		8e-29
1ahp_A	797	Oligosaccharide Substrate Binding In Escherichia Co		1e-28
2c4m_A	796	Starch Phosphorylase: Structural Studies Explain Ox		3e-28

>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone Derivatives To Glycogen Phosphorylase: A New Class Of Inhibitors Length = 841

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 139 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 198
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 199 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 257
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 258 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 317
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 318 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 361

>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab Complex Length = 842

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362

>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex Length = 842

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362

>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex With Glucose At 100 K Length = 843

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 141 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 200
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 201 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 259
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 260 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 319
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 320 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 363

>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A Potential Antidiabetic Drug And Caffeine Length = 842

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362

>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen Phosphorylase B By Adenosine Monophosphate Length = 842

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362

>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By Phosphorylation And Amp Length = 842

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362

>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State Analogue Nojirimycin Tetrazole And Phosphate In The T And R States Length = 842

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362

>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By Phosphorylation And Amp Length = 842

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362

>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A With Amp And Glucose Length = 842

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 141 AACFLDSMATLGLAAYGYGIRYEFGIFNQKISGGWQMEEADDWLRYGNPWEKARPEFTLP 200
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 201 VHFYGHVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 259
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 260 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 319
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+RIL+D++ + W+
Sbjct: 320 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRILVDLERMDWD 363

>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel Allosteric Binding Site Of Glycogen Phosphorylase B Length = 830

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 128 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 187
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 188 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 246
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 247 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 306
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 307 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 350

>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified Cofactor: Crystallographic Studies On R-State Glycogen Phosphorylase Reconstituted With Pyridoxal 5'-Diphosphate Length = 828

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 131 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 190
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 191 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 249
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 250 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 309
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 310 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 353

>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10 Length = 825

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 129 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 188
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 189 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 247
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 248 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 307
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 308 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 351

>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand Length = 824

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 129 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 188
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 189 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 247
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 248 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 307
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 308 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 351

>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Thienopyrrole Length = 825

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 129 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 188
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 189 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 247
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++  + G 
Sbjct: 248 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 307
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
            +PV  N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 308 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 351

>pdb|2FFR|A Chain A, Crystallographic Studies On N-Azido-Beta-D-Glucopyranosylamine, An Inhibitor Of Glycogen Phosphorylase: Comparison With N-Acetyl-Beta-D- Glucopyranosylamine Length = 825

Iteration: 1
 Score =  130 bits (326), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 129 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 188
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++   +  + V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN
Sbjct: 189 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 247
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG----- 193
            G + +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++      
Sbjct: 248 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 307
Query: 194 RLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
           R     N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 308 RDPRVTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 351

>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Chloroindoloyl Glycine Amide Length = 846

Iteration: 1
 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 199
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++      + +  + V+ + YD P+PGY   T   +RLWS + A  DF+L  FN
Sbjct: 200 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
            GD+ +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++      
Sbjct: 259 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 318
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
             G    ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 319 TRGAATVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 362

>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose And 5- Chloro-N-[4-(1, 2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide Length = 849

Iteration: 1
 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 143 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 202
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++      + +  + V+ + YD P+PGY   T   +RLWS + A  DF+L  FN
Sbjct: 203 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 261
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
            GD+ +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++      
Sbjct: 262 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 321
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
             G    ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 322 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 365

>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With An Anthranilimide Based Inhibitor Gsk261 Length = 848

Iteration: 1
 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 142 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 201
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++      + +  + V+ + YD P+PGY   T   +RLWS + A  DF+L  FN
Sbjct: 202 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 260
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
            GD+ +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++      
Sbjct: 261 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 320
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
             G    ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 321 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 364

>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac And Cp-526, 423 Length = 847

Iteration: 1
 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 141 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 200
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++      + +  + V+ + YD P+PGY   T   +RLWS + A  DF+L  FN
Sbjct: 201 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 259
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
            GD+ +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++      
Sbjct: 260 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 319
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
             G    ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 320 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 363

>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With N-Acetyl-Beta-D- Glucopyranosylamine Length = 846

Iteration: 1
 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 199
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++      + +  + V+ + YD P+PGY   T   +RLWS + A  DF+L  FN
Sbjct: 200 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
            GD+ +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++      
Sbjct: 259 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 318
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
             G    ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 319 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 362

>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex Length = 847

Iteration: 1
 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 141 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 200
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++      + +  + V+ + YD P+PGY   T   +RLWS + A  DF+L  FN
Sbjct: 201 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 259
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
            GD+ +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++      
Sbjct: 260 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 319
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
             G    ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 320 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 363

>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp Length = 846

Iteration: 1
 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 199
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++      + +  + V+ + YD P+PGY   T   +RLWS + A  DF+L  FN
Sbjct: 200 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
            GD+ +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++      
Sbjct: 259 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 318
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
             G    ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 319 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 362

>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In Complex With The Allosteric Inhibitor Ave5688 Length = 809

Iteration: 1
 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54  ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
           A+CFLDS+ATL   A+   +       N                                
Sbjct: 118 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 177
Query: 83  ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
                 ++      + +  + V+ + YD P+PGY   T   +RLWS + A  DF+L  FN
Sbjct: 178 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 236
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
            GD+ +A       E I  VLYP D +   K LRLKQ+Y + +A++QDII R++      
Sbjct: 237 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 296
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
             G    ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 297 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 340

