Citrus Sinensis ID: 026387

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MFHAPALRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
cccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccccccc
ccccccHHHHHccccccEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccEccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccEccccccccHHHHHHHHHHHHHHHHHHHHEEEEEEEccHHHHcccccccHEEccccccc
mfhapalrswisssrspiimaskskthrlhqlsGTALqsiakrprtittesYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVQEYVEAATFCKFCRTGTLLDLeelnagllplsdpaieplqiNVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVplmdnnsdmkTKMDTMLQSVLKIENACLSVHvrgseytllgssdpsflmgvpdmqs
mfhapalrswisssrspIIMASkskthrlhqlsgtalqsiakrprtittesyMKDAFANYAGYLNELNEKRErvvkssrditinskkvIFQVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEytllgssdpsflmgvpdmqs
MFHAPALrswisssrspiiMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVQEYVEAATFCKFCRTGTlldleelnagllplSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
*********************************************TITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNS**KTKMDTMLQSVLKIENACLSVHVRGSEYTLL****************
*******************************************************AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPS***G******
MFHAPALRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
**************************************************SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMGVP****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFHAPALRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query239 2.2.26 [Sep-21-2011]
Q4R599290 Translin-associated prote N/A no 0.665 0.548 0.303 6e-20
Q9JHB5290 Translin-associated prote yes no 0.665 0.548 0.303 6e-20
Q5RC21290 Translin-associated prote yes no 0.665 0.548 0.299 2e-19
Q99598290 Translin-associated prote yes no 0.665 0.548 0.299 2e-19
Q9QZE7290 Translin-associated prote yes no 0.665 0.548 0.299 4e-19
O74955231 Translin-associated prote yes no 0.673 0.696 0.248 4e-11
>sp|Q4R599|TSNAX_MACFA Translin-associated protein X OS=Macaca fascicularis GN=TSNAX PE=2 SV=1 Back     alignment and function desciption
 Score = 97.8 bits (242), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 75/234 (32%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIF------------------------- 90
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF                         
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97

Query: 91  -----QV--------------------QEYVEAATFCKFCRTGTLLDLEELNAGLL---- 121
                QV                    QEYVEA +F  F +T +L+ ++E+N  L+    
Sbjct: 98  RQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTD 157

Query: 122 --------PLSDPAIEP-----LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKI 168
                   P SD   E      L++   DYLLG+ADLTGELMR+ I  + +G+++   ++
Sbjct: 158 DNGKENKTPSSDTQDEQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEV 217

Query: 169 CRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 219
            +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 218 SQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266
Possible role in spermatogenesis.
Macaca fascicularis (taxid: 9541)
>sp|Q9JHB5|TSNAX_RAT Translin-associated protein X OS=Rattus norvegicus GN=Tsnax PE=1 SV=1 Back     alignment and function description
>sp|Q5RC21|TSNAX_PONAB Translin-associated protein X OS=Pongo abelii GN=TSNAX PE=2 SV=1 Back     alignment and function description
>sp|Q99598|TSNAX_HUMAN Translin-associated protein X OS=Homo sapiens GN=TSNAX PE=1 SV=1 Back     alignment and function description
>sp|Q9QZE7|TSNAX_MOUSE Translin-associated protein X OS=Mus musculus GN=Tsnax PE=1 SV=1 Back     alignment and function description
>sp|O74955|TSNAX_SCHPO Translin-associated protein X homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC736.09c PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
359386148270 translin-associated factor X [Citrus sin 0.920 0.814 0.803 1e-117
449452825284 PREDICTED: translin-associated protein X 0.920 0.774 0.628 5e-87
359473638274 PREDICTED: translin-associated protein X 0.895 0.781 0.643 8e-85
297738200270 unnamed protein product [Vitis vinifera] 0.895 0.792 0.624 1e-83
225424991282 PREDICTED: translin-associated protein X 0.895 0.758 0.624 1e-83
357516891315 Translin-associated protein X [Medicago 0.966 0.733 0.550 2e-82
224108631307 predicted protein [Populus trichocarpa] 0.916 0.713 0.586 4e-82
363807852281 uncharacterized protein LOC100776523 [Gl 0.928 0.790 0.564 5e-79
388498206293 unknown [Lotus japonicus] 0.974 0.795 0.569 3e-77
297818030287 translin family protein [Arabidopsis lyr 0.903 0.752 0.559 8e-77
>gi|359386148|gb|AEV43363.1| translin-associated factor X [Citrus sinensis] Back     alignment and taxonomy information
 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/270 (80%), Positives = 219/270 (81%), Gaps = 50/270 (18%)

