Citrus Sinensis ID: 026362

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MVASAISASLSFSATSLNRTFASFFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLNDS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccEEEEEccccccHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHccccccccEEEEEccccccEEEcHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEccccccccccccccccccccEEccccccccccccccccccccccccEEccccccccccccccEcccccccccccEEEEcccHHcHHHHHHcccEEEEEccEcHHHHHHHHHHHHHHHHHcccccEEEEEEEccEcHHHHHHHHHHHHHccccEEEEEEEEEEcHHHHHHHccccccEEEccccEEEEcccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MVASAISASLSFSATSLNRTFASFfsnrnssrsivsalpspygdsssgglsirnrglplkidekdfcstEHSYKIisgkndnpplmpavmtpggpldlssvlfrnriifigqpiNSMVAQRAISQLVTLATIDEDADILMylncpggsiysVLAIYDCmswikpkvgtvCFGVAASQAAIILAGGekgmryampnarimlnqpqsgsgghveDVKRQVNEAVISRHVSLSFLLLHTLNDS
Flexible Loop (DISEMBL)
MVASAIsaslsfsaTSLNRTFASFFSNRNSSRSIVSALpspygdsssgglsiRNRGLPLKIDEKDFCSTEHSYKIisgkndnppLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVslsflllhtlnds
Low Complexity Region (SEG)
MVasaisaslsfsatsLnrtfasffsnrnssrsIVSALPSPYGDSSSGGLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLNDS
Disordered region (IsUnstruct)
************************************************************IDEKDFCSTEHSYKII****************GGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI*******************VNEAVISRHVSLSFLLLHT****
Disordered Region (DISOPRED)
***********************************************************************************PLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFL*LHT****
Disordered Region (DISEMBL)
MVASAISASLSFSATSLNRTFASFFSNRNSSRSIVSAL**********GLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLNDS
Disordered Region (DISPRO)
***********F*****NRTFASFFSNRNSSRSIVSALPSPYG*SSSGGLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVASAISASLSFSATSLNRTFASFFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLNDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q9SAA2	271	ATP-dependent Clp proteas	yes	no	0.883	0.782	0.698	2e-83
Q8KC73	225	ATP-dependent Clp proteas	yes	no	0.716	0.764	0.402	8e-31
A7HFV9	204	ATP-dependent Clp proteas	yes	no	0.516	0.607	0.5	2e-30
Q13UT1	215	ATP-dependent Clp proteas	yes	no	0.629	0.702	0.433	2e-30
A0LEF1	202	ATP-dependent Clp proteas	yes	no	0.587	0.698	0.489	2e-30
Q59993	226	ATP-dependent Clp proteas	N/A	no	0.662	0.703	0.411	3e-30
B1L812	203	ATP-dependent Clp proteas	yes	no	0.495	0.586	0.512	5e-30
A5IJ91	203	ATP-dependent Clp proteas	yes	no	0.495	0.586	0.512	5e-30
Q9WZF9	203	ATP-dependent Clp proteas	yes	no	0.495	0.586	0.512	5e-30
C0QGT0	205	ATP-dependent Clp proteas	yes	no	0.637	0.746	0.414	6e-30

>sp|Q9SAA2|CLPP6_ARATH ATP-dependent Clp protease proteolytic subunit 6, chloroplastic OS=Arabidopsis thaliana GN=CLPP6 PE=1 SV=1

 Score =  308 bits (790), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 153/219 (69%), Positives = 174/219 (79%), Gaps = 7/219 (3%)

Query: 10  LSFSATSLNRTFASFFSN--RNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLKIDEKDFC 67
           LSFS+ + N    SF S+  RN  R IVSAL SPYGDS   GLS    G P+KID K   
Sbjct: 12  LSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSGSPIKIDNK--- 68

Query: 68  STEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 127
                + +I  K  NPP+MP+VMTPGGPLDLSSVLFRNRIIFIGQPIN+ VAQR ISQLV
Sbjct: 69  --APRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLV 126

Query: 128 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 187
           TLA+ID+ +DILMYLNCPGGS YSVLAIYDCMSWIKPKVGTV FGVAASQ A++LAGGEK
Sbjct: 127 TLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEK 186

Query: 188 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
           GMRYAMPN R+M++QPQ+G GGHVEDV+RQVNEA+ +R 
Sbjct: 187 GMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQ 225

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity). Essential protein required for chloroplast development and integrity.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 9EC: 2

>sp|Q8KC73|CLPP_CHLTE ATP-dependent Clp protease proteolytic subunit OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=clpP PE=3 SV=1

 Score =  134 bits (336), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 103/179 (57%), Gaps = 7/179 (3%)

Query: 65  DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 117
           +F    H+ K+ SG  +N     L+P V+   G      D+ S L R RIIF+G PI+  
Sbjct: 5   NFGFDHHAKKLYSGAIENSINSQLVPMVIETSGRGERAFDIFSRLLRERIIFLGSPIDEH 64

Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
           VA   I+QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P + TVC G+AAS 
Sbjct: 65  VAGLIIAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPDISTVCVGMAASM 124

Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
            A +LA G  G R ++P++RIM++QP  G+ G   D+  Q  E    RH+    L  HT
Sbjct: 125 GAFLLASGTSGKRASLPHSRIMIHQPSGGAQGQETDILIQAREIEKIRHLLEDLLAKHT 183

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|A7HFV9|CLPP_ANADF ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter sp. (strain Fw109-5) GN=clpP PE=3 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 84/124 (67%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RI+F+G PI+  VA   I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21  DIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPGGSVTSGLAIY 80

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D M ++KP+V T+C G AAS  A +LAGG  G R+A+PNARIM++QP  G  G   D+  
Sbjct: 81  DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQPMGGFQGQATDIDI 140

Query: 217 QVNE 220
           Q  E
Sbjct: 141 QARE 144

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Anaeromyxobacter sp. (strain Fw109-5) (taxid: 404589)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q13UT1|CLPP1_BURXL ATP-dependent Clp protease proteolytic subunit 1 OS=Burkholderia xenovorans (strain LB400) GN=clpP1 PE=3 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 94/159 (59%), Gaps = 8/159 (5%)

Query: 72  SYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 127
           SY  I+G      L+P V+   G      D+ S L R RI+F+  P+N   A   ++QL+
Sbjct: 4   SYPTITGLG----LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASVIVAQLL 59

Query: 128 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 187
            L + + D DI  Y+N PGGS+Y  LAIYD M +IKP+V T+C G AAS    +L  G++
Sbjct: 60  FLESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQR 119

Query: 188 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
           G RYA+PNARIM++QP  GS G   DV+ Q  E +  R 
Sbjct: 120 GKRYALPNARIMIHQPSGGSQGTAADVEIQAKEVLYLRE 158

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Burkholderia xenovorans (strain LB400) (taxid: 266265)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|A0LEF1|CLPP_SYNFM ATP-dependent Clp protease proteolytic subunit OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=clpP PE=3 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 87/141 (61%)

Query: 96  LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
            D+ S L R+RIIF+G  I   VA   I+QL+ L + D D DI  Y+N PGG + + LAI
Sbjct: 18  FDIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHFYINSPGGLVTAGLAI 77

Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
           YD M +IKP V T+C G AAS AAI+LA G KG RYA+P+ RIML+QP  G  G   DV+
Sbjct: 78  YDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRIMLHQPMGGFQGQATDVE 137

Query: 216 RQVNEAVISRHVSLSFLLLHT 236
            Q  E +  R      L+ HT
Sbjct: 138 IQAKEILKLREELNDILVRHT 158

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q59993|CLPP2_SYNY3 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpP2 PE=3 SV=1

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 4/163 (2%)

Query: 78  GKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATID 133
           G N+   ++P V+   G      D+ S L R RIIF+G P++  VA   ++QL+ L   D
Sbjct: 16  GGNNIQSVVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAED 75

Query: 134 EDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM 193
            + DI +Y+N PGGS+Y+ LAIYD M  I+P V T+CFG+AAS  A +L+GG KG R A+
Sbjct: 76  PEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMAL 135

Query: 194 PNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
           P++RIM++QP  G+ G   +++ Q  E +  +    + L+ HT
Sbjct: 136 PSSRIMIHQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHT 178

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|B1L812|CLPP_THESQ ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 61/119 (51%), Positives = 84/119 (70%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RI+F+G PI+  VA   I+QL+ L   D D D+ +Y+N PGGS+ + LAIY
Sbjct: 28  DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
           D M +IK  V T+C G AAS AA++LA G KG RYA+PNARIM++QP  G+ G  +DV+
Sbjct: 88  DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVE 146

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Thermotoga sp. (strain RQ2) (taxid: 126740)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|A5IJ91|CLPP_THEP1 ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 61/119 (51%), Positives = 84/119 (70%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RI+F+G PI+  VA   I+QL+ L   D D D+ +Y+N PGGS+ + LAIY
Sbjct: 28  DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
           D M +IK  V T+C G AAS AA++LA G KG RYA+PNARIM++QP  G+ G  +DV+
Sbjct: 88  DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVE 146

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) (taxid: 390874)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q9WZF9|CLPP_THEMA ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=clpP PE=3 SV=1

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 61/119 (51%), Positives = 84/119 (70%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RI+F+G PI+  VA   I+QL+ L   D D D+ +Y+N PGGS+ + LAIY
Sbjct: 28  DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
           D M +IK  V T+C G AAS AA++LA G KG RYA+PNARIM++QP  G+ G  +DV+
Sbjct: 88  DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVE 146

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|C0QGT0|CLPP_DESAH ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=clpP PE=3 SV=1

 Score =  130 bits (328), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 4/157 (2%)

Query: 84  PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
           PL+P V+          D+ S L ++RIIF+G  ++  VA   ++QL+ L + D + DI 
Sbjct: 2   PLIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDIN 61

Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
            Y+N PGG + + +A+YD M +IKP V TVC G AAS  A++LA G KG R+++PN+RIM
Sbjct: 62  FYINSPGGVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIM 121

Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
           ++QP  G+ G   D+K Q NE +  + V    L  HT
Sbjct: 122 IHQPLGGAQGQASDIKIQANEILRMKEVLSGILSKHT 158

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) (taxid: 177437)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
449462250	274	PREDICTED: ATP-dependent Clp protease pr	0.941	0.824	0.753	6e-94
255556085	277	ATP-dependent Clp protease proteolytic s	0.941	0.815	0.752	1e-91
356538797	273	PREDICTED: ATP-dependent Clp protease pr	0.933	0.820	0.729	5e-88
255636441	273	unknown [Glycine max]	0.933	0.820	0.729	6e-88
356545265	273	PREDICTED: ATP-dependent Clp protease pr	0.933	0.820	0.711	4e-85
255646657	273	unknown [Glycine max]	0.933	0.820	0.707	8e-85
357473193	237	ATP-dependent Clp protease proteolytic s	0.958	0.970	0.683	7e-84
224080315	265	predicted protein [Populus trichocarpa]	0.891	0.807	0.707	1e-83
388515053	275	unknown [Lotus japonicus]	0.937	0.818	0.695	2e-83
297844024	271	hypothetical protein ARALYDRAFT_471314 [	0.920	0.815	0.686	3e-83

>gi|449462250|ref|XP_004148854.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like [Cucumis sativus] gi|449515355|ref|XP_004164715.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like [Cucumis sativus]

 Score =  349 bits (895), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 171/227 (75%), Positives = 191/227 (84%), Gaps = 1/227 (0%)

Query: 1   MVASAISASLSFSATSLNRTFA-SFFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGLPL 59
           +VAS  +ASLSFS  S NR  + S  S RNS RSIVSA P PYGDSS+ GLS +  G PL
Sbjct: 2   VVASPFTASLSFSVASNNRASSISQLSRRNSHRSIVSAFPRPYGDSSTIGLSSKTNGAPL 61

Query: 60  KIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVA 119
            +D+KDF  T  SY+ I  + DNPP+MPAVMTPGGPLDLSSVLFRNRIIFIGQPINS VA
Sbjct: 62  NLDDKDFLRTSTSYEPIVARRDNPPVMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSTVA 121

Query: 120 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 179
           QR ISQLVTLATIDEDADIL+YLNCPGGS YS+LAIYDCMSWIKPKVGTVCFG+ ASQ A
Sbjct: 122 QRVISQLVTLATIDEDADILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGIVASQGA 181

Query: 180 IILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
           ++LAGGEKGMRYAMPN+RIM++QPQSG GG VEDV+RQVNEAV SR+
Sbjct: 182 LLLAGGEKGMRYAMPNSRIMIHQPQSGCGGDVEDVRRQVNEAVQSRN 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556085|ref|XP_002519077.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] gi|223541740|gb|EEF43288.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 173/230 (75%), Positives = 189/230 (82%), Gaps = 4/230 (1%)

Query: 1   MVASAISASLSFSATSLNRTFASFFS---NRNSSRSIVSAL-PSPYGDSSSGGLSIRNRG 56
           +VASAI+A +SFS  S N+T  S  S   +R S+R IVS+L  SPY DSS GGLS R  G
Sbjct: 2   VVASAITAPVSFSIFSTNKTLPSVSSSSFHRVSARFIVSSLNSSPYRDSSIGGLSSRRSG 61

Query: 57  LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 116
           LPL IDEK+      SY  I  K  NPP+MPAVMTPGGPLDL SVLFRNRIIFIGQPINS
Sbjct: 62  LPLSIDEKNSHRATQSYITIEAKKGNPPIMPAVMTPGGPLDLQSVLFRNRIIFIGQPINS 121

Query: 117 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 176
            VAQR ISQLVTLATIDE++DILMYLNCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAAS
Sbjct: 122 QVAQRVISQLVTLATIDENSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAAS 181

Query: 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
           Q A++LAGGEKGMRYAMPNARIM++QPQ G GGHVEDV+RQVNEAV SRH
Sbjct: 182 QGALLLAGGEKGMRYAMPNARIMIHQPQGGCGGHVEDVRRQVNEAVQSRH 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538797|ref|XP_003537887.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like [Glycine max]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 167/229 (72%), Positives = 188/229 (82%), Gaps = 5/229 (2%)

Query: 1   MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
           MV  A+S  AS SF+  S  R+ +   FS+RN   SI S+LP+PYG SS  GLS ++RG 
Sbjct: 1   MVPQALSVPASASFTIASRTRSPSHLVFSHRNPC-SIASSLPNPYGHSSGVGLSSKSRGF 59

Query: 58  PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
           PLK+DEK+      SY  I  K  NPP+ PAVMTPGGPLDLSSVLFRNRIIFIGQP+NS 
Sbjct: 60  PLKLDEKNIHGASTSYGAIEAKG-NPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSQ 118

Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
           VAQR ISQLVTLATIDE+ADIL+Y+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 119 VAQRVISQLVTLATIDENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 178

Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
            A++LAGGEKGMRYAMPNARIM++QPQSG GGHVEDV+RQVNEAV SRH
Sbjct: 179 GALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRH 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636441|gb|ACU18559.1| unknown [Glycine max]

 Score =  329 bits (844), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 167/229 (72%), Positives = 188/229 (82%), Gaps = 5/229 (2%)

Query: 1   MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
           MV  A+S  AS SF+  S  R+ +   FS+RN   SI S+LP+PYG SS  GLS ++RG 
Sbjct: 1   MVPQALSVPASASFTIASRTRSPSHLVFSHRNPC-SIASSLPNPYGHSSGVGLSSKSRGF 59

Query: 58  PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
           PLK+DEK+      SY  I  K  NPP+ PAVMTPGGPLDLSSVLFRNRIIFIGQP+NS 
Sbjct: 60  PLKLDEKNIHGASTSYGAIEAKG-NPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSQ 118

Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
           VAQR ISQLVTLATIDE+ADIL+Y+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 119 VAQRVISQLVTLATIDENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 178

Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
            A++LAGGEKGMRYAMPNARIM++QPQSG GGHVEDV+RQVNEAV SRH
Sbjct: 179 GALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRH 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545265|ref|XP_003541065.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like [Glycine max]

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 163/229 (71%), Positives = 184/229 (80%), Gaps = 5/229 (2%)

Query: 1   MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
           MV  A+S  AS S +  S  R+ +   FS RN   SI S+LP+PYG SS  GLS ++RG 
Sbjct: 1   MVPQALSVPASSSLAIASRTRSPSHLVFSQRNPC-SIASSLPNPYGHSSEVGLSSKSRGF 59

Query: 58  PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
           PLK DEK+      SY  I  K  NPP+ PAVMTPGGPLDL+SVLFRNRIIFIGQP+NS 
Sbjct: 60  PLKHDEKNIHGASTSYGAIEAKG-NPPITPAVMTPGGPLDLTSVLFRNRIIFIGQPVNSQ 118

Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
           VAQR ISQLVTLATI+E+ADIL+Y+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 119 VAQRVISQLVTLATINENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 178

Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
            A++LAGGEKGMRYAMPNARI ++QPQSG GGHVEDV+RQVNEAV SRH
Sbjct: 179 GALLLAGGEKGMRYAMPNARITIHQPQSGCGGHVEDVRRQVNEAVQSRH 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646657|gb|ACU23802.1| unknown [Glycine max]

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 162/229 (70%), Positives = 181/229 (79%), Gaps = 5/229 (2%)

Query: 1   MVASAISASLSFSATSLNRTFAS---FFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
           MV  A+S   S S    +RT +     FS RN   SI S+LP+PYG SS  GLS ++RG 
Sbjct: 1   MVPQALSVPASSSLAIASRTRSPSHLVFSQRNPC-SIASSLPNPYGHSSEVGLSSKSRGF 59

Query: 58  PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
           PLK DEK+      SY  I  K  NPP+ PAVMTPGGPLDL+SVLFRNRIIFIGQP+NS 
Sbjct: 60  PLKHDEKNIHGASTSYGTIEAKG-NPPITPAVMTPGGPLDLTSVLFRNRIIFIGQPVNSQ 118

Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
           VAQR ISQLVTLATI+E+ADIL+Y+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 119 VAQRVISQLVTLATINENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 178

Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
            A+ LAGGEKGMRYAMPNARI ++QPQSG GGHVEDV+RQVNEAV SRH
Sbjct: 179 GALFLAGGEKGMRYAMPNARITIHQPQSGCGGHVEDVRRQVNEAVQSRH 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473193|ref|XP_003606881.1| ATP-dependent Clp protease proteolytic subunit [Medicago truncatula] gi|355507936|gb|AES89078.1| ATP-dependent Clp protease proteolytic subunit [Medicago truncatula]

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 160/234 (68%), Positives = 183/234 (78%), Gaps = 4/234 (1%)

Query: 1   MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
           MV+ A+S  A+ +F+  S  R  +   FS+RN   +I S+  SPYG SS  GLS +  G 
Sbjct: 1   MVSQALSVPATPTFTIASHRRIPSQLAFSHRNPC-TIASSFHSPYGSSSQIGLSSKTHGF 59

Query: 58  PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
            LK+DEK       SY +I  K  NPP+ PA+MTPGG LDLSSVLFRNRIIFIGQP+NS 
Sbjct: 60  RLKLDEKSTHDVGTSYGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQ 119

Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
           VAQR ISQLVTLATID DADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 120 VAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 179

Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSF 231
             ++LAGGEKGMRY+MPNARIM+NQPQ G GGHVEDV+R VNE+V SR+VSLSF
Sbjct: 180 GTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDVRRLVNESVQSRYVSLSF 233

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080315|ref|XP_002306094.1| predicted protein [Populus trichocarpa] gi|118485273|gb|ABK94496.1| unknown [Populus trichocarpa] gi|222849058|gb|EEE86605.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 160/226 (70%), Positives = 181/226 (80%), Gaps = 12/226 (5%)

Query: 3   ASAISA-SLSFSATSLNRTFA-SFFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLK 60
           ASAISA + SFS     ++ + S FS+R +S  +VSALP PY DSS+         L L+
Sbjct: 4   ASAISAPATSFSIFPRAKSPSLSLFSHRRNS--VVSALPRPYSDSSTR--------LSLR 53

Query: 61  IDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQ 120
           IDEK F   + SY  +  K  NPP+MPAVMTPGGP+DLSSVLFRNRIIFIGQPINS VAQ
Sbjct: 54  IDEKGFRDAKQSYVTVEAKGGNPPIMPAVMTPGGPMDLSSVLFRNRIIFIGQPINSQVAQ 113

Query: 121 RAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI 180
           R ISQLVTLATIDE  DIL+YLNCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ A+
Sbjct: 114 RVISQLVTLATIDEKTDILLYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGAL 173

Query: 181 ILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
           +L+GGEKGMRYAMPNARIM++QPQ G GGHVEDV+RQVNEAV +RH
Sbjct: 174 LLSGGEKGMRYAMPNARIMIHQPQGGCGGHVEDVRRQVNEAVQARH 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515053|gb|AFK45588.1| unknown [Lotus japonicus]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 182/230 (79%), Gaps = 5/230 (2%)

Query: 1   MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSG-GLSIRNRG 56
           M A A+S  A+ +F   S   T +   FS+RN  + I S L SPYG  SS  GLS ++ G
Sbjct: 1   MAAQAVSVPATATFPIASRRNTPSHLAFSHRNLCQ-IASNLSSPYGGHSSKFGLSSKSPG 59

Query: 57  LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 116
            PLK+DEK+      SY  I  K  NPP+ PAVMTPGGPLDLSSVLFRNRIIFIGQP+N+
Sbjct: 60  FPLKLDEKNTYDASTSYGAIEAKKGNPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNA 119

Query: 117 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 176
            VAQR ISQLVTLATID +ADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAAS
Sbjct: 120 QVAQRVISQLVTLATIDPNADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAAS 179

Query: 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
           Q A++LAGGEKGMRY+MPN+RIM++QPQSG GGHVEDV+RQVNEAV SRH
Sbjct: 180 QGALLLAGGEKGMRYSMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRH 229

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844024|ref|XP_002889893.1| hypothetical protein ARALYDRAFT_471314 [Arabidopsis lyrata subsp. lyrata] gi|297335735|gb|EFH66152.1| hypothetical protein ARALYDRAFT_471314 [Arabidopsis lyrata subsp. lyrata]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 180/230 (78%), Gaps = 9/230 (3%)

Query: 1   MVASAISA--SLSFSATSLNRTFASFFSN--RNSSRSIVSALPSPYGDSSSGGLSIRNRG 56
           M   AIS    LSFS+ + N    S+ S+  RN  R IVSALPSPYGDS   GLS    G
Sbjct: 1   MAGLAISPPLGLSFSSRTRNPKPTSYLSHNPRNPIRRIVSALPSPYGDSLKAGLSSNVSG 60

Query: 57  LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 116
            P+KID KD       + +I  K  NPP+MP+VMTPGGPLDLSSVLFRNRIIFIGQPIN+
Sbjct: 61  SPIKIDNKD-----PRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINA 115

Query: 117 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 176
            VAQR ISQLVTLA+ID+ +DILMYLNCPGGS YSVLAIYDCMSWIKPKVGTV FGVAAS
Sbjct: 116 QVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAAS 175

Query: 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
           Q A++LAGGEKGMRYAMPN R+M++QPQ+G GGHVEDV+RQVNEA+ +R 
Sbjct: 176 QGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQ 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TIGR_CMR|DET_0710	200	DET_0710 "ATP-dependent Clp pr	0.675	0.81	0.401	1e-27
TIGR_CMR|ECH_0901	199	ECH_0901 "ATP-dependent Clp pr	0.516	0.623	0.459	1.5e-26
TIGR_CMR|BA_5380	193	BA_5380 "ATP-dependent Clp pro	0.495	0.616	0.470	4e-26
TIGR_CMR|CHY_0325	195	CHY_0325 "ATP-dependent Clp pr	0.583	0.717	0.435	8.4e-26
TIGR_CMR|NSE_0752	201	NSE_0752 "ATP-dependent Clp pr	0.633	0.756	0.395	8.4e-26
TAIR|locus:2033344	309	CLPP3 "CLP protease proteolyti	0.620	0.482	0.382	8.4e-26
TIGR_CMR|CPS_3785	220	CPS_3785 "ATP-dependent Clp pr	0.583	0.636	0.407	1.4e-25
TIGR_CMR|SO_1794	202	SO_1794 "ATP-dependent Clp pro	0.633	0.752	0.403	1.4e-25
TAIR|locus:2163538	292	CLPP4 "CLP protease P4" [Arabi	0.558	0.458	0.417	1.4e-25
TIGR_CMR|APH_0970	197	APH_0970 "ATP-dependent Clp pr	0.629	0.766	0.401	3.6e-25

TIGR_CMR|DET_0710 DET_0710 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 65/162 (40%), Positives = 96/162 (59%)

Query:    75 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
             +IS +N  P ++ +        D+ S+L + RIIF+G  IN  VA   I+QL+ L   D 
Sbjct:     1 MISPENVVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDP 60

Query:   135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
             D DI +Y++ PGG I + LA+YD M  I+PKV T+C GVAAS A ++L  G KG RYA+P
Sbjct:    61 DKDISLYIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALP 120

Query:   195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
             NA I ++Q   G+ G   D++    E +  + +  + L+ HT
Sbjct:   121 NATIHMHQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHT 162

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|ECH_0901 ECH_0901 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 57/124 (45%), Positives = 82/124 (66%)

Query:    97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
             D+ S L + RIIFI  PI   +A   ++QL+ L + + + +I MY+N PGG + + L+IY
Sbjct:    19 DIYSRLLKERIIFITGPIEDQMASLIVAQLIFLESENPEKEICMYINSPGGVVTAGLSIY 78

Query:   157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
             D M +IKPKV T+C G AAS  +++LA GE GMRYA+PN+RIM++QP  G  G   D++ 
Sbjct:    79 DTMQYIKPKVSTLCLGQAASMGSLLLAAGEPGMRYALPNSRIMIHQPSGGFQGQATDIEI 138

Query:   217 QVNE 220
                E
Sbjct:   139 HAKE 142

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|BA_5380 BA_5380 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 56/119 (47%), Positives = 82/119 (68%)

Query:    97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
             D+ S L ++RII +G  I+  VA   +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct:    19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78

Query:   157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
             D M +IKP+V T+C G+AAS  A +LA GEKG RYA+PN+  M++QP  G+ G   +++
Sbjct:    79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEAMIHQPLGGAQGQATEIE 137

GO:0006508 "proteolysis" evidence=ISS

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|CHY_0325 CHY_0325 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 61/140 (43%), Positives = 84/140 (60%)

Query:    97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
             D+ S L ++R IFIG PI+  VA   I+Q++ L   D + DI +Y+N PGG I + +AIY
Sbjct:    20 DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGMAIY 79

Query:   157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
             D M +IKP V T+C G AAS  A +LA G KG R+++P ARIM++QP  G  G   D+  
Sbjct:    80 DTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDI 139

Query:   217 QVNEAVISRHVSLSFLLLHT 236
                E +  R +    L  HT
Sbjct:   140 HAREILRMRDMLNELLTKHT 159

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|NSE_0752 NSE_0752 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 66/167 (39%), Positives = 101/167 (60%)

Query:    85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
             L+P V+  TP G    D+ S L + R++F+  PI   +A   ++QL+ L   + D DI M
Sbjct:     3 LVPMVVDQTPRGERAYDIFSRLLKERVVFLTGPIEDGMASLIVAQLLFLEAENPDKDIFM 62

Query:   141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
             Y+N PGG + + L+IYD M +IKP V TVC G AAS A++ILA G +G R+A+P++R+M+
Sbjct:    63 YINSPGGVVTAGLSIYDTMQYIKPSVSTVCVGQAASAASLILASGAEGKRFALPHSRVMV 122

Query:   201 NQPQSGSGG-------HVEDV---KRQVNEAVISRHVSLSFLLLHTL 237
             +QP  G  G       HV+++   KR +NE +  +H   +   + TL
Sbjct:   123 HQPSGGVRGQATDMEIHVKEILQLKRMINE-IYQKHTGETIKKIETL 168

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TAIR|locus:2033344 CLPP3 "CLP protease proteolytic subunit 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 57/149 (38%), Positives = 89/149 (59%)

Query:    72 SYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLAT 131
             ++ + S   D+    P+ +     LD +++L R RI+F+G  ++ M A   ISQL+ L  
Sbjct:    60 NWDVSSFSIDSVAQSPSRLPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDA 119

Query:   132 IDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRY 191
              D + DI +++N PGGSI + + IYD M   K  V TVC G+AAS  A +LA G KG RY
Sbjct:   120 EDSERDITLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRY 179

Query:   192 AMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
              MPN+++M++QP   +GG   ++  ++ E
Sbjct:   180 CMPNSKVMIHQPLGTAGGKATEMSIRIRE 208

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009840 "chloroplastic endopeptidase Clp complex" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

TIGR_CMR|CPS_3785 CPS_3785 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 57/140 (40%), Positives = 83/140 (59%)

Query:    97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
             D+ S L + R+IF+   +   +A   I+QL+ L +   D DI +Y+N PGGS+ + +AIY
Sbjct:    43 DIYSRLLKERVIFLCGQVEDHMANLIIAQLLFLESESPDKDIYLYINSPGGSVTAGMAIY 102

Query:   157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
             D M +IKP + TVC G AAS  A +L+GGEKG RY +PNAR+M++QP  G  G   D + 
Sbjct:   103 DTMKFIKPNISTVCIGQAASMGAFLLSGGEKGKRYCLPNARVMIHQPLGGFQGQASDFEI 162

Query:   217 QVNEAVISRHVSLSFLLLHT 236
                E +  +      +  HT
Sbjct:   163 HAKEILFIKDKLNKLMAEHT 182

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|SO_1794 SO_1794 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 63/156 (40%), Positives = 91/156 (58%)

Query:    85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
             L+P V+  T  G    D+ S L + RIIF+   +   +A   ++QL+ L +   D DI +
Sbjct:    11 LVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFL 70

Query:   141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
             Y+N PGGS+ + +AIYD M +IKP V TVC G AAS  A +LAGGEKG R+ +PN+R+M+
Sbjct:    71 YINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMI 130

Query:   201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
             +QP  G  G   D+     E +  ++     L  HT
Sbjct:   131 HQPLGGFQGQASDIAIHAQEILGIKNKLNQMLADHT 166

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TAIR|locus:2163538 CLPP4 "CLP protease P4" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 56/134 (41%), Positives = 84/134 (62%)

Query:    93 GGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV 152
             G   D+  +L R RI+F+G  I+  VA   +SQL+ L   D   DI +++N PGGS+ + 
Sbjct:    75 GAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSAT 134

Query:   153 LAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVE 212
             +AIYD +  ++  V T+  G+AAS A+IIL  G KG R+AMPN RIM++QP  G+ G   
Sbjct:   135 MAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAI 194

Query:   213 DVKRQVNEAVISRH 226
             DV+ Q  E + +++
Sbjct:   195 DVEIQAKEVMHNKN 208

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009840 "chloroplastic endopeptidase Clp complex" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TIGR_CMR|APH_0970 APH_0970 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 63/157 (40%), Positives = 92/157 (58%)

Query:    85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
             L+P V+   G      D+ S L + RIIF+  PI   +A   ++QLV L   D + DI M
Sbjct:     3 LVPMVVEQTGRGERAYDIYSRLLKERIIFVTGPIEDEMASLIVAQLVFLEAEDPEKDISM 62

Query:   141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
             Y+N PGG + + L+IYD M +IKP V T+C G AAS  +++L  G  GMR A+PN+R+M+
Sbjct:    63 YINSPGGVVTAGLSIYDTMQYIKPNVATLCLGQAASMGSLLLCAGAPGMRCALPNSRVMI 122

Query:   201 NQPQSGSGGHVEDVKRQVNEAV-ISRHVSLSFLLLHT 236
             +QP  G  G   D++    E + I R ++  F+  HT
Sbjct:   123 HQPSGGFRGQATDIEIHAREILEIKRRLNEIFVR-HT 158

GO:0009368 "endopeptidase Clp complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SAA2	CLPP6_ARATH	3, ., 4, ., 2, 1, ., 9, 2	0.6986	0.8833	0.7822	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.963
3rd Layer	3.4.21.92	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
cd07017	171	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP)	3e-59
pfam00574	182	pfam00574, CLP_protease, Clp protease	9e-59
COG0740	200	COG0740, ClpP, Protease subunit of ATP-dependent C	1e-47
PRK00277	200	PRK00277, clpP, ATP-dependent Clp protease proteol	3e-47
PRK12553	207	PRK12553, PRK12553, ATP-dependent Clp protease pro	5e-44
TIGR00493	192	TIGR00493, clpP, ATP-dependent Clp endopeptidase,	7e-43
CHL00028	200	CHL00028, clpP, ATP-dependent Clp protease proteol	9e-39
PRK14513	201	PRK14513, PRK14513, ATP-dependent Clp protease pro	3e-37
PRK12551	196	PRK12551, PRK12551, ATP-dependent Clp protease pro	3e-37
PRK14514	221	PRK14514, PRK14514, ATP-dependent Clp protease pro	1e-30
PRK12552	222	PRK12552, PRK12552, ATP-dependent Clp protease-lik	2e-30
cd07013	162	cd07013, S14_ClpP, Caseinolytic protease (ClpP) is	4e-30
PRK14512	197	PRK14512, PRK14512, ATP-dependent Clp protease pro	4e-21
cd00394	161	cd00394, Clp_protease_like, Caseinolytic protease	1e-10
cd07016	160	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP)	3e-10

>gnl|CDD|132928 cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  184 bits (469), Expect = 3e-59
 Identities = 66/140 (47%), Positives = 90/140 (64%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L + RIIF+G PI+  VA   I+QL+ L + D    I +Y+N PGGS+ + LAIY
Sbjct: 1   DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIY 60

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D M +IKP V T+C G+AAS  A++LA G KG RYA+PN+RIM++QP  G+GG   D++ 
Sbjct: 61  DTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEI 120

Query: 217 QVNEAVISRHVSLSFLLLHT 236
           Q  E +  R      L  HT
Sbjct: 121 QAKEILRLRRRLNEILAKHT 140

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 171

>gnl|CDD|201316 pfam00574, CLP_protease, Clp protease

 Score =  183 bits (467), Expect = 9e-59
 Identities = 65/140 (46%), Positives = 87/140 (62%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L + RIIF+G  I+  VA   I+QL+ L   D D DI +Y+N PGGS+ + LAIY
Sbjct: 8   DIYSRLLKERIIFLGGEIDDEVANLIIAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIY 67

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D M +IKP V T+C G+AAS  + ILA G KG R+A+PNARIM++QP  G+ G   D++ 
Sbjct: 68  DTMQFIKPDVSTICLGLAASMGSFILAAGTKGKRFALPNARIMIHQPSGGAQGQASDIEI 127

Query: 217 QVNEAVISRHVSLSFLLLHT 236
           Q  E +  R         HT
Sbjct: 128 QAEEILKIRERLNEIYAEHT 147

The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Cyanophora parodoxa clpP-B has lost all of these active site residues and is therefore inactive. Some members contain one or two large insertions. Length = 182

>gnl|CDD|223811 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score =  155 bits (395), Expect = 1e-47
 Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 4/157 (2%)

Query: 84  PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
            L+P V+          D+ S L + RIIF+G  I   +A   ++QL+ L   D D DI 
Sbjct: 2   ALVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIY 61

Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
           +Y+N PGGS+ + LAIYD M +IKP V T+C G AAS  +++L  G+KG R+A+PNARIM
Sbjct: 62  LYINSPGGSVTAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIM 121

Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
           ++QP  G+ G   D++    E +  +         HT
Sbjct: 122 IHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHT 158

Length = 200

>gnl|CDD|178955 PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  154 bits (393), Expect = 3e-47
 Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 4/141 (2%)

Query: 84  PLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
            L+P V+          D+ S L + RIIF+G  +   +A   ++QL+ L   D D DI 
Sbjct: 6   NLVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIY 65

Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
           +Y+N PGGS+ + LAIYD M +IKP V T+C G AAS  A +LA G KG R+A+PN+RIM
Sbjct: 66  LYINSPGGSVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIM 125

Query: 200 LNQPQSGSGGHVEDVKRQVNE 220
           ++QP  G  G   D++    E
Sbjct: 126 IHQPLGGFQGQATDIEIHARE 146

Length = 200

>gnl|CDD|237133 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  146 bits (371), Expect = 5e-44
 Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 2/126 (1%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D  + LF  RIIF+G  ++   A   ++QL+ L +ID D DI +Y+N PGGS+ +  AIY
Sbjct: 27  DPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIY 86

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP--QSGSGGHVEDV 214
           D + +I+P V TVC G AAS  A++LA G  G R+A+PNARI+++QP    G  G   D+
Sbjct: 87  DTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDL 146

Query: 215 KRQVNE 220
           + Q  E
Sbjct: 147 EIQARE 152

Length = 207

>gnl|CDD|188055 TIGR00493, clpP, ATP-dependent Clp endopeptidase, proteolytic subunit ClpP

 Score =  143 bits (362), Expect = 7e-43
 Identities = 62/140 (44%), Positives = 88/140 (62%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L + RIIF+   +N  VA   ++QL+ L   D + DI +Y+N PGGSI + LAIY
Sbjct: 19  DIYSRLLKERIIFLSGEVNDNVANSIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIY 78

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D M +IKP V T+C G AAS  A +LA G KG R+++PN+RIM++QP  G+ G   D++ 
Sbjct: 79  DTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQATDIEI 138

Query: 217 QVNEAVISRHVSLSFLLLHT 236
           Q NE +  + +    L  HT
Sbjct: 139 QANEILRLKGLLNDILAEHT 158

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores at least 370 by This model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 192

>gnl|CDD|214340 CHL00028, clpP, ATP-dependent Clp protease proteolytic subunit

 Score =  133 bits (336), Expect = 9e-39
 Identities = 52/119 (43%), Positives = 79/119 (66%), Gaps = 1/119 (0%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           DL + L+R R++F+GQ ++  +A + I  +V L+  D+  D+ +++N PGGS+ S LAIY
Sbjct: 22  DLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIY 81

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG-SGGHVEDV 214
           D M ++KP V T+C G+AAS A+ ILAGGE   R A P+AR+M++QP S    G   + 
Sbjct: 82  DTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEF 140

Length = 200

>gnl|CDD|237742 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  129 bits (325), Expect = 3e-37
 Identities = 61/157 (38%), Positives = 96/157 (61%), Gaps = 4/157 (2%)

Query: 84  PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
            ++P V+   G      D+ S L ++RIIF+G PI S +A   ++QL+ L + + + +I 
Sbjct: 2   SVIPYVIEQTGRGERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQ 61

Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
           MY+NCPGG +Y+ LAIYD M +IK  V T+C G+A S  +++L  G+KG R A+PN+RIM
Sbjct: 62  MYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIM 121

Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
           ++Q  +G  G+  D++ Q  E +  R   +     HT
Sbjct: 122 IHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHT 158

Length = 201

>gnl|CDD|139060 PRK12551, PRK12551, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  128 bits (324), Expect = 3e-37
 Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)

Query: 85  LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
           ++P V+   G      D+ S L R RIIF+G+P+ S  A R ++QL+ L   D + DI +
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYL 60

Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
           Y+N PGGS+Y  L I+D M  +KP V TVC G+AAS  A +L  G KG R ++ ++RIM+
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMI 120

Query: 201 NQPQSGSGGHVEDVKRQVNE 220
           +QP  G+ G   D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140

Length = 196

>gnl|CDD|184722 PRK14514, PRK14514, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  112 bits (282), Expect = 1e-30
 Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 9/145 (6%)

Query: 96  LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
           +D+ S L  +RIIF+G  I+   A    +QL+ L ++D   DI +Y+N PGGS+Y+ L I
Sbjct: 45  MDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGI 104

Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
           YD M +I   V T+C G+AAS A+++L  G KG R A+P++R+M++QP  G+ G   D++
Sbjct: 105 YDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIE 164

Query: 216 RQVNE---------AVISRHVSLSF 231
               E          +I+ H    F
Sbjct: 165 ITAREIQKLKKELYTIIADHSGTPF 189

Length = 221

>gnl|CDD|183588 PRK12552, PRK12552, ATP-dependent Clp protease-like protein; Reviewed

 Score =  112 bits (282), Expect = 2e-30
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 21/165 (12%)

Query: 91  TPGGPLDLSSVLFRNRIIFIGQPINS----------MVAQRAISQLVTLATIDEDADILM 140
           TP  P DL S+L + RI+++G P+ S           V +  I+QL+ L   D +  I  
Sbjct: 18  TP--PPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYF 75

Query: 141 YLNCPGGSIYS---------VLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRY 191
           Y+N  G S Y+           AI D M +IKP V T+C G A   AA+IL+ G KG R 
Sbjct: 76  YINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRA 135

Query: 192 AMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
           ++P+A I+L+QP+SG+ G   D++ +  E + ++   L  L  +T
Sbjct: 136 SLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNT 180

Length = 222

>gnl|CDD|132924 cd07013, S14_ClpP, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  109 bits (274), Expect = 4e-30
 Identities = 41/131 (31%), Positives = 73/131 (55%)

Query: 106 RIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPK 165
           R I +   +  + A +  +QL+ L  ++ + DI +Y+N PGG +++ +AIYD + +IK  
Sbjct: 1   REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKAD 60

Query: 166 VGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISR 225
           V T+  G+AAS  ++I   G KG R+ +PNA +M++QP  G+ G   D++   +  +   
Sbjct: 61  VVTIIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVE 120

Query: 226 HVSLSFLLLHT 236
              +S     T
Sbjct: 121 GNLVSAYAHKT 131

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 162

>gnl|CDD|237741 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 87.2 bits (216), Expect = 4e-21
 Identities = 40/117 (34%), Positives = 69/117 (58%)

Query: 104 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK 163
           ++R I I   IN  +++    +++ L  +D    I +Y++  GG I +  AI++ + ++K
Sbjct: 22  KSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVK 81

Query: 164 PKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
           PKV T+  G+ AS AA+I    +K  R+++PNAR +L+QP SG  G   D++   NE
Sbjct: 82  PKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANE 138

Length = 197

>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an ATP-dependent protease

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKV 166
           +IFI   I  + A +  +Q+      +    I++ +N PGG + + + I D +   +  V
Sbjct: 1   VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPV 60

Query: 167 GTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
                G AAS    I     K      P  R+  + P  G GG          +    R 
Sbjct: 61  IAYVGGQAASAGYYIATAANK--IVMAPGTRVGSHGPIGGYGG----NGNPTAQEADQRI 114

Query: 227 VS 228
           + 
Sbjct: 115 IL 116

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Another family included in this class of enzymes is the signal peptide peptidase A (SppA; S49) which is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Mutagenesis studies suggest that the catalytic center of SppA comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain. Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain. The third family included in this hierarchy is nodulation formation efficiency D (NfeD) which is a membrane-bound Clp-class protease and only found in bacteria and archaea. Majority of the NfeD genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named stomatin operon partner protein (STOPP). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 from Pyrococcus horikoshii has been shown to possess serine protease activity having a Ser-Lys catalytic dyad. Length = 161

>gnl|CDD|132927 cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 33/92 (35%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query: 129 LATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII-LAGGEK 187
           L  + +D+DI + +N PGG +++ LAIY+ +   K KV     G+AAS A++I +AG E 
Sbjct: 24  LDALGDDSDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGDEV 83

Query: 188 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 219
            M    PNA +M++ P +G+ G+ +D+++  +
Sbjct: 84  EMP---PNAMLMIHNPSTGAAGNADDLRKAAD 112

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	100.0
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	100.0
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	100.0
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	100.0
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	100.0
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	100.0
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	100.0
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	100.0
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	100.0
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.94
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.88
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.88
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.81
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.73
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.33
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.23
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	99.17
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.16
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.1
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.09
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	98.96
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	98.87
PRK11778	330	putative inner membrane peptidase; Provisional	98.68
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	98.54
PRK10949	618	protease 4; Provisional	98.47
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	98.33
COG3904	245	Predicted periplasmic protein [Function unknown]	97.72
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	97.29
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	96.6
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	96.49
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	96.46
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	96.44
PRK06688	259	enoyl-CoA hydratase; Provisional	96.38
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	96.23
PRK07511	260	enoyl-CoA hydratase; Provisional	96.22
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	96.2
PRK08258	277	enoyl-CoA hydratase; Provisional	96.18
PRK06072	248	enoyl-CoA hydratase; Provisional	96.14
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	95.98
PRK06210	272	enoyl-CoA hydratase; Provisional	95.97
PRK06495	257	enoyl-CoA hydratase; Provisional	95.97
PRK05869	222	enoyl-CoA hydratase; Validated	95.93
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	95.91
PRK10949	618	protease 4; Provisional	95.87
PRK06023	251	enoyl-CoA hydratase; Provisional	95.82
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	95.8
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	95.8
PRK05981	266	enoyl-CoA hydratase; Provisional	95.79
PRK07509	262	enoyl-CoA hydratase; Provisional	95.77
PRK06143	256	enoyl-CoA hydratase; Provisional	95.77
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	95.76
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	95.75
PRK07468	262	enoyl-CoA hydratase; Provisional	95.71
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	95.7
PRK06190	258	enoyl-CoA hydratase; Provisional	95.67
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	95.67
PRK05864	276	enoyl-CoA hydratase; Provisional	95.66
PLN02600	251	enoyl-CoA hydratase	95.61
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	95.54
PRK08260	296	enoyl-CoA hydratase; Provisional	95.52
PRK07854	243	enoyl-CoA hydratase; Provisional	95.49
PRK08138	261	enoyl-CoA hydratase; Provisional	95.48
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	95.46
PRK09076	258	enoyl-CoA hydratase; Provisional	95.39
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	95.35
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	95.33
PLN02921	327	naphthoate synthase	95.32
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	95.29
PRK08150	255	enoyl-CoA hydratase; Provisional	95.22
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	95.16
PRK05995	262	enoyl-CoA hydratase; Provisional	95.14
PRK05980	260	enoyl-CoA hydratase; Provisional	95.11
PRK05870	249	enoyl-CoA hydratase; Provisional	95.1
PRK06142	272	enoyl-CoA hydratase; Provisional	95.09
PRK07260	255	enoyl-CoA hydratase; Provisional	95.08
PLN02888	265	enoyl-CoA hydratase	95.07
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	95.07
PRK07327	268	enoyl-CoA hydratase; Provisional	95.05
PRK07938	249	enoyl-CoA hydratase; Provisional	95.01
PRK06563	255	enoyl-CoA hydratase; Provisional	94.98
PRK09245	266	enoyl-CoA hydratase; Provisional	94.95
PRK08140	262	enoyl-CoA hydratase; Provisional	94.9
PRK07657	260	enoyl-CoA hydratase; Provisional	94.73
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	94.73
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	94.73
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	94.69
PRK06127	269	enoyl-CoA hydratase; Provisional	94.68
PRK07658	257	enoyl-CoA hydratase; Provisional	94.66
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	94.64
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	94.59
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	94.59
PRK08139	266	enoyl-CoA hydratase; Validated	94.58
PRK08321	302	naphthoate synthase; Validated	94.55
PRK08272	302	enoyl-CoA hydratase; Provisional	94.53
PRK08290	288	enoyl-CoA hydratase; Provisional	94.52
PRK06494	259	enoyl-CoA hydratase; Provisional	94.45
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	94.35
PRK06144	262	enoyl-CoA hydratase; Provisional	94.31
PRK07827	260	enoyl-CoA hydratase; Provisional	94.14
PRK08788	287	enoyl-CoA hydratase; Validated	94.07
PRK12478	298	enoyl-CoA hydratase; Provisional	94.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	93.94
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	93.91
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	93.84
PRK07659	260	enoyl-CoA hydratase; Provisional	93.83
PRK05862	257	enoyl-CoA hydratase; Provisional	93.77
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	93.65
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	93.58
PRK08252	254	enoyl-CoA hydratase; Provisional	93.54
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	93.22
PRK06213	229	enoyl-CoA hydratase; Provisional	93.18
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	93.14
PRK07799	263	enoyl-CoA hydratase; Provisional	93.02
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	92.51
PRK08259	254	enoyl-CoA hydratase; Provisional	92.2
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	91.19
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	91.14
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	91.02
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	90.94
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	90.94
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.38
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	89.81
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	89.09
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	88.65
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	87.56
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	85.74
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	85.08
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	85.07
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	84.47
PF06833	234	MdcE: Malonate decarboxylase gamma subunit (MdcE);	80.11

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-53  Score=379.39  Aligned_cols=146  Identities=46%  Similarity=0.758  Sum_probs=144.8

Q ss_pred             CCCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcce
Q 026362           94 GPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus        94 ~~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|+|||++|||+|||||+++||+++++.+++||+||+.+|++++|++|||||||++++|+||||+|++++++|.|+|.|+
T Consensus        81 ~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~Tic~G~  160 (275)
T KOG0840|consen   81 RPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVSTICVGL  160 (275)
T ss_pred             CcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCceeeehhh
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      |||||+|||++|+||+|+++||+++|||||.+++.|++.||.++|+|+.+.++.+.++|++|||+|
T Consensus       161 Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~  226 (275)
T KOG0840|consen  161 AASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQP  226 (275)
T ss_pred             HHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999997

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=100.00  E-value=7.1e-51  Score=353.87  Aligned_cols=156  Identities=40%  Similarity=0.694  Sum_probs=149.3

Q ss_pred             ccceeeCCC--C--CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHh
Q 026362           85 LMPAVMTPG--G--PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS  160 (240)
Q Consensus        85 ~~p~~~~~~--~--~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~  160 (240)
                      +.|.++++.  +  ..|+|++|+++|+||++|+|++++++.+++||++|++++++++|+||||||||+|++|++|||+|+
T Consensus         3 ~~~~~~e~~~~~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~   82 (200)
T COG0740           3 LVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQ   82 (200)
T ss_pred             CCccccCcccCCCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHH
Confidence            456666542  2  689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 026362          161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLNDS  240 (240)
Q Consensus       161 ~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~~  240 (240)
                      +++++|+|+|.|+|||||++|+++|++|||+++|||++|||||+++++|+++|++++|+|++++++++.++|+++||++.
T Consensus        83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~  162 (200)
T COG0740          83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTL  162 (200)
T ss_pred             hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999974