>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its Oligosaccharide Substrate: Answers To A Long Outstanding Question Length = 796

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 114/228 (50%), Gaps = 42/228 (18%)
Query: 46  GNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSL--KMVRK------------- 90
           GNGGL RLA+CFLDS+AT+   A    L+        S +  K V               
Sbjct: 111 GNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFR 170
Query: 91  -----KLQ-KVGGENVMD-----------VAYDVPIPGYKTKTTLNLRLWSTKVAAEDFD 133
                 +Q  +GG+   D            A+D+P+ GY+      LRLW     A  FD
Sbjct: 171 HNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFD 229
Query: 134 LHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYE- 192
           L  FN GD  +A     N EK+  VLYP D + A K LRL QQY  C+ SV DI+ R+  
Sbjct: 230 LTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHL 289
Query: 193 -GR-LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
            GR L E  ++E       +Q+NDTHPT+ IP+L+R+L+D   +SW+D
Sbjct: 290 AGRKLHELADYE------VIQLNDTHPTIAIPELLRVLIDEHQMSWDD 331

>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin Phosphorylase Complex Length = 796

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 113/228 (49%), Gaps = 42/228 (18%)
Query: 46  GNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSL--KMVRK------------- 90
           GNGGL RLA+CFLDS+AT+   A    L+        S +  K V               
Sbjct: 111 GNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFR 170
Query: 91  -----KLQ-KVGGENVMD-----------VAYDVPIPGYKTKTTLNLRLWSTKVAAEDFD 133
                 +Q  +GG    D            A+D+P+ GY+      LRLW     A  FD
Sbjct: 171 HNEALDVQVGIGGAVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFD 229
Query: 134 LHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYE- 192
           L  FN GD  +A     N EK+  VLYP D + A K LRL QQY  C+ SV DI+ R+  
Sbjct: 230 LTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHL 289
Query: 193 -GR-LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
            GR L E  ++E       +Q+NDTHPT+ IP+L+R+L+D   +SW+D
Sbjct: 290 AGRELHELADYE------VIQLNDTHPTIAIPELLRVLIDEHQMSWDD 331

>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase Complexed With Glucose-1-Phosphate Length = 796

Iteration: 1
 Score =  123 bits (309), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 112/228 (49%), Gaps = 42/228 (18%)
Query: 46  GNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSL--KMVRK------------- 90
           GNGGL RLA+CFLDS+AT+   A    L+        S +  K V               
Sbjct: 111 GNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFR 170
Query: 91  -----KLQ-KVGGENVMD-----------VAYDVPIPGYKTKTTLNLRLWSTKVAAEDFD 133
                 +Q  +GG+   D            A+D+P+ GY+      LRLW     A  FD
Sbjct: 171 HNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFD 229
Query: 134 LHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYE- 192
           L  FN GD  +A     N EK+  VLYP D     K LRL QQY  C+ SV DI+ R+  
Sbjct: 230 LTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHL 289
Query: 193 -GR-LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
            GR L E  ++E       +Q+NDTHPT+ IP+L+R+L+D   +SW+D
Sbjct: 290 AGRKLHELADYE------VIQLNDTHPTIAIPELLRVLIDEHQMSWDD 331

>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli Maltodextrin Phsphorylase Length = 797

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 112/228 (49%), Gaps = 42/228 (18%)
Query: 46  GNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSL--KMVRK------------- 90
           G GGL RLA+CFLDS+AT+   A    L+        S +  K V               
Sbjct: 112 GAGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFR 171
Query: 91  -----KLQ-KVGGENVMD-----------VAYDVPIPGYKTKTTLNLRLWSTKVAAEDFD 133
                 +Q  +GG    D            A+D+P+ GY+      LRLW     A  FD
Sbjct: 172 HNEALDVQVGIGGAVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFD 230
Query: 134 LHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYE- 192
           L  FN GD  +A     N EK+  VLYP D + A K LRL QQY  C+ SV DI+ R+  
Sbjct: 231 LTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHL 290
Query: 193 -GR-LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
            GR L E  ++E       +Q+NDTHPT+ IP+L+R+L+D   +SW+D
Sbjct: 291 AGRELHELADYE------VIQLNDTHPTIAIPELLRVLIDEHQMSWDD 332

>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion- Dependent Kinetic Stability And Regulatory Control. Length = 796

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/214 (36%), Positives = 100/214 (46%), Gaps = 25/214 (11%)
Query: 46  GNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNS------------------SLKM 87
           GNGGL RLA+CFLDS  T +YP     L         S                     +
Sbjct: 112 GNGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTI 171
Query: 88  VRKKLQKVGGENVMD---VAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAK 144
            R   Q V   + M    + YD+PI GY T     LRLW  +   E+FD  AFN      
Sbjct: 172 RRASDQLVVCFDDMKTRAIPYDMPITGYGTHNVGTLRLWKAE-PWEEFDYDAFNAQRFTD 230
Query: 145 AYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENF 204
           A      V  IC VLYP D     K LR++QQY   SAS+Q +I   +  L    +  NF
Sbjct: 231 AIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMI---QDHLAHHKDLSNF 287
Query: 205 PEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
            E  +VQ+NDTHP L IP+L+R+LMD   + W +
Sbjct: 288 AEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEE 321