Query: 20  MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSR 79
           MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVK+SR
Sbjct: 1   MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKASR 60

Query: 80  DITINSKKVIFQV----------------------------------------------- 92
           DITINSKKVIFQV                                               
Sbjct: 61  DITINSKKVIFQVHRISRDNKEEVLKKAEADLVAVKDQYISRLVKELQGTDFWKLRRAYS 120

Query: 93  ---QEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGEL 149
              QEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINV DYLLGLADLTGEL
Sbjct: 121 PGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVLDYLLGLADLTGEL 180

Query: 150 MRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENA 209
           MRLAIGRISDGEL+FAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENA
Sbjct: 181 MRLAIGRISDGELDFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENA 240

Query: 210 CLSVHVRGSEYTLLGSSDPSFLMGVPDMQS 239
           CLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
Sbjct: 241 CLSVHVRGSEYTLLGSSDPSFLMGVPDMQS 270

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449452825|ref|XP_004144159.1| PREDICTED: translin-associated protein X-like [Cucumis sativus] gi|449523668|ref|XP_004168845.1| PREDICTED: translin-associated protein X-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359473638|ref|XP_003631337.1| PREDICTED: translin-associated protein X-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738200|emb|CBI27401.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424991|ref|XP_002266684.1| PREDICTED: translin-associated protein X-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357516891|ref|XP_003628734.1| Translin-associated protein X [Medicago truncatula] gi|355522756|gb|AET03210.1| Translin-associated protein X [Medicago truncatula] Back     alignment and taxonomy information
>gi|224108631|ref|XP_002314915.1| predicted protein [Populus trichocarpa] gi|222863955|gb|EEF01086.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807852|ref|NP_001242186.1| uncharacterized protein LOC100776523 [Glycine max] gi|255644471|gb|ACU22739.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388498206|gb|AFK37169.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|297818030|ref|XP_002876898.1| translin family protein [Arabidopsis lyrata subsp. lyrata] gi|297322736|gb|EFH53157.1| translin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
TAIR|locus:2044264287 AT2G03780 "AT2G03780" [Arabido 0.615 0.512 0.644 3.3e-69
DICTYBASE|DDB_G0284837284 tsnax "translin-associated pro 0.523 0.440 0.323 8.1e-23
UNIPROTKB|E1BQ94260 LOC100859597 "Uncharacterized 0.364 0.334 0.415 6e-22
UNIPROTKB|G3MY03290 TSNAX "Uncharacterized protein 0.364 0.3 0.393 4.1e-20
UNIPROTKB|J9P139290 TSNAX "Uncharacterized protein 0.364 0.3 0.393 4.1e-20
UNIPROTKB|Q99598290 TSNAX "Translin-associated pro 0.364 0.3 0.382 5.3e-20
RGD|621574290 Tsnax "translin-associated fac 0.364 0.3 0.393 8.6e-20
UNIPROTKB|F1RGU1290 TSNAX "Uncharacterized protein 0.364 0.3 0.382 8.9e-20
MGI|MGI:1855672290 Tsnax "translin-associated fac 0.364 0.3 0.382 1.1e-19
ZFIN|ZDB-GENE-050913-80281 tsnax "translin-associated fac 0.527 0.448 0.321 1e-18
TAIR|locus:2044264 AT2G03780 "AT2G03780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 483 (175.1 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
 Identities = 96/149 (64%), Positives = 117/149 (78%)

Query:    92 VQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMR 151
             VQEYVEAATF KFC +GT              SDP++EPLQIN+ DY+LGLADLTGELMR
Sbjct:   139 VQEYVEAATFYKFCLSGTLCTLDEINTTLVPLSDPSLEPLQINILDYILGLADLTGELMR 198

Query:   152 LAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACL 211
             +AIGRISDGE+EFA++IC+F R I+REL LVVP MD++ DMK+KM+ MLQSV+KIENAC 
Sbjct:   199 MAIGRISDGEIEFAQRICQFVRQIHRELMLVVPKMDDSYDMKSKMEVMLQSVIKIENACF 258