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=1.5e-48  Score=340.03  Aligned_cols=145  Identities=40%  Similarity=0.721  Sum_probs=143.4

Q ss_pred             CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      |+|+|++||++|||||+++||+++++.++++|++|+.++++++|+||||||||+|++|++|||+|++++++|+|+|+|+|
T Consensus        17 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G~A   96 (201)
T PRK14513         17 MYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGIA   96 (201)
T ss_pred             ccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEeee
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      ||||++|+++|++|||+++|||++|||||+++++|++.|++++++||+++++.+.++|+++||++
T Consensus        97 aS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~  161 (201)
T PRK14513         97 MSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLP  161 (201)
T ss_pred             hhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999987

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=4.2e-48  Score=341.49  Aligned_cols=145  Identities=37%  Similarity=0.651  Sum_probs=143.4

Q ss_pred             CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      ++|+|++||++|||||+++||+++++.+++||++|+.++++++|+||||||||+|++|++|||+|++++++|+|+|.|+|
T Consensus        44 ~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~G~A  123 (221)
T PRK14514         44 QMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTGMA  123 (221)
T ss_pred             ccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEEEEe
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      ||||++|+++|++|||+++|||++|||||++++.|++.|++++++|++++++.+.++|+++||++
T Consensus       124 AS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~  188 (221)
T PRK14514        124 ASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTP  188 (221)
T ss_pred             hhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999987

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=4.8e-47  Score=329.27  Aligned_cols=145  Identities=40%  Similarity=0.683  Sum_probs=143.2

Q ss_pred             CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      ++|+|++||++||||++++||++++++++++|++|+.++++++|+||||||||+|++|++|||+|++++++|+|+|+|+|
T Consensus        15 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G~A   94 (196)
T PRK12551         15 AFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGLA   94 (196)
T ss_pred             ccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      ||||++|+++|++|+|+++|||++|||||+++..|++.|+++++++|+++++.+.++|+++||++
T Consensus        95 aS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~  159 (196)
T PRK12551         95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQP  159 (196)
T ss_pred             hhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999987

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=100.00  E-value=6.8e-47  Score=329.13  Aligned_cols=145  Identities=38%  Similarity=0.644  Sum_probs=143.2

Q ss_pred             CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      |.|+|++||++|||||+++||+++++.+++||++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|+|
T Consensus        20 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~Tv~~G~A   99 (200)
T CHL00028         20 WVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFVKPDVHTICLGLA   99 (200)
T ss_pred             cccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEeh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSG-SGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g-~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +|||++|+++|++|+|+++|||++|||||+++ ..|++.|+++++++|+++++.+.++|+++||++
T Consensus       100 aS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~  165 (200)
T CHL00028        100 ASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKP  165 (200)
T ss_pred             HHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999999998 899999999999999999999999999999987

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=100.00  E-value=3.6e-47  Score=335.68  Aligned_cols=145  Identities=38%  Similarity=0.626  Sum_probs=141.9

Q ss_pred             CCChhhhhccCcEEEEccccChh----------HHHHHHHHHHhhhccCCCCCceEEEeCCCcc---------HhHHHHH
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSM----------VAQRAISQLVTLATIDEDADILMYLNCPGGS---------IYSVLAI  155 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~----------~a~~~iaqLl~L~~~d~~~~I~l~INSPGGs---------V~aGlaI  155 (240)
                      +.|+|++||++|||||+++||++          +++.+++||++|+.++++++|+||||||||+         +++|++|
T Consensus        20 ~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaI   99 (222)
T PRK12552         20 PPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAI   99 (222)
T ss_pred             CcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHH
Confidence            58999999999999999999999          9999999999999999999999999999988         6788999


Q ss_pred             HHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026362          156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLH  235 (240)
Q Consensus       156 yd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~  235 (240)
                      ||+|++++++|+|+|+|+|||||++|+++|+||+|+++|||++|||||+++++|++.|++++++||+++++.+.++|+++
T Consensus       100 yD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~  179 (222)
T PRK12552        100 CDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRN  179 (222)
T ss_pred             HHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC
Q 026362          236 TLND  239 (240)
Q Consensus       236 TG~~  239 (240)
                      ||++
T Consensus       180 TG~~  183 (222)
T PRK12552        180 TGQT  183 (222)
T ss_pred             HCCC
Confidence            9987

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=100.00  E-value=3.7e-43  Score=302.92  Aligned_cols=145  Identities=42%  Similarity=0.707  Sum_probs=142.8

Q ss_pred             CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      ++|+|++|+++|+||++|+||++++++++++|++|+.+++.++|+||||||||++++|++|||+|++++++|+|+|+|+|
T Consensus        16 ~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G~A   95 (191)
T TIGR00493        16 SFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGQA   95 (191)
T ss_pred             cccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEEee
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +|||++|+++|++++|+++|||++|||||+++..|++.|+++++++++++++.+.++|+++||+|
T Consensus        96 aSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~  160 (191)
T TIGR00493        96 ASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQS  160 (191)
T ss_pred             ccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999987

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=1.2e-41  Score=295.35  Aligned_cols=146  Identities=29%  Similarity=0.446  Sum_probs=142.4

Q ss_pred             CCCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcce
Q 026362           94 GPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus        94 ~~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      ++.+++++|+++|+|||+|+||+++++.|+++|++|+.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|+
T Consensus        12 ~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~   91 (197)
T PRK14512         12 GIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGL   91 (197)
T ss_pred             CcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEee
Confidence            46789999999999999999999999999999999998888899999999999999999999999999999999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      |+|||++|+++|++|+|+++|||++|||||++++.|++.|+++++++++++++.+.++|+++||++
T Consensus        92 AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~  157 (197)
T PRK14512         92 VASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQE  157 (197)
T ss_pred             eHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            999999999999999999999999999999999999999999999999999999999999999987

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=3.2e-41  Score=292.58  Aligned_cols=145  Identities=41%  Similarity=0.687  Sum_probs=142.8

Q ss_pred             CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      |+|++++|+++|+|||+|+||+++++.++++|++|+.+++.++|+||||||||++++|++|||+|++++.+|+|+|.|.|
T Consensus        21 ~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~a  100 (200)
T PRK00277         21 SYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPDVSTICIGQA  100 (200)
T ss_pred             cccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEEEeEe
Confidence            89999999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +|+|++|+++|++++|+++||+++|||||+++.+|++.|+++++++++++++.+.++|+++||++
T Consensus       101 aS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~  165 (200)
T PRK00277        101 ASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQP  165 (200)
T ss_pred             ccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999987

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=2.9e-40  Score=288.05  Aligned_cols=145  Identities=41%  Similarity=0.674  Sum_probs=141.7

Q ss_pred             CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      +.|++++|+++|+|||+|+||+++++.|+++|++++.+++.++|+||||||||++++|++|||+|+.++.+|+|+|.|.|
T Consensus        25 ~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~a  104 (207)
T PRK12553         25 ESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQA  104 (207)
T ss_pred             cccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEeeh
Confidence            68999999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQ--SGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~--~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +|||++|+++|++|+|++.|||+||||||+  ++.+|++.|+++++++++++++.+.++|+++||++
T Consensus       105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~  171 (207)
T PRK12553        105 ASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQS  171 (207)
T ss_pred             hhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999  56899999999999999999999999999999986

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=3.3e-40  Score=278.93  Aligned_cols=145  Identities=39%  Similarity=0.591  Sum_probs=139.0

Q ss_pred             CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      |+|+|++|+++|+|||+|+||+++++.++++|++|+.+++.++|+|+||||||+|++|++|||+|+.++.+|+|+|.|.|
T Consensus         6 ~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G~a   85 (182)
T PF00574_consen    6 WYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLGLA   85 (182)
T ss_dssp             EEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEEEE
T ss_pred             EEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeCcc
Confidence            89999999999999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +|||++|+++|++++|++.|||+||+|+|+.+..|++.|+++++++++++++.+.++|+++||++
T Consensus        86 aSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~  150 (182)
T PF00574_consen   86 ASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLS  150 (182)
T ss_dssp             ETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred             ccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=1.2e-38  Score=269.03  Aligned_cols=143  Identities=46%  Similarity=0.761  Sum_probs=140.2

Q ss_pred             ChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceech
Q 026362           97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS  176 (240)
Q Consensus        97 dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS  176 (240)
                      |++++|+++|+||++|+|+++++++++++|++++.+++.++|+||||||||++++|++|||.|+.++.+|+|+|.|+|+|
T Consensus         1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS   80 (171)
T cd07017           1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS   80 (171)
T ss_pred             ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence            78999999999999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +|++|+++|++|+|++.|||++|||+|+++..|++.|+++++++++++++.+.++|+++||++
T Consensus        81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~  143 (171)
T cd07017          81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQP  143 (171)
T ss_pred             HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999999999999999987

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=1.3e-36  Score=255.35  Aligned_cols=134  Identities=31%  Similarity=0.520  Sum_probs=131.6

Q ss_pred             cEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCC
Q 026362          106 RIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGG  185 (240)
Q Consensus       106 RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG  185 (240)
                      |+|||.|+|++.+++.|+++|++|+.+++.++|.||||||||+++++++|||+|+.++.+|+|+|.|+|+|+|++|+++|
T Consensus         1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~   80 (162)
T cd07013           1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG   80 (162)
T ss_pred             CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence            78999999999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          186 EKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       186 ~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      ++|+|+++||+++|||||+++..|++.|++++++++++.++.+.++|+++||++
T Consensus        81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~  134 (162)
T cd07013          81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQS  134 (162)
T ss_pred             CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            999999999999999999999999999999999999999999999999999987

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.94  E-value=4.1e-26  Score=189.31  Aligned_cols=128  Identities=28%  Similarity=0.384  Sum_probs=122.0

Q ss_pred             EEEEccccCh---hHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHc
Q 026362          107 IIFIGQPINS---MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA  183 (240)
Q Consensus       107 IIfl~g~Id~---~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~  183 (240)
                      -|++.|+|++   .+++++.+.|.+++.+   ++|.|+||||||+++++++|+|.|+.++.||.+++.|.|+|+|++|++
T Consensus         2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~   78 (160)
T cd07016           2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM   78 (160)
T ss_pred             EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence            4799999999   7999999999988653   799999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          184 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       184 aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +|++  |++.|+++||+|+|.++..|+..+++++.++++++++.+.+.|++++|++
T Consensus        79 a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~  132 (160)
T cd07016          79 AGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLS  132 (160)
T ss_pred             cCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9996  99999999999999999999999999999999999999999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.88  E-value=6.9e-22  Score=168.84  Aligned_cols=124  Identities=19%  Similarity=0.121  Sum_probs=110.1

Q ss_pred             EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEc---ceechHHHHHHc
Q 026362          107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCF---GVAASQAAIILA  183 (240)
Q Consensus       107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~---G~AaS~aslIl~  183 (240)
                      +|-+.|.|++.++..+...|...+ +++.+.|.|+||||||+++++++|||+|+..+.||.|+|.   |+|+|+|++|++
T Consensus         3 vi~i~G~I~~~~~~~l~~~l~~A~-~~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~   81 (172)
T cd07015           3 VAQIKGQITSYTYDQFDRYITIAE-QDNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL   81 (172)
T ss_pred             EEEEeeEECHhHHHHHHHHHHHHh-cCCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence            467889999988877777666544 4567899999999999999999999999999999999999   999999999999


Q ss_pred             CCCCCcEEeccCceEeeecCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          184 GGEKGMRYAMPNARIMLNQPQSGSGGH-----VEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       184 aG~kgkR~a~PnA~iMIHqP~~g~~G~-----a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +|++  |++.|+++++.|+|..+ .|+     +.|.+.+.+++.++|+     |++++|++
T Consensus        82 a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~  134 (172)
T cd07015          82 GSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRN  134 (172)
T ss_pred             hcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcC
Confidence            9997  99999999999999865 366     6788999998888888     99999986

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.88  E-value=7.9e-22  Score=162.81  Aligned_cols=131  Identities=21%  Similarity=0.224  Sum_probs=122.9

Q ss_pred             EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCCC
Q 026362          107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE  186 (240)
Q Consensus       107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~  186 (240)
                      +|++.|+|++.+..++++.|..++.+++.+.|.|++|||||++.++..|++.|+.++.||.+++.|.|+|+|.+|+++|+
T Consensus         1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d   80 (161)
T cd00394           1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN   80 (161)
T ss_pred             CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence            58999999999999999999999987778999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEeccCceEeeecCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          187 KGMRYAMPNARIMLNQPQSGSGGHV--EDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       187 kgkR~a~PnA~iMIHqP~~g~~G~a--~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +  |++.|+++|++|+|..+..|..  .+.+...+.++.+.+.+.+.+++++|++
T Consensus        81 ~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~  133 (161)
T cd00394          81 K--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQT  133 (161)
T ss_pred             E--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            6  9999999999999998766554  7888888999999999999999999976

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.81  E-value=6.4e-19  Score=150.67  Aligned_cols=129  Identities=17%  Similarity=0.108  Sum_probs=110.0

Q ss_pred             EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEc---ceechHHHHHHc
Q 026362          107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCF---GVAASQAAIILA  183 (240)
Q Consensus       107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~---G~AaS~aslIl~  183 (240)
                      +|.|.|+|++..+..+..+|..++.+ +.+.|.|+||||||+++++..||+.|+.++.||.+.|.   |.|+|+|++|++
T Consensus         3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial   81 (187)
T cd07020           3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL   81 (187)
T ss_pred             EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence            57889999999999999999988854 47889999999999999999999999999999999998   999999999999


Q ss_pred             CCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          184 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       184 aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +||+  |++.|+++|++|+|..+..+...+...+.+.+..++. ....|++++|++
T Consensus        82 a~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~  134 (187)
T cd07020          82 AAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRN  134 (187)
T ss_pred             hCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCC
Confidence            9997  9999999999999985544433445555566666655 477788888874

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.73  E-value=8.4e-17  Score=137.86  Aligned_cols=125  Identities=21%  Similarity=0.205  Sum_probs=102.3

Q ss_pred             EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCCC
Q 026362          107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE  186 (240)
Q Consensus       107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~  186 (240)
                      +|.+.|+|++..+..+...|.....+ +.+.|.|+||||||.++++..||+.|+..+.||.+++.|.|+|+|++|+++|+
T Consensus         3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d   81 (178)
T cd07021           3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD   81 (178)
T ss_pred             EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence            46789999998888777777666543 47899999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          187 KGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       187 kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +  +++.|+++++.|.|.....++..+     +.+......+.+-|++++|++
T Consensus        82 ~--i~m~p~a~iG~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~  127 (178)
T cd07021          82 E--IYMAPGATIGAAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRD  127 (178)
T ss_pred             e--EEECCCCeEecCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCC
Confidence            7  999999999999999765554322     122233334445588888875

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.33  E-value=1.8e-11  Score=105.86  Aligned_cols=131  Identities=21%  Similarity=0.135  Sum_probs=106.1

Q ss_pred             EEEEccccC---hhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcC---CCeEEEEcceechHHHH
Q 026362          107 IIFIGQPIN---SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK---PKVGTVCFGVAASQAAI  180 (240)
Q Consensus       107 IIfl~g~Id---~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~---~~V~Tvv~G~AaS~asl  180 (240)
                      +|++.|+|+   ..+...+..+|..++.++..+.|.|++|||||++..+..|++.++.++   .||.+++.|.|+|+|..
T Consensus         4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~   83 (208)
T cd07023           4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYY   83 (208)
T ss_pred             EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHH
Confidence            578999999   788999999999998877789999999999999999999999887664   69999999999999999


Q ss_pred             HHcCCCCCcEEeccCceE------eee------------cCCCCCCC------------CHHHHHHHHHHHHHHHHHHHH
Q 026362          181 ILAGGEKGMRYAMPNARI------MLN------------QPQSGSGG------------HVEDVKRQVNEAVISRHVSLS  230 (240)
Q Consensus       181 Il~aG~kgkR~a~PnA~i------MIH------------qP~~g~~G------------~a~di~~~a~eL~~~r~~i~~  230 (240)
                      |+++|++  |++.|++++      |.|            ++.....|            ..++.+..-+.|+.+.+.+.+
T Consensus        84 lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~  161 (208)
T cd07023          84 IAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVD  161 (208)
T ss_pred             HHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999996  999999988      444            22211112            223555666677778888888


Q ss_pred             HHHHHhCCC
Q 026362          231 FLLLHTLND  239 (240)
Q Consensus       231 iyA~~TG~~  239 (240)
                      ..++.-|++
T Consensus       162 ~Va~~R~~~  170 (208)
T cd07023         162 VVAEGRGMS  170 (208)
T ss_pred             HHHhcCCCC
Confidence            888877754

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.23  E-value=2.5e-10  Score=99.13  Aligned_cols=89  Identities=21%  Similarity=0.269  Sum_probs=80.0

Q ss_pred             EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcC--CCeEEEEcceechHHHHHHcC
Q 026362          107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK--PKVGTVCFGVAASQAAIILAG  184 (240)
Q Consensus       107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~--~~V~Tvv~G~AaS~aslIl~a  184 (240)
                      +|.+.|.|+ .+...+...|..+..++..+.|.|.+|||||++..+..|++.|+.++  .||.+++.|.|+|+|.+|+++
T Consensus         4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a   82 (207)
T TIGR00706         4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA   82 (207)
T ss_pred             EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence            568888897 55678888888887666678899999999999999999999999998  899999999999999999999


Q ss_pred             CCCCcEEeccCceE
Q 026362          185 GEKGMRYAMPNARI  198 (240)
Q Consensus       185 G~kgkR~a~PnA~i  198 (240)
                      |++  |++.|++.+
T Consensus        83 aD~--i~a~p~a~v   94 (207)
T TIGR00706        83 ADE--IVANPGTIT   94 (207)
T ss_pred             CCE--EEECCCCeE
Confidence            997  999999875

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.17  E-value=8.3e-11  Score=108.88  Aligned_cols=76  Identities=21%  Similarity=0.202  Sum_probs=67.7

Q ss_pred             HHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCC--CeEEEEcceechHHHHHHcCCCCCcEEeccCce
Q 026362          120 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKP--KVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR  197 (240)
Q Consensus       120 ~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~--~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~  197 (240)
                      +.+.+.|..+...+..+.|.|.||||||++.+...||+.|+.++.  ||++++.++|||.|.+|.+++++  .++.|++.
T Consensus        83 ~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aAd~--I~a~p~si  160 (317)
T COG0616          83 DDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAADK--IVADPSSI  160 (317)
T ss_pred             HHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccCCE--EEecCCce
Confidence            355566666777677899999999999999999999999999987  49999999999999999999997  89999885

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.16  E-value=5.2e-10  Score=94.49  Aligned_cols=113  Identities=14%  Similarity=-0.004  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhh---cCCCeEEEEcceechHHHHHHcCCCCCcEEecc
Q 026362          118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW---IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP  194 (240)
Q Consensus       118 ~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~---~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~P  194 (240)
                      +.+.+...|..++..+..+-|.|.+|||||++.....+++.++.   .+.||.+++.|.|+|.|..|+++|+.  |++.|
T Consensus        23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~  100 (177)
T cd07014          23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANP  100 (177)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECC
Confidence            45688888888887666788999999999999887777776654   46899999999999999999999997  99999


Q ss_pred             CceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       195 nA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +++|++|.++.+       ....-..++.+.+.+.+.+++..|++
T Consensus       101 ~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~  138 (177)
T cd07014         101 STLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHST  138 (177)
T ss_pred             CCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999976654       12223467788888888888888764

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.10  E-value=1.3e-09  Score=108.31  Aligned_cols=131  Identities=17%  Similarity=0.082  Sum_probs=99.2

Q ss_pred             EEEEccccChh-------HHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhc---CCCeEEEEcceech
Q 026362          107 IIFIGQPINSM-------VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAAS  176 (240)
Q Consensus       107 IIfl~g~Id~~-------~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~---~~~V~Tvv~G~AaS  176 (240)
                      +|++.|+|.+.       ..+.+.++|..+..++..+.|.|+||||||+++++..|++.|+..   +.||.+.+.|+|+|
T Consensus       312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS  391 (584)
T TIGR00705       312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS  391 (584)
T ss_pred             EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence            67888888742       245667777666665567899999999999999999999999755   37899999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceE------eeecCC---------------CC--------CCCCHHHHHHHHHHHHHHHHH
Q 026362          177 QAAIILAGGEKGMRYAMPNARI------MLNQPQ---------------SG--------SGGHVEDVKRQVNEAVISRHV  227 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~i------MIHqP~---------------~g--------~~G~a~di~~~a~eL~~~r~~  227 (240)
                      .|.+|.++|++  +++.|++.+      +.+...               ++        -..+.++.+...+.++...+.
T Consensus       392 ggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~  469 (584)
T TIGR00705       392 GGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR  469 (584)
T ss_pred             HHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999996  999999977      555211               00        012456666677777777777


Q ss_pred             HHHHHHHHhCCC
Q 026362          228 SLSFLLLHTLND  239 (240)
Q Consensus       228 i~~iyA~~TG~~  239 (240)
                      +.+..++.-|++
T Consensus       470 F~~~Va~~R~l~  481 (584)
T TIGR00705       470 FLSVVSAGRNLT  481 (584)
T ss_pred             HHHHHHhhCCCC
Confidence            777777665554

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.09  E-value=2.8e-09  Score=92.97  Aligned_cols=121  Identities=17%  Similarity=0.163  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcC--CCeEEEEcceechHHHHHHcCCCCCcEEecc
Q 026362          117 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK--PKVGTVCFGVAASQAAIILAGGEKGMRYAMP  194 (240)
Q Consensus       117 ~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~--~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~P  194 (240)
                      .+...+++.|..++.++..+.|.|.+|||||++.....|++.|+.++  .||.+++.|.|+|.|..|+++|++  +++.|
T Consensus        25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~--i~a~~  102 (214)
T cd07022          25 TSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAADR--IVVTP  102 (214)
T ss_pred             ccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCCE--EEEcC
Confidence            45678999999888777778899999999999999999999999988  999999999999999999999996  99999


Q ss_pred             CceE------eeecCCCCC------------CC------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          195 NARI------MLNQPQSGS------------GG------------HVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       195 nA~i------MIHqP~~g~------------~G------------~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      ++++      +.|....+.            .|            +.++-+..-+.++.+.+.+.+.+++..|++
T Consensus       103 ~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~  177 (214)
T cd07022         103 TAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLS  177 (214)
T ss_pred             CCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9985      334332110            12            234555556667778888888888887764

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=98.96  E-value=2e-08  Score=87.45  Aligned_cols=118  Identities=14%  Similarity=-0.000  Sum_probs=90.8

Q ss_pred             HHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHh---hcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCc
Q 026362          120 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS---WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNA  196 (240)
Q Consensus       120 ~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~---~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA  196 (240)
                      ..+...|..+..++..+.|.|.+|||||++.....+++.|+   ..+.||.+++.|.|+|.|..|+++|++  +++.|++
T Consensus        24 ~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~--i~a~~~a  101 (211)
T cd07019          24 DTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPANY--IVANPST  101 (211)
T ss_pred             HHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCE--EEEcCCC
Confidence            57888888888776778999999999999999888888665   456799999999999999999999997  9999998


Q ss_pred             eEeeec---------------------CCC-C---CC-C---CHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          197 RIMLNQ---------------------PQS-G---SG-G---HVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       197 ~iMIHq---------------------P~~-g---~~-G---~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      ++...-                     +.. +   .. .   +.++-+.....++.+.+.+.+..++..|++
T Consensus       102 ~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~  173 (211)
T cd07019         102 LTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKRFITLVADARHST  173 (211)
T ss_pred             EEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            874321                     111 1   00 0   223334445677888888998888888775

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=98.87  E-value=3.5e-08  Score=90.38  Aligned_cols=91  Identities=19%  Similarity=0.172  Sum_probs=77.3

Q ss_pred             ccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcE
Q 026362          111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMR  190 (240)
Q Consensus       111 ~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR  190 (240)
                      ...||.+.++.+...+...   +++++|.|.||+|||.+.++..|.+.|+....+++.++-..|.|+|++|++++++  -
T Consensus        69 ~~~I~i~dse~v~raI~~~---~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe--I  143 (285)
T PF01972_consen   69 YRYIDIDDSEFVLRAIREA---PKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE--I  143 (285)
T ss_pred             ceeEcHhhHHHHHHHHHhc---CCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe--E
Confidence            3457777777777665433   4467899999999999999999999999999999999999999999999999997  7


Q ss_pred             EeccCceEeeecCCCC
Q 026362          191 YAMPNARIMLNQPQSG  206 (240)
Q Consensus       191 ~a~PnA~iMIHqP~~g  206 (240)
                      ++.|+|.+-==.|..+
T Consensus       144 vM~p~a~LGpiDPqi~  159 (285)
T PF01972_consen  144 VMGPGAVLGPIDPQIG  159 (285)
T ss_pred             EECCCCccCCCCcccc
Confidence            8889998876666643

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.68  E-value=7.4e-08  Score=90.24  Aligned_cols=92  Identities=16%  Similarity=0.156  Sum_probs=66.3

Q ss_pred             EEEEccccChhHHHHHHHHHHhh-hccCCCCCceEEEeCCCccHhHHHHH---HHHHhhcCCCeEEEEcceechHHHHHH
Q 026362          107 IIFIGQPINSMVAQRAISQLVTL-ATIDEDADILMYLNCPGGSIYSVLAI---YDCMSWIKPKVGTVCFGVAASQAAIIL  182 (240)
Q Consensus       107 IIfl~g~Id~~~a~~~iaqLl~L-~~~d~~~~I~l~INSPGGsV~aGlaI---yd~L~~~~~~V~Tvv~G~AaS~aslIl  182 (240)
                      +|.+.|.|+...+..+...+..+ ....+.+.|.|.||||||++.+.--+   ...++..+.||++++.++|||.|.+|.
T Consensus        94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA  173 (330)
T PRK11778         94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA  173 (330)
T ss_pred             EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence            45677888875554444444332 22233367999999999999863333   334555567999999999999999999


Q ss_pred             cCCCCCcEEeccCceEee
Q 026362          183 AGGEKGMRYAMPNARIML  200 (240)
Q Consensus       183 ~aG~kgkR~a~PnA~iMI  200 (240)
                      |+|++  .++.|.+.+..
T Consensus       174 saAD~--I~A~P~a~vGS  189 (330)
T PRK11778        174 CVADK--IIAAPFAIVGS  189 (330)
T ss_pred             HhCCE--EEECCCCeEEe
Confidence            99996  88889886654

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.54  E-value=1.3e-06  Score=76.74  Aligned_cols=88  Identities=13%  Similarity=0.141  Sum_probs=76.1

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhc---CCCeEEEEcceechHHHHHHcCCCCCc
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAASQAAIILAGGEKGM  189 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~---~~~V~Tvv~G~AaS~aslIl~aG~kgk  189 (240)
                      ..+......++..|..+..++..+-|.|.+|||||.+.+...|++.|+.+   +.||.+++.| |+|.|.+|.++|++  
T Consensus        25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~--  101 (222)
T cd07018          25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE--  101 (222)
T ss_pred             CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE--
Confidence            34556677899999988877778899999999999999999999999765   4799999997 99999999999996  


Q ss_pred             EEeccCceEeeecC
Q 026362          190 RYAMPNARIMLNQP  203 (240)
Q Consensus       190 R~a~PnA~iMIHqP  203 (240)
                      +++.|++.+.+.-.
T Consensus       102 I~a~p~~~vg~iGv  115 (222)
T cd07018         102 IYLNPSGSVELTGL  115 (222)
T ss_pred             EEECCCceEEeecc
Confidence            99999999998643

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>PRK10949 protease 4; Provisional

Probab=98.47  E-value=4.5e-07  Score=91.12  Aligned_cols=89  Identities=21%  Similarity=0.162  Sum_probs=74.4

Q ss_pred             EEEEccccChh-------HHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhc---CCCeEEEEcceech
Q 026362          107 IIFIGQPINSM-------VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAAS  176 (240)
Q Consensus       107 IIfl~g~Id~~-------~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~---~~~V~Tvv~G~AaS  176 (240)
                      +|.+.|.|.+.       ..+.++.+|.....++..+.|.|.||||||++.+...|++.|+..   +.||.+.+.++|||
T Consensus       330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS  409 (618)
T PRK10949        330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS  409 (618)
T ss_pred             EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence            55677777542       245678888877777788999999999999999999999999755   46999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCce
Q 026362          177 QAAIILAGGEKGMRYAMPNAR  197 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~  197 (240)
                      .|.+|.++|++  -++.|.+.
T Consensus       410 ggY~iA~aad~--I~a~p~t~  428 (618)
T PRK10949        410 GGYWISTPANY--IVASPSTL  428 (618)
T ss_pred             HHHHHHHhcCE--EEECCCCc
Confidence            99999999996  78889653

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=3.2e-06  Score=81.72  Aligned_cols=97  Identities=23%  Similarity=0.236  Sum_probs=82.1

Q ss_pred             EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEc---ceechHHHHHHc
Q 026362          107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCF---GVAASQAAIILA  183 (240)
Q Consensus       107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~---G~AaS~aslIl~  183 (240)
                      ++.+.|+||+.+++.+...|..-+. +..+.+.|.+|+|||-+++...|...+...+.||+.|+.   +.|+|+|++|++
T Consensus        30 vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m  108 (436)
T COG1030          30 VIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILM  108 (436)
T ss_pred             EEEecCccCHHHHHHHHHHHHHHHh-CCCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHH
Confidence            5689999999999988888775554 335789999999999999999999999999999888884   369999999999


Q ss_pred             CCCCCcEEeccCceEeeecCCCC
Q 026362          184 GGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       184 aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +++.  -+|.|.+.+-=-+|-.+
T Consensus       109 ~~hi--aaMAPgT~iGaa~Pi~~  129 (436)
T COG1030         109 ATHI--AAMAPGTNIGAATPIAG  129 (436)
T ss_pred             hcCh--hhhCCCCcccccceecC
Confidence            9996  45668888877777643

>COG3904 Predicted periplasmic protein [Function unknown]

Probab=97.72  E-value=0.00017  Score=64.37  Aligned_cols=94  Identities=20%  Similarity=0.203  Sum_probs=71.9

Q ss_pred             EEEccccChhHHHHHHHHHHhhhccCCCCCce-EEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCCC
Q 026362          108 IFIGQPINSMVAQRAISQLVTLATIDEDADIL-MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE  186 (240)
Q Consensus       108 Ifl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~  186 (240)
                      |...+++-+.-+......|..-   .+..-++ +.+|||||++...+++-..++..+.++..--..+|+|+..++|++|.
T Consensus        79 VvVse~~a~~da~sal~~lir~---~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagGv  155 (245)
T COG3904          79 VVVSEPGANVDAASALGRLIRK---AGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGGV  155 (245)
T ss_pred             EEEcCCCCCccHHHHHHHHHhc---cCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcce
Confidence            3455554443333344444322   2222334 77899999999999999999999988888888899999999999999


Q ss_pred             CCcEEeccCceEeeecCCCC
Q 026362          187 KGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       187 kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .  |++-+.+.+-+||+...
T Consensus       156 r--Rvve~~ayiGVHq~~~~  173 (245)
T COG3904         156 R--RVVEDFAYIGVHQITTT  173 (245)
T ss_pred             e--eeecccceeeeeecccc
Confidence            6  99999999999999954

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=97.29  E-value=0.0044  Score=51.94  Aligned_cols=93  Identities=12%  Similarity=0.125  Sum_probs=68.6

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHh-----------------HHHHHHHHHhhcCCCeEEEEc
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIY-----------------SVLAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~-----------------aGlaIyd~L~~~~~~V~Tvv~  171 (240)
                      .+|.++.+++.+.|..++..+..+-|.|.-+    |.|+++.                 ....++..+..++.||.+.+.
T Consensus        22 ~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~  101 (195)
T cd06558          22 ALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVN  101 (195)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence            3677888899999888876433332222222    4455543                 224566677788899999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      |.|.+.|..+++++|-  |++.++++|.+.....|.
T Consensus       102 G~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~  135 (195)
T cd06558         102 GAALGGGLELALACDI--RIAAEDAKFGLPEVKLGL  135 (195)
T ss_pred             CeeecHHHHHHHhCCE--EEecCCCEEechhhhcCC
Confidence            9999999999999997  999999999998776553

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=96.60  E-value=0.034  Score=55.95  Aligned_cols=83  Identities=11%  Similarity=0.022  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHhhhccCCCCCceEEEeC-CCccHhHHHHHHHHHhhcC---CCeEEEEcceechHHHHHHcCCCCCcEEe
Q 026362          117 MVAQRAISQLVTLATIDEDADILMYLNC-PGGSIYSVLAIYDCMSWIK---PKVGTVCFGVAASQAAIILAGGEKGMRYA  192 (240)
Q Consensus       117 ~~a~~~iaqLl~L~~~d~~~~I~l~INS-PGGsV~aGlaIyd~L~~~~---~~V~Tvv~G~AaS~aslIl~aG~kgkR~a  192 (240)
                      .....++.+|.....++..+-|.|.+|+ |||.+.....|++.|+..+   .||.++..+. +|.+.+|.+++++  .++
T Consensus        76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~AD~--I~~  152 (584)
T TIGR00705        76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFADE--IIL  152 (584)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhCCE--EEE
Confidence            4566899999988888888999999996 6778888888999998664   7899988765 6889999999996  888


Q ss_pred             ccCceEeeec
Q 026362          193 MPNARIMLNQ  202 (240)
Q Consensus       193 ~PnA~iMIHq  202 (240)
                      .|.+.+.++-
T Consensus       153 ~p~G~v~~~G  162 (584)
T TIGR00705       153 NPMGSVDLHG  162 (584)
T ss_pred             CCCceEEeec
Confidence            8998887643

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=96.49  E-value=0.02  Score=53.83  Aligned_cols=99  Identities=15%  Similarity=0.141  Sum_probs=71.9

Q ss_pred             cCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHh-------HHHHHHHHHh---hcCCCeEEEEcce
Q 026362          104 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCMS---WIKPKVGTVCFGV  173 (240)
Q Consensus       104 ~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~-------aGlaIyd~L~---~~~~~V~Tvv~G~  173 (240)
                      ++++-..+|-++++-+..... +..+.... .-||.-++|+||..+.       .+-+|...+.   ..+.|+.+++.|-
T Consensus       122 ~e~~~~~~G~~~p~g~rKa~R-~m~lA~~f-~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe  199 (316)
T TIGR00513       122 KEKLRRNFGMPAPEGYRKALR-LMKMAERF-KMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE  199 (316)
T ss_pred             cccccccCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence            455555567777765544433 44444333 4689999999998732       2345655554   5568999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |+|.|++.++.++.  +++.|++.+.+=.|.+.
T Consensus       200 ggsGGAla~~~aD~--v~m~~~a~~sVisPEg~  230 (316)
T TIGR00513       200 GGSGGALAIGVGDK--VNMLEYSTYSVISPEGC  230 (316)
T ss_pred             cccHHHhhhccCCE--EEEecCceEEecCHHHH
Confidence            99999998888886  89999999999988864

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=96.46  E-value=0.025  Score=53.28  Aligned_cols=99  Identities=15%  Similarity=0.162  Sum_probs=71.6

Q ss_pred             cCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHh-------HHHHHHHHHh---hcCCCeEEEEcce
Q 026362          104 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCMS---WIKPKVGTVCFGV  173 (240)
Q Consensus       104 ~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~-------aGlaIyd~L~---~~~~~V~Tvv~G~  173 (240)
                      ++++-..+|-++.+.+..... +..+.... .-||.-++++||..+.       .+-+|...+.   ..+.|+.+++.|-
T Consensus       122 ~e~~~~~~G~~~peg~rKa~R-~m~lA~~f-~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGe  199 (319)
T PRK05724        122 KEKIRRNFGMPRPEGYRKALR-LMKMAEKF-GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGE  199 (319)
T ss_pred             cccccccCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            555556677777775544433 33343333 4689999999997643       1234544444   6668999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.|.|++.++.++.  .++.|+|.+.+=.|.+.
T Consensus       200 g~sGGAla~~~aD~--v~m~~~A~~svisPEg~  230 (319)
T PRK05724        200 GGSGGALAIGVGDR--VLMLEYSTYSVISPEGC  230 (319)
T ss_pred             ccHHHHHHHhccCe--eeeecCceEeecCHHHH
Confidence            99999999988886  88999999999888754

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=96.44  E-value=0.019  Score=54.12  Aligned_cols=99  Identities=15%  Similarity=0.093  Sum_probs=70.3

Q ss_pred             cCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHh-------HHHHHHHHH---hhcCCCeEEEEcce
Q 026362          104 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCM---SWIKPKVGTVCFGV  173 (240)
Q Consensus       104 ~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~-------aGlaIyd~L---~~~~~~V~Tvv~G~  173 (240)
                      ++|+-..+|-++++-...... +..+.... .-||.-++++||..+.       .+-+|...+   ...+.|+.+++.|-
T Consensus       125 ~e~~~~~~G~~~p~g~rKa~R-lm~lA~~f-~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGe  202 (322)
T CHL00198        125 KENVLRNFGMPSPGGYRKALR-LMKHANKF-GLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGE  202 (322)
T ss_pred             hhhhhhcCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCc
Confidence            344434455566665544433 33343333 4689999999997743       234565554   46678999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |+|.|++.++.++.  .+++++|.+.+=.|.+.
T Consensus       203 ggsGGAlal~~aD~--V~m~e~a~~sVisPEg~  233 (322)
T CHL00198        203 GGSGGALGIGIGDS--IMMLEYAVYTVATPEAC  233 (322)
T ss_pred             ccHHHHHhhhcCCe--EEEeCCeEEEecCHHHH
Confidence            99999998888886  89999999999999754

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=96.38  E-value=0.072  Score=47.34  Aligned_cols=89  Identities=19%  Similarity=0.182  Sum_probs=65.8

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe------CCCccHhH--------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN------CPGGSIYS--------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN------SPGGsV~a--------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++...+.+.+..++.++..+  .|.|.      |.|+|+..              ...+++.|..++.||.+.+.|.
T Consensus        29 l~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~  106 (259)
T PRK06688         29 LTAAMYQALADALEAAATDPAVR--VVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGP  106 (259)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCe
Confidence            78888888888888877533222  22333      33444422              2346667788899999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.+.|.-++++||-  |++.++++|-+.....|
T Consensus       107 a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G  137 (259)
T PRK06688        107 AVGVGVSLALACDL--VYASESAKFSLPFAKLG  137 (259)
T ss_pred             eecHHHHHHHhCCE--EEecCCCEecCchhhcC
Confidence            99999999999997  99999999888665544

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=96.23  E-value=0.019  Score=59.12  Aligned_cols=94  Identities=16%  Similarity=0.157  Sum_probs=67.3

Q ss_pred             EEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHh-------HHHHHHHHHh---hcCCCeEEEEcceechHH
Q 026362          109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCMS---WIKPKVGTVCFGVAASQA  178 (240)
Q Consensus       109 fl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~-------aGlaIyd~L~---~~~~~V~Tvv~G~AaS~a  178 (240)
                      ..+|-.+++-+... ..+..+.... .-||.-+|++||..+.       .+-+|...+.   ....|+.+++.|-|+|.|
T Consensus       218 rnfG~~~peGyRKA-lRlmkLAekf-gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGG  295 (762)
T PLN03229        218 RNFGMPTPHGYRKA-LRMMYYADHH-GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGG  295 (762)
T ss_pred             ccCCCCCHHHHHHH-HHHHHHHHHc-CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHH
Confidence            34444555543333 2333343333 4689999999998762       3456666555   556899999999999999


Q ss_pred             HHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          179 AIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       179 slIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      ++.++.++.  .++.|+|.+.+=.|.+.
T Consensus       296 AlA~g~aD~--VlMle~A~~sVisPEga  321 (762)
T PLN03229        296 ALAIGCANK--LLMLENAVFYVASPEAC  321 (762)
T ss_pred             HHHhhcCCE--EEEecCCeEEecCHHHH
Confidence            999999986  88899999888888754

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=96.22  E-value=0.062  Score=47.92  Aligned_cols=88  Identities=17%  Similarity=0.189  Sum_probs=64.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHH------------------HHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSV------------------LAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aG------------------laIyd~L~~~~~~V~T  168 (240)
                      +|.++..++.+.|..++..+   ++. |.|.      |.|+|+...                  ..++..|...+.||.+
T Consensus        27 l~~~~~~~l~~~l~~~~~d~---~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIA  103 (260)
T PRK07511         27 LHPDMYAAGIEALNTAERDP---SIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIA  103 (260)
T ss_pred             CCHHHHHHHHHHHHHhccCC---CeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            77788888888877776432   333 3333      344554321                  2355667788899999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.|.+.|..|++++|-  |++.++++|-+..-.-|
T Consensus       104 av~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G  139 (260)
T PRK07511        104 AVEGAAAGAGFSLALACDL--LVAARDAKFVMAYVKVG  139 (260)
T ss_pred             EECCeeehHHHHHHHhCCE--EEeeCCCEEeccccccC
Confidence            9999999999999999997  99999999888665544

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=96.20  E-value=0.059  Score=48.66  Aligned_cols=110  Identities=14%  Similarity=0.165  Sum_probs=72.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccH----------hHHHHHHHHHhhc---CCCeEEEEcceechHHHH
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCPGGSI----------YSVLAIYDCMSWI---KPKVGTVCFGVAASQAAI  180 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV----------~aGlaIyd~L~~~---~~~V~Tvv~G~AaS~asl  180 (240)
                      ++-+-+......+...-..+..-||...+++||-.+          .++-.+.+++...   +.|+.+++.|.+.|.|.+
T Consensus        45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l  124 (238)
T TIGR03134        45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL  124 (238)
T ss_pred             CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence            554445555554444311234679999999999653          3344344555544   499999999999998888


Q ss_pred             HHcC-CCCCcEEeccCceEeeecCCCC---CCCCHHHHHHHHHHHHHHH
Q 026362          181 ILAG-GEKGMRYAMPNARIMLNQPQSG---SGGHVEDVKRQVNEAVISR  225 (240)
Q Consensus       181 Il~a-G~kgkR~a~PnA~iMIHqP~~g---~~G~a~di~~~a~eL~~~r  225 (240)
                      -+.. ++  ..+++|++.+-+=.|.+.   .+-+.+++++.++++..+.
T Consensus       125 amg~~ad--~v~Alp~A~i~vm~~e~aa~I~~~~~~~~~e~a~~~~~~a  171 (238)
T TIGR03134       125 AHGLQAD--RIIALPGAMVHVMDLESMARVTKRSVEELEALAKSSPVFA  171 (238)
T ss_pred             HHccCcC--eEEEcCCcEEEecCHHHHHHHHccCHhHHHHHHHhhhhhc
Confidence            7753 44  489999999888777754   3556666666666554433

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=96.18  E-value=0.051  Score=49.14  Aligned_cols=89  Identities=18%  Similarity=0.241  Sum_probs=65.6

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHH-------------------HHHHHHHhhcCCCeE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSV-------------------LAIYDCMSWIKPKVG  167 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aG-------------------laIyd~L~~~~~~V~  167 (240)
                      ++.++..++.+.|..++.+   .++. |.|.      |-|+|+...                   ..+++.|..++.||.
T Consensus        41 l~~~~~~eL~~~l~~~~~d---~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  117 (277)
T PRK08258         41 LTFESYAELRDLFRELVYA---DDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPII  117 (277)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            6777788888887777642   2333 3333      334554321                   135667778899999


Q ss_pred             EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      +.+.|.|.+.|.-|.++||-  |++.++++|.+.....|.
T Consensus       118 AaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl  155 (277)
T PRK08258        118 AAVDGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGL  155 (277)
T ss_pred             EEECCeeehHHHHHHHhCCE--EEecCCCEEeccccccCc
Confidence            99999999999999999997  999999999887766554

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=96.14  E-value=0.054  Score=48.18  Aligned_cols=88  Identities=16%  Similarity=0.211  Sum_probs=64.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-e------CCCccHhH------------HHHHHHHHhhcCCCeEEEEccee
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-N------CPGGSIYS------------VLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N------SPGGsV~a------------GlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      +|.++.+++.+.+..++.++   ++.+.| -      |.|+|+..            ...++..|..++.||.+.+.|.|
T Consensus        24 l~~~~~~~l~~a~~~~~~d~---~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  100 (248)
T PRK06072         24 LNLEMRNEFISKLKQINADP---KIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVT  100 (248)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence            77888888888888776532   343332 2      44566532            11245567778899999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      ...|.-+.++||-  |++.++++|-+.....|
T Consensus       101 ~GgG~~lal~cD~--~ia~~~a~f~~~~~~~G  130 (248)
T PRK06072        101 AGACIGIALSTDF--KFASRDVKFVTAFQRLG  130 (248)
T ss_pred             ehHHHHHHHhCCE--EEEcCCCEEecchhhcC
Confidence            9999999999997  99999999987665544

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=95.98  E-value=0.065  Score=48.88  Aligned_cols=99  Identities=15%  Similarity=0.113  Sum_probs=71.8

Q ss_pred             cCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhH-------HHHHHHHHh---hcCCCeEEEEcce
Q 026362          104 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYS-------VLAIYDCMS---WIKPKVGTVCFGV  173 (240)
Q Consensus       104 ~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~a-------GlaIyd~L~---~~~~~V~Tvv~G~  173 (240)
                      ++++...+|-++.+-+.... .+..+..+. .-||.-++||||..+..       +-.|..++.   ..+.|+.+++.|-
T Consensus        69 ~d~~~~~~G~~~~~g~rKa~-R~~~lA~~~-~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~  146 (256)
T PRK12319         69 QDNLKRNFGQPHPEGYRKAL-RLMKQAEKF-GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE  146 (256)
T ss_pred             ccceeeeCCCCCHHHHHHHH-HHHHHHHHc-CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            44555566778777554443 344444333 46899999999987521       234655544   4468999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.|.|++.++.++.  .++.|++.+.+=.|.+.
T Consensus       147 ~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~  177 (256)
T PRK12319        147 GGSGGALALAVADQ--VWMLENTMYAVLSPEGF  177 (256)
T ss_pred             cCcHHHHHhhcCCE--EEEecCceEEEcCHHHH
Confidence            99999999999986  89999999999888753

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=95.97  E-value=0.055  Score=48.59  Aligned_cols=88  Identities=11%  Similarity=0.128  Sum_probs=63.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhHH-------------------------HHHHHHHhh
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYSV-------------------------LAIYDCMSW  161 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~aG-------------------------laIyd~L~~  161 (240)
                      +|.++...+.+.|..++..+   ++. |.|-+.      |+++..-                         ...++.|..
T Consensus        30 l~~~~~~~L~~~l~~~~~d~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  106 (272)
T PRK06210         30 WTPVMEAEVYAAMDRAEADP---AVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTA  106 (272)
T ss_pred             CCHHHHHHHHHHHHHhccCC---CeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHh
Confidence            77777888888887776422   232 223333      3444321                         123466778


Q ss_pred             cCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       162 ~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      ++.||.+.+.|.|.+.|.-|+++||-  |++.++++|-+..+.-|
T Consensus       107 ~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G  149 (272)
T PRK06210        107 LRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRG  149 (272)
T ss_pred             CCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcC
Confidence            89999999999999999999999997  99999999987666544

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=95.97  E-value=0.11  Score=46.32  Aligned_cols=91  Identities=15%  Similarity=0.133  Sum_probs=65.9

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhHH-----------------HHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYSV-----------------LAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~aG-----------------laIyd~L~~~~~~V~Tv  169 (240)
                      +|.++...+.+.|..++.++   +|. |.|.+.      |+|+...                 ..+++.|...+.||.+.
T Consensus        27 l~~~~~~~l~~al~~~~~d~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  103 (257)
T PRK06495         27 LSRELRDELIAVFDEISERP---DVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAA  103 (257)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            77888888888888776533   232 223333      4444321                 12456677888999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG  209 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G  209 (240)
                      +.|.|.+.|.-|.++||-  |++.++++|-+-...-|..|
T Consensus       104 v~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~  141 (257)
T PRK06495        104 VNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAG  141 (257)
T ss_pred             ECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCccc
Confidence            999999999999999997  99999999988666655444

>PRK05869 enoyl-CoA hydratase; Validated

Probab=95.93  E-value=0.14  Score=45.05  Aligned_cols=89  Identities=15%  Similarity=0.126  Sum_probs=64.9

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHhHH---------------HHHHHHHhhcCCCeEEEEcc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIYSV---------------LAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~aG---------------laIyd~L~~~~~~V~Tvv~G  172 (240)
                      ++.++...+.+.|..++.++..+  -|.|.+.      |+++...               ..+++.|..++.||.+.+.|
T Consensus        31 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G  108 (222)
T PRK05869         31 LTRQVYREIVAAANELGRRDDVA--AVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITG  108 (222)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            77788888888888877533222  2333433      4443321               23566778889999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|...|..+.++||-  |++.++++|-+....-|
T Consensus       109 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  140 (222)
T PRK05869        109 YALGAGLTLALAADW--RVSGDNVKFGATEILAG  140 (222)
T ss_pred             EeecHHHHHHHhCCE--EEecCCCEEcCchhccC
Confidence            999999999999997  99999998877655544

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=95.91  E-value=0.07  Score=46.88  Aligned_cols=89  Identities=10%  Similarity=0.070  Sum_probs=67.9

