Citrus Sinensis ID: 026426

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVWLVACGGFKC
cccccEEEEEEEcccEEEEEEccccccHHHHHHHHHHcccccccEEEEEEccEEEEEEEEccEEEEEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccccEEEEEEEEcccEEEEEEccccccHHHHHHHHHHHcccccccEEEEcccEEEEEEEcccEEEEEEEccHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MNQKGLIYSFVSKGTVVLAEhtsysgnfSTIAIQCLQklpassskytyscdghtfnflLDSGFVFLVVAdesvgrsvpfVFLERVKDDFKQRygasiqneeshpladddedddLFEDRFSIAYNldrefgprlKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVWLVACGGFKC
MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGasiqneeshpladdDEDDDLFEDRFSIAYnldrefgpRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVdktenlqfqadsfqrqgRQLRRRMWLQNLQMKLMVGGAVIAFIIIVWLVACGGFKC
MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAdddedddlfedRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMvggaviafiiivWLVACGGFKC
****GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRY*********************FEDRFSIAYNLDREFGPRLKEHMQYC***************QITEVKGIMMDNIEKVLDRGERIE************************RRMWLQNLQMKLMVGGAVIAFIIIVWLVACGGF**
**QKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQ**************ADDDEDDDLFEDRFSIAYNLDREFGPRLK**********************************EKVLDR*******************************MWLQNLQMKLMVGGAVIAFIIIVWLVACGGFKC
MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVWLVACGGFKC
**QKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGAS*Q***SHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVWLVACGGFKC
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MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVWLVACGGFKC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query238 2.2.26 [Sep-21-2011]
Q9M376240 Vesicle-associated membra yes no 1.0 0.991 0.886 1e-122
Q9MAS5220 Putative vesicle-associat no no 0.920 0.995 0.558 3e-75
O48850285 Vesicle-associated membra no no 0.920 0.768 0.567 5e-74
P47192221 Vesicle-associated membra no no 0.920 0.990 0.563 2e-73
Q9ZTW3219 Vesicle-associated membra no no 0.920 1.0 0.563 2e-72
O23429222 Vesicle-associated membra no no 0.920 0.986 0.485 9e-64
Q8VY69217 Vesicle-associated membra no no 0.903 0.990 0.470 2e-54
Q9LFP1221 Vesicle-associated membra no no 0.882 0.950 0.339 5e-36
O49377219 Vesicle-associated membra no no 0.785 0.853 0.354 3e-34
Q9FMR5221 Vesicle-associated membra no no 0.882 0.950 0.309 6e-34
>sp|Q9M376|VA727_ARATH Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1 Back     alignment and function desciption
 Score =  436 bits (1121), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/238 (88%), Positives = 229/238 (96%)

Query: 1   MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLD 60
           M+QKGLIYSFV+KGTVVLAEHT YSGNFSTIA+QCLQKLP +SSKYTYSCDGHTFNFL+D
Sbjct: 1   MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVD 60

Query: 61  SGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFS 120
           +GFVFLVVADES GRSVPFVFLERVK+DFK+RY ASI+N+E HPLAD+DEDDDLF DRFS
Sbjct: 61  NGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFS 120

Query: 121 IAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIEL 180
           +AYNLDREFGP LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGE+IEL
Sbjct: 121 VAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIEL 180

