Citrus Sinensis ID: 026489

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MIPPLTPSTALSSRRSKNSIRRCSHTSIYLDGTPQGVMLKNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRRGGRTAFI
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHccccccccccccEEEEEcccccccccccHHHHHHHHHHccccEEEEEccccccccccccEEEEEEEEccccccccEEEEEccEEEEccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHccccEEEEEccccccccccccEEEEEEEEEEEccccEEEEEEEcEEEEEHHHHHEEHHHEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mippltpstalssrrsknsirrcshtsiyldgtpqgvmlknpictsIKLYLMdinespvyvllnpsinpaqkdlpvtiFESELHVIEGIPQLIFVRSSYTIETVEAerisvdhvahlkpsdggsaATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMqkgeipcenSLLRQVSSLLRrlpaiesekfQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTaydrhsrrggrtafi
Flexible Loop (DISEMBL)
mippltpstalssrrsknsirrcshtsiyldgtpqgvmLKNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNtaydrhsrrggrtafi
Low Complexity Region (SEG)
MIPPLTPSTALSSRRSKNSIRRCSHTSIYLDGTPQGVMLKNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENsllrqvssllrrlPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRRGGRTAFI
Disordered region (IsUnstruct)
**********************CSHTSIYLDGTPQGVMLKNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLK******AATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAY*************
Disordered Region (DISOPRED)
*********A**************HTSIYLDGTPQGVMLKNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDH**************************IKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDK******************
Disordered Region (DISEMBL)
*********************RCSHTSIYLDGTPQGVMLKNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR***********
Disordered Region (DISPRO)
*******************IRRCSHTSIYLDGTPQGVMLKNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIPPLTPSTALSSRRSKNSIRRCSHTSIYLDGTPQGVMLKNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRRGGRTAFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q8W1P0	317	COP9 signalosome complex	yes	no	0.789	0.593	0.845	1e-91
Q8W206	317	COP9 signalosome complex	no	no	0.789	0.593	0.845	2e-91
Q54C92	309	COP9 signalosome complex	yes	no	0.731	0.563	0.440	4e-40
Q7L5N1	327	COP9 signalosome complex	yes	no	0.731	0.532	0.423	2e-35
Q5REY0	328	COP9 signalosome complex	yes	no	0.731	0.530	0.423	2e-35
A7TX81	323	COP9 signalosome complex	yes	no	0.731	0.538	0.423	2e-35
A6QQ21	324	COP9 signalosome complex	yes	no	0.731	0.537	0.423	2e-35
O88545	324	COP9 signalosome complex	yes	no	0.731	0.537	0.423	2e-35
Q6NUC2	318	COP9 signalosome complex	N/A	no	0.731	0.547	0.418	5e-35
Q07G98	319	COP9 signalosome complex	yes	no	0.731	0.545	0.418	1e-34

>sp|Q8W1P0|CSN6B_ARATH COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana GN=CSN6B PE=1 SV=2

 Score =  335 bits (860), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 159/188 (84%), Positives = 175/188 (93%)

Query: 51  LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
           LMDINESPVYVLLNP+IN AQKDLPVTI+ESE HVI+GIPQ IFV +SYTIETVEAERIS
Sbjct: 130 LMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIFVHTSYTIETVEAERIS 189

Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
           VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL+ ++VAMQKG+ PCENS+LR
Sbjct: 190 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHIVAMQKGDKPCENSVLR 249

Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
           QVSSLLR LPA ESEKF ++FLMEYND LL++YLAM TNC S MNE+VDKFNTAYD+HSR
Sbjct: 250 QVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKFNTAYDKHSR 309

Query: 231 RGGRTAFI 238
           RGGRTAF+
Sbjct: 310 RGGRTAFM 317

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of PSIAA6 by regulating the activity of the Ubl ligase SCF-TIR complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8W206|CSN6A_ARATH COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana GN=CSN6A PE=1 SV=2

 Score =  335 bits (859), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/188 (84%), Positives = 175/188 (93%)

Query: 51  LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
           LMDINESPVYVLLNP+IN  QKDLPVTI+ESELHVI+GIPQLIF  +SYTIETVEAERIS
Sbjct: 130 LMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSYTIETVEAERIS 189

Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
           VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL+  L AMQKG+  C+NS+LR
Sbjct: 190 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGDKSCDNSVLR 249

Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
           QVSSLLRRLPA+ESE+FQD+FLMEYND LLI YLAM TNC+S MNE+VDKFNTAYDR++R
Sbjct: 250 QVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRNTR 309

Query: 231 RGGRTAFI 238
           RGGRTAF+
Sbjct: 310 RGGRTAFM 317

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of PSIAA6 by regulating the activity of the Ubl ligase SCF-TIR complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54C92|CSN6_DICDI COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum GN=csn6 PE=1 SV=1

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/177 (44%), Positives = 122/177 (68%), Gaps = 3/177 (1%)

Query: 55  NESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHV 114
           NESP+Y++L+   +P  KDLPV I+ESELH++   P  IFV++ Y I+T EAERI V+H+
Sbjct: 132 NESPLYLMLDTD-SPKSKDLPVIIYESELHIVNDEPTTIFVKTPYKIQTGEAERIGVNHI 190

Query: 115 AHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSS 174
           A + PS  GS  + L +HL  +H+AI MLN R++ L  YL A+++  +P E ++LR+ SS
Sbjct: 191 AKVTPS--GSEGSGLTSHLFTMHNAISMLNIRVKALSDYLQAVKEKRLPYEQNILRKASS 248

Query: 175 LLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRR 231
           L  +LP I++  F+  +L EYND LL+ YLA  T  ++++N+ +DK+  + ++ S+R
Sbjct: 249 LCNQLPTIDTHDFKKSYLQEYNDVLLVTYLASITKTSASLNDTIDKYLVSNEKQSKR 305

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity.

Dictyostelium discoideum (taxid: 44689)

>sp|Q7L5N1|CSN6_HUMAN COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 53  DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
           +I ESP+++ LNP       DLPV++FES + +I G   ++F   +YT+ T EAERI VD
Sbjct: 144 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 201

Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
           HVA +  +  G  +T +A HL   HSAIKML+SR++++  Y+ A + GE+P  + +LR+ 
Sbjct: 202 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 260

Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
            +L   LP + ++KF+ DF  + ND  L+AYL   T   +TMN+ V+KFN  YDR  
Sbjct: 261 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQG 317

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Has some glucocorticoid receptor-responsive activity.

Homo sapiens (taxid: 9606)

>sp|Q5REY0|CSN6_PONAB COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 53  DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
           +I ESP+++ LNP       DLPV++FES + +I G   ++F   +YT+ T EAERI VD
Sbjct: 145 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 202

Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
           HVA +  +  G  +T +A HL   HSAIKML+SR++++  Y+ A + GE+P  + +LR+ 
Sbjct: 203 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 261

Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
            +L   LP + ++KF+ DF  + ND  L+AYL   T   +TMN+ V+KFN  YDR  
Sbjct: 262 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQG 318

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Has some glucocorticoid receptor-responsive activity.

Pongo abelii (taxid: 9601)

>sp|A7TX81|CSN6_PIG COP9 signalosome complex subunit 6 OS=Sus scrofa GN=COPS6 PE=2 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 53  DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
           +I ESP+++ LNP       DLPV++FES + +I G   ++F   +YT+ T EAERI VD
Sbjct: 140 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 197

Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
           HVA +  +  G  +T +A HL   HSAIKML+SR++++  Y+ A + GE+P  + +LR+ 
Sbjct: 198 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 256

Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
            +L   LP + ++KF+ DF  + ND  L+AYL   T   +TMN+ V+KFN  YDR  
Sbjct: 257 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQG 313

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Has some glucocorticoid receptor-responsive activity.

Sus scrofa (taxid: 9823)

>sp|A6QQ21|CSN6_BOVIN COP9 signalosome complex subunit 6 OS=Bos taurus GN=COPS6 PE=2 SV=1

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 53  DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
           +I ESP+++ LNP       DLPV++FES + +I G   ++F   +YT+ T EAERI VD
Sbjct: 141 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 198

Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
           HVA +  +  G  +T +A HL   HSAIKML+SR++++  Y+ A + GE+P  + +LR+ 
Sbjct: 199 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 257

Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
            +L   LP + ++KF+ DF  + ND  L+AYL   T   +TMN+ V+KFN  YDR  
Sbjct: 258 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQG 314

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Has some glucocorticoid receptor-responsive activity.

Bos taurus (taxid: 9913)

>sp|O88545|CSN6_MOUSE COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1 SV=1

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 53  DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
           +I ESP+++ LNP       DLPV++FES + +I G   ++F   +YT+ T EAERI VD
Sbjct: 141 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 198

Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
           HVA +  +  G  +T +A HL   HSAIKML+SR++++  Y+ A + GE+P  + +LR+ 
Sbjct: 199 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 257

Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
            +L   LP + ++KF+ DF  + ND  L+AYL   T   +TMN+ V+KFN  YDR  
Sbjct: 258 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQG 314

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Has some glucocorticoid receptor-responsive activity.

Mus musculus (taxid: 10090)

>sp|Q6NUC2|CSN6_XENLA COP9 signalosome complex subunit 6 OS=Xenopus laevis GN=cops6 PE=2 SV=1

 Score =  147 bits (372), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 53  DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
           +I ESP+++ LNP       DLPV+++ES + ++ G   ++    SYT+ T EAERI VD
Sbjct: 135 EIIESPLFLKLNPMTK--HTDLPVSVYESVIDIVNGEATMLLAELSYTLATEEAERIGVD 192

Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
           HVA +  +  G  +T +A HL   HSAIKML+SR+R++  Y+ A + GE+P  + +LR+ 
Sbjct: 193 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVRLILEYVRAAEGGEVPFNHEILREA 251

Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
           S+L   LP + ++KF+ DF  + ND  L++YL   T   +TMN+ V+KFN  YDR  
Sbjct: 252 SALCHCLPVLSTDKFKTDFYDQCNDVGLMSYLGTITKTCNTMNQFVNKFNILYDRQG 308

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity.