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
2c4m_A	796	Glycogen phosphorylase; allosteric control, phosph	6e-79
2gj4_A	824	Glycogen phosphorylase, muscle form; transferase;	1e-64
2gj4_A	824	Glycogen phosphorylase, muscle form; transferase;	1e-12
1ygp_A	879	Yeast glycogen phosphorylase; phosphorylated form,	1e-64
1ygp_A	879	Yeast glycogen phosphorylase; phosphorylated form,	3e-13
1l5w_A	796	Maltodextrin phosphorylase; enzymatic catalysis, s	3e-64
1l5w_A	796	Maltodextrin phosphorylase; enzymatic catalysis, s	7e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Length = 796

 Score =  251 bits (644), Expect = 6e-79
 Identities = 81/234 (34%), Positives = 103/234 (44%), Gaps = 45/234 (19%)

Query: 36  LLLTELDAALGNGGLERLASCFLDSLATLNYPA--------------------------- 68
           +L  E DAALGNGGL RLA+CFLDS  T +YP                            
Sbjct: 102 ILEIENDAALGNGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDP 161

Query: 69  WDMDLDTNMACLNNSSLKMVRK--KLQKV--GGENVMDVAYDVPIPGYKTKTTLNLRLWS 124
           W                  +R+      V         + YD+PI GY T     LRLW 
Sbjct: 162 W----------REEEYPFTIRRASDQLVVCFDDMKTRAIPYDMPITGYGTHNVGTLRLWK 211

Query: 125 TKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASV 184
            +   E+FD  AFN      A      V  IC VLYP D     K LR++QQY   SAS+
Sbjct: 212 AE-PWEEFDYDAFNAQRFTDAIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASL 270

Query: 185 QDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           Q +I  +        +  NF E  +VQ+NDTHP L IP+L+R+LMD   + W +
Sbjct: 271 QAMIQDHLAHHK---DLSNFAEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEE 321

>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Length = 824

 Score =  213 bits (546), Expect = 1e-64
 Identities = 62/149 (41%), Positives = 92/149 (61%), Gaps = 6/149 (4%)

Query: 95  VGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEK 154
           V  + V+ + YD P+PGY+      +RLWS K A  DF+L  FN G + +A       E 
Sbjct: 205 VDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFNVGGYIQAVLDRNLAEN 263

Query: 155 ICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPV-----NWENFPEKVA 209
           I  VLYP D +   K LRLKQ+Y + +A++QDII R++            N++ FP+KVA
Sbjct: 264 ISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRTNFDAFPDKVA 323

Query: 210 VQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           +Q+NDTHP+L IP+L+R+L+D++ L W+ 
Sbjct: 324 IQLNDTHPSLAIPELMRVLVDLERLDWDK 352

>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Length = 824

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 21/30 (70%), Positives = 24/30 (80%)

Query: 40  ELDAALGNGGLERLASCFLDSLATLNYPAW 69
           E DA LGNGGL RLA+CFLDS+ATL   A+
Sbjct: 115 EEDAGLGNGGLGRLAACFLDSMATLGLAAY 144

>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Length = 796

 Score =  212 bits (542), Expect = 3e-64
 Identities = 55/144 (38%), Positives = 75/144 (52%), Gaps = 4/144 (2%)

Query: 95  VGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEK 154
                +   A+D+P+ GY+      LRLW     A  FDL  FN GD  +A     N EK
Sbjct: 192 EPEFTITGQAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFNDGDFLRAEQQGINAEK 250

Query: 155 ICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMND 214
           +  VLYP D     K LRL QQY  C+ SV DI+ R+              +   +Q+ND
Sbjct: 251 LTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLAGR---KLHELADYEVIQLND 307

Query: 215 THPTLCIPDLIRILMDVKGLSWND 238
           THPT+ IP+L+R+L+D   +SW+D
Sbjct: 308 THPTIAIPELLRVLIDEHQMSWDD 331

>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Length = 796

 Score = 66.4 bits (163), Expect = 7e-13
 Identities = 22/34 (64%), Positives = 26/34 (76%)

Query: 36  LLLTELDAALGNGGLERLASCFLDSLATLNYPAW 69
           LL  E+D ALGNGGL RLA+CFLDS+AT+   A 
Sbjct: 101 LLEEEIDPALGNGGLGRLAACFLDSMATVGQSAT 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 42/302 (13%), Positives = 83/302 (27%), Gaps = 94/302 (31%)

Query: 7   PLAKLPHPLLSPH---RKAL--------ILVHGKA------LFPSLLLLTELDAALGNG- 48
             AK     L P+   R+AL        +L+ G        +   + L  ++   +    
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 49  -----GLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKM--------VRKKLQKV 95
                         L+ L  L Y    +D +      ++S++K+        +R+ L+  
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLY---QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 96  GGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHA---FNTGDHAKAYAAITNV 152
             EN + V  +V                + K     F+L       T             
Sbjct: 242 PYENCLLVLLNV---------------QNAKA-WNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 153 EKICYVLYPGDEYIARKTLRLKQQYT--------------------LCSASVQDIIVRYE 192
                + +        +   L  +Y                     + + S++D +  ++
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 193 GRLGEPVNW-----ENFPEKVAVQMNDTHPT--------LCI-PDLIRILMDVKGLSWND 238
                  NW     +     +   +N   P         L + P    I   +  L W D
Sbjct: 346 -------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 239 II 240
           +I
Sbjct: 399 VI 400