Query: 181 LVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVWLVACGGFKC 238
           LVDKTENLQFQADSFQRQGRQLRR+MWLQ+LQMKLMV GAV +FI+IVW+VACGGFKC
Sbjct: 181 LVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKC 238
Involved in the targeting and/or fusion of transport vesicles to their target membrane.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=3 SV=2 Back     alignment and function description
>sp|O48850|VA725_ARATH Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2 Back     alignment and function description
>sp|P47192|VA722_ARATH Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZTW3|VA721_ARATH Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=1 SV=1 Back     alignment and function description
>sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2 Back     alignment and function description
>sp|Q8VY69|VA723_ARATH Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFP1|VA713_ARATH Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1 Back     alignment and function description
>sp|O49377|VA711_ARATH Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2 Back     alignment and function description
>sp|Q9FMR5|VA714_ARATH Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
297820170240 ATVAMP727 [Arabidopsis lyrata subsp. lyr 1.0 0.991 0.890 1e-121
15232475240 vesicle-associated membrane protein 727 1.0 0.991 0.886 1e-120
224097602238 predicted protein [Populus trichocarpa] 0.991 0.991 0.869 1e-118
358346334238 Vesicle-associated membrane protein [Med 1.0 1.0 0.861 1e-115
356575504238 PREDICTED: vesicle-associated membrane p 1.0 1.0 0.878 1e-115
224110150238 predicted protein [Populus trichocarpa] 0.991 0.991 0.852 1e-114
255646155238 unknown [Glycine max] 1.0 1.0 0.869 1e-114
255549412237 Vesicle-associated membrane protein, put 0.995 1.0 0.886 1e-114
356536340238 PREDICTED: vesicle-associated membrane p 1.0 1.0 0.873 1e-113
449446291238 PREDICTED: vesicle-associated membrane p 1.0 1.0 0.836 1e-112
>gi|297820170|ref|XP_002877968.1| ATVAMP727 [Arabidopsis lyrata subsp. lyrata] gi|297323806|gb|EFH54227.1| ATVAMP727 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/238 (89%), Positives = 230/238 (96%)

Query: 1   MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLD 60
           M+QKGLIYSFV+KGTVVLAEHT YSGNFSTIA+QCLQKLP +SSKYTYSCDGHTFNFL+D
Sbjct: 1   MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVD 60

Query: 61  SGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFS 120
           +GFVFLVVADES GRSVPFVFLERVK+DFK+RY ASI+N+E HPLAD+DEDDDLF DRFS
Sbjct: 61  NGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFS 120

Query: 121 IAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIEL 180
           IAYNLDREFGP LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGE+IEL
Sbjct: 121 IAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIEL 180

Query: 181 LVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVWLVACGGFKC 238
           LVDKTENLQFQADSFQRQGRQLRR+MWLQ+LQMKLMV GAV++FI+IVW+VACGGFKC
Sbjct: 181 LVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVLSFILIVWVVACGGFKC 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15232475|ref|NP_190998.1| vesicle-associated membrane protein 727 [Arabidopsis thaliana] gi|145332835|ref|NP_001078283.1| vesicle-associated membrane protein 727 [Arabidopsis thaliana] gi|27805764|sp|Q9M376.1|VA727_ARATH RecName: Full=Vesicle-associated membrane protein 727; Short=AtVAMP727 gi|6822076|emb|CAB71004.1| synaptobrevin-like protein [Arabidopsis thaliana] gi|44681344|gb|AAS47612.1| At3g54300 [Arabidopsis thaliana] gi|45773850|gb|AAS76729.1| At3g54300 [Arabidopsis thaliana] gi|110738122|dbj|BAF00993.1| synaptobrevin -like protein [Arabidopsis thaliana] gi|332645689|gb|AEE79210.1| vesicle-associated membrane protein 727 [Arabidopsis thaliana] gi|332645690|gb|AEE79211.1| vesicle-associated membrane protein 727 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224097602|ref|XP_002311006.1| predicted protein [Populus trichocarpa] gi|222850826|gb|EEE88373.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358346334|ref|XP_003637224.1| Vesicle-associated membrane protein [Medicago truncatula] gi|355503159|gb|AES84362.1| Vesicle-associated membrane protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356575504|ref|XP_003555880.1| PREDICTED: vesicle-associated membrane protein 727-like [Glycine max] Back     alignment and taxonomy information
>gi|224110150|ref|XP_002315429.1| predicted protein [Populus trichocarpa] gi|118487155|gb|ABK95406.1| unknown [Populus trichocarpa] gi|222864469|gb|EEF01600.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255646155|gb|ACU23563.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255549412|ref|XP_002515759.1| Vesicle-associated membrane protein, putative [Ricinus communis] gi|223545087|gb|EEF46598.1| Vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356536340|ref|XP_003536697.1| PREDICTED: vesicle-associated membrane protein 727-like [Glycine max] Back     alignment and taxonomy information
>gi|449446291|ref|XP_004140905.1| PREDICTED: vesicle-associated membrane protein 727-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
TAIR|locus:2080340240 VAMP727 "AT3G54300" [Arabidops 1.0 0.991 0.815 2e-102
TAIR|locus:2046367285 VAMP725 "AT2G32670" [Arabidops 0.491 0.410 0.606 4.2e-71
TAIR|locus:2010627220 VAMP726 "AT1G04760" [Arabidops 0.491 0.531 0.589 1.2e-69
TAIR|locus:2010642219 VAMP721 "AT1G04750" [Arabidops 0.491 0.534 0.606 3.3e-69
TAIR|locus:2046595229 SAR1 "AT2G33120" [Arabidopsis 0.920 0.956 0.524 7.6e-64
TAIR|locus:2046490217 VAMP723 "AT2G33110" [Arabidops 0.394 0.433 0.553 9.9e-54
TAIR|locus:2147952221 VAMP713 "AT5G11150" [Arabidops 0.390 0.420 0.404 3.1e-35
TAIR|locus:2116672219 VAMP711 "vesicle-associated me 0.403 0.438 0.371 8.1e-35
TAIR|locus:2059591219 VAMP712 "vesicle-associated me 0.420 0.456 0.386 3e-33
TAIR|locus:2176342221 VAMP714 "AT5G22360" [Arabidops 0.474 0.511 0.324 1e-32
TAIR|locus:2080340 VAMP727 "AT3G54300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 194/238 (81%), Positives = 209/238 (87%)