Xenopus laevis (taxid: 8355)

>sp|Q07G98|CSN6_XENTR COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6 PE=2 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 53  DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
           +I ESP+++ LNP       DLPV+++ES + ++ G   ++    SYT+ T EAERI VD
Sbjct: 136 EIIESPLFLKLNPMTK--HTDLPVSVYESVIDIVNGEATMLLAELSYTLATEEAERIGVD 193

Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
           HVA +  +  G  +T +A HL   HSAIKML+SR+R++  Y+ A + GE+P  + +LR+ 
Sbjct: 194 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVRLILEYVRAAEAGEVPFNHEILREA 252

Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
           S+L   LP + ++KF+ DF  + ND  L++YL   T   +TMN+ V+KFN  YDR  
Sbjct: 253 SALCHCLPVLSTDKFKMDFYDQCNDVGLMSYLGTITKTCNTMNQFVNKFNILYDRQG 309

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
118486839	194	unknown [Populus trichocarpa]	0.789	0.969	0.978	1e-103
224122056	306	predicted protein [Populus trichocarpa]	0.789	0.614	0.978	1e-103
255576641	318	signalosome subunit, putative [Ricinus c	0.789	0.591	0.968	1e-103
225463552	317	PREDICTED: COP9 signalosome complex subu	0.789	0.593	0.946	1e-101
356508182	318	PREDICTED: COP9 signalosome complex subu	0.789	0.591	0.914	1e-97
388496238	317	unknown [Lotus japonicus]	0.789	0.593	0.909	1e-96
356517784	322	PREDICTED: COP9 signalosome complex subu	0.789	0.583	0.904	1e-96
388516353	318	unknown [Medicago truncatula]	0.789	0.591	0.888	3e-95
294462977	299	unknown [Picea sitchensis]	0.789	0.628	0.872	7e-94
449443994	326	PREDICTED: COP9 signalosome complex subu	0.789	0.576	0.888	2e-93

>gi|118486839|gb|ABK95254.1| unknown [Populus trichocarpa]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/188 (97%), Positives = 187/188 (99%)

Query: 51  LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
           LMDINESPVYVLLNPSINPAQKDLPVTI+ESELHVI+GIPQLIFV SSYTIETVEAERIS
Sbjct: 7   LMDINESPVYVLLNPSINPAQKDLPVTIYESELHVIDGIPQLIFVCSSYTIETVEAERIS 66

Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
           VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR
Sbjct: 67  VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 126

Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
           QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNC+STMNELVDKFNTAYDRHSR
Sbjct: 127 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCSSTMNELVDKFNTAYDRHSR 186

Query: 231 RGGRTAFI 238
           RGGRTAFI
Sbjct: 187 RGGRTAFI 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122056|ref|XP_002330530.1| predicted protein [Populus trichocarpa] gi|222872088|gb|EEF09219.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/188 (97%), Positives = 187/188 (99%)

Query: 51  LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
           LMDINESPVYVLLNPSINPAQKDLPVTI+ESELHVI+GIPQLIFV SSYTIETVEAERIS
Sbjct: 119 LMDINESPVYVLLNPSINPAQKDLPVTIYESELHVIDGIPQLIFVCSSYTIETVEAERIS 178

Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
           VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR
Sbjct: 179 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 238

Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
           QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNC+STMNELVDKFNTAYDRHSR
Sbjct: 239 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCSSTMNELVDKFNTAYDRHSR 298

Query: 231 RGGRTAFI 238
           RGGRTAFI
Sbjct: 299 RGGRTAFI 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576641|ref|XP_002529210.1| signalosome subunit, putative [Ricinus communis] gi|223531328|gb|EEF33166.1| signalosome subunit, putative [Ricinus communis]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/188 (96%), Positives = 185/188 (98%)

Query: 51  LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
           LMDINESPVYVLLNPSINPAQKDLPV I+ESELHVI+GIPQLIFVRSSYTIETVEAERIS
Sbjct: 131 LMDINESPVYVLLNPSINPAQKDLPVIIYESELHVIDGIPQLIFVRSSYTIETVEAERIS 190

Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
           VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYL AMQKGEIPCENSLLR
Sbjct: 191 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLAAMQKGEIPCENSLLR 250

Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
           QVSSLLRRLPAIESEKFQDDFLMEYNDTLLI YLAMFTNC+STMNELVDKFNTAYDRHSR
Sbjct: 251 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLITYLAMFTNCSSTMNELVDKFNTAYDRHSR 310

Query: 231 RGGRTAFI 238
           RGGRTAFI
Sbjct: 311 RGGRTAFI 318

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463552|ref|XP_002267156.1| PREDICTED: COP9 signalosome complex subunit 6a [Vitis vinifera] gi|296090054|emb|CBI39873.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/188 (94%), Positives = 186/188 (98%)

Query: 51  LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
           LMDINESPVYVLLNPSIN AQKDLPVTI+ESELHVI+GIPQLIFVR++YTIETVEAERIS
Sbjct: 130 LMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIDGIPQLIFVRANYTIETVEAERIS 189

Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
           VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYL+AMQKG+IPCENSLLR
Sbjct: 190 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLLAMQKGDIPCENSLLR 249

Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
           QVSSLLRRLPAIES KFQDDFLMEYNDTLLI+YLAMFTNC+STMNELVDKFNTAYDRHSR
Sbjct: 250 QVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMFTNCSSTMNELVDKFNTAYDRHSR 309

Query: 231 RGGRTAFI 238
           RGGRTAFI
Sbjct: 310 RGGRTAFI 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508182|ref|XP_003522838.1| PREDICTED: COP9 signalosome complex subunit 6a-like [Glycine max]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 172/188 (91%), Positives = 183/188 (97%)

Query: 51  LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
           LMDINESPVYVLLNPSIN +QKDLPV+IFESELHVI+GIPQLIFVRSSYTIETVEAERIS
Sbjct: 131 LMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERIS 190

Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
           VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKML+SRI+VLHHYL+AMQKG++PCENSLLR
Sbjct: 191 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLR 250

Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
           QVSSLLRRLPAIES KFQDDFLMEYNDTLLI+YLAM TNC+S MNELVDKFN AYDRHSR
Sbjct: 251 QVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNELVDKFNIAYDRHSR 310

Query: 231 RGGRTAFI 238
           RGGRTAF+
Sbjct: 311 RGGRTAFM 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496238|gb|AFK36185.1| unknown [Lotus japonicus]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 171/188 (90%), Positives = 182/188 (96%)

Query: 51  LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
           LMDINESPVYVLLNPSIN +QKDLPV+IFESELHVI+GIPQLIFVRSSYTIETVEAERIS
Sbjct: 130 LMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERIS 189

Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
           VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKML+SRI+VLHHYL+AMQKG++PCENSLLR
Sbjct: 190 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLR 249

Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
           QVSSLLRRLPAIES KFQDDFLM YNDTLLI+YL M TNC+S MNELVDKFNTAYDRHSR
Sbjct: 250 QVSSLLRRLPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNELVDKFNTAYDRHSR 309

Query: 231 RGGRTAFI 238
           RGGRTAF+
Sbjct: 310 RGGRTAFM 317

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517784|ref|XP_003527566.1| PREDICTED: COP9 signalosome complex subunit 6a-like [Glycine max]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 170/188 (90%), Positives = 183/188 (97%)

Query: 51  LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
           LMDINESPVYVLLNPSIN +QKDLPV+IFESELHVI+GIPQLIFVRSSYTIETVEAERIS
Sbjct: 135 LMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERIS 194

Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
           VDHVAHLKPSDGGSAATQLAAHLTG HSAIKML+SRI+VLHHYL+AMQKG++PCENSLLR
Sbjct: 195 VDHVAHLKPSDGGSAATQLAAHLTGTHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLR 254

Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
           QVSSLLRRLPAIES KFQDDFLMEYNDT+LI+YLAM TNC+S+MNELVDKFN AYDRHSR
Sbjct: 255 QVSSLLRRLPAIESGKFQDDFLMEYNDTVLISYLAMLTNCSSSMNELVDKFNIAYDRHSR 314

Query: 231 RGGRTAFI 238
           RGGRTAF+
Sbjct: 315 RGGRTAFM 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516353|gb|AFK46238.1| unknown [Medicago truncatula]

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 167/188 (88%), Positives = 184/188 (97%)

Query: 51  LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
           LMDINESPVYVLLNP+IN +QKDLPV+IFESELHVI+GIPQLIFVRSSYTIETVEAERIS
Sbjct: 131 LMDINESPVYVLLNPAINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERIS 190

Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
           VDHVAHLKPSDGGSAATQLAA+LTGIHSAIKML+SRI+VLHHYL+AM+KG++PCENSLLR
Sbjct: 191 VDHVAHLKPSDGGSAATQLAANLTGIHSAIKMLHSRIKVLHHYLLAMEKGDVPCENSLLR 250

Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
           QVSSLLRRLPAIES KFQDDFLMEYNDTLLI+YLAM TNC+S MN+LVDKF+TAYDRH+R
Sbjct: 251 QVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHTR 310

Query: 231 RGGRTAFI 238
           RGGRTAF+
Sbjct: 311 RGGRTAFM 318

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294462977|gb|ADE77027.1| unknown [Picea sitchensis]

 Score =  349 bits (895), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 164/188 (87%), Positives = 180/188 (95%)

Query: 51  LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
           LMDINESPVYVLLNP+IN AQKDLP+TI+ESELH+IEG+P LIFV+S+YTIETVEAERIS
Sbjct: 112 LMDINESPVYVLLNPAINHAQKDLPITIYESELHIIEGVPSLIFVKSNYTIETVEAERIS 171

Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
           VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL+H+L AMQ+GEIP ENSLLR
Sbjct: 172 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYHFLSAMQRGEIPYENSLLR 231

Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
           QVSSLLRRLPAIES KFQDDFLMEYNDTLL+AYLAM TNC+STMNEL+DKFNTA+D+ SR
Sbjct: 232 QVSSLLRRLPAIESPKFQDDFLMEYNDTLLMAYLAMITNCSSTMNELIDKFNTAFDKQSR 291

Query: 231 RGGRTAFI 238
           RGGRT F+
Sbjct: 292 RGGRTTFL 299

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443994|ref|XP_004139760.1| PREDICTED: COP9 signalosome complex subunit 6a-like [Cucumis sativus] gi|449482625|ref|XP_004156353.1| PREDICTED: COP9 signalosome complex subunit 6a-like [Cucumis sativus]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/188 (88%), Positives = 176/188 (93%)

Query: 51  LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
           LMDINESPVYVLLNPSIN AQKDLPVTI+ESELHVIEGIPQLIFVRSSYTIETVEAERIS
Sbjct: 139 LMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIFVRSSYTIETVEAERIS 198

Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
           VDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSRIR+LH YL+AMQ G+IP ENSLLR
Sbjct: 199 VDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYLLAMQNGDIPLENSLLR 258

Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
           QVSSL+RRLP  ES KFQDDFLMEYNDT+LI YLAM TNC+S MNEL++KFNTAYDRHSR
Sbjct: 259 QVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSSVMNELIEKFNTAYDRHSR 318

Query: 231 RGGRTAFI 238
           RGGRT FI
Sbjct: 319 RGGRTVFI 326

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2131493	317	CSN6B "AT4G26430" [Arabidopsis	0.789	0.593	0.787	6.3e-76
TAIR|locus:2177601	317	CSN6A "AT5G56280" [Arabidopsis	0.789	0.593	0.781	9.3e-75
DICTYBASE|DDB_G0293180	309	csn6 "Mov34/MPN/PAD-1 family p	0.731	0.563	0.406	4.6e-34
UNIPROTKB|A6QQ21	324	COPS6 "COP9 signalosome comple	0.722	0.530	0.405	2e-31
UNIPROTKB|F1MG10	324	COPS6 "COP9 signalosome comple	0.722	0.530	0.405	2e-31
UNIPROTKB|E7EM64	326	COPS6 "COP9 signalosome comple	0.722	0.527	0.405	2e-31
UNIPROTKB|Q7L5N1	327	COPS6 "COP9 signalosome comple	0.722	0.525	0.405	2e-31
UNIPROTKB|A7TX81	323	COPS6 "COP9 signalosome comple	0.722	0.532	0.405	2e-31
MGI|MGI:1349439	324	Cops6 "COP9 (constitutive phot	0.722	0.530	0.405	2e-31
RGD|1309919	344	Cops6 "COP9 signalosome subuni	0.722	0.5	0.405	2e-31

TAIR|locus:2131493 CSN6B "AT4G26430" [Arabidopsis thaliana (taxid:3702)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 148/188 (78%), Positives = 163/188 (86%)