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHh---------------HHHHHHHHHhhcCCCeEEEEcc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIY---------------SVLAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~---------------aGlaIyd~L~~~~~~V~Tvv~G  172 (240)
                      +|.++..++...|..++.++..+  .|.|.+.      |+++.               ....++..|..++.||.+.+.|
T Consensus        22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G   99 (245)
T PF00378_consen   22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG   99 (245)
T ss_dssp             BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence            78888899999998888644323  4444443      44442               3445788888999999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.+.|..+++++|-  |++.+++.|-+....-|
T Consensus       100 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G  131 (245)
T PF00378_consen  100 HAVGGGFELALACDF--RIAAEDAKFGFPEVRLG  131 (245)
T ss_dssp             EEETHHHHHHHHSSE--EEEETTTEEETGGGGGT
T ss_pred             cccccccccccccce--EEeecccceeeeecccC
Confidence            999999999999996  99999999776555544

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK10949 protease 4; Provisional

Probab=95.87  E-value=0.12  Score=52.53  Aligned_cols=85  Identities=12%  Similarity=-0.003  Sum_probs=66.8

Q ss_pred             hhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHH-HHHHHHHhhcC---CCeEEEEcceechHHHHHHcCCCCCcEE
Q 026362          116 SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV-LAIYDCMSWIK---PKVGTVCFGVAASQAAIILAGGEKGMRY  191 (240)
Q Consensus       116 ~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aG-laIyd~L~~~~---~~V~Tvv~G~AaS~aslIl~aG~kgkR~  191 (240)
                      +....+++..|.....++..+-|.|.+|+|||...+. ..|++.|+..+   .||.++ ...+++.+.+|++++|+  .+
T Consensus        94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~  170 (618)
T PRK10949         94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IY  170 (618)
T ss_pred             cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EE
Confidence            3445678999888888788899999999998876655 67999887665   588886 44456788888888996  88


Q ss_pred             eccCceEeeecC
Q 026362          192 AMPNARIMLNQP  203 (240)
Q Consensus       192 a~PnA~iMIHqP  203 (240)
                      +.|.+.+.++-.
T Consensus       171 l~P~G~v~~~G~  182 (618)
T PRK10949        171 LSPQGVVDLHGF  182 (618)
T ss_pred             ECCCceEEEeee
Confidence            889998887543

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=95.82  E-value=0.078  Score=47.17  Aligned_cols=88  Identities=11%  Similarity=0.056  Sum_probs=64.9

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-e------CCCccHhH--------------HHHHHHHHhhcCCCeEEEEcc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-N------CPGGSIYS--------------VLAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N------SPGGsV~a--------------GlaIyd~L~~~~~~V~Tvv~G  172 (240)
                      +|.++.+++...|..++.+   +++.+.| .      |.|+++.+              ...++..|..++.||.+.+.|
T Consensus        30 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  106 (251)
T PRK06023         30 ITRAMYATMAKALKAADAD---DAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDG  106 (251)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            7788888888888777653   2344333 2      33455431              123566788889999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|...|.-|.++||-  |++.++++|.+.....|
T Consensus       107 ~a~GgG~~la~acD~--ria~~~a~f~~pe~~~G  138 (251)
T PRK06023        107 LAIGIGTTIHLHCDL--TFASPRSLFRTPFVDLA  138 (251)
T ss_pred             ceecHHHHHHHhCCE--EEEeCCCEecCcccccC
Confidence            999999999999997  99999999987665444

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=95.80  E-value=0.083  Score=47.12  Aligned_cols=88  Identities=16%  Similarity=0.131  Sum_probs=64.6

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhH-------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~a-------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++..++.+.+..++.++   ++. |.|.      |.|+|+..             ...+++.|..++.||.+.+.|.
T Consensus        26 l~~~~~~~L~~~~~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  102 (255)
T PRK09674         26 LNNALLTQLVNELEAAATDT---SIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGY  102 (255)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            67788888888887776432   333 2223      34555432             1235667788899999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.+.|.-|+++||-  |++.++++|.+.....|
T Consensus       103 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  133 (255)
T PRK09674        103 ALGAGCELALLCDI--VIAGENARFGLPEITLG  133 (255)
T ss_pred             eehHHHHHHHhCCE--EEecCCCEEeCchhhcC
Confidence            99999999999997  99999999887665544

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=95.80  E-value=0.083  Score=47.29  Aligned_cols=86  Identities=10%  Similarity=0.031  Sum_probs=61.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-Ee-------CCCccHhH--------------HHHHHHHHhhcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-LN-------CPGGSIYS--------------VLAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN-------SPGGsV~a--------------GlaIyd~L~~~~~~V~Tvv~  171 (240)
                      +|.++...+.+.|..++.+   .+|.+. +.       |.|+|+..              ...++..|..++.||.+.+.
T Consensus        26 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  102 (261)
T PRK03580         26 IDAKTSFAMGEVFLNFRDD---PELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN  102 (261)
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEEC
Confidence            6777788888887777643   234332 23       33444432              12345667788899999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      |.|.+.|.-++++||-  |++.++++|-+-...
T Consensus       103 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~  133 (261)
T PRK03580        103 GYAFGGGFELALAADF--IVCADNASFALPEAK  133 (261)
T ss_pred             CeeehHHHHHHHHCCE--EEecCCCEEeCcccc
Confidence            9999999999999997  999999988764433

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=95.79  E-value=0.077  Score=47.47  Aligned_cols=89  Identities=12%  Similarity=0.110  Sum_probs=64.2

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhH--------------H-------HHHHHHHhhcCCC
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYS--------------V-------LAIYDCMSWIKPK  165 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~a--------------G-------laIyd~L~~~~~~  165 (240)
                      +|.++...+.+.|..++.+++  ++. |.|.      |.|+++.+              +       ..++..|...+.|
T Consensus        28 l~~~~~~~l~~~l~~~~~d~~--~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  105 (266)
T PRK05981         28 VSIDMLGGLAEALDAIEDGKA--EVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCP  105 (266)
T ss_pred             CCHHHHHHHHHHHHHHhcCCC--ceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence            677888888888877764322  233 2223      33444432              1       1255677788999


Q ss_pred             eEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          166 VGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       166 V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.+.+.|.|...|.-+.+++|-  |++.++++|-+..+.-|
T Consensus       106 vIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG  144 (266)
T PRK05981        106 IVTAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIG  144 (266)
T ss_pred             EEEEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcC
Confidence            9999999999999999999997  99999999987666644

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=95.77  E-value=0.085  Score=47.03  Aligned_cols=88  Identities=19%  Similarity=0.237  Sum_probs=63.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHH----------------------HHHHHHHhhcCC
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSV----------------------LAIYDCMSWIKP  164 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aG----------------------laIyd~L~~~~~  164 (240)
                      +|.++.+++...|..++.++   ++. |.|.      |.|+|+...                      ..++..|+.++.
T Consensus        27 l~~~~~~~l~~al~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  103 (262)
T PRK07509         27 LDFAMFEELIATIKRLKKDR---GIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPV  103 (262)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCC
Confidence            77888888888888777533   333 3333      345554321                      113345677889


Q ss_pred             CeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          165 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       165 ~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      ||.+.+.|.|...|.-|.++||-  |++.++++|-+.....|
T Consensus       104 pvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  143 (262)
T PRK07509        104 PVIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWG  143 (262)
T ss_pred             CEEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhccC
Confidence            99999999999999999999997  99999999888664433

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=95.77  E-value=0.095  Score=46.92  Aligned_cols=88  Identities=18%  Similarity=0.143  Sum_probs=63.8

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeC-------CCccHhH---------------HHHHHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNC-------PGGSIYS---------------VLAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INS-------PGGsV~a---------------GlaIyd~L~~~~~~V~Tvv  170 (240)
                      +|.++...+.+.|..++.++   ++. |.|-+       .|+|+..               ...+++.|...+.||.+.+
T Consensus        31 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  107 (256)
T PRK06143         31 LGTPVILALTQALRWLAADP---DVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARI  107 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            78888888988888877533   333 33333       2344322               1235667778899999999


Q ss_pred             cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.|.+.|.-|.++||-  |++.++++|.+-....|
T Consensus       108 ~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  141 (256)
T PRK06143        108 PGWCLGGGLELAAACDL--RIAAHDAQFGMPEVRVG  141 (256)
T ss_pred             CCEEeehhHHHHHhCCE--EEecCCCEEeCCccccC
Confidence            99999999999999997  99999998887444433

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=95.76  E-value=0.052  Score=52.92  Aligned_cols=91  Identities=18%  Similarity=0.167  Sum_probs=64.9

Q ss_pred             cccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHh-------HHHHHHHHH---hhcCCCeEEEEcceechHHHHH
Q 026362          112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCM---SWIKPKVGTVCFGVAASQAAII  181 (240)
Q Consensus       112 g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~-------aGlaIyd~L---~~~~~~V~Tvv~G~AaS~aslI  181 (240)
                      |-++++-+..... +..+.... .-||.-+||+||....       .+-+|...+   -..+.|+.+++.|-++|.|++.
T Consensus       200 G~~~peGyRKAlR-~mklAekf-~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAla  277 (431)
T PLN03230        200 AMPQPNGYRKALR-FMRHAEKF-GFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALA  277 (431)
T ss_pred             CCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHH
Confidence            3455554443333 33343333 4689999999997653       234566555   3556899999999999999999


Q ss_pred             HcCCCCCcEEeccCceEeeecCCCC
Q 026362          182 LAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       182 l~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      ++.|+.  .+++|||.+.+=.|.+.
T Consensus       278 lg~aD~--VlMle~A~ysVisPEga  300 (431)
T PLN03230        278 IGCGNR--MLMMENAVYYVASPEAC  300 (431)
T ss_pred             hhcCCE--EEEecCCEEEecCHHHH
Confidence            998985  88999999999888743

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=95.75  E-value=0.094  Score=46.88  Aligned_cols=88  Identities=16%  Similarity=0.152  Sum_probs=63.6

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-Ee-------CCCccHhHH--------------HHHHHHHhhcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-LN-------CPGGSIYSV--------------LAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN-------SPGGsV~aG--------------laIyd~L~~~~~~V~Tvv~  171 (240)
                      +|.++...+...|..++.++   +|.+. |-       |.|+|+..-              ..+++.|..++.||.+.+.
T Consensus        26 l~~~~~~~l~~al~~~~~d~---~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  102 (256)
T TIGR03210        26 FRGQTCDELIHALKDAGYDR---QIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQ  102 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            67778888888877776533   34322 22       334554321              1256677888999999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.|.+.|.-|+++||-  |++.++++|-+-.+.-|
T Consensus       103 G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G  135 (256)
T TIGR03210       103 GYAIGGGNVLVTICDL--TIASEKAQFGQVGPKVG  135 (256)
T ss_pred             CEEehhhHHHHHhCCE--EEEeCCCEEeccccccc
Confidence            9999999999999997  99999999887554433

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=95.71  E-value=0.095  Score=46.94  Aligned_cols=88  Identities=14%  Similarity=0.127  Sum_probs=62.4

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhHH------------------HHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYSV------------------LAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~aG------------------laIyd~L~~~~~~V~T  168 (240)
                      +|.++...+.+.|..++.++   ++. |.|.+.      |+|+..-                  ..+++.|+.++.||.+
T Consensus        29 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  105 (262)
T PRK07468         29 LSARMIAELTTAARRLAADA---AVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIG  105 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            67777778887777665422   333 333333      4554310                  1256778889999999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.|.+.|.-|+++||-  |++.++++|-+-...-|
T Consensus       106 av~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~G  141 (262)
T PRK07468        106 RIQGQAFGGGVGLISVCDV--AIAVSGARFGLTETRLG  141 (262)
T ss_pred             EECCEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccC
Confidence            9999999999999999997  99999998777554433

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=95.70  E-value=0.098  Score=46.76  Aligned_cols=88  Identities=14%  Similarity=0.107  Sum_probs=63.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhH------------HHHHHHHHhhcCCCeEEEEccee
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYS------------VLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~a------------GlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      +|.++...+.+.|..++..+   ++. |.|-      |.|+|+.+            ...++..|..++.||.+.+.|.|
T Consensus        24 l~~~~~~~l~~~l~~~~~~~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  100 (251)
T TIGR03189        24 VDAAMIAALSAALGEHLEDS---ALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQC  100 (251)
T ss_pred             CCHHHHHHHHHHHHHHHcCC---CceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCee
Confidence            78888888888888776533   333 3333      33455432            01245567788899999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.-|.++||-  |++.++++|-+-...-|
T Consensus       101 ~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G  130 (251)
T TIGR03189       101 LGGGLEVAAAGNL--MFAAPDAKLGQPEIVLG  130 (251)
T ss_pred             eeHHHHHHHhCCE--EEEcCCCEEeCchhhcC
Confidence            9999999999997  99999988877444433

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=95.67  E-value=0.12  Score=46.48  Aligned_cols=86  Identities=14%  Similarity=0.133  Sum_probs=63.8

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceE-EEe------CCCccHhH-------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILM-YLN------CPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~IN------SPGGsV~a-------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++..++...|..++.++   ++.+ .|.      |.|+|+..             ...+++.|..++.||.+.+.|.
T Consensus        28 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~  104 (258)
T PRK06190         28 LSAALRRALFAALAEADADD---DVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGA  104 (258)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            78888888888888776532   3332 222      44566542             1246677888899999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      |.+.|.-|++++|-  |++.++++|-+-...
T Consensus       105 a~GgG~~lalacD~--~ia~~~a~f~~pe~~  133 (258)
T PRK06190        105 AVTGGLELALACDI--LIASERARFADTHAR  133 (258)
T ss_pred             eecHHHHHHHhCCE--EEEeCCCEEECcccc
Confidence            99999999999997  999999988764443

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=95.67  E-value=0.24  Score=44.50  Aligned_cols=88  Identities=14%  Similarity=0.149  Sum_probs=62.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeC--------CCccHhHH--------------HHHHHHHhhcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNC--------PGGSIYSV--------------LAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INS--------PGGsV~aG--------------laIyd~L~~~~~~V~Tvv~  171 (240)
                      +|.++...+.+.+..++. |+.+  .|.|.+        .|+|+...              ..+++.|...+.||.+.+.
T Consensus        28 l~~~~~~~l~~al~~~~~-d~v~--~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~  104 (261)
T PRK11423         28 LSKVLIDDLMQALSDLNR-PEIR--VVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVE  104 (261)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCce--EEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            677888888888877764 2222  233443        34444321              2356677888899999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.|...|.-|+++||-  |++.++++|.+-....|
T Consensus       105 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  137 (261)
T PRK11423        105 GSVWGGAFELIMSCDL--IIAASTSTFAMTPANLG  137 (261)
T ss_pred             cEEechHHHHHHhCCE--EEecCCCEecCchhhcC
Confidence            9999999999999997  99999998877554433

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=95.66  E-value=0.11  Score=47.01  Aligned_cols=83  Identities=13%  Similarity=0.060  Sum_probs=59.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-Ee------CCCccHhHH----------------------HHHHHHHhhcCC
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-LN------CPGGSIYSV----------------------LAIYDCMSWIKP  164 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN------SPGGsV~aG----------------------laIyd~L~~~~~  164 (240)
                      +|.++..++.+.|..++.++   ++.+. |.      |.|+|+...                      ..+++.|..++.
T Consensus        34 l~~~~~~~L~~~l~~~~~d~---~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  110 (276)
T PRK05864         34 MAFDVMVPLKEALAEVSYDN---SVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQ  110 (276)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence            67777788888877776432   34332 23      334554321                      124556778889


Q ss_pred             CeEEEEcceechHHHHHHcCCCCCcEEeccCceEeee
Q 026362          165 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN  201 (240)
Q Consensus       165 ~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIH  201 (240)
                      ||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-
T Consensus       111 PvIaav~G~a~GgG~~LalacD~--ria~~~a~f~~p  145 (276)
T PRK05864        111 PVIAAVNGPAIGGGLCLALAADI--RVASSSAYFRAA  145 (276)
T ss_pred             CEEEEECCEeehhHHHHHHhCCE--EEeeCCCEecCc
Confidence            99999999999999999999997  999999888653

>PLN02600 enoyl-CoA hydratase

Probab=95.61  E-value=0.12  Score=46.15  Aligned_cols=88  Identities=11%  Similarity=0.069  Sum_probs=62.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-EeC-------CCccHhH---------------HHHHHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-LNC-------PGGSIYS---------------VLAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-INS-------PGGsV~a---------------GlaIyd~L~~~~~~V~Tvv  170 (240)
                      ++.++.+++.+.+..++.++   ++.+. |-+       .|+|+..               ...+++.|..++.||.+.+
T Consensus        19 l~~~~~~~l~~~~~~~~~d~---~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav   95 (251)
T PLN02600         19 IGKEMLRGLRSAFEKIQADA---SARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVV   95 (251)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence            67888888888887776533   33322 223       2455432               1124556677889999999


Q ss_pred             cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.|.+.|.-|.+++|-  |++.++++|.+-....|
T Consensus        96 ~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G  129 (251)
T PLN02600         96 EGAALGGGLELALSCDL--RICGEEAVFGLPETGLA  129 (251)
T ss_pred             cCeecchhHHHHHhCCE--EEeeCCCEEeCcccccC
Confidence            99999999999999997  99999999887444433

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=95.54  E-value=0.12  Score=46.10  Aligned_cols=88  Identities=16%  Similarity=0.137  Sum_probs=63.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCCC-------ccHhH---------------HHHHHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCPG-------GSIYS---------------VLAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSPG-------GsV~a---------------GlaIyd~L~~~~~~V~Tvv  170 (240)
                      +|.++..++.+.+..++.++   ++. |.|-+.|       +|+..               ...+++.|..++.||.+.+
T Consensus        28 l~~~~~~~l~~~~~~~~~d~---~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav  104 (260)
T PRK05809         28 LNSETLKELDTVLDDIENDD---NVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAI  104 (260)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            67778888888877776432   333 3334434       44321               1235667888899999999


Q ss_pred             cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.|.+.|.-|+++||-  |++.++++|.+....-|
T Consensus       105 ~G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~G  138 (260)
T PRK05809        105 NGFALGGGCELSMACDI--RIASEKAKFGQPEVGLG  138 (260)
T ss_pred             cCeeecHHHHHHHhCCE--EEeeCCCEEeCcccccC
Confidence            99999999999999997  99999999887555433

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=95.52  E-value=0.1  Score=47.64  Aligned_cols=50  Identities=18%  Similarity=0.007  Sum_probs=43.1

Q ss_pred             HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       155 Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +++.|...+.||.+.+.|.|.+.|.-|+++||-  |++.++++|-+.....|
T Consensus       105 ~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~G  154 (296)
T PRK08260        105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRG  154 (296)
T ss_pred             HHHHHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcC
Confidence            456677888999999999999999999999997  99999999988665433

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=95.49  E-value=0.11  Score=46.04  Aligned_cols=85  Identities=12%  Similarity=0.192  Sum_probs=62.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhH----------HHHHHHHHhhcCCCeEEEEcceech
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYS----------VLAIYDCMSWIKPKVGTVCFGVAAS  176 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~a----------GlaIyd~L~~~~~~V~Tvv~G~AaS  176 (240)
                      +|.++..++.+.+..++. +   ++. |.|-      |.|+|+..          ...+++.|..++.||.+.+.|.|.+
T Consensus        24 l~~~~~~~l~~al~~~~~-~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~G   99 (243)
T PRK07854         24 LNAELCEELREAVRKAVD-E---SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIG   99 (243)
T ss_pred             CCHHHHHHHHHHHHHHhc-C---CceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Confidence            788888888888877662 2   233 3333      33455431          1235667778899999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          177 QAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      .|.-+.++||-  |++.++++|-+-...
T Consensus       100 gG~~lal~cD~--~ia~~~a~f~~pe~~  125 (243)
T PRK07854        100 AGLQLAMACDL--RVVAPEAYFQFPVAK  125 (243)
T ss_pred             cHHHHHHhCCE--EEEcCCCEEeccccc
Confidence            99999999997  999999988764433

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=95.48  E-value=0.14  Score=45.76  Aligned_cols=86  Identities=16%  Similarity=0.112  Sum_probs=61.6

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-Ee------CCCccHhH-------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-LN------CPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN------SPGGsV~a-------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++..++.+.|..++.++   ++.+. |-      |.|+|+..             ...+++.|..++.||.+.+.|.
T Consensus        32 l~~~~~~~l~~al~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~  108 (261)
T PRK08138         32 LNMEVRQQLAEHFTELSEDP---DIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGY  108 (261)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence            77788888888887776432   33322 22      33455432             1235666778889999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      |.+.|.-|.++||-  |++.++++|.+-...
T Consensus       109 a~GgG~~lalacD~--ria~~~a~f~~pe~~  137 (261)
T PRK08138        109 ALGGGCELAMHADI--IVAGESASFGQPEIK  137 (261)
T ss_pred             EEcHHHHHHHhCCE--EEecCCCEeeCcccc
Confidence            99999999999996  888888888764443

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=95.46  E-value=0.11  Score=46.92  Aligned_cols=88  Identities=13%  Similarity=0.161  Sum_probs=63.4

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-Ee------CCCccHhHH--------------------------HHHHHHHh
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-LN------CPGGSIYSV--------------------------LAIYDCMS  160 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN------SPGGsV~aG--------------------------laIyd~L~  160 (240)
                      +|.++..++.+.|..++.++   ++.+. |-      |-|+|+...                          ..+++.|.
T Consensus        32 l~~~~~~~l~~al~~~~~d~---~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  108 (275)
T PLN02664         32 LSLDFFTEFPKALSSLDQNP---NVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIE  108 (275)
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            77888888888887776533   23322 23      334554321                          12456677


Q ss_pred             hcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       161 ~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .++.||.+.+.|.|.+.|..|.++||-  |++.++++|.+-....|
T Consensus       109 ~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G  152 (275)
T PLN02664        109 QCRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLA  152 (275)
T ss_pred             hCCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhC
Confidence            889999999999999999999999997  99999999887554433

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=95.39  E-value=0.15  Score=45.58  Aligned_cols=88  Identities=14%  Similarity=0.114  Sum_probs=63.4

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC-------CccHhH---------------HHHHHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP-------GGSIYS---------------VLAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP-------GGsV~a---------------GlaIyd~L~~~~~~V~Tvv  170 (240)
                      ++.++..++...+..++.++   ++. |.|.+-       |+|+..               ...+++.|..++.||.+.+
T Consensus        26 l~~~~~~~l~~al~~~~~d~---~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  102 (258)
T PRK09076         26 WTADSLQALKQLVLELNADK---DVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAI  102 (258)
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            77788888888887776533   333 333333       344432               1225566778899999999


Q ss_pred             cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.|.+.|.-|+++||-  |++.++++|-+-...-|
T Consensus       103 ~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  136 (258)
T PRK09076        103 NGYAMGGGLECALACDI--RIAEEQAQMALPEASVG  136 (258)
T ss_pred             CCEEecHHHHHHHhCCE--EEecCCCEeeCcccccC
Confidence            99999999999999997  99999999887554433

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=95.35  E-value=0.15  Score=45.47  Aligned_cols=86  Identities=16%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe------CCCccHhHH------------------HHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN------CPGGSIYSV------------------LAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN------SPGGsV~aG------------------laIyd~L~~~~~~V~Tv  169 (240)
                      +|.++..++.+.|..++.++ .+  .|.|.      |.|+|+.+-                  ..+++.|..++.||.+.
T Consensus        23 l~~~~~~~l~~~l~~~~~d~-v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa   99 (256)
T TIGR02280        23 FTAEMHLELREALERVERDD-AR--ALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCA   99 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCC-cE--EEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            67788888888888776532 22  22232      334444210                  11345677889999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      +.|.|.+.|.-|++++|-  |++.++++|.+-...
T Consensus       100 v~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~  132 (256)
T TIGR02280       100 VNGVAAGAGANLALACDI--VLAAESARFIQAFAK  132 (256)
T ss_pred             ECCeeehHHHHHHHhCCE--EEecCCCEEeChhhh
Confidence            999999999999999997  999999988764433

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=95.33  E-value=0.15  Score=45.71  Aligned_cols=88  Identities=20%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceE-EEeC-------CCccHhH----------------HHHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILM-YLNC-------PGGSIYS----------------VLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~INS-------PGGsV~a----------------GlaIyd~L~~~~~~V~Tv  169 (240)
                      +|.++..++.+.+..++.++   ++.+ .|-+       .|+|+..                ...+++.|..++.||.+.
T Consensus        27 l~~~~~~el~~~l~~~~~d~---~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  103 (259)
T TIGR01929        27 FRPLTVKEIIQALDDAREDP---DIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAM  103 (259)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence            67777788888777776422   3332 2333       3444421                123556778888999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.|.|.+.|.-|.++||-  |++.++++|.+-...-|
T Consensus       104 v~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  138 (259)
T TIGR01929       104 VNGYAIGGGHVLHVVCDL--TIAAENARFGQTGPKVG  138 (259)
T ss_pred             EcCEEehHHHHHHHhCCE--EEecCCCEecCcccccc
Confidence            999999999999999997  99999999988665544

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PLN02921 naphthoate synthase

Probab=95.32  E-value=0.17  Score=47.49  Aligned_cols=88  Identities=15%  Similarity=0.138  Sum_probs=66.2

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-e-------CCCccHhHH----------------HHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-N-------CPGGSIYSV----------------LAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N-------SPGGsV~aG----------------laIyd~L~~~~~~V~Tv  169 (240)
                      +|.++..++.+.|..++.+   .+|.+.| -       |.||++...                ..++..|+.++.||.+.
T Consensus        91 l~~~~~~eL~~al~~~~~d---~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa  167 (327)
T PLN02921         91 FRPRTVKELQRAFNDARDD---SSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAM  167 (327)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            7888888888888877653   3344433 2       345655320                12455677888999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.|.|.+.|..|.++||-  |++.++++|.+..+..|
T Consensus       168 VnG~a~GGG~~LalacD~--riA~~~A~f~~pe~~~G  202 (327)
T PLN02921        168 VAGYAVGGGHILHMVCDL--TIAADNAVFGQTGPKVG  202 (327)
T ss_pred             ECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence            999999999999999997  99999999988777655

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=95.29  E-value=0.1  Score=46.41  Aligned_cols=88  Identities=13%  Similarity=0.041  Sum_probs=64.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHH------------HHHHHHHhhcCCCeEEEEccee
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSV------------LAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aG------------laIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      +|.++..++.+.|..++..+   ++. |.|-      |.|+++.+-            ..++..|..++.||.+.+.|.|
T Consensus        29 l~~~~~~~L~~~l~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  105 (249)
T PRK07110         29 FSDELCDQLHEAFDTIAQDP---RYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHA  105 (249)
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCce
Confidence            67777888888877776432   332 2333      345654321            2467778889999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      ...|..|.++||-  |++.++++|-+....-|
T Consensus       106 ~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G  135 (249)
T PRK07110        106 IGGGLVLGLYADI--VVLSRESVYTANFMKYG  135 (249)
T ss_pred             echHHHHHHhCCE--EEEeCCCEecCchhccC
Confidence            9999999999997  99999998876554433

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=95.22  E-value=0.2  Score=44.81  Aligned_cols=86  Identities=15%  Similarity=0.225  Sum_probs=61.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhH---------------HHHHHHHHhhcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYS---------------VLAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~a---------------GlaIyd~L~~~~~~V~Tvv~  171 (240)
                      +|.++..++.+.|..++  +   ++. |.|-      |.|+|+..               ...+++.|..++.||.+.+.
T Consensus        26 l~~~~~~~l~~al~~~~--~---~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  100 (255)
T PRK08150         26 LNDGLIAALRAAFARLP--E---GVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALH  100 (255)
T ss_pred             CCHHHHHHHHHHHHHhh--c---CCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            67777788888777665  2   222 2222      33455432               12356667788999999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.|.+.|.-|.++||-  |++.++++|.+-....|
T Consensus       101 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  133 (255)
T PRK08150        101 GAVVGGGLELASAAHI--RVADESTYFALPEGQRG  133 (255)
T ss_pred             CEEEcHHHHHHHhCCE--EEEeCCCEEeccccccC
Confidence            9999999999999997  99999998877554434

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=95.16  E-value=0.18  Score=48.87  Aligned_cols=96  Identities=18%  Similarity=0.174  Sum_probs=66.7

Q ss_pred             cEEEEccc-----cChhHHHHHHHHHHhhhccCCCCCceEEE-e------CCCccHhHH------------H----HHH-
Q 026362          106 RIIFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYL-N------CPGGSIYSV------------L----AIY-  156 (240)
Q Consensus       106 RIIfl~g~-----Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N------SPGGsV~aG------------l----aIy-  156 (240)
                      ++|.|+-|     ++.++...+...|..++.++   ++.+.| .      |-|||+.+.            .    ..| 
T Consensus        53 ~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~---~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~  129 (407)
T PLN02851         53 RAAILNRPSSLNALTIPMVARLKRLYESWEENP---DIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYK  129 (407)
T ss_pred             EEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHH
Confidence            35666665     88899999999998887543   344333 3      346766421            1    122 


Q ss_pred             --HHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          157 --DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       157 --d~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                        ..|..++.||.+.+.|.|.+.|.-|.++|+-  |++.++++|-+-...-|
T Consensus       130 l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iG  179 (407)
T PLN02851        130 FVYLQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMG  179 (407)
T ss_pred             HHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccC
Confidence              2345678999999999999999999999986  78877777766444433

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=95.14  E-value=0.2  Score=44.77  Aligned_cols=88  Identities=16%  Similarity=0.136  Sum_probs=63.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhH------------------HHHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYS------------------VLAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~a------------------GlaIyd~L~~~~~~V~T  168 (240)
                      +|.++..++...|..++.++   ++. |.|.+.      |+|+..                  ...++..|...+.||.+
T Consensus        28 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  104 (262)
T PRK05995         28 FNETVIAELTAAFRALDADD---SVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIA  104 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEE
Confidence            67778888888887776432   333 333333      444421                  01245567778899999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.|.+.|.-|+++||-  |++.++++|.+-....|
T Consensus       105 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  140 (262)
T PRK05995        105 RVHGDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLG  140 (262)
T ss_pred             EECCEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccc
Confidence            9999999999999999997  99999999887555544

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=95.11  E-value=0.18  Score=44.95  Aligned_cols=86  Identities=15%  Similarity=0.106  Sum_probs=61.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceE-EEeCC-------CccHhHH-------------------HHHHHHHhhcCCCe
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILM-YLNCP-------GGSIYSV-------------------LAIYDCMSWIKPKV  166 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~INSP-------GGsV~aG-------------------laIyd~L~~~~~~V  166 (240)
                      +|.++..++.+.|..++.++   ++.+ .|-+.       |+|+..-                   ..+++.|..++.||
T Consensus        27 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  103 (260)
T PRK05980         27 LNYALIDRLLARLDAIEVDE---SVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPV  103 (260)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCE
Confidence            67788888888887776533   2332 22332       3443210                   12455677788999


Q ss_pred             EEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          167 GTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       167 ~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      .+.+.|.|.+.|.-|+++||-  |++.++++|.+-...
T Consensus       104 Iaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~  139 (260)
T PRK05980        104 IAAVNGLAFGGGCEITEAVHL--AIASERALFAKPEIR  139 (260)
T ss_pred             EEEEcCEEEhhhhHHhHhCCE--EEecCCCEecCcccc
Confidence            999999999999999999997  999999988774443

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=95.10  E-value=0.15  Score=45.28  Aligned_cols=86  Identities=9%  Similarity=0.079  Sum_probs=61.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-EeC------CCccHhHH---------------HHHHHHHhhcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-LNC------PGGSIYSV---------------LAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-INS------PGGsV~aG---------------laIyd~L~~~~~~V~Tvv~  171 (240)
                      +|.++..++...|..++.+   +++.+. |.+      .|+|+...               ...+..|..++.||.+.+.
T Consensus        27 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  103 (249)
T PRK05870         27 VTAEMSAQLRAAVAAAEAD---PDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVN  103 (249)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            6778888888888777653   234433 333      34554321               1234456678899999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      |.|.+.|.-+.++||-  |++.++++|.+....
T Consensus       104 G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~  134 (249)
T PRK05870        104 GAAVGAGLNLALAADV--RIAGPKALFDARFQK  134 (249)
T ss_pred             CEeEchhHHHHHhCCE--EEEcCCCEEeCcccc
Confidence            9999999999999997  999999998765543

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=95.09  E-value=0.14  Score=45.98  Aligned_cols=88  Identities=14%  Similarity=0.149  Sum_probs=63.4

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhH--------------------------HHHHHHHHh
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYS--------------------------VLAIYDCMS  160 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~a--------------------------GlaIyd~L~  160 (240)
                      +|.++...+.+.|..++.+   ++|. |.|.+.      |+|+..                          ...+++.|.
T Consensus        30 l~~~~~~~l~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  106 (272)
T PRK06142         30 MNPAFWSELPEIFRWLDAD---PEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVA  106 (272)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            7888888888888777643   2343 233333      344432                          123456677


Q ss_pred             hcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       161 ~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .++.||.+.+.|.|.+.|.-|+++||-  |++.++++|-+....-|
T Consensus       107 ~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  150 (272)
T PRK06142        107 DCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLG  150 (272)
T ss_pred             hCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhC
Confidence            889999999999999999999999997  99999998877655544

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=95.08  E-value=0.21  Score=44.53  Aligned_cols=84  Identities=17%  Similarity=0.146  Sum_probs=60.4

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhH-------------------HHHHHHHHhhcCCCeE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYS-------------------VLAIYDCMSWIKPKVG  167 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~a-------------------GlaIyd~L~~~~~~V~  167 (240)
                      +|.++...+.+.|..++..+   ++. |.|.+.      |+|+..                   ...+++.|..++.||.
T Consensus        26 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  102 (255)
T PRK07260         26 FNIPMCQEILEALRLAEEDP---SVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVI  102 (255)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEE
Confidence            67777788888877776432   332 333443      344431                   1234456778899999


Q ss_pred             EEEcceechHHHHHHcCCCCCcEEeccCceEeeec
Q 026362          168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ  202 (240)
Q Consensus       168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHq  202 (240)
                      +.+.|.|...|.-|++++|-  |++.++++|.+-.
T Consensus       103 aav~G~a~GgG~~lala~D~--ria~~~a~f~~pe  135 (255)
T PRK07260        103 MCVDGAVAGAAANMAVAADF--CIASTKTKFIQAF  135 (255)
T ss_pred             EEecCeeehhhHHHHHhCCE--EEEeCCCEEechH
Confidence            99999999999999999997  9999999887633

>PLN02888 enoyl-CoA hydratase

Probab=95.07  E-value=0.23  Score=44.70  Aligned_cols=86  Identities=12%  Similarity=0.064  Sum_probs=62.3

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhHH------------HHHHHHHhhcCCCeEEEEccee
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYSV------------LAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~aG------------laIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      +|.++...+.+.|..++.++   ++. |.|.+.      |+|+...            ..++..|..++.||.+.+.|.|
T Consensus        34 l~~~~~~~l~~al~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a  110 (265)
T PLN02888         34 LTRPMMVELAAAFKRLDEDD---SVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFA  110 (265)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCee
Confidence            77788888888888776532   333 333333      4555321            2345567788899999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      .+.|..|+++||-  |++.++++|.+-...
T Consensus       111 ~GgG~~lal~cD~--ria~~~a~f~~pe~~  138 (265)
T PLN02888        111 ITAGFEIALACDI--LVASRGAKFIDTHAK  138 (265)
T ss_pred             echHHHHHHhCCE--EEecCCCEecCcccc
Confidence            9999999999997  999999988774433

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=95.07  E-value=0.097  Score=47.58  Aligned_cols=89  Identities=10%  Similarity=0.038  Sum_probs=61.9

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe--------CCCccHhHH-----------------HHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN--------CPGGSIYSV-----------------LAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN--------SPGGsV~aG-----------------laIyd~L~~~~~~V~T  168 (240)
                      +|.++..++.+.|..++.++..+ + |.|-        |.|+|+..-                 ..+++.|..++.+|.+
T Consensus        35 l~~~~~~eL~~al~~~~~d~~vr-~-vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  112 (278)
T PLN03214         35 MTLAMWRSLDDALTALENDPTVR-G-VVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC  112 (278)
T ss_pred             CCHHHHHHHHHHHHHHHcCCCce-E-EEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            67788888888888777533222 2 2222        333443321                 1144567778899999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.|...|.-|+++||-  |++.++++|-+-....|
T Consensus       113 aV~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lG  148 (278)
T PLN03214        113 AIRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALG  148 (278)
T ss_pred             EEcCcccchHHHHHHhCCE--EEecCCCEecCcHHHhC
Confidence            9999999999999999997  99999998877544433

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=95.05  E-value=0.22  Score=44.83  Aligned_cols=86  Identities=12%  Similarity=0.100  Sum_probs=60.6

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-EeC------CCccHhHH-----------------HHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-LNC------PGGSIYSV-----------------LAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-INS------PGGsV~aG-----------------laIyd~L~~~~~~V~Tv  169 (240)
                      ++.++...+.+.|..++.++   ++.+. |.+      .|+++...                 ..++..|..++.||.+.
T Consensus        36 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  112 (268)
T PRK07327         36 ADARMHRELADIWRDVDRDP---DVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSA  112 (268)
T ss_pred             CCHHHHHHHHHHHHHhhhCC---CceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            67888888888888776533   34333 333      34444311                 12344566778999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      +.|.|.+.|.-|.++||-  |++.++++|-+-...
T Consensus       113 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~  145 (268)
T PRK07327        113 IHGPAVGAGLVAALLADI--SIAAKDARIIDGHTR  145 (268)
T ss_pred             EcCeeeehhhHHHHhCCE--EEecCCCEEeCcccc
Confidence            999999999999999996  999999988764333

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=95.01  E-value=0.26  Score=43.97  Aligned_cols=89  Identities=13%  Similarity=0.081  Sum_probs=63.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHH----------------HHHHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSV----------------LAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aG----------------laIyd~L~~~~~~V~Tvv  170 (240)
                      ++.++..++.+.|..++.++   ++. |.|.      |-|+|+..-                ..+++.|..++.||.+.+
T Consensus        25 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav  101 (249)
T PRK07938         25 LPSAGWFALADAITAAGADP---DTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAV  101 (249)
T ss_pred             CCHHHHHHHHHHHHHhhcCC---CeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            77777888888877776433   232 2233      334665421                124556778889999999


Q ss_pred             cceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .|.|.+.|.-|+++||-  |++.++++|-+-...-|.
T Consensus       102 ~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~  136 (249)
T PRK07938        102 HGFCLGGGIGLVGNADV--IVASDDATFGLPEVDRGA  136 (249)
T ss_pred             cCEEeehHHHHHHhCCE--EEEeCCCEeeCccceecC
Confidence            99999999999999997  999999988775544443

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=94.98  E-value=0.26  Score=43.84  Aligned_cols=88  Identities=13%  Similarity=0.068  Sum_probs=61.6

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeC------CCccHhHH---------------HH-HHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNC------PGGSIYSV---------------LA-IYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INS------PGGsV~aG---------------la-Iyd~L~~~~~~V~Tvv  170 (240)
                      +|.++.+++.+.|..++.+   .++. |.|-+      -|+|+...               .. ++..|+.++.||.+.+
T Consensus        23 l~~~~~~~l~~~l~~~~~d---~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav   99 (255)
T PRK06563         23 FDSAMLDDLALALGEYEAD---DELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAV   99 (255)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEE
Confidence            6777788888887777642   2343 33333      34554310               11 1224667889999999


Q ss_pred             cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.|.+.|..++++||-  |++.++++|-+....-|
T Consensus       100 ~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G  133 (255)
T PRK06563        100 QGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRG  133 (255)
T ss_pred             cCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcC
Confidence            99999999999999997  99999999888665544

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=94.95  E-value=0.18  Score=45.16  Aligned_cols=50  Identities=18%  Similarity=0.042  Sum_probs=42.4

Q ss_pred             HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       155 Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +++.|..++.||.+.+.|.|...|.-|+++||-  |++.++++|.+....-|
T Consensus        95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  144 (266)
T PRK09245         95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLG  144 (266)
T ss_pred             HHHHHHcCCCCEEEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccC
Confidence            455677888999999999999999999999997  99999999887555444

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=94.90  E-value=0.28  Score=43.78  Aligned_cols=85  Identities=15%  Similarity=0.103  Sum_probs=60.9

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-e------CCCccHhHH-------------------HHHHHHHhhcCCCeE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-N------CPGGSIYSV-------------------LAIYDCMSWIKPKVG  167 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N------SPGGsV~aG-------------------laIyd~L~~~~~~V~  167 (240)
                      +|.++..++.+.+..++ ++.   +.+.| -      |.|+|+...                   ..++..|..++.||.
T Consensus        28 l~~~~~~~l~~~~~~~~-d~~---v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  103 (262)
T PRK08140         28 FTREMHRELREALDQVE-DDG---ARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVI  103 (262)
T ss_pred             CCHHHHHHHHHHHHHhc-CCC---ceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence            67788888888887776 332   33222 2      334554321                   114556778899999


Q ss_pred             EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      +.+.|.|...|.-|+++||-  |++.++++|.+-...
T Consensus       104 aav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~  138 (262)
T PRK08140        104 AAVNGVAAGAGANLALACDI--VLAARSASFIQAFVK  138 (262)
T ss_pred             EEECCeeehhHHHHHHhCCE--EEecCCCEEeccccc
Confidence            99999999999999999997  999999998764433

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=94.73  E-value=0.29  Score=43.70  Aligned_cols=88  Identities=11%  Similarity=0.131  Sum_probs=64.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCCC-------ccHhH---------------HHHHHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCPG-------GSIYS---------------VLAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSPG-------GsV~a---------------GlaIyd~L~~~~~~V~Tvv  170 (240)
                      +|.++...+.+.+..++.++   ++. |.|.+.|       +|+..               ...+++.|..++.||.+.+
T Consensus        28 l~~~~~~~l~~al~~~~~d~---~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav  104 (260)
T PRK07657         28 LSLALLEELQNILTQINEEA---NVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAI  104 (260)
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            78888888888888776532   333 3334433       33321               1235566778889999999


Q ss_pred             cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.|...|.-|.++||-  |++.++++|.+-...-|
T Consensus       105 ~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G  138 (260)
T PRK07657        105 NGIALGGGLELALACDF--RIAAESASLGLTETTLA  138 (260)
T ss_pred             cCEeechHHHHHHhCCE--EEeeCCCEEcCchhccC
Confidence            99999999999999997  99999998887655544

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=94.73  E-value=0.35  Score=43.15  Aligned_cols=87  Identities=13%  Similarity=0.093  Sum_probs=61.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-e------CCCccHhH-----------------HHHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-N------CPGGSIYS-----------------VLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N------SPGGsV~a-----------------GlaIyd~L~~~~~~V~Tv  169 (240)
                      ++.++..++.+.|..++  +   ++.+.| -      |.|+++..                 ...++..|...+.||.+.
T Consensus        28 l~~~~~~~L~~~l~~~~--~---~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa  102 (255)
T PRK07112         28 INDRLIAECMDVLDRCE--H---AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAH  102 (255)
T ss_pred             CCHHHHHHHHHHHHHhh--c---CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEE
Confidence            67777777777777665  1   233332 2      34444431                 012445567778999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      +.|.|...|..|+++||-  |++.++++|-+....-|.
T Consensus       103 v~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl  138 (255)
T PRK07112        103 VRGKVNAGGIGFVAASDI--VIADETAPFSLSELLFGL  138 (255)
T ss_pred             EecEEEcchhHHHHcCCE--EEEcCCCEEeCchhhhcc
Confidence            999999999999999997  999999999886655443

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=94.73  E-value=0.3  Score=44.14  Aligned_cols=88  Identities=19%  Similarity=0.208  Sum_probs=63.2

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-Ee-------CCCccHhH----------------HHHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-LN-------CPGGSIYS----------------VLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN-------SPGGsV~a----------------GlaIyd~L~~~~~~V~Tv  169 (240)
                      +|.++..++.+.|..++.++   ++.+. |-       |.|+|+..                ...+++.|..++.||.+.
T Consensus        37 l~~~~~~~l~~al~~~~~d~---~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  113 (273)
T PRK07396         37 FRPKTVKEMIDAFADARDDD---NIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAM  113 (273)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEE
Confidence            67788888888887776433   23322 22       23444321                012455677888999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.|.|...|.-|+++||-  |++.++++|-+-.+.-|
T Consensus       114 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  148 (273)
T PRK07396        114 VAGYAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVG  148 (273)
T ss_pred             ECCEEehHHHHHHHhCCE--EEeeCCcEEeccccccc
Confidence            999999999999999997  99999999888655544

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=94.69  E-value=0.29  Score=44.05  Aligned_cols=88  Identities=16%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-Ee------CCCccHhH------------------HHHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-LN------CPGGSIYS------------------VLAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN------SPGGsV~a------------------GlaIyd~L~~~~~~V~T  168 (240)
                      +|.++...+.+.|..++.+   +++.+. |-      |.|+|+..                  ...++..|..++.||.+
T Consensus        30 l~~~~~~el~~al~~~~~d---~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  106 (265)
T PRK05674         30 FNAQMIRELILALDQVQSD---ASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLA  106 (265)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEE
Confidence            6777777788877777643   233332 22      33455431                  01244556678899999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.|.+.|.-++++||-  |++.++++|.+-...-|
T Consensus       107 aV~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G  142 (265)
T PRK05674        107 VVQGAAFGGALGLISCCDM--AIGADDAQFCLSEVRIG  142 (265)
T ss_pred             EEcCEEEechhhHhhhcCE--EEEeCCCEEeCcccccC
Confidence            9999999999999999997  99999998887444433

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=94.68  E-value=0.32  Score=43.74  Aligned_cols=88  Identities=16%  Similarity=0.081  Sum_probs=63.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC-------CccHhH-----------------HHHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP-------GGSIYS-----------------VLAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP-------GGsV~a-----------------GlaIyd~L~~~~~~V~T  168 (240)
                      +|.++..++.+.|..++.++   ++. |.|.+.       |+++..                 ...+++.|..++.||.+
T Consensus        35 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa  111 (269)
T PRK06127         35 MSLDMWEALPQALAAAEDDD---AIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIA  111 (269)
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            67788888888887776532   232 223333       344321                 01245667788899999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.|.+.|.-|+++||-  |++.++++|.+.....|
T Consensus       112 av~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~G  147 (269)
T PRK06127        112 CIRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLG  147 (269)
T ss_pred             EECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhC
Confidence            9999999999999999997  99999999988765544

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=94.66  E-value=0.3  Score=43.43  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=62.3

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhH----------------HHHHHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYS----------------VLAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~a----------------GlaIyd~L~~~~~~V~Tvv  170 (240)
                      +|.++..++.+.+..++..+   ++. |.|.      |.|+|+..                ...+++.|..++.||.+.+
T Consensus        25 l~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav  101 (257)
T PRK07658         25 LSSQVLHELSELLDQVEKDD---NVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAI  101 (257)
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            67788888888877776432   233 2233      33555431                1235667788899999999


Q ss_pred             cceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      .|.|.+.|.-++++||-  |++.++++|-+-...
T Consensus       102 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~  133 (257)
T PRK07658        102 HGAALGGGLELAMSCHI--RFATESAKLGLPELN  133 (257)
T ss_pred             cCeeeeHHHHHHHhCCE--EEecCCCcccCcccc
Confidence            99999999999999996  999999888765543

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=94.64  E-value=0.34  Score=43.91  Aligned_cols=86  Identities=15%  Similarity=0.147  Sum_probs=61.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeC------CCccHhHH-------------------HHHHHHHhhcCCCeE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNC------PGGSIYSV-------------------LAIYDCMSWIKPKVG  167 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INS------PGGsV~aG-------------------laIyd~L~~~~~~V~  167 (240)
                      +|.++...+...|..++.++   ++. |.|.+      -|+|+...                   ..+++.|..++.||.
T Consensus        32 l~~~m~~el~~al~~~~~d~---~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  108 (275)
T PRK09120         32 MSPTLNREMIDVLDALEFDD---DAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTI  108 (275)
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            77788888888877776432   333 22333      34554321                   124556778889999


Q ss_pred             EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      +.+.|.|...|.-|+++||-  |++.++++|.+-...
T Consensus       109 Aav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~  143 (275)
T PRK09120        109 AMVNGWCFGGGFSPLVACDL--AIAADEAQFGLSEIN  143 (275)
T ss_pred             EEEcCEEechhHHHHHhCCE--EEEeCCcEecCCccc
Confidence            99999999999999999997  999999998874433

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=94.59  E-value=0.88  Score=43.64  Aligned_cols=88  Identities=16%  Similarity=0.255  Sum_probs=63.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHHH-------------------HHHHHHhhcCCCeE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSVL-------------------AIYDCMSWIKPKVG  167 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aGl-------------------aIyd~L~~~~~~V~  167 (240)
                      ++.++...+.+.|..++..+   +|. |.|-      |-|||+....                   .....|..++.||.
T Consensus        33 Ls~~m~~~L~~al~~~~~d~---~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvI  109 (381)
T PLN02988         33 LSFHMISRLLQLFLAFEEDP---SVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQV  109 (381)
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence            78888899999998886533   233 3333      3366664311                   12235667889999


Q ss_pred             EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.+.|.|.+.|.-|.++|+-  |++.++++|-+-...-|
T Consensus       110 a~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iG  146 (381)
T PLN02988        110 SILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETALG  146 (381)
T ss_pred             EEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcC
Confidence            99999999999999999996  99999988876554444

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=94.59  E-value=0.28  Score=46.08  Aligned_cols=86  Identities=10%  Similarity=0.122  Sum_probs=60.9

