Citrus Sinensis ID: 026399

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MSSQIVRSASRAATARSLLSASKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN
ccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHcccccccHHHHHHHHcccEEEEEEEcccHHHHHHHHHccccccccccccccccccccccccEEEccccHHHHHHHHHccccccccccccccccccEEccc
cccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHccHHccccccEEEEEEcHHHHHcccHHHHHHHHHHHccEEEEEccEcccHHHHHHHcHHHcccccHHHHHHHHccccEEEEEEEcccHHHHHHHHHccccHHHcccccHHHHHcccHHHccEEEcccHHHHHHHHHHHccHHHccccccccHHHHcccc
MSSQIVRSASRAATARSLLSAsknsrfysegrAVSAAAAVTFsgklpylvssfgragsstasrswlsgaiaipaaaYTLQEQEVHAAEMERTFIaikpdgvqrGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYhdlkerpffnglceflssgpviaMVWEGegvitygrkligatdpqksepgtirgdLAVVVGrniihgsdgpetaKDEIklwfkpedlvnytsNAEKWVYESN
mssqivrsasraatarsllsasknsrfysEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFiaikpdgvqrGLISEIISrferkgfklVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIgatdpqksepgtiRGDLAVVVGRNiihgsdgpetakdeiklwfkpedlvnytsnaekwvyesn
MSSQIVrsasraatarsllsasKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN
********************************AVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGAT********TIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY***
**********************************************PY**************RSWLSGAIAIPAAA***********EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES*
****************SLLSASKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFG*********SWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN
*************************R*******VSAAA********PY*********SSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE*N
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSQIVRSASRAATARSLLSASKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query239 2.2.26 [Sep-21-2011]
Q8LAH8237 Nucleoside diphosphate ki yes no 0.991 1.0 0.790 1e-110
O49203238 Nucleoside diphosphate ki no no 0.991 0.995 0.795 1e-106
Q8RXA8235 Nucleoside diphosphate ki N/A no 0.974 0.991 0.788 1e-105
P81766153 Nucleoside diphosphate ki N/A no 0.640 1.0 0.836 2e-73
A2CDK0152 Nucleoside diphosphate ki yes no 0.627 0.986 0.653 4e-55
Q7V425152 Nucleoside diphosphate ki yes no 0.627 0.986 0.66 7e-55
Q7VEG3151 Nucleoside diphosphate ki yes no 0.623 0.986 0.657 8e-55
Q0I6J3152 Nucleoside diphosphate ki yes no 0.619 0.973 0.648 9e-55
A2BNH4152 Nucleoside diphosphate ki yes no 0.623 0.980 0.664 4e-54
Q46I11151 Nucleoside diphosphate ki yes no 0.623 0.986 0.657 4e-54
>sp|Q8LAH8|NDK4_ARATH Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2 Back     alignment and function desciption
 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/239 (79%), Positives = 214/239 (89%), Gaps = 2/239 (0%)

Query: 1   MSSQIVRSASRAATARSLLSASKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSST 60
           MSSQI RSASRAA  RSLLS++KN+RF+SEGRA+ AA+ V  +GK+P   S+FG++GS  
Sbjct: 1   MSSQICRSASRAA--RSLLSSAKNARFFSEGRAIGAASVVHATGKVPQYASNFGKSGSGF 58

Query: 61  ASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKL 120
            S SW++G +A+PAAA+ LQ+QE  AAEMERTFIAIKPDGVQRGLISEII+RFERKG+KL
Sbjct: 59  VSNSWITGLLALPAAAFMLQDQEALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKL 118

Query: 121 VAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATD 180
           V IK++VPSK FAQKHYHDLKERPFFNGLC FLSSGPV+AMVWEGEGVI YGRKLIGATD
Sbjct: 119 VGIKVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATD 178

Query: 181 PQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN 239
           PQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEI LWFKPE+LV+YTSNAEKW+Y  N
Sbjct: 179 PQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWIYGQN 237
Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Shows the highest specificity towards GDP.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 6
>sp|O49203|NDK3_ARATH Nucleoside diphosphate kinase III, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDPK3 PE=1 SV=1 Back     alignment and function description
>sp|Q8RXA8|NDK4_SPIOL Nucleoside diphosphate kinase 4, chloroplastic OS=Spinacia oleracea GN=NDK4 PE=1 SV=1 Back     alignment and function description
>sp|P81766|NDK3_SPIOL Nucleoside diphosphate kinase 3 OS=Spinacia oleracea PE=1 SV=1 Back     alignment and function description
>sp|A2CDK0|NDK_PROM3 Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1 Back     alignment and function description
>sp|Q7V425|NDK_PROMM Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1 Back     alignment and function description
>sp|Q7VEG3|NDK_PROMA Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=ndk PE=3 SV=2 Back     alignment and function description
>sp|Q0I6J3|NDK_SYNS3 Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311) GN=ndk PE=3 SV=1 Back     alignment and function description
>sp|A2BNH4|NDK_PROMS Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain AS9601) GN=ndk PE=3 SV=1 Back     alignment and function description
>sp|Q46I11|NDK_PROMT Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
255537805236 nucleoside diphosphate kinase, putative 0.983 0.995 0.829 1e-110
18416233237 nucleoside diphosphate kinase IV [Arabid 0.991 1.0 0.790 1e-108
21593387237 nucleoside diphosphate kinase 3 (ndpk3) 0.991 1.0 0.786 1e-107
224058260237 predicted protein [Populus trichocarpa] 0.987 0.995 0.820 1e-107
147864944235 hypothetical protein VITISV_041718 [Viti 0.983 1.0 0.824 1e-107
334186865 467 Pleckstrin homology (PH) domain-containi 0.966 0.494 0.789 1e-105
224072202236 predicted protein [Populus trichocarpa] 0.987 1.0 0.811 1e-105
19744167235 NDPK III [Brassica rapa] 0.983 1.0 0.803 1e-105
15237018238 nucleoside diphosphate kinase III [Arabi 0.991 0.995 0.795 1e-104
294862567238 nucleoside diphosphate kinase 1 [Solanum 0.987 0.991 0.792 1e-104
>gi|255537805|ref|XP_002509969.1| nucleoside diphosphate kinase, putative [Ricinus communis] gi|223549868|gb|EEF51356.1| nucleoside diphosphate kinase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/240 (82%), Positives = 215/240 (89%), Gaps = 5/240 (2%)

Query: 1   MSSQIVRSASRAATARSLLSASKNSR-FYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSS 59
           MSSQI+RSASRAA  RSLLSASK S  FYSEGRAV  AAAV+ SGK  +L S+F + GSS
Sbjct: 1   MSSQIIRSASRAA--RSLLSASKTSSCFYSEGRAV--AAAVSLSGKASFLASAFRKTGSS 56