Query:    51 LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
             LMDINESPVYVLLNP+IN AQKDLPVTI+ESE HVI+GIPQ IFV +SYTIETVEAERIS
Sbjct:   130 LMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIFVHTSYTIETVEAERIS 189

Query:   111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXX 170
             VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL+ ++VAMQKG+ PCEN    
Sbjct:   190 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHIVAMQKGDKPCENSVLR 249

Query:   171 XXXXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
                      PA ESEKF ++FLMEYND LL++YLAM TNC S MNE+VDKFNTAYD+HSR
Sbjct:   250 QVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKFNTAYDKHSR 309

Query:   231 RGGRTAFI 238
             RGGRTAF+
Sbjct:   310 RGGRTAFM 317

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0010387 "signalosome assembly" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0000338 "protein deneddylation" evidence=TAS

GO:0008180 "signalosome" evidence=IPI

TAIR|locus:2177601 CSN6A "AT5G56280" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 147/188 (78%), Positives = 162/188 (86%)

Query:    51 LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
             LMDINESPVYVLLNP+IN  QKDLPVTI+ESELHVI+GIPQLIF  +SYTIETVEAERIS
Sbjct:   130 LMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSYTIETVEAERIS 189

Query:   111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXX 170
             VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL+  L AMQKG+  C+N    
Sbjct:   190 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGDKSCDNSVLR 249

Query:   171 XXXXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
                      PA+ESE+FQD+FLMEYND LLI YLAM TNC+S MNE+VDKFNTAYDR++R
Sbjct:   250 QVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRNTR 309

Query:   231 RGGRTAFI 238
             RGGRTAF+
Sbjct:   310 RGGRTAFM 317

GO:0005634 "nucleus" evidence=TAS

GO:0030163 "protein catabolic process" evidence=TAS

GO:0008180 "signalosome" evidence=TAS;IPI

GO:0009640 "photomorphogenesis" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0010387 "signalosome assembly" evidence=IMP

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

DICTYBASE|DDB_G0293180 csn6 "Mov34/MPN/PAD-1 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 72/177 (40%), Positives = 112/177 (63%)

Query:    55 NESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHV 114
             NESP+Y++L+   +P  KDLPV I+ESELH++   P  IFV++ Y I+T EAERI V+H+
Sbjct:   132 NESPLYLMLDTD-SPKSKDLPVIIYESELHIVNDEPTTIFVKTPYKIQTGEAERIGVNHI 190

Query:   115 AHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXXXX 174
             A + PS  GS  + L +HL  +H+AI MLN R++ L  YL A+++  +P E         
Sbjct:   191 AKVTPS--GSEGSGLTSHLFTMHNAISMLNIRVKALSDYLQAVKEKRLPYEQNILRKASS 248

Query:   175 XXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRR 231
                  P I++  F+  +L EYND LL+ YLA  T  ++++N+ +DK+  + ++ S+R
Sbjct:   249 LCNQLPTIDTHDFKKSYLQEYNDVLLVTYLASITKTSASLNDTIDKYLVSNEKQSKR 305

GO:0045335 "phagocytic vesicle" evidence=IEA;IDA

GO:0008180 "signalosome" evidence=IEA;ISS;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|A6QQ21 COPS6 "COP9 signalosome complex subunit 6" [Bos taurus (taxid:9913)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 71/175 (40%), Positives = 105/175 (60%)

Query:    53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
             +I ESP+++ LNP       DLPV++FES + +I G   ++F   +YT+ T EAERI VD
Sbjct:   141 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 198

Query:   113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
             HVA +  +  G  +T +A HL   HSAIKML+SR++++  Y+ A + GE+P  +      
Sbjct:   199 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 257

Query:   173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
                    P + ++KF+ DF  + ND  L+AYL   T   +TMN+ V+KFN  YDR
Sbjct:   258 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 312

GO:0005737 "cytoplasm" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

UNIPROTKB|F1MG10 COPS6 "COP9 signalosome complex subunit 6" [Bos taurus (taxid:9913)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 71/175 (40%), Positives = 105/175 (60%)

Query:    53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
             +I ESP+++ LNP       DLPV++FES + +I G   ++F   +YT+ T EAERI VD
Sbjct:   141 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 198

Query:   113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
             HVA +  +  G  +T +A HL   HSAIKML+SR++++  Y+ A + GE+P  +      
Sbjct:   199 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 257

Query:   173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
                    P + ++KF+ DF  + ND  L+AYL   T   +TMN+ V+KFN  YDR
Sbjct:   258 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 312

GO:0010388 "cullin deneddylation" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

UNIPROTKB|E7EM64 COPS6 "COP9 signalosome complex subunit 6" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 71/175 (40%), Positives = 105/175 (60%)

Query:    53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
             +I ESP+++ LNP       DLPV++FES + +I G   ++F   +YT+ T EAERI VD
Sbjct:   143 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 200

Query:   113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
             HVA +  +  G  +T +A HL   HSAIKML+SR++++  Y+ A + GE+P  +      
Sbjct:   201 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 259

Query:   173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
                    P + ++KF+ DF  + ND  L+AYL   T   +TMN+ V+KFN  YDR
Sbjct:   260 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 314

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q7L5N1 COPS6 "COP9 signalosome complex subunit 6" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 71/175 (40%), Positives = 105/175 (60%)

Query:    53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
             +I ESP+++ LNP       DLPV++FES + +I G   ++F   +YT+ T EAERI VD
Sbjct:   144 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 201

Query:   113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
             HVA +  +  G  +T +A HL   HSAIKML+SR++++  Y+ A + GE+P  +      
Sbjct:   202 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 260

Query:   173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
                    P + ++KF+ DF  + ND  L+AYL   T   +TMN+ V+KFN  YDR
Sbjct:   261 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 315

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008180 "signalosome" evidence=IDA

GO:0010388 "cullin deneddylation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|A7TX81 COPS6 "COP9 signalosome complex subunit 6" [Sus scrofa (taxid:9823)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 71/175 (40%), Positives = 105/175 (60%)

Query:    53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
             +I ESP+++ LNP       DLPV++FES + +I G   ++F   +YT+ T EAERI VD
Sbjct:   140 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 197

Query:   113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
             HVA +  +  G  +T +A HL   HSAIKML+SR++++  Y+ A + GE+P  +      
Sbjct:   198 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 256

Query:   173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
                    P + ++KF+ DF  + ND  L+AYL   T   +TMN+ V+KFN  YDR
Sbjct:   257 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 311

GO:0005737 "cytoplasm" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

MGI|MGI:1349439 Cops6 "COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana)" [Mus musculus (taxid:10090)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 71/175 (40%), Positives = 105/175 (60%)

Query:    53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
             +I ESP+++ LNP       DLPV++FES + +I G   ++F   +YT+ T EAERI VD
Sbjct:   141 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 198

Query:   113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
             HVA +  +  G  +T +A HL   HSAIKML+SR++++  Y+ A + GE+P  +      
Sbjct:   199 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 257

Query:   173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
                    P + ++KF+ DF  + ND  L+AYL   T   +TMN+ V+KFN  YDR
Sbjct:   258 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 312

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008180 "signalosome" evidence=ISO;IDA

GO:0010388 "cullin deneddylation" evidence=ISO

RGD|1309919 Cops6 "COP9 signalosome subunit 6" [Rattus norvegicus (taxid:10116)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 71/175 (40%), Positives = 105/175 (60%)

Query:    53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
             +I ESP+++ LNP       DLPV++FES + +I G   ++F   +YT+ T EAERI VD
Sbjct:   161 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 218

Query:   113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
             HVA +  +  G  +T +A HL   HSAIKML+SR++++  Y+ A + GE+P  +      
Sbjct:   219 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 277

Query:   173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
                    P + ++KF+ DF  + ND  L+AYL   T   +TMN+ V+KFN  YDR
Sbjct:   278 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 332

GO:0005634 "nucleus" evidence=ISO

GO:0008180 "signalosome" evidence=IEA;ISO

GO:0010388 "cullin deneddylation" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W1P0	CSN6B_ARATH	No assigned EC number	0.8457	0.7899	0.5930	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01400002	SubName- Full=Putative uncharacterized protein; (306 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0012044601	SubName- Full=Putative uncharacterized protein; (398 aa)				•	•		•		0.804
	estExt_Genewise1_v1.C_LG_XVIII2221	hypothetical protein (366 aa)				•	•		•		0.543
	estExt_fgenesh4_pg.C_1470039	hypothetical protein (366 aa)				•	•		•		0.540
	fgenesh4_pm.C_LG_II000624	hypothetical protein (225 aa)					•		•		0.464
	gw1.40.305.1	SubName- Full=Putative uncharacterized protein; (223 aa)					•		•		0.459

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
cd08063	288	cd08063, MPN_CSN6, Mpr1p, Pad1p N-terminal (MPN) d	2e-83
pfam13012	115	pfam13012, MitMem_reg, Maintenance of mitochondria	9e-30
cd08062	280	cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN)	5e-13
PLN03246	303	PLN03246, PLN03246, 26S proteasome regulatory subu	6e-09
cd08064	265	cd08064, MPN_eIF3f, Mpr1p, Pad1p N-terminal (MPN)	4e-08

>gnl|CDD|163694 cd08063, MPN_CSN6, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6

 Score =  250 bits (640), Expect = 2e-83
 Identities = 97/184 (52%), Positives = 128/184 (69%), Gaps = 2/184 (1%)

Query: 51  LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
           +++INESPV +LL+P  N + KDLPVTI+ES L +++G   L F    YTIET EAERI 
Sbjct: 107 ILEINESPVLLLLDPEANASGKDLPVTIYESVLELVDGEATLRFRELPYTIETGEAERIG 166

Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
           VDHVA    S G S  + +AAHL   H+AIKMLNSR+ ++  YL A+  GE+P ++S+LR
Sbjct: 167 VDHVARGGAS-GSSEKSTVAAHLQAQHNAIKMLNSRVELILEYLKAVPVGEVPPDHSILR 225

Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
            +S+L  RLP ++SE F+++ L EYND LL+AYLA  T   +T+NELVDKFN  YDR   
Sbjct: 226 SISALCSRLPVLKSEAFREELLAEYNDVLLVAYLATLTKGCNTLNELVDKFNVVYDR-KG 284

Query: 231 RGGR 234
            G R
Sbjct: 285 SGRR 288

CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleavage of Rbx1 and increased deneddylation of cullins inactivate CRLs and presumably stabilize pro-apoptotic factors for final apoptotic steps. While CSN6 shows a typical MPN metalloprotease fold, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. Length = 288

>gnl|CDD|205193 pfam13012, MitMem_reg, Maintenance of mitochondrial structure and function

 Score =  106 bits (268), Expect = 9e-30
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 105 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC 164
           EAE+I V+H+            + L+  L     A+K L+ R+  +  YL  +  G++P 
Sbjct: 2   EAEQIGVEHLLR---GLNRHYYSTLSRKLELEQKALKNLHKRLWTIGLYLEDVIDGKLPP 58

Query: 165 ENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKF 221
            + +LR++ SLL  LP  ++++F+++F +E ND LL+ YL         ++EL++  
Sbjct: 59  NHEILRKLQSLLNLLPNYDNKEFEEEFNVETNDQLLVVYLGKLDRKQHALHELINNN 115