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceE-EEeCCC-------ccHhHH-------------------HHHHHHHhhcCCCe
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILM-YLNCPG-------GSIYSV-------------------LAIYDCMSWIKPKV  166 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~INSPG-------GsV~aG-------------------laIyd~L~~~~~~V  166 (240)
                      +|.++...+.+.+..++.+   .+|.+ .|.+.|       +|+..-                   ..++..|..++.||
T Consensus        27 l~~~m~~~L~~~l~~~~~d---~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv  103 (342)
T PRK05617         27 LSLEMIRAIDAALDAWEDD---DAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPY  103 (342)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence            6777788888887777642   33433 333333       443210                   12345677888999


Q ss_pred             EEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          167 GTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       167 ~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      .+.+.|.|.+.|.-|.++||-  |++.++++|.+-...
T Consensus       104 IAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~  139 (342)
T PRK05617        104 IALMDGIVMGGGVGISAHGSH--RIVTERTKMAMPETG  139 (342)
T ss_pred             EEEEcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccc
Confidence            999999999999999999996  999999988875443

>PRK08139 enoyl-CoA hydratase; Validated

Probab=94.58  E-value=0.41  Score=43.08  Aligned_cols=89  Identities=12%  Similarity=0.162  Sum_probs=63.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-eCC------CccHhHH----------------HHHHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-NCP------GGSIYSV----------------LAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSP------GGsV~aG----------------laIyd~L~~~~~~V~Tvv  170 (240)
                      +|.++..++.+.|..++..   +++.+.| .+.      |+|+...                ..+++.|..++.||.+.+
T Consensus        35 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  111 (266)
T PRK08139         35 LSEAMLAALQAALDAIAAD---PSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARV  111 (266)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            6778888888887777642   2343333 333      4444210                124556778889999999


Q ss_pred             cceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .|.|...|.-|+++||-  |++.++++|-+-....|.
T Consensus       112 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  146 (266)
T PRK08139        112 HGIATAAGCQLVASCDL--AVAADTARFAVPGVNIGL  146 (266)
T ss_pred             CceeeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCC
Confidence            99999999999999997  999999998776655453

>PRK08321 naphthoate synthase; Validated

Probab=94.55  E-value=0.41  Score=44.06  Aligned_cols=89  Identities=16%  Similarity=0.130  Sum_probs=62.2

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-----------EeCCCccHhH-----------------------HH---HHH
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-----------LNCPGGSIYS-----------------------VL---AIY  156 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-----------INSPGGsV~a-----------------------Gl---aIy  156 (240)
                      +|.++..++...|..++.++..+-|.|.           .=|.|+|+..                       ..   .++
T Consensus        49 l~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (302)
T PRK08321         49 FRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQ  128 (302)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHH
Confidence            7788888888888877653322222221           1255666532                       01   234


Q ss_pred             HHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEec-cCceEeeecCC
Q 026362          157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM-PNARIMLNQPQ  204 (240)
Q Consensus       157 d~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~-PnA~iMIHqP~  204 (240)
                      +.|..++.||.+.+.|.|...|.-|+++||-  |++. ++++|.+-...
T Consensus       129 ~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~  175 (302)
T PRK08321        129 RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDAD  175 (302)
T ss_pred             HHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccc
Confidence            5577788999999999999999999999997  9998 68998775444

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=94.53  E-value=0.32  Score=44.57  Aligned_cols=46  Identities=11%  Similarity=0.013  Sum_probs=39.7

Q ss_pred             HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeec
Q 026362          155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ  202 (240)
Q Consensus       155 Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHq  202 (240)
                      ++..|..++.||.+.+.|.|.+.|.-|+++||-  |++.++++|-+-.
T Consensus       119 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~pe  164 (302)
T PRK08272        119 GFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYPP  164 (302)
T ss_pred             HHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCcc
Confidence            455677888999999999999999999999997  9999999886533

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=94.52  E-value=0.19  Score=45.99  Aligned_cols=51  Identities=8%  Similarity=-0.113  Sum_probs=42.6

Q ss_pred             HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       155 Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      ++..|+.++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-....|.
T Consensus       110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl  160 (288)
T PRK08290        110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGI  160 (288)
T ss_pred             HHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCc
Confidence            334567888999999999999999999999997  999999998875555444

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=94.45  E-value=0.43  Score=42.68  Aligned_cols=88  Identities=13%  Similarity=0.069  Sum_probs=60.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceE-EEeCC-------CccHhHHH----------HH--HHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILM-YLNCP-------GGSIYSVL----------AI--YDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~INSP-------GGsV~aGl----------aI--yd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++..++...|..++.++   ++.+ .|-+.       |+|+....          .+  +..+..++.||.+.+.|.
T Consensus        28 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~  104 (259)
T PRK06494         28 LHLDAHFELEEVFDDFAADP---EQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGV  104 (259)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCE
Confidence            67777888888877776533   2332 23332       45543210          11  122335678999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.+.|.-|.++||-  |++.++++|-+....-|
T Consensus       105 a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  135 (259)
T PRK06494        105 AMGGGFELALACDL--IVAAENATFALPEPRVG  135 (259)
T ss_pred             EecHHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence            99999999999997  99999999888665544

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=94.35  E-value=0.52  Score=41.87  Aligned_cols=91  Identities=10%  Similarity=0.076  Sum_probs=60.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe-----CCCccHhH-----------------HHHHHHHHhhcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS-----------------VLAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN-----SPGGsV~a-----------------GlaIyd~L~~~~~~V~Tvv~  171 (240)
                      ++.+....+...+..++.++....+.|.-.     |.|+|+..                 ...+++.|..++.||.+.+.
T Consensus        23 l~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~  102 (239)
T PLN02267         23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVT  102 (239)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            777888888888877765322111222212     33455421                 01144557778899999999


Q ss_pred             ceechHHHHHHcCCCCCcEEecc-CceEeeecCCCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMP-NARIMLNQPQSG  206 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~P-nA~iMIHqP~~g  206 (240)
                      |.|...|..|++++|-  |++.+ .++|.+-.-..|
T Consensus       103 G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~G  136 (239)
T PLN02267        103 GHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIG  136 (239)
T ss_pred             CcchHHHHHHHHHCCE--EEecCCCCeEeccccccC
Confidence            9999999999999996  89874 567766444433

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=94.31  E-value=0.31  Score=43.74  Aligned_cols=84  Identities=17%  Similarity=0.143  Sum_probs=60.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-EeC-------CCccHhH----------------HHHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-LNC-------PGGSIYS----------------VLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-INS-------PGGsV~a----------------GlaIyd~L~~~~~~V~Tv  169 (240)
                      +|.++.+++...|..++.+   +++.+. |.+       .|+|+..                ...+++.|..++.||.+.
T Consensus        32 l~~~~~~~l~~~l~~~~~d---~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa  108 (262)
T PRK06144         32 MTWAMYEGLAEICEAIAAD---PSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAA  108 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            6777788888887777643   233333 333       2444421                112445667888999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeec
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ  202 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHq  202 (240)
                      +.|.|.+.|.-+++++|-  |++.++++|-+-.
T Consensus       109 v~G~a~GgG~~lala~D~--~ia~~~a~f~~pe  139 (262)
T PRK06144        109 IAGACVGGGAAIAAACDL--RIATPSARFGFPI  139 (262)
T ss_pred             ECCeeeehHHHHHHhCCE--EEecCCCEeechh
Confidence            999999999999999997  9999999987643

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=94.14  E-value=0.45  Score=42.49  Aligned_cols=86  Identities=12%  Similarity=0.118  Sum_probs=60.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCCC------ccHhH------------------HHHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCPG------GSIYS------------------VLAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSPG------GsV~a------------------GlaIyd~L~~~~~~V~T  168 (240)
                      +|.++..++...|..++.+   +++. |.|.+.|      +|+..                  ...+++.|..++.||.+
T Consensus        30 l~~~~~~el~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  106 (260)
T PRK07827         30 LSARLVAQLHDGLRAAAAD---PAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIA  106 (260)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            6777778888877766642   2333 3334444      33321                  11245556777899999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      .+.|.|.+.|.-|+++||-  |++.++++|-+-...
T Consensus       107 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~  140 (260)
T PRK07827        107 AIDGHVRAGGFGLVGACDI--VVAGPESTFALTEAR  140 (260)
T ss_pred             EEcCeeecchhhHHHhCCE--EEEcCCCEEeCcccc
Confidence            9999999999999999996  999999888774443

>PRK08788 enoyl-CoA hydratase; Validated

Probab=94.07  E-value=0.71  Score=42.52  Aligned_cols=91  Identities=12%  Similarity=-0.014  Sum_probs=60.0

Q ss_pred             cChhHHHHHHHHHHhhhcc--CCCCCce-EEEeC-------CCccHhHH----------------HHHHHHHh------h
Q 026362          114 INSMVAQRAISQLVTLATI--DEDADIL-MYLNC-------PGGSIYSV----------------LAIYDCMS------W  161 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~--d~~~~I~-l~INS-------PGGsV~aG----------------laIyd~L~------~  161 (240)
                      +|.++..++.+.+..++..  +.+.+|. |.|-+       .|+|+...                ..+++.+.      .
T Consensus        40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  119 (287)
T PRK08788         40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG  119 (287)
T ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence            6777788888888877650  0122343 33333       34444321                12344333      4


Q ss_pred             cCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       162 ~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.||.+.+.|.|.+.|.-|.++||-  |++.++++|-+-...-|
T Consensus       120 ~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lG  162 (287)
T PRK08788        120 AGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFN  162 (287)
T ss_pred             CCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhC
Confidence            67899999999999999999999997  99999998776444333

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=94.00  E-value=0.26  Score=45.27  Aligned_cols=48  Identities=13%  Similarity=-0.049  Sum_probs=42.1

Q ss_pred             HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       155 Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      .+..|..++.||.+.+.|.|.+.|.-|.++||-  |++.++++|-+-...
T Consensus       104 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~  151 (298)
T PRK12478        104 KFMAIWRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSR  151 (298)
T ss_pred             HHHHHHhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccc
Confidence            345677788999999999999999999999997  999999999886655

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=93.94  E-value=0.47  Score=45.88  Aligned_cols=88  Identities=15%  Similarity=0.142  Sum_probs=63.4

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceE-EEe------CCCccHhHHH----------------H---HHHHHhhcCCCeE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILM-YLN------CPGGSIYSVL----------------A---IYDCMSWIKPKVG  167 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~IN------SPGGsV~aGl----------------a---Iyd~L~~~~~~V~  167 (240)
                      +|.++...+...|..++.++   +|.+ .|-      |-|||+.+-.                .   ++..|..++.||.
T Consensus        61 Ls~~m~~~L~~al~~~~~D~---~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvI  137 (401)
T PLN02157         61 LTTHMGYRLQKLYKNWEEDP---NIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHV  137 (401)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            78888888888888776533   3332 233      4567764210                1   2234778889999


Q ss_pred             EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.+.|.|.+.|.-|.++|+-  |++.++++|-+-...-|
T Consensus       138 A~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iG  174 (401)
T PLN02157        138 AILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIG  174 (401)
T ss_pred             EEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcC
Confidence            99999999999999999996  89988888877554444

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=93.91  E-value=0.47  Score=45.47  Aligned_cols=88  Identities=13%  Similarity=0.073  Sum_probs=64.8

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-eCC-------CccHhH------------------HHHHHHHHhhcCCCeE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-NCP-------GGSIYS------------------VLAIYDCMSWIKPKVG  167 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSP-------GGsV~a------------------GlaIyd~L~~~~~~V~  167 (240)
                      ++.++...+...+..++.+   ++|.+.| -+-       |+++.+                  ...+++.|..++.||.
T Consensus        52 ls~~ml~eL~~al~~~~~D---~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVI  128 (360)
T TIGR03200        52 YTTDMVKAIILAFRRASSD---RDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVI  128 (360)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            7888888899988887653   2344333 222       344321                  1235566778899999


Q ss_pred             EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.+.|.|.+.|.-|.++||-  |++.++++|-+-.+.-|
T Consensus       129 AAVnG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlG  165 (360)
T TIGR03200       129 CRVNGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHG  165 (360)
T ss_pred             EEECCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccC
Confidence            99999999999999999997  99999999888666644

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=93.84  E-value=0.46  Score=47.29  Aligned_cols=92  Identities=15%  Similarity=0.144  Sum_probs=68.7

Q ss_pred             ccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCc----------cHhHHHHHHHHHhhcCCCeEEEEcceechHHHH
Q 026362          111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGG----------SIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI  180 (240)
Q Consensus       111 ~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGG----------sV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~asl  180 (240)
                      +|.++.+.++....-+. +.... .-||...+||||-          -+..+..+++.+.....|..+++.|-+++.|.+
T Consensus       328 ~G~~~~~~~~K~~r~i~-~a~~~-~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~  405 (512)
T TIGR01117       328 AGCLDIDSSDKIARFIR-FCDAF-NIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL  405 (512)
T ss_pred             cCCCCHHHHHHHHHHHH-HHHHc-CCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence            46788887776655444 33323 5689999999995          355666777788888899999999999998776


Q ss_pred             HHcC----CCCCcEEeccCceEeeecCCCC
Q 026362          181 ILAG----GEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       181 Il~a----G~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+++    ++  ..++.|++++.+=.|.+.
T Consensus       406 am~~~~~~~d--~~~a~p~a~~~v~~pe~a  433 (512)
T TIGR01117       406 AMCSKHLGAD--QVYAWPTAEIAVMGPAGA  433 (512)
T ss_pred             HhccccCCCC--EEEEcCCCeEeecCHHHH
Confidence            6654    44  378889999999888763

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=93.83  E-value=0.54  Score=42.03  Aligned_cols=85  Identities=16%  Similarity=0.126  Sum_probs=60.9

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhHH----------------HHHHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYSV----------------LAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~aG----------------laIyd~L~~~~~~V~Tvv  170 (240)
                      +|.++..++...|..++  |+  ++. |.+.+.      |+|+..-                ..++..|..++.||.+.+
T Consensus        30 l~~~~~~~l~~~l~~~~--d~--~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav  105 (260)
T PRK07659         30 LDEPMLKELLQALKEVA--ES--SAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAI  105 (260)
T ss_pred             CCHHHHHHHHHHHHHhc--CC--CeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence            77788888888887773  32  333 333433      4554321                113445667789999999


Q ss_pred             cceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      .|.|.+.|.-|++++|-  |++.++++|-+....
T Consensus       106 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~  137 (260)
T PRK07659        106 HGPAAGLGLSIALTADY--VIADISAKLAMNFIG  137 (260)
T ss_pred             cCceecHHHHHHHhCCE--EEEcCCCEEcCchhh
Confidence            99999999999999997  999999988776644

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=93.77  E-value=0.45  Score=42.42  Aligned_cols=86  Identities=13%  Similarity=0.101  Sum_probs=60.6

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-eC------CCccHhH-------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-NC------PGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NS------PGGsV~a-------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++..++.+.+..++.++   ++.+.| -+      -|+|+..             ...+++.|..++.||.+.+.|.
T Consensus        28 l~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~  104 (257)
T PRK05862         28 LNDALMDELGAALAAFDADE---GIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGY  104 (257)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence            67777788888777776432   333222 22      2444321             1234566778889999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      |...|.-+.++||-  |++.++++|-+-...
T Consensus       105 a~GgG~~lalacD~--~ia~~~a~f~~pe~~  133 (257)
T PRK05862        105 ALGGGCELAMMCDI--IIAADTAKFGQPEIK  133 (257)
T ss_pred             EeHHHHHHHHHCCE--EEEeCCCEEeCchhc
Confidence            99999999999997  999988888764443

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=93.65  E-value=0.38  Score=42.82  Aligned_cols=91  Identities=13%  Similarity=0.137  Sum_probs=68.2

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEEEe-----CCCccHhHH----------------HHHHHHHhhcCCCeEEEEc
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV----------------LAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN-----SPGGsV~aG----------------laIyd~L~~~~~~V~Tvv~  171 (240)
                      -+|.++...+.+.|..++..+ .-...|...     |-|+|+..-                ..++..|+.++.||.+.+.
T Consensus        28 al~~~~~~~l~~al~~~~~d~-~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  106 (257)
T COG1024          28 ALNLEMLDELAEALDEAEADP-DVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVN  106 (257)
T ss_pred             CCCHHHHHHHHHHHHHHhhCC-CeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEc
Confidence            478888888999888887642 222222222     224555431                1266788899999999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.|...|.-|+++||-  |++.++++|-+....-|
T Consensus       107 G~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iG  139 (257)
T COG1024         107 GYALGGGLELALACDI--RIAAEDAKFGLPEVNLG  139 (257)
T ss_pred             ceEeechhhhhhcCCe--EEecCCcEecCcccccc
Confidence            9999999999999997  99999999999877654

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=93.58  E-value=0.58  Score=38.76  Aligned_cols=39  Identities=23%  Similarity=0.170  Sum_probs=30.7

Q ss_pred             hhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEee
Q 026362          160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML  200 (240)
Q Consensus       160 ~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMI  200 (240)
                      +..+.||.+++.|.|+|.+.+|+++|++  .++.|.+.+..
T Consensus         3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgs   41 (154)
T PF01343_consen    3 KASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGS   41 (154)
T ss_dssp             HHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE-
T ss_pred             cccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEE
Confidence            5667899999999999999999999996  88889888766

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=93.54  E-value=0.69  Score=41.22  Aligned_cols=86  Identities=17%  Similarity=0.111  Sum_probs=59.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHHH----------HHHHHH-hhcCCCeEEEEcceec
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSVL----------AIYDCM-SWIKPKVGTVCFGVAA  175 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aGl----------aIyd~L-~~~~~~V~Tvv~G~Aa  175 (240)
                      +|.++..++.+.|..++.++   +|. |.|.      |.|+|+....          .+...+ ..++.||.+.+.|.|.
T Consensus        27 l~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~  103 (254)
T PRK08252         27 VNAAVAQGLAAALDELDADP---DLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYAL  103 (254)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEe
Confidence            77888888888888876533   333 2333      3455553210          111111 3567899999999999


Q ss_pred             hHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          176 SQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       176 S~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      +.|.-++++||-  |++.++++|-+-...
T Consensus       104 GgG~~lalacD~--~ia~~~a~f~~pe~~  130 (254)
T PRK08252        104 AGGFELALACDL--IVAARDAKFGLPEVK  130 (254)
T ss_pred             hHHHHHHHhCCE--EEEeCCCEEeCchhh
Confidence            999999999996  999999988764443

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=93.22  E-value=0.91  Score=43.31  Aligned_cols=95  Identities=14%  Similarity=0.142  Sum_probs=67.0

Q ss_pred             EEEEccc-----cChhHHHHHHHHHHhhhccCCCCCceEEE-eC------CCccHhHH----------H-------HHHH
Q 026362          107 IIFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYL-NC------PGGSIYSV----------L-------AIYD  157 (240)
Q Consensus       107 IIfl~g~-----Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NS------PGGsV~aG----------l-------aIyd  157 (240)
                      +|.|+.|     +|.++...+...|..++.+   .+|.+.| .+      -|||+..-          .       .+..
T Consensus        23 ~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d---~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~   99 (379)
T PLN02874         23 VITLNRPRQLNVISLSVVSLLAEFLEQWEKD---DSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCY   99 (379)
T ss_pred             EEEECCCccccCCCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHH
Confidence            3455555     7888888888888877653   2344433 33      34554321          0       1123


Q ss_pred             HHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          158 CMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       158 ~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|..++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|
T Consensus       100 ~i~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iG  146 (379)
T PLN02874        100 HIHTYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVG  146 (379)
T ss_pred             HHHhCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccC
Confidence            466778999999999999999999999997  99999998887555544

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=93.18  E-value=0.87  Score=39.87  Aligned_cols=87  Identities=16%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHhH--------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIYS--------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~a--------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      ++.++.+++.+.+..++ .+  ..+ |.|...      |+|+..              ...++..|...+.||.+.+.|.
T Consensus        26 l~~~~~~~l~~~l~~~~-~~--~~v-vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~  101 (229)
T PRK06213         26 LSPAMIDALNAALDQAE-DD--RAV-VVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH  101 (229)
T ss_pred             CCHHHHHHHHHHHHHhh-cc--CcE-EEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence            67777888888877665 22  222 333333      344321              2234556677889999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccC-ceEeeecCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPN-ARIMLNQPQSG  206 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~Pn-A~iMIHqP~~g  206 (240)
                      |.+.|.-|++++|-  |++.++ ++|-+-...-|
T Consensus       102 a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~G  133 (229)
T PRK06213        102 AIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIG  133 (229)
T ss_pred             eeHHHHHHHHhCCe--eeEecCCcEEECchhhhC
Confidence            99999999999996  999998 88877544433

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=93.14  E-value=0.54  Score=43.79  Aligned_cols=91  Identities=16%  Similarity=0.157  Sum_probs=69.2

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE----eCCCccHhHH-------------HHHHHHHhhcCCCeEEEEcceech
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV-------------LAIYDCMSWIKPKVGTVCFGVAAS  176 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I----NSPGGsV~aG-------------laIyd~L~~~~~~V~Tvv~G~AaS  176 (240)
                      ++..+..++...+..++.++..+-|.|+=    =|-|.|+.+.             +.-++.+..++.||...+.|+|..
T Consensus        61 l~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~Alg  140 (290)
T KOG1680|consen   61 LCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFALG  140 (290)
T ss_pred             ccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceeec
Confidence            77788899999999898765444333321    1224444322             335667777889999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          177 QAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.-|.+.||-  |++.++|.|++-++..|
T Consensus       141 GG~ELalmCDi--rva~~~Akfg~~~~~~G  168 (290)
T KOG1680|consen  141 GGLELALMCDI--RVAGEGAKFGFFEIRMG  168 (290)
T ss_pred             cchhhhhhcce--EeccCCCeecccccccC
Confidence            99999999998  99999999999888765

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=93.02  E-value=0.91  Score=40.58  Aligned_cols=89  Identities=12%  Similarity=0.070  Sum_probs=60.2

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHhHHH---------------H-H--HHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIYSVL---------------A-I--YDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~aGl---------------a-I--yd~L~~~~~~V~Tv  169 (240)
                      +|.++...+.+.|..++.++..+  .|.|-+.      |+|+..-.               . +  +..++.++.||.+.
T Consensus        29 l~~~~~~~l~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaa  106 (263)
T PRK07799         29 LSTEMLRIMVDAWDRVDNDPDIR--SCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAA  106 (263)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEE
Confidence            77788888888888777533221  2333333      45543210               0 1  11134678899999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.|.|.+.|.-|++++|-  |++.++++|-+.....|
T Consensus       107 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  141 (263)
T PRK07799        107 VEGPAIAGGTEILQGTDI--RVAGESAKFGISEAKWS  141 (263)
T ss_pred             ECCeEeccHHHHHHhCCE--EEecCCCEecCcccccC
Confidence            999999999999999997  99999998877554444

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=92.51  E-value=0.31  Score=48.01  Aligned_cols=94  Identities=18%  Similarity=0.192  Sum_probs=66.2

Q ss_pred             ccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHHH
Q 026362          111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI  180 (240)
Q Consensus       111 ~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~asl  180 (240)
                      +|.++.+.+.....-+...+. . .=||....|+||          |-+..|-.+.+++...+.|+.|++.|-+.+.|.+
T Consensus       307 ~G~~~~~~a~K~arfi~lcd~-~-~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~  384 (493)
T PF01039_consen  307 AGALDPDGARKAARFIRLCDA-F-NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYY  384 (493)
T ss_dssp             GGEB-HHHHHHHHHHHHHHHH-T-T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHH
T ss_pred             cccCChHHHHHHHHHHHHHHh-h-CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchh
Confidence            367888877655554433433 2 358999999999          4566788999999999999999999999998887


Q ss_pred             HHcCCCCC--cEEeccCceEeeecCCCC
Q 026362          181 ILAGGEKG--MRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       181 Il~aG~kg--kR~a~PnA~iMIHqP~~g  206 (240)
                      .+++..-+  -.++.|+|++-+-.|.+.
T Consensus       385 am~~~~~~~~~~~Awp~a~~~vm~~e~a  412 (493)
T PF01039_consen  385 AMCGRGYGPDFVFAWPTAEIGVMGPEGA  412 (493)
T ss_dssp             HTTGGGGTTSEEEEETT-EEESS-HHHH
T ss_pred             hhcccccchhhhhhhhcceeeecChhhh
Confidence            77766222  378889999999888754

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=92.20  E-value=0.89  Score=40.63  Aligned_cols=84  Identities=14%  Similarity=0.059  Sum_probs=57.9

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-Ee------CCCccHhHHH-------H------HHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-LN------CPGGSIYSVL-------A------IYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN------SPGGsV~aGl-------a------Iyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++...+.+.|..++.++   ++.+. |.      |.|+|+....       .      .+..+..++.||.+.+.|.
T Consensus        27 l~~~~~~~l~~~l~~~~~d~---~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~  103 (254)
T PRK08259         27 VDGPTAAALADAFRAFDADD---AASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGY  103 (254)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCE
Confidence            67788888888888776532   33322 22      3455554211       0      0111225678999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeec
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQ  202 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHq  202 (240)
                      |...|.-++++||-  |++.++++|-+-.
T Consensus       104 a~GgG~~lalacD~--~ia~~~a~f~~pe  130 (254)
T PRK08259        104 AVAGGLELALWCDL--RVAEEDAVFGVFC  130 (254)
T ss_pred             EEhHHHHHHHhCCE--EEecCCCEecCcc
Confidence            99999999999997  9999999887644

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=91.19  E-value=1.2  Score=44.78  Aligned_cols=83  Identities=12%  Similarity=0.130  Sum_probs=57.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-e-------CCCccHhHH-------------------HHHHHHHhhcCCCe
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-N-------CPGGSIYSV-------------------LAIYDCMSWIKPKV  166 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N-------SPGGsV~aG-------------------laIyd~L~~~~~~V  166 (240)
                      ++.++...+.+.|..++..+  ++|.+.| -       |.|+++...                   ..+++.|+.++.||
T Consensus        45 l~~~~l~eL~~al~~~~~~d--~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPv  122 (546)
T TIGR03222        45 YDLGVDIELHDAVQRIRFEH--PEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKF  122 (546)
T ss_pred             CCHHHHHHHHHHHHHHHhcC--CCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence            57777788888887776222  2344322 2       345554321                   12445667788999


Q ss_pred             EEEEcceechHHHHHHcCCCCCcEEeccC--ceEee
Q 026362          167 GTVCFGVAASQAAIILAGGEKGMRYAMPN--ARIML  200 (240)
Q Consensus       167 ~Tvv~G~AaS~aslIl~aG~kgkR~a~Pn--A~iMI  200 (240)
                      .+.+.|.|.+.|.-|.++||-  |++.++  ++|-+
T Consensus       123 IAAVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~  156 (546)
T TIGR03222       123 LAAVNGTCAGGGYELALACDE--IMLVDDRSSSVSL  156 (546)
T ss_pred             EEEECCEeehHHHHHHHhCCE--EEEecCCCcEEEc
Confidence            999999999999999999996  888876  45554

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=91.14  E-value=1.5  Score=45.18  Aligned_cols=88  Identities=15%  Similarity=0.146  Sum_probs=64.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhH------------------HHHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYS------------------VLAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~a------------------GlaIyd~L~~~~~~V~T  168 (240)
                      ++.++...+.+.|..++.++   ++. |.|-+.      |+|+.+                  +..+++.|..++.||.+
T Consensus        31 l~~~~~~eL~~al~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIA  107 (714)
T TIGR02437        31 FDRATLASLDQALDAIKAQS---SLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVA  107 (714)
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            67788888888888776533   233 233333      344421                  23467778889999999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.|.+.|.-|.++||-  |++.++++|-+-...-|
T Consensus       108 ai~G~alGGGleLalacD~--ria~~~a~fglPEv~lG  143 (714)
T TIGR02437       108 AINGIALGGGCECVLATDF--RIADDTAKIGLPETKLG  143 (714)
T ss_pred             EECCeeecHHHHHHHhCCE--EEEeCCCEEecchhhcC
Confidence            9999999999999999996  99999999887554433

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=91.02  E-value=0.61  Score=43.81  Aligned_cols=83  Identities=14%  Similarity=0.214  Sum_probs=62.8

Q ss_pred             CCCceEEEeCCCccHh-------HHHHHHHHHh---hcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          135 DADILMYLNCPGGSIY-------SVLAIYDCMS---WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       135 ~~~I~l~INSPGGsV~-------aGlaIyd~L~---~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      .-||..+|++||-...       .+-+|--.|.   ..+.||.+++.|.-.|.|++-+..|++  .+++.|+++.+=.|.
T Consensus       150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPE  227 (317)
T COG0825         150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPE  227 (317)
T ss_pred             CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChh
Confidence            4689999999996542       3455554443   567899999999999999999999996  788899999999998


Q ss_pred             CC---CCCCHHHHHHHHH
Q 026362          205 SG---SGGHVEDVKRQVN  219 (240)
Q Consensus       205 ~g---~~G~a~di~~~a~  219 (240)
                      +.   .|-+++--.+.|+
T Consensus       228 G~AsILWkD~~ka~eAAe  245 (317)
T COG0825         228 GCASILWKDASKAKEAAE  245 (317)
T ss_pred             hhhhhhhcChhhhHHHHH
Confidence            65   2555444333333

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=90.94  E-value=1.6  Score=44.95  Aligned_cols=86  Identities=13%  Similarity=0.089  Sum_probs=60.8

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceE--EEe------CCCccHhH----------------HHHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILM--YLN------CPGGSIYS----------------VLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l--~IN------SPGGsV~a----------------GlaIyd~L~~~~~~V~Tv  169 (240)
                      +|.++..++.+.|..++.+   +++..  .+.      |-|+|+..                ...++..|..++.||.+.
T Consensus        26 l~~~~~~eL~~~l~~~~~d---~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  102 (699)
T TIGR02440        26 LKAEFADQVSEILSQLKRD---KSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAA  102 (699)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            6777788888888777643   34442  223      33455432                123567788889999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccC--ceEeeecCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPN--ARIMLNQPQ  204 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~Pn--A~iMIHqP~  204 (240)
                      +.|.|.+.|.-|.++||-  |++.++  ++|-+....
T Consensus       103 VnG~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~  137 (699)
T TIGR02440       103 IHGACLGGGLELALACHS--RVCSDDDKTVLGLPEVQ  137 (699)
T ss_pred             ECCEeecHHHHHHHhCCE--EEEcCCCCcEEechhhc
Confidence            999999999999999996  888876  455554433

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=90.94  E-value=1.1  Score=45.09  Aligned_cols=83  Identities=13%  Similarity=0.140  Sum_probs=57.8

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-e-------CCCccHhHH--------------H-----HHHHHHhhcCCCe
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-N-------CPGGSIYSV--------------L-----AIYDCMSWIKPKV  166 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N-------SPGGsV~aG--------------l-----aIyd~L~~~~~~V  166 (240)
                      ++.++...+.+.|..++..+  .+|.+.| -       |.|+++..-              .     .+.+.|+.++.||
T Consensus        49 l~~~m~~eL~~al~~~~~~d--~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPv  126 (550)
T PRK08184         49 YDLGVDIELHDALQRIRFEH--PEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKF  126 (550)
T ss_pred             CCHHHHHHHHHHHHHHHhcC--CCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence            67778888888888776323  2343322 2       344554321              0     1445667788999


Q ss_pred             EEEEcceechHHHHHHcCCCCCcEEeccC--ceEee
Q 026362          167 GTVCFGVAASQAAIILAGGEKGMRYAMPN--ARIML  200 (240)
Q Consensus       167 ~Tvv~G~AaS~aslIl~aG~kgkR~a~Pn--A~iMI  200 (240)
                      .+.+.|.|.+.|..|.++||-  |++.++  ++|-+
T Consensus       127 IAAVnG~a~GGG~~LALacD~--rIas~~~~a~fg~  160 (550)
T PRK08184        127 IAAVNGTCAGGGYELALACDE--IVLVDDRSSAVSL  160 (550)
T ss_pred             EEEECCEeehHHHHHHHhCCE--EEEecCCCcEEEc
Confidence            999999999999999999996  898876  66655

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.38  E-value=1.4  Score=45.38  Aligned_cols=88  Identities=19%  Similarity=0.220  Sum_probs=63.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeC------CCccHhHH------------------HHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNC------PGGSIYSV------------------LAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INS------PGGsV~aG------------------laIyd~L~~~~~~V~T  168 (240)
                      +|.++...+.+.+..++.++   ++. |.|.+      -|+|+..-                  ..+++.|..++.||.+
T Consensus        31 l~~~~~~~L~~al~~~~~d~---~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA  107 (715)
T PRK11730         31 LDRATLASLGEALDALEAQS---DLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVA  107 (715)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            67788888888887776532   333 33333      34554321                  1245567788899999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.|...|.-|+++||-  |++.++++|-+-...-|
T Consensus       108 av~G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lG  143 (715)
T PRK11730        108 AINGYALGGGCECVLATDY--RVASPDARIGLPETKLG  143 (715)
T ss_pred             EECCEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcC
Confidence            9999999999999999997  99999998877554433

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=89.81  E-value=2.9  Score=43.08  Aligned_cols=88  Identities=13%  Similarity=0.083  Sum_probs=62.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceE-EEeCC-------CccHhH----------------HHHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILM-YLNCP-------GGSIYS----------------VLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~INSP-------GGsV~a----------------GlaIyd~L~~~~~~V~Tv  169 (240)
                      +|.++..++...|..++.+   +++.. .|-+.       |+|+..                ...+++.|..++.||.+.
T Consensus        31 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa  107 (708)
T PRK11154         31 LKAEFAEQVRAILKQLRED---KELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAA  107 (708)
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            6777778888887777652   34543 33332       344421                123567788899999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCc--eEeeecCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNA--RIMLNQPQSG  206 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA--~iMIHqP~~g  206 (240)
                      +.|.|.+.|.-|.++||-  |++.+++  +|-+....-|
T Consensus       108 V~G~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lG  144 (708)
T PRK11154        108 IHGACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLG  144 (708)
T ss_pred             ECCeeechHHHHHHhCCE--EEEeCCCCceEeCccccCC
Confidence            999999999999999996  9999875  6665554433

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=89.09  E-value=10  Score=38.51  Aligned_cols=92  Identities=15%  Similarity=0.120  Sum_probs=64.1

Q ss_pred             cccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCcc----------HhHHHHHHHHHhhcCCCeEEEEcceechHHHHH
Q 026362          112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGS----------IYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII  181 (240)
Q Consensus       112 g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGs----------V~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslI  181 (240)
                      |.++.+.+.... +++.|-... .=||...+|+||-.          +..+-.+.+++.....|..|++.|-|.+.|.+.
T Consensus       380 g~l~~~~a~Kaa-rfi~lc~~~-~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a  457 (569)
T PLN02820        380 GILFTESALKGA-HFIELCAQR-GIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG  457 (569)
T ss_pred             CccCHHHHHHHH-HHHHHHHhc-CCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence            447776655443 344343322 45889999999944          445666777777888999999999999999988


Q ss_pred             HcCC--CCCcEEeccCceEeeecCCC
Q 026362          182 LAGG--EKGMRYAMPNARIMLNQPQS  205 (240)
Q Consensus       182 l~aG--~kgkR~a~PnA~iMIHqP~~  205 (240)
                      +++.  ...-.++.|+|++-+=.|.+
T Consensus       458 M~g~~~~~d~~~awp~A~i~vmg~e~  483 (569)
T PLN02820        458 MCGRAYSPNFLFMWPNARIGVMGGAQ  483 (569)
T ss_pred             hcCcCCCCCEEEECCCCeEEecCHHH
Confidence            8754  22236677888887765553

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=88.65  E-value=3.3  Score=38.27  Aligned_cols=93  Identities=17%  Similarity=0.166  Sum_probs=66.0

Q ss_pred             EEccccChhHHHHHHHHHHhhhcc----CCCCCceEEEeCCCccHhHHHH-------HHHHHhhcC--CCeEEEEcce--
Q 026362          109 FIGQPINSMVAQRAISQLVTLATI----DEDADILMYLNCPGGSIYSVLA-------IYDCMSWIK--PKVGTVCFGV--  173 (240)
Q Consensus       109 fl~g~Id~~~a~~~iaqLl~L~~~----d~~~~I~l~INSPGGsV~aGla-------Iyd~L~~~~--~~V~Tvv~G~--  173 (240)
                      |.+|-+.+.....+...+. +..+    ...-++.+.+.|.|+.+.++..       |+..+...+  .|+.+++.|-  
T Consensus        70 ~~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~g  148 (274)
T TIGR03133        70 FQGGSVGEVHGAKIVGALR-LAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVG  148 (274)
T ss_pred             ccCcCCCHHHHHHHHHHHH-HHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence            5678888877776666544 4433    1124799999999998876442       333333333  6999999999  


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      |++.++++.+.++-  .++.|++++.+--|.
T Consensus       149 c~GG~a~~a~l~D~--vim~~~a~i~~aGP~  177 (274)
T TIGR03133       149 CFGGMGIAAGLCSY--LIMTEEGRLGLSGPE  177 (274)
T ss_pred             cchHHHHHHhcCCE--EEEeCCcEEeccCHH
Confidence            78888888888886  778899999887664

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=87.56  E-value=3.1  Score=39.04  Aligned_cols=93  Identities=17%  Similarity=0.190  Sum_probs=67.2

Q ss_pred             EEccccChhHHHHHHHHHHhhhccCC----CCCceEEEeCCCccHhHHH-------HHHHHHhhcC--CCeEEEEcce--
Q 026362          109 FIGQPINSMVAQRAISQLVTLATIDE----DADILMYLNCPGGSIYSVL-------AIYDCMSWIK--PKVGTVCFGV--  173 (240)
Q Consensus       109 fl~g~Id~~~a~~~iaqLl~L~~~d~----~~~I~l~INSPGGsV~aGl-------aIyd~L~~~~--~~V~Tvv~G~--  173 (240)
                      |.+|-+.+.....+...+. +..+..    --++.+++.|.|+.+.++.       .|+..+...+  .|+.+++.|-  
T Consensus        79 f~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~g  157 (301)
T PRK07189         79 FMGGSVGEVHGAKLAGALE-LAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVG  157 (301)
T ss_pred             ccCcCcCHHHHHHHHHHHH-HHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence            5688888877777766544 443332    1588999999998876543       2343433333  6999999998  


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      |+..++++.+.+|-  .++.+++++.+--|.
T Consensus       158 c~GG~a~~a~l~D~--iIm~~~a~iglaGP~  186 (301)
T PRK07189        158 CFGGMGIAAALCSY--LIVSEEGRLGLSGPE  186 (301)
T ss_pred             CcHHHHHHHhcCCE--EEEECCcEEeccCHH
Confidence            88888888888886  778899999887664

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=85.74  E-value=4  Score=42.40  Aligned_cols=86  Identities=10%  Similarity=0.063  Sum_probs=61.9

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce--EEEeCC------CccHhH----------------HHHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL--MYLNCP------GGSIYS----------------VLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~--l~INSP------GGsV~a----------------GlaIyd~L~~~~~~V~Tv  169 (240)
                      ++.++...+.+.|..++.   +.++.  |.+...      |+|+..                ...+++.|..++.||...
T Consensus        38 l~~~~~~~L~~al~~~~~---d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa  114 (737)
T TIGR02441        38 LSKELFAEFKEVMNELWT---NEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAA  114 (737)
T ss_pred             CCHHHHHHHHHHHHHHhh---CCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            667777888888877764   23454  334443      344431                224677788899999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCc--eEeeecCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNA--RIMLNQPQ  204 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA--~iMIHqP~  204 (240)
                      +.|.|.+.|.-|.++||-  |++.+++  +|-+....
T Consensus       115 v~G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~  149 (737)
T TIGR02441       115 ISGSCLGGGLELALACHY--RIATKDRKTLLGLPEVM  149 (737)
T ss_pred             ECCEeecHHHHHHHhCCE--EEEcCCCCCeEecchhh
Confidence            999999999999999997  9999875  56554443

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=85.08  E-value=5.9  Score=36.80  Aligned_cols=92  Identities=18%  Similarity=0.234  Sum_probs=66.2

Q ss_pred             EEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHH-------H---HhhcCCCeEEEEcceechHH
Q 026362          109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYD-------C---MSWIKPKVGTVCFGVAASQA  178 (240)
Q Consensus       109 fl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd-------~---L~~~~~~V~Tvv~G~AaS~a  178 (240)
                      |.+|-++...++.+...+..- .+. .-|+.++.+|+|.-+.+|...+.       .   +.....|..+++.|-+...+
T Consensus       131 f~gGSmg~~~geKi~r~~e~A-~~~-~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~  208 (285)
T TIGR00515       131 FMGGSMGSVVGEKFVRAIEKA-LED-NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGV  208 (285)
T ss_pred             ccCCCccHHHHHHHHHHHHHH-HHc-CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHH
Confidence            567888888888777655533 333 45888999999988777653321       2   22335789999999998887


Q ss_pred             HHHHc-CCCCCcEEeccCceEeeecCC
Q 026362          179 AIILA-GGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       179 slIl~-aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      +..++ .|+-  .++.|+|++.+--|.
T Consensus       209 aas~a~~~D~--iia~p~A~ig~aGpr  233 (285)
T TIGR00515       209 SASFAMLGDL--NIAEPKALIGFAGPR  233 (285)
T ss_pred             HHHHHhCCCE--EEEECCeEEEcCCHH
Confidence            77664 7775  788899999886664

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=85.07  E-value=15  Score=37.14  Aligned_cols=90  Identities=13%  Similarity=0.113  Sum_probs=66.2

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCCC--------ccHh-----------HH----HHHHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCPG--------GSIY-----------SV----LAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG--------GsV~-----------aG----laIyd~L~~~~~~V~Tvv  170 (240)
                      ++.++...+.+.+..++..|  .+|.+.|=+.+        +|+.           ..    ..+++.|..++.||.+.+
T Consensus       295 l~~~~~~~L~~a~~~~~~~d--~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav  372 (546)
T TIGR03222       295 WPLKLARELDDAILHLRTNE--LDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI  372 (546)
T ss_pred             CCHHHHHHHHHHHHHHhhCC--CCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            67788888888888886433  35665553333        3331           10    125667888899999999


Q ss_pred             -cceechHH-HHHHcCCCCCcEEe-------ccCceEeeecCCCCC
Q 026362          171 -FGVAASQA-AIILAGGEKGMRYA-------MPNARIMLNQPQSGS  207 (240)
Q Consensus       171 -~G~AaS~a-slIl~aG~kgkR~a-------~PnA~iMIHqP~~g~  207 (240)
                       .|.|...| .-|.++||-  |++       .++++|.+-...-|.
T Consensus       373 ~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl  416 (546)
T TIGR03222       373 EPGSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGL  416 (546)
T ss_pred             CCCeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCcccccc
Confidence             79999999 999999997  999       799999887766553

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=84.47  E-value=7.6  Score=36.15  Aligned_cols=92  Identities=17%  Similarity=0.211  Sum_probs=65.6

Q ss_pred             EEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHH-------HHH---HhhcCCCeEEEEcceechHH
Q 026362          109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI-------YDC---MSWIKPKVGTVCFGVAASQA  178 (240)
Q Consensus       109 fl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaI-------yd~---L~~~~~~V~Tvv~G~AaS~a  178 (240)
                      |.+|-++...++.+..-+. +..+. .-|+..+..|+|....+|...       +..   +.....|..+++.|-+...+
T Consensus       132 f~gGS~g~~~~eKi~r~~e-~A~~~-~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~  209 (292)
T PRK05654        132 FMGGSMGSVVGEKIVRAVE-RAIEE-KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV  209 (292)
T ss_pred             cccCCccHHHHHHHHHHHH-HHHHc-CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHH
Confidence            5678899988888776554 43333 458888889999887776532       222   22335789999999998887


Q ss_pred             HHHHcC-CCCCcEEeccCceEeeecCC
Q 026362          179 AIILAG-GEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       179 slIl~a-G~kgkR~a~PnA~iMIHqP~  204 (240)
                      +..++. ++-  .++.|+|++.+=-|.
T Consensus       210 aas~a~~~D~--iia~p~A~ig~aGpr  234 (292)
T PRK05654        210 SASFAMLGDI--IIAEPKALIGFAGPR  234 (292)
T ss_pred             HHHHHHcCCE--EEEecCcEEEecCHH
Confidence            766554 775  788899988886664

>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins

Probab=80.11  E-value=13  Score=33.81  Aligned_cols=69  Identities=19%  Similarity=0.225  Sum_probs=47.2

Q ss_pred             ccCCCCCceEEEeCCCcc---HhHHHH----------HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCce
Q 026362          131 TIDEDADILMYLNCPGGS---IYSVLA----------IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR  197 (240)
Q Consensus       131 ~~d~~~~I~l~INSPGGs---V~aGla----------Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~  197 (240)
                      ...++.+|.+.+.+||--   -.+-+-          -|+.-|....||.+.+.|.|.|.|.+- -+-.-.+-+++|  -
T Consensus        60 ~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA-~GlqA~rl~AL~--g  136 (234)
T PF06833_consen   60 RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLA-HGLQANRLIALP--G  136 (234)
T ss_pred             hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHH-HHHHhcchhcCC--C
Confidence            345688999999999933   333333          456666777899999999999987543 222222357888  5


Q ss_pred             Eeeec
Q 026362          198 IMLNQ  202 (240)
Q Consensus       198 iMIHq  202 (240)
                      .|||-
T Consensus       137 a~i~v  141 (234)
T PF06833_consen  137 AMIHV  141 (234)
T ss_pred             Ceeec
Confidence            66773

Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
3kti_A	199	Structure Of Clpp In Complex With Adep1 Length = 19		2e-29
3tt6_A	196	Structure Of Clpp From Bacillus Subtilis In Compres		2e-29
3tt7_A	197	Structure Of Clpp From Bacillus Subtilis In Complex		2e-29
3ktg_A	199	Structure Of Clpp From Bacillus Subtilis In Monocli		3e-29
3st9_A	197	Crystal Structure Of Clpp In Heptameric Form From S		7e-27
3qwd_A	203	Crystal Structure Of Clpp From Staphylococcus Aureu		8e-27
3v5i_A	203	The Crystal Structure Of The Mutant Clpp S98a (Stap		2e-26
2f6i_A	215	Crystal Structure Of The Clpp Protease Catalytic Do		2e-25
2zl0_A	196	Crystal Structure Of H.Pylori Clpp Length = 196		4e-25
2zl3_A	196	Crystal Structure Of H.Pylori Clpp S99a Length = 19		1e-24
3mt6_R	207	Structure Of Clpp From Escherichia Coli In Complex		1e-24
1tyf_A	193	The Structure Of Clpp At 2.3 Angstrom Resolution Su		3e-24
1yg8_A	193	The Structure Of A V6a Variant Of Clpp. Length = 19		3e-24
3hln_A	193	Crystal Structure Of Clpp A153c Mutant With Inter-H		4e-24
1tg6_A	277	Crystallography And Mutagenesis Point To An Essenti		3e-23
3p2l_A	201	Crystal Structure Of Atp-Dependent Clp Protease Sub		5e-23
2cby_A	208	Crystal Structure Of The Atp-Dependent Clp Protease		1e-22
2ce3_A	200	Crystal Structure Of The Atp-Dependent Clp Protease		1e-22
2c8t_A	206	The 3.0 A Resolution Structure Of Caseinolytic Clp		1e-22
1y7o_A	218	The Structure Of Streptococcus Pneumoniae A153p Clp		4e-18
3q7h_A	195	Structure Of The Clpp Subunit Of The Atp-Dependent		7e-15
4hnk_A	219	Crystal Structure Of An Enzyme Length = 219		1e-11
4gm2_A	205	The Crystal Structure Of A Peptidase From Plasmodiu		3e-11

>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1 Length = 199

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RII +G  I+  VA   +SQL+ LA  D + +I +Y+N PGGSI + +AIY
Sbjct: 18  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
           D M +IKPKV T+C G+AAS  A +LA GEKG RYA+PN+ +M++QP  G+ G   +++
Sbjct: 78  DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 136

>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed State Length = 196

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RII +G  I+  VA   +SQL+ LA  D + +I +Y+N PGGSI + +AIY
Sbjct: 18  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
           D M +IKPKV T+C G+AAS  A +LA GEKG RYA+PN+ +M++QP  G+ G   +++
Sbjct: 78  DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 136

>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With Dfp Length = 197

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RII +G  I+  VA   +SQL+ LA  D + +I +Y+N PGGSI + +AIY
Sbjct: 19  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
           D M +IKPKV T+C G+AAS  A +LA GEKG RYA+PN+ +M++QP  G+ G   +++
Sbjct: 79  DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137

>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic Crystal Form Length = 199

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RII +G  I+  VA   +SQL+ LA  D + +I +Y+N PGGSI + +AIY
Sbjct: 18  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
           D M +IKPKV T+C G+AAS  A +LA GEKG RYA+PN+ +M++QP  G+ G   +++
Sbjct: 78  DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 136

>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From Staphylococcus Aureus Length = 197

Iteration: 1
 Score =  117 bits (292), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 82/130 (63%)
Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RII +G  I+  VA   +SQL+ L   D + DI +Y+N PGGS+ +  AIY
Sbjct: 21  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D +  IKP V T+C G+AAS  + +LA G KG R+A+PNA +M++QP  G+ G   +++ 
Sbjct: 81  DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 140
Query: 217 QVNEAVISRH 226
             N  + +R 
Sbjct: 141 AANHILKTRE 150