Query:     1 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLD 60
             M+QKGLIYSFV+KGTVVLAEHT YSGNFSTIA+QCLQKLP +SSKYTYSCDGHTFNFL+D
Sbjct:     1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVD 60

Query:    61 SGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFS 120
             +GFVFLVVADES GRSVPFVFLERVK+DFK+RY ASI+N+E HPLA           RFS
Sbjct:    61 NGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFS 120

Query:   121 IAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIEL 180
             +AYNLDREFGP LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGE+IEL
Sbjct:   121 VAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIEL 180

Query:   181 LVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGFKC 238
             LVDKTENLQFQADSFQRQGRQLRR+MWLQ+LQMKLM            W+VACGGFKC
Sbjct:   181 LVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKC 238
GO:0003674 "molecular_function" evidence=ND
GO:0006810 "transport" evidence=IEA
GO:0016020 "membrane" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0005768 "endosome" evidence=IDA;TAS
GO:0006623 "protein targeting to vacuole" evidence=RCA;IMP
GO:0007033 "vacuole organization" evidence=RCA;IMP
GO:0031201 "SNARE complex" evidence=IPI
TAIR|locus:2046367 VAMP725 "AT2G32670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010627 VAMP726 "AT1G04760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010642 VAMP721 "AT1G04750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046595 SAR1 "AT2G33120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046490 VAMP723 "AT2G33110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147952 VAMP713 "AT5G11150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116672 VAMP711 "vesicle-associated membrane protein 711" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059591 VAMP712 "vesicle-associated membrane protein 712" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176342 VAMP714 "AT5G22360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M376VA727_ARATHNo assigned EC number0.88651.00.9916yesno
Q9JHW5VAMP7_RATNo assigned EC number0.31890.88650.9590yesno
P51809VAMP7_HUMANNo assigned EC number0.32320.88650.9590yesno
Q17QI5VAMP7_BOVINNo assigned EC number0.31890.88650.9590yesno
Q5ZL74VAMP7_CHICKNo assigned EC number0.31030.88650.9590yesno
Q86AQ7VAM7B_DICDINo assigned EC number0.33900.88650.8115yesno
Q5RF94VAMP7_PONABNo assigned EC number0.31890.88650.9590yesno
P70280VAMP7_MOUSENo assigned EC number0.32320.88650.9590yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
pfam0095789 pfam00957, Synaptobrevin, Synaptobrevin 2e-39
pfam1377482 pfam13774, Longin, Regulated-SNARE-like domain 1e-22
COG5143190 COG5143, SNC1, Synaptobrevin/VAMP-like protein [In 8e-12
COG5143190 COG5143, SNC1, Synaptobrevin/VAMP-like protein [In 4e-06
>gnl|CDD|201526 pfam00957, Synaptobrevin, Synaptobrevin Back     alignment and domain information 
 Score =  130 bits (330), Expect = 2e-39
 Identities = 45/89 (50%), Positives = 71/89 (79%)

Query: 146 EMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRR 205
              KL+K++AQ+ EVK IM +NI+KVL+RGE+++LLVDKTENLQ  A  F++Q R+L+R+
Sbjct: 1   SNDKLNKIQAQVDEVKDIMTENIDKVLERGEKLDLLVDKTENLQSSAQQFRKQARKLKRK 60