Query:   212 SVHVRGSEYT-LLGSSDP-SFLMGVPDMQ 238
             SVHVRG EY  LLG + P S+L+G  D++
Sbjct:   259 SVHVRGLEYIPLLGDNAPTSYLLGAADVE 287
GO:0003677 "DNA binding" evidence=ISS
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0043565 "sequence-specific DNA binding" evidence=IEA
DICTYBASE|DDB_G0284837 tsnax "translin-associated protein X" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQ94 LOC100859597 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G3MY03 TSNAX "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P139 TSNAX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q99598 TSNAX "Translin-associated protein X" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|621574 Tsnax "translin-associated factor X" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RGU1 TSNAX "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1855672 Tsnax "translin-associated factor X" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050913-80 tsnax "translin-associated factor X" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
pfam01997187 pfam01997, Translin, Translin family 2e-45
COG2178204 COG2178, COG2178, Predicted RNA-binding protein of 2e-15
PRK14562204 PRK14562, PRK14562, haloacid dehalogenase superfam 5e-12
>gnl|CDD|202084 pfam01997, Translin, Translin family Back     alignment and domain information 
 Score =  149 bits (379), Expect = 2e-45
 Identities = 61/193 (31%), Positives = 83/193 (43%), Gaps = 48/193 (24%)

Query: 68  NEKRERVVKSSRDITINSKKVIFQV----------------------------------- 92
           ++ RE ++K SRDIT  SKK IF +                                   
Sbjct: 1   HDAREELIKISRDITRLSKKAIFALHRGDAEEAEELLKEAKELLAKLKELLKGHPYYRYS 60

Query: 93  -------QEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADL 145
                  QEYVEA TF  +  TGTL  LEEL   L    +       +   DYLLGL DL
Sbjct: 61  GAWSNALQEYVEALTFYHYLETGTLPSLEELGEILGVPVNDGF---HVTPEDYLLGLFDL 117

Query: 146 TGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLK 205
           TGELMR A+  ++ G+ E   +I  F  D+Y    L+      N  ++ K+D +  S+ K
Sbjct: 118 TGELMRYALNSVTLGDYERPLEILEFMEDLYAGFRLLNLK---NDGLRKKLDVLRYSLEK 174

Query: 206 IENACLSVHVRGS 218
           +E     + VRG 
Sbjct: 175 VEEVVYDLSVRGL 187

Members of this family include Translin that interacts with DNA and forms a ring around the DNA. This family also includes human translin-associated protein X, which was found to interact with translin with yeast two-hybrid screen. Length = 187
>gnl|CDD|225089 COG2178, COG2178, Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|184746 PRK14562, PRK14562, haloacid dehalogenase superfamily protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 239
KOG3066271 consensus Translin-associated protein X [General f 100.0
PF01997200 Translin: Translin family; InterPro: IPR002848 Tra 100.0
PRK14562204 haloacid dehalogenase superfamily protein; Provisi 100.0
KOG3067226 consensus Translin family protein [General functio 100.0
COG2178204 Predicted RNA-binding protein of the translin fami 100.0
>KOG3066 consensus Translin-associated protein X [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-51  Score=357.09  Aligned_cols=196  Identities=42%  Similarity=0.605  Sum_probs=180.4

Q ss_pred             ccCCCccCCcchHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q 026387           41 AKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV----------------------------   92 (239)
Q Consensus        41 ~~~~~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~L----------------------------   92 (239)
                      |+..+||++.+++.+.|.+|+++|++.||+||||+|+|||||.+||++||+|                            
T Consensus        23 pqkartmsteSsm~~aF~sf~~~L~~~~dKrEriVklSRdITi~SKr~IFllHr~ss~~~~e~~l~~~~~~le~vr~k~f  102 (271)
T KOG3066|consen   23 PQKARTMSTESSMEEAFLSFKNFLQEDQDKRERIVKLSRDITIQSKRMIFLLHRTSSSGFPEPKLFDRTSILEKVRHKEF  102 (271)
T ss_pred             cccccccCccchHHHHHHHHHHHHHHhHHHHHHHHhhhhhheeccceeeeeeeecccCCCcchhhhhhhhHHHHHHHHHH
Confidence            3456899999999999999999999999999999999999999999999998                            