Query: 60  TASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFK 119
           T S  W+SGA+AIPAA Y LQEQE HAAEMERTFIAIKPDGVQRGLI+EI++RFERKGFK
Sbjct: 57  TVSAQWISGALAIPAAVYMLQEQEAHAAEMERTFIAIKPDGVQRGLIAEIVARFERKGFK 116

Query: 120 LVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGAT 179
           LV IK+VVPSKEFAQKHYHDLKERPFF+GLC+FLSSGPVIAMVWEGEGVI YGRKLIGAT
Sbjct: 117 LVGIKVVVPSKEFAQKHYHDLKERPFFSGLCDFLSSGPVIAMVWEGEGVIKYGRKLIGAT 176

Query: 180 DPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN 239
           DPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEI LWFKPE+LV+Y SNAEKW+Y  N
Sbjct: 177 DPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVSYASNAEKWIYGVN 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18416233|ref|NP_567690.1| nucleoside diphosphate kinase IV [Arabidopsis thaliana] gi|45477149|sp|Q8LAH8.2|NDK4_ARATH RecName: Full=Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial; Short=NDK IV; Short=NDP kinase IV; Short=NDPK IV; AltName: Full=Nucleoside diphosphate kinase 4; Flags: Precursor gi|4972094|emb|CAB43890.1| hypothetical protein [Arabidopsis thaliana] gi|7269239|emb|CAB81308.1| hypothetical protein [Arabidopsis thaliana] gi|11990430|dbj|BAB19789.1| nucleoside diphosphate kinase 4 [Arabidopsis thaliana] gi|26450853|dbj|BAC42534.1| unknown protein [Arabidopsis thaliana] gi|105829662|gb|ABF74700.1| At4g23900 [Arabidopsis thaliana] gi|332659424|gb|AEE84824.1| nucleoside diphosphate kinase IV [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21593387|gb|AAM65336.1| nucleoside diphosphate kinase 3 (ndpk3) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224058260|ref|XP_002299472.1| predicted protein [Populus trichocarpa] gi|222846730|gb|EEE84277.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147864944|emb|CAN83625.1| hypothetical protein VITISV_041718 [Vitis vinifera] gi|297742339|emb|CBI34488.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|334186865|ref|NP_001190817.1| Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana] gi|332659423|gb|AEE84823.1| Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224072202|ref|XP_002303650.1| predicted protein [Populus trichocarpa] gi|118486199|gb|ABK94942.1| unknown [Populus trichocarpa] gi|222841082|gb|EEE78629.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|19744167|dbj|BAB86842.1| NDPK III [Brassica rapa] Back     alignment and taxonomy information
>gi|15237018|ref|NP_192839.1| nucleoside diphosphate kinase III [Arabidopsis thaliana] gi|6225753|sp|O49203.1|NDK3_ARATH RecName: Full=Nucleoside diphosphate kinase III, chloroplastic/mitochondrial; Short=NDK III; Short=NDP kinase III; Short=NDPK III; Flags: Precursor gi|2829275|gb|AAC00512.1| nucleoside diphosphate kinase 3 [Arabidopsis thaliana] gi|3513740|gb|AAC33956.1| contains similarity to nucleoside diphosphate kinases (Pfam: NDK.hmm, score: 301.12) [Arabidopsis thaliana] gi|4539375|emb|CAB40069.1| nucleoside diphosphate kinase 3 (ndpk3) [Arabidopsis thaliana] gi|7267799|emb|CAB81202.1| nucleoside diphosphate kinase 3 (ndpk3) [Arabidopsis thaliana] gi|14334560|gb|AAK59688.1| putative nucleoside diphosphate kinase ndpk3 [Arabidopsis thaliana] gi|17065632|gb|AAL33810.1| putative nucleoside diphosphate kinase 3 [Arabidopsis thaliana] gi|332657561|gb|AEE82961.1| nucleoside diphosphate kinase III [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|294862567|gb|ADF45668.1| nucleoside diphosphate kinase 1 [Solanum tuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
TAIR|locus:2123421238 NDPK3 "nucleoside diphosphate 0.991 0.995 0.754 2e-95
TAIR|locus:2138101237 AT4G23900 [Arabidopsis thalian 0.991 1.0 0.740 1e-93
MGI|MGI:97356152 Nme2 "NME/NM23 nucleoside diph 0.631 0.993 0.629 7.4e-50
RGD|619877152 Nme2 "NME/NM23 nucleoside diph 0.631 0.993 0.629 9.5e-50
UNIPROTKB|Q32Q12292 NME1-NME2 "Nucleoside diphosph 0.631 0.517 0.629 1.2e-49
UNIPROTKB|P22392152 NME2 "Nucleoside diphosphate k 0.631 0.993 0.629 1.2e-49
UNIPROTKB|P52174152 NME1-1 "Nucleoside diphosphate 0.631 0.993 0.629 2e-49
UNIPROTKB|P52175152 NME1-2 "Nucleoside diphosphate 0.631 0.993 0.622 2e-49
RGD|70497152 Nme1 "NME/NM23 nucleoside diph 0.631 0.993 0.609 2e-49
UNIPROTKB|F1N910158 NME1 "Nucleoside diphosphate k 0.635 0.962 0.625 3.2e-49
TAIR|locus:2123421 NDPK3 "nucleoside diphosphate kinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 181/240 (75%), Positives = 205/240 (85%)

Query:     1 MSSQIVXXXXXXXXXXXXXXXXKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRA-GSS 59
             MSSQI                 KN+RF+SEGRA+ AAAAV+ SGK+P   S+F R+ GS 
Sbjct:     1 MSSQICRSASKAAKSLLSSA--KNARFFSEGRAIGAAAAVSASGKIPLYASNFARSSGSG 58

Query:    60 TASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFK 119
              AS+SW++G +A+PAAAY +Q+QEV AAEMERTFIAIKPDGVQRGLISEIISRFERKGFK
Sbjct:    59 VASKSWITGLLALPAAAYMIQDQEVLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFK 118

Query:   120 LVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGAT 179
             LV IK++VPSK+FAQKHYHDLKERPFFNGLC+FLSSGPVIAMVWEG+GVI YGRKLIGAT
Sbjct:   119 LVGIKVIVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGAT 178