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
1ygp_A	879	Yeast glycogen phosphorylase; phosphorylated form,	100.0
1l5w_A	796	Maltodextrin phosphorylase; enzymatic catalysis, s	100.0
2gj4_A	824	Glycogen phosphorylase, muscle form; transferase;	100.0
2c4m_A	796	Glycogen phosphorylase; allosteric control, phosph	100.0
3vue_A	536	GBSS-I, granule-bound starch synthase 1, chloropla	80.06

>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*

Probab=100.00  E-value=5.2e-70  Score=547.87  Aligned_cols=216  Identities=37%  Similarity=0.569  Sum_probs=201.2

Q ss_pred             hHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------cC
Q 026345           19 HRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------LN   81 (240)
Q Consensus        19 ~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l~   81 (240)
                      .-++.|...|..|  ++|+++|+|++|||||||||||||||||||||+|++||||||+|||                 +.
T Consensus        86 ~~~~~l~~~g~~l--~~~~~~E~d~~LgnGGLGrLAacfldS~a~l~~p~~G~Gi~Y~~G~F~Q~i~dG~Q~E~~d~wl~  163 (796)
T 1l5w_A           86 DVQDSLKAYDINL--TDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHR  163 (796)
T ss_dssp             HHHHHHHTTTCCH--HHHHTTCCCCCCCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCCCCG
T ss_pred             HHHHHHHHcCCCH--HHHHhcCCCcCcCCCcHHHHHHHHHHHHHhCCCCeEEEeeeecCCceeEEecCCeeEEecCcccc
Confidence            4578899999887  8999999999999999999999999999999999999999999999                 23


Q ss_pred             -CCCccccccc----------c----cccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHHHh
Q 026345           82 -NSSLKMVRKK----------L----QKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAY  146 (240)
Q Consensus        82 -~~~We~~~~~----------~----~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~  146 (240)
                       ++|||..++.          +    .|.+++.|+|+|||+||+||+|+++|+||||+|+ +++.|+|..||+|||.+|+
T Consensus       164 ~~~pwe~~r~~~~~~V~f~g~~~~~~~w~~~~~v~av~yd~pi~Gy~~~~~n~lrlW~a~-~~~~f~l~~fn~gdy~~a~  242 (796)
T 1l5w_A          164 SNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFNDGDFLRAE  242 (796)
T ss_dssp             GGCTTCEECGGGCEEEEESCEECTTSCEECSEEEEEEEEEEEEECSSSCCEEEEEEEEEE-CSSCCCHHHHHTTCTTGGG
T ss_pred             CCCcceeecCCcEEEEeeCCEEeecceecCCceEEEEEecccccCCCCCceEEEEEEEec-cCcccChhhcCCccHhhhh
Confidence             6677766651          1    3899999999999999999999999999999999 6778999999999999999


Q ss_pred             hhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHH
Q 026345          147 AAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIR  226 (240)
Q Consensus       147 ~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR  226 (240)
                      ++++.+|+||++|||+|++++||++|||||||||+||+|+|+|+|++.++   +++.|+++++||||||||||+++||||
T Consensus       243 ~~~~~~~~It~~LYp~D~~~~Gk~lRL~Qe~ff~~a~lq~ilr~~~~~~~---~~~~l~~p~viHlNDtHpal~i~ElmR  319 (796)
T 1l5w_A          243 QQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLAGR---KLHELADYEVIQLNDTHPTIAIPELLR  319 (796)
T ss_dssp             HHHHHHHGGGTCSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CGGGHHHHEEEEEESSTTTTHHHHHHH
T ss_pred             hchHhHhhhhhcCcCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ChhhcCCccEEEecCCccHhHHHHHHH
Confidence            99999999999999999999999999999999999999999999988765   688899999999999999999999999


Q ss_pred             HHHHhcCCChhhcC
Q 026345          227 ILMDVKGLSWNDII  240 (240)
Q Consensus       227 ~L~de~gl~wd~A~  240 (240)
                      +|+|++|++|++|+
T Consensus       320 ~l~d~~~~~~d~A~  333 (796)
T 1l5w_A          320 VLIDEHQMSWDDAW  333 (796)
T ss_dssp             HHHHHSCCCHHHHH
T ss_pred             HHhhhcCCCHHHHH
Confidence            99999999999985

>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...