Query: 206 MWLQNLQMKLMVGGAVIAFIIIVWLVACG 234
           MW +N+++K+++G  V+  I+I+ +V CG
Sbjct: 61  MWWKNMKLKIILGLVVLILILIIIIVICG 89

Length = 89
>gnl|CDD|222370 pfam13774, Longin, Regulated-SNARE-like domain Back     alignment and domain information
>gnl|CDD|227472 COG5143, SNC1, Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227472 COG5143, SNC1, Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 238
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 100.0
KOG0862216 consensus Synaptobrevin/VAMP-like protein SEC22 [I 100.0
KOG0861198 consensus SNARE protein YKT6, synaptobrevin/VAMP s 99.96
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 99.95
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 99.94
COG5143190 SNC1 Synaptobrevin/VAMP-like protein [Intracellula 99.85
PF1377483 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3 99.69
COG5143190 SNC1 Synaptobrevin/VAMP-like protein [Intracellula 97.62
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 96.53
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 96.34
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 96.04
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 95.58
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 93.97
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 93.92
PF04086279 SRP-alpha_N: Signal recognition particle, alpha su 92.7
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 92.26
KOG0781 587 consensus Signal recognition particle receptor, al 91.65
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 91.56
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 91.06
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 85.71
PF06789159 UPF0258: Uncharacterised protein family (UPF0258); 85.65
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 85.13
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 81.92
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 80.99
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=7.4e-65  Score=409.87  Aligned_cols=214  Identities=59%  Similarity=1.044  Sum_probs=206.6

Q ss_pred             ccEEEEEEEcCCeEEEeecCCCCCHHHHHHHHHhcCCCC-CCceEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHH
Q 026426            4 KGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPAS-SSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFL   82 (238)
Q Consensus         4 ~~i~Ya~Iar~~~iLaey~~~~~~~~~~a~~il~k~~~~-~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL   82 (238)
                      |+|+|++||||++|||||++.+|||.++|.+||+|+|++ ++|.+|++|+|+|||+.+||++|+|++|++.++++||.||
T Consensus         1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL   80 (217)
T KOG0859|consen    1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL   80 (217)
T ss_pred             CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence            579999999999999999999999999999999999998 5699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccccchhHHHHhhhccCCchhhhHHHHHHHHHHHhHh
Q 026426           83 ERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKG  162 (238)
Q Consensus        83 ~~i~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~  162 (238)
                      ++|++.|.+.||....++..+++                    +.+|++.|++.|++|.++|+ .|++.+++.+++|+++
T Consensus        81 e~Ik~~F~k~YG~~a~ta~Aysm--------------------N~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~  139 (217)
T KOG0859|consen   81 ERIKEDFKKRYGGGAHTAVAYSM--------------------NKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKG  139 (217)
T ss_pred             HHHHHHHHHHhccchhHHHHhHh--------------------HHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHH
Confidence            99999999999887777666665                    99999999999999998888 6999999999999999