Query:   180 DPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN 239
             DPQKSEPGTIRGDLAV VGRNIIHGSDGPETAKDEI LWFKP++LV+YTSN+EKW+Y  N
Sbjct:   179 DPQKSEPGTIRGDLAVTVGRNIIHGSDGPETAKDEISLWFKPQELVSYTSNSEKWLYGDN 238
GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0006165 "nucleoside diphosphate phosphorylation" evidence=IEA
GO:0006183 "GTP biosynthetic process" evidence=IEA
GO:0006228 "UTP biosynthetic process" evidence=IEA
GO:0006241 "CTP biosynthetic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0005743 "mitochondrial inner membrane" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0008270 "zinc ion binding" evidence=IDA
GO:0050897 "cobalt ion binding" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0019932 "second-messenger-mediated signaling" evidence=RCA
TAIR|locus:2138101 AT4G23900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:97356 Nme2 "NME/NM23 nucleoside diphosphate kinase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619877 Nme2 "NME/NM23 nucleoside diphosphate kinase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q32Q12 NME1-NME2 "Nucleoside diphosphate kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P22392 NME2 "Nucleoside diphosphate kinase B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P52174 NME1-1 "Nucleoside diphosphate kinase A 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P52175 NME1-2 "Nucleoside diphosphate kinase A 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|70497 Nme1 "NME/NM23 nucleoside diphosphate kinase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1N910 NME1 "Nucleoside diphosphate kinase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q46I11NDK_PROMT2, ., 7, ., 4, ., 60.65770.62340.9867yesno
Q7VEG3NDK_PROMA2, ., 7, ., 4, ., 60.65770.62340.9867yesno
Q116S1NDK_TRIEI2, ., 7, ., 4, ., 60.63080.62341.0yesno
Q0I6J3NDK_SYNS32, ., 7, ., 4, ., 60.64860.61920.9736yesno
Q7V3M8NDK_PROMP2, ., 7, ., 4, ., 60.63080.62340.9802yesno
Q5N1M1NDK_SYNP62, ., 7, ., 4, ., 60.63750.62341.0yesno
A5GPE9NDK_SYNPW2, ., 7, ., 4, ., 60.65540.61920.9736yesno
O49203NDK3_ARATH2, ., 7, ., 4, ., 60.79580.99160.9957nono
P81766NDK3_SPIOL2, ., 7, ., 4, ., 60.83660.64011.0N/Ano
Q50KA9NDKA_CANFA2, ., 7, ., 4, ., 60.60260.63170.9934yesno
Q8LAH8NDK4_ARATH2, ., 7, ., 4, ., 60.79070.99161.0yesno
Q31DD7NDK_PROM92, ., 7, ., 4, ., 60.66440.62340.9802yesno
A2CDK0NDK_PROM32, ., 7, ., 4, ., 60.65330.62760.9868yesno
Q8RXA8NDK4_SPIOL2, ., 7, ., 4, ., 60.78830.97480.9914N/Ano
Q5RFH3NDKB_PONAB2, ., 7, ., 1, 3, ., 30.62910.63170.9934yesno
Q2JVI1NDK_SYNJA2, ., 7, ., 4, ., 60.60400.62341.0yesno
A8G244NDK_PROM22, ., 7, ., 4, ., 60.65770.62340.9802yesno
Q01768NDKB_MOUSE2, ., 7, ., 1, 3, ., 30.62910.63170.9934yesno
Q7U3S1NDK_SYNPX2, ., 7, ., 4, ., 60.64420.62340.9867yesno
A2BZG4NDK_PROM12, ., 7, ., 4, ., 60.65100.62340.9867yesno
Q3AVV5NDK_SYNS92, ., 7, ., 4, ., 60.64420.62340.9867yesno
A2BNH4NDK_PROMS2, ., 7, ., 4, ., 60.66440.62340.9802yesno
B0C4I0NDK_ACAM12, ., 7, ., 4, ., 60.61740.62341.0yesno
P50590NDK_SYNE72, ., 7, ., 4, ., 60.63750.62341.0yesno
Q8TFN0NDK_EMENI2, ., 7, ., 4, ., 60.60810.61920.9673yesno
P52175NDKA2_BOVIN2, ., 7, ., 4, ., 60.62250.63170.9934yesno
P52174NDKA1_BOVIN2, ., 7, ., 4, ., 60.62910.63170.9934yesno
A3PA97NDK_PROM02, ., 7, ., 4, ., 60.66440.62340.9802yesno
B2IX22NDK_NOSP72, ., 7, ., 4, ., 60.62410.62341.0yesno
Q3AGP0NDK_SYNSC2, ., 7, ., 4, ., 60.63080.62340.9867yesno
P19804NDKB_RAT2, ., 7, ., 1, 3, ., 30.62910.63170.9934yesno
Q7V425NDK_PROMM2, ., 7, ., 4, ., 60.660.62760.9868yesno
A9B9E7NDK_PROM42, ., 7, ., 4, ., 60.62830.61920.9801yesno
A2BU01NDK_PROM52, ., 7, ., 4, ., 60.63750.62340.9802yesno
B8HUM7NDK_CYAP42, ., 7, ., 4, ., 60.61740.62341.0yesno
B0JHT4NDK_MICAN2, ., 7, ., 4, ., 60.61740.62341.0yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.40.983
4th Layer2.7.4.60.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
PLN02619238 PLN02619, PLN02619, nucleoside-diphosphate kinase 1e-163
cd04413130 cd04413, NDPk_I, Nucleoside diphosphate kinase Gro 9e-84
PTZ00093149 PTZ00093, PTZ00093, nucleoside diphosphate kinase, 2e-83
pfam00334135 pfam00334, NDK, Nucleoside diphosphate kinase 1e-82
PRK00668134 PRK00668, ndk, mulitfunctional nucleoside diphosph 5e-80
smart00562135 smart00562, NDK, Enzymes that catalyze nonsubstrat 1e-78
COG0105135 COG0105, Ndk, Nucleoside diphosphate kinase [Nucle 1e-72
cd00595133 cd00595, NDPk, Nucleoside diphosphate kinases (NDP 8e-53
PRK14540134 PRK14540, PRK14540, nucleoside diphosphate kinase; 1e-50
PRK14544183 PRK14544, PRK14544, nucleoside diphosphate kinase; 1e-36
PRK14541140 PRK14541, PRK14541, nucleoside diphosphate kinase; 1e-35
PRK14543169 PRK14543, PRK14543, nucleoside diphosphate kinase; 2e-34
PRK14542137 PRK14542, PRK14542, nucleoside diphosphate kinase; 2e-33
PRK14545139 PRK14545, PRK14545, nucleoside diphosphate kinase; 1e-31
PLN02931177 PLN02931, PLN02931, nucleoside diphosphate kinase 7e-25
cd04415131 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 d 1e-23
cd04414135 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (N 4e-23
cd04416132 cd04416, NDPk_TX, NDP kinase domain of thioredoxin 2e-21
cd04418132 cd04418, NDPk5, Nucleoside diphosphate kinase homo 4e-19
cd04412134 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 d 7e-17
>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase Back     alignment and domain information 
 Score =  450 bits (1158), Expect = e-163
 Identities = 205/240 (85%), Positives = 220/240 (91%), Gaps = 3/240 (1%)

Query: 1   MSSQIVRSASRAATARSLLSASKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRA-GSS 59
           MSSQI RSASRAA  RSLLS++KN+ F SEGRAV+AAAAV+  GK P L S+FGRA GSS
Sbjct: 1   MSSQICRSASRAA--RSLLSSAKNASFLSEGRAVAAAAAVSAGGKPPLLASAFGRATGSS 58