Probab=100.00  E-value=5.8e-70  Score=549.02  Aligned_cols=219  Identities=40%  Similarity=0.710  Sum_probs=189.7

Q ss_pred             hHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------cC
Q 026345           19 HRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------LN   81 (240)
Q Consensus        19 ~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l~   81 (240)
                      .-++.|...|..|  ++|+++|+||+|||||||||||||||||||||+|++||||||+|||                 |.
T Consensus        96 ~~~~~l~~~g~~l--~~i~~~E~d~~LgnGGLGrLAacfldS~AtL~~P~~G~Gi~Y~~G~F~Q~i~dG~Q~E~~d~Wl~  173 (824)
T 2gj4_A           96 ACDEATYQLGLDM--EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLR  173 (824)
T ss_dssp             HHHHHHHHTTCCH--HHHHTTSCCEEECCSHHHHHHHHHHHHHHHTTCCEEEEEECCSBCSCEEEEETTEEEEECCCTTT
T ss_pred             HHHHHHHHhCCCH--HHHHhcCCCcCcCCCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeeEEeeCCEEEEcCccccc
Confidence            4578899999888  8999999999999999999999999999999999999999999999                 34


Q ss_pred             -CCCccccccc----------c-------cccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchH
Q 026345           82 -NSSLKMVRKK----------L-------QKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHA  143 (240)
Q Consensus        82 -~~~We~~~~~----------~-------~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~  143 (240)
                       +||||++|+.          +       .|.+.+.|+|+|||+|||||+|++||+||||+|+ +.+.||+..||.|+|.
T Consensus       174 ~~~pwe~~r~~~~~~V~f~g~v~~~~~g~~w~~~~~v~av~yD~pi~Gy~~~~vn~lRlW~a~-~~~~f~~~~fn~G~~~  252 (824)
T 2gj4_A          174 YGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFNVGGYI  252 (824)
T ss_dssp             TCCTTCEECGGGCEEEEESCEEEECSSSEEEESCEEEEEEEEEEEEECSSSSCEEEEEEEEEE-CCC----------CHH
T ss_pred             cCCcccccCCCceEEEEeCCEEEecCCCceecccceEEEeeccCCcCCCCCCceEEEEEEEee-cCcccchhhccCccHH
Confidence             7888877651          1       5777789999999999999999999999999999 7888999999999999


Q ss_pred             HHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhc-CC----CCCCCCCCCceeEEeCCCCcc
Q 026345          144 KAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRL-GE----PVNWENFPEKVAVQMNDTHPT  218 (240)
Q Consensus       144 ~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~-g~----~~~l~~l~~~~~ihlNDtHpa  218 (240)
                      .|+..++.+++||++|||+|++++||++||||||||||||+|||||+|++.+ |.    ..+++.|++|++|||||||||
T Consensus       253 ~a~~d~~~~enIt~~LYp~D~~~~Gk~lRL~Qeyf~~sa~lqdilr~~~~~~~g~~~~~~~~~~~~~~p~viHlNDtHpa  332 (824)
T 2gj4_A          253 QAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPS  332 (824)
T ss_dssp             HHHHTHHHHHGGGSBCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-----------CGGGHHHHEEEEEESSTTT
T ss_pred             HHHhcccchhhcCcCCCCCCCccchHhHhhhhhhhhhhhHHHHHHHHHHHhccccccccccchhhcCCCcEEEccCCchH
Confidence            9999999999999999999999999999999999999999999999998763 21    026888899999999999999


Q ss_pred             chHHHHHHHHHHhcCCChhhcC
Q 026345          219 LCIPDLIRILMDVKGLSWNDII  240 (240)
Q Consensus       219 lai~ElmR~L~de~gl~wd~A~  240 (240)
                      |+++||||+|+|++|++|++|+
T Consensus       333 l~i~ElmR~l~d~~~l~~d~A~  354 (824)
T 2gj4_A          333 LAIPELMRVLVDLERLDWDKAW  354 (824)
T ss_dssp             THHHHHHHHHHHTSCCCHHHHH
T ss_pred             hHHHHHHHHHHHhcCCCHHHHH
Confidence            9999999999999999999984

>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}

Probab=100.00  E-value=5.6e-69  Score=540.39  Aligned_cols=216  Identities=38%  Similarity=0.604  Sum_probs=198.5

Q ss_pred             hHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCccccc-----------------C
Q 026345           19 HRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACL-----------------N   81 (240)
Q Consensus        19 ~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl-----------------~   81 (240)
                      .-++.|...|..|  ++|+++|+|++|||||||||||||||||||||+|++||||||+|||+                 .
T Consensus        87 ~~~~~l~~~g~~l--~~~~~~E~d~~LgnGGLGrLAac~ldS~a~l~~p~~G~Gl~Y~~G~F~Q~i~dG~Q~E~~d~wl~  164 (796)
T 2c4m_A           87 EAAAATRELGHEL--TDILEIENDAALGNGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWRE  164 (796)
T ss_dssp             HHHHHHHHTTCCH--HHHHTTCCCBCCCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCCSSS
T ss_pred             HHHHHHHHcCCCH--HHHHhhccccccCCCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeEEEeeCCEEEeeCCcccc
Confidence            4578899999988  89999999999999999999999999999999999999999999992                 2