This is C-terminal to the Mov24 region of the yeast proteasomal subunit Rpn11 and seems likely to regulate the mitochondrial fission and tubulation processes, ie the outer mitochondrial membrane proteins. This function appears to be unrelated to the proteasome activity of the N-terminal region. Length = 115

>gnl|CDD|163693 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 16/163 (9%)

Query: 53  DINE-------SPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSSYTIET 103
           DINE       +PV V+++  + P    LP   + +  E+H         FV     I  
Sbjct: 100 DINELFRRYCPNPVLVIID--VRPKDLGLPTEAYIAVEEVHDDGTPTSKTFVHVPSEIGA 157

Query: 104 VEAERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEI 162
            EAE + V+H+   +K     + +T++   L  +    K L S+++ +  YL  + +G++
Sbjct: 158 EEAEEVGVEHLLRDIKDVTVSTLSTRVTNKLNSL----KGLQSKLKEIKDYLQLVVEGKL 213

Query: 163 PCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLA 205
           P  + ++  +  +   LP +   +    F ++ ND +L+ YL+
Sbjct: 214 PINHQIIYNLQDIFNLLPNLNLPELVKAFAVKTNDQMLVIYLS 256

This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural. Length = 280

>gnl|CDD|215645 PLN03246, PLN03246, 26S proteasome regulatory subunit; Provisional

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 45/179 (25%), Positives = 88/179 (49%), Gaps = 17/179 (9%)

Query: 52  MDINE-------SPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQL---IFVRSSYTI 101
           +DI+E       +PV V+++  + P +  +P   + +   V E   Q    +FV     I
Sbjct: 104 LDIHELFNDYVPNPVLVIID--VQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEI 161

Query: 102 ETVEAERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKG 160
              EAE I V+H+   +K +   + AT++   LT    A+K L++R+R +  YL  + +G
Sbjct: 162 GAHEAEEIGVEHLLRDVKDTTVSTLATEVTGKLT----ALKGLDARLREIRSYLDLVVEG 217

Query: 161 EIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVD 219
           ++P  + +L  +  +   LP +  E+    F ++ ND +L+ YL+        ++ L++
Sbjct: 218 KLPLNHEILYHLQDVFNLLPNLNVEELVKAFAVKTNDMMLVIYLSSLIRSVIALHNLIN 276

Length = 303

>gnl|CDD|163695 cd08064, MPN_eIF3f, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 26/114 (22%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 92  LIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLH 151
            +FV     +   EAER+++D +A  K     S +  L + L  + ++++ L   +  + 
Sbjct: 141 SMFVPIPLELLYSEAERVALDLLA--KTLASPSRSAPLTSDLEQLEASLEKLQEMLDRVL 198

Query: 152 HYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLA 205
            Y+  +  G++  +N++ R +   L  +P ++ E+F+  F     D L++ YL+
Sbjct: 199 RYVEDVLAGKVKADNAIGRYLMDALTSVPKLDPEEFEKMFNSSLQDLLMVTYLS 252

Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and apoptosis. It enhances its association with the core eIF3 subunits during apoptosis, suggesting that eIF3f may inhibit translation by increasing the binding to the eIF3 complex during apoptosis. Thus, eIF3f may be an important negative regulator of cell growth and proliferation. Length = 265

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
cd08063	288	MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit	100.0
PLN03246	303	26S proteasome regulatory subunit; Provisional	100.0
cd08062	280	MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w	100.0
KOG3050	299	consensus COP9 signalosome, subunit CSN6 [Posttran	100.0
KOG2975	288	consensus Translation initiation factor 3, subunit	100.0
cd08064	265	MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi	100.0
KOG1556	309	consensus 26S proteasome regulatory complex, subun	100.0
PF13012	115	MitMem_reg: Maintenance of mitochondrial structure	99.92
cd08057	157	MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai	99.3
cd08065	266	MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi	98.85
cd08069	268	MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal	98.25
smart00232	135	JAB_MPN JAB/MPN domain. Domain in Jun kinase activ	96.66
cd07767	116	MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al	96.63
KOG1560	339	consensus Translation initiation factor 3, subunit	91.93
PF01398	114	JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte	90.16
cd08058	119	MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w	88.23
cd08068	244	MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun	80.22

>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6

Probab=100.00  E-value=1.6e-47  Score=343.80  Aligned_cols=201  Identities=48%  Similarity=0.727  Sum_probs=183.2

Q ss_pred             ceeecCCeeeccccC-----CCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeCCccceeeEeecee
Q 026489           26 TSIYLDGTPQGVMLK-----NPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYT  100 (238)
Q Consensus        26 ~~~~~~~~~~g~~~~-----~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~g~~~~~F~~ip~~  100 (238)
                      ++|+++..++|||++     ++++..||++|++++++||||++||....++++||+++|+++.++.+|.....|+++||+
T Consensus        77 kkV~~~~~vVGWY~tg~~~~~~~~~~Ih~~~~~~~~~pv~L~~D~~~~~~~~~lpi~ay~s~~~~~~~~~~~~F~~i~~~  156 (288)
T cd08063          77 KQVFKDLDFVGWYTTGPGGPTESDLPIHKQILEINESPVLLLLDPEANASGKDLPVTIYESVLELVDGEATLRFRELPYT  156 (288)
T ss_pred             HHhccCCceEEEEecCCCCCCHHHHHHHHHHHhhCCCcEEEEEccccccCCCCCceeEEEEEEeccCCccccEEEeeeeE
Confidence            566677777777763     446999999999999999999999987423678999999999999888778999999999


Q ss_pred             eeccchhHHHHHHHhhhCCCCCCChhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcCC
Q 026489          101 IETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLP  180 (238)
Q Consensus       101 I~t~EaErIgVd~l~~~~~~~~~~~~~~l~~~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~lP  180 (238)
                      |+++|||||||||+++..... +.+.+.+.++++++.+|++||++||+.|++||++|.+|++++|++|||+|+++|+++|
T Consensus       157 i~~~eaErIgv~~l~~~~~~~-~~~~~~~~~~l~~~~~al~~L~~rl~~i~~Yl~~V~~g~~~~d~~ilR~l~~~~~~lP  235 (288)
T cd08063         157 IETGEAERIGVDHVARGGASG-SSEKSTVAAHLQAQHNAIKMLNSRVELILEYLKAVPVGEVPPDHSILRSISALCSRLP  235 (288)
T ss_pred             EEeccCceeeHHHHHhcCCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCc
Confidence            999999999999999976433 2345677899999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026489          181 AIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR  227 (238)
Q Consensus       181 ~~~~~~f~~~~~~~~~D~lmvsyLs~Ltk~~~al~el~~Kl~~~~~~  227 (238)
                      .++.++|+++|++++||++|++|||+|||++.+|+++++||+.++++
T Consensus       236 ~~~~~~~~~~~~~~~~D~lmv~yLs~lt~~~~~l~~~~~k~~~~~~~  282 (288)
T cd08063         236 VLKSEAFREELLAEYNDVLLVAYLATLTKGCNTLNELVDKFNVVYDR  282 (288)
T ss_pred             cCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999997

CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleav

>PLN03246 26S proteasome regulatory subunit; Provisional

Probab=100.00  E-value=1e-46  Score=339.97  Aligned_cols=192  Identities=23%  Similarity=0.366  Sum_probs=173.6

Q ss_pred             ceeecCCeeecccc----CCCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeCC-c--cceeeEeec
Q 026489           26 TSIYLDGTPQGVML----KNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEG-I--PQLIFVRSS   98 (238)
Q Consensus        26 ~~~~~~~~~~g~~~----~~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~g-~--~~~~F~~ip   98 (238)
                      ++|+++...+|||.    .+++|.+||++|++++++||||+||+.+.  +++||+++|+++.++.+| .  ....|+++|
T Consensus        81 k~V~~~~~vVGWY~tg~~i~~~d~~IH~~~~~~~~~Pv~L~vD~~~~--~~~lpi~aY~s~~~~~~~~~~~~~~~F~~vp  158 (303)
T PLN03246         81 KRINAKEHVVGWYSTGPKLRENDLDIHELFNDYVPNPVLVIIDVQPK--ELGIPTKAYYAVEEVKENATQKSQKVFVHVP  158 (303)
T ss_pred             HHhCCCCcEEeeecCCCCCCcchHHHHHHHHhhCCCCeEEEEecCCC--CCCCceEEEEEEEeccCCCCcccccEEEECC
Confidence            55666666677776    37799999999999999999999999875  578999999999988764 2  358899999


Q ss_pred             eeeeccchhHHHHHHHhhhCCCCCCChhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489           99 YTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR  178 (238)
Q Consensus        99 ~~I~t~EaErIgVd~l~~~~~~~~~~~~~~l~~~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~  178 (238)
                      |+|+++|||||||||++|...+   .+.+.+.++++++.+|++||.+||+.|++||++|.+|++++|++|||+|+++|++
T Consensus       159 ~~i~~~EaE~Igve~l~r~~~~---~~~s~l~~~l~~~~~al~~L~~rl~~i~~Yl~~V~~g~~~~d~~IlR~l~~l~~~  235 (303)
T PLN03246        159 SEIGAHEAEEIGVEHLLRDVKD---TTVSTLATEVTGKLTALKGLDARLREIRSYLDLVVEGKLPLNHEILYHLQDVFNL  235 (303)
T ss_pred             eeeeecCHHHHHHHHHHhcccC---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999997653   2345678899999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026489          179 LPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFN  222 (238)
Q Consensus       179 lP~~~~~~f~~~~~~~~~D~lmvsyLs~Ltk~~~al~el~~Kl~  222 (238)
                      +|.+++++|+++|++++||++|++|||+|||+|++||++.++..
T Consensus       236 lP~l~~~~f~~~f~~~~nD~lmv~YLa~l~kt~~~l~e~l~~~~  279 (303)
T PLN03246        236 LPNLNVEELVKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKI  279 (303)
T ss_pred             CCCCCHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999988875

>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8

Probab=100.00  E-value=3e-46  Score=334.12  Aligned_cols=192  Identities=19%  Similarity=0.334  Sum_probs=174.1

Q ss_pred             ceeecCCeeecccc----CCCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeC-Cc-cceeeEeece
Q 026489           26 TSIYLDGTPQGVML----KNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIE-GI-PQLIFVRSSY   99 (238)
Q Consensus        26 ~~~~~~~~~~g~~~----~~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~-g~-~~~~F~~ip~   99 (238)
                      ++|++++..+|||+    .+++|..||++|+++|++||||+|||...  +++||+++|+++.++.+ |. ....|+|+||
T Consensus        76 kkv~~~e~vVGWY~tg~~~~~~d~~ih~~~~~~~~~pv~l~vd~~~~--~~~lpi~aY~s~~~~~~~g~~~~~~F~~vp~  153 (280)
T cd08062          76 KKVNAKEKIVGWYSTGPKLRPNDLDINELFRRYCPNPVLVIIDVRPK--DLGLPTEAYIAVEEVHDDGTPTSKTFVHVPS  153 (280)
T ss_pred             HHhCCCCCeEEEecCCCCCCcchHHHHHHHHHhCCCCEEEEEecCCC--CCCCceEEEEEeeeccCCCCcceeEEEEcce
Confidence            66777777788887    36699999999999999999999999875  67899999999998874 55 4799999999


Q ss_pred             eeeccchhHHHHHHHhhhCCCCCCChhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcC
Q 026489          100 TIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRL  179 (238)
Q Consensus       100 ~I~t~EaErIgVd~l~~~~~~~~~~~~~~l~~~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~l  179 (238)
                      +|+++|||||||||++|...+   .+.+.+.+++.++.+|+++|+.||+.|++||++|.+|+.++|++|||+|+++|+++
T Consensus       154 ~i~~~eaE~igve~l~r~~~~---~~~~~l~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~g~~~~d~~IlR~l~~~~~~l  230 (280)
T cd08062         154 EIGAEEAEEVGVEHLLRDIKD---VTVSTLSTRVTNKLNSLKGLQSKLKEIKDYLQLVVEGKLPINHQIIYNLQDIFNLL  230 (280)
T ss_pred             EeeccchHHHHHHHHHhhccC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHhC
Confidence            999999999999999996543   23456778999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026489          180 PAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFN  222 (238)
Q Consensus       180 P~~~~~~f~~~~~~~~~D~lmvsyLs~Ltk~~~al~el~~Kl~  222 (238)
                      |.+++++|+++|++++||++|++|||+|||+|++|+++.+...
T Consensus       231 P~l~~~~f~~~~~~~~nD~lmv~yLs~l~k~~~~l~~~~~~~~  273 (280)
T cd08062         231 PNLNLPELVKAFAVKTNDQMLVIYLSSLIRSVIALHNLINNKI  273 (280)
T ss_pred             CCCCHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888877664

This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural.