Query: 60  TASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFK 119
           TAS  W+SGA+A+PAA Y LQEQE HAAEMERTFIAIKPDGVQRGLISEIISRFERKGFK
Sbjct: 59  TASAQWISGALALPAAVYMLQEQEAHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFK 118

Query: 120 LVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGAT 179
           LVAIK+VVPSKEFAQKHYHDLKERPFFNGLC+FLSSGPV+AMVWEGEGVI YGRKLIGAT
Sbjct: 119 LVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGAT 178

Query: 180 DPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN 239
           DPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEI LWFKPE+LV+YTSNAEKW+Y  N
Sbjct: 179 DPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVSYTSNAEKWIYGVN 238

Length = 238
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate Back     alignment and domain information
>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic; Provisional Back     alignment and domain information
>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase Back     alignment and domain information
>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated Back     alignment and domain information
>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates Back     alignment and domain information
>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation Back     alignment and domain information
>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|237749 PRK14543, PRK14543, nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein Back     alignment and domain information
>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B Back     alignment and domain information
>gnl|CDD|239877 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues Back     alignment and domain information
>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively Back     alignment and domain information
>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species Back     alignment and domain information
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 239
PLN02619238 nucleoside-diphosphate kinase 100.0
PTZ00093149 nucleoside diphosphate kinase, cytosolic; Provisio 100.0
PRK14543169 nucleoside diphosphate kinase; Provisional 100.0
PRK14542137 nucleoside diphosphate kinase; Provisional 100.0
COG0105135 Ndk Nucleoside diphosphate kinase [Nucleotide tran 100.0
PRK14541140 nucleoside diphosphate kinase; Provisional 100.0
PRK14545139 nucleoside diphosphate kinase; Provisional 100.0
PRK14540134 nucleoside diphosphate kinase; Provisional 100.0
PRK00668134 ndk mulitfunctional nucleoside diphosphate kinase/ 100.0
PLN02931177 nucleoside diphosphate kinase family protein 100.0
cd04415131 NDPk7A Nucleoside diphosphate kinase 7 domain A (N 100.0
cd04418132 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP 100.0
cd04413130 NDPk_I Nucleoside diphosphate kinase Group I (NDPk 100.0
PF00334135 NDK: Nucleoside diphosphate kinase; InterPro: IPR0 100.0
cd04414135 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 100.0
cd04412134 NDPk7B Nucleoside diphosphate kinase 7 domain B (N 100.0
cd00595133 NDPk Nucleoside diphosphate kinases (NDP kinases, 100.0
KOG0888156 consensus Nucleoside diphosphate kinase [Nucleotid 100.0
cd04416132 NDPk_TX NDP kinase domain of thioredoxin domain-co 100.0
smart00562135 NDK These are enzymes that catalyze nonsubstrate s 100.0
PRK14544183 nucleoside diphosphate kinase; Provisional 100.0
>PLN02619 nucleoside-diphosphate kinase Back     alignment and domain information 
Probab=100.00  E-value=8.2e-74  Score=505.84  Aligned_cols=237  Identities=86%  Similarity=1.307  Sum_probs=233.6

Q ss_pred             CchHHHHHhhHHHHHHhhhhhcccccccccchhhhhhhhhhccCCcchhhhhhcc-cCCcchhhhhhhhhhhhhhhhhhh
Q 026399            1 MSSQIVRSASRAATARSLLSASKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGR-AGSSTASRSWLSGAIAIPAAAYTL   79 (239)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   79 (239)
                      |+|||||+++|+  ||++++++++++++.+||++++++++++++|.|++++.|+. +++++++.+|+++++++||++||+
T Consensus         1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (238)
T PLN02619          1 MSSQICRSASRA--ARSLLSSAKNASFLSEGRAVAAAAAVSAGGKPPLLASAFGRATGSSTASAQWISGALALPAAVYML   78 (238)
T ss_pred             CchHHHHHHHHH--HHHHHHHHhhhhhhhcchHHHHHHHHHcCCCCchHHHHHHhhcCCCchHHHHHHHhhcchhhhhhc
Confidence            899999999999  99999999999999999999999999999999999999988 899999999999999999999999


Q ss_pred             hhhhhhhhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEE
Q 026399           80 QEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVI  159 (239)
Q Consensus        80 ~~~~~l~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvv  159 (239)
                      ||++.+...+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++
T Consensus        79 ~~~~~~a~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvv  158 (238)
T PLN02619         79 QEQEAHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVV  158 (238)
T ss_pred             cccccccchhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCHHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCccccccCC
Q 026399          160 AMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN  239 (239)
Q Consensus       160 aL~L~G~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~~~  239 (239)
                      +|+|+|+|+|++||++||||||.++.|+|||++||.+.++|+|||||++|+|++||+|||+++|+.+|.++.++|+|++|
T Consensus       159 amvL~GenaV~~~R~LiGpTdP~~A~PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI~~fF~~~ei~~y~~~~~~~~y~~~  238 (238)
T PLN02619        159 AMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVSYTSNAEKWIYGVN  238 (238)
T ss_pred             EEEEECCcHHHHHHHHhCCCCccccCCCcchhhhcccccceeeecCCCHHHHHHHHHHhCCHHhccCCcccchhhhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998