Q ss_pred             -CCCccccccc---ccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHHHhhhhhccccccc
Q 026345           82 -NSSLKMVRKK---LQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICY  157 (240)
Q Consensus        82 -~~~We~~~~~---~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~  157 (240)
                       ++|||..++.   .+..++..|+|+|||+||+||+|+++|+||||+|+ +++.|+|..||+|||.+|+++++.+|+||+
T Consensus       165 ~g~pwe~~r~~~~~~V~f~g~~v~a~~yd~pi~gy~~~~~n~lrlW~a~-~~~~f~l~~fn~gdy~~a~~~~~~~~~It~  243 (796)
T 2c4m_A          165 EEYPFTIRRASDQLVVCFDDMKTRAIPYDMPITGYGTHNVGTLRLWKAE-PWEEFDYDAFNAQRFTDAIIERERVSDICR  243 (796)
T ss_dssp             SCCTTSEECGGGCEEEEETTEEEEEEEEEEEECCTTCCCCEEEEEEEEE-ESSSSCHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCceeEecCCcEEEEEeCCEEEEEEEEeccccCcCCCceEEEEEEecc-cccccchhhccCcchhhhhhchHhhhchhh
Confidence             4555544431   12347889999999999999999999999999999 677899989999999999999999999999


Q ss_pred             ccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHHHHHHhcCCChh
Q 026345          158 VLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN  237 (240)
Q Consensus       158 ~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~de~gl~wd  237 (240)
                      +|||+|++++||++|||||||||+||+|+|+|+|++.++   +++.|+++++||||||||||+++||||+|+|++|++|+
T Consensus       244 ~LYp~D~~~~Gk~lRL~Qe~ff~~a~lq~ilr~~~~~~~---~l~~l~~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d  320 (796)
T 2c4m_A          244 VLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQDHLAHHK---DLSNFAEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWE  320 (796)
T ss_dssp             SSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSTTHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHH
T ss_pred             cCcCCCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHhCC---ChhhcCCCeEEEeCCChHHhHHHHHHHHHhhhcCCCHH
Confidence            999999999999999999999999999999999988875   69999999999999999999999999999999999999


Q ss_pred             hcC
Q 026345          238 DII  240 (240)
Q Consensus       238 ~A~  240 (240)
                      +|+
T Consensus       321 ~A~  323 (796)
T 2c4m_A          321 ESW  323 (796)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            985

>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*

Probab=80.06  E-value=7.7  Score=36.75  Aligned_cols=145  Identities=14%  Similarity=0.126  Sum_probs=68.7

Q ss_pred             CCCCchhhHHHhHHhhhcCCCCeeeeecCCcccccCCCCcccccccccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEe
Q 026345           46 GNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWST  125 (240)
Q Consensus        46 gnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl~~~~We~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a  125 (240)
                      =.||||.-++..=++++.+|.-+.-+-=.|..  + .+.|+..              +...+++.+    ....+++|..
T Consensus        24 K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~--~-~~~~~~~--------------~~~~~~~~~----~~~~~~~~~~   82 (536)
T 3vue_A           24 KTGGLGDVLGGLPPAMAANGHRVMVISPRYDQ--Y-KDAWDTS--------------VVAEIKVAD----RYERVRFFHC   82 (536)
T ss_dssp             CSSHHHHHHHHHHHHHHTTTCEEEEEEECCSC--C-TTCEEEE--------------EEEEEEETT----EEEEEEEEEC
T ss_pred             ccCcHHHHHHHHHHHHHHcCCeEEEEecCchh--h-hhhcccc--------------eEEEEEecC----ceEEEEEEEE
Confidence            37999999999999999999988765544431  2 1222211              112344444    2456777777


Q ss_pred             eecCcccccccCCCcchHHHhhhhhcccccccccccCCch--hhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCC-C
Q 026345          126 KVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEY--IARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNW-E  202 (240)
Q Consensus       126 ~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~~--~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l-~  202 (240)
                      ..  ++++++.++...|.    ++... .-...+|++++.  +.--..|.   .||+-+.++. ++.+... .. ..+ .
T Consensus        83 ~~--~gv~~y~id~~~~~----~r~~~-~~~~~~Y~~~~~~~~~d~~~rf---~~f~~a~l~~-~~~l~~~-~~-~~~~~  149 (536)
T 3vue_A           83 YK--RGVDRVFIDHPSFL----EKVWG-KTGEKIYGPDTGVDYKDNQMRF---SLLCQAALEA-PRILNLN-NN-PYFKG  149 (536)
T ss_dssp             EE--TTEEEEEEECTTTT----CC-------------------CHHHHHH---HHHHHHHHHH-HHHCCCC-CC-TTCCS
T ss_pred             EE--CCceEEEecChhhh----ccccc-cCCCcccCCCccCccchHHHHH---HHHHHHHHHH-HHHhccc-cc-hhhhc
Confidence            62  23444433332221    11111 112346655431  10011232   3555555553 3333100 00 001 1


Q ss_pred             CCCCceeEEeCCCCccchHHHH
Q 026345          203 NFPEKVAVQMNDTHPTLCIPDL  224 (240)
Q Consensus       203 ~l~~~~~ihlNDtHpalai~El  224 (240)
                      ....++++|.||-|.+++.+-+
T Consensus       150 ~~~~ddIiH~hDW~t~l~~~~l  171 (536)
T 3vue_A          150 TYGEDVVFVCNDWHTGPLASYL  171 (536)
T ss_dssp             CCCSCEEEEEESGGGSTHHHHH
T ss_pred             cCCCCEEEEECcchHHHHHHHH
Confidence            2335789999999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1ygpa_	876	c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeas	1e-52
d1l5wa_	796	c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {E	3e-44
d2gj4a1	824	c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit	2e-43