>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus Length = 203

Iteration: 1
 Score =  117 bits (292), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 82/130 (63%)
Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RII +G  I+  VA   +SQL+ L   D + DI +Y+N PGGS+ +  AIY
Sbjct: 19  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D +  IKP V T+C G+AAS  + +LA G KG R+A+PNA +M++QP  G+ G   +++ 
Sbjct: 79  DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 217 QVNEAVISRH 226
             N  + +R 
Sbjct: 139 AANHILKTRE 148

>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a (Staphylococcus Aureus) Length = 203

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 82/130 (63%)
Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RII +G  I+  VA   +SQL+ L   D + DI +Y+N PGGS+ +  AIY
Sbjct: 19  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D +  IKP V T+C G+AA+  + +LA G KG R+A+PNA +M++QP  G+ G   +++ 
Sbjct: 79  DTIQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 217 QVNEAVISRH 226
             N  + +R 
Sbjct: 139 AANHILKTRE 148

>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain From Plasmodium Falciparum Length = 215

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 85/141 (60%), Gaps = 6/141 (4%)
Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+    F+ RII++   IN   A   ISQL+ L  I+ + DI +Y+N PGGSI   LAI 
Sbjct: 31  DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSINEGLAIL 89
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D  ++IK  + T+ FG+ AS A++ILA G+KG R ++PN RIM++QP   + GH +D++ 
Sbjct: 90  DIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEI 149
Query: 217 QVNEAVISRHVSLSFLLLHTL 237
           Q  E +      L  LL H L
Sbjct: 150 QTKEILY-----LKKLLYHYL 165

>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp Length = 196

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 81/124 (65%)
Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RI+ +   IN  VA   ++QL+ L   D + DI +Y+N PGG I S L+IY
Sbjct: 20  DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D M++I+P V T+C G AAS  A +L+ G KG R+++P++RIM++QP  G+ G   D++ 
Sbjct: 80  DTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEI 139
Query: 217 QVNE 220
             NE
Sbjct: 140 ISNE 143

>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a Length = 196

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 81/124 (65%)
Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RI+ +   IN  VA   ++QL+ L   D + DI +Y+N PGG I S L+IY
Sbjct: 20  DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D M++I+P V T+C G AA+  A +L+ G KG R+++P++RIM++QP  G+ G   D++ 
Sbjct: 80  DTMNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEI 139
Query: 217 QVNE 220
             NE
Sbjct: 140 ISNE 143

>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With Adep1 Length = 207

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 8/168 (4%)
Query: 77  SGKNDN----PPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVT 128
           SG+ DN      L+P V+  T  G    D+ S L + R+IF+   +   +A   ++Q++ 
Sbjct: 4   SGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLF 63
Query: 129 LATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKG 188
           L   + + DI +Y+N PGG I + ++IYD M +IKP V T+C G AAS  A +L  G KG
Sbjct: 64  LEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123
Query: 189 MRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
            R+ +PN+R+M++QP  G  G   D++    E +  +      + LHT
Sbjct: 124 KRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHT 171

>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis Length = 193

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 81/141 (57%)
Query: 96  LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
            D+ S L + R+IF+   +   +A   ++Q++ L   + + DI +Y+N PGG I + ++I
Sbjct: 17  FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSI 76
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
           YD M +IKP V T+C G AAS  A +L  G KG R+ +PN+R+M++QP  G  G   D++
Sbjct: 77  YDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIE 136
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
               E +  +      + LHT
Sbjct: 137 IHAREILKVKGRMNELMALHT 157

>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp. Length = 193

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 81/141 (57%)
Query: 96  LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
            D+ S L + R+IF+   +   +A   ++Q++ L   + + DI +Y+N PGG I + ++I
Sbjct: 17  FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSI 76
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
           YD M +IKP V T+C G AAS  A +L  G KG R+ +PN+R+M++QP  G  G   D++
Sbjct: 77  YDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIE 136
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
               E +  +      + LHT
Sbjct: 137 IHAREILKVKGRMNELMALHT 157

>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds Length = 193

Iteration: 1
 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 81/141 (57%)
Query: 96  LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
            D+ S L + R+IF+   +   +A   ++Q++ L   + + DI +Y+N PGG I + ++I
Sbjct: 17  FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSI 76
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
           YD M +IKP V T+C G AAS  A +L  G KG R+ +PN+R+M++QP  G  G   D++
Sbjct: 77  YDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIE 136
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
               E +  +      + LHT
Sbjct: 137 IHCREILKVKGRMNELMALHT 157

>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role For The N- Terminus Of Human Mitochondrial Clpp Length = 277

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 82/141 (58%), Gaps = 4/141 (2%)
Query: 84  PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
           PL+P V+   G      D+ S L R RI+ +  PI+  VA   I+QL+ L +      I 
Sbjct: 57  PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIH 116
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
           MY+N PGG + + LAIYD M +I   + T C G AAS  +++LA G  GMR+++PN+RIM
Sbjct: 117 MYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIM 176
Query: 200 LNQPQSGSGGHVEDVKRQVNE 220
           ++QP  G+ G   D+  Q  E
Sbjct: 177 IHQPSGGARGQATDIAIQAEE 197

>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P From Francisella Tularensis Length = 201

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 85  LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
           L+P V+  T GG    D+ S L + RI+F+   +N   A   I+QL+ L + D D DI  
Sbjct: 6   LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYF 65
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
           Y+N PGG + +   +YD   +IKP V T+C G+AAS  +++LAGG KG RY++P+++I +
Sbjct: 66  YINSPGGXVTAGXGVYDTXQFIKPDVSTICIGLAASXGSLLLAGGAKGKRYSLPSSQIXI 125
Query: 201 NQPQSGSGGHVEDVK 215
           +QP  G  G   D++
Sbjct: 126 HQPLGGFRGQASDIE 140

>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 208

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
           L   RIIF+G  +N  +A R  +Q++ LA  D   DI +Y+N PGGSI + +AIYD M  
Sbjct: 24  LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVL 83
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE- 220
               + T   G+AAS    +LA G KG RYA+P+ARI+++QP  G  G   D+  Q  + 
Sbjct: 84  APCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQF 143
Query: 221 AVISRHV 227
           AVI + +
Sbjct: 144 AVIKKEM 150

>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 200

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
           L   RIIF+G  +N  +A R  +Q++ LA  D   DI +Y+N PGGSI + +AIYD M  
Sbjct: 24  LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVL 83
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE- 220
               + T   G+AAS    +LA G KG RYA+P+ARI+++QP  G  G   D+  Q  + 
Sbjct: 84  APCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQF 143
Query: 221 AVISRHV 227
           AVI + +
Sbjct: 144 AVIKKEM 150

>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp Protease 1 From Mycobacterium Tuberculosis Length = 206

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
           L   RIIF+G  +N  +A R  +Q++ LA  D   DI +Y+N PGGSI + +AIYD M  
Sbjct: 25  LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVL 84
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE- 220
               + T   G+AAS    +LA G KG RYA+P+ARI+++QP  G  G   D+  Q  + 
Sbjct: 85  APCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQF 144
Query: 221 AVISRHV 227
           AVI + +
Sbjct: 145 AVIKKEM 151

>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp Length = 218

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 63/107 (58%)
Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RII +  P+    A   I+QL+ L   D   DI +Y+N PGGS+ + LAI 
Sbjct: 37  DIYSRLLKDRIIXLTGPVEDNXANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIV 96
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 203
           D  ++IK  V T+  G AAS   +I + G KG R+ +PNA   ++QP
Sbjct: 97  DTXNFIKADVQTIVXGXAASXGTVIASSGAKGKRFXLPNAEYXIHQP 143

>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii Length = 195

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 74/119 (62%)
Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++R+IF+   +    A  AI+Q + L + + + DI +Y+N PGG++ S  AIY
Sbjct: 20  DIYSRLLKDRVIFLVGQVEDHXANLAIAQXLFLESENPNKDINLYINSPGGAVTSAXAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
           D   ++KP V T+C G AAS  A++LAGG KG R+ +P++ + ++Q   G  G   D++
Sbjct: 80  DTXQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXIHQVLGGYQGQGTDIQ 138

>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme Length = 219

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 96  LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG--------- 146
           +++ S+L   RIIF+  PI   ++++ ISQL+ L    +   I +Y+N  G         
Sbjct: 33  INIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIIN 92
Query: 147 -GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 205
              I  V++I D +++I   V T C G A   A I+ + G+KG R+++ N+   LNQ  S
Sbjct: 93  LNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYS 152

>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium Falciparum Length = 205

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSI 149
           S+L   RIIF+  PI   ++++ ISQL+ L    +   I +Y+N  G            I
Sbjct: 23  SLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI 82
Query: 150 YSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 205
             V++I D +++I   V T C G A   A I+ + G+KG R+++ N+   LNQ  S
Sbjct: 83  TDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYS 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	6e-50
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	6e-50
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	9e-50
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	1e-49
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	3e-48
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	3e-48
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	4e-47
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	4e-13

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A Length = 193

 Score =  161 bits (409), Expect = 6e-50
 Identities = 50/140 (35%), Positives = 81/140 (57%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L + R+IF+   +   +A   ++Q++ L   + + DI +Y+N PGG I + ++IY
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIY 77

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D M +IKP V T+C G AAS  A +L  G KG R+ +PN+R+M++QP  G  G   D++ 
Sbjct: 78  DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEI 137

Query: 217 QVNEAVISRHVSLSFLLLHT 236
              E +  +      + LHT
Sbjct: 138 HAREILKVKGRMNELMALHT 157

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Length = 208

 Score =  161 bits (410), Expect = 6e-50
 Identities = 51/137 (37%), Positives = 73/137 (53%)

Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 159
             L   RIIF+G  +N  +A R  +Q++ LA  D   DI +Y+N PGGSI + +AIYD M
Sbjct: 22  ERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTM 81

Query: 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 219
                 + T   G+AAS    +LA G KG RYA+P+ARI+++QP  G  G   D+  Q  
Sbjct: 82  VLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAE 141

Query: 220 EAVISRHVSLSFLLLHT 236
           +  + +          T
Sbjct: 142 QFAVIKKEMFRLNAEFT 158

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Length = 201

 Score =  160 bits (408), Expect = 9e-50
 Identities = 53/140 (37%), Positives = 83/140 (59%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L + RI+F+   +N   A   I+QL+ L + D D DI  Y+N PGG + + + +Y
Sbjct: 22  DIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVY 81

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D M +IKP V T+C G+AAS  +++LAGG KG RY++P+++IM++QP  G  G   D++ 
Sbjct: 82  DTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEI 141

Query: 217 QVNEAVISRHVSLSFLLLHT 236
                +  +      L  HT
Sbjct: 142 HAKNILRIKDRLNKVLAHHT 161

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A Length = 203

 Score =  160 bits (408), Expect = 1e-49
 Identities = 56/140 (40%), Positives = 84/140 (60%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L ++RII +G  I+  VA   +SQL+ L   D + DI +Y+N PGGS+ +  AIY
Sbjct: 19  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D +  IKP V T+C G+AAS  + +LA G KG R+A+PNA +M++QP  G+ G   +++ 
Sbjct: 79  DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138

Query: 217 QVNEAVISRHVSLSFLLLHT 236
             N  + +R      L   T
Sbjct: 139 AANHILKTREKLNRILSERT 158

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Length = 215

 Score =  157 bits (399), Expect = 3e-48
 Identities = 56/140 (40%), Positives = 85/140 (60%), Gaps = 1/140 (0%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+    F+ RII++   IN   A   ISQL+ L  I+ + DI +Y+N PGGSI   LAI 
Sbjct: 31  DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSINEGLAIL 89

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D  ++IK  + T+ FG+ AS A++ILA G+KG R ++PN RIM++QP   + GH +D++ 
Sbjct: 90  DIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEI 149

Query: 217 QVNEAVISRHVSLSFLLLHT 236
           Q  E +  + +   +L   T
Sbjct: 150 QTKEILYLKKLLYHYLSSFT 169

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Length = 218

 Score =  157 bits (399), Expect = 3e-48
 Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 6/175 (3%)

Query: 68  STEHSYKIISGKNDNPPLMPAVM--TPGG--PLDLSSVLFRNRIIFIGQPINSMVAQRAI 123
           S  H +           ++P V+  T  G    D+ S L ++RII +  P+   +A   I
Sbjct: 4   SHHHHHHSSGLVPRGSHMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVI 63

Query: 124 SQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 183
           +QL+ L   D   DI +Y+N PGGS+ + LAI D M++IK  V T+  G+AAS   +I +
Sbjct: 64  AQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIAS 123

Query: 184 GGEKGMRYAMPNARIMLNQPQSGSGGHVE--DVKRQVNEAVISRHVSLSFLLLHT 236
            G KG R+ +PNA  M++QP  G+GG  +  D+       + +R+     L  ++
Sbjct: 124 SGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENS 178

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Length = 277

 Score =  156 bits (396), Expect = 4e-47
 Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 4/157 (2%)

Query: 84  PLMPAVM--TPGG--PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
           PL+P V+  T  G    D+ S L R RI+ +  PI+  VA   I+QL+ L +      I 
Sbjct: 57  PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIH 116

Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
           MY+N PGG + + LAIYD M +I   + T C G AAS  +++LA G  GMR+++PN+RIM
Sbjct: 117 MYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIM 176

Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
           ++QP  G+ G   D+  Q  E +  +    +    HT
Sbjct: 177 IHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHT 213

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 65.8 bits (160), Expect = 4e-13
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 98  LSSVLFRNRI--IFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
           +S +L +N +    I   I S    +    +      + +A I++ L+ PGG   +++ I
Sbjct: 1   MSPILAKNIVYVAQIKGQITSYTYDQFDRYITIAEQDNAEA-IIIELDTPGGRADAMMNI 59

Query: 156 YDCMSWIKPKVGTVCF---GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVE 212
              +   K  V    +     AAS    I  G         P   I   +P  G   +  
Sbjct: 60  VQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHL--IAMAPGTSIGACRPILGYSQNGS 117

Query: 213 DVKRQ 217
            ++  
Sbjct: 118 IIEAP 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	100.0
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	100.0
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	100.0
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	100.0
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	100.0
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	100.0
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	100.0
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	100.0
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.83
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.55
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.22
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.11
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	97.22
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	97.2
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	97.2
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	97.1
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	97.09
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	97.01
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	96.99
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	96.99
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.9
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	96.8
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	96.77
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	96.76
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	96.75
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	96.72
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	96.72
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	96.6
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	96.6
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	96.5
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	96.49
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	96.44
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	96.44
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	96.43
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	96.36
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	96.33
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	96.29
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	96.21
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	96.2
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	96.19
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	96.19
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	96.16
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	96.08
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	96.06
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	96.05
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	96.02
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	95.97
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	95.94
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	95.93
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	95.92
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	95.92
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	95.92
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	95.86
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	95.85
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	95.79
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	95.78
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	95.75
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	95.73
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	95.7
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	95.65
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	95.63
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	95.61
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	95.58
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	95.57
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	95.52
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	95.51
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	95.43
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	95.42
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	95.28
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	95.23
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	95.19
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	95.17
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	95.14
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	95.11
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	95.08
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	95.06
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	94.97
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	94.9
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	94.85
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	94.84
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	94.68
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	94.61
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	94.56
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	94.38
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	94.35
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	94.32
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	94.27
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	94.21
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	94.18
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	94.18
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	93.96
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	93.93
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	93.71
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	93.7
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	93.69
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	93.19
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	93.18
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	93.18
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	91.57
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	91.56
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	90.94
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	90.09
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	89.19
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	86.57

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=100.00  E-value=3.1e-48  Score=337.60  Aligned_cols=145  Identities=29%  Similarity=0.455  Sum_probs=139.8

Q ss_pred             CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCC
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKP  164 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~  164 (240)
                      |+|||++||++|||||+++||+++++.|++||++|+.++++++|+|||||||          |+|++|++|||+|+++++
T Consensus        18 ~~di~s~Ll~~Riifl~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~~~~~   97 (205)
T 4gm2_A           18 YFQGPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISS   97 (205)
T ss_dssp             ----CHHHHTTTEEEECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHHHSSS
T ss_pred             CcCHHHHHhcCCEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCC
Confidence            8999999999999999999999999999999999999999999999999999          999999999999999999


Q ss_pred             CeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          165 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS-GGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       165 ~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~-~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +|+|+|.|+|||||++|+++|++|||+++|||++|||||++++ .|++.|+++++++|+++++.+.++|+++||++
T Consensus        98 ~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~  173 (205)
T 4gm2_A           98 DVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKD  173 (205)
T ss_dssp             CEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999998 99999999999999999999999999999997

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=100.00  E-value=3.5e-43  Score=304.34  Aligned_cols=155  Identities=38%  Similarity=0.708  Sum_probs=147.3

Q ss_pred             ccceeeC--CCC--CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHh
Q 026362           85 LMPAVMT--PGG--PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS  160 (240)
Q Consensus        85 ~~p~~~~--~~~--~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~  160 (240)
                      ++|.|+.  +.|  .+|+|++||++||||++|+||+++++.++++|++++.+++.++|.||||||||++++|++|||+|+
T Consensus         6 ~~p~~~~~~~~~~~~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~   85 (201)
T 3p2l_A            6 LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQ   85 (201)
T ss_dssp             CSSEECCC-----CCEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHH
T ss_pred             cCCeeeeeCCCCCcccCHHHHhhCCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHH
Confidence            5677763  333  699999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             hcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       161 ~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      .++.+|+|+|.|+|||+|++|+++|++|||++.||+++|||||+++..|++.|+++++++++++++.+.++|+++||++
T Consensus        86 ~~~~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~  164 (201)
T 3p2l_A           86 FIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQD  164 (201)
T ss_dssp             HSSSCEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HhCCCeEEEEcCEehhHHHHHHHcCccCCEEEcCCCeEEEeccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999987

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=100.00  E-value=5.1e-43  Score=303.69  Aligned_cols=155  Identities=39%  Similarity=0.680  Sum_probs=147.1

Q ss_pred             ccceeeC--CCC--CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHh
Q 026362           85 LMPAVMT--PGG--PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS  160 (240)
Q Consensus        85 ~~p~~~~--~~~--~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~  160 (240)
                      ++|.|+.  +.|  .+|||++||++|||||+|+||+++++.++++|++++.+++.++|.|+||||||++++|++|||+|+
T Consensus         3 ~~p~~~~~~~~~~~~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~~~~~I~~~i~   82 (203)
T 3qwd_A            3 LIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQ   82 (203)
T ss_dssp             CCCEEECC-----CEEEHHHHHHHTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHH
T ss_pred             CCCeeeeecCCCCcccCHHHHHhcCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4677773  333  699999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             hcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       161 ~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      .++.+|+|+|.|+|||+|++|+++|++|+|++.||+++|||||+++..|++.|+++++++++++++.+.++|+++||++
T Consensus        83 ~~~~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~  161 (203)
T 3qwd_A           83 HIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQS  161 (203)
T ss_dssp             HSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCC
T ss_pred             HhcCCcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999987

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=100.00  E-value=9.9e-41  Score=301.82  Aligned_cols=158  Identities=37%  Similarity=0.611  Sum_probs=146.8

Q ss_pred             CCCccceeeCC--CC--CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHH
Q 026362           82 NPPLMPAVMTP--GG--PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYD  157 (240)
Q Consensus        82 ~~~~~p~~~~~--~~--~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd  157 (240)
                      +.+++|.+++.  .|  ++|+|++||++||||++|+|++++++.++++|++|+.+++.++|.||||||||+|++|++|||
T Consensus        55 ~~~~~p~~~~~~~~~~~~~di~s~ll~erII~l~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV~ag~aIyd  134 (277)
T 1tg6_A           55 ALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYD  134 (277)
T ss_dssp             --CCCCBCC---------CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHH
T ss_pred             cCCCCCeeeccCCCCcccccHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHH
Confidence            44467777642  33  899999999999999999999999999999999999988899999999999999999999999


Q ss_pred             HHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 026362          158 CMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTL  237 (240)
Q Consensus       158 ~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG  237 (240)
                      +|++++++|+|+|.|+|||||++|+++|++|||++.||+++|||||+++..|++.|+++++++++++++.+.++|+++||
T Consensus       135 ~I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG  214 (277)
T 1tg6_A          135 TMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTK  214 (277)
T ss_dssp             HHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026362          238 ND  239 (240)
Q Consensus       238 ~~  239 (240)
                      ++
T Consensus       215 ~~  216 (277)
T 1tg6_A          215 QS  216 (277)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=100.00  E-value=7.7e-39  Score=273.46  Aligned_cols=145  Identities=34%  Similarity=0.659  Sum_probs=142.0

Q ss_pred             CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      ++|+|++|+++||||++|+|++.+++.++++|++++.+++.++|.|+||||||+++++++|||+|+.++.||+|+|.|+|
T Consensus        16 ~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~a~~~I~~~i~~~~~pV~~~v~g~A   95 (193)
T 1yg6_A           16 SFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQA   95 (193)
T ss_dssp             CCBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred             hhhHHHHHhcCCEEEEcCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhcCCCEEEEEeeeH
Confidence            79999999999999999999999999999999999988888999999999999999999999999999999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      ||+|++|+++|++|||++.|++++|+|||+++..|++.|++.++++++++++.+.++|+++||++
T Consensus        96 aS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~  160 (193)
T 1yg6_A           96 ASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQS  160 (193)
T ss_dssp             ETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999998899999999999999999999999999999986

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=100.00  E-value=2.5e-38  Score=275.88  Aligned_cols=157  Identities=36%  Similarity=0.565  Sum_probs=136.4

Q ss_pred             CCCccceeeCCCCCCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhh
Q 026362           82 NPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW  161 (240)
Q Consensus        82 ~~~~~p~~~~~~~~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~  161 (240)
                      |-+.-|.--.++.++|+|++|+++|+||++|+|++.+++.++++|++++.+++ ++|.|+||||||+|+++++|||+|+.
T Consensus        16 ~~~~~~~~~~~~~~~d~~~~l~~~riI~l~G~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPGGsv~a~~~I~~~i~~   94 (215)
T 2f6i_A           16 NLYFQGHMDIKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINH-NDIKIYINSPGGSINEGLAILDIFNY   94 (215)
T ss_dssp             ------CCCCSCSSHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECCBCHHHHHHHHHHHHH
T ss_pred             ccccCCCCccccccccHHHHHhCceEEEEccEECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCCCCHHHHHHHHHHHHh
Confidence            33333332334568999999999999999999999999999999999998887 99999999999999999999999999


Q ss_pred             cCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       162 ~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      ++.||+|+|.|+|||+|++|+++|++|||++.|++++|+|||+++..|++.|+..+++++.++++.+.++|+++||++
T Consensus        95 ~~~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~  172 (215)
T 2f6i_A           95 IKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQT  172 (215)
T ss_dssp             SSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cCCCEEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999986

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=100.00  E-value=2.6e-38  Score=275.74  Aligned_cols=159  Identities=33%  Similarity=0.575  Sum_probs=135.2

Q ss_pred             CCCCccceeeC--CCC--CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHH
Q 026362           81 DNPPLMPAVMT--PGG--PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY  156 (240)
Q Consensus        81 ~~~~~~p~~~~--~~~--~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIy  156 (240)
                      .+.+++|.|+.  ++|  ++|+|++|+++|||||+|+||+++++.++++|++++.+++.++|.|+||||||++++|++||
T Consensus        17 ~~~~~~p~~~~~~~~~~~~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I~   96 (218)
T 1y7o_A           17 RGSHMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIV   96 (218)
T ss_dssp             -----CCEECC-------CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHH
T ss_pred             cCCCCCceeeecCCCCcchhhHHHHhhcCCEEEEeCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHH
Confidence            34556888763  333  89999999999999999999999999999999999998888999999999999999999999


Q ss_pred             HHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026362          157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS--GGHVEDVKRQVNEAVISRHVSLSFLLL  234 (240)
Q Consensus       157 d~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~--~G~a~di~~~a~eL~~~r~~i~~iyA~  234 (240)
                      |+|+.++.||.|+|.|+|+|+|++|+++|++|||++.|+++||+|||+++.  .|++.|+++++++++++++.+.++|++
T Consensus        97 ~~i~~~~~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~  176 (218)
T 1y7o_A           97 DTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAE  176 (218)
T ss_dssp             HHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEecccccccCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887  899999999999999999999999999


Q ss_pred             HhCCC
Q 026362          235 HTLND  239 (240)
Q Consensus       235 ~TG~~  239 (240)
                      ++|++
T Consensus       177 ~~G~~  181 (218)
T 1y7o_A          177 NSGQS  181 (218)
T ss_dssp             HHTCC
T ss_pred             HhCCC
Confidence            99986

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=100.00  E-value=4.3e-37  Score=265.85  Aligned_cols=145  Identities=35%  Similarity=0.560  Sum_probs=132.4

Q ss_pred             CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      ++|+|++|+++|+||++|+|++.+++.++++|.+++.+++.++|.|+||||||+++++++|||+|+.++.||+|+|.|+|
T Consensus        17 ~~~~~~~l~~~rii~l~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~~~I~~~i~~~~~pV~~~v~g~A   96 (208)
T 2cby_A           17 TDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMA   96 (208)
T ss_dssp             HHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHCSSCEEEEEEEEE
T ss_pred             hhhHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEECcEe
Confidence            78999999999999999999999999999999999988888999999999999999999999999999999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      ||+|++|+++|+++||++.|++++|+|||+++..|++.|++..+++++++++.+.++|+++||++
T Consensus        97 aS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~  161 (208)
T 2cby_A           97 ASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQP  161 (208)
T ss_dssp             ETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            99999999999999999999999999999998899999999999999999999999999999986

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.83  E-value=1.1e-20  Score=166.34  Aligned_cols=127  Identities=17%  Similarity=0.129  Sum_probs=108.5

Q ss_pred             EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEE---cceechHHHHHHc
Q 026362          107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVC---FGVAASQAAIILA  183 (240)
Q Consensus       107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv---~G~AaS~aslIl~  183 (240)
                      +|++.|.|++++++.+.++|..++. ++.+.|.|+||||||++.++..||++|+.++.||.++|   .|.|+|+|++|++
T Consensus        12 vI~i~g~I~~~~~~~l~~~l~~a~~-~~~~~Ivl~inspGG~v~~~~~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~   90 (230)
T 3viv_A           12 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL   90 (230)
T ss_dssp             EEEEESCBCHHHHHHHHHHHHHHHH-TTCSEEEEEEEBSCEEHHHHHHHHHHHHTCSSCEEEEECSTTCEEETHHHHHHH
T ss_pred             EEEEeCEECHHHHHHHHHHHHHHhc-CCCCEEEEEEeCCCcCHHHHHHHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHH
Confidence            5789999999999999999998875 45789999999999999999999999999999999999   9999999999999


Q ss_pred             CCCCCcEEeccCceEeeecCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          184 GGEKGMRYAMPNARIMLNQPQS--GSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       184 aG~kgkR~a~PnA~iMIHqP~~--g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +|++  |++.|+++||+|+|..  +..|++.++  ..+.+..++.. .+.|++++|++
T Consensus        91 a~d~--~~a~p~a~ig~~~p~~~~~~~G~~~~~--~~k~~~~~~~~-~~~la~~~Gr~  143 (230)
T 3viv_A           91 GSHL--IAMAPGTSIGACRPILGYSQNGSIIEA--PPAITNYFIAY-IKSLAQESGRN  143 (230)
T ss_dssp             TSSE--EEECTTCEEECCCEEEEECTTSCEEEC--CHHHHHHHHHH-HHHHHHHTTCC
T ss_pred             hcCc--eeECCCCEEEeccceecCCCCCCchHH--HHHHHHHHHHH-HHHHHHHhCcC
Confidence            9996  9999999999999984  456765322  23334444443 47799999975

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.55  E-value=1.9e-14  Score=140.91  Aligned_cols=138  Identities=12%  Similarity=-0.015  Sum_probs=99.9

Q ss_pred             CChhhhhccCcEEEEcccc---ChhHHHHHHHHHHhhhccCCCCCceEEEeCCC-ccHhHHHHHHHHHhhcC---CCeEE
Q 026362           96 LDLSSVLFRNRIIFIGQPI---NSMVAQRAISQLVTLATIDEDADILMYLNCPG-GSIYSVLAIYDCMSWIK---PKVGT  168 (240)
Q Consensus        96 ~dl~~~L~~~RIIfl~g~I---d~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG-GsV~aGlaIyd~L~~~~---~~V~T  168 (240)
                      .|.++.++++   |+++++   ++.+++.++++|..+..++..+.|.|+||||| |++.++..||++|+.++   .+|.+
T Consensus        49 ~~~~~~ll~~---~~~~~~~~~~~~~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~~~~~I~~~i~~~k~~gkpvva  125 (593)
T 3bf0_A           49 SQRFSKLSRQ---LLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYA  125 (593)
T ss_dssp             ---------------------CCEEEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CChHHHHHhh---hccCCcccccccCHHHHHHHHHHHHhCCCceEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCeEEE
Confidence            5677778777   677765   46788999999999988777899999999999 99999999999999995   57888


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC------------------CCC--------------HHHHHH
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS------------------GGH--------------VEDVKR  216 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~------------------~G~--------------a~di~~  216 (240)
                      ++. .|+|.|.+|++++++  +++.|++++|+|+|.+..                  .|+              .++.+.
T Consensus       126 ~~~-~aas~~y~lAsaad~--i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms~~~re~  202 (593)
T 3bf0_A          126 VGE-NYSQGQYYLASFANK--IWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREA  202 (593)
T ss_dssp             EES-CEEHHHHHHHTTSSE--EEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCCHHHHHH
T ss_pred             EEc-cchhHHHHHHHhCCE--EEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCCCHHHHHH
Confidence            765 478888889888875  999999999999998641                  121              223344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCC
Q 026362          217 QVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       217 ~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      ..+.++.+.+.+.+.+++++|++
T Consensus       203 ~~~~l~~~~~~~~~~va~~Rg~~  225 (593)
T 3bf0_A          203 DSRWIGELWQNYLNTVAANRQIP  225 (593)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCC
Confidence            55666778888888899999976

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.22  E-value=2.3e-10  Score=100.05  Aligned_cols=119  Identities=18%  Similarity=0.087  Sum_probs=96.0

Q ss_pred             HHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhc----CCCeEEEEcceechHHHHHHcCCCCCcEEecc
Q 026362          119 AQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI----KPKVGTVCFGVAASQAAIILAGGEKGMRYAMP  194 (240)
Q Consensus       119 a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~----~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~P  194 (240)
                      ...+.+.|..++.++..+.|.|.+|||||++.+...|++.|+.+    +.||.+.+.|.|+|.|..|+++|+.  |++.|
T Consensus        31 ~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~--i~a~~  108 (240)
T 3rst_A           31 HRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADK--IFATP  108 (240)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSE--EEECT
T ss_pred             HHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCe--eEECC
Confidence            56888888888876667789999999999999999999999874    6799999999999999999999997  99999


Q ss_pred             CceEeeecC---------------------CCCC---CC------CHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          195 NARIMLNQP---------------------QSGS---GG------HVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       195 nA~iMIHqP---------------------~~g~---~G------~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +++|+++-.                     ..|.   .|      +.++.+...+.++.+.+.+.+.+++..|++
T Consensus       109 ~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~  183 (240)
T 3rst_A          109 ETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMP  183 (240)
T ss_dssp             TCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCeEeccceeeEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999832                     1111   11      234555566677778888888888877654

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.11  E-value=2.4e-10  Score=111.89  Aligned_cols=131  Identities=15%  Similarity=0.016  Sum_probs=101.8

Q ss_pred             EEEEccccChh-------HHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhc---CCCeEEEEcceech
Q 026362          107 IIFIGQPINSM-------VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAAS  176 (240)
Q Consensus       107 IIfl~g~Id~~-------~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~---~~~V~Tvv~G~AaS  176 (240)
                      +|.+.++|...       ..+.+.+.|..++.++..+.|.|.+|||||++.++..|++.++.+   +.||.+.+.|.|+|
T Consensus       305 vI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~~~~~~i~~~i~~l~~~~kPVia~v~g~Aas  384 (593)
T 3bf0_A          305 VVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS  384 (593)
T ss_dssp             EEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET
T ss_pred             EEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCChHH
Confidence            56788887553       378899999988876667889999999999999998899888764   47999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceEeeecCC------------CCC-----------------CCCHHHHHHHHHHHHHHHHH
Q 026362          177 QAAIILAGGEKGMRYAMPNARIMLNQPQ------------SGS-----------------GGHVEDVKRQVNEAVISRHV  227 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~------------~g~-----------------~G~a~di~~~a~eL~~~r~~  227 (240)
                      +|.+|+++|++  |++.|++++....+.            .|.                 .++.++.+...+.++.....
T Consensus       385 gG~~iA~aaD~--iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~~~~~l~~~l~~~~~~  462 (593)
T 3bf0_A          385 GGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKR  462 (593)
T ss_dssp             HHHHTTTTCSE--EEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCE--EEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999996  999999998765321            111                 12345555555666667777


Q ss_pred             HHHHHHHHhCCC
Q 026362          228 SLSFLLLHTLND  239 (240)
Q Consensus       228 i~~iyA~~TG~~  239 (240)
                      +.+.+++..|++
T Consensus       463 f~~~V~~~Rg~~  474 (593)
T 3bf0_A          463 FITLVADARHST  474 (593)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            777777776654

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=97.22  E-value=0.0029  Score=55.11  Aligned_cols=92  Identities=13%  Similarity=0.126  Sum_probs=73.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhHHH-------------HHHHHHhhcCCCeEEEEcceech
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSVL-------------AIYDCMSWIKPKVGTVCFGVAAS  176 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~aGl-------------aIyd~L~~~~~~V~Tvv~G~AaS  176 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |.|+|+..-.             .+++.|..++.||.+.+.|.|.+
T Consensus        29 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  108 (258)
T 2pbp_A           29 LSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALG  108 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTTHHHHHHHTCCSCEEEEECSEEET
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHhCCCCEEEEEcCEEEh
Confidence            788888999999888876544444444444    7889885311             45678888999999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .|.-|+++||-  |++.++++|-+.....|.
T Consensus       109 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl  137 (258)
T 2pbp_A          109 GGFELALSCDL--IVASSAAEFGFPEVNLGV  137 (258)
T ss_dssp             HHHHHHHTSSE--EEEETTCEEECGGGGGTC
T ss_pred             HHHHHHHhCCE--EEEcCCCEEECcccccCC
Confidence            99999999997  999999999887766553

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=97.20  E-value=0.00037  Score=64.25  Aligned_cols=93  Identities=16%  Similarity=0.091  Sum_probs=70.6

Q ss_pred             EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHH----------HHHHHHHhhcCCCeEEEEcceech
Q 026362          107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV----------LAIYDCMSWIKPKVGTVCFGVAAS  176 (240)
Q Consensus       107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aG----------laIyd~L~~~~~~V~Tvv~G~AaS  176 (240)
                      +.+.+|.++++....+..-+. +..+. .-||..++||||..+..+          ..+...+...+.|+.+++.|.|.+
T Consensus       148 ~~~~~G~~~~~~~~Ka~r~~~-~A~~~-~lPlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~G~a~G  225 (339)
T 2f9y_A          148 IRRNFGMPAPEGYRKALRLMQ-MAERF-KMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGS  225 (339)
T ss_dssp             HHTGGGCCCHHHHHHHHHHHH-HHHHT-TCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEH
T ss_pred             hhhhcCCCCHHHHHHHHHHHH-HHhhc-CCCEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcCc
Confidence            344566778887665555444 44333 468999999999776543          345666788889999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceEeeecC
Q 026362          177 QAAIILAGGEKGMRYAMPNARIMLNQP  203 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~iMIHqP  203 (240)
                      .|+.++++||.  +++.|+|+|-+=.|
T Consensus       226 GGa~~~~~~D~--via~p~A~~~v~~P  250 (339)
T 2f9y_A          226 GGALAIGVGDK--VNMLQYSTYSVISP  250 (339)
T ss_dssp             HHHHTTCCCSE--EEECTTCEEESSCH
T ss_pred             HHHHHHhccCe--eeecCCCEEEeecc
Confidence            99999999986  99999999876433

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=97.20  E-value=0.0023  Score=55.70  Aligned_cols=91  Identities=11%  Similarity=0.109  Sum_probs=70.3

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhH--------------HHHHHHHHhhcCCCeEEEEcceec
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS--------------VLAIYDCMSWIKPKVGTVCFGVAA  175 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~a--------------GlaIyd~L~~~~~~V~Tvv~G~Aa  175 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |.|+|+..              ...+++.|..++.||.+.+.|.|.
T Consensus        27 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  106 (257)
T 2ej5_A           27 FTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAA  106 (257)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCEEEEECSEEE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHHHHHHHHHHHHhCCCCEEEEECcccc
Confidence            788888999999888876544444444433    66887642              234566778889999999999999


Q ss_pred             hHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          176 SQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       176 S~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.|.-|+++||-  |++.++++|-+....-|
T Consensus       107 GgG~~lalacD~--ria~~~a~f~~pe~~~G  135 (257)
T 2ej5_A          107 GAGMSLALACDF--RLLSEKASFAPAFIHVG  135 (257)
T ss_dssp             THHHHHHHHSSE--EEEETTCEEECCGGGGT
T ss_pred             chhHHHHHhCCE--EEEcCCCEEeCcccccC
Confidence            999999999996  99999999988666544

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=97.10  E-value=0.003  Score=55.38  Aligned_cols=97  Identities=12%  Similarity=0.118  Sum_probs=74.5

Q ss_pred             EEEccc-----cChhHHHHHHHHHHhhhccCCCCCceEEEe-----CCCccHhHHH-------------------HHHHH
Q 026362          108 IFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSVL-------------------AIYDC  158 (240)
Q Consensus       108 Ifl~g~-----Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN-----SPGGsV~aGl-------------------aIyd~  158 (240)
                      |.|+.|     +|.++...+.+.|..++.++..+-|.|.=+     |.|+|+..-.                   .++..
T Consensus        17 itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (263)
T 3lke_A           17 ITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLE   96 (263)
T ss_dssp             EEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHHHHHHHHHHHHHHHH
Confidence            445555     888899999999988887554444444444     7788875422                   35667


Q ss_pred             HhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          159 MSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       159 L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |..++.||.+.+.|.|.+.|.-|+++||-  |++.++++|-+....-|
T Consensus        97 l~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  142 (263)
T 3lke_A           97 IFTSPKVTVALINGYAYGGGFNMMLACDR--RIALRRAKFLENFHKMG  142 (263)
T ss_dssp             HHTCSSEEEEEECSEEETHHHHGGGGSSE--EEEETTCEEECCHHHHT
T ss_pred             HHhCCCCEEEEECCEeeHHHHHHHHHCCE--EEEcCCCEEeCchHhhC
Confidence            78889999999999999999999999997  99999999887654433

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=97.09  E-value=0.004  Score=53.89  Aligned_cols=92  Identities=13%  Similarity=0.172  Sum_probs=68.8

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-e----CCCccHhH----------------HHHHHHHHhhcCCCeEEEEcc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-N----CPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N----SPGGsV~a----------------GlaIyd~L~~~~~~V~Tvv~G  172 (240)
                      +|.++...+.+.|..++.++..+-|.|.= +    |.|+|+..                ...+++.|..++.||.+.+.|
T Consensus        24 l~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G  103 (250)
T 2a7k_A           24 FSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDG  103 (250)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence            78888899999988887644333222222 1    34677632                124566778889999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .|.+.|.-|.++||-  |++.++++|-+....-|.
T Consensus       104 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  136 (250)
T 2a7k_A          104 YAIGMGFQFALMFDQ--RLMASTANFVMPELKHGI  136 (250)
T ss_dssp             EEETHHHHHHTTSSE--EEEETTCEEECCGGGGTC
T ss_pred             eEeHHHHHHHHhCCE--EEEcCCCEEeCcccccCC
Confidence            999999999999996  999999999886665443

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=97.01  E-value=0.0064  Score=52.67  Aligned_cols=91  Identities=11%  Similarity=0.076  Sum_probs=69.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhH------------------HHHHHHHHhhcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS------------------VLAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~a------------------GlaIyd~L~~~~~~V~Tvv~  171 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |.|+|+..                  ...+++.|..++.||.+.+.
T Consensus        23 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~  102 (253)
T 1uiy_A           23 LSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVN  102 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            778888999999888876544444444434    67888742                  12345567788899999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.|.+.|.-|+++||-  |++.++++|-+....-|
T Consensus       103 G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G  135 (253)
T 1uiy_A          103 GPAVAGGAGLALACDL--VVMDEEARLGYTEVKIG  135 (253)
T ss_dssp             SCEETHHHHHHHTSSE--EEEETTCEEECCHHHHT
T ss_pred             CeeeHHHHHHHHhCCE--EEEcCCcEEeCcccccC
Confidence            9999999999999996  99999999887655444

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=96.99  E-value=0.0018  Score=59.25  Aligned_cols=92  Identities=14%  Similarity=0.055  Sum_probs=70.2

Q ss_pred             EEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHH----------HHHHHHHhhcCCCeEEEEcceechH
Q 026362          108 IFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV----------LAIYDCMSWIKPKVGTVCFGVAASQ  177 (240)
Q Consensus       108 Ifl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aG----------laIyd~L~~~~~~V~Tvv~G~AaS~  177 (240)
                      -+.+|.++++.+..+..-+. +..+. .-||..++||||..+..+          ..+...+...+.|+.+++.|.|.|.
T Consensus       135 ~~~~G~~~~~~~~Ka~r~~~-~A~~~-~~PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GG  212 (327)
T 2f9i_A          135 YRNFGMAHPEGYRKALRLMK-QAEKF-NRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSG  212 (327)
T ss_dssp             HTGGGCCCHHHHHHHHHHHH-HHHHT-TCCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHH
T ss_pred             hhhcCCCCHHHHHHHHHHHH-HHhhc-CCCEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEECCcChH
Confidence            34567788887666555444 44333 468999999999876543          3356667888899999999999999


Q ss_pred             HHHHHcCCCCCcEEeccCceEeeecC
Q 026362          178 AAIILAGGEKGMRYAMPNARIMLNQP  203 (240)
Q Consensus       178 aslIl~aG~kgkR~a~PnA~iMIHqP  203 (240)
                      |+.++++||.  +++.|+|+|-+=.|
T Consensus       213 Ga~~~~~~D~--via~~~A~~~v~~p  236 (327)
T 2f9i_A          213 GALGIGIANK--VLMLENSTYSVISP  236 (327)
T ss_dssp             HHHTTCCCSE--EEEETTCBCBSSCH
T ss_pred             HHHHHHCCCE--EEEcCCceEeecCc
Confidence            9999999996  99999999876433

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=96.99  E-value=0.0073  Score=52.68  Aligned_cols=93  Identities=13%  Similarity=0.115  Sum_probs=70.5

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEEEe-----CCCccHhH---------------HHHHHHHHhhcCCCeEEEEcc
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS---------------VLAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN-----SPGGsV~a---------------GlaIyd~L~~~~~~V~Tvv~G  172 (240)
                      .+|.++...+.+.|..++.++..+-|.|.-+     |.|+|+..               ...+++.|..++.||.+.+.|
T Consensus        27 al~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  106 (260)
T 1sg4_A           27 SLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAING  106 (260)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence            3778888899998888876544444444444     44777642               234567788889999999999


Q ss_pred             eechHHHHHHcCCCCCcEEec--cCceEeeecCCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAM--PNARIMLNQPQSGS  207 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~--PnA~iMIHqP~~g~  207 (240)
                      .|.+.|.-|+++||-  |++.  ++++|-+-...-|.
T Consensus       107 ~a~GgG~~lalacD~--~ia~~~~~a~f~~pe~~~Gl  141 (260)
T 1sg4_A          107 ACPAGGCLVALTCDY--RILADNPRYCIGLNETQLGI  141 (260)
T ss_dssp             EBCHHHHHHHTTSSE--EEEECCTTCCBSCCGGGGTC
T ss_pred             eeehHHHHHHHhCCE--EEEecCCCCEEeCchhhhCC
Confidence            999999999999997  9999  89998876655554

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.90  E-value=0.0052  Score=60.04  Aligned_cols=91  Identities=18%  Similarity=0.171  Sum_probs=73.9

Q ss_pred             cccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHH
Q 026362          112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII  181 (240)
Q Consensus       112 g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslI  181 (240)
                      |.++.+.+..... ++.+-.. -.-||..++|+||          |-+.++-.+.+.+...+.|+.|++.|-|+|.|.+.
T Consensus       361 G~l~~~~a~Kaar-~i~~a~~-~~iPlv~lvDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~a  438 (548)
T 2bzr_A          361 GCLDINASEKAAR-FVRTCDC-FNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCV  438 (548)
T ss_dssp             GCBCHHHHHHHHH-HHHHHHH-TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHHHHh-cCCCEEEEeeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHH
Confidence            5688877665554 3334332 2568999999999          88899999999999999999999999999999988


Q ss_pred             HcC----CCCCcEEeccCceEeeecCCCC
Q 026362          182 LAG----GEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       182 l~a----G~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +++    ++  ..++.|||++.+-.|.+.
T Consensus       439 m~~~~~~~d--~~~awp~a~i~Vmgpega  465 (548)
T 2bzr_A          439 MGSKDMGCD--VNLAWPTAQIAVMGASGA  465 (548)
T ss_dssp             TTCGGGTCS--EEEECTTCEEESSCHHHH
T ss_pred             hccccCCCC--EEEEcCCCEEEecCHHHH
Confidence            775    45  478999999999888754

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=96.80  E-value=0.0091  Score=52.33  Aligned_cols=91  Identities=9%  Similarity=0.131  Sum_probs=67.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhHH--------------------------HHHHHHHhhcC
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV--------------------------LAIYDCMSWIK  163 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~aG--------------------------laIyd~L~~~~  163 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |.|+|+..-                          ..+++.|..++
T Consensus        28 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (275)
T 1dci_A           28 MNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCP  107 (275)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHhCC
Confidence            788888999999888876443332322211    568887431                          12455677889


Q ss_pred             CCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          164 PKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       164 ~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .||.+.+.|.|.+.|.-|+++||-  |++.++++|.+....-|
T Consensus       108 kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  148 (275)
T 1dci_A          108 KPVIAAIHGGCIGGGVDLISACDI--RYCTQDAFFQVKEVDVG  148 (275)
T ss_dssp             SCEEEEECSEEETHHHHHHTTSSE--EEEETTCEEECCGGGGT
T ss_pred             CCEEEEECCeeeHHHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence            999999999999999999999996  99999999987665433

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=96.77  E-value=0.0087  Score=53.22  Aligned_cols=92  Identities=11%  Similarity=0.075  Sum_probs=69.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhH----------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~a----------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |.|+|+..                ...+++.|..++.||.+.+.|.
T Consensus        57 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  136 (287)
T 2vx2_A           57 LSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGL  136 (287)
T ss_dssp             CCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            788888889888888775443333333222    56776531                2345677888899999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      |.+.|.-|+++||-  |++.++++|-+....-|.
T Consensus       137 a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl  168 (287)
T 2vx2_A          137 ATAAGCQLVASCDI--AVASDKSSFATPGVNVGL  168 (287)
T ss_dssp             EETHHHHHHHHSSE--EEEETTCEEECCGGGGTC
T ss_pred             EEcHHHHHHHhCCE--EEEcCCCEEECchhhhCC
Confidence            99999999999997  999999999887666543

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=96.76  E-value=0.011  Score=51.21  Aligned_cols=91  Identities=7%  Similarity=-0.050  Sum_probs=69.6

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhHHH----------HHHHHHhhcCCCeEEEEcceechHHH
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSVL----------AIYDCMSWIKPKVGTVCFGVAASQAA  179 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~aGl----------aIyd~L~~~~~~V~Tvv~G~AaS~as  179 (240)
                      +|.++..++.+.|..++.++..+-|.|.=+    |.|+|+..-.          .++..|..++.||.+.+.|.|.+.|.
T Consensus        27 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~  106 (243)
T 2q35_A           27 FSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGGL  106 (243)
T ss_dssp             SCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTCCCCCCCHHHHHTCCSCEEEEECSEEETHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchhhHHHHHHHHHHhCCCCEEEEEcCccccchH
Confidence            788888999999888876443333333322    6788886532          24677888899999999999999999


Q ss_pred             HHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          180 IILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       180 lIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      -|.++||-  |++.++++|-+.....|
T Consensus       107 ~lalacD~--ria~~~a~f~~pe~~~G  131 (243)
T 2q35_A          107 LLGLYADF--VVFSQESVYATNFMKYG  131 (243)
T ss_dssp             HHHHTSSE--EEEESSSEEECCHHHHT
T ss_pred             HHHHhCCE--EEEeCCCEEECCccccC
Confidence            99999997  99999999877554433

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=96.75  E-value=0.0075  Score=52.66  Aligned_cols=92  Identities=10%  Similarity=0.004  Sum_probs=70.3

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEEE-e----CCCccHhH--------------H-HHHHHHHhhcCCCeEEEEcc
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMYL-N----CPGGSIYS--------------V-LAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N----SPGGsV~a--------------G-laIyd~L~~~~~~V~Tvv~G  172 (240)
                      .+|.++...+.+.|..++.++..+-|.|.- +    |.|+|+..              . ..+++.|..++.||.+.+.|
T Consensus        31 al~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  110 (265)
T 2ppy_A           31 SYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEG  110 (265)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEEEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhccchhHHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence            377888889999888887644333333333 1    34788752              1 35677888889999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCc-eEeeecCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNA-RIMLNQPQSG  206 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA-~iMIHqP~~g  206 (240)
                      .|.+.|.-|+++||-  |++.+++ +|-+....-|
T Consensus       111 ~a~GgG~~lalacD~--ria~~~ag~f~~pe~~~G  143 (265)
T 2ppy_A          111 HTVGGGLEMALACDL--RFMGDEAGKIGLPEVSLG  143 (265)
T ss_dssp             EEETHHHHHHHTSSE--EEEETTCCCEECCGGGGT
T ss_pred             EEeeHHHHHHHhCCE--EEEeCCCCEEECcccccC
Confidence            999999999999996  9999999 9888665544