Q ss_pred             -----------------------HHHHHHHHHHHHhhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHHHHHHhHHHH
Q 026387           93 -----------------------QEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGEL  149 (239)
Q Consensus        93 -----------------------QEyvEA~sf~~yL~~g~Llt~eev~~~l~~l~~~~~~~~~V~~~DYLlGL~DLtGEL  149 (239)
                                             ||||||++|++||.+|+|.+.+||+..+.++..+  .++.|++-||++|+|||||||
T Consensus       103 ~~l~~EL~G~d~~kf~rA~t~GlQEYVEAvtF~~f~lsgtLc~~dein~~lvpl~~~--~rl~in~iDYvLGvaDlTGEl  180 (271)
T KOG3066|consen  103 ESLKRELAGLDADKFSRACTHGLQEYVEAVTFKFFLLSGTLCQTDEINSCLVPLDSS--FRLSINFIDYVLGVADLTGEL  180 (271)
T ss_pred             HHHHHHhcCCcHHHHHHhhcccHHHHHHHHHHHHHHHhccccchhhhhheecccCCc--cceeeeHHHHHHHHhhhHHHH
Confidence                                   9999999999999999999999999887766554  568999999999999999999


Q ss_pred             HHHHhhhhcCCchHhHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhheeeEeccccc-CCCCCCc
Q 026387          150 MRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYT-LLGSSDP  228 (239)
Q Consensus       150 mR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Y~l~vRg~e~~-~~~~~~~  228 (239)
                      ||+||+++.+|+++.+.++++|+|.||.++..+.+......++.+|+.+|+||+-|||++||.++|||+|++ ..++++|
T Consensus       181 MRm~I~~~s~g~I~~~~~~~qFlRq~h~~~s~i~~~~~~~ye~~~Kl~vm~qSi~KvEnaCys~~vRg~e~~~l~l~~~~  260 (271)
T KOG3066|consen  181 MRMLITNGSKGSIQQLTQQVQFLRQLHKNCSEIEHLPSKKYELQQKLSVMEQSISKVENACYSKIVRGAEKRYLNLEVDT  260 (271)
T ss_pred             HHHHHhcCcCcchhhHHHHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHHHHhHHHHHHhcccccccccccccc
Confidence            999999999999999999999999999999998765533679999999999999999999999999999999 4458888


Q ss_pred             -ccccCCCCCC
Q 026387          229 -SFLMGVPDMQ  238 (239)
Q Consensus       229 -~~~~~~~~~~  238 (239)
                       ..+.++.|++
T Consensus       261 ~~~~~e~~d~e  271 (271)
T KOG3066|consen  261 ATPPEEKRDRE  271 (271)
T ss_pred             cCCchhhhhcC
Confidence             7777777654

>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments Back     alignment and domain information
>PRK14562 haloacid dehalogenase superfamily protein; Provisional Back     alignment and domain information
>KOG3067 consensus Translin family protein [General function prediction only] Back     alignment and domain information
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
3pja_J290 Crystal Structure Of Human C3po Complex Length = 29 9e-16
3axj_B298 High Resolution Crystal Structure Of C3po Length = 4e-08
3riu_C269 Crystal Structure Of Drosophila Hexameric C3po Form 5e-08
3axj_A249 High Resolution Crystal Structure Of C3po Length = 6e-05
2qrx_A235 Crystal Structure Of Drosophila Melanogaster Transl 8e-05
2qva_A247 Crystal Structure Of Drosophila Melanogaster Transl 8e-05
3riu_A218 Crystal Structure Of Drosophila Hexameric C3po Form 9e-05
4dg7_A255 Low Resolution Structure Of Drosophila Translin Len 1e-04
>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex Length = 290 Back     alignment and structure 
Iteration: 1

 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 75/234 (32%)
Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIF------------------------- 90
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF                         
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97
Query: 91  -------------------------QVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXSD 125
                                     +QEYVEA +F  F +T +              ++
Sbjct: 98  RQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTE 157
Query: 126 --------PAIEP---------LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKI 168
                   P+ +          L++   DYLLG+ADLTGELMR+ I  + +G+++   ++
Sbjct: 158 DNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEV 217
Query: 169 CRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 219
            +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 218 SQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266
>pdb|3AXJ|B Chain B, High Resolution Crystal Structure Of C3po Length = 298 Back     alignment and structure
>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By Truncated Translin And Trax Length = 269 Back     alignment and structure
>pdb|3AXJ|A Chain A, High Resolution Crystal Structure Of C3po Length = 249 Back     alignment and structure
>pdb|2QRX|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin Protein Length = 235 Back     alignment and structure
>pdb|2QVA|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin Protein Length = 247 Back     alignment and structure
>pdb|3RIU|A Chain A, Crystal Structure Of Drosophila Hexameric C3po Formed By Truncated Translin And Trax Length = 218 Back     alignment and structure
>pdb|4DG7|A Chain A, Low Resolution Structure Of Drosophila Translin Length = 255 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
3qb5_K290 Translin-associated protein X; alpha helical bundl 2e-43
3axj_A249 GM27569P, translin; translin/TRAX heterodimer, pas 2e-39
1j1j_A240 Translin; testis/brain RNA binding protein, ssDNA 8e-39
3axj_B298 TRAX, translin associated factor X, isoform B; tra 3e-38
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J Length = 290 Back     alignment and structure
 Score =  147 bits (372), Expect = 2e-43
 Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 69/256 (26%)