>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Length = 796

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Oligosaccharide phosphorylase
domain: Maltodextrin phosphorylase (MALP)
species: Escherichia coli [TaxId: 562]

 Score =  155 bits (394), Expect = 3e-44
 Identities = 82/235 (34%), Positives = 109/235 (46%), Gaps = 36/235 (15%)

Query: 36  LLLTELDAALGNGGLERLASCFLDSLATLNYPAW-------------------------D 70
           LL  E+D ALGNGGL RLA+CFLDS+AT+   A                          D
Sbjct: 101 LLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDD 160

Query: 71  MDLDTNMACLNNSSLK-------MVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
                     +N +L         V K  +      +   A+D+P+ GY+      LRLW
Sbjct: 161 WHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLW 220

Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
               A   FDL  FN GD  +A     N EK+  VLYP D     K LRL QQY  C+ S
Sbjct: 221 QATHA-HPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACS 279

Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
           V DI+ R+              +   +Q+NDTHPT+ IP+L+R+L+D   +SW+D
Sbjct: 280 VADILRRHHLAGR---KLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDD 331

>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 824

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Oligosaccharide phosphorylase
domain: Glycogen phosphorylase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  154 bits (389), Expect = 2e-43
 Identities = 87/243 (35%), Positives = 124/243 (51%), Gaps = 41/243 (16%)

Query: 36  LLLTELDAALGNGGLERLASCFLDSLATLNYPA--------------------------- 68
           L   E DA LGNGGL RLA+CFLDS+ATL   A                           
Sbjct: 111 LEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADD 170

Query: 69  WDMDLDTNMACLNNSSL--------KMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNL 120
           W    +         +L        +   +  + V  + V+ + YD P+PGY+      +
Sbjct: 171 WLRYGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTM 230

Query: 121 RLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLC 180
           RLWS K A  DF+L  FN G + +A       E I  VLYP D +   K LRLKQ+Y + 
Sbjct: 231 RLWSAK-APNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVV 289

Query: 181 SASVQDIIVRYE-----GRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLS 235
           +A++QDII R++      R     N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L 
Sbjct: 290 AATLQDIIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLD 349

Query: 236 WND 238
           W+ 
Sbjct: 350 WDK 352

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1ygpa_	876	Glycogen phosphorylase {Baker's yeast (Saccharomyc	100.0
d1l5wa_	796	Maltodextrin phosphorylase (MALP) {Escherichia col	100.0
d2gj4a1	824	Glycogen phosphorylase {Rabbit (Oryctolagus cunicu	100.0

>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Oligosaccharide phosphorylase
domain: Maltodextrin phosphorylase (MALP)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-66  Score=520.73  Aligned_cols=216  Identities=37%  Similarity=0.568  Sum_probs=198.8

Q ss_pred             hHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccccC---CCCcccccc-----
Q 026345           19 HRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLN---NSSLKMVRK-----   90 (240)
Q Consensus        19 ~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl~---~~~We~~~~-----   90 (240)
                      .-++.|+..|..+  ++|+++|+|++|||||||||||||||||||||+|++||||+|+|||++   .++||++.|     
T Consensus        86 ~~~~al~~lg~~~--~~~~~~E~d~~LgnGGLG~LAgd~lkSaadLglP~vGvGLlY~~GyF~Q~i~dG~Q~E~~d~w~~  163 (796)
T d1l5wa_          86 DVQDSLKAYDINL--TDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHR  163 (796)
T ss_dssp             HHHHHHHTTTCCH--HHHHTTCCCCCCCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCCCCG
T ss_pred             HHHHHHHHcCCCH--HHHHhcCcCCCCCCchHHHHHHHHHHHHHhCCCCEEEEEcCcCCCCeEEEEECCEEEECCCCccc
Confidence            4578888888877  899999999999999999999999999999999999999999999932   355655543     


Q ss_pred             ------------------------cccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHHHh
Q 026345           91 ------------------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAY  146 (240)
Q Consensus        91 ------------------------~~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~  146 (240)
                                              ..+|.++++|.|+|||+||+||.+++||+||||+++ +++.|++..|+++||.+++
T Consensus       164 ~~~P~~~~~~~~~~~v~~~g~v~~~~~w~~~~~V~a~~~d~~v~g~~~~~v~~LrLw~a~-~~~~~~~~~~~~~d~~~~~  242 (796)
T d1l5wa_         164 SNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFNDGDFLRAE  242 (796)
T ss_dssp             GGCTTCEECGGGCEEEEESCEECTTSCEECSEEEEEEEEEEEEECSSSCCEEEEEEEEEE-CSSCCCHHHHHTTCTTGGG
T ss_pred             CCCceeeccccceEEEeeccEEeecCcccCceEEEEEeeeeeeecccCCceeEEEeeecc-cCccccccccccccHHHHH
Confidence                                    023778899999999999999999999999999999 6888999999999999999