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=96.72  E-value=0.0077  Score=52.94  Aligned_cols=93  Identities=12%  Similarity=0.123  Sum_probs=70.8

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEEEeCC-----CccHhH---------------HHHHHHHHhhcCCCeEEEEcc
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMYLNCP-----GGSIYS---------------VLAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP-----GGsV~a---------------GlaIyd~L~~~~~~V~Tvv~G  172 (240)
                      .+|.++...+...|..++.++..+-|.|.=+.|     |+|+..               ...+++.|..++.||.+.+.|
T Consensus        35 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  114 (272)
T 1hzd_A           35 SLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDG  114 (272)
T ss_dssp             CBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEESE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence            377888889999988887654434343433333     677642               234567788889999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .|.+.|.-|+++||-  |++.++++|-+.....|.
T Consensus       115 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  147 (272)
T 1hzd_A          115 LALGGGLELALACDI--RVAASSAKMGLVETKLAI  147 (272)
T ss_dssp             EEETHHHHHHHHSSE--EEEETTCEEECCGGGGTC
T ss_pred             eEEecHHHHHHhCCE--EEEcCCCEEeCchhccCC
Confidence            999999999999996  999999999887766553

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=96.72  E-value=0.0095  Score=52.38  Aligned_cols=91  Identities=16%  Similarity=0.126  Sum_probs=70.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCC-----CccHhH----------------HHHHHHHHhhcCCCeEEEEcc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCP-----GGSIYS----------------VLAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP-----GGsV~a----------------GlaIyd~L~~~~~~V~Tvv~G  172 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+.+     |+|+..                ...+++.|..++.||.+.+.|
T Consensus        37 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  116 (273)
T 2uzf_A           37 FTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKG  116 (273)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CCSSSCCCTHHHHHHHHHHSSSCEEEEECE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchhhhHHHhhHHHHHHHHHhCCCCEEEEECC
Confidence            78888899999988887654444444443333     676632                225667788889999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.+.|.-|+++||-  |++.++++|-+....-|
T Consensus       117 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  148 (273)
T 2uzf_A          117 YAVGGGNVLNVVCDL--TIAADNAIFGQTGPKVG  148 (273)
T ss_dssp             EEETHHHHHHHHSSE--EEEETTCEEECCGGGTT
T ss_pred             EEeehhHHHHHhCCE--EEEcCCCEEECchhhhC
Confidence            999999999999996  99999999988766554

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=96.60  E-value=0.039  Score=48.30  Aligned_cols=92  Identities=11%  Similarity=0.062  Sum_probs=69.6

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhHH-----------------HHHHHHHhhcCCCeEEEEcc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV-----------------LAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~aG-----------------laIyd~L~~~~~~V~Tvv~G  172 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |-|+|+..-                 ..++..|..++.||.+.+.|
T Consensus        29 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  108 (266)
T 3fdu_A           29 LYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKG  108 (266)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHHHHHCCSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            788888999999888876443332222211    345665432                 34667888999999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .|.+.|.-|+++||-  |++.++++|-+.....|.
T Consensus       109 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  141 (266)
T 3fdu_A          109 VAIGIGVTILLQADL--VFADNTALFQIPFVSLGL  141 (266)
T ss_dssp             EEETHHHHGGGGCSE--EEECTTCEEECCTTTTTC
T ss_pred             EEehHHHHHHHhCCE--EEEcCCCEEECchhhhCC
Confidence            999999999999997  999999999887766554

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=96.60  E-value=0.017  Score=50.40  Aligned_cols=91  Identities=14%  Similarity=0.108  Sum_probs=68.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE----eCCCccHhH----------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I----NSPGGsV~a----------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++...+.+.|..++.++..+-|.|.=    =|.|+|+..                ...+++.|..++.||.+.+.|.
T Consensus        29 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  108 (261)
T 3pea_A           29 MSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGA  108 (261)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence            78888889999888887644333222221    144666531                2346778889999999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.+.|.-|+++||-  |++.++++|.+....-|
T Consensus       109 a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  139 (261)
T 3pea_A          109 ALGGGLEFAMSCHM--RFATESAKLGLPELTLG  139 (261)
T ss_dssp             EETHHHHHHHHSSE--EEEETTCEEECCGGGGT
T ss_pred             eehHHHHHHHhCCE--EEEcCCCEEECcccccC
Confidence            99999999999997  99999999888666655

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=96.50  E-value=0.0053  Score=53.58  Aligned_cols=91  Identities=16%  Similarity=0.102  Sum_probs=68.6

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhHHH-------------HHHHHHhhcCCCeEEEEcceech
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSVL-------------AIYDCMSWIKPKVGTVCFGVAAS  176 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~aGl-------------aIyd~L~~~~~~V~Tvv~G~AaS  176 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |.|+|+..-.             ..++.|..++.||.+.+.|.|.+
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  110 (260)
T 1mj3_A           31 LCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALG  110 (260)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEECSEEET
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchHHHHHHHHHHHHHHHhCCCCEEEEECCEEEe
Confidence            788889999999888876543333333322    5788875411             12445667788999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          177 QAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.-|+++||-  |++.++++|-+.....|
T Consensus       111 gG~~lalacD~--ria~~~a~f~~pe~~~G  138 (260)
T 1mj3_A          111 GGCELAMMCDI--IYAGEKAQFGQPEILLG  138 (260)
T ss_dssp             HHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             HHHHHHHhCCE--EEEcCCCEEeCcccccC
Confidence            99999999996  99999999988766644

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=96.49  E-value=0.0067  Score=53.16  Aligned_cols=91  Identities=14%  Similarity=0.126  Sum_probs=68.8

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceE----EEeCCCccHhHH-------------HHHHHHHhhcCCCeEEEEcceech
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILM----YLNCPGGSIYSV-------------LAIYDCMSWIKPKVGTVCFGVAAS  176 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l----~INSPGGsV~aG-------------laIyd~L~~~~~~V~Tvv~G~AaS  176 (240)
                      +|.++...+.+.|..++.++..+-|.|    ..-|.|+|+..-             ..+++.|..++.||.+.+.|.|.+
T Consensus        34 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  113 (263)
T 3moy_A           34 LNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAGYALG  113 (263)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHHHTTTTHHHHHHTTCCSCEEEEECBEEET
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchhHHHHHHHHHHHHHHhCCCCEEEEECCEeeh
Confidence            778888899998888876443332222    123446666432             236788889999999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          177 QAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.-|+++||-  |++.++++|-+....-|
T Consensus       114 gG~~lalacD~--~ia~~~a~f~~pe~~~G  141 (263)
T 3moy_A          114 GGCELAMLCDL--VIAADTARFGQPEITLG  141 (263)
T ss_dssp             HHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             HHHHHHHHCCE--EEecCCCEEeCcccccC
Confidence            99999999997  99999999987665544

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=96.44  E-value=0.03  Score=48.55  Aligned_cols=93  Identities=14%  Similarity=0.127  Sum_probs=70.7

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceE----EEeCCCccHhHH----------------HHHHHHHhhcCCCeEEEEcc
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILM----YLNCPGGSIYSV----------------LAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l----~INSPGGsV~aG----------------laIyd~L~~~~~~V~Tvv~G  172 (240)
                      .+|.++...+.+.|..++.++..+-|.|    -.=|.|+|+..-                ..++..|..++.||.+.+.|
T Consensus        29 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  108 (256)
T 3qmj_A           29 AFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNG  108 (256)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            3788888999999888876443333333    134567776532                34677888999999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .|.+.|.-|+++||-  |++.++++|-+....-|.
T Consensus       109 ~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl  141 (256)
T 3qmj_A          109 LGVGIGATILGYADL--AFMSSTARLKCPFTSLGV  141 (256)
T ss_dssp             EEETHHHHGGGGCSE--EEEETTCEEECCGGGC--
T ss_pred             eehhHHHHHHHhCCE--EEEeCCCEEECcccccCC
Confidence            999999999999997  999999999887666553

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=96.44  E-value=0.024  Score=49.53  Aligned_cols=91  Identities=15%  Similarity=0.106  Sum_probs=68.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhH--------------------HHHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS--------------------VLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~a--------------------GlaIyd~L~~~~~~V~Tv  169 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |.|+|+..                    ...+++.|..++.||.+.
T Consensus        27 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  106 (269)
T 1nzy_A           27 LSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAA  106 (269)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            778888999999888876443333333322    66777631                    123456677888999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.|.|.+.|.-|+++||-  |++.++++|-+.....|
T Consensus       107 v~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G  141 (269)
T 1nzy_A          107 INGVAAGGGLGISLASDM--AICADSAKFVCAWHTIG  141 (269)
T ss_dssp             ECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHT
T ss_pred             ECCeeecHHHHHHHhCCE--EEecCCCEEeCcccccC
Confidence            999999999999999996  99999999887554433

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=96.36  E-value=0.03  Score=48.83  Aligned_cols=90  Identities=10%  Similarity=0.034  Sum_probs=67.3

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHh-----H------------HHHHHHHHhhcCCCeEEEEc
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIY-----S------------VLAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~-----a------------GlaIyd~L~~~~~~V~Tvv~  171 (240)
                      .+|.++...+.+.|..++.++..+-|.|.=+    |.|+|+.     .            ...++..|..++.||.+.+.
T Consensus        33 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  112 (264)
T 1wz8_A           33 AMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVE  112 (264)
T ss_dssp             CBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccccccccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence            3788888899998888876443333333323    6788873     1            11345567788899999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      |.|.+.|.-|+++||-  |++.++++|-+....
T Consensus       113 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~  143 (264)
T 1wz8_A          113 KVAVGAGLALALAADI--AVVGKGTRLLDGHLR  143 (264)
T ss_dssp             SEEETHHHHHHHHSSE--EEEETTCEEECCHHH
T ss_pred             CeeechhHHHHHhCCE--EEecCCCEEeCchhh
Confidence            9999999999999996  999999998875544

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=96.33  E-value=0.023  Score=50.11  Aligned_cols=89  Identities=18%  Similarity=0.198  Sum_probs=67.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe------CCCccHhH-------------------HHHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN------CPGGSIYS-------------------VLAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN------SPGGsV~a-------------------GlaIyd~L~~~~~~V~T  168 (240)
                      +|.++...+.+.|..++.++.   +-|.|-      |.|+|+..                   ...++..|..++.||.+
T Consensus        50 l~~~~~~~L~~al~~~~~d~~---v~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  126 (280)
T 2f6q_A           50 INTEMYHEIMRALKAASKDDS---IITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA  126 (280)
T ss_dssp             BCHHHHHHHHHHHHHHHHSSC---SEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHhhCCC---EEEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            788888999998888876432   234443      66777642                   12355677888999999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .+.|.|.+.|.-|+++||-  |++.++++|-+-...-|.
T Consensus       127 av~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl  163 (280)
T 2f6q_A          127 VVNGPAVGISVTLLGLFDA--VYASDRATFHTPFSHLGQ  163 (280)
T ss_dssp             EECSCEETHHHHGGGGCSE--EEEETTCEEECCTGGGTC
T ss_pred             EECCeeehHHHHHHHhCCE--EEECCCcEEECchHhhCC
Confidence            9999999999999999996  999999999886665553

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=96.29  E-value=0.034  Score=49.21  Aligned_cols=98  Identities=13%  Similarity=0.207  Sum_probs=71.6

Q ss_pred             EEEccc----cChhHHHHHHHHHHhhhccCCCCCceEE----EeCCCccHhH---------------HHHHHHHHhhcCC
Q 026362          108 IFIGQP----INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYS---------------VLAIYDCMSWIKP  164 (240)
Q Consensus       108 Ifl~g~----Id~~~a~~~iaqLl~L~~~d~~~~I~l~----INSPGGsV~a---------------GlaIyd~L~~~~~  164 (240)
                      |.|+.|    +|.++...+.+.|..++.++..+-|.|.    .=|.|+|+..               ...++..|..++.
T Consensus        37 ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  116 (277)
T 4di1_A           37 LVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPK  116 (277)
T ss_dssp             EEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHHHHHHHHHHHHHHHhCCC
Confidence            445544    7888889999998888764432222221    1233555532               2346778889999


Q ss_pred             CeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          165 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       165 ~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      ||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|.
T Consensus       117 PvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl  157 (277)
T 4di1_A          117 PTVAAVTGYALGAGLTLALAADW--RVSGDNVKFGATEILAGL  157 (277)
T ss_dssp             CEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECGGGGGTC
T ss_pred             CEEEEECCeEehhHHHHHHhCCE--EEEcCCCEEECcccccCC
Confidence            99999999999999999999997  999999999887666553

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=96.21  E-value=0.026  Score=49.29  Aligned_cols=91  Identities=11%  Similarity=0.127  Sum_probs=67.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE----EeCCCccHhH--------------------HHHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYS--------------------VLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~----INSPGGsV~a--------------------GlaIyd~L~~~~~~V~Tv  169 (240)
                      +|.++...+.+.|..++.++..+-|.|.    .=|.|+|+..                    ...++..|..++.||.+.
T Consensus        35 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  114 (267)
T 3oc7_A           35 LSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAA  114 (267)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CHHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            7888899999999888765433333331    2345666532                    123566777889999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.|.|.+.|.-|+++||-  |++.++++|.+-...-|
T Consensus       115 v~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  149 (267)
T 3oc7_A          115 IDGHVRAGGFGLVGACDI--AVAGPRSSFALTEARIG  149 (267)
T ss_dssp             ECSEEETTHHHHHHHSSE--EEECTTCEEECCGGGGT
T ss_pred             EcCeecccchHHHHHCCE--EEEcCCCEEeCcccccC
Confidence            999999999999999997  99999999987655544

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=96.20  E-value=0.03  Score=48.93  Aligned_cols=92  Identities=10%  Similarity=0.090  Sum_probs=68.2

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeC-----CCccHhH---------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNC-----PGGSIYS---------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INS-----PGGsV~a---------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++...+...|..++.++..+-|.|.=+.     -|+|+..               ...+++.|..++.||.+.+.|.
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  112 (265)
T 3kqf_A           33 LSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGI  112 (265)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence            7788888999998888764332222222121     2455532               3456778889999999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      |.+.|.-|+++||-  |++.++++|-+.....|.
T Consensus       113 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  144 (265)
T 3kqf_A          113 ALGGGTELSLACDF--RIAAESASLGLTETTLAI  144 (265)
T ss_dssp             EETHHHHHHHHSSE--EEEETTCEEECCGGGGTC
T ss_pred             eehHHHHHHHhCCE--EEEcCCcEEECcccccCc
Confidence            99999999999997  999999999887666553

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=96.19  E-value=0.043  Score=48.17  Aligned_cols=91  Identities=14%  Similarity=0.083  Sum_probs=67.4

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhH------------------HHHHHHHHhhcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS------------------VLAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~a------------------GlaIyd~L~~~~~~V~Tvv~  171 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |-|+|+..                  ...++..|..++.||.+.+.
T Consensus        28 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  107 (268)
T 3i47_A           28 FDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQ  107 (268)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            788889999999888876443332222111    34566532                  12356678888999999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.|.+.|.-|+++||-  |++.++++|.+-....|
T Consensus       108 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  140 (268)
T 3i47_A          108 GAAFGGGAGLAAACDI--AIASTSARFCFSEVKLG  140 (268)
T ss_dssp             SEEETHHHHHHHHSSE--EEEETTCEEECCGGGGT
T ss_pred             CEEEhHhHHHHHhCCE--EEEcCCCEEECcccccC
Confidence            9999999999999997  99999999887665544

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=96.19  E-value=0.022  Score=50.65  Aligned_cols=91  Identities=13%  Similarity=0.079  Sum_probs=64.8

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE----EeCCCccHh----------------------HHHHHHHHHhhcCCCeE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIY----------------------SVLAIYDCMSWIKPKVG  167 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~----INSPGGsV~----------------------aGlaIyd~L~~~~~~V~  167 (240)
                      +|.++...+.+.|..++.++..+-|.|.    .=|-|+|+.                      ....++..|..++.||.
T Consensus        48 l~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  127 (290)
T 3sll_A           48 MAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVI  127 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred             CCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            6788888888888888754332222221    113345542                      12346777888999999


Q ss_pred             EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|
T Consensus       128 Aav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~G  164 (290)
T 3sll_A          128 AAINGAAIGGGLCLALACDV--RVASQDAYFRAAGINNG  164 (290)
T ss_dssp             EEECSEEETHHHHHHHHSSE--EEEETTCEEECTTTTTT
T ss_pred             EEECCeehHHHHHHHHHCCE--EEEeCCCEEECchhccC
Confidence            99999999999999999997  99999999987665544

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=96.16  E-value=0.029  Score=48.97  Aligned_cols=93  Identities=17%  Similarity=0.190  Sum_probs=68.4

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE----EeCCCccHhH---------------------HHHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYS---------------------VLAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~----INSPGGsV~a---------------------GlaIyd~L~~~~~~V~T  168 (240)
                      +|.++...+.+.|..++.++..+-|.|.    .=|.|+|+..                     ...++..|..++.||.+
T Consensus        30 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  109 (263)
T 3l3s_A           30 LSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIA  109 (263)
T ss_dssp             CCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            7888888999988888764332222221    1234555421                     23567778889999999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG  208 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~  208 (240)
                      .+.|.|.+.|.-|+++||-  |++.++++|-+-...-|..
T Consensus       110 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~  147 (263)
T 3l3s_A          110 LVEGIATAAGLQLMAACDL--AYASPAARFCLPGVQNGGF  147 (263)
T ss_dssp             EESSEEETHHHHHHHHSSE--EEECTTCEEECCTTTTTSC
T ss_pred             EECCEEEHHHHHHHHHCCE--EEecCCCEEeCchhccCCC
Confidence            9999999999999999997  9999999998866665543

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=96.08  E-value=0.035  Score=48.88  Aligned_cols=91  Identities=14%  Similarity=0.181  Sum_probs=66.2

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE----EeCCCccHh----------HHHHHHHHHhhcCCCeEEEEcceechHHH
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIY----------SVLAIYDCMSWIKPKVGTVCFGVAASQAA  179 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~----INSPGGsV~----------aGlaIyd~L~~~~~~V~Tvv~G~AaS~as  179 (240)
                      +|.++...+.+.|..++. |..+-|.|.    .=|.|+|+.          ....++..|..++.||.+.+.|.|.+.|.
T Consensus        45 l~~~~~~~L~~al~~~~~-d~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~  123 (264)
T 3he2_A           45 LNSQLVEELTQAIRKAGD-GSARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGL  123 (264)
T ss_dssp             BCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHH
T ss_pred             CCHHHHHHHHHHHHHHhh-CCceEEEEECCCCCccCCcCCccchhhHHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchh
Confidence            778888888888877764 222222221    124566654          24557788889999999999999999999


Q ss_pred             HHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          180 IILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       180 lIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      -|+++||-  |++.++++|.+-....|.
T Consensus       124 ~lalacD~--ria~~~a~f~~pe~~~Gl  149 (264)
T 3he2_A          124 QLAMQCDL--RVVAPDAFFQFPTSKYGL  149 (264)
T ss_dssp             HHHHHSSE--EEECTTCEEECTHHHHTC
T ss_pred             HHHHhCCE--EEEcCCCEEECcccccCc
Confidence            99999997  999999998876555444

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=96.06  E-value=0.014  Score=50.79  Aligned_cols=89  Identities=11%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHh---------HHHHHHHHHhhcCCCeEEEEcceechHH
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIY---------SVLAIYDCMSWIKPKVGTVCFGVAASQA  178 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~---------aGlaIyd~L~~~~~~V~Tvv~G~AaS~a  178 (240)
                      +|.++...+.+.|..++.++..+-  |.|.+-      |+|+.         ....++..|..++.||.+.+.|.|.+.|
T Consensus        30 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG  107 (255)
T 3p5m_A           30 VDTPMLEELSVHIRDAEADESVRA--VLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVGFG  107 (255)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCCE--EEEEESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHH
T ss_pred             CCHHHHHHHHHHHHHHhhCCCeEE--EEEECCCCCccCCCChhhhcchHHHHHHHHHHHHHHhCCCCEEEEeCCeehhhH
Confidence            788888999999888876443322  223333      34432         2346788899999999999999999999


Q ss_pred             HHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          179 AIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       179 slIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .-|+++||-  |++.++++|.+-...-|
T Consensus       108 ~~lalacD~--~ia~~~a~f~~pe~~~G  133 (255)
T 3p5m_A          108 CSLALACDL--VVAAPASYFQLAFTRVG  133 (255)
T ss_dssp             HHHHHHSSE--EEECTTCEEECGGGGGT
T ss_pred             HHHHHHCCE--EEEcCCcEEeCcccccC
Confidence            999999997  99999999888665544

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=96.05  E-value=0.034  Score=48.38  Aligned_cols=91  Identities=20%  Similarity=0.151  Sum_probs=67.8

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEEEe-----CCCccHhHH-------------------HHHHHHHhhcCCCeEE
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV-------------------LAIYDCMSWIKPKVGT  168 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN-----SPGGsV~aG-------------------laIyd~L~~~~~~V~T  168 (240)
                      .+|.++...+.+.|..++.++ .+ +.|.-.     |.|+|+..-                   ..++..|..++.||.+
T Consensus        29 al~~~~~~~L~~al~~~~~d~-~r-~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  106 (261)
T 2gtr_A           29 SLNPEVMREVQSALSTAAADD-SK-LVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIV  106 (261)
T ss_dssp             EECHHHHHHHHHHHHHHHHSS-CS-CEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCC-CE-EEEEecCCCccccccCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            377888888998888887643 33 322222     456776421                   2345567788899999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .+.|.|.+.|.-|+++||-  |++.++++|-+-...-|.
T Consensus       107 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  143 (261)
T 2gtr_A          107 AVNGPAIGLGASILPLCDV--VWANEKAWFQTPYTTFGQ  143 (261)
T ss_dssp             EECSCEETHHHHTGGGSSE--EEEETTCEEECCTTTTTC
T ss_pred             EECCeEeeHHHHHHHhCCE--EEEcCCCEEeCchhccCC
Confidence            9999999999999999997  999999999887666553

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=96.02  E-value=0.04  Score=48.43  Aligned_cols=93  Identities=17%  Similarity=0.163  Sum_probs=69.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE----eCCCccHhH-------------------HHHHHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYS-------------------VLAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I----NSPGGsV~a-------------------GlaIyd~L~~~~~~V~Tvv  170 (240)
                      +|.++...+.+.|..++.++..+-|.|.=    =|.|+|+..                   ...++..|..++.||.+.+
T Consensus        41 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  120 (279)
T 3g64_A           41 LTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAAL  120 (279)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            78888999999998887644333222221    133566531                   1346667888999999999


Q ss_pred             cceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCC
Q 026362          171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG  208 (240)
Q Consensus       171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~  208 (240)
                      .|.|.+.|.-|+++||-  |++.++++|.+....-|..
T Consensus       121 ~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~  156 (279)
T 3g64_A          121 HGVAAGAGAVLALAADF--RVADPSTRFAFLFTRVGLS  156 (279)
T ss_dssp             CSEEETHHHHHHHHSSE--EEECTTCEEECCGGGGTCC
T ss_pred             cCeeccccHHHHHhCCE--EEEeCCCEEeCchhhcCCC
Confidence            99999999999999997  9999999998766655543

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=95.97  E-value=0.025  Score=49.89  Aligned_cols=89  Identities=13%  Similarity=0.073  Sum_probs=66.3

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-----eCC-----CccHhH----------------HHHHHHHHhhcCCCeE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-----NCP-----GGSIYS----------------VLAIYDCMSWIKPKVG  167 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-----NSP-----GGsV~a----------------GlaIyd~L~~~~~~V~  167 (240)
                      +|.++...+.+.|..++.++..+-|.|.=     ..+     |+|+..                ...+++.|..++.||.
T Consensus        34 l~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  113 (275)
T 4eml_A           34 FRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVI  113 (275)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--------------CCCHHHHHHHHHHSSSEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccchhhHHHHHHHHHHHHHHhCCCCEE
Confidence            78888899999888887644333333222     122     455421                2356778889999999


Q ss_pred             EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      +.+.|.|.+.|.-|+++||-  |++.++++|.+-...
T Consensus       114 Aav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~  148 (275)
T 4eml_A          114 ALVAGYAIGGGHVLHLVCDL--TIAADNAIFGQTGPK  148 (275)
T ss_dssp             EEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHH
T ss_pred             EEECCeeehHHHHHHHhCCE--EEEcCCCEEECcccc
Confidence            99999999999999999997  999999999875444

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=95.94  E-value=0.052  Score=46.89  Aligned_cols=89  Identities=17%  Similarity=0.122  Sum_probs=68.9

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-eCC------CccHh--------------HHHHHHHHHhhcCCCeEEEEcc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-NCP------GGSIY--------------SVLAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSP------GGsV~--------------aGlaIyd~L~~~~~~V~Tvv~G  172 (240)
                      +|.++...+.+.|..++.++.   +.+.| .+-      |+|+.              ....+++.|..++.||.+.+.|
T Consensus        24 l~~~m~~~L~~al~~~~~d~~---vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  100 (254)
T 3hrx_A           24 ITGELLDALYAALKEGEEDRE---VRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNG  100 (254)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTT---CCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            888999999999988876443   33333 222      44442              2345788889999999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .|...|.-|+++||-  |++.++++|.+-...-|.
T Consensus       101 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl  133 (254)
T 3hrx_A          101 VAAGAGMSLALWGDL--RLAAVGASFTTAFVRIGL  133 (254)
T ss_dssp             EEETHHHHHHTTCSE--EEEETTCEEECCGGGGTC
T ss_pred             Eeeehhhhhhhccce--eeEcCCCEEEchhhCcCc
Confidence            999999999999997  999999999886665553

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=95.93  E-value=0.024  Score=49.37  Aligned_cols=86  Identities=10%  Similarity=0.094  Sum_probs=63.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-eCC-----CccHhH--------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-NCP-----GGSIYS--------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSP-----GGsV~a--------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++...+.+.|..++.++ .+-|.|.= +.|     |+|+..              ...+++.|..++.||.+.+.|.
T Consensus        28 l~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  106 (261)
T 1ef8_A           28 LSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGS  106 (261)
T ss_dssp             CCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchhHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            67788888888888776533 33222222 222     666532              3456778888999999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeec
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQ  202 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHq  202 (240)
                      |.+.|.-|+++||-  |++.++++|-+..
T Consensus       107 a~GgG~~lalacD~--ria~~~a~f~~pe  133 (261)
T 1ef8_A          107 VWGGAFEMIMSSDL--IIAASTSTFSMTP  133 (261)
T ss_dssp             EETHHHHHHHHSSE--EEEETTCEEECCH
T ss_pred             EEeHhHHHHHhCCE--EEecCCCEEeCch
Confidence            99999999999996  9999999987644

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=95.92  E-value=0.028  Score=49.61  Aligned_cols=87  Identities=15%  Similarity=0.036  Sum_probs=65.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE----EeCCCccHhH-----------------HHHHHHHHhhcCCCeEEEEcc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYS-----------------VLAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~----INSPGGsV~a-----------------GlaIyd~L~~~~~~V~Tvv~G  172 (240)
                      +|.++...+.+.|..++.++..+-|.|.    .=|.|+|+..                 ...++..|..++.||.+.+.|
T Consensus        52 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  131 (276)
T 3rrv_A           52 VNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNG  131 (276)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECc
Confidence            7888889999998888764433322221    1345666642                 124567788899999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeec
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQ  202 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHq  202 (240)
                      .|.+.|.-|+++||-  |++.++++|-+-.
T Consensus       132 ~a~GgG~~LalacD~--ria~~~a~f~~pe  159 (276)
T 3rrv_A          132 PAVGLGCSLVALSDI--VYIAENAYLADPH  159 (276)
T ss_dssp             CEETHHHHHHHTSSE--EEEETTCEEECCH
T ss_pred             eeeHHHHHHHHHCCE--EEEeCCCEEECch
Confidence            999999999999997  9999999988644

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=95.92  E-value=0.037  Score=50.50  Aligned_cols=92  Identities=17%  Similarity=0.165  Sum_probs=70.4

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe-----------CCCccHhH--------------------------HHHHH
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN-----------CPGGSIYS--------------------------VLAIY  156 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN-----------SPGGsV~a--------------------------GlaIy  156 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+           |-|+|+..                          ...++
T Consensus        81 l~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (334)
T 3t8b_A           81 FRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQ  160 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC----------------------CCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccccccccchhhhHHHHHHHHHHHHH
Confidence            788889999999888876544343333322           33666532                          12356


Q ss_pred             HHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEec-cCceEeeecCCCCC
Q 026362          157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM-PNARIMLNQPQSGS  207 (240)
Q Consensus       157 d~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~-PnA~iMIHqP~~g~  207 (240)
                      ..|+.++.||.+.+.|.|.+.|.-|+++||-  |++. ++++|.+-...-|.
T Consensus       161 ~~i~~~~kPvIAaV~G~A~GgG~~LalacD~--riAs~~~A~f~~pe~~lGl  210 (334)
T 3t8b_A          161 RLIRFMPKVVICLVNGWAAGGGHSLHVVCDL--TLASREYARFKQTDADVGS  210 (334)
T ss_dssp             HHHHHSSSEEEEEECSEEETHHHHHHHHSSE--EEEETTTCEEECCCTTCSS
T ss_pred             HHHHhCCCCEEEEECCccccCcchhHhhCCE--EEEeCCCcEEECcccccCC
Confidence            7788999999999999999999999999997  9999 99999987777553

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=95.92  E-value=0.051  Score=49.20  Aligned_cols=47  Identities=11%  Similarity=0.080  Sum_probs=41.5

Q ss_pred             HHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       156 yd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      +..|..++.||.+.+.|.|.+.|.-|+++||-  |++.++++|-+-...
T Consensus       150 ~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--rias~~a~f~~pe~~  196 (333)
T 3njd_A          150 FASLMHCDKPTVVKIHGYCVAGGTDIALHADQ--VIAAADAKIGYPPMR  196 (333)
T ss_dssp             HTHHHHSSSCEEEEECSEEETHHHHHHTTSSE--EEECTTCEEECGGGG
T ss_pred             HHHHHhCCCCEEEEECCEEeHHHHHHHHhCCE--EEECCCCeeechhhc
Confidence            45677789999999999999999999999997  999999998886554

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=95.86  E-value=0.03  Score=49.73  Aligned_cols=93  Identities=14%  Similarity=0.143  Sum_probs=68.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE----EeCCCccHhH----------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~----INSPGGsV~a----------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++...+.+.|..++.++..+-|.|.    .=|-|+|+..                ...++..|..++.||.+.+.|.
T Consensus        50 l~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  129 (286)
T 3myb_A           50 LSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGI  129 (286)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCe
Confidence            7788888999988888764333322221    1234566532                2346677888899999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG  208 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~  208 (240)
                      |.+.|.-|+++||-  |++.++++|.+-...-|..
T Consensus       130 a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~  162 (286)
T 3myb_A          130 ATAAGCQLVAMCDL--AVATRDARFAVSGINVGLF  162 (286)
T ss_dssp             EETHHHHHHHHSSE--EEEETTCEEECGGGGGTCC
T ss_pred             ehHHHHHHHHhCCE--EEEcCCCEEECcccccCCC
Confidence            99999999999997  9999999998766665543

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=95.85  E-value=0.032  Score=49.63  Aligned_cols=91  Identities=16%  Similarity=0.118  Sum_probs=68.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCC-----CccHhH-----------------HHHHHHHHhhcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCP-----GGSIYS-----------------VLAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP-----GGsV~a-----------------GlaIyd~L~~~~~~V~Tvv~  171 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+.+     |+|+..                 ...+++.|..++.||.+.+.
T Consensus        52 l~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~  131 (289)
T 3t89_A           52 FRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVA  131 (289)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------CTHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence            78888889999888887644333333322233     555521                 23467788899999999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.|.+.|.-|+++||-  |++.++++|-+-.+..|
T Consensus       132 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  164 (289)
T 3t89_A          132 GYSIGGGHVLHMMCDL--TIAADNAIFGQTGPKVG  164 (289)
T ss_dssp             SEEETHHHHHHHHSSE--EEEETTCEEECCHHHHT
T ss_pred             CEeehHHHHHHHhCCE--EEEeCCCEEeccccccC
Confidence            9999999999999997  99999999988554433

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=95.79  E-value=0.021  Score=50.55  Aligned_cols=92  Identities=15%  Similarity=0.112  Sum_probs=67.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE----EeCCCccHhHHH-------------HHHHHHhhcCCCeEEEEcceech
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYSVL-------------AIYDCMSWIKPKVGTVCFGVAAS  176 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~----INSPGGsV~aGl-------------aIyd~L~~~~~~V~Tvv~G~AaS  176 (240)
                      +|.++...+.+.|..++.++..+-|.|.    .=|.|+|+..-.             ..+..|..++.||.+.+.|.|.+
T Consensus        49 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  128 (278)
T 3h81_A           49 LNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALG  128 (278)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTTGGGHHHHTCCSCEEEEECBEEET
T ss_pred             CCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhhHHHHHHHHHHHHHHhCCCCEEEEECCeeeh
Confidence            7888889999988888764333222221    234456653211             11456788899999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .|.-|+++||-  |++.++++|-+....-|.
T Consensus       129 gG~~LalacD~--ria~~~a~f~~pe~~lGl  157 (278)
T 3h81_A          129 GGCELAMMCDV--LIAADTAKFGQPEIKLGV  157 (278)
T ss_dssp             HHHHHHHHSSE--EEEETTCEEECGGGGGTC
T ss_pred             HHHHHHHHCCE--EEEcCCCEEECchhhcCc
Confidence            99999999997  999999999887666553

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=95.78  E-value=0.065  Score=47.09  Aligned_cols=91  Identities=10%  Similarity=-0.004  Sum_probs=66.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE----eCCCccHhHH--------------------------HHHHHHHhhcC
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV--------------------------LAIYDCMSWIK  163 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I----NSPGGsV~aG--------------------------laIyd~L~~~~  163 (240)
                      +|.++...+...|..++.++..+-|.|.=    =|.|+|+..-                          ..+++.|..++
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  112 (280)
T 1pjh_A           33 LEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS  112 (280)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            78888889999888887644332222221    1557776421                          13456677889


Q ss_pred             CCeEEEEcceechHHHHHHcCCCCCcEEec-cCceEeeecCCCC
Q 026362          164 PKVGTVCFGVAASQAAIILAGGEKGMRYAM-PNARIMLNQPQSG  206 (240)
Q Consensus       164 ~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~-PnA~iMIHqP~~g  206 (240)
                      .||.+.+.|.|.+.|.-|+++||-  |++. ++++|-+.....|
T Consensus       113 kPvIAav~G~a~GgG~~LalacD~--~ia~~~~a~f~~pe~~lG  154 (280)
T 1pjh_A          113 KVLICCLNGPAIGLSAALVALCDI--VYSINDKVYLLYPFANLG  154 (280)
T ss_dssp             SEEEEEECSCEEHHHHHHHHHSSE--EEESSTTCEEECCHHHHT
T ss_pred             CCEEEEECCeeeeHHHHHHHHCCE--EEEeCCCCEEeCchhhcC
Confidence            999999999999999999999997  9999 9999887554433

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=95.75  E-value=0.018  Score=50.63  Aligned_cols=91  Identities=11%  Similarity=0.060  Sum_probs=65.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhHHHH--------------------HHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSVLA--------------------IYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~aGla--------------------Iyd~L~~~~~~V~Tv  169 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |.|+|+..-..                    +++.|..++.||.+.
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  112 (276)
T 2j5i_A           33 MSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAM  112 (276)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            778888889888888875332222222212    67888753210                    133455667899999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.|.|.+.|.-|+++||-  |++.++++|-+....-|
T Consensus       113 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  147 (276)
T 2j5i_A          113 VNGWCFGGGFSPLVACDL--AICADEATFGLSEINWG  147 (276)
T ss_dssp             ECSCEEGGGHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             ECCeeehhHHHHHHhCCE--EEEcCCCEEeCcccccC
Confidence            999999999999999997  99999999988665544

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=95.73  E-value=0.051  Score=47.85  Aligned_cols=90  Identities=19%  Similarity=0.224  Sum_probs=67.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe------CCCccHhH-------------------HHHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN------CPGGSIYS-------------------VLAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN------SPGGsV~a-------------------GlaIyd~L~~~~~~V~T  168 (240)
                      +|.++...+.+.|..++.++..+-  |.|-      |-|+|+..                   ...++..|..++.||.+
T Consensus        39 l~~~m~~~L~~al~~~~~d~~vr~--vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA  116 (274)
T 4fzw_C           39 FNDEMHAQLAECLKQVERDDTIRC--LLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVIC  116 (274)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCE--EEEEESSSCSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence            788888999999888876443222  2223      23455421                   12466778889999999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .+.|.|...|.-|+++||-  |++.++++|-+....-|.
T Consensus       117 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  153 (274)
T 4fzw_C          117 AVNGVAAGAGATLALGGDI--VIAARSAKFVMAFSKLGL  153 (274)
T ss_dssp             EECSCEETHHHHHHHTSSE--EEEETTCEEECCGGGTTC
T ss_pred             EECCceeecCceeeeccce--EEECCCCEEECcccCccc
Confidence            9999999999999999997  999999999887666553

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=95.70  E-value=0.018  Score=52.19  Aligned_cols=91  Identities=15%  Similarity=0.200  Sum_probs=68.0

Q ss_pred             EEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHH-------HHHHHHHhhc---CCCeEEEEcceechHH
Q 026362          109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV-------LAIYDCMSWI---KPKVGTVCFGVAASQA  178 (240)
Q Consensus       109 fl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aG-------laIyd~L~~~---~~~V~Tvv~G~AaS~a  178 (240)
                      |+++.++......+...+..... + .-++.++.+|+|+++.++       -.|+..+..+   +.|+.+++.|-|.+.|
T Consensus       129 ~~ggslg~~~~~Ki~r~~e~A~~-~-~~PvI~l~~sGGarlqeg~~~l~~~~~i~~al~~~~~~~vP~IavV~G~~~GGg  206 (304)
T 2f9y_B          129 FMGGSMGSVVGARFVRAVEQALE-D-NCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGV  206 (304)
T ss_dssp             STTTCBCTHHHHHHHHHHHHHHH-H-TCCEEEEEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHHHh-C-CCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCccHH
Confidence            35678888888887776665444 3 468889999999998654       2345555444   7899999999998888


Q ss_pred             HHH-HcCCCCCcEEeccCceEeeecC
Q 026362          179 AII-LAGGEKGMRYAMPNARIMLNQP  203 (240)
Q Consensus       179 slI-l~aG~kgkR~a~PnA~iMIHqP  203 (240)
                      ++. .++|+.  +++.|+|+|.+--|
T Consensus       207 ~a~~a~~~D~--via~~~A~i~v~Gp  230 (304)
T 2f9y_B          207 SASFAMLGDL--NIAEPKALIGFAGP  230 (304)
T ss_dssp             HTTGGGCCSE--EEECTTCBEESSCH
T ss_pred             HHHHHhcCCE--EEEeCCcEEEeecH
Confidence            665 557886  89999999987544

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=95.65  E-value=0.057  Score=48.03  Aligned_cols=90  Identities=18%  Similarity=0.167  Sum_probs=67.2

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEEEe-----CCCccHhHH-------------------HHHHHHHhhcCCCeEE
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV-------------------LAIYDCMSWIKPKVGT  168 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN-----SPGGsV~aG-------------------laIyd~L~~~~~~V~T  168 (240)
                      .+|.++...+.+.|..++.++ . .+.|.-.     |.|+|+..-                   ..++..|..++.||.+
T Consensus        47 al~~~m~~~L~~al~~~~~d~-~-r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  124 (291)
T 2fbm_A           47 ALNTEVIKEIVNALNSAAADD-S-KLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVV  124 (291)
T ss_dssp             CBCHHHHHHHHHHHHHHHHSS-C-SEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCC-C-eEEEEECCCCCccCCcCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            378888899999888887643 3 3333222     457777431                   1245567788999999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.|.+.|.-|+++||-  |++.++++|-+-...-|
T Consensus       125 aV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~lG  160 (291)
T 2fbm_A          125 SVNGPAIGLGASILPLCDL--VWANEKAWFQTPYTTFG  160 (291)
T ss_dssp             EECSCEETHHHHTGGGSSE--EEEETTCEEECCHHHHT
T ss_pred             EECCeeecHHHHHHHhCCE--EEEeCCCEEECcHHhcC
Confidence            9999999999999999997  99999999887554433

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=95.63  E-value=0.054  Score=46.43  Aligned_cols=91  Identities=15%  Similarity=0.123  Sum_probs=68.0

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEE-----EeCCCccHhH---------------HHHHHHHHhhcCCCeEEEEcc
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMY-----LNCPGGSIYS---------------VLAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~-----INSPGGsV~a---------------GlaIyd~L~~~~~~V~Tvv~G  172 (240)
                      .+|.++..++.+.|..++.+ +.+ +.|.     .=|-|+|+..               ...++..|..++.||.+.+.|
T Consensus        27 al~~~~~~~L~~al~~~~~d-~vr-~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  104 (233)
T 3r6h_A           27 VLGPTMQQALNEAIDAADRD-NVG-ALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTG  104 (233)
T ss_dssp             CCSHHHHHHHHHHHHHHHHH-TCS-EEEEECCSSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHHhC-CCe-EEEEECCCCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            47788888899888888753 222 2222     1234566532               245677788899999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .|.+.|.-|.++||-  |++.++++|-+-...-|.
T Consensus       105 ~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl  137 (233)
T 3r6h_A          105 HAIAMGAFLLCSGDH--RVAAHAYNVQANEVAIGM  137 (233)
T ss_dssp             EEETHHHHHHTTSSE--EEECTTCCEECCGGGGTC
T ss_pred             cchHHHHHHHHhCCE--EEEeCCcEEECchhhhCC
Confidence            999999999999997  999999999886655554

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=95.61  E-value=0.051  Score=47.39  Aligned_cols=89  Identities=15%  Similarity=0.103  Sum_probs=64.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHhH------------HHH-HHHHH-h--hcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIYS------------VLA-IYDCM-S--WIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~a------------Gla-Iyd~L-~--~~~~~V~Tvv~  171 (240)
                      +|.++...+.+.|..++.++..+-  |.|.+-      |+|+..            ... +++.| .  .++.||.+.+.
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~  110 (265)
T 3rsi_A           33 LSTNMVSQFAAAWDEIDHDDGIRA--AILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVN  110 (265)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCE--EEEEESTTCSEECC--------------CCCHHHHHHHTTSSCCCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCCcccCcCCCcccccchHHHHHHhHHHHHHHHHHhcCCCCCEEEEEC
Confidence            788889999999888876443222  222333      444420            022 67777 7  78899999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.|.+.|.-|+++||-  |++.++++|-+-...-|
T Consensus       111 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  143 (265)
T 3rsi_A          111 GACLGGGCEMLQQTDI--RVSDEHATFGLPEVQRG  143 (265)
T ss_dssp             SCEETHHHHHHTTCSE--EEEETTCEEECGGGGGT
T ss_pred             CeeeHHHHHHHHHCCE--EEecCCCEEECchhccC
Confidence            9999999999999997  99999999987665544

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=95.58  E-value=0.03  Score=48.86  Aligned_cols=90  Identities=16%  Similarity=0.043  Sum_probs=65.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhH---------------HHHHHHHHhhcCCCeEEEEccee
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS---------------VLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~a---------------GlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |.|+|+..               ...+++.|...+.||.+.+.|.|
T Consensus        40 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  119 (257)
T 1szo_A           40 WTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPV  119 (257)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCB
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCch
Confidence            678888889998888876443333322222    45666532               12456777888999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEee-ecCCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIML-NQPQSG  206 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMI-HqP~~g  206 (240)
                      . .|.-|+++||-  |++.++++|.+ -...-|
T Consensus       120 ~-GG~~LalacD~--ria~~~a~f~~~pe~~lG  149 (257)
T 1szo_A          120 T-NAPEIPVMSDI--VLAAESATFQDGPHFPSG  149 (257)
T ss_dssp             C-SSTHHHHTSSE--EEEETTCEEECTTSGGGT
T ss_pred             H-HHHHHHHHCCE--EEEeCCCEEecCcccccc
Confidence            9 58889999996  99999999987 544433

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=95.57  E-value=0.031  Score=54.26  Aligned_cols=90  Identities=20%  Similarity=0.182  Sum_probs=67.4

Q ss_pred             cccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCc----------cHhHHHHHHHHHhhcCCCeEEEEcceechHHHHH
Q 026362          112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPGG----------SIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII  181 (240)
Q Consensus       112 g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGG----------sV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslI  181 (240)
                      |.++.+.+.....-+. +-.. ..-||..++|+||-          -+.++-.+++.+...+.|+.+++.|-|+|.|.+.
T Consensus       344 G~~~~~~~~Kaar~i~-~a~~-~~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~a  421 (527)
T 1vrg_A          344 GVLDIDSSDKAARFIR-FLDA-FNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIA  421 (527)
T ss_dssp             GCBCHHHHHHHHHHHH-HHHH-TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH-HHhh-cCCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHH
Confidence            5688877655444333 3322 35689999999984          4456677888888899999999999999998888


Q ss_pred             HcC----CCCCcEEeccCceEeeecCCC
Q 026362          182 LAG----GEKGMRYAMPNARIMLNQPQS  205 (240)
Q Consensus       182 l~a----G~kgkR~a~PnA~iMIHqP~~  205 (240)
                      +++    ++  ..++.|+|++-+=.|.+
T Consensus       422 m~~~~~~~d--~~~a~p~a~~~Vm~peg  447 (527)
T 1vrg_A          422 MGSKHLGAD--MVLAWPSAEIAVMGPEG  447 (527)
T ss_dssp             TTCGGGTCS--EEEECTTCEEESSCHHH
T ss_pred             hcCCCCCCC--EEEEcCCCeEEecCHHH
Confidence            776    55  37889999998766654

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=95.52  E-value=0.06  Score=53.00  Aligned_cols=96  Identities=10%  Similarity=0.061  Sum_probs=71.4

Q ss_pred             cEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceec
Q 026362          106 RIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAA  175 (240)
Q Consensus       106 RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~Aa  175 (240)
                      ++...+|.++.+.+.....-+ .+-.. ..-||..++|.||          |-..++-.+.+++...+.|+.|++.|-+.
T Consensus       379 ~~~~~~G~l~~~~a~Kaarfi-~~c~~-~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~itvI~g~~~  456 (587)
T 1pix_A          379 GSVGIGGKLYRQGLVKMNEFV-TLCAR-DRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGT  456 (587)
T ss_dssp             TCCEETTEECHHHHHHHHHHH-HHHHH-TTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEE
T ss_pred             cccccCCCcCHHHHHHHHHHH-HHhhc-CCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCc
Confidence            344567889988765443333 23222 2568999999998          45667888999999999999999999999


Q ss_pred             hHHHHHHcC----C--CCCcEEeccCceEeeecCCC
Q 026362          176 SQAAIILAG----G--EKGMRYAMPNARIMLNQPQS  205 (240)
Q Consensus       176 S~aslIl~a----G--~kgkR~a~PnA~iMIHqP~~  205 (240)
                      |.|.+.+++    +  +  ..++.|+|++-+=.|.+
T Consensus       457 Ggg~~am~~~~~~~~~d--~~~a~p~A~~~Vm~peg  490 (587)
T 1pix_A          457 AAAHYVLGGPQGNDTNA--FSIGTAATEIAVMNGET  490 (587)
T ss_dssp             TTHHHHTTCTTCTTTEE--EEEECTTCEEESSCHHH
T ss_pred             cHHHHHhcCcccCcccc--eeeeccCCeEecCCHHH
Confidence            999888775    3  4  37888999988765553

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=95.51  E-value=0.035  Score=48.74  Aligned_cols=91  Identities=12%  Similarity=0.096  Sum_probs=66.4

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE----EeCCCccHhHH-----------------HHHHHHHhhcCCCeEEEEcc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYSV-----------------LAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~----INSPGGsV~aG-----------------laIyd~L~~~~~~V~Tvv~G  172 (240)
                      +|.++...+.+.|..++.++..+-|.|.    .=|.|+|+..-                 ..++..|..++.||.+.+.|
T Consensus        37 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  116 (272)
T 3qk8_A           37 VGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRG  116 (272)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCCSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            7888888999998888764433322221    12345555321                 23566788889999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.+.|.-|+++||-  |++.++++|.+....-|
T Consensus       117 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  148 (272)
T 3qk8_A          117 PAVGAGLVVALLADI--SVASATAKIIDGHTKLG  148 (272)
T ss_dssp             EEEHHHHHHHHHSSE--EEEETTCEEECCHHHHT
T ss_pred             eeehHHHHHHHhCCE--EEEcCCCEEECchhccC
Confidence            999999999999997  99999999887554433

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=95.43  E-value=0.11  Score=47.55  Aligned_cols=91  Identities=12%  Similarity=0.184  Sum_probs=67.2

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe-----CCCccHhH------------------HHHHHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS------------------VLAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN-----SPGGsV~a------------------GlaIyd~L~~~~~~V~Tvv  170 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+     |-|||+..                  ...++..|..++.||.+.+
T Consensus        33 l~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav  112 (353)
T 4hdt_A           33 LTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKPYVSIM  112 (353)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence            788899999999988876443222222111     23566532                  2346667888999999999