>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional Back     alignment and domain information
>PRK14543 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>PRK14542 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14541 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>PRK14545 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>PRK14540 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated Back     alignment and domain information
>PLN02931 nucleoside diphosphate kinase family protein Back     alignment and domain information
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B Back     alignment and domain information
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species Back     alignment and domain information
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate Back     alignment and domain information
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2 Back     alignment and domain information
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues Back     alignment and domain information
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B Back     alignment and domain information
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation Back     alignment and domain information
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively Back     alignment and domain information
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates Back     alignment and domain information
>PRK14544 nucleoside diphosphate kinase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
1w7w_A182 Structure And Mutational Analysis Of A Plant Mitoch 9e-81
3l7u_A172 Crystal Structure Of Human Nm23-H1 Length = 172 6e-55
1bhn_A152 Nucleoside Diphosphate Kinase Isoform A From Bovine 2e-54
1nsk_R152 The Crystal Structure Of A Human Nucleoside Diphosp 2e-54
1be4_A151 Nucleoside Diphosphate Kinase Isoform B From Bovine 2e-54
1nue_A151 X-ray Structure Of Nm23 Human Nucleoside Diphosphat 2e-54
1jxv_A152 Crystal Structure Of Human Nucleoside Diphosphate K 5e-54
3bbc_A151 Crystal Structure Of R88a Mutant Of The Nm23-H2 Tra 1e-53
2hve_A152 S120g Mutant Of Human Nucleoside Diphosphate Kinase 2e-53
3prv_A157 Nucleoside Diphosphate Kinase B From Trypanosoma Cr 1e-52
1ucn_A152 X-Ray Structure Of Human Nucleoside Diphosphate Kin 4e-52
1ndl_A153 The Awd Nucleotide Diphosphate Kinase From Drosophi 1e-51
3ngr_A151 Crystal Structure Of Leishmania Nucleoside Diphosph 8e-51
1u8w_A149 Crystal Structure Of Arabidopsis Thaliana Nucleosid 1e-50
1nsq_A153 Mechanism Of Phosphate Transfer By Nucleoside Dipho 1e-50
3r9l_A155 Crystal Structure Of Nucleoside Diphosphate Kinase 1e-50
4fkx_A161 Crystal Structure Of Nucleoside Diphosphate Kinase 2e-50
4f36_A157 Crystal Structure Of Nucleoside Diphosphate Kinase 2e-50
1pku_A150 Crystal Structure Of Nucleoside Diphosphate Kinase 1e-48
1s57_A153 Crystal Structure Of Nucleoside Diphosphate Kinase 2e-48
1zs6_A169 Structure Of Human Nucleoside-diphosphate Kinase 3 2e-48
3b54_A161 Saccharomyces Cerevisiae Nucleoside Diphosphate Kin 3e-48
1npk_A154 Refined X-Ray Structure Of Dictyostelium Nucleoside 1e-47
1ndp_A155 Adenosine 5'-Diphosphate Binding And The Active Sit 1e-47
1hhq_A155 Role Of Active Site Resiude Lys16 In Nucleoside Dip 4e-47
1lwx_A155 Azt Diphosphate Binding To Nucleoside Diphosphate K 7e-47
1hlw_A155 Structure Of The H122a Mutant Of The Nucleoside Dip 1e-46
1leo_A150 P100s Nucleoside Diphosphate Kinase Length = 150 1e-46
1b4s_A155 Structure Of Nucleoside Diphosphate Kinase H122g Mu 1e-46
1nsp_A155 Mechanism Of Phosphate Transfer By Nucleoside Dipho 1e-46
1ndk_A155 X-Ray Structure Of Nucleoside Diphosphate Kinase Le 2e-46
1ncl_A150 Thermal Stability Of Hexameric And Tetrameric Nucle 2e-46
1pae_X155 Nucleoside Diphosphate Kinase Length = 155 3e-45
1xiq_A157 Plasmodium Falciparum Nucleoside Diphosphate Kinase 5e-45
1mn7_A155 Ndp Kinase Mutant (H122g;n119s;f64w) In Complex Wit 6e-45
2vu5_A148 Crystal Structure Of Pndk From Bacillus Anthracis L 7e-45
1wkj_A137 Crystal Structure Of Nucleoside Diphosphate Kinase 2e-43
3q83_A157 Crystal Structure Of Staphylococcus Aureus Nucleosi 3e-43
2zua_A174 Crystal Structure Of Nucleoside Diphosphate Kinase 4e-42
3js9_A156 Crystal Structure Of Nucleoside Diphosphate Kinase 1e-41
1ehw_A162 Human Nucleoside Diphosphate Kinase 4 Length = 162 1e-40
2az3_A164 Structure Of A Halophilic Nucleoside Diphosphate Ki 2e-40
2az1_A181 Structure Of A Halophilic Nucleoside Diphosphate Ki 4e-40
2cwk_A160 Crystal Structure Of Nucleotide Diphosphate Kinase 2e-38
3mpd_A151 Crystal Structure Of Nucleoside Diphosphate Kinase 6e-38
1k44_A136 Mycobacterium Tuberculosis Nucleoside Diphosphate K 3e-34
3pj9_A140 Crystal Structure Of A Nucleoside Diphosphate Kinas 3e-33
3ddi_A146 Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R1 6e-33
3vgs_A141 Wild-Type Nucleoside Diphosphate Kinase Derived Fro 2e-32
3vgu_A141 E134a Mutant Nucleoside Diphosphate Kinase Derived 2e-32
3emt_A146 Crystal Structure Of The Mimivirus Ndk +kpn-R107g D 5e-32
3em1_A146 Crystal Structure Of The Mimivirus Ndk +kpn-N62l Do 5e-32
4dut_A145 The Structure Of Nucleoside Diphosphate Kinase (Ndk 5e-32
3ejm_A146 Crystal Structure Of The Mimivirus Ndk +kpn Mutant 3e-31
2nck_R144 Crystal Structure Of Myxococcus Xanthus Nucleoside 5e-31
1nb2_A150 Crystal Structure Of Nucleoside Diphosphate Kinase 6e-31
3fbe_A142 Crystal Structure Of The Mimivirus Ndk N62l-R107g D 4e-29
3evw_A142 Crystal Structure Of The Mimivirus Ndk R107g Mutant 3e-28
3fbf_A142 Crystal Structure Of The Mimivirus Ndk N62l Mutant 3e-28
2b8p_A157 Crystal Structure Of Acanthamoeba Polyphaga Mimivir 1e-27
2b8q_A142 X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus 2e-27
4di6_A190 Crystal Structure Of Nucleoside-Diphosphate Kinase 2e-26
2hur_A142 Escherichia Coli Nucleoside Diphosphate Kinase Leng 5e-26
3ztq_A142 Hexagonal Crystal Form P61 Of The Aquifex Aeolicus 1e-25
1xqi_A195 Crystal Structure Analysis Of An Ndp Kinase From Py 5e-21
>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial Nucleoside Diphosphate Kinase: Identification Of Residues Involved In Serine Phosphorylation And Oligomerization. Length = 182 Back     alignment and structure 
Iteration: 1