Q ss_pred             hhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHH
Q 026345          147 AAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIR  226 (240)
Q Consensus       147 ~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR  226 (240)
                      +|++.+|+||++|||+|++++||++||+||||||+||+|+|+|++++...   ++..++++++|||||||||||++||||
T Consensus       243 ~n~~~~r~IT~~LY~~D~~~~gkelRl~Qe~~l~~~g~~~l~r~~~~~~~---~~~~~~~~~vihlNEgHpafai~El~R  319 (796)
T d1l5wa_         243 QQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLAGR---KLHELADYEVIQLNDTHPTIAIPELLR  319 (796)
T ss_dssp             HHHHHHHGGGTCSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CGGGHHHHEEEEEESSTTTTHHHHHHH
T ss_pred             hchhhhhccceEeCCCCcccchHHHHHHHHHhhhhhHHHHHHHHHhhcCC---ChHHccchhhhhcccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987654   799999999999999999999999999


Q ss_pred             HHHHhcCCChhhcC
Q 026345          227 ILMDVKGLSWNDII  240 (240)
Q Consensus       227 ~L~de~gl~wd~A~  240 (240)
                      +|||++|++|++|+
T Consensus       320 ~l~d~~gl~~~~A~  333 (796)
T d1l5wa_         320 VLIDEHQMSWDDAW  333 (796)
T ss_dssp             HHHHHSCCCHHHHH
T ss_pred             HHHHhcCCCHHHHH
Confidence            99999999999995

>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Oligosaccharide phosphorylase
domain: Glycogen phosphorylase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=6.2e-66  Score=517.95  Aligned_cols=219  Identities=39%  Similarity=0.684  Sum_probs=188.7

Q ss_pred             hHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCccccc-----------------C
Q 026345           19 HRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACL-----------------N   81 (240)
Q Consensus        19 ~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl-----------------~   81 (240)
                      .-++.|+..|..|  ++|+++|+||+|||||||||||||||||||||+|++||||||+|||+                 .
T Consensus        96 ~~~~al~~~g~~l--~~i~~~E~da~LGnGGLGrLAgd~LkSaAdLglP~~G~GL~Y~~GyF~Q~I~dG~Q~E~~d~w~~  173 (824)
T d2gj4a1          96 ACDEATYQLGLDM--EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLR  173 (824)
T ss_dssp             HHHHHHHHTTCCH--HHHHTTSCCEEECCSHHHHHHHHHHHHHHHTTCCEEEEEECCSBCSCEEEEETTEEEEECCCTTT
T ss_pred             HHHHHHHHcCCCH--HHHHhcCCCCCCCCccHHHHHHHHHHHHHhCCCCeEEEEcCcCCCCeEEEEECCeEEEcCCcccc
Confidence            4578899998888  89999999999999999999999999999999999999999999992                 2


Q ss_pred             -CCCcccccc-----------------cccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchH
Q 026345           82 -NSSLKMVRK-----------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHA  143 (240)
Q Consensus        82 -~~~We~~~~-----------------~~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~  143 (240)
                       ++|||+.++                 ..+|.+++.|.|+|||+||+||++.++|++|||+++ +...|++..|+.|+|.
T Consensus       174 ~~~Pwe~~r~~~~~~v~f~g~v~~~~~~~~w~~~~~V~avpydv~i~g~~~~~vn~lRlW~a~-~~~~f~~~~~~~G~~~  252 (824)
T d2gj4a1         174 YGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFNVGGYI  252 (824)
T ss_dssp             TCCTTCEECGGGCEEEEESCEEEECSSSEEEESCEEEEEEEEEEEEECSSSSCEEEEEEEEEE-CCC----------CHH
T ss_pred             CCCCceeecccceeEEecCceeeecCccccccCceEEEEEeeeeEEeeccCceeEEEEEEeec-cCccccccccccCcHH
Confidence             555655554                 124788999999999999999999999999999999 7888999999999999


Q ss_pred             HHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCC-----CCCCCCCCCceeEEeCCCCcc
Q 026345          144 KAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGE-----PVNWENFPEKVAVQMNDTHPT  218 (240)
Q Consensus       144 ~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~-----~~~l~~l~~~~~ihlNDtHpa  218 (240)
                      .++.+.+..++||++|||+|+.|.||++||+||||||+||+|+|+|+|++....     ..+++.||++++|||||||||
T Consensus       253 ~~lld~~~~eni~~~ly~~d~ly~G~~lRl~Qqy~l~~~g~~~ilr~~~~~~~~~~~~~~~~~~~~~~~~vihlNegHpa  332 (824)
T d2gj4a1         253 QAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPS  332 (824)
T ss_dssp             HHHHTHHHHHGGGSBCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-----------CGGGHHHHEEEEEESSTTT
T ss_pred             HHHHhhcchhcchhccCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhccccceeeccCCccH
Confidence            999999999999999999999999999999999999999999999999875310     025788999999999999999


Q ss_pred             chHHHHHHHHHHhcCCChhhcC
Q 026345          219 LCIPDLIRILMDVKGLSWNDII  240 (240)
Q Consensus       219 lai~ElmR~L~de~gl~wd~A~  240 (240)
                      ||++||||+|||++|++||+||
T Consensus       333 ~ai~ElmR~l~d~~gl~~d~A~  354 (824)
T d2gj4a1         333 LAIPELMRVLVDLERLDWDKAW  354 (824)
T ss_dssp             THHHHHHHHHHHTSCCCHHHHH
T ss_pred             hHHHHHHHHHHHhcCCCHHHHH
Confidence            9999999999999999999985