Q ss_pred             cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.|.+.|.-|+++||-  |++.++++|.+-...-|
T Consensus       113 ~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~iG  146 (353)
T 4hdt_A          113 DGIVMGGGVGVGAHGNV--RVVTDTTKMAMPEVGIG  146 (353)
T ss_dssp             CBEEETHHHHHHTTSSE--EEECTTCEEECCGGGGT
T ss_pred             ECceeecCccccCCcCe--eccchhccccCcccccc
Confidence            99999999999999997  99999999988654433

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=95.42  E-value=0.032  Score=54.12  Aligned_cols=90  Identities=16%  Similarity=0.177  Sum_probs=68.5

Q ss_pred             cccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHH
Q 026362          112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII  181 (240)
Q Consensus       112 g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslI  181 (240)
                      |.++.+.+.....-+. +-. .-.-||..++|.||          |-+.++-.+.+.+...+.|+.|++.|-+.|.|.+.
T Consensus       340 G~~~~~~a~Kaar~i~-~~~-~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~a  417 (523)
T 1on3_A          340 GCLDINASDKAAEFVN-FCD-SFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLA  417 (523)
T ss_dssp             GCBCHHHHHHHHHHHH-HHH-HTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHT
T ss_pred             CCCCHHHHHHHHHHHH-HHH-hcCCCeEEEEeCCCcCcchHHHHhhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHH
Confidence            5688877654443332 322 22568999999998          55667888888999999999999999999999888


Q ss_pred             HcC----CCCCcEEeccCceEeeecCCC
Q 026362          182 LAG----GEKGMRYAMPNARIMLNQPQS  205 (240)
Q Consensus       182 l~a----G~kgkR~a~PnA~iMIHqP~~  205 (240)
                      +++    ++  ..++.|+|++-+=.|.+
T Consensus       418 m~~~~~~~d--~~~a~p~a~~~Vm~peg  443 (523)
T 1on3_A          418 MCNRDLGAD--AVYAWPSAEIAVMGAEG  443 (523)
T ss_dssp             TTCGGGTCS--EEEECTTCEEESSCHHH
T ss_pred             hcccCCCCC--EEEEcCCCeEEecCHHH
Confidence            776    55  37888999998766654

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=95.28  E-value=0.032  Score=48.76  Aligned_cols=91  Identities=13%  Similarity=0.070  Sum_probs=63.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhHH------HHHHHHHhhcCCCeEEEEcceechHHHHHHc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------LAIYDCMSWIKPKVGTVCFGVAASQAAIILA  183 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~aG------laIyd~L~~~~~~V~Tvv~G~AaS~aslIl~  183 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |.|+|+..-      ..+...+..++.||.+.+.|.|.+.|.-|++
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal  112 (256)
T 3pe8_A           33 LSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTTELPDISPKWPDMTKPVIGAINGAAVTGGLELAL  112 (256)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC---------CCCCCCCSSCEEEEECSEEETHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHH
Confidence            788889999999888876443222222111    334554321      1122345667789999999999999999999


Q ss_pred             CCCCCcEEeccCceEeeecCCCC
Q 026362          184 GGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       184 aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +||-  |++.++++|.+....-|
T Consensus       113 acD~--~ia~~~a~f~~pe~~~G  133 (256)
T 3pe8_A          113 YCDI--LIASENAKFADTHARVG  133 (256)
T ss_dssp             HSSE--EEEETTCEEECCHHHHT
T ss_pred             hCCE--EEEcCCCEEECchhhhC
Confidence            9997  99999999987554433

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=95.23  E-value=0.078  Score=51.39  Aligned_cols=91  Identities=20%  Similarity=0.230  Sum_probs=73.4

Q ss_pred             ccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHHH
Q 026362          111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI  180 (240)
Q Consensus       111 ~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~asl  180 (240)
                      +|.++.+.+..+..-+. +.... .-||..++||||          |-+..+-.+++.+...+.|+.+++.|-+.+.|.+
T Consensus       338 gG~l~~~~~~K~ar~i~-~a~~~-~~Plv~l~ds~G~~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~  415 (522)
T 1x0u_A          338 GGSIDIDAADKAARFIR-FCDAF-NIPLISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHI  415 (522)
T ss_dssp             GGCBCHHHHHHHHHHHH-HHHHT-TCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH-HHhhC-CCCEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHH
Confidence            36688887776655444 33323 568999999999          7778888889999999999999999999999998


Q ss_pred             HHcC----CCCCcEEeccCceEeeecCCC
Q 026362          181 ILAG----GEKGMRYAMPNARIMLNQPQS  205 (240)
Q Consensus       181 Il~a----G~kgkR~a~PnA~iMIHqP~~  205 (240)
                      .++.    ++.  .++.|+|++-+=.|.+
T Consensus       416 ~~a~~a~~~D~--v~a~p~A~i~v~gpeg  442 (522)
T 1x0u_A          416 AMSIKSLGADL--VYAWPTAEIAVTGPEG  442 (522)
T ss_dssp             HTCCGGGTCSE--EEECTTCEEESSCHHH
T ss_pred             HhcccccCCCE--EEEeCCCEEEecCHHH
Confidence            8877    774  7889999998877773

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=95.19  E-value=0.14  Score=44.44  Aligned_cols=90  Identities=10%  Similarity=0.113  Sum_probs=67.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeC------CCccHhH---------------HHHHHHHHhhcCCCeEEEEcc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNC------PGGSIYS---------------VLAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INS------PGGsV~a---------------GlaIyd~L~~~~~~V~Tvv~G  172 (240)
                      +|.++...+.+.|..++. +..+ + |.|-+      -|+|+..               ...++..|..++.||.+.+.|
T Consensus        31 l~~~~~~~L~~al~~~~~-~~vr-~-vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  107 (254)
T 3isa_A           31 LSAELVEALIDGVDAAHR-EQVP-L-LVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHG  107 (254)
T ss_dssp             BCHHHHHHHHHHHHHHHH-TTCS-E-EEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECS
T ss_pred             CCHHHHHHHHHHHHHhhc-CCcE-E-EEEECCCCceeeCcChHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            788888899998888864 3222 2 22332      2444421               234567788889999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeecCCCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG  208 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~  208 (240)
                      .|.+.|.-|+++||-  |++.++++|-+....-|..
T Consensus       108 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~  141 (254)
T 3isa_A          108 RNFGAGVDLFAACKW--RYCTPEAGFRMPGLKFGLV  141 (254)
T ss_dssp             EEETHHHHHHHHSSE--EEECTTCEEECCGGGGTCC
T ss_pred             eEeecchhHHHhCCE--EEEcCCCEEECchhccCcc
Confidence            999999999999997  9999999998876665544

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=95.17  E-value=0.11  Score=45.76  Aligned_cols=90  Identities=10%  Similarity=-0.045  Sum_probs=65.2

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeC------CCccHhH--------------------HHHHHHHHhhcCCCeE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNC------PGGSIYS--------------------VLAIYDCMSWIKPKVG  167 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INS------PGGsV~a--------------------GlaIyd~L~~~~~~V~  167 (240)
                      +|.++...+.+.|..++.++..+ + |.|.+      -|+|+..                    ...++..|..++.||.
T Consensus        44 l~~~~~~~L~~al~~~~~d~~vr-~-vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  121 (279)
T 3t3w_A           44 QNPELLDELDAAWTRAAEDNDVS-V-IVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSI  121 (279)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCC-E-EEEEECSSCSBCCBCCC--------CCHHHHHHHHHHHTHHHHHHHHHCSSCEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeE-E-EEEECCCCceeeccChHhhhhcccccchHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            77888899999988887644322 2 22222      3455421                    1224566788899999


Q ss_pred             EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      +.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|.
T Consensus       122 Aav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl  159 (279)
T 3t3w_A          122 AAVQGRCISGGLLLCWPCDL--IIAAEDALFSDPVVLMDI  159 (279)
T ss_dssp             EEECSEEEGGGHHHHTTSSE--EEEETTCEEECCGGGGTC
T ss_pred             EEECCeEhHHHHHHHHhCCE--EEecCCCEEeCcHHhcCC
Confidence            99999999999999999997  999999998876554443

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=95.14  E-value=0.081  Score=47.02  Aligned_cols=90  Identities=13%  Similarity=0.059  Sum_probs=65.8

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEEEeCC----Cc-cHhH------------------HHHHHHHHhhcCCCeEEE
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMYLNCP----GG-SIYS------------------VLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP----GG-sV~a------------------GlaIyd~L~~~~~~V~Tv  169 (240)
                      .+|.++...+.+.|..++.++..+-|.|.=+.+    || |+..                  ...++..|..++.||.+.
T Consensus        30 al~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  109 (289)
T 3h0u_A           30 LIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAK  109 (289)
T ss_dssp             CBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            378888888998888887544333333322222    33 6531                  234667788999999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccC-ceEeeecCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPN-ARIMLNQPQ  204 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~Pn-A~iMIHqP~  204 (240)
                      +.|.|.+.|.-|+++||-  |++.++ ++|-+-...
T Consensus       110 V~G~a~GgG~~LalacD~--ria~~~~a~f~~pe~~  143 (289)
T 3h0u_A          110 LRGRARGAGSEFLLACDM--RFASRENAILGQPEVG  143 (289)
T ss_dssp             ECSEEETHHHHHHHHSSE--EEEETTTCEEECTHHH
T ss_pred             ECCEeehhhHHHHHhCCE--EEEeCCCcEEeCchhh
Confidence            999999999999999997  999998 998875544

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=95.11  E-value=0.032  Score=49.02  Aligned_cols=84  Identities=8%  Similarity=-0.042  Sum_probs=62.3

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhH----------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~a----------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |.|+|+..                ...+++.|...+.||.+.+.|.
T Consensus        48 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  127 (263)
T 2j5g_A           48 FTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGA  127 (263)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence            678888889998888876443333333212    56776531                1245667778899999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEee
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIML  200 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMI  200 (240)
                      |. .|.-|+++||-  |++.++++|.+
T Consensus       128 a~-GG~~LalacD~--ria~~~a~f~~  151 (263)
T 2j5g_A          128 AL-LHSEYILTTDI--ILASENTVFQD  151 (263)
T ss_dssp             EC-SCGGGGGGCSE--EEEETTCEECC
T ss_pred             ch-HHHHHHHhCCE--EEEcCCCEEec
Confidence            99 58889999996  99999999876

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=95.08  E-value=0.16  Score=43.41  Aligned_cols=90  Identities=21%  Similarity=0.169  Sum_probs=68.1

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEE-----EeCCCccHhH--------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMY-----LNCPGGSIYS--------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~-----INSPGGsV~a--------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      .+|.++...+.+.|..++. |. + +.|.     .=|-|+|+..              ...++..|..++.||.+.+.|.
T Consensus        28 al~~~~~~~L~~al~~~~~-d~-~-~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  104 (232)
T 3ot6_A           28 AISPDVIIAFNAALDQAEK-DR-A-IVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPGH  104 (232)
T ss_dssp             CBCHHHHHHHHHHHHHHHH-TT-C-EEEEECBTEEEECCBCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEECCEE
T ss_pred             CCCHHHHHHHHHHHHHHhc-CC-C-EEEEECCCCCccCCcCHHHHhhChHHHHHHHHHHHHHHHHHHcCCCCEEEEECCE
Confidence            3778888889888888875 32 2 2222     2344667643              2456778889999999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccC-ceEeeecCCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPN-ARIMLNQPQSGS  207 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~Pn-A~iMIHqP~~g~  207 (240)
                      |.+.|.-++++||-  |++.++ ++|-+-...-|.
T Consensus       105 a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl  137 (232)
T 3ot6_A          105 AVAKGAFLLLSADY--RIGVAGPFSIGLNEVQIGM  137 (232)
T ss_dssp             EETHHHHHHTTSSE--EEEECSSCCEECCTTTTTC
T ss_pred             eehHHHHHHHHCCE--EEEeCCCcEEECcccccCC
Confidence            99999999999997  999998 788886655554

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=95.06  E-value=0.013  Score=51.31  Aligned_cols=91  Identities=13%  Similarity=0.099  Sum_probs=67.3

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE----EeCCCccHhHH--------------HHHHHHHhhcCCCeEEEEcceec
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYSV--------------LAIYDCMSWIKPKVGTVCFGVAA  175 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~----INSPGGsV~aG--------------laIyd~L~~~~~~V~Tvv~G~Aa  175 (240)
                      +|.++...+.+.|..++.++..+-|.|.    .=|.|+|+..-              ..++..|..++.||.+.+.|.|.
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  110 (265)
T 3qxz_A           31 FTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAI  110 (265)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSCCCSCCSSSCGGGSSSCEEEEECSEEE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence            7888899999998888764433322221    23445555421              23455678888999999999999


Q ss_pred             hHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          176 SQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       176 S~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.|.-|+++||-  |++.++++|-+....-|
T Consensus       111 GgG~~lalacD~--~ia~~~a~f~~pe~~~G  139 (265)
T 3qxz_A          111 GIGMTLALHADI--RILAEEGRYAIPQVRFG  139 (265)
T ss_dssp             THHHHHHTTSSE--EEEETTCCEECCGGGGT
T ss_pred             hHhHHHHHHCCE--EEEcCCCEEECcccccC
Confidence            999999999997  99999999987665544

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=94.97  E-value=0.014  Score=51.37  Aligned_cols=89  Identities=15%  Similarity=0.124  Sum_probs=60.9

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHhHHH---------------HHHHHHh---hcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIYSVL---------------AIYDCMS---WIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~aGl---------------aIyd~L~---~~~~~V~Tv  169 (240)
                      +|.++...+.+.|..++.++..+-  |.|.+.      |+|+..-.               .+++.|.   .++.||.+.
T Consensus        44 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAa  121 (278)
T 4f47_A           44 LSGEMMQIMVEAWDRVDNDPDIRC--CILTGAGGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAA  121 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCE--EEEEESTTCCC----------------------CTTCBTTTTBSCCCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeeE--EEEECCCCcccCCcChHhhhccchhhhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence            788888999999888876443322  223333      34442211               1223344   677899999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.|.|.+.|.-|+++||-  |++.++++|-+-....|
T Consensus       122 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  156 (278)
T 4f47_A          122 VEGPAIAGGTEILQGTDI--RVAAESAKFGISEAKWS  156 (278)
T ss_dssp             ECSEEETHHHHHHTTCSE--EEEETTCEEECCGGGGT
T ss_pred             ECCEEehHHHHHHHhCCE--EEEcCCCEEECcccccC
Confidence            999999999999999997  99999999987665544

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=94.90  E-value=0.1  Score=45.37  Aligned_cols=89  Identities=16%  Similarity=0.122  Sum_probs=68.6

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-eC------CCccHhH-------------HHHHHHHHhhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-NC------PGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NS------PGGsV~a-------------GlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      +|.++...+.+.|..++.++   ++.+.| -+      -|+|+.+             ...++..|..++.||.+.+.|.
T Consensus        29 l~~~~~~~L~~al~~~~~d~---~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  105 (258)
T 4fzw_A           29 LNNALLMQLVNELEAAATDT---SISVCVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGY  105 (258)
T ss_dssp             BCHHHHHHHHHHHHHHHTCT---TCCEEEEECCSSEEEECBCHHHHHTCCHHHHHTCSHHHHHHHHHTCCSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CeEEEEEeCCCCceeCCCchhhhccchhhhHHHhHHHHHHHHHHHCCCCEEEEEcCc
Confidence            77888889999888887643   333333 32      2555532             2357888999999999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      |...|.-|+++||-  |++.++++|-+-...-|.
T Consensus       106 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  137 (258)
T 4fzw_A          106 ALGAGCELALLCDV--VVAGENARFGLPEITLGI  137 (258)
T ss_dssp             EETHHHHHHHHSSE--EEEETTCEEECCGGGGTC
T ss_pred             ceeeeeEeecccce--EEECCCCEEECcccCCCc
Confidence            99999999999997  999999999886666553

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=94.85  E-value=0.12  Score=50.23  Aligned_cols=90  Identities=17%  Similarity=0.237  Sum_probs=68.6

Q ss_pred             cccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHH
Q 026362          112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII  181 (240)
Q Consensus       112 g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslI  181 (240)
                      |.++.+.+..... ++.+-... .-||..++|+||          |-+..+-.+.+++...+.|+.|++.|.+.|.|.+.
T Consensus       352 G~l~~~~a~Kaar-fi~lcd~~-~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~a  429 (531)
T 3n6r_B          352 GCLDIDSSRKAAR-FVRFCDAF-EIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVV  429 (531)
T ss_dssp             GCBCHHHHHHHHH-HHHHHHHT-TCCEEEEEEECSBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHHhhcc-CCCEEEEeCCCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhh
Confidence            6688877654333 33333323 468999999998          34567788999999999999999999999999888


Q ss_pred             HcC----CCCCcEEeccCceEeeecCCC
Q 026362          182 LAG----GEKGMRYAMPNARIMLNQPQS  205 (240)
Q Consensus       182 l~a----G~kgkR~a~PnA~iMIHqP~~  205 (240)
                      +++    ++  ..++.|+|++-+=.|.+
T Consensus       430 m~~~~~~~d--~~~awp~A~i~Vm~peg  455 (531)
T 3n6r_B          430 MSSKHLRAD--FNYAWPTAEVAVMGAKG  455 (531)
T ss_dssp             TTCGGGTCS--EEEECTTCEEESSCHHH
T ss_pred             ccCccCCCC--eEEEcCCceEecCCHHH
Confidence            775    55  37899999998866664

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=94.84  E-value=0.097  Score=46.45  Aligned_cols=92  Identities=15%  Similarity=0.051  Sum_probs=67.7

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEEEe-----CCCccHhH--------------------HHHHHHHHhhcCCCeE
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS--------------------VLAIYDCMSWIKPKVG  167 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN-----SPGGsV~a--------------------GlaIyd~L~~~~~~V~  167 (240)
                      .+|.++...+.+.|..++.++..+-|.|.=.     |-|+|+..                    ...++..|..++.||.
T Consensus        31 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  110 (287)
T 3gkb_A           31 VIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTI  110 (287)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSSEEE
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            4778888889998888876443332222211     33556532                    1236778889999999


Q ss_pred             EEEcceechHHHHHHcCCCCCcEEecc-CceEeeecCCCC
Q 026362          168 TVCFGVAASQAAIILAGGEKGMRYAMP-NARIMLNQPQSG  206 (240)
Q Consensus       168 Tvv~G~AaS~aslIl~aG~kgkR~a~P-nA~iMIHqP~~g  206 (240)
                      +.+.|.|.+.|.-|+++||-  |++.+ +++|-+-...-|
T Consensus       111 AaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~lG  148 (287)
T 3gkb_A          111 VKLAGKARGGGAEFVAAADM--AFAAAETAGLGQIEALMG  148 (287)
T ss_dssp             EEECSEEETHHHHHHHHSSE--EEEETTTCEEECGGGGGT
T ss_pred             EEECCeeehHHHHHHHHCCE--EEEeCCCcEEECcccccC
Confidence            99999999999999999997  99999 999988665544

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=94.68  E-value=0.11  Score=45.26  Aligned_cols=91  Identities=12%  Similarity=0.061  Sum_probs=65.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhHHHH---------------HHHHH-hhcCCCeEEEEcce
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSVLA---------------IYDCM-SWIKPKVGTVCFGV  173 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~aGla---------------Iyd~L-~~~~~~V~Tvv~G~  173 (240)
                      +|.++...+.+.|..++.++..+-|.|.=+    |-|+|+..-..               .++.| ..++.||.+.+.|.
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G~  112 (265)
T 3swx_A           33 FDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGK  112 (265)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CCCCCTTCCCTTCCSSCCCSSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence            788888999999888876443332222211    23566654222               23345 66778999999999


Q ss_pred             echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.+.|.-|+++||-  |++.++++|.+-...-|
T Consensus       113 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  143 (265)
T 3swx_A          113 VLTLGIELALAADI--VIADETATFAQLEVNRG  143 (265)
T ss_dssp             EETHHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             eehHHHHHHHHCCE--EEEcCCCEEECcccccc
Confidence            99999999999997  99999999988666544

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=94.61  E-value=0.16  Score=49.47  Aligned_cols=90  Identities=18%  Similarity=0.229  Sum_probs=66.1

Q ss_pred             cccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHH
Q 026362          112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII  181 (240)
Q Consensus       112 g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslI  181 (240)
                      |.++.+.+..... ++.+-... .-||..++|+||          |-+..+-.+.+++...+.|+.|++.|.+.|.|.+.
T Consensus       346 G~l~~~~a~Kaar-fi~~c~~~-~iPlv~lvDtpGf~~G~~~E~~gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~~a  423 (530)
T 3iav_A          346 GCLDITASEKAAR-FVRTCDAF-NVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYVV  423 (530)
T ss_dssp             GCBCHHHHHHHHH-HHHHHHHT-TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHHHHhc-CCCEEEEeeCCCCCccHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHHHH
Confidence            6788877654333 33333323 468999999998          45567778999999999999999999999866655


Q ss_pred             HcC----CCCCcEEeccCceEeeecCCC
Q 026362          182 LAG----GEKGMRYAMPNARIMLNQPQS  205 (240)
Q Consensus       182 l~a----G~kgkR~a~PnA~iMIHqP~~  205 (240)
                      +++    ++  ..++.|||++-+=.|.+
T Consensus       424 m~~~~~~~d--~~~awp~a~~~Vm~~eg  449 (530)
T 3iav_A          424 MGSKHLGAD--LNLAWPTAQIAVMGAQG  449 (530)
T ss_dssp             TTCGGGTCS--EEEECTTCEEESSCHHH
T ss_pred             hcCCCCCCC--EEEEcCCceEecCCHHH
Confidence            443    34  47889999998866654

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=94.56  E-value=0.063  Score=46.61  Aligned_cols=92  Identities=8%  Similarity=0.084  Sum_probs=65.5

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHhHHH---------------HHHHHH-hhcCCCeEEEEcc
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSVL---------------AIYDCM-SWIKPKVGTVCFG  172 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~aGl---------------aIyd~L-~~~~~~V~Tvv~G  172 (240)
                      .+|.++...+.+.|..++.++..+-|.|.=+    |-|+|+..-.               ..+..| ...+.||.+.+.|
T Consensus        35 al~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G  114 (258)
T 3lao_A           35 AFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQG  114 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            3778888899998888876443332222222    2256654321               234455 6778899999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.+.|.-|+++||-  |++.++++|.+-...-|
T Consensus       115 ~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  146 (258)
T 3lao_A          115 TCWTAGIELMLNADI--AVAARGTRFAHLEVLRG  146 (258)
T ss_dssp             EEETHHHHHHHTSSE--EEEETTCEEECGGGGTC
T ss_pred             EeEhHHHHHHHhCCE--EEEcCCCEEeCcccccC
Confidence            999999999999997  99999999888665433

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=94.38  E-value=0.11  Score=50.81  Aligned_cols=89  Identities=11%  Similarity=0.115  Sum_probs=66.9

Q ss_pred             cChhHHHHHHHHHHhhhcc-CCCCCceEEE-----eCCCccHhHH---------------HHHHHHH----hhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATI-DEDADILMYL-----NCPGGSIYSV---------------LAIYDCM----SWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~-d~~~~I~l~I-----NSPGGsV~aG---------------laIyd~L----~~~~~~V~T  168 (240)
                      +|.++...+.+.|..++.+ +..+-|.|.=     -|.|+++..-               ..+++.|    ..++.||.+
T Consensus        55 Ls~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIA  134 (556)
T 2w3p_A           55 YDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLA  134 (556)
T ss_dssp             ECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            6677888888888888765 4444343332     2677887431               2355667    788999999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccC--ceEeeecCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPN--ARIMLNQPQ  204 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~Pn--A~iMIHqP~  204 (240)
                      .+.|.|.+.|.-|+++||-  |++.++  ++|.+-...
T Consensus       135 AVnG~AlGGGleLALACD~--rIAse~~~A~FglPEv~  170 (556)
T 2w3p_A          135 AVNGACAGGGYELALACDE--IYLVDDRSSSVSLPEVP  170 (556)
T ss_dssp             EECSEEETHHHHHHHHSSE--EEEECSSSCEEECCHHH
T ss_pred             EECCeechhhHHHHHhCCE--EEEcCCCCcEEeccccc
Confidence            9999999999999999996  999999  988875444

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=94.35  E-value=0.24  Score=43.61  Aligned_cols=87  Identities=14%  Similarity=0.153  Sum_probs=64.2

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE-Ee------CCCccHh---------------HHHHHHHHHhhcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY-LN------CPGGSIY---------------SVLAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN------SPGGsV~---------------aGlaIyd~L~~~~~~V~Tvv~  171 (240)
                      +|.++...+.+.|..+   ++  ++.+. |-      |-|+|+.               ....+++.|..++.||.+.+.
T Consensus        40 l~~~~~~~L~~al~~~---d~--~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  114 (275)
T 3hin_A           40 LNDGLMAALKDCLTDI---PD--QIRAVVIHGIGDHFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALK  114 (275)
T ss_dssp             BCHHHHHHHHHHTSSC---CT--TCCEEEEEESSSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHh---Cc--CceEEEEECCCCCccCCCCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            7777777777776655   22  33332 23      2345542               124567788899999999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      |.|.+.|.-|+++||-  |++.++++|-+-....|.
T Consensus       115 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  148 (275)
T 3hin_A          115 GAVIGGGLELACAAHI--RVAEASAYYALPEGSRGI  148 (275)
T ss_dssp             SEEETHHHHHHHHSSE--EEEETTCEEECGGGGGTC
T ss_pred             CeeehHHHHHHHhCCE--EEEcCCCEEECchhccCC
Confidence            9999999999999997  999999999887766553

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=94.32  E-value=0.12  Score=48.34  Aligned_cols=87  Identities=13%  Similarity=0.100  Sum_probs=64.8

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE-eC-------CCccHhHH----------------------HHHHHHHhhcC
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL-NC-------PGGSIYSV----------------------LAIYDCMSWIK  163 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NS-------PGGsV~aG----------------------laIyd~L~~~~  163 (240)
                      +|.++...+.+.|..++.++   ++.+.| -+       -|||+...                      ..++..|..++
T Consensus        66 l~~~m~~~L~~al~~~~~d~---~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  142 (407)
T 3ju1_A           66 LDLDMVRAMTVQLNLWKKDP---LIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYG  142 (407)
T ss_dssp             BCHHHHHHHHHHHHHHHHCT---TEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CcEEEEEecCCCCcccCCCChhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHCC
Confidence            78888899999988887643   333332 22       25665321                      12455678889


Q ss_pred             CCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCC
Q 026362          164 PKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS  205 (240)
Q Consensus       164 ~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~  205 (240)
                      .||.+.+.|.|.+.|.-|+++||-  |++.++++|-+-...-
T Consensus       143 kPvIAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~l  182 (407)
T 3ju1_A          143 KPVLVWGDGIVMGGGLGLMAGASH--KVVTETSRIAMPEVTI  182 (407)
T ss_dssp             SCEEEECCSEEETHHHHHHHHCSE--EEECTTCEEECGGGGG
T ss_pred             CCEEEEECCccccCcchHHhcCCE--EEEcCCCEEeChHhhc
Confidence            999999999999999999999997  9999999988765443

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=94.27  E-value=0.19  Score=46.03  Aligned_cols=91  Identities=14%  Similarity=0.190  Sum_probs=66.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe-----CCCccHhHH------------------HHHHHHHhhcCCCeEEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV------------------LAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN-----SPGGsV~aG------------------laIyd~L~~~~~~V~Tvv  170 (240)
                      +|.++...+...|..++.++..+-|.|.=+     |-|||+..-                  ..++..|..++.||.+.+
T Consensus        30 l~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  109 (363)
T 3bpt_A           30 LTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALI  109 (363)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            778888899998888876443222222111     235665421                  124457778899999999


Q ss_pred             cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.|.+.|.-|+++||-  |++.++++|-+-....|
T Consensus       110 ~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~G  143 (363)
T 3bpt_A          110 HGITMGGGVGLSVHGQF--RVATEKCLFAMPETAIG  143 (363)
T ss_dssp             CSEEETHHHHTTTTSSE--EEECTTCEEECCGGGTT
T ss_pred             CCEEehHHHHHHHhCCE--EEEcCCeEEeCCccccC
Confidence            99999999999999996  99999999988665544

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=94.21  E-value=0.24  Score=48.45  Aligned_cols=89  Identities=19%  Similarity=0.203  Sum_probs=66.4

Q ss_pred             cccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHH
Q 026362          112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII  181 (240)
Q Consensus       112 g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslI  181 (240)
                      |.++.+.+... ++++.+-... .-||..++|+||          |-+..+-.+..++...+.|+.|++.|-+.+.|++.
T Consensus       366 G~l~~~~a~Ka-arfi~~c~~~-~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~a  443 (555)
T 3u9r_B          366 GILFAEAAQKG-AHFIELACQR-GIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYG  443 (555)
T ss_dssp             SSBCHHHHHHH-HHHHHHHHHH-TCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHHH
T ss_pred             CccCHHHHHHH-HHHHHHHhcC-CCCEEEEecCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCccchhhHh
Confidence            66888776543 3344333222 468999999999          44567778888999999999999999999998887


Q ss_pred             HcC----CCCCcEEeccCceEeeecCC
Q 026362          182 LAG----GEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       182 l~a----G~kgkR~a~PnA~iMIHqP~  204 (240)
                      +++    ++  ..++.|+|++-+=.|.
T Consensus       444 m~~~~~~~d--~~~a~p~A~i~Vmgpe  468 (555)
T 3u9r_B          444 MCGRAYDPR--FLWMWPNARIGVMGGE  468 (555)
T ss_dssp             TTCGGGCCS--EEEECTTCEEESSCHH
T ss_pred             hcCccCCCC--eEEEcCCcEEEcCCHH
Confidence            764    44  3788899998875554

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=94.18  E-value=0.18  Score=44.14  Aligned_cols=87  Identities=13%  Similarity=0.080  Sum_probs=66.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceE-EEeCC------CccHhH-----------------HHHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILM-YLNCP------GGSIYS-----------------VLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~INSP------GGsV~a-----------------GlaIyd~L~~~~~~V~Tv  169 (240)
                      +|.++...+.+.|..++. |+   +.+ .|-+-      |+|+..                 ...++..|..++.||.+.
T Consensus        31 l~~~~~~~L~~al~~~~~-d~---vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  106 (267)
T 3hp0_A           31 INDTLIEECLQVLNQCET-ST---VTVVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISH  106 (267)
T ss_dssp             BCSHHHHHHHHHHHHHHH-SS---CCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhc-CC---CEEEEEECCCCceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            778888888888888876 32   332 33322      455532                 234667788889999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.|.|.+.|.-|+++||-  |++.++++|-+-...-|
T Consensus       107 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  141 (267)
T 3hp0_A          107 VRGKVNAGGLGFVSATDI--AIADQTASFSLSELLFG  141 (267)
T ss_dssp             ECSEEETTHHHHHHHSSE--EEECTTCEEECCGGGGT
T ss_pred             ECCEEeehHHHHHHhCCE--EEEcCCCEEECchhccC
Confidence            999999999999999997  99999999988666545

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=94.18  E-value=0.077  Score=46.41  Aligned_cols=91  Identities=10%  Similarity=0.027  Sum_probs=62.8

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE----EeCCCccHhHHHH----------------------HHHHHhhcCCCeE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYSVLA----------------------IYDCMSWIKPKVG  167 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~----INSPGGsV~aGla----------------------Iyd~L~~~~~~V~  167 (240)
                      +|.++...+.+.|..++.++..+-|.|.    .=|-|+|+..-..                      ++..|..++.||.
T Consensus        35 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  114 (274)
T 3tlf_A           35 LSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVL  114 (274)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CTTCSGGGGSCCCTTCCCTTSCCSCEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence            7788889999998888764433322221    1234666643221                      2334566778999


Q ss_pred             EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|
T Consensus       115 Aav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  151 (274)
T 3tlf_A          115 TAVNGICCGAGMDWVTTTDI--VIASEQATFFDPHVSIG  151 (274)
T ss_dssp             EEECSEEEGGGHHHHHHSSE--EEEETTCEEECCGGGGT
T ss_pred             EEECCeeehHHHHHHHhCCE--EEEcCCCEEECcccccC
Confidence            99999999999999999997  99999999987655444

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=93.96  E-value=0.11  Score=45.46  Aligned_cols=97  Identities=18%  Similarity=0.183  Sum_probs=67.2

Q ss_pred             EEEccc-----cChhHHHHHHHHHHhhhccCCCCCceEE-----EeCCCccHhHHHH----------HH--HH--HhhcC
Q 026362          108 IFIGQP-----INSMVAQRAISQLVTLATIDEDADILMY-----LNCPGGSIYSVLA----------IY--DC--MSWIK  163 (240)
Q Consensus       108 Ifl~g~-----Id~~~a~~~iaqLl~L~~~d~~~~I~l~-----INSPGGsV~aGla----------Iy--d~--L~~~~  163 (240)
                      |.|+.|     +|.++...+.+.|..++.++..+-|.|.     .=|.|+|+..-..          -+  ..  +..++
T Consensus        22 itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (267)
T 3r9t_A           22 ITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHFID  101 (267)
T ss_dssp             EEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTCGGGCGGGTTTCCCS
T ss_pred             EEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHHHhHHHHHHHHHhCC
Confidence            456655     7888899999998888764433333331     2233566643211          00  11  12567


Q ss_pred             CCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          164 PKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       164 ~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .||.+.+.|.|.+.|.-|+++||-  |++.++++|-+-...-|
T Consensus       102 kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  142 (267)
T 3r9t_A          102 KPTIAAVNGTALGGGTELALASDL--VVADERAQFGLPEVKRG  142 (267)
T ss_dssp             SCEEEEECSEECTHHHHHHHHSSE--EEEETTCEECCGGGGTT
T ss_pred             CCEEEEECCEEEhHHHHHHHhCCE--EEEcCCCEEECcccccC
Confidence            899999999999999999999997  99999999987665544

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=93.93  E-value=0.46  Score=42.36  Aligned_cols=91  Identities=10%  Similarity=-0.051  Sum_probs=63.6

Q ss_pred             ccChhHHHHHHHHHHhhhcc----CCCCCceEEEeC------CCccHhHHH----------------HHHHHHhh-----
Q 026362          113 PINSMVAQRAISQLVTLATI----DEDADILMYLNC------PGGSIYSVL----------------AIYDCMSW-----  161 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~----d~~~~I~l~INS------PGGsV~aGl----------------aIyd~L~~-----  161 (240)
                      .+|.++...+.+.|..++..    |++-.+ |.|-+      -|+|+..-.                .+++.++.     
T Consensus        59 al~~~m~~eL~~al~~~~~d~~~~d~~vr~-vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (305)
T 3m6n_A           59 CFSTRLVDDITGYQTNLGQRLNTAGVLAPH-VVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGL  137 (305)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHHHHHTCSSCE-EEEEESSSSSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGG
T ss_pred             CCCHHHHHHHHHHHHHHHhcccccCCCeEE-EEEECCCCCeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence            38899999999998888763    222222 22333      345554211                23334433     


Q ss_pred             -cCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          162 -IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       162 -~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                       ++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-....|
T Consensus       138 ~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~G  181 (305)
T 3m6n_A          138 GARAHSIALVQGNALGGGFEAALSCHT--IIAEEGVMMGLPEVLFD  181 (305)
T ss_dssp             GTTCEEEEEECSCEETHHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             CCCCCEEEEECCEeehHHHHHHHhCCE--EEEcCCCEEECchhccC
Confidence             47899999999999999999999997  99999999987655444

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=93.71  E-value=0.33  Score=47.78  Aligned_cols=100  Identities=12%  Similarity=0.095  Sum_probs=71.6

Q ss_pred             cCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcce
Q 026362          104 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGV  173 (240)
Q Consensus       104 ~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~  173 (240)
                      ++++...+|.++.+.+..... ++.|-... +-||..++|.||          |-+..|-.+..++...+.|+.|++.|.
T Consensus       379 ~~~~~~~~G~l~~~~a~Kaar-fi~lcd~f-~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~itvI~g~  456 (588)
T 3gf3_A          379 KQNSVGIGGKLYRQGLIKMNE-FVTLCARD-RIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITIRK  456 (588)
T ss_dssp             SSSCEEETTEECHHHHHHHHH-HHHHHHHT-TCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEESSE
T ss_pred             hhhhhccCCCcCHHHHHHHHH-HHHHhhhc-CCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            345666788899887654332 33333222 468999999998          556678889999999999999999999


Q ss_pred             echHHHHHHcCCCCC----cEEeccCceEeeecCCC
Q 026362          174 AASQAAIILAGGEKG----MRYAMPNARIMLNQPQS  205 (240)
Q Consensus       174 AaS~aslIl~aG~kg----kR~a~PnA~iMIHqP~~  205 (240)
                      +.+.|.+.+++-.-+    ..++.|+|++-+=.|.+
T Consensus       457 ~~Ggg~~am~~~~~~~~~~~~~awp~A~~sVm~pEg  492 (588)
T 3gf3_A          457 ASAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPGET  492 (588)
T ss_dssp             EETTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHH
T ss_pred             ccHHHHHHhcccccCCccceEEECCCceEEeCCHHH
Confidence            999877666541111    35778999988866654

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=93.70  E-value=0.05  Score=48.58  Aligned_cols=87  Identities=10%  Similarity=-0.027  Sum_probs=60.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeC------CCccHhHHH-----------------------HHHHHHhhcCC
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNC------PGGSIYSVL-----------------------AIYDCMSWIKP  164 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INS------PGGsV~aGl-----------------------aIyd~L~~~~~  164 (240)
                      +|.++...+.+.|..++.++..+-  |.|-+      -|+|+..-.                       .++..|..++.
T Consensus        54 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  131 (298)
T 3qre_A           54 WGPDLAAGFYAAIDRAEADPGIRV--IVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRK  131 (298)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCE--EEEEESTTCSEECC-----------------------------CCTTGGGGSSS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCCcccCcCHHHHhhccccccccccchhHHHHHHHHHHHHHHHHhCCC
Confidence            788888999999888876443222  22222      244443211                       12334667788


Q ss_pred             CeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          165 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       165 ~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      ||.+.+.|.|.+.|.-|+++||-  |++.++++|-+-...
T Consensus       132 PvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~  169 (298)
T 3qre_A          132 PVIAAINGPCVGIGLTQALMCDV--RFAAAGAKFAAVFAR  169 (298)
T ss_dssp             CEEEEECSCEETHHHHHHHHSSE--EEEETTCEEECCCCH
T ss_pred             CEEEEECCceeecchHHHhhCCE--EEEcCCCEEECcccc
Confidence            99999999999999999999997  999999998876544

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=93.69  E-value=0.4  Score=45.56  Aligned_cols=45  Identities=20%  Similarity=0.116  Sum_probs=40.1

Q ss_pred             hcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       161 ~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      .++.||.+.+.|.|.+.|.-|+++||-  |++.++++|-+-....|.
T Consensus       282 ~~pkPvIAAVnG~A~GGG~eLALaCDi--rIAae~A~Fglpev~lGl  326 (440)
T 2np9_A          282 RIEKPWVAAVDGFAIGGGAQLLLVFDR--VLASSDAYFSLPAAKEGI  326 (440)
T ss_dssp             EECCCEEEEECSEEETHHHHHGGGCSE--EEEETTCEEECCCTTTCC
T ss_pred             cCCCCEEEEECCcccccchHHHhhCCE--EEEcCCCEEECchhccCc
Confidence            467899999999999999999999997  999999999987776554

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=93.19  E-value=0.12  Score=44.93  Aligned_cols=90  Identities=12%  Similarity=0.114  Sum_probs=62.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEE----EeCCCccHhHHHH----------HHHHHhhcCCCeEEEEcceechHHH
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYSVLA----------IYDCMSWIKPKVGTVCFGVAASQAA  179 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~----INSPGGsV~aGla----------Iyd~L~~~~~~V~Tvv~G~AaS~as  179 (240)
                      +|.++...+.+.|..++.++..+-|.|.    .=|-|+|+..-..          -+..+ .++.||.+.+.|.|.+.|.
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~-~~~kPvIAav~G~a~GgG~  109 (256)
T 3trr_A           31 VNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGLGFTNV-PPRKPIIAAVEGFALAGGT  109 (256)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEETTEETTSSS-CCSSCEEEEECSBCCTHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhhhhhhHHHh-cCCCCEEEEECCeeeechh
Confidence            7788888999998888764433322221    1244566643211          01223 5567999999999999999


Q ss_pred             HHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          180 IILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       180 lIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      -|+++||-  |++.++++|-+-...-|
T Consensus       110 ~lalacD~--~ia~~~a~f~~pe~~~G  134 (256)
T 3trr_A          110 ELVLSCDL--VVAGRSAKFGIPEVKRG  134 (256)
T ss_dssp             HHHHTSSE--EEEETTCEECCCGGGGT
T ss_pred             HHHHhCCE--EEECCCCEEEehhhccC
Confidence            99999997  99999999987655544

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=93.18  E-value=0.21  Score=43.63  Aligned_cols=88  Identities=11%  Similarity=0.116  Sum_probs=59.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEe------CCCccHhHHHH----------H-HHHHhhcCCCeEEEEcceech
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLN------CPGGSIYSVLA----------I-YDCMSWIKPKVGTVCFGVAAS  176 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN------SPGGsV~aGla----------I-yd~L~~~~~~V~Tvv~G~AaS  176 (240)
                      +|.++...+.+.|..++.++..+ + |.|-      |-|+|+..-..          + +..+.. +.||.+.+.|.|.+
T Consensus        39 l~~~~~~~L~~al~~~~~d~~vr-~-vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~-~kPvIAav~G~a~G  115 (265)
T 3qxi_A           39 VNAAVSRALADAMDRLDADAGLS-V-GILTGAGGSFCAGMDLKAFARGENVVVEGRGLGFTERPP-AKPLIAAVEGYALA  115 (265)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCC-E-EEEEESTTCCCCSBC-------CCCEETTTEETTTTSCC-SSCEEEEECSEEET
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcE-E-EEEECCCCCeeCCCChhhhhccchhhhhhhhhhHHHhhC-CCCEEEEECCceeH
Confidence            78888899999888887643322 2 2233      33455543111          0 111222 67999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          177 QAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .|.-|+++||-  |++.++++|.+-....|
T Consensus       116 gG~~lalacD~--ria~~~a~f~~pe~~~G  143 (265)
T 3qxi_A          116 GGTELALATDL--IVAARDSAFGIPEVKRG  143 (265)
T ss_dssp             HHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             HHHHHHHhCCE--EEEcCCCEEECcccccC
Confidence            99999999997  99999999987666544

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=93.18  E-value=0.094  Score=45.81  Aligned_cols=89  Identities=10%  Similarity=0.065  Sum_probs=61.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEE----eCCCccHhHHH-------------HHHHHHhhcCCCeEEEEcceech
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSVL-------------AIYDCMSWIKPKVGTVCFGVAAS  176 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I----NSPGGsV~aGl-------------aIyd~L~~~~~~V~Tvv~G~AaS  176 (240)
                      +|.++...+.+.|..++.++..+-|.|.=    =|-|+|+..-.             .++..+..++.||.+.+.|.|.+
T Consensus        35 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  114 (262)
T 3r9q_A           35 VDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHGPGPMGPSRLRLSKPVIAAISGHAVA  114 (262)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCTTSSCTTSSTTCCCSSCEEEEECSEEET
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHHhhhhHHHHHHHhCCCCEEEEECCeeeh
Confidence            78888999999988887644322222211    13345543211             12223446778999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          177 QAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      .|.-|+++||-  |++.++++|-+-...
T Consensus       115 gG~~lalacD~--ria~~~a~f~~pe~~  140 (262)
T 3r9q_A          115 GGIELALWCDL--RVVEEDAVLGVFCRR  140 (262)
T ss_dssp             HHHHHHHHSSE--EEEETTCEEECTHHH
T ss_pred             hhhHHHHhCCE--EEEeCCCEEecchhc
Confidence            99999999997  999999998875443

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=91.57  E-value=0.65  Score=46.17  Aligned_cols=89  Identities=12%  Similarity=0.111  Sum_probs=65.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeC------CCccHhH------------------HHHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNC------PGGSIYS------------------VLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INS------PGGsV~a------------------GlaIyd~L~~~~~~V~Tv  169 (240)
                      +|.++...+.+.|..++.++..+-  |.|-+      -|+|+..                  ...+++.|..++.||.+.
T Consensus        32 l~~~~~~~L~~al~~~~~d~~vr~--vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  109 (715)
T 1wdk_A           32 FNRLTLNELRQAVDAIKADASVKG--VIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAA  109 (715)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCE--EEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCeEeCCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            567788888888888876443222  23333      2334321                  224566778889999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.|.|.+.|.-|+++||-  |++.++++|-+-...-|
T Consensus       110 v~G~a~GgG~elalacD~--ria~~~a~fglpev~lG  144 (715)
T 1wdk_A          110 INGIALGGGLEMCLAADF--RVMADSAKIGLPEVKLG  144 (715)
T ss_dssp             ECSCEETHHHHHHHTSSE--EEEETTCEEECGGGGGT
T ss_pred             ECCEeeHHHHHHHHHCCE--EEEeCCCEEeChhhccC
Confidence            999999999999999996  99999999887665544

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=91.56  E-value=0.54  Score=42.05  Aligned_cols=91  Identities=8%  Similarity=0.035  Sum_probs=63.4

Q ss_pred             EccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHH-------HHHHHh---hcCCCeEEEEcceechHHH
Q 026362          110 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA-------IYDCMS---WIKPKVGTVCFGVAASQAA  179 (240)
Q Consensus       110 l~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGla-------Iyd~L~---~~~~~V~Tvv~G~AaS~as  179 (240)
                      ++|-++.+.++.+..-+. +..+. .-|+..+++|||....+|..       |...+.   ....|..+++.|-+.+.++
T Consensus       133 ~gGs~g~~~~~K~~r~ie-~A~~~-~lPlI~l~dsgGar~qEGi~sl~q~aki~~~l~~~s~~~vP~Isvv~g~~~GG~~  210 (285)
T 2f9i_B          133 RMGSMGSVIGEKICRIID-YCTEN-RLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVS  210 (285)
T ss_dssp             GGGCCCHHHHHHHHHHHH-HHHHT-TCCEEEEEEECSCCGGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHH
T ss_pred             ccCcCCHHHHHHHHHHHH-HHHHc-CCCEEEEEeCCCcchhhhhhhHhHHHHHHHHHHHHHcCCCCEEEEEeCCccHHHH
Confidence            346788887777666544 43333 46899999999998877644       233333   3457999999999977776


Q ss_pred             HHH-cCCCCCcEEeccCceEeeecCC
Q 026362          180 IIL-AGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       180 lIl-~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      ..+ +.|+.  .++.|+|++-+=-|.
T Consensus       211 as~a~~~D~--i~a~p~A~i~~aGP~  234 (285)
T 2f9i_B          211 ASFASVGDI--NLSEPKALIGFAGRR  234 (285)
T ss_dssp             TTGGGCCSE--EEECTTCBEESSCHH
T ss_pred             HHhhhCCCE--EEEeCCcEEEEcCHH
Confidence            664 45664  678899998885554

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=90.94  E-value=1.1  Score=45.09  Aligned_cols=89  Identities=17%  Similarity=0.133  Sum_probs=68.6

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCCC------ccHh---------HHHHHHHHHhhcCCCeEEEEcceechHH
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCPG------GSIY---------SVLAIYDCMSWIKPKVGTVCFGVAASQA  178 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG------GsV~---------aGlaIyd~L~~~~~~V~Tvv~G~AaS~a  178 (240)
                      +|.++...+.+.|..++.++..+  -|.|-+-|      +|+.         +.-.+++.|..++.||.+.+.|.|...|
T Consensus        44 l~~~~~~~L~~al~~~~~d~~vr--~vVltg~g~~F~aGaDl~~~~~~~~~~~~~~~~~~i~~~~kPvIAai~G~a~GGG  121 (742)
T 3zwc_A           44 VSPTVIREVRNGLQKAGSDHTVK--AIVICGANGNFCAGADIHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGG  121 (742)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCC--EEEEEESTTCSBCCBCSSSCCSSCSCSHHHHHHHHHHHCSSCEEEEECSEEETHH
T ss_pred             CCHHHHHHHHHHHHHHhhCCCCe--EEEEECCCCccccCcChHhhhccChhHHHHHHHHHHHhCCCCEEEEECccchHHH
Confidence            78888889999888887644322  23333333      3332         3456889999999999999999999999


Q ss_pred             HHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          179 AIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       179 slIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .-|+++||-  |++.++++|-+-...-|
T Consensus       122 ~elalacD~--ria~~~a~fg~pev~lG  147 (742)
T 3zwc_A          122 LELALGCHY--RIANAKARVGLPEVTLG  147 (742)
T ss_dssp             HHHHHTSSE--EEEETTCEEECGGGGGT
T ss_pred             HHHHHhcCE--EEEcCCCEEECcccCcc
Confidence            999999996  99999999987665545

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=90.09  E-value=1  Score=45.85  Aligned_cols=101  Identities=15%  Similarity=0.126  Sum_probs=72.2

Q ss_pred             hccCcEE-EEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEE
Q 026362          102 LFRNRII-FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVC  170 (240)
Q Consensus       102 L~~~RII-fl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv  170 (240)
                      -.++++. +++|.++.+.+.....-+...+  ...-||..++|.||          |-+.+|-.+.+++...+.|+.|++
T Consensus       451 ~~~e~~~~~~gG~l~~~~a~KaarfI~~cd--~f~iPlv~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itvI  528 (793)
T 2x24_A          451 DSEAKIIQQAGQVWFPDSAYKTAQAIKDFN--REKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYI  528 (793)
T ss_dssp             TCCCEEEEECTTEECHHHHHHHHHHHHHHH--TTTCCEEEECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             chhhhhhhhcCCcccHHHHHHHHHHHHHhc--cCCCCEEEEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEEE
Confidence            3345555 4478999987765444333333  23568999999998          556688889999999999999999