Q ss_pred             hhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026426          163 IMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAVIAFIIIVWLVACGGFKC  238 (238)
Q Consensus       163 im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k~~iii~~vv~~ii~iI~~~~c~gf~c  238 (238)
                      +|.+|||++++|||+||.|++||++|+.++..|++++++++|+|||+|.|+++++++++++++++||+.+||||+|
T Consensus       140 vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG~~~  215 (217)
T KOG0859|consen  140 VMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGGFTC  215 (217)
T ss_pred             HHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D Back     alignment and domain information
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
4b93_A189 Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri 6e-29
4afi_A173 Complex Between Vamp7 Longin Domain And Fragment Of 3e-12
2vx8_A169 Vamp7 Longin Domain Hrb Peptide Complex Length = 16 3e-12
2dmw_A131 Solution Structure Of The Longin Domain Of Synaptob 1e-11
3b5n_A61 Structure Of The Yeast Plasma Membrane Snare Comple 2e-09
2nps_A74 Crystal Structure Of The Early Endosomal Snare Comp 4e-09
3hd7_A91 Helical Extension Of The Neuronal Snare Complex Int 2e-07
2kog_A119 Lipid-Bound Synaptobrevin Solution Nmr Structure Le 5e-07
1sfc_A96 Neuronal Synaptic Fusion Complex Length = 96 2e-06
1l4a_A80 X-Ray Structure Of The Neuronal ComplexinSNARE COMP 4e-06
3kyq_A199 Lipid-Induced Conformational Switch Controls Fusion 6e-06
2nup_C196 Crystal Structure Of The Human Sec23a24A HETERODIME 1e-05
1kil_A66 Three-Dimensional Structure Of The ComplexinSNARE C 2e-05
1n7s_A63 High Resolution Structure Of A Truncated Neuronal S 9e-05
1gl2_A65 Crystal Structure Of An Endosomal Snare Core Comple 2e-04
>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 189 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 114/208 (54%), Gaps = 21/208 (10%)
Query: 5   GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFV 64
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     V
Sbjct: 3   AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 62
Query: 65  FLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYN 124
           +L + D+   RS  F FL  VK  F+  YG+  Q                     ++ Y 
Sbjct: 63  YLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQT--------------------ALPYA 102
Query: 125 LDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDK 184
           ++ EF   L   +++  S  + + K+ + +AQ+ E+KGIM+ NI+ V  RGER+ELL+DK
Sbjct: 103 MNSEFSSVLAAQLKH-HSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDK 161
Query: 185 TENLQFQADSFQRQGRQLRRRMWLQNLQ 212
           TENL   + +F+   R L R M ++N++
Sbjct: 162 TENLVDSSVTFKTTSRNLARAMCMKNIK 189
>pdb|4AFI|A Chain A, Complex Between Vamp7 Longin Domain And Fragment Of Delta- Adaptin From Ap3 Length = 173 Back     alignment and structure
>pdb|2VX8|A Chain A, Vamp7 Longin Domain Hrb Peptide Complex Length = 169 Back     alignment and structure
>pdb|2DMW|A Chain A, Solution Structure Of The Longin Domain Of Synaptobrevin- Like Protein 1 Length = 131 Back     alignment and structure
>pdb|3B5N|A Chain A, Structure Of The Yeast Plasma Membrane Snare Complex Length = 61 Back     alignment and structure
>pdb|2NPS|A Chain A, Crystal Structure Of The Early Endosomal Snare Complex Length = 74 Back     alignment and structure
>pdb|3HD7|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 91 Back     alignment and structure
>pdb|2KOG|A Chain A, Lipid-Bound Synaptobrevin Solution Nmr Structure Length = 119 Back     alignment and structure
>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex Length = 96 Back     alignment and structure
>pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 80 Back     alignment and structure
>pdb|3KYQ|A Chain A, Lipid-Induced Conformational Switch Controls Fusion Activity Of Longin Domain Snare Ykt6 Length = 199 Back     alignment and structure
>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 196 Back     alignment and structure
>pdb|1KIL|A Chain A, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 66 Back     alignment and structure
>pdb|1N7S|A Chain A, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 63 Back     alignment and structure
>pdb|1GL2|A Chain A, Crystal Structure Of An Endosomal Snare Core Complex Length = 65 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
4afi_A173 AP-3 complex subunit delta-1, vesicle-associated p 2e-39
2nut_C196 Vesicle-trafficking protein SEC22B; human copii SE 5e-39
2vx8_A169 Nucleoporin-like protein RIP, vesicle-associated m 3e-37
3kyq_A199 YKT6, synaptobrevin homolog YKT6; V-snare homolog, 1e-33
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 8e-30
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 2e-29
1l4a_A80 Synaptobrevin; snare, snare complex, membrane fusi 4e-28
2nps_A74 VAMP-4, vesicle-associated membrane protein 4; ves 7e-27
3b5n_A61 Synaptobrevin homolog 1; snare complex, syntaxin, 2e-26
1n7s_A63 Vesicle-associated membrane protein 2; neuronal sn 4e-26
1sfc_A96 VAMP 2, protein (synaptobrevin 2); membrane fusion 5e-25
1gl2_A65 Endobrevin; membrane protein, membrane fusion prot 3e-21
1urq_A63 M-tomosyn isoform; transport protein, tomosyn-snar 2e-05
2fh5_A185 Signal recognition particle receptor alpha subunit 6e-04
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Length = 173 Back     alignment and structure
 Score =  133 bits (335), Expect = 2e-39
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 20/143 (13%)