Query: 41  AKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV-------- 92
            +  + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +        
Sbjct: 23  RREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPD 82

Query: 93  ------------------------------------------QEYVEAATFCKFCRTGTL 110
                                                     QEYVEA +F  F +T +L
Sbjct: 83  MEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSL 142

Query: 111 LDLEELNAGLL------------PLSDPAIEP-----LQINVFDYLLGLADLTGELMRLA 153
           + ++E+N  L+            P SD   +      L++   DYLLG+ADLTGELMR+ 
Sbjct: 143 ISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMC 202

Query: 154 IGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSV 213
           I  + +G+++   ++ +F R +Y   + +        ++  K+ T+ QS+ K+ENAC ++
Sbjct: 203 INSVGNGDIDTPFEVSQFLRQVYDGFSFIGNT--GPYEVSKKLYTLKQSLAKVENACYAL 260

Query: 214 HVRGSEYTLLGSSDPS 229
            VRGSE      +D  
Sbjct: 261 KVRGSEIPKHMLADVF 276
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A Length = 249 Back     alignment and structure
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A Length = 240 Back     alignment and structure
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C Length = 298 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
3qb5_K290 Translin-associated protein X; alpha helical bundl 100.0
3axj_B298 TRAX, translin associated factor X, isoform B; tra 100.0
3axj_A249 GM27569P, translin; translin/TRAX heterodimer, pas 100.0
1j1j_A240 Translin; testis/brain RNA binding protein, ssDNA 100.0
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J Back     alignment and structure
Probab=100.00  E-value=1.9e-57  Score=412.55  Aligned_cols=189  Identities=35%  Similarity=0.595  Sum_probs=160.4

Q ss_pred             cccccccCC-CccCCcchHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Q 026387           36 ALQSIAKRP-RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV----------------------   92 (239)
Q Consensus        36 ~~~~~~~~~-~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~L----------------------   92 (239)
                      |+++++++. ..+++++++.++|++|+++||++||+||||+|+|||||++||++||+|                      
T Consensus        17 ~~~~~~~~~~~~~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~   96 (290)
T 3qb5_K           17 NFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDG   96 (290)
T ss_dssp             --------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             CCccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            466665544 668889999999999999999999999999999999999999999998                      


Q ss_pred             ----------------------------HHHHHHHHHHHHhhcCCCCCHHHHhhccCCCCCCCCC---------------
Q 026387           93 ----------------------------QEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIE---------------  129 (239)
Q Consensus        93 ----------------------------QEyvEA~sf~~yL~~g~Llt~eev~~~l~~l~~~~~~---------------  129 (239)
                                                  ||||||++|++||++|+|+|++|+++.|.....++..               
T Consensus        97 i~~~~~~La~~l~~~~~yry~~~~s~~lQEyVEA~sf~~yL~~~~Lit~eev~~~L~~~~~~~~~~~~~~~~~~~~~~~~  176 (290)
T 3qb5_K           97 VRQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFG  176 (290)
T ss_dssp             HHHHHHHHHHHHSSSCSTTTGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHTTEECC--------------------
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhcccccccccccccccccccccccc
Confidence                                        9999999999999999999999998876433222211               


Q ss_pred             --CcccChhhHHHHHHHhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHHhhhhcCCCCCCC-cchhhHHHHHHHHHHH
Q 026387          130 --PLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNS-DMKTKMDTMLQSVLKI  206 (239)
Q Consensus       130 --~~~V~~~DYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~-~LRkK~D~lk~slkKv  206 (239)
                        .|+|+++|||+||+||||||||||||+|+.||++.|++||+||++||++|.+|  +++ |+ +||||+|+|||||+||
T Consensus       177 ~~~~~V~~eDYLlGL~DLtGELmR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L--~~~-~~~~LrKK~d~lk~svkKv  253 (290)
T 3qb5_K          177 TWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFI--GNT-GPYEVSKKLYTLKQSLAKV  253 (290)
T ss_dssp             CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH--GGG-SCHHHHHHHHHHHHHHHHH
T ss_pred             cceecCCHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc--CCC-CChhhhHHHHHHHHHHHHH
Confidence              39999999999999999999999999999999999999999999999999999  666 55 9999999999999999