>KOG3050 consensus COP9 signalosome, subunit CSN6 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=3e-46  Score=320.51  Aligned_cols=212  Identities=47%  Similarity=0.740  Sum_probs=198.6

Q ss_pred             cceeecCCeeecccc----CCCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeCCccceeeEeecee
Q 026489           25 HTSIYLDGTPQGVML----KNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYT  100 (238)
Q Consensus        25 ~~~~~~~~~~~g~~~----~~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~g~~~~~F~~ip~~  100 (238)
                      +++||++-+..|||+    ++|.|..||++++..+++|+||.++|.... .++.|+.+|++....+||.++..|+|+.|+
T Consensus        83 ykqVFpdl~vlGwYttG~d~t~sd~~i~k~l~~i~esplflkLNp~t~~-t~~~pv~lfese~dvidg~~q~~f~~~tyt  161 (299)
T KOG3050|consen   83 YKQVFPDLYVLGWYTTGSDPTPSDIHIHKQLMDINESPLFLKLNPATNH-TDKDPVTLFESEIDVIDGEAQMLFVPLTYT  161 (299)
T ss_pred             HHHhcccceEEEEeecCCCCChhhhHHHHHHHhhhcCceEEEecchhcc-ccCCCceeeeeeheeecCcceeeeeeeEEE
Confidence            588999999999999    677999999999999999999999997653 344599999999999999999999999999


Q ss_pred             eeccchhHHHHHHHhhhCCCCCCChhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcCC
Q 026489          101 IETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLP  180 (238)
Q Consensus       101 I~t~EaErIgVd~l~~~~~~~~~~~~~~l~~~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~lP  180 (238)
                      ++++|||||||||+++..+++|+. .+.+..|+.++.+|++||+.|++.|++||++|.+|++++|++|||+...+|..||
T Consensus       162 l~teEaERIgVdHVA~lt~~~gge-~s~VaeHl~AQdsA~~ml~~Rvklil~Y~k~~e~G~l~~N~eILrea~~L~~~Lp  240 (299)
T KOG3050|consen  162 LATEEAERIGVDHVARLTPSDGGE-GSSVAEHLEAQDSAIKMLDNRVKLILAYLKKVEAGTLQPNFEILREAYALCHRLP  240 (299)
T ss_pred             EeehhhhhccchhheeeccCCCCC-cchHHHHHhhHHHHHHHHhhHHHHHHHHHhhhhcCCcCccHHHHHHHHHHHhhcc
Confidence            999999999999999988877654 3456899999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CCCCCCccCC
Q 026489          181 AIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRH-SRRGGRTAFI  238 (238)
Q Consensus       181 ~~~~~~f~~~~~~~~~D~lmvsyLs~Ltk~~~al~el~~Kl~~~~~~~-~~~~~~~~~~  238 (238)
                      .++.++|.+.|..++||+.+++||+.+|+++..||++++||+..++++ ++||||..|.
T Consensus       241 ~~~~~~F~d~F~~e~nd~~l~syl~~iT~~~~nMn~~vnKfn~~ydr~gt~R~~r~~~f  299 (299)
T KOG3050|consen  241 VMESEKFQDNFYMECNDVGLISYLGTITKCCNNMNEVVNKFNTLYDRQGTRRRMRGLFF  299 (299)
T ss_pred             ccchHHHhHHHHHhcchhhHHHHHHHHHHhhccHHHHHHHHHHHHHhhhhhccccccCC
Confidence            999999999999999999999999999999999999999999999999 5999998874

>KOG2975 consensus Translation initiation factor 3, subunit f (eIF-3f) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.8e-45  Score=316.61  Aligned_cols=197  Identities=19%  Similarity=0.296  Sum_probs=184.7

Q ss_pred             cccccccceeecCCeeeccccCCCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeCCcc-ceeeEee
Q 026489           19 SIRRCSHTSIYLDGTPQGVMLKNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIP-QLIFVRS   97 (238)
Q Consensus        19 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~g~~-~~~F~~i   97 (238)
                      .-+|+|+++...||+.||.++ +.++.+||+||.+++++||||+||++.+  ++.+++++|++...|++|.. ..+|.|+
T Consensus        90 l~~k~npnE~vvGWyaTg~dv-t~~sslihdyYare~~~pvhLtVDT~~~--n~rm~ikaYvss~~Gvpg~~~~~mF~pl  166 (288)
T KOG2975|consen   90 LHKKVNPNELVVGWYATGHDV-TEHSSLIHDYYAREAPNPVHLTVDTSLQ--NGRMSIKAYVSSLMGVPGRTMGVMFTPL  166 (288)
T ss_pred             HhcccCCCceeEEEEecCCCc-ccchhHHHHHhhccCCCCeEEEEecccc--CCccceeEEEEeccCCCCcccceeeeee
Confidence            457899999999999999999 9999999999999999999999999998  78999999999999999865 6899999


Q ss_pred             ceeeeccchhHHHHHHHhhhCCCCCCChhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHh
Q 026489           98 SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLR  177 (238)
Q Consensus        98 p~~I~t~EaErIgVd~l~~~~~~~~~~~~~~l~~~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~  177 (238)
                      |+++.++|+||+|++.+.+...+  .++...+.++|+++..|...|+++|+.+++|+++|++|+.+||+.|||+|+++++
T Consensus       167 pvel~~~~~ervgl~li~kt~~s--p~r~~~l~~dLqQv~~at~~l~~~L~~Vl~YVedVl~gk~~pdn~VGR~Lmd~v~  244 (288)
T KOG2975|consen  167 PVELAYYDAERVGLDLIEKTSFS--PSRVAGLSSDLQQVEGATARLQSLLERVLKYVEDVLAGKVKPDNAVGRFLMDLVT  244 (288)
T ss_pred             eeEEeecchhhhHHHHHHHhccC--hhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHH
Confidence            99999999999999999998733  2355678899999999999999999999999999999999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026489          178 RLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNT  223 (238)
Q Consensus       178 ~lP~~~~~~f~~~~~~~~~D~lmvsyLs~Ltk~~~al~el~~Kl~~  223 (238)
                      ++|.+.+++|+.+|+++++|++|++|||++||+|+   +|++||..
T Consensus       245 ~vP~l~p~~Fe~mfn~nLrD~Lmv~yLa~ltqTQl---~l~EKL~~  287 (288)
T KOG2975|consen  245 AVPKLVPDDFETMFNSNLRDLLMVIYLANLTQTQL---ALNEKLVN  287 (288)
T ss_pred             hcCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHhhc
Confidence            99999999999999999999999999999999999   88889875

>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

Probab=100.00  E-value=3.3e-42  Score=306.08  Aligned_cols=187  Identities=18%  Similarity=0.310  Sum_probs=165.0

Q ss_pred             ceeecCCeeeccccC----CCCcHHHHHHHhccCC--CceEEEEcCCCCCCCCCCCeeEEEEeeeeeCCc-cceeeEeec
Q 026489           26 TSIYLDGTPQGVMLK----NPICTSIKLYLMDINE--SPVYVLLNPSINPAQKDLPVTIFESELHVIEGI-PQLIFVRSS   98 (238)
Q Consensus        26 ~~~~~~~~~~g~~~~----~~~~~~IH~~~~~~~~--~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~g~-~~~~F~~ip   98 (238)
                      ++|+.+...+|||++    ++++..||++|+++++  +||||++|+...  +++||++||++.+.+..+. ....|++||
T Consensus        70 kkv~~~~~vVGWY~tg~~~~~~~~~Ih~~~~~~~~~~~pI~L~~D~~~~--~~~l~i~ay~~~~~~~~~~~~~~~F~~ip  147 (265)
T cd08064          70 QKVNPKEVIVGWYATGSEITEHSALIHDYYSRECTSYNPIHLTVDTSLD--DGKMSIKAYVSSPLGVPGKTLGSMFVPIP  147 (265)
T ss_pred             HHhCCCCcEEeeeeCCCCCCccHHHHHHHHHhhCCCCCCEEEEEeCCCC--CCCcceEEEEEEecccCCCCcceEEEEcc
Confidence            455555666666652    5579999999999998  999999999876  4589999999998877654 469999999


Q ss_pred             eeeeccchhHHHHHHHhhhCCCCCCChhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489           99 YTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR  178 (238)
Q Consensus        99 ~~I~t~EaErIgVd~l~~~~~~~~~~~~~~l~~~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~  178 (238)
                      ++|.++|||||||||+++.....+  ..+.+.++++++.+|+++|.+||+.|.+||++|.+|+.++|++|||+|++++++
T Consensus       148 ~~i~~~eaE~i~v~~l~~~~~~~~--~~~~~~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~g~~~~d~~i~r~l~~~~~~  225 (265)
T cd08064         148 LELLYSEAERVALDLLAKTLASPS--RSAPLTSDLEQLEASLEKLQEMLDRVLRYVEDVLAGKVKADNAIGRYLMDALTS  225 (265)
T ss_pred             eeeecCcHHHHHHHHHHhhccCCc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhh
Confidence            999999999999999999876532  233466999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 026489          179 LPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE  216 (238)
Q Consensus       179 lP~~~~~~f~~~~~~~~~D~lmvsyLs~Ltk~~~al~e  216 (238)
                      +|.+++++|+++|++++||++|++|||+|||+|++|+|
T Consensus       226 lp~~~~~~f~~~~~~~~~D~lmv~YLs~l~k~~~~l~e  263 (265)
T cd08064         226 VPKLDPEEFEKMFNSSLQDLLMVTYLSNLTKTQLALAE  263 (265)
T ss_pred             CCCCCHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999994443

Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap

>KOG1556 consensus 26S proteasome regulatory complex, subunit RPN8/PSMD7 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-40  Score=285.64  Aligned_cols=194  Identities=23%  Similarity=0.374  Sum_probs=181.5