 Score =  296 bits (757), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 136/153 (88%), Positives = 149/153 (97%)
Query: 87  AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
           AE+ERTFIAIKPDGVQRGLISEIISRFERKGFKLV IK+++P+K+FAQ+HYHDLKERPFF
Sbjct: 30  AELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFF 89
Query: 147 NGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 206
           NGLC+FLSSGPVIAMVWEGEGVITYGRKLIGATDPQKS PGTIRGDLAVVVGRNIIHGSD
Sbjct: 90  NGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSD 149
Query: 207 GPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN 239
           GPETAKDEIKLWFKPE+LV++TSN+EKW+Y  N
Sbjct: 150 GPETAKDEIKLWFKPEELVSFTSNSEKWIYGDN 182
>pdb|3L7U|A Chain A, Crystal Structure Of Human Nm23-H1 Length = 172 Back     alignment and structure
>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina Length = 152 Back     alignment and structure
>pdb|1NSK|R Chain R, The Crystal Structure Of A Human Nucleoside Diphosphate Kinase, Nm23-H2 Length = 152 Back     alignment and structure
>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina Length = 151 Back     alignment and structure
>pdb|1NUE|A Chain A, X-ray Structure Of Nm23 Human Nucleoside Diphosphate Kinase B Complexed With Gdp At 2 Angstroms Resolution Length = 151 Back     alignment and structure
>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase A Length = 152 Back     alignment and structure
>pdb|3BBC|A Chain A, Crystal Structure Of R88a Mutant Of The Nm23-H2 Transcription Factor Length = 151 Back     alignment and structure
>pdb|2HVE|A Chain A, S120g Mutant Of Human Nucleoside Diphosphate Kinase A Complexed With Adp Length = 152 Back     alignment and structure
>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi Length = 157 Back     alignment and structure
>pdb|1UCN|A Chain A, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A Complexed With Adp At 2 A Resolution Length = 152 Back     alignment and structure
>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila Length = 153 Back     alignment and structure
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate Kinase B With Unordered Nucleotide-Binding Loop. Length = 151 Back     alignment and structure
>pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside Diphosphate Kinase 1 Length = 149 Back     alignment and structure
>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate Kinase: X- Ray Structures Of A Phospho-Histidine Intermediate Of The Enzymes From Drosophila And Dictyostelium Length = 153 Back     alignment and structure
>pdb|3R9L|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Giardia Lamblia Featuring A Disordered Dinucleotide Binding Site Length = 155 Back     alignment and structure
>pdb|4FKX|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From Trypanosoma Brucei Bound To Cdp Length = 161 Back     alignment and structure
>pdb|4F36|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From Trypanosoma Brucei, Apo Form Length = 157 Back     alignment and structure
>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Rice Length = 150 Back     alignment and structure
>pdb|1S57|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From Arabidopsis Length = 153 Back     alignment and structure
>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3 Length = 169 Back     alignment and structure
>pdb|3B54|A Chain A, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase Length = 161 Back     alignment and structure
>pdb|1NPK|A Chain A, Refined X-Ray Structure Of Dictyostelium Nucleoside Diphosphate Kinase At 1,8 Angstroms Resolution Length = 154 Back     alignment and structure
>pdb|1NDP|A Chain A, Adenosine 5'-Diphosphate Binding And The Active Site Of Nucleoside Diphosphate Kinase Length = 155 Back     alignment and structure
>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside Diphosphate Kinase Length = 155 Back     alignment and structure
>pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase Length = 155 Back     alignment and structure
>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside Diphosphate Kinase Length = 155 Back     alignment and structure
>pdb|1LEO|A Chain A, P100s Nucleoside Diphosphate Kinase Length = 150 Back     alignment and structure
>pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant Length = 155 Back     alignment and structure
>pdb|1NSP|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate Kinase: X- Ray Structures Of A Phospho-Histidine Intermediate Of The Enzymes From Drosophila And Dictyostelium Length = 155 Back     alignment and structure
>pdb|1NDK|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase Length = 155 Back     alignment and structure
>pdb|1NCL|A Chain A, Thermal Stability Of Hexameric And Tetrameric Nucleoside, Diphosphate Kinases Length = 150 Back     alignment and structure
>pdb|1PAE|X Chain X, Nucleoside Diphosphate Kinase Length = 155 Back     alignment and structure
>pdb|1XIQ|A Chain A, Plasmodium Falciparum Nucleoside Diphosphate Kinase B Length = 157 Back     alignment and structure
>pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With Abazttp Length = 155 Back     alignment and structure
>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis Length = 148 Back     alignment and structure
>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Thermus Thermophilus Hb8 Length = 137 Back     alignment and structure
>pdb|3Q83|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside Diphosphate Kinase Length = 157 Back     alignment and structure
>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Haloarcula Quadrata Length = 174 Back     alignment and structure
>pdb|3JS9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase Family Protein From Babesia Bovis Length = 156 Back     alignment and structure
>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4 Length = 162 Back     alignment and structure
>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase From Halobacterium Salinarum In Complex With Cdp Length = 164 Back     alignment and structure
>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase From Halobacterium Salinarum Length = 181 Back     alignment and structure
>pdb|2CWK|A Chain A, Crystal Structure Of Nucleotide Diphosphate Kinase From Pyrococcus Horikoshii Length = 160 Back     alignment and structure
>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Encephalitozoon Cuniculi, Cubic Form, Apo Length = 151 Back     alignment and structure
>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase Length = 136 Back     alignment and structure
>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase From Campylobacter Jejuni Length = 140 Back     alignment and structure
>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g Triple Mutant Complexed With Tdp Length = 146 Back     alignment and structure
>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From Halomonas Sp. 593 Length = 141 Back     alignment and structure
>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From Halomonas Sp. 593 Length = 141 Back     alignment and structure
>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double Mutant Complexed With Dgdp Length = 146 Back     alignment and structure
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double Mutant Complexed With Dtdp Length = 146 Back     alignment and structure
>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From Burkholderia Thailandensis Length = 145 Back     alignment and structure
>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant Complexed With Gdp Length = 146 Back     alignment and structure
>pdb|2NCK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside Diphosphate Kinase And Its Interaction With A Nucleotide Substrate At 2.0 Angstroms Resolution Length = 144 Back     alignment and structure
>pdb|1NB2|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Bacillus Halodenitrificans Length = 150 Back     alignment and structure
>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double Mutant Complexed With Gdp Length = 142 Back     alignment and structure
>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant Complexed With Dtdp Length = 142 Back     alignment and structure
>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant Complexed With Dtdp Length = 142 Back     alignment and structure
>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk, The First Viral Nucleoside Diphosphate Kinase Length = 157 Back     alignment and structure
>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus Nucleoside Diphosphate Kinase Complexed With Tdp Length = 142 Back     alignment and structure
>pdb|4DI6|A Chain A, Crystal Structure Of Nucleoside-Diphosphate Kinase From Borrelia Burgdorferi Length = 190 Back     alignment and structure
>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase Length = 142 Back     alignment and structure
>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus Nucleoside Diphosphate Kinase Length = 142 Back     alignment and structure
>pdb|1XQI|A Chain A, Crystal Structure Analysis Of An Ndp Kinase From Pyrobaculum Aerophilum Length = 195 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
1w7w_A182 Nucleoside diphosphate kinase; NDPK3, transferase; 1e-102
3l7u_A172 Nucleoside diphosphate kinase A; ATP-binding, nucl 1e-101
4fkx_A161 NDK B, nucleoside diphosphate kinase; structural g 1e-101
1s57_A153 Nucleoside diphosphate kinase II; transferase; HET 1e-100
3bbb_A151 Nucleoside diphosphate kinase B; transcription fac 1e-100
3js9_A156 Nucleoside diphosphate kinase family protein; niai 1e-100
3b54_A161 NDK, NDP kinase, nucleoside diphosphate kinase; al 1e-100
3q8u_A157 Nucleoside diphosphate kinase; ferridoxin fold, al 1e-100
1xiq_A157 Nucleoside diphosphate kinase B; protein structure 1e-100
3r9l_A155 Nucleoside diphosphate kinase; structural genomics 1e-100
1zs6_A169 Nucleoside diphosphate kinase 3; nucleotide metabo 1e-100
2vu5_A148 Nucleoside diphosphate kinase; nucleotide-binding, 4e-99
1pku_A150 Nucleoside diphosphate kinase I; RICE, transferase 1e-98
1nb2_A150 Nucleoside diphosphate kinase; bacillus halodenitr 1e-98
1u8w_A149 Nucleoside diphosphate kinase I; nucleotide diphos 2e-98
2az3_A164 Nucleoside diphosphate kinase; halophilic, transfe 2e-97
3mpd_A151 Nucleoside diphosphate kinase; ssgcid, NIH, niaid, 3e-97
3fkb_A155 NDP kinase, NDK, nucleoside diphosphate kinase, cy 3e-97
1ehw_A162 NDPK H4, nucleoside diphosphate kinase; NM23, mito 4e-95
2dxe_A160 Nucleoside diphosphate kinase; nucleoside binding, 5e-95
1nhk_R144 Nucleoside diphosphate kinase; phosphotransferase; 2e-93
2hur_A142 NDK, nucleoside diphosphate kinase, NDP kinase; ty 3e-93
1wkj_A137 Nucleoside diphosphate kinase; thermus thermophilu 5e-92
3evo_A146 NDP kinase, NDK, nucleoside diphosphate kinase; ph 5e-92
4dz6_A190 Nucleoside diphosphate kinase; ssgcid, niaid, vana 1e-91
4ek2_A145 Nucleoside diphosphate kinase; seattle structural 8e-91
3ztp_A142 Nucleoside diphosphate kinase; transferase; HET: G 4e-88
1k44_A136 Nucleoside diphosphate kinase; nucleoside triphosp 4e-87
1xqi_A195 Nucleoside diphosphate kinase; alpha/beta sandwich 5e-77
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1 Length = 182 Back     alignment and structure
 Score =  293 bits (752), Expect = e-102
 Identities = 138/179 (77%), Positives = 151/179 (84%), Gaps = 1/179 (0%)