Q ss_pred             HhhhheeeEecccccCCCCCC
Q 026387          207 ENACLSVHVRGSEYTLLGSSD  227 (239)
Q Consensus       207 E~v~Y~l~vRg~e~~~~~~~~  227 (239)
                      |++||+|+|||+|+|.++..|
T Consensus       254 E~v~Ydl~vRg~e~pk~~~~d  274 (290)
T 3qb5_K          254 ENACYALKVRGSEIPKHMLAD  274 (290)
T ss_dssp             HHHHHHHHHHTTCCCCCCC--
T ss_pred             HHHhhheeeecCCCCcccchh
Confidence            999999999999999766443
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C Back     alignment and structure
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A Back     alignment and structure
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 239
d1j1ja_217 a.118.16.1 (A:) Translin {Human (Homo sapiens) [Ta 2e-38
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]} Length = 217 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 2e-38
 Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 57/218 (26%)

Query: 53  MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVQ------------------- 93
           + + F    G+L    + RE + K  + +   +++++  +Q                   
Sbjct: 3   VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAR 62

Query: 94  ----------------------------------EYVEAATFCKFCRTGTLLDLEELNAG 119
                                               V  A F  +  T TL+  E +   
Sbjct: 63  EHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEI 122

Query: 120 LLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYREL 179
           L    D   +   ++V DYL G+  L  EL RL++  ++ G+      I  F  ++    
Sbjct: 123 LGIEPDRE-KGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSGF 181

Query: 180 TLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 217
            L+      N  ++ + D +   V K+E     + +RG
Sbjct: 182 RLLNL---KNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 216

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
d1j1ja_217 Translin {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-53  Score=368.67  Aligned_cols=164  Identities=22%  Similarity=0.383  Sum_probs=155.8

Q ss_pred             chHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q 026387           51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV--------------------------------------   92 (239)
Q Consensus        51 ~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~L--------------------------------------   92 (239)
                      |++.++|++|+++||++||+||+|+|+|||||+.||++||+|                                      
T Consensus         1 m~~~~~F~~~~~~Ld~~~d~RE~lik~sRdI~~~sk~~I~~Lhr~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~l~~~~~   80 (217)
T d1j1ja_           1 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKFP   80 (217)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            578899999999999999999999999999999999999998                                      


Q ss_pred             ---------------HHHHHHHHHHHHhhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHHHHHHhHHHHHHHHhhhh
Q 026387           93 ---------------QEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRI  157 (239)
Q Consensus        93 ---------------QEyvEA~sf~~yL~~g~Llt~eev~~~l~~l~~~~~~~~~V~~~DYLlGL~DLtGELmR~ain~v  157 (239)
                                     ||||||++|++|+++|+|+|++++++.+ +++.+....|+|+++|||+||+||||||||+|+|++
T Consensus        81 ~~~~y~y~~~~~~~lQE~vEA~~f~~~l~~~~l~s~eev~~~l-~~~~~~~~~~~v~~~dYL~Gl~DltGEL~R~ain~v  159 (217)
T d1j1ja_          81 AEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEIL-GIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSV  159 (217)
T ss_dssp             GGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH-TCCCSSSSSSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHhHhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHh-CCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           9999999999999999999999998765 455556678999999999999999999999999999


Q ss_pred             cCCchHhHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhheeeEecc
Q 026387          158 SDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGS  218 (239)
Q Consensus       158 ~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Y~l~vRg~  218 (239)
                      +.||++.|.++++||++||++|..|  +++ |++||||+|++||+|+|||++|||++|||+
T Consensus       160 ~~gd~~~~~~i~~f~~~l~~~f~~l--~~~-~~~LrkK~d~~k~sl~KvE~~~Ydl~vRGl  217 (217)
T d1j1ja_         160 TAGDYSRPLHISTFINELDSGFRLL--NLK-NDSLRKRYDGLKYDVKKVEEVVYDLSIRGF  217 (217)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHTTC--CCC-CHHHHHHHTTHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHhh--cCC-ChhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999  665 899999999999999999999999999995