Q ss_pred             cceeecCCeeeccccCCC----CcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeC-Ccc-ceeeEeec
Q 026489           25 HTSIYLDGTPQGVMLKNP----ICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIE-GIP-QLIFVRSS   98 (238)
Q Consensus        25 ~~~~~~~~~~~g~~~~~~----~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~-g~~-~~~F~~ip   98 (238)
                      |++|.+.+..+||||++|    +|+.||+.+.+||++|+++++|..+.  +-+||..||.++.+..+ |++ +..|.|+|
T Consensus        83 fkKvNakekivGWYhTGPkl~~nDl~In~l~k~y~pnpvLvIIdvkpk--~~gLPT~AY~aVeev~dDgt~t~ktF~Hvp  160 (309)
T KOG1556|consen   83 FKKVNAKEKVVGWYHTGPKLRENDLDINELLKRYVPNPVLVIIDVKPK--ELGLPTEAYIAVEEVKDDGTPTSKTFVHVP  160 (309)
T ss_pred             HHHhcchhheeeeeccCCccccchhhHHHHHhhcCCCceEEEEecccc--cCCCCchheeeeeeeecCCCCccceeEecC
Confidence            378888999999999777    99999999999999999999999886  67899999999998876 554 68999999


Q ss_pred             eeeeccchhHHHHHHHhhhCCCCCCChhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489           99 YTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR  178 (238)
Q Consensus        99 ~~I~t~EaErIgVd~l~~~~~~~~~~~~~~l~~~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~  178 (238)
                      ++|+++|||+|||||+.|.+.+   .+.+++...+.++..+++.|+.+|..|.+||++|.+|++|.||+|+.++|++++.
T Consensus       161 s~I~AeEAEEvGVEHLlRDikd---~t~gtla~rit~ql~sLkgl~~~L~eI~~YL~~Vi~g~lpiNh~Il~~lQdvfNl  237 (309)
T KOG1556|consen  161 SEIEAEEAEEVGVEHLLRDIKD---TTVGTLATRITNQLMSLKGLQSRLREIRSYLDKVIDGKLPINHEILYQLQDVFNL  237 (309)
T ss_pred             cccchhHHHHhhHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhh
Confidence            9999999999999999998875   4567899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026489          179 LPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNT  223 (238)
Q Consensus       179 lP~~~~~~f~~~~~~~~~D~lmvsyLs~Ltk~~~al~el~~Kl~~  223 (238)
                      +|.+...+|.+.|+...||.||+.|||+|+|++.|||+|.++...
T Consensus       238 lP~l~~~~~~~a~~vktndql~~iY~sslvrsViAlhdLi~Nkl~  282 (309)
T KOG1556|consen  238 LPNLTRNELVKAFNVKTNDQLMVIYLSSLVRSVIALHDLINNKLA  282 (309)
T ss_pred             CccccchhhhhhhccccCceeeeeeHHHHHHHHHHHHHHHHhHhh
Confidence            999999999999999999999999999999999999999987653

>PF13012 MitMem_reg: Maintenance of mitochondrial structure and function; PDB: 2O96_B 2O95_A

Probab=99.92  E-value=7.1e-27  Score=182.80  Aligned_cols=114  Identities=38%  Similarity=0.612  Sum_probs=13.5

Q ss_pred             cchhHHHHHHHhhhCCCCCCChhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcCCCCC
Q 026489          104 VEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIE  183 (238)
Q Consensus       104 ~EaErIgVd~l~~~~~~~~~~~~~~l~~~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~lP~~~  183 (238)
                      +|||||||+|+++....+   ..+.+.++++++.+|+.+|+.|++.+..||++|.+|+.++|+++||+|+++|+++|.++
T Consensus         1 eEaErigv~~l~~~~~~~---~~s~~~~~l~~~~~al~~L~~~l~~i~~Yl~~v~~g~~~~d~~i~r~l~~l~~~lp~~~   77 (115)
T PF13012_consen    1 EEAERIGVDHLARGLGDH---YYSSLSSQLENEQNALKMLHKRLWQILDYLEDVISGEIPPDHEILRQLQDLLSSLPKYD   77 (115)
T ss_dssp             SHHHHHHHHHHHHH--S---------------------------------------------------------------
T ss_pred             CchHHHHHHHHHccCCCc---cccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcCCCchhHHHHHHHHHHhccccc
Confidence            589999999999965442   23477899999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 026489          184 SEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDK  220 (238)
Q Consensus       184 ~~~f~~~~~~~~~D~lmvsyLs~Ltk~~~al~el~~K  220 (238)
                      +++|+++|.++++|.+||.||+++||++.+++++.+|
T Consensus        78 ~~~~~~~~~~~~~D~l~v~yL~~l~k~~~~l~e~l~~  114 (115)
T PF13012_consen   78 PEEFEEEFNSEINDVLMVSYLAKLTKKQHALNELLNN  114 (115)
T ss_dssp             -------------------------------------
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhHHHHHHHHHHhc
Confidence            9999999999999999999999999999988888765

>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic

Probab=99.30  E-value=3e-12  Score=105.44  Aligned_cols=80  Identities=25%  Similarity=0.340  Sum_probs=65.4

Q ss_pred             cceeecCCeeeccccC--------CCCcHHHHHHHhcc-CCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeCCccceeeE
Q 026489           25 HTSIYLDGTPQGVMLK--------NPICTSIKLYLMDI-NESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFV   95 (238)
Q Consensus        25 ~~~~~~~~~~~g~~~~--------~~~~~~IH~~~~~~-~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~g~~~~~F~   95 (238)
                      +++|+++..++|||+.        ...+..||++|+.+ +++||+|++||.....+++||+++|++.....      .+.
T Consensus        69 ~~~v~~~~~vVGWY~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~L~~D~~~~~~~~~l~i~ay~~~~~~~------~~~  142 (157)
T cd08057          69 HKKVYPQEKIVGWYSIGSNNSNEISKSDNSLHSQFSLISEENPLILILDPSLQSDSEKLEISTFTSAQREE------NGA  142 (157)
T ss_pred             HHHhCCCCCEEEEEeecCCCCCCCChhHHHHHHHHHhccCCCCEEEEEcCCcccCCCcccEEEEEEecCCC------CCc
Confidence            3677888889999983        34589999999998 89999999999763336789999999985322      244


Q ss_pred             eeceeeeccchhHHH
Q 026489           96 RSSYTIETVEAERIS  110 (238)
Q Consensus        96 ~ip~~I~t~EaErIg  110 (238)
                      ++||+++++|+||||
T Consensus       143 ~~~~~i~~~e~E~I~  157 (157)
T cd08057         143 EITYEIGTEETERIA  157 (157)
T ss_pred             eeeeEEecccccccC
Confidence            999999999999996

This family contains MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains variants lacking key residues in the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation initiation factor 3 subunits f and h do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Rpn7 is known to be critical for the integrity of the 26S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. CSN6 is a highly conserved protein complex with diverse functions, including several import

>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

Probab=98.85  E-value=1.6e-08  Score=90.32  Aligned_cols=132  Identities=13%  Similarity=0.104  Sum_probs=93.1

Q ss_pred             ceeecCCeeeccccCCC---C--cHHHHHHHhccC--CCceEEEEcCCCCCCCCCCCeeEEEEeeeeeC-----------
Q 026489           26 TSIYLDGTPQGVMLKNP---I--CTSIKLYLMDIN--ESPVYVLLNPSINPAQKDLPVTIFESELHVIE-----------   87 (238)
Q Consensus        26 ~~~~~~~~~~g~~~~~~---~--~~~IH~~~~~~~--~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~-----------   87 (238)
                      .++..+...+|||++.|   +  ...||.+|....  +.||+|++|+... .++.++++||...+.+.+           
T Consensus        73 r~v~~~e~iVGWY~S~p~~~~~~~s~id~~~~~q~~~~~~v~Li~D~~~s-~~g~l~lkAyrl~~~~~~~~~~~~~~~~~  151 (266)
T cd08065          73 REVNVDHNHVGWYQSTYLGSFFTRDLIETQYNYQEAIEESVVLVYDPSKT-SQGSLSLKAYRLSEKFMELYKEGKFSTES  151 (266)
T ss_pred             HHhCCCCcEEEeEeecCCCCcCCHHHHHHHHHHhccCCCCEEEEECCCcc-cccceeeEEEEEcHHHHHHhhcCCcCHHH
Confidence            45666778888888444   2  678899888764  7799999999753 257899999999887654           


Q ss_pred             ----C-ccceeeEeeceeeeccchhHHHHHHHhhhCCCCCCChhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026489           88 ----G-IPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQ  158 (238)
Q Consensus        88 ----g-~~~~~F~~ip~~I~t~EaErIgVd~l~~~~~~~~~~~~~~l~~~l~~~~~al~~L~~rL~~i~~YL~~V~  158 (238)
                          + .....|.+||++|...+-+.+.+..+....+....+...-..+....+...+..|.+.+|.+..+.++..
T Consensus       152 l~~~~~~~~~if~eiPv~i~n~~l~~~~L~~l~~~~~~~~~~~~~l~l~~~~~le~~l~~l~~~id~l~~e~~~~~  227 (266)
T cd08065         152 LREANLTFSNIFEEIPVVIRNSHLVNALLSELEEDSPSSQSDFDRLDLSTNSFLEKNLELLMESVDELSQEQGKFN  227 (266)
T ss_pred             HHHhcCchhcEEEEEEEEEEchHHHHHHHHhcccCCCcccCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2 2369999999999999999999999976543310111111123445566667777777777776666653

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different

>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

Probab=98.25  E-value=3.5e-06  Score=75.43  Aligned_cols=91  Identities=8%  Similarity=-0.032  Sum_probs=74.8

Q ss_pred             eeecCCeeecccc--------CCCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeC----Cc-----
Q 026489           27 SIYLDGTPQGVML--------KNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIE----GI-----   89 (238)
Q Consensus        27 ~~~~~~~~~g~~~--------~~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~----g~-----   89 (238)
                      .+..+...+||||        ++..|..+|.+|.+.++.+|+|++||..+...+++.++||...+.+..    ++     
T Consensus        82 ~~~~~~~vVGWYHSHP~~g~~~S~~Dv~tq~~yq~~~~~~V~lViDP~~t~~~g~~~i~Afr~~~~~~~~~~~~~~~s~~  161 (268)
T cd08069          82 QTGRPENVVGWYHSHPGYGCWLSGIDVNTQQLNQQLQDPFVAVVVDPIRSLVKGKVVIGAFRTIPPGYKPLEPRQTTSNI  161 (268)
T ss_pred             HhCCCceeEeeeccCCCcCCcCCHHHHHHHHHHHhcCCCcEEEEEeCCccccCCcceeeEEEEECccccccCcccCcccc
Confidence            3556788999998        345788999999999888999999986542367899999999987643    11     


Q ss_pred             -------------cceeeEeeceeeeccchhHHHHHHHhhh
Q 026489           90 -------------PQLIFVRSSYTIETVEAERISVDHVAHL  117 (238)
Q Consensus        90 -------------~~~~F~~ip~~I~t~EaErIgVd~l~~~  117 (238)
                                   ....|.+||+++...+.|+..++.+.+-
T Consensus       162 ~~~~~~~~~~~~~~~~~y~~l~i~~~~s~l~~~~L~~l~~~  202 (268)
T cd08069         162 GHLPKPKIEDFGGHNKQYYSLPIEYFKSSLDRKLLLNLWNK  202 (268)
T ss_pred             CccCcHHHHHhCchhcEEEEeeeEEecCHHHHHHHHHHHHH
Confidence                         3589999999999999999999999984

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i

>smart00232 JAB_MPN JAB/MPN domain

Probab=96.66  E-value=0.0019  Score=50.57  Aligned_cols=56  Identities=13%  Similarity=0.039  Sum_probs=44.8

Q ss_pred             eeecCCeeeccccC--------CCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEee
Q 026489           27 SIYLDGTPQGVMLK--------NPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESEL   83 (238)
Q Consensus        27 ~~~~~~~~~g~~~~--------~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~   83 (238)
                      ....+..++||||+        +..|..+|..+......++++.+|+.... .+.+++++|+...
T Consensus        71 ~~~~~~~~vGwyhshp~~~~~pS~~D~~~~~~~~~~~~~~~~~~v~~~~s~-~g~~~~~af~~~~  134 (135)
T smart00232       71 KVNKDLEIVGWYHSHPDESPFPSEVDVATHESYQAPWPISVVLIVDPIKSF-QGRLSLRAFRLTP  134 (135)
T ss_pred             hhCCCceEEEEEEcCCCCCCCcCHHHHHHHHHHHhcCCceEEEEECCCccc-cCcEEEEEEEecC
Confidence            35688899999982        23488889988888888999999988753 3779999999853

Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function.