Query: 62  SRSWLSGAIAIPA-AAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKL 120
                      P       Q      AE+ERTFIAIKPDGVQRGLISEIISRFERKGFKL
Sbjct: 4   YHHHHHHDYDYPTTENLYFQGAMDPEAELERTFIAIKPDGVQRGLISEIISRFERKGFKL 63

Query: 121 VAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATD 180
           V IK+++P+K+FAQ+HYHDLKERPFFNGLC+FLSSGPVIAMVWEGEGVITYGRKLIGATD
Sbjct: 64  VGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATD 123

Query: 181 PQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN 239
           PQKS PGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPE+LV++TSN+EKW+Y  N
Sbjct: 124 PQKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVSFTSNSEKWIYGDN 182
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens} Length = 172 Back     alignment and structure
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A* Length = 161 Back     alignment and structure
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A* Length = 153 Back     alignment and structure
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A* Length = 151 Back     alignment and structure
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} Length = 156 Back     alignment and structure
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae} Length = 161 Back     alignment and structure
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A* Length = 157 Back     alignment and structure
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1 Length = 157 Back     alignment and structure
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} Length = 155 Back     alignment and structure
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1 Length = 169 Back     alignment and structure
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis} Length = 148 Back     alignment and structure
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1 Length = 150 Back     alignment and structure
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1 Length = 150 Back     alignment and structure
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1 Length = 149 Back     alignment and structure
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A Length = 164 Back     alignment and structure
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} Length = 151 Back     alignment and structure
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ... Length = 155 Back     alignment and structure
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1 Length = 162 Back     alignment and structure
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A* Length = 160 Back     alignment and structure
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A Length = 144 Back     alignment and structure
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli} Length = 142 Back     alignment and structure
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A* Length = 137 Back     alignment and structure
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ... Length = 146 Back     alignment and structure
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A* Length = 190 Back     alignment and structure
>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center for infectious disease, S DAMP, niaid; HET: DA; 2.00A {Burkholderia thailandensis} PDB: 4dut_A* Length = 145 Back     alignment and structure
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A Length = 142 Back     alignment and structure
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1 Length = 136 Back     alignment and structure
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1 Length = 195 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
3q8u_A157 Nucleoside diphosphate kinase; ferridoxin fold, al 100.0
4fkx_A161 NDK B, nucleoside diphosphate kinase; structural g 100.0
3l7u_A172 Nucleoside diphosphate kinase A; ATP-binding, nucl 100.0
3mpd_A151 Nucleoside diphosphate kinase; ssgcid, NIH, niaid, 100.0
1w7w_A182 Nucleoside diphosphate kinase; NDPK3, transferase; 100.0
2vu5_A148 Nucleoside diphosphate kinase; nucleotide-binding, 100.0
3r9l_A155 Nucleoside diphosphate kinase; structural genomics 100.0
1xiq_A157 Nucleoside diphosphate kinase B; protein structure 100.0
1nb2_A150 Nucleoside diphosphate kinase; bacillus halodenitr 100.0
1s57_A153 Nucleoside diphosphate kinase II; transferase; HET 100.0
3bbb_A151 Nucleoside diphosphate kinase B; transcription fac 100.0
1u8w_A149 Nucleoside diphosphate kinase I; nucleotide diphos 100.0
3fkb_A155 NDP kinase, NDK, nucleoside diphosphate kinase, cy 100.0
3js9_A156 Nucleoside diphosphate kinase family protein; niai 100.0
1pku_A150 Nucleoside diphosphate kinase I; RICE, transferase 100.0
3b54_A161 NDK, NDP kinase, nucleoside diphosphate kinase; al 100.0
1zs6_A169 Nucleoside diphosphate kinase 3; nucleotide metabo 100.0
2az3_A164 Nucleoside diphosphate kinase; halophilic, transfe 100.0
4hr2_A145 Nucleoside diphosphate kinase; ssgcid, seattle str 100.0
2dxe_A160 Nucleoside diphosphate kinase; nucleoside binding, 100.0
4dz6_A190 Nucleoside diphosphate kinase; ssgcid, niaid, vana 100.0
2hur_A142 NDK, nucleoside diphosphate kinase, NDP kinase; ty 100.0
1nhk_R144 Nucleoside diphosphate kinase; phosphotransferase; 100.0
3evo_A146 NDP kinase, NDK, nucleoside diphosphate kinase; ph 100.0
1wkj_A137 Nucleoside diphosphate kinase; thermus thermophilu 100.0
3ztp_A142 Nucleoside diphosphate kinase; transferase; HET: G 100.0
1ehw_A162 NDPK H4, nucleoside diphosphate kinase; NM23, mito 100.0
1k44_A136 Nucleoside diphosphate kinase; nucleoside triphosp 100.0
1xqi_A195 Nucleoside diphosphate kinase; alpha/beta sandwich 100.0
3bh7_B352 Protein XRP2; protein-protein complex, GTPase acti 99.97
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A* Back     alignment and structure
Probab=100.00  E-value=1e-53  Score=357.86  Aligned_cols=149  Identities=52%  Similarity=0.951  Sum_probs=147.3