Query: 1   MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLD 60
                ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++  
Sbjct: 51  EEAMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQ 110

Query: 61  SGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFS 120
              V+L + D+   RS  F FL  VK  F+  YG+  Q                     +
Sbjct: 111 DRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQT--------------------A 150

Query: 121 IAYNLDREFGPRLKEHMQYCMSH 143
           + Y ++ EF   L   +++   +
Sbjct: 151 LPYAMNSEFSSVLAAQLKHHSEN 173
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Length = 196 Back     alignment and structure
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Length = 169 Back     alignment and structure
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Length = 199 Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Length = 119 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Length = 91 Back     alignment and structure
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 80 Back     alignment and structure
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus} Length = 74 Back     alignment and structure
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 61 Back     alignment and structure
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B Length = 63 Back     alignment and structure
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 96 Back     alignment and structure
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1 Length = 63 Back     alignment and structure
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1 Length = 185 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
4b93_A189 Vesicle-associated membrane protein 7; endocytosis 100.0
2nut_C196 Vesicle-trafficking protein SEC22B; human copii SE 100.0
3kyq_A199 YKT6, synaptobrevin homolog YKT6; V-snare homolog, 100.0
4afi_A173 AP-3 complex subunit delta-1, vesicle-associated p 99.97
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 99.96
2vx8_A169 Nucleoporin-like protein RIP, vesicle-associated m 99.95
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 99.94
2nps_A74 VAMP-4, vesicle-associated membrane protein 4; ves 99.88
3bw6_A144 Synaptobrevin homolog YKT6; YKT6P, farnesylation, 99.88
1sfc_A96 VAMP 2, protein (synaptobrevin 2); membrane fusion 99.87
1l4a_A80 Synaptobrevin; snare, snare complex, membrane fusi 99.86
1n7s_A63 Vesicle-associated membrane protein 2; neuronal sn 99.79
3b5n_A61 Synaptobrevin homolog 1; snare complex, syntaxin, 99.79
1gl2_A65 Endobrevin; membrane protein, membrane fusion prot 99.72
1urq_A63 M-tomosyn isoform; transport protein, tomosyn-snar 99.57
3fie_C38 Fragment of vesicle-associated membrane protein 2; 97.97
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 97.59
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.48
2fh5_A185 Signal recognition particle receptor alpha subunit 97.22
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 95.26
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 92.42
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 92.06
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 91.34
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 89.19
1w63_M 423 Adaptor-related protein complex 1, MU 1 subunit; e 87.32
2vgl_M 435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 87.2
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 86.61
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 82.79
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A Back     alignment and structure
Probab=100.00  E-value=2e-55  Score=364.18  Aligned_cols=189  Identities=34%  Similarity=0.608  Sum_probs=148.6

Q ss_pred             CccEEEEEEEcCCeEEEeecCCCCCHHHHHHHHHhcCCCCCCceEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHH
Q 026426            3 QKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFL   82 (238)
Q Consensus         3 ~~~i~Ya~Iar~~~iLaey~~~~~~~~~~a~~il~k~~~~~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL   82 (238)
                      .|+|+|||||||++|||||+..+|||..+|+++|+++|+.++|.+++.|+|.|||+.++|++|+||||++||+++||.||
T Consensus         1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL   80 (189)
T 4b93_A            1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL   80 (189)
T ss_dssp             CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred             CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence            37899999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccccchhHHHHhhhccCCchhhhHHHHHHHHHHHhHh
Q 026426           83 ERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKG  162 (238)
Q Consensus        83 ~~i~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~p~~~dkl~~i~~~v~~v~~  162 (238)
                      ++|+++|...|+..+.++.++++                    +.+|.+.|+++|++|+ ||.+.|++.+++++|+||++
T Consensus        81 ~~i~~eF~~~~~~~~~~~~~~~~--------------------~~~f~~~l~~~~~~y~-d~~~~d~l~~~~~~l~ev~~  139 (189)
T 4b93_A           81 NEVKKRFQTTYGSRAQTALPYAM--------------------NSEFSSVLAAQLKHHS-ENKSLDKVMETQAQVDELKG  139 (189)
T ss_dssp             HHHHHHHHHHHGGGGGTCCTTTT--------------------HHHHHHHHHHHHHHHH-CC-------CCHHHHHTTTT
T ss_pred             HHHHHHHHhhccccccccCCccc--------------------cchhhHHHHHHHHhhh-cccchhhHHHHHHHHHHHHH
Confidence            99999999999877766666554                    6889999999999994 67777999999999999999