>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains

Probab=96.63  E-value=0.0016  Score=49.78  Aligned_cols=52  Identities=6%  Similarity=-0.019  Sum_probs=40.0

Q ss_pred             ceeecCCeeeccccC--------CCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEE
Q 026489           26 TSIYLDGTPQGVMLK--------NPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIF   79 (238)
Q Consensus        26 ~~~~~~~~~~g~~~~--------~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aY   79 (238)
                      .....|.+++||||+        ++.+...|..|.+..+++++|++|+...  +.++|++||
T Consensus        57 ~~~~~~~~iVGwyhshp~~~~~~s~~dv~~~~~~q~~~~~~v~li~~~~~~--~~~~~~~~~  116 (116)
T cd07767          57 KKLNAGLRIVGWYHTHPKPSCFLSPNDLATHELFQRYFPEKVMIIVDVKPK--DLGNSWKCY  116 (116)
T ss_pred             HHhcCCCeEEEEEEcCCCCCCccCHHHHHHHHHHHHhCCCCEEEEEECCCc--cCCCCcccC
Confidence            445578899999983        3355677888887777899999998874  456888887

MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains are found in the N-terminal termini of proteins with a variety of functions; they are components of the proteasome regulatory subunits, the signalosome (CSN), eukaryotic translation initiation factor 3 (eIF3) complexes, and regulators of transcription factors. These domains are isopeptidases that release ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. Catalytically active MPN domains contain a metalloprotease signature known as the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif. For example, Rpn11 (also known as POH1 or PSMD14), a subunit of the 19S proteasome lid is involved in the ATP-dependent degradation of ubiquitinated proteins, contains the conserved JAMM motif involved in zinc ion coordination. Poh1 is a regulator of c-Jun, an important regulator of cell proliferation, differentiation, survival and death. J

>KOG1560 consensus Translation initiation factor 3, subunit h (eIF-3h) [Translation, ribosomal structure and biogenesis]

Probab=91.93  E-value=0.78  Score=41.46  Aligned_cols=139  Identities=11%  Similarity=0.122  Sum_probs=80.0

Q ss_pred             cccccccceeecCCeeeccccCCC-CcHHHHHHHh--ccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeC----C---
Q 026489           19 SIRRCSHTSIYLDGTPQGVMLKNP-ICTSIKLYLM--DINESPVYVLLNPSINPAQKDLPVTIFESELHVIE----G---   88 (238)
Q Consensus        19 ~~~~~~~~~~~~~~~~~g~~~~~~-~~~~IH~~~~--~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~----g---   88 (238)
                      ..|.+|....|.||+...++- +- ...++-.+|.  .-++.-|.|+.||.-+ .++.|-.+||--.++..+    +   
T Consensus        90 rlr~vnid~~hVGwYqs~~vg-s~lS~~lveSqy~YQ~a~pesVvliYD~~ks-sqG~L~lrAyrLTp~am~~~kekdwt  167 (339)
T KOG1560|consen   90 RLRYVNIDHLHVGWYQSAYVG-SFLSPALVESQYAYQKAIPESVVLIYDPIKS-SQGTLSLRAYRLTPEAMAAHKEKDWT  167 (339)
T ss_pred             HhhhcCccceeeeeeeeehhc-cccCHHHHHHHHHHHhcCCccEEEEeccccc-cCceEEeehhhcCHHHHHHHhcCCCC
Confidence            356667666665555433222 22 2334444444  2356679999998754 368899999998875421    1   


Q ss_pred             ---------ccceeeEeeceeeeccchhHHHHHHHh--hhCCCCCC-------ChhhhhHhhHHHHHHHHHHHHHHHHHH
Q 026489           89 ---------IPQLIFVRSSYTIETVEAERISVDHVA--HLKPSDGG-------SAATQLAAHLTGIHSAIKMLNSRIRVL  150 (238)
Q Consensus        89 ---------~~~~~F~~ip~~I~t~EaErIgVd~l~--~~~~~~~~-------~~~~~l~~~l~~~~~al~~L~~rL~~i  150 (238)
                               .....|.++|.-|..+----|-+..+.  +....+..       ++...+..++..+...+..|+.-+..+
T Consensus       168 pealk~~nltyenmfeElPIVIknS~L~nvlmseLs~~e~c~sdk~~~~~fdlgs~t~leknir~lme~vDEl~qe~~~l  247 (339)
T KOG1560|consen  168 PEALKSANLTYENMFEELPIVIKNSHLANVLMSELSEPEDCESDKPLHSNFDLGSGTRLEKNIRLLMERVDELHQEIVNL  247 (339)
T ss_pred             HHHHHhcCCCHHHHHhhcCeeeeccHHHHHHHHhccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                     136899999999988765455554444  22111100       112334455555555555555555556


Q ss_pred             HHHHHHhhc
Q 026489          151 HHYLVAMQK  159 (238)
Q Consensus       151 ~~YL~~V~~  159 (238)
                      -+|-+.+..
T Consensus       248 ~kyqr~~~r  256 (339)
T KOG1560|consen  248 NKYQRQLAR  256 (339)
T ss_pred             HHHHHHHHH
Confidence            667666543

>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors

Probab=90.16  E-value=0.083  Score=40.54  Aligned_cols=32  Identities=9%  Similarity=0.016  Sum_probs=24.8

Q ss_pred             ceeecCCeeecccc--------CCCCcHHHHHHHhccCCC
Q 026489           26 TSIYLDGTPQGVML--------KNPICTSIKLYLMDINES   57 (238)
Q Consensus        26 ~~~~~~~~~~g~~~--------~~~~~~~IH~~~~~~~~~   57 (238)
                      +.++.+..++|||+        +++.|..+|++|.+.+++
T Consensus        75 ~~~~~~~~iVGWY~s~p~~~~~~S~~di~~q~~~q~~~~~  114 (114)
T PF01398_consen   75 KKVNPNLEIVGWYHSHPNISCFPSPTDIETQKQYQRMNPN  114 (114)
T ss_dssp             HHCSTTSEEEEEEEEESSS-SS--HHHHHHHHHHHHHTTT
T ss_pred             ccccccceEEEEEEccCCccccCCHHHHHHHHHHHHhCCC
Confidence            45667889999998        356889999999988764

This family is also known as the MPN domain [] and PAD-1-like domain []. It has been shown that this domain occurs in prokaryotes []. Mov34 proteins act as the regulatory subunit of the 26 proteasome, which is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of this domain is unclear, but it is found in the N terminus of the proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. A number of the proteins associated with this family belong to MEROPS peptidase family M67 (clan M-). This includes the Poh1 peptidase of Saccharomyces cerevisiae (Baker's yeast) which is a component of the 19S proteasome regulatory particle.; GO: 0005515 protein binding; PDB: 2ZNV_D 2ZNR_A 4E0Q_A 2P87_A 2P8R_A 2O96_B 2O95_A 3RZU_F 3RZV_A.

>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic

Probab=88.23  E-value=0.63  Score=36.16  Aligned_cols=50  Identities=8%  Similarity=0.020  Sum_probs=33.0

Q ss_pred             eeecCCeeecccc--------CCCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEE
Q 026489           27 SIYLDGTPQGVML--------KNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFE   80 (238)
Q Consensus        27 ~~~~~~~~~g~~~--------~~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYe   80 (238)
                      ..-.|...+||||        |+..|..-|.+|....+.-++|++|+..    ..+.+++|.
T Consensus        60 ~~~~g~~~vG~YHSHP~~~~~pS~~Di~~~~~~q~~~p~~~~lI~s~~~----~~~~~~a~r  117 (119)
T cd08058          60 QTGRPLLVVGWYHSHPTFTAWLSSVDIHTQASYQLMLPEAIAIVVSPKH----RNKDTGIFR  117 (119)
T ss_pred             HhCCCCeEEEEEecCCCCCCccCHHHHHHHHHHhccCCCeEEEEECcCC----CCcccceEE
Confidence            3556789999998        2334444444455555677999999853    256677764

This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot

>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex

Probab=80.22  E-value=5.4  Score=35.40  Aligned_cols=73  Identities=11%  Similarity=-0.021  Sum_probs=44.6

Q ss_pred             cCCeeecccc--------CCCCcHHHHHHHhccCCCceEEEEcCCCC---CCCCCCCeeEEEEeeeeeCCccceeeEeec
Q 026489           30 LDGTPQGVML--------KNPICTSIKLYLMDINESPVYVLLNPSIN---PAQKDLPVTIFESELHVIEGIPQLIFVRSS   98 (238)
Q Consensus        30 ~~~~~~g~~~--------~~~~~~~IH~~~~~~~~~PI~L~vD~~~~---~~~~~LPi~aYes~~~~~~g~~~~~F~~ip   98 (238)
                      .++.++||||        |+..|..-+.-|-...+.-++|++++...   ...++.-+++|....-..  .+.....++|
T Consensus        87 rgl~vVGwYHSHP~~~a~PS~~Dv~tq~~~q~~~p~~v~lIvS~~~~~~~~~~~~~~i~aFr~~~g~~--~~~~~~~e~p  164 (244)
T cd08068          87 RPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDSGFVGLIFSCFNEDKSTKMGEVQVTCFQSVQGNK--AGQYERIEVP  164 (244)
T ss_pred             CCceEEEEEecCCCCCCCCCHhHHHHHHHHHhhCCCcEEEEEEecCCccccccCCEEEEEEEecCCCC--CCcceEEEee
Confidence            6789999998        33344443333333445669999986532   112456688888853211  1246678888


Q ss_pred             eeeecc
Q 026489           99 YTIETV  104 (238)
Q Consensus        99 ~~I~t~  104 (238)
                      ++|...
T Consensus       165 l~i~~~  170 (244)
T cd08068         165 LEIVPT  170 (244)
T ss_pred             eEEecC
Confidence            887753

BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
2o95_A	187	26S proteasome non-ATPase regulatory subunit 7; PS	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Length = 187

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 41  NPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSS 98
           +    +I   +     + V V+++    P    LP   + S  E+H         F   +
Sbjct: 103 HKNDIAINELMKRYCPNSVLVIIDVK--PKDLGLPTEAYISVEEVHDDGTPTSKTFEHVT 160

Query: 99  YTIETVEAERISVDHVAHLKPSDGGSAAT 127
             I   EAE + V+H+   +     +  T
Sbjct: 161 SEIGAEEAEEVGVEHLL--RDIKDTTVGT 187

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 26/205 (12%), Positives = 65/205 (31%), Gaps = 50/205 (24%)

Query: 37  VMLKNPICTSIKLY--LMDINESPVYVLLNPSINP-------------AQKDLPVTIFES 81
           +M K+ +  +++L+  L+   E  V   +   +                Q  +   ++  
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 82  ELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSD-------GGSAATQLAAHLT 134
           +   +    Q+    +   ++     R     +  L+P+         GS  T +A  + 
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 135 GIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPA------------- 181
             +     ++ +I     +L            ++L  +  LL ++               
Sbjct: 172 LSYKVQCKMDFKI----FWLNL---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 182 --IESEKFQDDFLM---EYNDTLLI 201
             I S + +   L+    Y + LL+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLV 249

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
4b4t_U	338	RPN8, 26S proteasome regulatory subunit RPN8; hydr	100.0
2o95_A	187	26S proteasome non-ATPase regulatory subunit 7; PS	99.66
4b4t_V	306	26S proteasome regulatory subunit RPN11; hydrolase	99.06
4e0q_A	141	COP9 signalosome complex subunit 6; MPN (MPR1P and	98.89

>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-43  Score=317.73  Aligned_cols=192  Identities=20%  Similarity=0.324  Sum_probs=107.7

Q ss_pred             ceeecCCeeecccc----CCCCcHHHHHHHhccCC-CceEEEEcCCCCCCCCCCCeeEEEEeeeeeCC-cc-ceeeEeec
Q 026489           26 TSIYLDGTPQGVML----KNPICTSIKLYLMDINE-SPVYVLLNPSINPAQKDLPVTIFESELHVIEG-IP-QLIFVRSS   98 (238)
Q Consensus        26 ~~~~~~~~~~g~~~----~~~~~~~IH~~~~~~~~-~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~g-~~-~~~F~~ip   98 (238)
                      ++|+++..++|||+    ++++|+.||++|+++|+ +|+||++|+...  +++||+++|++..++.++ .. ...|+++|
T Consensus        81 kkV~~~e~iVGWY~tg~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~--~~~lpi~aY~s~~~~~~~~~~~~~~F~~lp  158 (338)
T 4b4t_U           81 KKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQ--GVGLPTDAYVAIEQVKDDGTSTEKTFLHLP  158 (338)
T ss_dssp             HHHCCSCEEEEEEECCSSCCSTHHHHHHHHGGGCCSCCCEEEECSCCC--SSSCSEEEEEEEEECSSCSTTCEEEEEEEC
T ss_pred             hhcCccCCEEEEEecCCCCCccHHHHHHHHHhccCCCcEEEEecCCCC--CCCcceEEEEeehhccCCCcccccEEEEee
Confidence            55666666677776    36799999999999985 899999999876  678999999999887664 33 68999999


Q ss_pred             eeeeccchhHHHHHHHhhhCCCCCCChhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489           99 YTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR  178 (238)
Q Consensus        99 ~~I~t~EaErIgVd~l~~~~~~~~~~~~~~l~~~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~  178 (238)
                      |+|+++|||||||||+++...+.   +.+.+..++.++.+|+++|+.||+.|.+||++|.+|++++|++|||+|+++|++
T Consensus       159 ~~i~~~eaE~Igv~~l~r~~~~~---~~~~l~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~g~~~~n~~ilr~l~~~~~~  235 (338)
T 4b4t_U          159 CTIEAEEAEEIGVEHLLRDVRDQ---AAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNL  235 (338)
T ss_dssp             EEECSCHHHHHHHHHHHHHHSSC---C---CHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred             eEeecCcHHHHHHHHHHhccccC---cccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhh
Confidence            99999999999999999976542   345678899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCh-----------------HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026489          179 LPAIES-----------------EKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFN  222 (238)
Q Consensus       179 lP~~~~-----------------~~f~~~~~~~~~D~lmvsyLs~Ltk~~~al~el~~Kl~  222 (238)
                      +|.+..                 ++|+++|+.++||++||+|||+|||+|.+||+++++..
T Consensus       236 lP~l~~~~~~~~~~~~~~~~~~~~~f~~~f~~~~nD~Lmv~YLs~L~rs~~al~eli~nk~  296 (338)
T 4b4t_U          236 LPNLGTPDDDEIDVENHDRINISNNLQKALTVKTNDELMVIYISNLVRSIIAFDDLIENKI  296 (338)
T ss_dssp             -------------------------------------------------------------
T ss_pred             CCcCCcccccccccccccccchhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998854                 45999999999999999999999999999999998763

>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A

Probab=99.66  E-value=3.1e-16  Score=131.19  Aligned_cols=94  Identities=17%  Similarity=0.175  Sum_probs=77.8

Q ss_pred             cceeecCCeeeccccC----CCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeC-Cc-cceeeEeec
Q 026489           25 HTSIYLDGTPQGVMLK----NPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIE-GI-PQLIFVRSS   98 (238)
Q Consensus        25 ~~~~~~~~~~~g~~~~----~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~-g~-~~~~F~~ip   98 (238)
                      +++++.+...+|||+.    ++.|..||++|.+++++|++|++|+...  .+++|+++|++.+++.+ |. ....|+++|
T Consensus        83 ~~~v~~~~~iVGWY~s~~~~s~~d~~i~~~~~~~~~~~v~Livd~~~~--~~~l~i~ay~~~~~~~~~~~~~~~~F~~ip  160 (187)
T 2o95_A           83 FKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPK--DLGLPTEAYISVEEVHDDGTPTSKTFEHVT  160 (187)
T ss_dssp             HHTTSSSCEEEEEEECCSSCCTTHHHHHHHHTTTCTTCEEEEECCCTT--C-CCSEEEEEEEEECC----CCEEEEEEEE
T ss_pred             HHHhCCCCCEEEEEcCCCcCCcccHHHHHHHHhcCCCCEEEEECCCCC--CCCcCeEEEEEechhcCCCCcccCEEEEee
Confidence            3556677888888873    5588999999999999999999999764  35699999999988765 33 378999999


Q ss_pred             eeeeccchhHHHHHHHhhhCCC
Q 026489           99 YTIETVEAERISVDHVAHLKPS  120 (238)
Q Consensus        99 ~~I~t~EaErIgVd~l~~~~~~  120 (238)
                      ++|+++|||||||||++|...+
T Consensus       161 ~~I~~~eaE~i~v~~l~~~~~~  182 (187)
T 2o95_A          161 SEIGAEEAEEVGVEHLLRDIKD  182 (187)
T ss_dssp             EEECCCHHHHHHHHHHHHHCCS
T ss_pred             EEEecCcHHHHHHHHHHhcCCC
Confidence            9999999999999999998765

>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.06  E-value=8.6e-11  Score=105.49  Aligned_cols=161  Identities=11%  Similarity=0.069  Sum_probs=113.1

Q ss_pred             ceeecCCeeeccccCCC--------CcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeC----------
Q 026489           26 TSIYLDGTPQGVMLKNP--------ICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIE----------   87 (238)
Q Consensus        26 ~~~~~~~~~~g~~~~~~--------~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~----------   87 (238)
                      +++..+...+||||..|        .|...|..|...++.||+|++||..+. .++++++||...+.+..          
T Consensus        96 ~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~-~G~~~i~Afr~~~~~~~~~~~~~~~~~  174 (306)
T 4b4t_V           96 KQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSV-KGKVVIDAFRLIDTGALINNLEPRQTT  174 (306)
T ss_dssp             HHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSS-SCSSCEEEEECCHHHHHHCCCCCSCC-
T ss_pred             HHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCC-CCceeeeEEEecCccccccccCccccc
Confidence            34556778899997332        455556667778999999999997543 57899999998764310          


Q ss_pred             ---C-----------c-cceeeEeeceeeeccchhHHHHHHHhhhCCCCCCChhhhhHhhHHHHHHHHHHHHHHHHHHHH
Q 026489           88 ---G-----------I-PQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHH  152 (238)
Q Consensus        88 ---g-----------~-~~~~F~~ip~~I~t~EaErIgVd~l~~~~~~~~~~~~~~l~~~l~~~~~al~~L~~rL~~i~~  152 (238)
                         |           . ....|.++++++...+.|+..++.+.+..-.    ..-.+.+-......+.+.+.++++.+.+
T Consensus       175 s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~----~~l~~~~~~~~~~~~~~~i~~m~~~~~~  250 (306)
T 4b4t_V          175 SNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQ----SGLKMYDYEEKEESNLAATKSMVKIAEQ  250 (306)
T ss_dssp             ---------------------CEEECSCCCCCSSCTHHHHHHHHC--------------CHHHHHHHHHHHHHHSSCHHH
T ss_pred             ccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccc----cccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence               0           0 1256999999999999999999999985322    1112334466778888999999999999


Q ss_pred             HHHHhhcCCCCCChHHHHHHHHHHhcCCCCCh-----HHHHHHHHHhhch
Q 026489          153 YLVAMQKGEIPCENSLLRQVSSLLRRLPAIES-----EKFQDDFLMEYND  197 (238)
Q Consensus       153 YL~~V~~G~~~~d~~IlR~l~~l~~~lP~~~~-----~~f~~~~~~~~~D  197 (238)
                      |.+.|.+|+...+.++.      ...+|+.++     +.++..++++..|
T Consensus       251 y~k~v~~e~~~~~~~l~------~~~vgk~dp~~~l~~~~~~l~~~ni~~  294 (306)
T 4b4t_V          251 YSKRIEEEKELTEEELK------TRYVGRQDPKKHLSETADETLENNIVS  294 (306)
T ss_dssp             HHHHHHHHHHHHHHHHH------HTCSCSSCCSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHccccCCHHHHH------hhccCccChHHHHHHHHHHHHHHHHHH
Confidence            99999998866666654      467888876     5567777766665

>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}

Probab=98.89  E-value=1.3e-10  Score=93.36  Aligned_cols=57  Identities=26%  Similarity=0.367  Sum_probs=42.8

Q ss_pred             ceeecCCeeecccc----CCCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEee
Q 026489           26 TSIYLDGTPQGVML----KNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESEL   83 (238)
Q Consensus        26 ~~~~~~~~~~g~~~----~~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~   83 (238)
                      ++|+++...+|||+    .++++..||++|+++|++||+|++||..+. .++||++||+++.
T Consensus        80 k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~-~g~Lp~~ay~sv~  140 (141)
T 4e0q_A           80 KQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSRS-VDHLPLKLFESLI  140 (141)
T ss_dssp             HHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCSCCC-CTTHHHHHHCC--
T ss_pred             HHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCCccC-CCeEEEEEEEEEc
Confidence            56777888888887    356888999999999999999999998763 3579999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00