Q ss_pred             hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399           89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV  168 (239)
Q Consensus        89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA  168 (239)
                      +|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+||
T Consensus         1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na   80 (157)
T 3q8u_A            1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA   80 (157)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred             CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399          169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE  237 (239)
Q Consensus       169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~  237 (239)
                      |+.||+++|||||.++.|+|||++||.+..+|+|||||++++|++||++||++.|+.+|.+..+.|+|.
T Consensus        81 V~~~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~  149 (157)
T 3q8u_A           81 VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE  149 (157)
T ss_dssp             HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGCCCCCCTTHHHHCC
T ss_pred             HHHHHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeCCCHHHHHHHHHHcCChHhhcccccchHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999996
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A* Back     alignment and structure
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens} Back     alignment and structure
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0 Back     alignment and structure
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1 Back     alignment and structure
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis} Back     alignment and structure
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1 Back     alignment and structure
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1 Back     alignment and structure
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1 Back     alignment and structure
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A* Back     alignment and structure
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A* Back     alignment and structure
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1 Back     alignment and structure
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ... Back     alignment and structure
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0 Back     alignment and structure
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1 Back     alignment and structure
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae} Back     alignment and structure
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1 Back     alignment and structure
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A Back     alignment and structure
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A* Back     alignment and structure
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A* Back     alignment and structure
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A* Back     alignment and structure
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli} Back     alignment and structure
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A Back     alignment and structure
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ... Back     alignment and structure
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A* Back     alignment and structure
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A Back     alignment and structure
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1 Back     alignment and structure
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1 Back     alignment and structure
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1 Back     alignment and structure
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 239
d3bbba1150 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, 3e-66
d1s57a_153 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 3e-65
d1w7wa_151 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 7e-65
d1zs6a1152 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, 2e-63
d1xiqa_149 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 1e-62
d1wkja1137 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, 3e-60
d2az3a1152 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, 5e-60
d1u8wa_149 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 9e-59
d1hlwa_150 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 2e-58
d1ehwa_143 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 2e-57
d1xqia1182 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, 1e-56
d1nhkl_143 d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK { 1e-56
d1nb2a_149 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 1e-56
d2dyaa1153 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, 9e-55
d1k44a_135 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 9e-50
d2b8qa1128 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, 2e-42
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]} Length = 150 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  200 bits (509), Expect = 3e-66
 Identities = 94/150 (62%), Positives = 120/150 (80%)

Query: 87  AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
           A +ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K +  S+E  ++HY DLK+RPFF
Sbjct: 1   ANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFF 60

Query: 147 NGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 206
            GL ++++SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGRNIIHGSD
Sbjct: 61  PGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 120

Query: 207 GPETAKDEIKLWFKPEDLVNYTSNAEKWVY 236
             ++A+ EI LWFKPE+LV+Y S A  WVY
Sbjct: 121 SVKSAEKEISLWFKPEELVDYKSCAHDWVY 150
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]} Length = 153 Back     information, alignment and structure
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]} Length = 151 Back     information, alignment and structure
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 149 Back     information, alignment and structure
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]} Length = 137 Back     information, alignment and structure
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]} Length = 152 Back     information, alignment and structure
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Dictyostelium discoideum [TaxId: 44689]} Length = 150 Back     information, alignment and structure
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens), NDK4 [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 182 Back     information, alignment and structure
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {Myxococcus xanthus [TaxId: 34]} Length = 143 Back     information, alignment and structure
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]} Length = 149 Back     information, alignment and structure
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 153 Back     information, alignment and structure
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135 Back     information, alignment and structure
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]} Length = 128 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
d1w7wa_151 Nucleoside diphosphate kinase, NDK {Pea (Pisum sat 100.0
d1nb2a_149 Nucleoside diphosphate kinase, NDK {Bacillus halod 100.0
d3bbba1150 Nucleoside diphosphate kinase, NDK {Human (Homo sa 100.0
d1zs6a1152 Nucleoside diphosphate kinase, NDK {Human(Homo sap 100.0
d1s57a_153 Nucleoside diphosphate kinase, NDK {Thale cress (A 100.0
d1xiqa_149 Nucleoside diphosphate kinase, NDK {Plasmodium fal 100.0
d1u8wa_149 Nucleoside diphosphate kinase, NDK {Thale cress (A 100.0
d2az3a1152 Nucleoside diphosphate kinase, NDK {Archaeon Halob 100.0
d1ehwa_143 Nucleoside diphosphate kinase, NDK {Human (Homo sa 100.0
d1hlwa_150 Nucleoside diphosphate kinase, NDK {Dictyostelium 100.0
d2dyaa1153 Nucleoside diphosphate kinase, NDK {Archaeon Pyroc 100.0
d1nhkl_143 Nucleoside diphosphate kinase, NDK {Myxococcus xan 100.0
d1wkja1137 Nucleoside diphosphate kinase, NDK {Thermus thermo 100.0
d1k44a_135 Nucleoside diphosphate kinase, NDK {Mycobacterium 100.0
d1xqia1182 Nucleoside diphosphate kinase, NDK {Archaeon Pyrob 100.0
d2b8qa1128 Nucleoside diphosphate kinase, NDK {Mimivirus [Tax 100.0
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=3.6e-54  Score=356.49  Aligned_cols=150  Identities=89%  Similarity=1.479  Sum_probs=148.4

Q ss_pred             hhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecC
Q 026399           88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEG  167 (239)
Q Consensus        88 ~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~n  167 (239)
                      ++|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|++||+||||++|+|+|+|
T Consensus         2 ~~E~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~Iv~~k~~~lt~e~a~~~Y~~~~~k~ff~~lv~~mtsGpv~al~l~g~n   81 (151)
T d1w7wa_           2 ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEG   81 (151)
T ss_dssp             TTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred             CcceEEEEECchhhhcCCHHHHHHHHHHCCCEEEEEEEEecCHHHHHHHHHHHHccccccchhhhccCCCEeeEeeccch
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399          168 VITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE  237 (239)
Q Consensus       168 AV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~  237 (239)
                      ||+.||++||||||.++.|+|||++||.+.++|+|||||++++|++|+++|||++|+.+|.++.|.|+||
T Consensus        82 aV~~~r~l~Gptdp~~a~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~ei~~~~~~~~~~~~~  151 (151)
T d1w7wa_          82 VITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVSFTSNSEKWIYG  151 (151)
T ss_dssp             HHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHCCGGGCCCCCCTTHHHHTC
T ss_pred             hHHHHHHHhccCCccccCCCchhHhhccccCCceeeCCCCHHHHHHHHHHccChhhceeccccCcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]} Back     information, alignment and structure
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]} Back     information, alignment and structure
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]} Back     information, alignment and structure
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Back     information, alignment and structure
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]} Back     information, alignment and structure
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens), NDK4 [TaxId: 9606]} Back     information, alignment and structure
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]} Back     information, alignment and structure