Q ss_pred             --cceechHHHHHHcCCCCCc----EEeccCceEeeecCCC
Q 026362          171 --FGVAASQAAIILAGGEKGM----RYAMPNARIMLNQPQS  205 (240)
Q Consensus       171 --~G~AaS~aslIl~aG~kgk----R~a~PnA~iMIHqP~~  205 (240)
                        .|.+.+ |++++++..-+-    .++.|+|++-+=.|.+
T Consensus       529 ~r~Ge~~G-Ga~~~~~~~~~~d~~ev~Awp~A~~~VM~pEg  568 (793)
T 2x24_A          529 PPYAEVRG-GSWAVMDTSINPLCIEMYADRESRASVLEPEG  568 (793)
T ss_dssp             CTTCEEEH-HHHHTTCGGGSTTTEEEEEETTCEEESSCHHH
T ss_pred             ecCCcccc-hhHHhhhcccCccHHHHhhhccCEEEecCHHH
Confidence              888754 677766532222    3788999998866664

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=89.19  E-value=1.6  Score=44.20  Aligned_cols=103  Identities=18%  Similarity=0.093  Sum_probs=72.9

Q ss_pred             hhccCcEE-EEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEE
Q 026362          101 VLFRNRII-FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       101 ~L~~~RII-fl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tv  169 (240)
                      .-.++++. ..+|.++.+.+.... +++.+-.....-||..++|.||          |-+.+|-.+.+++...+.|+.|+
T Consensus       435 p~~~e~~~~~~gG~l~pe~a~KaA-rfI~lcd~~f~iPLv~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP~itV  513 (758)
T 3k8x_A          435 PNSAETLIQEPGQVWHPNSAFKTA-QAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIY  513 (758)
T ss_dssp             TTCCCEEEEECTTEECHHHHHHHH-HHHHHHHHTSCCCEEECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             cchhhhHHhhcCCCCCHHHHHHHH-HHHHHhhhccCCCEEEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCCEEEE
Confidence            34456665 456899998876554 3443333312468999999998          45668888999999999999999


Q ss_pred             Ec--ceechHHHHHHcCCC--CCc--EEeccCceEeeecCCC
Q 026362          170 CF--GVAASQAAIILAGGE--KGM--RYAMPNARIMLNQPQS  205 (240)
Q Consensus       170 v~--G~AaS~aslIl~aG~--kgk--R~a~PnA~iMIHqP~~  205 (240)
                      +.  |.+.+ |+++.+++.  ...  .++.|+|++-+=.|.+
T Consensus       514 I~RkGe~~G-GA~~am~~~~~ad~~~v~Awp~A~isVM~pEg  554 (758)
T 3k8x_A          514 IPPTGELRG-GSWVVVDPTINADQMEMYADVNARAGVLEPQG  554 (758)
T ss_dssp             ECTTCEEET-HHHHTTCGGGSTTTEEEEEETTCEEESSCHHH
T ss_pred             EecCCccch-HHHHHhCcccCCCHHHHhcCCCCEEEccCHHH
Confidence            99  99876 555555531  223  7888999998866654

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=86.57  E-value=0.49  Score=47.21  Aligned_cols=89  Identities=16%  Similarity=0.081  Sum_probs=60.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeC------CCccHhHH------------------HHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNC------PGGSIYSV------------------LAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INS------PGGsV~aG------------------laIyd~L~~~~~~V~Tv  169 (240)
                      +|.++...+.+.|..++.++..+-  |.|-+      -|+|+..-                  ..+++.|..++.||.+.
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr~--vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  108 (725)
T 2wtb_A           31 LSFDVLYNLKSNYEEALSRNDVKA--IVITGAKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAA  108 (725)
T ss_dssp             CCHHHHHHHHHHHHHHTTCTTCCE--EEEEESSSCCBCSSCC------------CCSSSHHHHHCCCCCCCTSSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCcccCCcCHHHHhcccchhhhhHHHHHHHHHHHHHHHHhCcCcEEEE
Confidence            677888888888888875433222  22233      34444210                  11223345567899999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.|.|.+.|.-|+++||-  |++.++++|-+-...-|
T Consensus       109 v~G~a~GgG~elalacD~--ria~~~a~fglpev~lG  143 (725)
T 2wtb_A          109 IDGLALGGGLELAMACHA--RISAPAAQLGLPELQLG  143 (725)
T ss_dssp             ECSEEETHHHHHHHHSSE--EEECTTCEEECCGGGGT
T ss_pred             ECCccCcccHHHHHhCCE--EEEcCCCEEeCchhccC
Confidence            999999999999999996  99999999877655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1yg6a1	183	c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Es	1e-44
d1tg6a1	193	c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Hum	3e-39
d2cbya1	179	c.14.1.1 (A:15-193) Clp protease, ClpP subunit {My	4e-36
d1y7oa1	192	c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Str	3e-30
d2f6ia1	190	c.14.1.1 (A:177-366) Clp protease, ClpP subunit {P	4e-29

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

 Score =  146 bits (369), Expect = 1e-44
 Identities = 50/140 (35%), Positives = 81/140 (57%)

Query: 97  DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
           D+ S L + R+IF+   +   +A   ++Q++ L   + + DI +Y+N PGG I + ++IY
Sbjct: 8   DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIY 67

Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
           D M +IKP V T+C G AAS  A +L  G KG R+ +PN+R+M++QP  G  G   D++ 
Sbjct: 68  DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEI 127

Query: 217 QVNEAVISRHVSLSFLLLHT 236
              E +  +      + LHT
Sbjct: 128 HAREILKVKGRMNELMALHT 147

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score =  132 bits (333), Expect = 3e-39
 Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 4/157 (2%)

Query: 84  PLMPAVM--TPGG--PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
           PL+P V+  T  G    D+ S L R RI+ +  PI+  VA   I+QL+ L +      I 
Sbjct: 1   PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIH 60

Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
           MY+N PGG + + LAIYD M +I   + T C G AAS  +++LA G  GMR+++PN+RIM
Sbjct: 61  MYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIM 120

Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
           ++QP  G+ G   D+  Q  E +  +    +    HT
Sbjct: 121 IHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHT 157

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  123 bits (311), Expect = 4e-36
 Identities = 51/137 (37%), Positives = 73/137 (53%)

Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 159
             L   RIIF+G  +N  +A R  +Q++ LA  D   DI +Y+N PGGSI + +AIYD M
Sbjct: 8   ERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTM 67

Query: 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 219
                 + T   G+AAS    +LA G KG RYA+P+ARI+++QP  G  G   D+  Q  
Sbjct: 68  VLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAE 127

Query: 220 EAVISRHVSLSFLLLHT 236
           +  + +          T
Sbjct: 128 QFAVIKKEMFRLNAEFT 144

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} Length = 192

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

 Score =  109 bits (273), Expect = 3e-30
 Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 4/129 (3%)

Query: 86  MPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
           +P V+  T  G    D+ S L ++RII +  P+   +A   I+QL+ L   D   DI +Y
Sbjct: 1   IPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLY 60

Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
           +N PGGS+ + LAI D M++IK  V T+  G+AAS   +I + G KG R+ +PNA  M++
Sbjct: 61  VNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIH 120

Query: 202 QPQSGSGGH 210
           QP  G+GG 
Sbjct: 121 QPMGGTGGG 129

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} Length = 190

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

 Score =  106 bits (265), Expect = 4e-29
 Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 1/145 (0%)

Query: 92  PGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYS 151
                D+    F+ RII++   IN   A   ISQL+ L  I+ + DI +Y+N PGGSI  
Sbjct: 5   KDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSINE 63

Query: 152 VLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHV 211
            LAI D  ++IK  + T+ FG+ AS A++ILA G+KG R ++PN RIM++QP   + GH 
Sbjct: 64  GLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHP 123

Query: 212 EDVKRQVNEAVISRHVSLSFLLLHT 236
           +D++ Q  E +  + +   +L   T
Sbjct: 124 QDIEIQTKEILYLKKLLYHYLSSFT 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	100.0
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	100.0
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	96.42
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	96.3
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	96.08
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	96.05
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	95.94
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	95.86
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	95.82
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	95.82
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	95.7
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	95.3
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	95.26
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	95.19
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	95.09
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	94.96
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	94.87
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	94.69
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	94.65
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	94.39
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	94.14
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	94.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	91.97
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	89.16
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	85.86

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=5.1e-48  Score=329.94  Aligned_cols=156  Identities=38%  Similarity=0.627  Sum_probs=148.0

Q ss_pred             Cccceee--CCCC--CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHH
Q 026362           84 PLMPAVM--TPGG--PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM  159 (240)
Q Consensus        84 ~~~p~~~--~~~~--~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L  159 (240)
                      |++|.||  ++.|  ++|+|++||++|||||+|+||+++++.++++|++|+.++++++|+||||||||++++|++|||+|
T Consensus         1 p~~p~~~~~~~~~~~~~Di~s~l~~~Riifl~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i   80 (193)
T d1tg6a1           1 PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTM   80 (193)
T ss_dssp             CCCCBCC---------CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHH
T ss_pred             CCCCEEEeecCCCchhhhHhHHHhccCEEEECCEEchHHHHHHHHHHHHhcccCCCcEEEEEeecCcccHHHHHHHHHHH
Confidence            5678888  4433  89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       160 ~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      ++++++|+|+|.|+|+|||++|+++|++|+|+++|||+||||||+++++|++.|+++++++++++++.+.++|+++||++
T Consensus        81 ~~~~~~V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~  160 (193)
T d1tg6a1          81 QYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQS  160 (193)
T ss_dssp             HHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HhhcCceEEEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=1.7e-45  Score=313.34  Aligned_cols=154  Identities=36%  Similarity=0.606  Sum_probs=134.4

Q ss_pred             cceee--CCCC--CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhh
Q 026362           86 MPAVM--TPGG--PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW  161 (240)
Q Consensus        86 ~p~~~--~~~~--~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~  161 (240)
                      +|.|+  |++|  +.|||++||++|||||+|+||+++++.++++|++|+.++++++|+||||||||+|++|++|||+|++
T Consensus         1 ~p~v~~~~~~~~~~~di~s~Ll~~rii~l~g~I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS~GG~v~~glai~d~i~~   80 (192)
T d1y7oa1           1 IPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNF   80 (192)
T ss_dssp             CCEECC-------CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCcchhhhhhHHhccCEEEECCEEchHHHHHHHHHHHHhhhhcccCceeeeecCCCCCHHHHHHHHHHHHh
Confidence            46676  5555  7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGH--VEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       162 ~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~--a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      ++++|+|+|.|.|+|||++|++||++|+|+++|||++|||||+++..|+  ..|++.+++++.++++.+.++|+++||++
T Consensus        81 ~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~  160 (192)
T d1y7oa1          81 IKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQS  160 (192)
T ss_dssp             SSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCcceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999886  45789999999999999999999999987

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=7e-44  Score=299.73  Aligned_cols=143  Identities=36%  Similarity=0.577  Sum_probs=131.1

Q ss_pred             ChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceech
Q 026362           97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS  176 (240)
Q Consensus        97 dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS  176 (240)
                      +||++|+++|||||+|+||++++++++++|++|+.+++.++|+||||||||+|++|++|||+|+.++.+|+|+|.|.|+|
T Consensus         5 ~i~~~l~~~rii~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~gl~i~d~i~~~~~~v~t~~~G~aaS   84 (179)
T d2cbya1           5 SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAAS   84 (179)
T ss_dssp             HHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHCSSCEEEEEEEEEET
T ss_pred             HHHHHHHhCCEEEECCEECHHHHHHHHHHHHHHhccCCCCeEEEEeeCCCCCHHHHHHHHHHHHhhccceeeehhhhhhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      ||++|+++|+||+|+++|||++|||||+++++|++.|++..+++++++++.+.++|+++||++
T Consensus        85 ~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~  147 (179)
T d2cbya1          85 MGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQP  147 (179)
T ss_dssp             HHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999999999999999987

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-43  Score=295.06  Aligned_cols=145  Identities=34%  Similarity=0.659  Sum_probs=142.8

Q ss_pred             CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      .+|||++|+++|+|||+|+||+++++.++++|++|+.++++++|+||||||||+|++|++|||+|+.++.+|+|+|.|.|
T Consensus         6 ~~di~s~L~~~riI~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~~~~~v~tv~~G~a   85 (183)
T d1yg6a1           6 SFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQA   85 (183)
T ss_dssp             CCBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred             hhhHhHHHhccCEEEECCEECHHHHHHHHHHHHHhhhhccCCceEEEEeCCCccHHHHHHHHHHHHhCCCCEEEEEEEEe
Confidence            79999999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +|||++|+++|++|+|+++|||++|||||+++++|++.|++..+++++++++.+.++|+++||++
T Consensus        86 aS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~  150 (183)
T d1yg6a1          86 ASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQS  150 (183)
T ss_dssp             ETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999987

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=6.7e-42  Score=290.53  Aligned_cols=144  Identities=39%  Similarity=0.637  Sum_probs=132.8

Q ss_pred             CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362           95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus        95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      +.|++++||++|||||+|+||+++++.++++|++|+.++ .++|+||||||||+|++|++|||+|+.++++|+|+|.|.|
T Consensus         8 ~~d~~~~l~~~rii~l~g~Id~~~~~~~i~~l~~l~~~~-~~~I~l~INS~GG~v~~g~ai~d~i~~~~~~v~tv~~G~a   86 (190)
T d2f6ia1           8 KKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLV   86 (190)
T ss_dssp             SHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHC-CSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred             hhhHHHHHHcCcEEEECCeeCHHHHHHHHHHHHHHhccC-CCCeEEEEeCchhhhhHHHHHHHHHHhhCCceEEEEeccc
Confidence            689999999999999999999999999999999999877 4689999999999999999999999999999999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND  239 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~  239 (240)
                      +|||++|+++|++|+|+++||+++|+|||+++.+|+..|++..+++++++++.+.++|+++||++
T Consensus        87 aS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~  151 (190)
T d2f6ia1          87 ASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQT  151 (190)
T ss_dssp             CHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999987

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.42  E-value=0.012  Score=48.94  Aligned_cols=87  Identities=8%  Similarity=0.120  Sum_probs=67.4

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHhHH--------------------------HHHHHHHhh
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIYSV--------------------------LAIYDCMSW  161 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~aG--------------------------laIyd~L~~  161 (240)
                      +|.++..++...|..++.++.. . -|.|.+.      |+++...                          ..+++.|..
T Consensus        28 ls~~m~~el~~~l~~~~~d~~v-~-~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  105 (275)
T d1dcia_          28 MNRAFWRELVECFQKISKDSDC-R-AVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEK  105 (275)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTC-C-EEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCc-e-EEEEeccccccccCccHHHhhhcccccccccccchhhhhccchhhhHHHHHHHHh
Confidence            8888999999999988764322 2 2444444      5665432                          246778899


Q ss_pred             cCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       162 ~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      .+.||.+.+.|.|...|.-|+++||-  |++.++++|-+....
T Consensus       106 ~~kPvIaav~G~a~GgG~~lal~~D~--ria~~~a~f~~pe~~  146 (275)
T d1dcia_         106 CPKPVIAAIHGGCIGGGVDLISACDI--RYCTQDAFFQVKEVD  146 (275)
T ss_dssp             SSSCEEEEECSEEETHHHHHHTTSSE--EEEETTCEEECCGGG
T ss_pred             cCCCEEEEEeeEeehhhHHHHhhcCc--hhhccCccccchhcc
Confidence            99999999999999999999999997  999999998875544

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0031  Score=55.53  Aligned_cols=70  Identities=17%  Similarity=0.256  Sum_probs=58.9

Q ss_pred             CCCceEEEeCCCc----------cHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          135 DADILMYLNCPGG----------SIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       135 ~~~I~l~INSPGG----------sV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      .-||..+|++||-          -..++-.....|-..+.|+.+++.|.+.|.|++.++.++.  ..+++||.+.+=.|.
T Consensus       151 ~~Pii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d~--v~m~~~a~~svispE  228 (316)
T d2f9ya1         151 KMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDK--VNMLQYSTYSVISPE  228 (316)
T ss_dssp             TCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSE--EEECTTCEEESSCHH
T ss_pred             CcceEEEEecCcccCCcccccccHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhhhH--HHHHhhhHHhhccch
Confidence            4689999999994          4456666666777788999999999999999999999985  889999999987777


Q ss_pred             CC
Q 026362          205 SG  206 (240)
Q Consensus       205 ~g  206 (240)
                      +.
T Consensus       229 g~  230 (316)
T d2f9ya1         229 GC  230 (316)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.022  Score=46.93  Aligned_cols=88  Identities=18%  Similarity=0.186  Sum_probs=67.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCCCc------cHhH-------------------HHHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCPGG------SIYS-------------------VLAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGG------sV~a-------------------GlaIyd~L~~~~~~V~T  168 (240)
                      +|.++..++...|..++.++   .+.|.+.+-|+      ++..                   ...++..|..++.||.+
T Consensus        27 ls~~~~~~l~~~l~~~~~d~---~v~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa  103 (245)
T d2f6qa1          27 INTEMYHEIMRALKAASKDD---SIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA  103 (245)
T ss_dssp             BCHHHHHHHHHHHHHHHHSS---CSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCC---ceEEeecCCCccccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceEE
Confidence            78888899999888887532   35566655443      2211                   12466778889999999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.|...|.-+++++|-  |++.++++|.+....-|
T Consensus       104 ~v~G~a~GgG~~la~~~D~--~ia~~~a~f~~pe~~~G  139 (245)
T d2f6qa1         104 VVNGPAVGISVTLLGLFDA--VYASDRATFHTPFSHLG  139 (245)
T ss_dssp             EECSCEETHHHHGGGGCSE--EEEETTCEEECCTGGGT
T ss_pred             EECCccccccccchhhhhh--hhhhccCeEecccccCC
Confidence            9999999999999999996  99999999998665544

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=96.05  E-value=0.018  Score=47.02  Aligned_cols=89  Identities=9%  Similarity=0.075  Sum_probs=67.8

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCce-EEEeCCCcc-------Hh----------------HHHHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCPGGS-------IY----------------SVLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSPGGs-------V~----------------aGlaIyd~L~~~~~~V~Tv  169 (240)
                      +|.++...+.+.+..++.+   +++. +.|-+-||.       +.                ....++..|+.++.||.+.
T Consensus        24 l~~~~~~~l~~~l~~~~~d---~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaa  100 (230)
T d2a7ka1          24 FSRTLETSVKDALARANAD---DSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAA  100 (230)
T ss_dssp             CCHHHHHHHHHHHHHHHHC---TTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhC---Ccccccceeccchhhhhhhcccccccccccccccccchhhhhhhhhcccchhcceeee
Confidence            7888888898888877753   2454 444555532       21                2344677888999999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      +.|.|...|.-|++++|-  |++.++++|-+-....|.
T Consensus       101 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G~  136 (230)
T d2a7ka1         101 VDGYAIGMGFQFALMFDQ--RLMASTANFVMPELKHGI  136 (230)
T ss_dssp             ECSEEETHHHHHHTTSSE--EEEETTCEEECCGGGGTC
T ss_pred             cccccccccccchhccch--hhccccchhhhccccccc
Confidence            999999999999999997  999999998876555443

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.029  Score=46.60  Aligned_cols=89  Identities=10%  Similarity=0.094  Sum_probs=67.5

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCC-------CccH---------------hHHHHHHHHHhhcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCP-------GGSI---------------YSVLAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP-------GGsV---------------~aGlaIyd~L~~~~~~V~Tvv~  171 (240)
                      +|.++...+...+..++.++..+  .|.|-+-       |++.               .....++..|..++.||.+.+.
T Consensus        30 l~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~  107 (266)
T d1hzda_          30 LSKNLIKMLSKAVDALKSDKKVR--TIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAID  107 (266)
T ss_dssp             BCTTHHHHHHHHHHHHHHCSSCS--EEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEES
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcc--eEEEeccccccccccccccccccccchhhhhhhhHHHHHHHHHhcCCcccccccc
Confidence            78888999999988887644322  2233332       2332               1344578888899999999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      |.|...|.-|++++|-  |++.++++|-+..-.-|
T Consensus       108 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G  140 (266)
T d1hzda_         108 GLALGGGLELALACDI--RVAASSAKMGLVETKLA  140 (266)
T ss_dssp             EEEETHHHHHHHHSSE--EEEETTCEEECCGGGGT
T ss_pred             cccccccceeccccce--eeecCCcEEeeccccee
Confidence            9999999999999997  99999999987665544

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.86  E-value=0.018  Score=49.01  Aligned_cols=94  Identities=21%  Similarity=0.201  Sum_probs=70.3

Q ss_pred             ccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHHH
Q 026362          111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI  180 (240)
Q Consensus       111 ~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~asl  180 (240)
                      +|.++.+.+.....-+...+. . +=+|..++|+||          |-+.+|-.+..++...+.|..+++.|.+.+.|.+
T Consensus        80 ~G~~~~~~a~Kaa~fi~lc~~-~-~iPli~l~DtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~  157 (264)
T d1vrga2          80 AGVLDIDSSDKAARFIRFLDA-F-NIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYI  157 (264)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHH-T-TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             ccchhhhhHHHHHHHHHHHHH-h-CCceEEEeecccccccHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhh
Confidence            477999877655544333333 2 358999999999          5567888999999999999999999999998887


Q ss_pred             HHcCC--CCCcEEeccCceEeeecCCCC
Q 026362          181 ILAGG--EKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       181 Il~aG--~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+++.  .....++.|+|++.+=.|.+.
T Consensus       158 am~~~~~~~d~~~awP~a~~~vm~pe~a  185 (264)
T d1vrga2         158 AMGSKHLGADMVLAWPSAEIAVMGPEGA  185 (264)
T ss_dssp             HTTCGGGTCSEEEECTTCEEESSCHHHH
T ss_pred             hccCCccCCCeeeeccceeEEecCHHHh
Confidence            77642  122477788888887666643

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=95.82  E-value=0.02  Score=46.72  Aligned_cols=90  Identities=13%  Similarity=0.082  Sum_probs=68.0

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHh------------------HHHHHHHHHhhcCCCeEEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIY------------------SVLAIYDCMSWIKPKVGTV  169 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~------------------aGlaIyd~L~~~~~~V~Tv  169 (240)
                      +|.++..++...|..++.++..+  -|.|-+-      ||+..                  ....++..|..++.||.+.
T Consensus        23 l~~~~~~el~~~l~~~~~d~~v~--~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaa  100 (253)
T d1uiya_          23 LSPEMALSLLQALDDLEADPGVR--AVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAA  100 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCC--EEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCce--EEEEecccccccccchhHHhhhccccCcccccchhhhhhhhhhHHhcCCCCEEEE
Confidence            78889999999988887643222  2333333      45432                  2234567788999999999


Q ss_pred             EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      +.|.|...|..|.+++|-  |++.++++|-++....+.
T Consensus       101 v~G~a~GgG~~lal~~D~--ria~~~a~~~~~e~~~g~  136 (253)
T d1uiya_         101 VNGPAVAGGAGLALACDL--VVMDEEARLGYTEVKIGF  136 (253)
T ss_dssp             ECSCEETHHHHHHHTSSE--EEEETTCEEECCHHHHTC
T ss_pred             eCeEEehhhHHHHhhhhh--hhhhhhhHHhhhhccccc
Confidence            999999999999999996  999999999988766543

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=95.82  E-value=0.025  Score=47.00  Aligned_cols=89  Identities=11%  Similarity=0.058  Sum_probs=67.2

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEE-EeC------CCccHh-----------------HHHHHHHHHhhcCCCeEE
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMY-LNC------PGGSIY-----------------SVLAIYDCMSWIKPKVGT  168 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~-INS------PGGsV~-----------------aGlaIyd~L~~~~~~V~T  168 (240)
                      .+|.++..++...+..++.++   ++.+. |.+      .|+|+.                 ....++..|..++.||.+
T Consensus        32 al~~~m~~el~~~~~~~~~d~---~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa  108 (263)
T d1wz8a1          32 AMPPALHRGLARVWRDLEAVE---GVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVA  108 (263)
T ss_dssp             CBCHHHHHHHHHHHHHHTTCT---TCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCC---CCeEEEEecccccccccchhhhhhhhcccccccccchhhhhHHHHHhhhhhcceee
Confidence            478888889999888887533   34333 333      356653                 223466778888999999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.|...|..|++++|-  |++.++++|.+.....|
T Consensus       109 ~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G  144 (263)
T d1wz8a1         109 AVEKVAVGAGLALALAADI--AVVGKGTRLLDGHLRLG  144 (263)
T ss_dssp             EECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHT
T ss_pred             ecccccccccccccccccc--ccccccccccccccccc
Confidence            9999999999999999997  99999999988665433

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=95.70  E-value=0.017  Score=48.02  Aligned_cols=90  Identities=13%  Similarity=0.017  Sum_probs=67.4

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCCC------ccHh--------------------HHHHHHHHHhhcCCCeE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCPG------GSIY--------------------SVLAIYDCMSWIKPKVG  167 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG------GsV~--------------------aGlaIyd~L~~~~~~V~  167 (240)
                      +|.++..++...|..++.++..+  .|.|.+.|      +++.                    ....+++.|..++.||.
T Consensus        27 l~~~~~~el~~~l~~~~~d~~i~--~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI  104 (269)
T d1nzya_          27 LSVKAMQEVTDALNRAEEDDSVG--AVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVL  104 (269)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCC--EEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCce--EEEEeCCcccccchhhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhcchhe
Confidence            78888899999988888643222  33334444      3321                    11246667788999999


Q ss_pred             EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362          168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS  207 (240)
Q Consensus       168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~  207 (240)
                      +.+.|.|...|..|++++|-  |++.++++|.+.....+.
T Consensus       105 aav~G~a~GgG~~lal~~D~--ria~~~a~~~~~~~~~g~  142 (269)
T d1nzya_         105 AAINGVAAGGGLGISLASDM--AICADSAKFVCAWHTIGI  142 (269)
T ss_dssp             EEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHTC
T ss_pred             hhhhhhcCCCceeeeecccH--hhhhhhhhhccccccccc
Confidence            99999999999999999996  999999999987766443

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=95.30  E-value=0.023  Score=48.45  Aligned_cols=95  Identities=16%  Similarity=0.195  Sum_probs=69.8

Q ss_pred             EccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHH
Q 026362          110 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA  179 (240)
Q Consensus       110 l~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~as  179 (240)
                      .+|.++.+.+..... ++.|-... +=+|..++|+||          |-+..|-.+++++...+.|..|++.|-+.+.|.
T Consensus        79 ~~G~~~~~~a~Kaar-fi~lc~~~-~iPlv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~  156 (264)
T d1on3a2          79 MSGCLDINASDKAAE-FVNFCDSF-NIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSY  156 (264)
T ss_dssp             GGGCBCHHHHHHHHH-HHHHHHHT-TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH
T ss_pred             cccccChHHHHHHHH-HHHHHHhc-CCceEEEeccccccccHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCccc
Confidence            367788887654443 33333323 458999999999          566789999999999999999999999999888


Q ss_pred             HHHcCCC--CCcEEeccCceEeeecCCCC
Q 026362          180 IILAGGE--KGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       180 lIl~aG~--kgkR~a~PnA~iMIHqP~~g  206 (240)
                      +.++++.  ..-+++.|+|++-+=.|.+.
T Consensus       157 ~am~g~~~~~d~~~aWP~A~~~vMg~Ega  185 (264)
T d1on3a2         157 LAMCNRDLGADAVYAWPSAEIAVMGAEGA  185 (264)
T ss_dssp             HTTTCGGGTCSEEEECTTCEEESSCHHHH
T ss_pred             cccccccCChhheeeHHhhHhhhccHHHH
Confidence            7777543  22366778888777655543

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.26  E-value=0.029  Score=47.83  Aligned_cols=93  Identities=17%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             EccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHH
Q 026362          110 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA  179 (240)
Q Consensus       110 l~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~as  179 (240)
                      .+|.++.+.+.... +++.|-... +-+|..++|+||          |-+..|-.+..++...+.|..|++.|-+.+.|.
T Consensus        82 ~~G~~~~~~~~Ka~-rfi~lc~~~-~iPlv~l~dtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~  159 (271)
T d2a7sa2          82 FAGCLDINASEKAA-RFVRTCDCF-NIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAY  159 (271)
T ss_dssp             GGGCBCHHHHHHHH-HHHHHHHHT-TCCEEEEEEECCBCCCHHHHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH
T ss_pred             cCCCcCHHHHHHHH-HHHHHHHHh-CCceEEeechhhhhhhccHHHhhHHHHHHHHHHHHHhCCCCeEEEEeCCccchhh
Confidence            35889998877644 444444333 458999999999          446788899999999999999999999999777


Q ss_pred             HHHcCCC--CCcEEeccCceEeeecCC
Q 026362          180 IILAGGE--KGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       180 lIl~aG~--kgkR~a~PnA~iMIHqP~  204 (240)
                      +.+++..  ....++.|+|++-+=.|.
T Consensus       160 ~am~~~~~~~d~~~AwP~A~igvMgpe  186 (271)
T d2a7sa2         160 CVMGSKDMGCDVNLAWPTAQIAVMGAS  186 (271)
T ss_dssp             HHTTCGGGTCSEEEECTTCEEESSCHH
T ss_pred             hhhcccccccceEEEecceeEeecCHH
Confidence            6665421  224678899888764444

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=95.19  E-value=0.029  Score=46.32  Aligned_cols=88  Identities=9%  Similarity=0.046  Sum_probs=66.1

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCCCcc-------H---------------hHHHHHHHHHhhcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCPGGS-------I---------------YSVLAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGs-------V---------------~aGlaIyd~L~~~~~~V~Tvv~  171 (240)
                      +|.++..++...|..++..+..+  .|.|.+.|+.       +               .....++..|..++.||.+.+.
T Consensus        27 l~~~~~~~l~~~l~~~~~d~~v~--~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~  104 (249)
T d1sg4a1          27 LSLEFLTELVISLEKLENDKSFR--GVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN  104 (249)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCC--EEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcc--EEEEEeccceeEecccccccccccccccccccchhhHHHHHhhhcCccccchhhc
Confidence            67788888888888887533222  3444454432       2               1233477788899999999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeeecCCC
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS  205 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~  205 (240)
                      |.|...|.-|++++|-  |++.++++|.+..|..
T Consensus       105 G~a~GgG~~lal~~D~--~ia~~~a~f~~~~pe~  136 (249)
T d1sg4a1         105 GACPAGGCLVALTCDY--RILADNPRYCIGLNET  136 (249)
T ss_dssp             EEBCHHHHHHHTTSSE--EEEECCTTCCBSCCGG
T ss_pred             cccccccccccccccc--ceeecccccccccccc
Confidence            9999999999999996  9999999998877664

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.043  Score=45.37  Aligned_cols=85  Identities=9%  Similarity=0.109  Sum_probs=64.3

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCCCc-------cHh--------------HHHHHHHHHhhcCCCeEEEEcc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCPGG-------SIY--------------SVLAIYDCMSWIKPKVGTVCFG  172 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGG-------sV~--------------aGlaIyd~L~~~~~~V~Tvv~G  172 (240)
                      +|.++...+.+.|..++. + +-...|..-+.||       |+.              ....+++.|..++.||.+.+.|
T Consensus        28 l~~~~~~~l~~al~~~~~-~-~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G  105 (261)
T d1ef8a_          28 LSKVFIDDLMQALSDLNR-P-EIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEG  105 (261)
T ss_dssp             CCHHHHHHHHHHHHHTCS-T-TCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHhC-C-CCEEEEEeccccchhhcccccccccccCCccccccccchhhhHHHHHhCchhhhhcccc
Confidence            777888888888887752 3 2223333334443       321              2457899999999999999999


Q ss_pred             eechHHHHHHcCCCCCcEEeccCceEeeec
Q 026362          173 VAASQAAIILAGGEKGMRYAMPNARIMLNQ  202 (240)
Q Consensus       173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHq  202 (240)
                      .|...|..|+++||-  |++.++++|-+-.
T Consensus       106 ~a~GgG~~lal~cD~--ria~~~a~~~~pe  133 (261)
T d1ef8a_         106 SVWGGAFEMIMSSDL--IIAASTSTFSMTP  133 (261)
T ss_dssp             EEETHHHHHHHHSSE--EEEETTCEEECCH
T ss_pred             cccchhhhhhhhhhh--hhhhHhHHHhhhh
Confidence            999999999999997  9999999887644

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.96  E-value=0.052  Score=46.33  Aligned_cols=90  Identities=12%  Similarity=0.092  Sum_probs=66.9

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHhH------------------HHHHHHHHhhcCCCeEE
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIYS------------------VLAIYDCMSWIKPKVGT  168 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~a------------------GlaIyd~L~~~~~~V~T  168 (240)
                      .+|.++...+...|..++.++..+  .|.|.+-      |+|+..                  ...++..|+.++.||.+
T Consensus        31 al~~~~~~el~~al~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  108 (310)
T d1wdka4          31 KFNRLTLNELRQAVDAIKADASVK--GVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVA  108 (310)
T ss_dssp             BCCHHHHHHHHHHHHHHHHCTTCC--EEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCCccchhhhhhhhhcccccchhhhhhhhHHHHHHHHhhcCCcccee
Confidence            377888888888888887643222  2333332      444321                  22467788889999999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.|...|.-|+++||-  |++.++++|-+.....|
T Consensus       109 av~G~a~GgG~elal~cD~--ria~~~a~f~~pe~~~G  144 (310)
T d1wdka4         109 AINGIALGGGLEMCLAADF--RVMADSAKIGLPEVKLG  144 (310)
T ss_dssp             EECSCEETHHHHHHHTSSE--EEEETTCEEECGGGGGT
T ss_pred             eccccccccccccchhhhh--hhccccceecccccccC
Confidence            9999999999999999997  99999999888665544

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.87  E-value=0.042  Score=45.39  Aligned_cols=85  Identities=11%  Similarity=0.042  Sum_probs=62.6

Q ss_pred             ccChhHHHHHHHHHHhhhccCCCCCceE-EEe------CCCccHhH--------------------------HHHHHHHH
Q 026362          113 PINSMVAQRAISQLVTLATIDEDADILM-YLN------CPGGSIYS--------------------------VLAIYDCM  159 (240)
Q Consensus       113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l-~IN------SPGGsV~a--------------------------GlaIyd~L  159 (240)
                      .+|.++..++...|..++.++   +|.+ .|-      |.|+|+..                          ...+++.|
T Consensus        28 a~~~~~~~el~~al~~~~~d~---~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  104 (266)
T d1pjha_          28 ALEGEDYIYLGELLELADRNR---DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAF  104 (266)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCT---TCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCC---CceEEEEeccccccccchhHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            377888888888888887633   3433 333      34565432                          22377788


Q ss_pred             hhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccC-ceEeeec
Q 026362          160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN-ARIMLNQ  202 (240)
Q Consensus       160 ~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~Pn-A~iMIHq  202 (240)
                      ..++.||.+.+.|.|.+.|..|++++|-  |++.+. +.|.+..
T Consensus       105 ~~~~kP~IAav~G~a~GgG~~lal~~D~--~ia~~~~~~~~~pe  146 (266)
T d1pjha_         105 IKHSKVLICCLNGPAIGLSAALVALCDI--VYSINDKVYLLYPF  146 (266)
T ss_dssp             HHCCSEEEEEECSCEEHHHHHHHHHSSE--EEESSTTCEEECCH
T ss_pred             Hhcchhhhhhhhcccccccccchhccch--hhhhhccccccccc
Confidence            8999999999999999999999999996  898764 6766533

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.69  E-value=0.092  Score=44.45  Aligned_cols=94  Identities=17%  Similarity=0.163  Sum_probs=68.5

Q ss_pred             EccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHH
Q 026362          110 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA  179 (240)
Q Consensus       110 l~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~as  179 (240)
                      .+|.|+.+.+.....-+..-+. . +=+|...+|+||          |-+.+|-.+..++...+.|..|++.|-+.+.|.
T Consensus        77 ~~G~~~~~~a~Ka~~fi~lc~~-~-~iPli~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~  154 (263)
T d1xnya2          77 FAGCLDITASEKAARFVRTCDA-F-NVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAY  154 (263)
T ss_dssp             GGGCBCHHHHHHHHHHHHHHHH-T-TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH
T ss_pred             ecCCcchhhHHHHHHHHHHHHH-h-CCceEEeecccccccchhHHHHhHHHHHHHHHHHHHccCCCeEEEEecCccccce
Confidence            3578999877655543333332 3 358999999999          445678889999999999999999999999766


Q ss_pred             HHHcCC--CCCcEEeccCceEeeecCCC
Q 026362          180 IILAGG--EKGMRYAMPNARIMLNQPQS  205 (240)
Q Consensus       180 lIl~aG--~kgkR~a~PnA~iMIHqP~~  205 (240)
                      +.+++.  .....++.|+|++-+=.|.+
T Consensus       155 ~~m~~~~~~~d~~~awP~a~~gvm~pe~  182 (263)
T d1xnya2         155 DVMGSKHLGADLNLAWPTAQIAVMGAQG  182 (263)
T ss_dssp             HHTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             eccCCcccCCcEEEEcchhhhhccCHHH
Confidence            665432  12247888999888766654

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.65  E-value=0.071  Score=44.73  Aligned_cols=101  Identities=16%  Similarity=0.188  Sum_probs=69.8

Q ss_pred             cCcE--EEEccc-----cChhHHHHHHHHHHhhhccCCCCCceEEEeCC----CccHh----------------------
Q 026362          104 RNRI--IFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYLNCP----GGSIY----------------------  150 (240)
Q Consensus       104 ~~RI--Ifl~g~-----Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP----GGsV~----------------------  150 (240)
                      ++.|  |.|+-|     +|.++..++.+.|..++.++..+-|.|.=+.+    ||..+                      
T Consensus        27 ~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~~~~~~~  106 (297)
T d1q52a_          27 DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTA  106 (297)
T ss_dssp             SSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC------------------
T ss_pred             cCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhccccccccccccc
Confidence            4566  456544     88899999999888887643333222222221    33221                      


Q ss_pred             -----------HHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccC-ceEeeecCCCC
Q 026362          151 -----------SVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN-ARIMLNQPQSG  206 (240)
Q Consensus       151 -----------aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~Pn-A~iMIHqP~~g  206 (240)
                                 ....+++.|..++.||.+.+.|.|...|..|+++||-  |++.+. ++|-+.....|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~--~ia~~~~~~f~~pe~~~G  172 (297)
T d1q52a_         107 DTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDL--TLASREYARFKQTDADVG  172 (297)
T ss_dssp             -----------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSE--EEEETTTCEEECCGGGGT
T ss_pred             chhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhc--cccccccccceeeeeccc
Confidence                       0124777888899999999999999999999999996  888875 46767665544

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.39  E-value=0.023  Score=46.47  Aligned_cols=89  Identities=17%  Similarity=0.084  Sum_probs=64.7

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCCC------ccHhH-------------HHHHHHHHhhcCCCeEEEEccee
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCPG------GSIYS-------------VLAIYDCMSWIKPKVGTVCFGVA  174 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG------GsV~a-------------GlaIyd~L~~~~~~V~Tvv~G~A  174 (240)
                      ++.++..++.+.|..++.++..+  .|.|.+-|      +|+..             ...+++.|..++.||.+.+.|.|
T Consensus        31 l~~~~~~~l~~~l~~~~~d~~v~--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a  108 (260)
T d1mj3a_          31 LCNGLIEELNQALETFEEDPAVG--AIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYA  108 (260)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCC--EEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEECSEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcc--eEEEecccccccccchhhhhhccchhhhhHHHHHHHHHHhccCCCeEEEEEcCeE
Confidence            78888889999888887643322  23334443      33321             12245677788899999999999


Q ss_pred             chHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      ...|..|.++||-  |++.++++|.+-...-|
T Consensus       109 ~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G  138 (260)
T d1mj3a_         109 LGGGCELAMMCDI--IYAGEKAQFGQPEILLG  138 (260)
T ss_dssp             ETHHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             eHHHHHHHHHCCE--EEEcCCCEEECchhccC
Confidence            9999999999996  99999999988554433

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=94.14  E-value=0.24  Score=42.54  Aligned_cols=91  Identities=11%  Similarity=0.050  Sum_probs=64.7

Q ss_pred             EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC---c-------cHhHHHHHHHHHhhcCCCeEEEEcceech
Q 026362          107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG---G-------SIYSVLAIYDCMSWIKPKVGTVCFGVAAS  176 (240)
Q Consensus       107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG---G-------sV~aGlaIyd~L~~~~~~V~Tvv~G~AaS  176 (240)
                      ....+|.|+.+.+.....-+...+. . .-+|..++|+||   |       -+..|-.+..++...+.|..|++.|-+.+
T Consensus        92 ~~~~~G~l~~~~a~K~~rfi~lc~~-~-~iPlv~l~D~pGf~~g~~~E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~G  169 (299)
T d1pixa3          92 SVGIGGKLYRQGLVKMNEFVTLCAR-D-RLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTA  169 (299)
T ss_dssp             CCEETTEECHHHHHHHHHHHHHHHH-T-TCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEET
T ss_pred             CcCCCCccCHHHHHHHHHHHHHHHH-c-CCeEEEEEeCCCcccchHHHhhhHHHHHHHHHHHHHhhcceeEEEEeccccc
Confidence            3457999999887765554443333 2 358999999999   3       45578888899999999999999999999


Q ss_pred             HHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          177 QAAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      .|.+.+++..-     .|...|++-.|.
T Consensus       170 ~a~~am~g~~~-----~~~~~~~~awP~  192 (299)
T d1pixa3         170 AAHYVLGGPQG-----NDTNAFSIGTAA  192 (299)
T ss_dssp             THHHHTTCTTC-----TTTEEEEEECTT
T ss_pred             ccccccccCcc-----CcccceecCCCc
Confidence            88776654331     234444555554

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.067  Score=44.16  Aligned_cols=88  Identities=18%  Similarity=0.168  Sum_probs=65.4

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCceEEEeCCC------ccHhH-------------------HHHHHHHHhhcCCCeEE
Q 026362          114 INSMVAQRAISQLVTLATIDEDADILMYLNCPG------GSIYS-------------------VLAIYDCMSWIKPKVGT  168 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG------GsV~a-------------------GlaIyd~L~~~~~~V~T  168 (240)
                      ++.++..++...|..++. |+.+  .|.|.+-|      +|+..                   ...++..|..++.||.+
T Consensus        27 ls~~~~~el~~al~~~~~-d~~~--~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Ia  103 (258)
T d2fw2a1          27 LNTEVIKEMVNALNSAAA-DDSK--LVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVV  103 (258)
T ss_dssp             BCHHHHHHHHHHHHHHHH-SSCS--EEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHc-CCCE--EEEEecCccccccccccchhhhcccccccchhhHHHHHHHHHHHhhhccceeeee
Confidence            677888888888887775 3332  34455444      44321                   22356678889999999


Q ss_pred             EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362          169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g  206 (240)
                      .+.|.|...|..+++++|-  |++.++++|-+....-|
T Consensus       104 av~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G  139 (258)
T d2fw2a1         104 SVNGPAIGLGASILPLCDL--VWANEKAWFQTPYTTFG  139 (258)
T ss_dssp             EECSCEETHHHHTGGGSSE--EEEETTCEEECCHHHHT
T ss_pred             ecccccccccccccccccc--cceecccceeecccccc
Confidence            9999999999999999997  99999999877554433

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=91.97  E-value=0.31  Score=39.77  Aligned_cols=82  Identities=13%  Similarity=0.035  Sum_probs=59.6

Q ss_pred             cChhHHHHHHHHHHhhhccCCCCCc-eEEEeCCC------ccH---------------hHHHHHHHHHhhcCCCeEEEEc
Q 026362          114 INSMVAQRAISQLVTLATIDEDADI-LMYLNCPG------GSI---------------YSVLAIYDCMSWIKPKVGTVCF  171 (240)
Q Consensus       114 Id~~~a~~~iaqLl~L~~~d~~~~I-~l~INSPG------GsV---------------~aGlaIyd~L~~~~~~V~Tvv~  171 (240)
                      ++.++..++...|..++.++   ++ .|.|.+.|      +++               .....++..|..++.||.+.+.
T Consensus        37 l~~~~~~el~~al~~~~~d~---~v~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~pvIa~v~  113 (249)
T d1szoa_          37 WTSTAHDELAYCFHDIACDR---ENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVN  113 (249)
T ss_dssp             ECHHHHHHHHHHHHHHHHCT---TCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CcceEeeecccccccccchhhhhhcccccchhhhhhhhhhhhhhcccCcccceeeec
Confidence            67888888888888887633   33 34445444      332               1345678889999999999999


Q ss_pred             ceechHHHHHHcCCCCCcEEeccCceEeee
Q 026362          172 GVAASQAAIILAGGEKGMRYAMPNARIMLN  201 (240)
Q Consensus       172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIH  201 (240)
                      |.|.. |..+++++|-  |++.+++.|...
T Consensus       114 g~~~G-G~~l~l~~D~--ria~~~a~f~~~  140 (249)
T d1szoa_         114 GPVTN-APEIPVMSDI--VLAAESATFQDG  140 (249)
T ss_dssp             SCBCS-STHHHHTSSE--EEEETTCEEECT
T ss_pred             ccccc-cccccccccc--ccccCCcEEEEe
Confidence            98776 5567777886  999999998743

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.16  E-value=0.46  Score=42.61  Aligned_cols=105  Identities=17%  Similarity=0.084  Sum_probs=73.8

Q ss_pred             hhhccCcEE-EEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEE
Q 026362          100 SVLFRNRII-FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGT  168 (240)
Q Consensus       100 ~~L~~~RII-fl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~T  168 (240)
                      +.--+++++ -.+|.+.++.+......+..+... ..-||.++.|.||          |-+..|-.|.+.+..++.|+.+
T Consensus        95 ~~~s~~~~~~~~Ggv~~p~sA~K~A~~i~d~cd~-~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~iv~A~~~~~vP~i~  173 (404)
T d1uyra2          95 NPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNG-EQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIII  173 (404)
T ss_dssp             CSSCCCEEEEECTTCBCHHHHHHHHHHHHHHHTT-SCCCEEECCCCCCBCC------CTHHHHHHHHHHHHHTCCSCEEE
T ss_pred             cccchhhhhhccCCccCchHHHHHHHHHHHhhhc-cccceEEeecCCcccCcHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            333344544 578899999887777666555432 2458999999999          4566899999999999999999


Q ss_pred             EEc--ceechHHHHHHcCCCCCc----EEeccCceEeeecCCCC
Q 026362          169 VCF--GVAASQAAIILAGGEKGM----RYAMPNARIMLNQPQSG  206 (240)
Q Consensus       169 vv~--G~AaS~aslIl~aG~kgk----R~a~PnA~iMIHqP~~g  206 (240)
                      ++.  |.+.. |+++.+++....    .|+-|+|++-+=.|.+.
T Consensus       174 vI~~~g~~~G-Ga~vv~~~~~~~~~~~~yAwP~a~~gVm~pEGa  216 (404)
T d1uyra2         174 YIPPTGELRG-GSWVVVDPTINADQMEMYADVNARAGVLEPQGM  216 (404)
T ss_dssp             EECTTCEEEH-HHHHTTCGGGGTTTEEEEEETTCEEESSCHHHH
T ss_pred             EEeCCcccch-hhhhcccCccCCccceEEECCccccccCChhhh
Confidence            995  44444 566655543211    36678888887777654

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=85.86  E-value=0.98  Score=38.20  Aligned_cols=90  Identities=11%  Similarity=0.066  Sum_probs=61.1

Q ss_pred             ccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHH-----------HHHHHH--HhhcCCCeEEEEcceechH
Q 026362          111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV-----------LAIYDC--MSWIKPKVGTVCFGVAASQ  177 (240)
Q Consensus       111 ~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aG-----------laIyd~--L~~~~~~V~Tvv~G~AaS~  177 (240)
                      +|-+++..+..+..- ..+..+. .-|+..+++|||+.+..+           ..+++.  |.....|+.+++.|-|.+.
T Consensus       117 gGs~~~~~~~K~~r~-~~lA~~~-~lP~I~l~ds~Ga~~~~~~e~~~~~~~~g~~~~~~a~ls~~~VP~Isvv~G~~~gG  194 (287)
T d1pixa2         117 AGAWVPGQAECLLRA-SDTAKTL-HVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAG  194 (287)
T ss_dssp             TTEECTTHHHHHHHH-HHHHHHH-TCCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETH
T ss_pred             cccchhhHHHHHHHH-HHhhhhc-CCCEEEEecCCcccCCcchhhccchhhHHHHHHHHHHHhhcCCCeEEEecCCcccc
Confidence            466777776665553 3344333 357888899999876432           234443  3445679999999999999


Q ss_pred             HHHHHcCCCCCcEEeccCceEeeecCC
Q 026362          178 AAIILAGGEKGMRYAMPNARIMLNQPQ  204 (240)
Q Consensus       178 aslIl~aG~kgkR~a~PnA~iMIHqP~  204 (240)
                      |++..++++.  .++.+++++.+--|.
T Consensus       195 gAy~~~~~~~--i~~~~~a~i~~~Gp~  219 (287)
T d1pixa2         195 GGYHSISPTV--IIAHEKANMAVGGAG  219 (287)
T ss_dssp             HHHHHHSSSE--EEEETTCEEESCCCT
T ss_pred             ceecccccee--EEecCCeEEEEECHH
Confidence            9988776663  444578988886665