Q ss_pred             hhhhhHHHHHHhhhHHHHhHHhhhhHHHHHHHHHHhHHHHHHHHHHHHhH
Q 026426          163 IMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQ  212 (238)
Q Consensus       163 im~~ni~~il~Rge~L~~L~~ks~~L~~~s~~f~~~a~~l~~~~ww~~~k  212 (238)
                      ||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||||+|
T Consensus       140 im~~Ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~mwwkn~K  189 (189)
T 4b93_A          140 IMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK  189 (189)
T ss_dssp             CCEECCCCBCTTSSBCCCCEETTCC-------------------------
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999987
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Back     alignment and structure
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Back     alignment and structure
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus} Back     alignment and structure
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A Back     alignment and structure
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B Back     alignment and structure
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum} Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 238
d1ifqa_127 d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId 3e-20
d1ioua_140 d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker 3e-08
d2fh5a1129 d.110.4.4 (A:1-129) Signal recognition particle re 0.001
>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]} Length = 127 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.0 bits (200), Expect = 3e-20
 Identities = 18/104 (17%), Positives = 46/104 (44%), Gaps = 10/104 (9%)

Query: 6   LIYSFVSKGT--VVLAEHTSYSGNFST-------IAIQCLQKLPASS-SKYTYSCDGHTF 55
           ++ + +++    + LA                   A Q  +KL   S ++ T      TF
Sbjct: 2   VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTF 61

Query: 56  NFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQN 99
           +++++ G  +LV+ + +  + + F +LE +  +F +++G  +  
Sbjct: 62  HYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPT 105
>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140 Back     information, alignment and structure
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 129 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
d1ifqa_127 Sec22b {Mouse (Mus musculus) [TaxId: 10090]} 99.9
d1ioua_140 Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch 99.7
d2fh5a1129 Signal recognition particle receptor alpha subunit 97.73
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 96.0
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 95.81
>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.5e-23  Score=159.17  Aligned_cols=116  Identities=17%  Similarity=0.422  Sum_probs=99.2

Q ss_pred             cEEEEEEEcC--CeEEEeecCCCCC-------HHHHHHHHHhcCCCC-CCceEEEECCeEEEEEeeCCEEEEEEecCCCC
Q 026426            5 GLIYSFVSKG--TVVLAEHTSYSGN-------FSTIAIQCLQKLPAS-SSKYTYSCDGHTFNFLLDSGFVFLVVADESVG   74 (238)
Q Consensus         5 ~i~Ya~Iar~--~~iLaey~~~~~~-------~~~~a~~il~k~~~~-~~k~s~~~~~~~~~~l~~~~~~~~~i~d~~~~   74 (238)
                      +|+|++|||+  +.||||+++.+++       +...|+.++++++|+ +.|.+++.|+|.|||+.++|++|+|+||++||
T Consensus         1 sil~t~IaR~~DgL~L~~s~~~~~~~~~~~~~~k~qak~ll~kl~~~~~~r~s~~~~~y~fHy~~~~gi~yl~i~d~~~~   80 (127)
T d1ifqa_           1 SVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP   80 (127)
T ss_dssp             CCCEEEEEETTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHTTCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred             CeEEEEEEEecCCcEEEEEeccccccchhHHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEEecCCeEEEEEEccccC
Confidence            4899999996  5899999866553       235788999999876 57999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccccchhHHHHhhhc
Q 026426           75 RSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYC  140 (238)
Q Consensus        75 ~~~af~fL~~i~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y  140 (238)
                      +++||.||++|+++|...|+..+.++. .|++                   +.+|+..|++.++.|
T Consensus        81 ~~laF~fLeei~~eF~~~y~~~i~~~~-rpy~-------------------Fi~Fd~~iqk~k~~y  126 (127)
T d1ifqa_          81 KKLAFAYLEDLHSEFDEQHGKKVPTVS-RPYS-------------------FIEFDTFIQKTKKLY  126 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTTTCC-STTT-------------------TGGGHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhhhhhhccc-CCcc-------------------hHHHHHHHHHHHHhc
Confidence            999999999999999999977655544 3332                   578999999988776
>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure