Citrus Sinensis ID: 026495

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKGGSSNKTCD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEEcccccccEEEEccccccHHHHHHHccccccccccccccccccccccEEEccccccccEEEEcccccHHHHHHHHHHccccccEEEcccccEEEEEEHHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccEEEcccccHHHHHHHHHHccccEEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEccccHHHEcEEccccccccccEccHccccEEEEccccccEEEEEEcccccccHHcccHHHHHccccccccccccccccEEHHcccccccEEEEcccccHHHHHHHHHHccccccEEEcccccEEEEEEccHHHHHHHccccccccHHHcccccHHcccHHHHHHHHHHHHcccHHHHcccccEEEcccccHHHHHHHHHHccccccEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgrtsfalqlpclllsrpgcrvfSVLATSSDRVSALRRSSAvfasgtltansaapssgvytvgdfmttkeelhvvkptttVDEALEILVEKRitgfpvidddwklvglvsdydllaldsisgsgradnsmfpevdsTWKTFNEVQKLLSKtngkmvgdlmtpapvvvRETTNLEDAARLLLETKyrrlpvvdadgwnyhkrkcskggssnktcd
Flexible Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVfasgtltansaapssgvYTVGDFMTTKEElhvvkptttvDEALEILVEKritgfpvidddWKLVGLVSDYDLLALDSisgsgradnSMFPEVDSTWKTFNEVQKLLsktngkmvgdlMTPAPVVVRETTNLEDAARLLletkyrrlpvvdadgwnyhkrkcskggssnktcd
Low Complexity Region (SEG)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKGGSSNKTCD
Disordered region (IsUnstruct)
**************************TSFALQLPCLLLSRPGCRVFSVLATSSDRVSAL****AVFASGTL********SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG********FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHK**************
Disordered Region (DISOPRED)
*********I***********************************************************************VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYH***************
Disordered Region (DISEMBL)
MDSIVLPHSISVARLR*********RTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKR*************
Disordered Region (DISPRO)
*DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVS**RRSSAVFASGTLTANSA*****VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKR*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKGGSSNKTCD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
O23193	236	CBS domain-containing pro	yes	no	0.654	0.656	0.828	4e-72
Q9C5D0	238	CBS domain-containing pro	no	no	0.670	0.668	0.688	4e-62
Q9UY49	485	Inosine-5'-monophosphate	yes	no	0.383	0.187	0.277	4e-06
Q58821	168	Uncharacterized protein M	yes	no	0.552	0.779	0.258	5e-06
O58045	486	Inosine-5'-monophosphate	yes	no	0.383	0.187	0.277	6e-06
O67820	490	Inosine-5'-monophosphate	yes	no	0.388	0.187	0.297	7e-06
P42851	485	Inosine-5'-monophosphate	yes	no	0.383	0.187	0.253	2e-05
P65167	529	Inosine-5'-monophosphate	yes	no	0.371	0.166	0.289	0.0002
P65168	529	Inosine-5'-monophosphate	yes	no	0.371	0.166	0.289	0.0002
Q58622	280	Uncharacterized protein M	no	no	0.400	0.339	0.243	0.0007

>sp|O23193|CBSX1_ARATH CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2

 Score =  271 bits (692), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 130/157 (82%), Positives = 144/157 (91%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
           S++  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPV
Sbjct: 54  SASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPV 113

Query: 122 IDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGD 181
           ID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VGD
Sbjct: 114 IDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGD 173

Query: 182 LMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           LMTPAP+VV E TNLEDAA++LLETKYRRLPVVD+DG
Sbjct: 174 LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDG 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5D0|CBSX2_ARATH CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1

 Score =  238 bits (606), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 117/170 (68%), Positives = 142/170 (83%), Gaps = 11/170 (6%)

Query: 60  RRSSAVFASGTLTANSAAPSS-----------GVYTVGDFMTTKEELHVVKPTTTVDEAL 108
           RRSS    S T++A  AAP+S           G YTVGDFMT ++ LHVVKP+T+VD+AL
Sbjct: 43  RRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDAL 102

Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 168
           E+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++FP+VDSTWKTFNE+Q
Sbjct: 103 ELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQ 162

Query: 169 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           KL+SKT GK+VGDLMTP+P+VVR++TNLEDAARLLLETK+RRLPVVDADG
Sbjct: 163 KLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADG 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UY49|IMDH_PYRAB Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=guaB PE=3 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 35/126 (27%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           E++  + P  TVD AL ++ +  I G PV++++ K+VG++S  D+ A +           
Sbjct: 101 EDVITISPEETVDFALFLMEKHDIDGLPVVENE-KVVGIISKKDIAARE----------- 148

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                  GK+V +LMT   + V E   +E+A ++++E +  RLP
Sbjct: 149 -----------------------GKLVKELMTKDVITVPENIEVEEALKIMIENRIDRLP 185

Query: 213 VVDADG 218
           VVD +G
Sbjct: 186 VVDKEG 191

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q58821|Y1426_METJA Uncharacterized protein MJ1426 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1426 PE=4 SV=1

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 12/143 (8%)

Query: 86  GDFMTTKEELH---VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           G+ M  K+ +    VV     + + + +  + +I+G PV++ D KLVG++S+ D++   +
Sbjct: 12  GEIMLIKDIMKKPIVVYEDNDLIDVIRLFRKNKISGAPVLNKDGKLVGIISESDIVK--T 69

Query: 143 ISGSGRADNSMFPE----VDSTWKTFNEVQKLLSKTNGKM---VGDLMTPAPVVVRETTN 195
           I       N + P     ++   KT  ++++ +      +   V D+MT   +V +    
Sbjct: 70  IVTHNEDLNLILPSPLDLIELPLKTALKIEEFMEDLKNALKTKVRDVMTRKVIVAKPDMT 129

Query: 196 LEDAARLLLETKYRRLPVVDADG 218
           + DAA+L+++   +RLPVVD +G
Sbjct: 130 INDAAKLMVKNNIKRLPVVDDEG 152

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O58045|IMDH_PYRHO Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=guaB PE=1 SV=1

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 35/126 (27%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           E++  + P  TVD AL ++ +  I G PV++D+ K+VG+++  D+ A +           
Sbjct: 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDIAARE----------- 148

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                  GK+V +LMT   + V E+  +E+A ++++E +  RLP
Sbjct: 149 -----------------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLP 185

Query: 213 VVDADG 218
           VVD  G
Sbjct: 186 VVDERG 191

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|O67820|IMDH_AQUAE Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=guaB PE=3 SV=1

 Score = 50.8 bits (120), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 29/121 (23%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           VKP T V EAL+I+ + +I+G PV+D++ KL+G++++ DL  +              PE 
Sbjct: 103 VKPDTRVKEALDIMAKYKISGVPVVDEERKLIGILTNRDLRFIK-------------PED 149

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
            S       V + ++K N       +  AP    E   L++A  +  + K  +LP+VD +
Sbjct: 150 YS-----KPVSEFMTKEN-------LITAP----EGITLDEAEEIFRKYKIEKLPIVDKE 193

Query: 218 G 218
           G
Sbjct: 194 G 194

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P42851|IMDH_PYRFU Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=guaB PE=3 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 35/126 (27%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           E++  + P  T+D AL ++ +  I G PV+++D ++VG+++  D+ A +           
Sbjct: 101 EDVITIAPDETIDYALFLMEKHGIDGLPVVEED-RVVGIITKKDIAARE----------- 148

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                  G+ V +LMT   + V E+ ++E+A ++++E +  RLP
Sbjct: 149 -----------------------GRTVKELMTREVITVPESVDVEEALKIMMENRIDRLP 185

Query: 213 VVDADG 218
           VV+ DG
Sbjct: 186 VVNEDG 191

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P65167|IMDH_MYCTU Inosine-5'-monophosphate dehydrogenase OS=Mycobacterium tuberculosis GN=guaB PE=1 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 33/121 (27%)

Query: 99  KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158
           +P  T+ +   +    RI+G PV+DDD  LVG++++ D                M  EVD
Sbjct: 137 RPDNTLAQVDALCARFRISGLPVVDDDGALVGIITNRD----------------MRFEVD 180

Query: 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVV-VRETTNLEDAARLLLETKYRRLPVVDAD 217
            +                K V ++MT AP++  +E  +   A  LL   K  +LPVVD  
Sbjct: 181 QS----------------KQVAEVMTKAPLITAQEGVSASAALGLLRRNKIEKLPVVDGR 224

Query: 218 G 218
           G
Sbjct: 225 G 225

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P65168|IMDH_MYCBO Inosine-5'-monophosphate dehydrogenase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=guaB PE=3 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 33/121 (27%)

Query: 99  KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158
           +P  T+ +   +    RI+G PV+DDD  LVG++++ D                M  EVD
Sbjct: 137 RPDNTLAQVDALCARFRISGLPVVDDDGALVGIITNRD----------------MRFEVD 180

Query: 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVV-VRETTNLEDAARLLLETKYRRLPVVDAD 217
            +                K V ++MT AP++  +E  +   A  LL   K  +LPVVD  
Sbjct: 181 QS----------------KQVAEVMTKAPLITAQEGVSASAALGLLRRNKIEKLPVVDGR 224

Query: 218 G 218
           G
Sbjct: 225 G 225

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Mycobacterium bovis (taxid: 1765)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q58622|Y1225_METJA Uncharacterized protein MJ1225 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1225 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 28/123 (22%)

Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 151
           +E +  +K    +DEA+E  + K + G P+++D+ +L+ L+++ D++             
Sbjct: 91  EENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI------------R 138

Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 211
           ++  ++D      NEV           + D +T   +V      L+D AR ++   +RRL
Sbjct: 139 ALLDKIDE-----NEV-----------IDDYITRDVIVATPGERLKDVARTMVRNGFRRL 182

Query: 212 PVV 214
           PVV
Sbjct: 183 PVV 185

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
225438783	246	PREDICTED: CBS domain-containing protein	0.919	0.886	0.723	5e-83
317106695	236	JHL03K20.5 [Jatropha curcas]	0.873	0.877	0.755	9e-82
255587643	239	conserved hypothetical protein [Ricinus	0.856	0.849	0.742	3e-77
147802944	288	hypothetical protein VITISV_021555 [Viti	0.919	0.756	0.608	3e-76
224081731	208	predicted protein [Populus trichocarpa]	0.755	0.860	0.767	1e-73
449443418	235	PREDICTED: CBS domain-containing protein	0.827	0.834	0.677	1e-71
449525190	235	PREDICTED: CBS domain-containing protein	0.827	0.834	0.677	1e-71
15234564	236	cystathionine beta-synthase domain-conta	0.654	0.656	0.828	2e-70
356541776	228	PREDICTED: CBS domain-containing protein	0.632	0.657	0.842	3e-70
297802232	236	hypothetical protein ARALYDRAFT_490898 [	0.654	0.656	0.821	9e-70

>gi|225438783|ref|XP_002283079.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Vitis vinifera]

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 160/221 (72%), Positives = 183/221 (82%), Gaps = 3/221 (1%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+LP +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILLPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
            +RRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EALEILVE RIT
Sbjct: 61  GIRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRIT 120

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGK 177
           GFPVIDDDWKLVGLVSDYDLLALDSISG G  D  MFPEVDSTWKTFNE+QKLLSKTNGK
Sbjct: 121 GFPVIDDDWKLVGLVSDYDLLALDSISGGGLTDTIMFPEVDSTWKTFNELQKLLSKTNGK 180

Query: 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           +VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD+DG
Sbjct: 181 VVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDSDG 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106695|dbj|BAJ53196.1| JHL03K20.5 [Jatropha curcas]

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 167/221 (75%), Positives = 180/221 (81%), Gaps = 14/221 (6%)

Query: 1   MDSIV---LPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVS 57
           MDSI+   L H + + RLRA     TS   SFA QLPCLL SRPG R+  + A     +S
Sbjct: 1   MDSILHQELLH-LPITRLRATA---TSPIVSFAQQLPCLLSSRPGRRLLPLSA-----IS 51

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
             RRSSA+ ASG   A+S  P SGVYTVGDFMT KE+L VVKPTTTVDEAL+ LVE RIT
Sbjct: 52  HPRRSSAIAASGAFVASS--PKSGVYTVGDFMTRKEDLQVVKPTTTVDEALQTLVEHRIT 109

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGK 177
           GFPVIDDDWKLVGLVSDYDLLALDSISG GR DNSMFPEVDSTWKTFNEVQKLLSKTNGK
Sbjct: 110 GFPVIDDDWKLVGLVSDYDLLALDSISGGGRTDNSMFPEVDSTWKTFNEVQKLLSKTNGK 169

Query: 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           +VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD++G
Sbjct: 170 LVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDSEG 210

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587643|ref|XP_002534340.1| conserved hypothetical protein [Ricinus communis] gi|223525462|gb|EEF28042.1| conserved hypothetical protein [Ricinus communis]

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 159/214 (74%), Positives = 170/214 (79%), Gaps = 11/214 (5%)

Query: 5   VLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           +L H ++  R  A P        SFA QLPCLL S    R    L+     +S  RRSS 
Sbjct: 11  LLNHPLTRLRSTASPT-----VVSFAHQLPCLLSSATVSRRLFHLSV----ISWPRRSST 61

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
           + A+GTL ANS  P SGVYTVGDFMT KE+L VVKPTTTVDEAL+ LVE RITGFPVIDD
Sbjct: 62  ISATGTLMANS--PKSGVYTVGDFMTRKEDLCVVKPTTTVDEALQTLVEHRITGFPVIDD 119

Query: 125 DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT 184
           DWKLVGLVSDYDLLALDSISG GR DNSMFPEVDSTWKTFNEVQKLLSKTNGK+VGDLMT
Sbjct: 120 DWKLVGLVSDYDLLALDSISGGGRTDNSMFPEVDSTWKTFNEVQKLLSKTNGKLVGDLMT 179

Query: 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           PAPVVVRETTNLEDAARLLLETKYRRLPVVDA+G
Sbjct: 180 PAPVVVRETTNLEDAARLLLETKYRRLPVVDAEG 213

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802944|emb|CAN64036.1| hypothetical protein VITISV_021555 [Vitis vinifera]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 160/263 (60%), Positives = 182/263 (69%), Gaps = 45/263 (17%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+ P +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILPPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
            LRRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EALEILVE RIT
Sbjct: 61  GLRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRIT 120

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSI---------------------------------- 143
           GFPVIDDDWKLVGLVSDYDLLALDSI                                  
Sbjct: 121 GFPVIDDDWKLVGLVSDYDLLALDSISELPQLKHVPEDISGKSLVLHGSLERQMKSLFLT 180

Query: 144 --------SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTN 195
                   SG G  D  MFPEVDSTWKTFNE+QKLLSKTNGK+VGDLMTPAPVVVRETTN
Sbjct: 181 AVDVLIFGSGGGLTDTIMFPEVDSTWKTFNELQKLLSKTNGKVVGDLMTPAPVVVRETTN 240

Query: 196 LEDAARLLLETKYRRLPVVDADG 218
           LEDAARLLLETKYRRLPVVD+DG
Sbjct: 241 LEDAARLLLETKYRRLPVVDSDG 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081731|ref|XP_002306482.1| predicted protein [Populus trichocarpa] gi|222855931|gb|EEE93478.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 145/189 (76%), Positives = 160/189 (84%), Gaps = 10/189 (5%)

Query: 33  LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFA---SGTLTANSAAPSSGVYTVGDFM 89
           +PCLL S PG ++ S+       +S  RRS ++ A   SGTL ANS  P SGVYTVGDFM
Sbjct: 1   MPCLLFSTPGRKLVSL-----SSISWPRRSPSLIAAASSGTLMANS--PKSGVYTVGDFM 53

Query: 90  TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRA 149
           T KE+LHVVKPTTTV+EALE LVE+RITGFPVIDDDWKLVGLVSDYDLLALDSISG GR 
Sbjct: 54  TRKEDLHVVKPTTTVNEALETLVERRITGFPVIDDDWKLVGLVSDYDLLALDSISGGGRT 113

Query: 150 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR 209
           + +MFPEVDSTWKTFNEVQ LL+KTNGK+VGDLMTPAPVVVRETTNLED+ RLLLETKYR
Sbjct: 114 ETNMFPEVDSTWKTFNEVQMLLNKTNGKVVGDLMTPAPVVVRETTNLEDSVRLLLETKYR 173

Query: 210 RLPVVDADG 218
           RLPVVDADG
Sbjct: 174 RLPVVDADG 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443418|ref|XP_004139474.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 145/214 (67%), Positives = 166/214 (77%), Gaps = 18/214 (8%)

Query: 9   SISVARLRAPPAGRTSGRTSFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           S+S+A  RA          SF++Q     PC    RP   +    A+ +     LR+S++
Sbjct: 10  SLSLAPFRA---------KSFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTS 55

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
           + ASGTL ANS    +GVY VGDFMT KEELHVVKPTT+VDEALEILVEKRITGFPVIDD
Sbjct: 56  IAASGTLMANSVPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDD 115

Query: 125 DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT 184
           +WKLVG+VSDYDLLALDSISG GR D SMFPEVDS+WKTFNEVQ+LLSKTNGK+VGDLMT
Sbjct: 116 NWKLVGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQRLLSKTNGKVVGDLMT 175

Query: 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
            AP+VVRE T+LED ARLLL+TKYRRLPVVDADG
Sbjct: 176 TAPLVVREITDLEDVARLLLQTKYRRLPVVDADG 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525190|ref|XP_004169601.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 145/214 (67%), Positives = 166/214 (77%), Gaps = 18/214 (8%)

Query: 9   SISVARLRAPPAGRTSGRTSFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           S+S+A  RA          SF++Q     PC    RP   +    A+ +     LR+S++
Sbjct: 10  SLSLAPFRA---------KSFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTS 55

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
           + ASGTL ANS    +GVY VGDFMT KEELHVVKPTT+VDEALEILVEKRITGFPVIDD
Sbjct: 56  IAASGTLMANSLPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDD 115

Query: 125 DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT 184
           +WKLVG+VSDYDLLALDSISG GR D SMFPEVDS+WKTFNEVQ+LLSKTNGK+VGDLMT
Sbjct: 116 NWKLVGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQRLLSKTNGKVVGDLMT 175

Query: 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
            AP+VVRE T+LED ARLLL+TKYRRLPVVDADG
Sbjct: 176 TAPLVVREITDLEDVARLLLQTKYRRLPVVDADG 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234564|ref|NP_195409.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana] gi|75219197|sp|O23193.2|CBSX1_ARATH RecName: Full=CBS domain-containing protein CBSX1, chloroplastic; AltName: Full=CBS domain-containing protein 2; Short=AtCDCP2; AltName: Full=Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2; Short=AtLEJ2; Flags: Precursor gi|4006881|emb|CAB16799.1| putative protein [Arabidopsis thaliana] gi|7270640|emb|CAB80357.1| putative protein [Arabidopsis thaliana] gi|21537376|gb|AAM61717.1| unknown [Arabidopsis thaliana] gi|28392900|gb|AAO41886.1| unknown protein [Arabidopsis thaliana] gi|28827758|gb|AAO50723.1| unknown protein [Arabidopsis thaliana] gi|332661316|gb|AEE86716.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 130/157 (82%), Positives = 144/157 (91%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
           S++  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPV
Sbjct: 54  SASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPV 113

Query: 122 IDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGD 181
           ID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VGD
Sbjct: 114 IDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGD 173

Query: 182 LMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           LMTPAP+VV E TNLEDAA++LLETKYRRLPVVD+DG
Sbjct: 174 LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDG 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541776|ref|XP_003539349.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Glycine max] gi|255632210|gb|ACU16463.1| unknown [Glycine max]

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/152 (84%), Positives = 142/152 (93%)

Query: 67  ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           A+ TLTAN  +P SG+YTVGDFMT KE+LHVVKPTT+VDEALEILVE RITGFPVIDD+W
Sbjct: 51  AANTLTANDVSPRSGLYTVGDFMTKKEDLHVVKPTTSVDEALEILVENRITGFPVIDDNW 110

Query: 127 KLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA 186
           KLVG+VSDYDLLALDSISG G  DN+MFPEVDSTWKTFNEVQKLLSKTNGK++G+LMT A
Sbjct: 111 KLVGVVSDYDLLALDSISGHGLKDNNMFPEVDSTWKTFNEVQKLLSKTNGKLIGELMTTA 170

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           P+VVRETTNLEDAARLLLETK+RRLPVVDA+G
Sbjct: 171 PMVVRETTNLEDAARLLLETKFRRLPVVDAEG 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802232|ref|XP_002869000.1| hypothetical protein ARALYDRAFT_490898 [Arabidopsis lyrata subsp. lyrata] gi|297314836|gb|EFH45259.1| hypothetical protein ARALYDRAFT_490898 [Arabidopsis lyrata subsp. lyrata]

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 129/157 (82%), Positives = 144/157 (91%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
           S++  A  TL  NS++P SGVYTVG+FMT K++LHVVKPTTTVDEALE+LVE RITGFPV
Sbjct: 54  SASSAAGSTLMKNSSSPRSGVYTVGEFMTKKDDLHVVKPTTTVDEALELLVENRITGFPV 113

Query: 122 IDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGD 181
           ID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VGD
Sbjct: 114 IDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGD 173

Query: 182 LMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           LMTPAP+VV E TNLEDAA++LLETKYRRLPVVD+DG
Sbjct: 174 LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDG 210

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2114970	236	LEJ2 "AT4G36910" [Arabidopsis	0.886	0.889	0.674	1.3e-68
TAIR|locus:2124276	238	LEJ1 "AT4G34120" [Arabidopsis	0.729	0.726	0.659	1.7e-57
UNIPROTKB|Q74C73	149	GSU1801 "CBS domain pair-conta	0.527	0.838	0.311	2.4e-07
TIGR_CMR|GSU_1801	149	GSU_1801 "CBS domain protein"	0.527	0.838	0.311	2.4e-07
UNIPROTKB|Q3AFN9	210	acuB "Acetoin utilization prot	0.210	0.238	0.547	9.9e-07
TIGR_CMR|CHY_0173	210	CHY_0173 "acetoin utilization	0.210	0.238	0.547	9.9e-07
UNIPROTKB|Q3AFS5	271	CHY_0137 "CBS/GGDEF domain pro	0.206	0.180	0.408	1.1e-05
TIGR_CMR|CHY_0137	271	CHY_0137 "CBS/GGDEF domain pro	0.206	0.180	0.408	1.1e-05
DICTYBASE|DDB_G0289609	145	DDB_G0289609 "CBS (cystathioni	0.210	0.344	0.411	2.3e-05
UNIPROTKB|Q74BN1	144	GSU2010 "CBS domain pair-conta	0.206	0.340	0.410	9.2e-05

TAIR|locus:2114970 LEJ2 "AT4G36910" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 147/218 (67%), Positives = 169/218 (77%)

Query:     1 MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALR 60
             MD+++    +S   LRA     +S  +S  L LP  L  +P C  F+   +   +     
Sbjct:     1 MDAVLYSVPLSFTPLRA-----SSSPSSPYLLLPRFLSVQP-CHKFTFSRSFPSKSRIPS 54

Query:    61 RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP 120
              SSA  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFP
Sbjct:    55 ASSA--AGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFP 112

Query:   121 VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVG 180
             VID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VG
Sbjct:   113 VIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVG 172

Query:   181 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
             DLMTPAP+VV E TNLEDAA++LLETKYRRLPVVD+DG
Sbjct:   173 DLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDG 210

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

TAIR|locus:2124276 LEJ1 "AT4G34120" [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 118/179 (65%), Positives = 150/179 (83%)

Query:    46 FSVLATSSDRVSALRRSS----AVFAS-GTLTANSAAPS-SGVYTVGDFMTTKEELHVVK 99
             FS+L  S+ R S+    S    A FA+  ++  N++ P+ +G YTVGDFMT ++ LHVVK
Sbjct:    34 FSLLPLSNRRRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVK 93

Query:   100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159
             P+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++FP+VDS
Sbjct:    94 PSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS 153

Query:   160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
             TWKTFNE+QKL+SKT GK+VGDLMTP+P+VVR++TNLEDAARLLLETK+RRLPVVDADG
Sbjct:   154 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADG 212

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|Q74C73 GSU1801 "CBS domain pair-containing protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 121 (47.7 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 42/135 (31%), Positives = 63/135 (46%)

Query:    84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
             TV D MTT   +   +  TT+ E  E+  + RI   PV+D+   L G+V++ DL+  D  
Sbjct:     3 TVRDIMTTN--VVTARRETTIRELAELFSKYRIGSIPVVDEAGNLAGIVTESDLIEQDK- 59

Query:   144 SGSGRADNSMFPEV---DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAA 200
             S       S+F  V   +S  K   E+QK+     G+  GD+ T     V   T +   A
Sbjct:    60 SLHIPTVISLFDWVIYLESAKKFEREIQKV----TGQTAGDIYTTEVESVTPETPVSTVA 115

Query:   201 RLLLETKYRRLPVVD 215
              ++   K   LPVV+
Sbjct:   116 DIMANKKLHTLPVVE 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1801 GSU_1801 "CBS domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 121 (47.7 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 42/135 (31%), Positives = 63/135 (46%)

Query:    84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
             TV D MTT   +   +  TT+ E  E+  + RI   PV+D+   L G+V++ DL+  D  
Sbjct:     3 TVRDIMTTN--VVTARRETTIRELAELFSKYRIGSIPVVDEAGNLAGIVTESDLIEQDK- 59

Query:   144 SGSGRADNSMFPEV---DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAA 200
             S       S+F  V   +S  K   E+QK+     G+  GD+ T     V   T +   A
Sbjct:    60 SLHIPTVISLFDWVIYLESAKKFEREIQKV----TGQTAGDIYTTEVESVTPETPVSTVA 115

Query:   201 RLLLETKYRRLPVVD 215
              ++   K   LPVV+
Sbjct:   116 DIMANKKLHTLPVVE 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AFN9 acuB "Acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 106 (42.4 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query:    85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V D MT   EL  VK T T+ EA+    EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMT--RELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TIGR_CMR|CHY_0173 CHY_0173 "acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 106 (42.4 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query:    85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V D MT   EL  VK T T+ EA+    EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMT--RELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

UNIPROTKB|Q3AFS5 CHY_0137 "CBS/GGDEF domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 90 (36.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 20/49 (40%), Positives = 27/49 (55%)

Query:   170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
             L+     ++V D MT  PVV+ E   L DA + +LE    RLPV+D  G
Sbjct:    54 LIFYPENRLVIDAMTEEPVVIEEKAYLFDAYQKMLENNIERLPVIDESG 102

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0137 CHY_0137 "CBS/GGDEF domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 90 (36.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 20/49 (40%), Positives = 27/49 (55%)

Query:   170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
             L+     ++V D MT  PVV+ E   L DA + +LE    RLPV+D  G
Sbjct:    54 LIFYPENRLVIDAMTEEPVVIEEKAYLFDAYQKMLENNIERLPVIDESG 102

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0289609 DDB_G0289609 "CBS (cystathionine-beta-synthase) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 85 (35.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query:    93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDS 142
             + L  +   TT+D AL+ L    I   PV+D+D  L G+++D DL LA DS
Sbjct:    11 KSLFTINLDTTLDVALKSLNANSIHRLPVVDNDGNLKGIITDRDLRLATDS 61

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q74BN1 GSU2010 "CBS domain pair-containing protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 78 (32.5 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query:   160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
             TW    EV  +LSKT+   V + M P P  V+  T+L +AA+LL + K   + VVD
Sbjct:    66 TW----EVHYILSKTS---VTEAMNPKPYKVKPDTDLTEAAQLLHDRKLNGVLVVD 114

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23193	CBSX1_ARATH	No assigned EC number	0.8280	0.6540	0.6567	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019540001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (213 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023053001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (430 aa)	•						•		0.707
	GSVIVG00036526001	RecName- Full=N-acetyl-gamma-glutamyl-phosphate reductase; EC=1.2.1.38; (398 aa)	•								0.556
	GSVIVG00000640001	RecName- Full=DNA topoisomerase 2; EC=5.99.1.3; (661 aa)	•								0.553
	GSVIVG00025551001	RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa)							•		0.474

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	8e-22
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-21
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	5e-20
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	1e-17
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	1e-16
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	2e-16
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	2e-16
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	8e-16
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	1e-15
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	2e-15
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	4e-15
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-13
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	2e-13
pfam00571	57	pfam00571, CBS, CBS domain	2e-13
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	2e-13
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	3e-13
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	7e-13
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	6e-12
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	2e-11
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	2e-11
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	3e-11
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	4e-11
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	9e-11
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	9e-11
pfam00571	57	pfam00571, CBS, CBS domain	2e-10
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	2e-10
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	3e-10
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	4e-10
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-09
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	2e-09
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	2e-09
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	2e-09
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	5e-09
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	6e-09
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	8e-09
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	9e-09
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	1e-08
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	1e-08
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	2e-08
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	3e-08
COG2239	451	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains	5e-08
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	8e-08
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	1e-07
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	1e-07
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	1e-07
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	2e-07
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	2e-07
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	2e-07
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	3e-07
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	3e-07
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	3e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	4e-07
cd04598	119	cd04598, CBS_pair_GGDEF_assoc, This cd contains tw	4e-07
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	5e-07
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	6e-07
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	7e-07
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-06
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	1e-06
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	1e-06
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	1e-06
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	2e-06
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	3e-06
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	3e-06
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	3e-06
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	3e-06
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	4e-06
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	4e-06
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	5e-06
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	6e-06
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	7e-06
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	8e-06
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	2e-05
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	2e-05
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	3e-05
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	4e-05
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	4e-05
cd04614	96	cd04614, CBS_pair_1, The CBS domain, named after h	4e-05
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	7e-05
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	7e-05
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	7e-05
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	1e-04
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	1e-04
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	1e-04
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	1e-04
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	1e-04
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	1e-04
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	1e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	2e-04
cd04608	124	cd04608, CBS_pair_PALP_assoc, This cd contains two	2e-04
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	2e-04
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	2e-04
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	2e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	3e-04
cd04639	111	cd04639, CBS_pair_26, The CBS domain, named after	3e-04
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	3e-04
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	3e-04
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	3e-04
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	4e-04
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	4e-04
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	5e-04
cd04594	104	cd04594, CBS_pair_EriC_assoc_archaea, This cd cont	5e-04
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	5e-04
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	6e-04
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	6e-04
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	6e-04
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	7e-04
cd04617	118	cd04617, CBS_pair_4, The CBS domain, named after h	7e-04
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	7e-04
cd04582	106	cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contain	8e-04
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.001
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	0.001
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	0.001
PRK01862	574	PRK01862, PRK01862, putative voltage-gated ClC-typ	0.001
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	0.002
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	0.002
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	0.002
PRK11543	321	PRK11543, gutQ, D-arabinose 5-phosphate isomerase;	0.002
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	0.003
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	0.004
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	0.004
PLN02274	505	PLN02274, PLN02274, inosine-5'-monophosphate dehyd	0.004

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 86.9 bits (216), Expect = 8e-22
 Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 5/121 (4%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V P T+V EA  ++++  I+G PV+DDD +LVG+VS+ DLL    + G+ R        
Sbjct: 6   TVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAEL-GTERRRARWLDL 64

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                    E+     +++G+ V D+MT   V V E T L + A L+ E + +R+PVV  
Sbjct: 65  ----LAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG 120

Query: 217 D 217
            
Sbjct: 121 G 121

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 85.6 bits (212), Expect = 2e-21
 Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 27/126 (21%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
            ++  V P  TV EAL +++E  I+G PV+DDD +LVG+V++ DLL   +  G       
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG------- 53

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                     VGD+MT   V V   T+LE+AA L+LE   RRLP
Sbjct: 54  --------------------LDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLP 93

Query: 213 VVDADG 218
           VVD +G
Sbjct: 94  VVDDEG 99

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 82.4 bits (204), Expect = 5e-20
 Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFP 155
            VK   T+ + +EIL+  +I+G PV+D++ ++VG+VS+ DL  +  I  G G        
Sbjct: 5   TVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDL--IRKIYKGKGLFY-VTLL 61

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
                +   ++++KLL K     V ++MT   + V E T +ED AR++ +   +RLPVVD
Sbjct: 62  YSV-IFLDESKIKKLLGKK----VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD 116

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 75.6 bits (186), Expect = 1e-17
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 32/137 (23%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V D MT   ++  VKP T+V +AL ++ E  ++  PV+DD  KLVG++++ D+  L +++
Sbjct: 1   VKDIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDI--LRALA 55

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
             G+                              V ++MT   V V   T LE+A  L++
Sbjct: 56  AGGKRLLP--------------------------VKEVMTKPVVTVDPDTPLEEALELMV 89

Query: 205 E-TKYRRLPVVDADGWN 220
           E  K RRLPVVD DG  
Sbjct: 90  ERHKIRRLPVVDDDGGK 106

Length = 117

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 73.0 bits (180), Expect = 1e-16
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 18/120 (15%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           + PTTT+ EALE++ E +I   PV+D++ +LVG+V+D DL           A  S F   
Sbjct: 6   ITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR---------DASPSPFTT- 55

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                       LL K     V ++MT   + V     +E+AA L+ E +   LPVV+  
Sbjct: 56  -----LSEHELYLLLKMP---VKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVEDG 107

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 72.5 bits (179), Expect = 2e-16
 Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 33/122 (27%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V P  TV EALE++ E  I+G PV+DDD KLVG+V++ DL     +              
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETDLDKP----------- 55

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRE-TTNLEDAARLLLETKYRRLPVVDA 216
                                V ++MTP  ++     T+LE+A  LL E K  +LPVVD 
Sbjct: 56  ---------------------VSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD 94

Query: 217 DG 218
           +G
Sbjct: 95  EG 96

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 72.8 bits (179), Expect = 2e-16
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 10/128 (7%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN----S 152
                 T+ +A  +L E +I+G PV+D   KLVG+VS+ D+L L  +     + N    S
Sbjct: 5   TCNADDTISDAARLLRENKISGAPVLDGG-KLVGIVSESDILKL--LVTHDPSGNLWLPS 61

Query: 153 MFPEVDSTWKTF---NEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR 209
               ++   + F    E ++ L+      V D+MT   + +    ++EDAA L++  K +
Sbjct: 62  PLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIK 121

Query: 210 RLPVVDAD 217
           RLPVV+  
Sbjct: 122 RLPVVEDG 129

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 70.7 bits (174), Expect = 8e-16
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 25/121 (20%)

Query: 95  LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 154
                P  +V EA+E L++ +I+G PV+DD+  LVG +S+ D L    +  S     S  
Sbjct: 3   PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLK--QLLES-----SYH 55

Query: 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 214
            +  +T                  V D+MT   + V    ++ D A+L+L+ K +R PVV
Sbjct: 56  CDGVAT------------------VRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVV 97

Query: 215 D 215
           D
Sbjct: 98  D 98

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 70.8 bits (174), Expect = 1e-15
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 18/125 (14%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
            +  +    ++ +A E++ E RI   PV+++D KLVGL++  DLL         RA  S 
Sbjct: 2   PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLL---------RAALSS 52

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
             +           ++ L+K     V ++M    + V   T L +AA +++E K   LPV
Sbjct: 53  LSDNG---------EESLTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPV 103

Query: 214 VDADG 218
           VD  G
Sbjct: 104 VDDKG 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 18/122 (14%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V P T++ EAL+++ E  I   PV+D   KLVG+V+D DL      S S      ++  
Sbjct: 5   TVTPDTSLMEALKLMKENSIRRLPVVDRG-KLVGIVTDRDLKL---ASPSKATTLDIW-- 58

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                    E+  LLSK     V D+MT  P+ V    ++E+AA L+LE K   LPVVD 
Sbjct: 59  ---------ELYYLLSKIK---VSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD 106

Query: 217 DG 218
            G
Sbjct: 107 QG 108

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 73.3 bits (181), Expect = 4e-15
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 33/122 (27%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V P TT+ EAL ++    I+G PV+D++ KLVG++++ D+                F E 
Sbjct: 100 VTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVR---------------F-ET 143

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVV-VRETTNLEDAARLLLETKYRRLPVVDA 216
           D            LS+     V ++MT   +V V E T LE+A  LL E +  +LPVVD 
Sbjct: 144 D------------LSQP----VSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD 187

Query: 217 DG 218
           +G
Sbjct: 188 NG 189

Length = 486

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 64.8 bits (159), Expect = 1e-13
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 26/124 (20%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
           ++  V+P  TV EA +++ EK I    V+DD  +LVG+ S+ D++    ++  G +    
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVR--KVALRGASALDT 59

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
                                    V ++MT   + V     +++A  L+ E ++R LPV
Sbjct: 60  ------------------------PVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPV 95

Query: 214 VDAD 217
           VD  
Sbjct: 96  VDGG 99

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 33/115 (28%)

Query: 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162
           T D+ LE+L E +++G PV+    +LVG+++  DLL                       +
Sbjct: 11  TRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-----------------------R 47

Query: 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
              E Q  L          LMT  P  V    ++++AA+L++E   RR+PVVD  
Sbjct: 48  NPEEEQLAL----------LMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDG 92

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 62.6 bits (153), Expect = 2e-13
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT    +  V P T+++EALE++ E  I+  PV+D+D KLVG+V+  DLL
Sbjct: 1   VKDIMTPD--VVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLL 52

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 29/125 (23%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
           ++  V    TVDE L ++  +R  G+PV+DD  +LVG+V    L  +  +   GR     
Sbjct: 2   DVVTVPVDLTVDEVLALMFGERHRGYPVVDDG-RLVGIV---TLADIRRVPAEGREAT-- 55

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
                                   +VGD+MT  PV       L DA + + E    RLPV
Sbjct: 56  -----------------------VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPV 92

Query: 214 VDADG 218
           VD  G
Sbjct: 93  VDDSG 97

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 27/122 (22%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            +   T ++E L+++       FPV+DDD +LVG+VS  D+  +            +F  
Sbjct: 5   TIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI------------LFDP 52

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                     +  L+      +  D+MT  PVVV    +LEDA +   ++ Y +LPVVD 
Sbjct: 53  ---------SLYDLV------VASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD 97

Query: 217 DG 218
           D 
Sbjct: 98  DP 99

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 63.1 bits (154), Expect = 7e-13
 Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 17/125 (13%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
           ++  V P T+++EA  +L   RI   PV+D D +LVG+V+  DL  L      GR     
Sbjct: 3   DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDL--LRHARPDGRRPLRG 60

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
                   +T               VGD+M+P  V VR  T + +   LL +  +  +PV
Sbjct: 61  RLRGRDKPET---------------VGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPV 105

Query: 214 VDADG 218
           VD D 
Sbjct: 106 VDEDR 110

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 60.4 bits (147), Expect = 6e-12
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDSISGSGRADNSMFP 155
            V PTT + EA +I+V       PV+D+   KLVG+++  D+L                 
Sbjct: 5   TVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKY--------------- 49

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
            +    K          +   + V  +MT   + +    +++DAA L+LE +   LPVVD
Sbjct: 50  -LGGGEKFNKIKTGNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVD 108

Query: 216 ADG 218
            DG
Sbjct: 109 DDG 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 27/122 (22%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V PTTTV EA +++ EKR++   V+D + KLVG+ +  D+                   
Sbjct: 5   TVSPTTTVQEAAKLMREKRVSCVLVMDGN-KLVGIFTSKDI------------------- 44

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                     V + L      +V  +MTP PV     T + +A  L+++ K+R LPVVD 
Sbjct: 45  ------ALRVVAQGLD-PESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK 97

Query: 217 DG 218
            G
Sbjct: 98  SG 99

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 27/122 (22%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V P  T+ EA  ++ E  +   PV ++D +LVG+V+D D+  + +++  GR  ++    
Sbjct: 5   TVSPDDTIREAARLMREHDVGALPVCEND-RLVGIVTDRDI-VVRAVA-EGRDPDTTT-- 59

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                                 VGD+MT   V V E  ++++AARL+ E + RRLPVVD 
Sbjct: 60  ----------------------VGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD 97

Query: 217 DG 218
           DG
Sbjct: 98  DG 99

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 31/128 (24%)

Query: 93  EELHVVKPTTTVDEALEILVEKR--ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 150
           + L +V P T++ +AL  +  K   +T   V+D+D +LVG+ +D DL          RA 
Sbjct: 2   DALPLVSPDTSLKDALLEMSRKGLGMTA--VVDEDGRLVGIFTDGDL---------RRA- 49

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR 210
                           ++K L       V D+MT  P  +       +A  L+ E K   
Sbjct: 50  ----------------LEKGLDILTLP-VADVMTRNPKTIDPDALAAEALELMEENKITA 92

Query: 211 LPVVDADG 218
           LPVVD +G
Sbjct: 93  LPVVDDNG 100

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.0 bits (141), Expect = 4e-11
 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 24/126 (19%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           EE+  V+ T T+  AL +L +   +  PV+D + K VG +S  D+L              
Sbjct: 1   EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL-------------- 46

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                   WK        L +     V D+M     V+ +  ++E+   LL++  +  LP
Sbjct: 47  --------WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQPF--LP 96

Query: 213 VVDADG 218
           VVD DG
Sbjct: 97  VVDDDG 102

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 60.4 bits (147), Expect = 9e-11
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 36/126 (28%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSM 153
            + P TTV + LE++  K I+G PV++D     KLVG+++  D+  +             
Sbjct: 92  TISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV------------- 138

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVV-VRETTNLEDAARLLLETKYRRLP 212
                              K  GK V ++MT   V+ V E  +LE+A ++L E +  +LP
Sbjct: 139 -------------------KDKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLP 179

Query: 213 VVDADG 218
           VVD +G
Sbjct: 180 VVDKNG 185

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 60.1 bits (146), Expect = 9e-11
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 34/136 (25%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V + M+ K  L  V+P  T+ EA ++  EK I G PV+DDD K+VG++           
Sbjct: 173 KVKNLMSKK--LITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGII----------- 218

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAARL 202
                              T +++ K ++  N    V D M    + + E  ++ DA RL
Sbjct: 219 -------------------TLSDIAKAIANGNLDAKVSDYMRKNVITINEDEDIYDAIRL 259

Query: 203 LLETKYRRLPVVDADG 218
           + +    RL V D++G
Sbjct: 260 MNKNNVGRLLVTDSNG 275

Length = 294

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 54.5 bits (132), Expect = 2e-10
 Identities = 21/40 (52%), Positives = 25/40 (62%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           V D+MTP  V V   T+LE+A  L+ E    RLPVVD DG
Sbjct: 1   VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDG 40

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 55.6 bits (135), Expect = 2e-10
 Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 38/127 (29%)

Query: 97  VVKPTTTVDEALEIL-----VEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 151
            V+   TV EALE L       + I    V+D++ +L+G+VS  DLL          AD 
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL---------LADP 51

Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 211
                                      V D+M    + V    + E+ ARL  +     L
Sbjct: 52  D------------------------TPVSDIMDTDVISVSADDDQEEVARLFEKYDLLAL 87

Query: 212 PVVDADG 218
           PVVD +G
Sbjct: 88  PVVDEEG 94

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V   MT    +  + P  ++ +A E+++EKR+ G PV+DDD KLVG+V++ DLL
Sbjct: 72  VRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 34/123 (27%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
             V P  TV + ++++ E    GFPV+D+  K+VG+VS  DLL  D              
Sbjct: 5   ITVSPDNTVKDVIKLIKETGHDGFPVVDNG-KVVGIVSARDLLGKDPD------------ 51

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
                                + V ++M+   VV     ++ DAAR++  T   +LPVVD
Sbjct: 52  ---------------------ETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVD 90

Query: 216 ADG 218
            + 
Sbjct: 91  ENN 93

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVGD MT   ++  V P T+++EA E+++E  I   PV+DD+ +LVG+V+  D+L
Sbjct: 59  TVGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V+    ++E  EI  + +     V++D+ +LVG++SD D L   S            P +
Sbjct: 6   VEMDDRLEEVREIFEKHKFHHLLVVEDN-ELVGVISDRDYLKAIS------------PFL 52

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
            +  +T  ++  L      +    +MT  P+ V   T +++A++LLLE     LPVVD +
Sbjct: 53  GTAGETEKDLATLN-----RRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDEN 107

Query: 218 G 218
           G
Sbjct: 108 G 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 18/123 (14%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           + +  V P   V  A  ++++  I+  PVI+   KLVG+V++ D+           A  S
Sbjct: 1   KPVITVSPDDRVSHARRLMLDHDISRLPVIEGG-KLVGIVTEKDI---------ADALRS 50

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
             P V               +     V D+MT   + +   T++ D A L+LE     LP
Sbjct: 51  FRPLVRDR--------HQERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLP 102

Query: 213 VVD 215
           VVD
Sbjct: 103 VVD 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDSISGSGRADN 151
           E++  V P  ++   ++ + +  +    V+DD+ K VG+++  DL  A    +  G    
Sbjct: 1   EDIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKK 60

Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 211
           S+  +  +  K +  V K +         D+MT   + V    ++ DAA+L+LE     L
Sbjct: 61  SIKMKRKAGQKRYRYV-KEVPLV----AEDIMTEEIITVSPNDDVVDAAKLMLEANISGL 115

Query: 212 PVVDADG 218
           PVVD D 
Sbjct: 116 PVVDNDN 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 37/127 (29%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSISGSGRADNSM 153
           V+ P  TV + LEI  +K  +   +  D     KL+G+V+  D+  +   S         
Sbjct: 108 VLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKS--------- 158

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRL 211
                                    V ++MTP    VV     +LE+A  +L E++  +L
Sbjct: 159 -----------------------TPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKL 195

Query: 212 PVVDADG 218
           P+V+ +G
Sbjct: 196 PIVNDNG 202

Length = 495

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 50.2 bits (121), Expect = 6e-09
 Identities = 19/42 (45%), Positives = 30/42 (71%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V P TT++EALE+L E  I   PV+D++ +LVG+V+  D++
Sbjct: 4   TVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 51.7 bits (125), Expect = 8e-09
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V + MT  E L      T+++EALE+L E +I   PV+DD+ KL GL+
Sbjct: 55  PVSEVMT-PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLI 102

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 54.8 bits (133), Expect = 9e-09
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V + MT KE L  V   TT++EALE+L E RI   PV+DD+ +L GL+
Sbjct: 148 PVSEVMT-KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195

Length = 486

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 41/130 (31%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVS--DYDLLALDSISGSGRAD 150
            V+ P  TV + LEI  +K  +G PV +D     KL+G+V+  D D L            
Sbjct: 5   SVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDSETP------ 58

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKY 208
                                       + ++MTP    VV      LE+A  +L E+K 
Sbjct: 59  ----------------------------LSEVMTPREVLVVAPTGITLEEANEILRESKK 90

Query: 209 RRLPVVDADG 218
            +LP+V+ DG
Sbjct: 91  GKLPIVNDDG 100

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 27/120 (22%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V P TTV EA  I+ E  I G  ++ D+ K VG++++ DL+                   
Sbjct: 6   VDPDTTVYEAANIMTENNI-GRLIVVDNEKPVGIITERDLVKK----------------- 47

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                    V     K     VG++M+   + +    +L +AA+L+ +   +RLPVVD D
Sbjct: 48  ---------VVSRNLKPREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD 98

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 37/123 (30%), Positives = 45/123 (36%), Gaps = 31/123 (25%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
             V P TTV EALE+     I+G PV +D   L GLV                   S   
Sbjct: 93  VTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVG---------------IRTSRDI 137

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
           +  S                   V   MT   V   E   LE+A  +L E K  +LP+VD
Sbjct: 138 DFLSK----------------VSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVD 181

Query: 216 ADG 218
            DG
Sbjct: 182 DDG 184

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V D MT       + P     EALE++ E +IT  PV+DD+ + VG++  +DLL 
Sbjct: 60  PVADVMTRNP--KTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 40/140 (28%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLL 138
           T G  MTT  E   +    TVDEAL+ + E+      I    V+D+  KL+G+VS  DLL
Sbjct: 133 TAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL 190

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
                     A+                            + DLM    V V    + E+
Sbjct: 191 ---------TAEPDEL------------------------LKDLMEDDVVSVLADDDQEE 217

Query: 199 AARLLLETKYRRLPVVDADG 218
            ARL  +     +PVVD D 
Sbjct: 218 VARLFEKYDLLAVPVVDEDN 237

Length = 451

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D+M+T  ++  V P T + E  E++VE  I G   + +D +LVG+V+  DLL
Sbjct: 58  VKDYMST--DVVTVPPDTPLSEVQELMVEHDI-GRVPVVEDGRLVGIVTRTDLL 108

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D MT       V P  +V+EA E+++E++I+G PV+DD  +LVG++++ DL 
Sbjct: 68  KVSDIMTRD--PITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           V + MT +EE+  V     ++EAL++L E RI   PV+D + +LVGL++  D++ 
Sbjct: 145 VSEVMT-REEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVK 198

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 33/134 (24%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TV D MT  E+   ++ T TV++ L+++ +   + FPV++   K+VG+V+  D+L     
Sbjct: 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK-- 246

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                          ST  T  +V               MT  P+ VR  T++   A+++
Sbjct: 247 --------------PST--TIEKV---------------MTKNPITVRAKTSVASVAQMM 275

Query: 204 LETKYRRLPVVDAD 217
           +      LPVVD++
Sbjct: 276 IWEGIEMLPVVDSN 289

Length = 432

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 22/121 (18%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V   T++D A ++L E RI   PV+D+  +LVG+V+  DLL          A  S F   
Sbjct: 258 VSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLL--------KHARPSPF--- 306

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                     Q+L        V  +MT   V VR  T   +    L +     LPV+DA 
Sbjct: 307 ----------QRLRFLRPPT-VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAA 355

Query: 218 G 218
           G
Sbjct: 356 G 356

Length = 382

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 28/122 (22%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V P T++ EA +++ E+ +    V+D D + +G+V++ D++   ++  +G   +     
Sbjct: 5   TVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVR--AV-AAGIDLD----- 56

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                                 V ++MT   V V     + +AA+L+ +   R   VVD 
Sbjct: 57  --------------------TPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK 96

Query: 217 DG 218
            G
Sbjct: 97  GG 98

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 34/125 (27%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
            +   + P  +V  A  ++ + RI G PV++D  KLVG+++  D+               
Sbjct: 1   RDPITIDPLDSVGRAARLMEKHRIGGLPVVEDG-KLVGIITSRDVRR------------- 46

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                   ++V D MT   V +    +L +A RL+ E K  RLP
Sbjct: 47  -AHP-------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLP 86

Query: 213 VVDAD 217
           V+   
Sbjct: 87  VLRER 91

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
              +  S      S         V + MT K  +  V   TT+++   I+ +K I   PV
Sbjct: 57  YVTLLYSVIFLDESKIKKLLGKKVEEIMTKK--VITVDEDTTIEDVARIMSKKNIKRLPV 114

Query: 122 IDDDWKLVGLVSDYDLL 138
           +DD  KLVG++S  D++
Sbjct: 115 VDDG-KLVGIISRGDII 130

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVID 123
           +     +    AA    +  V + MT    +  V P T ++EALE++VE  +I   PV+D
Sbjct: 44  IITERDILRALAAGGKRLLPVKEVMTKP--VVTVDPDTPLEEALELMVERHKIRRLPVVD 101

Query: 124 DD-WKLVGLVSDYDLL 138
           DD  KLVG+++  D+L
Sbjct: 102 DDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           V   MTT E+L        +++  E++++ R   +PV+D+D K+VG++S Y LL+
Sbjct: 248 VSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301

Length = 546

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT   ++  V P  TV+EA  ++ E RI   PV++D  +LVG++++ DLL
Sbjct: 68  PVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVEDG-RLVGIITETDLL 119

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239971 cd04598, CBS_pair_GGDEF_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 28/114 (24%)

Query: 93  EELHVVKPTTTVDEALEILVE-KRITGFPVIDDDWKLVGLVSDYDLLALDSISGS-GRAD 150
                V P TTV++ LE       ++   V+DD  + VGL+    L+ L  +S   GRA 
Sbjct: 1   RPAPTVSPDTTVNDVLERFERDPDLSALAVVDDG-RPVGLIMREALMEL--LSTPYGRA- 56

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
                              L  K   K V ++M P P++V   T LE+ +RL  
Sbjct: 57  -------------------LYGK---KPVSEVMDPDPLIVEADTPLEEVSRLAT 88

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 119

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   MT  E+L       T++EA EIL E +I   P++DDD +LVGL++  D+ 
Sbjct: 142 KVSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIE 196

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 33/126 (26%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           E+   +  T TV +  E+  E   + FPV+D+  K+VG+V+  D      ++G    D  
Sbjct: 2   EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKD------VAG---KDPD 52

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                     +  +MT  P+ V   T++   A +++      LP
Sbjct: 53  T------------------------TIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLP 88

Query: 213 VVDADG 218
           VVD + 
Sbjct: 89  VVDDNK 94

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 37/124 (29%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            +    ++ EA ++++E+ I   PV+D+D +LVG+V+ +D                    
Sbjct: 6   TISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWD-------------------- 45

Query: 157 VDSTWKTFNEVQKLLSK---TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
                         +SK    + K V D+MT   +       ++ AAR +       LPV
Sbjct: 46  --------------ISKAVARDKKSVEDIMTRNVITATPDEPIDVAARKMERHNISALPV 91

Query: 214 VDAD 217
           VDA+
Sbjct: 92  VDAE 95

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVGD MT    +  V     VDEA  ++ E ++   PV+DDD +LVG+VS  DL 
Sbjct: 59  TVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV--SDYD 136
           V DFMT  E+L      TT+ EA +I+ + ++   P++D +  LV LV   DYD
Sbjct: 163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYD 216

Length = 502

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 14/44 (31%), Positives = 31/44 (70%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
             +P T + + L++LVE+R++  P++D++ K+V + S +D++ L
Sbjct: 5   TARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 34/126 (26%)

Query: 96  HVVKPTTTVDEALEIL-VEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 154
            +V P  ++ +AL  +          V+D++ +L+G V+D D                  
Sbjct: 5   LLVSPDASILDALRKIDKNALRIVL-VVDENGRLLGTVTDGD------------------ 45

Query: 155 PEVDSTWKTFNEVQKLLSKTNG--KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                       +++ L K       V ++M   P+  +  ++ E+   L+ E   R LP
Sbjct: 46  ------------IRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLP 93

Query: 213 VVDADG 218
           ++D +G
Sbjct: 94  ILDEEG 99

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 18/127 (14%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL--LALDSISGSGRADN 151
           ++  +     V +A +++ +  I+G PV+D+  KL+G +S  DL  L L         D 
Sbjct: 2   KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPD------DL 55

Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 211
            ++  +          +K       K          +    ++ L++    L+  K  R+
Sbjct: 56  LLYRTI----TFKELSEKFTDSDGVKSRP------LITCTPSSTLKEVITKLVANKVHRV 105

Query: 212 PVVDADG 218
            VVD +G
Sbjct: 106 WVVDEEG 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + M T   +  V P T + EA EI+VE +I   PV+DD   LVG+++  D L
Sbjct: 68  PVAEVMKTD--VLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT    +  ++P T+V +   +++E  I G PV+DD  KLVG+V+  D+L
Sbjct: 69  VSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDG-KLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
            V + MT +E+L V     +++EA E+L E R    P+++D+ +LV LVS  DL    
Sbjct: 160 PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217

Length = 495

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + MT +E L V     T++EA EIL E +    P+++DD +LV LV+  DL 
Sbjct: 58  PLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               MT       V P T VDEA ++L+E  I+  PV+D++ +L+G+++  DLL
Sbjct: 69  AHQIMTRD--PITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 32/127 (25%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDSISGSGRADN 151
           + L  + P  T+ EA  +     I G PV+DD  KLVG+V+  D+  A+           
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDG-KLVGIVTLSDIAHAIARG-------- 51

Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 211
                                    K V D+MT   + + E   L DA RL+ +    RL
Sbjct: 52  ---------------------LELAK-VKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRL 89

Query: 212 PVVDADG 218
            V D +G
Sbjct: 90  IVTDDEG 96

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
            V V   T LE+A  LL E   RRLPVVD +G
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEG 33

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 34/125 (27%)

Query: 96  HVVK--PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
           + V   P  T+ EA++++ +K++    V+D D KL+G+VS      L+S+          
Sbjct: 3   NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVS------LESL---------- 46

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
                       +  K       K + D+M      V+   +L D   L+L+   + +PV
Sbjct: 47  -----------EQAYK-----EAKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPV 90

Query: 214 VDADG 218
           VD DG
Sbjct: 91  VDEDG 95

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V D MT    +  V   T + E  E++ E RI   PV+    +LVG+VS  DLL 
Sbjct: 82  KVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGG-RLVGIVSRADLLR 134

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 43.3 bits (103), Expect = 8e-06
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 29/122 (23%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
              P T++ EA   + E+RI+   V+DD  + +G+V++ D+L L                
Sbjct: 5   TCPPDTSLAEAASRMRERRISSIVVVDDG-RPLGIVTERDILRLL--------------- 48

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                                 VG++M+   + V   T+L DA +L+ E   R L VVD 
Sbjct: 49  -------------ASGPDLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD 95

Query: 217 DG 218
           DG
Sbjct: 96  DG 97

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            VG+ M+T   L  + P  +++EA +++ +  I   PV+DDD +LVG+V+  D++
Sbjct: 59  PVGEVMSTP--LITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 35/126 (27%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
            ++ V P T + EA+  + E+ +    V++   +LVGL+                     
Sbjct: 2   TIYTVAPETLLSEAVATMAEQDLGSLVVMERG-ELVGLL--------------------- 39

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKM----VGDLMTPAPVVVRETTNLEDAARLLLETKYR 209
                    TF EV + +++    +    V  +M P P+V     ++++  RL++E   R
Sbjct: 40  ---------TFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLR 90

Query: 210 RLPVVD 215
            LPV+D
Sbjct: 91  YLPVLD 96

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 17/104 (16%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD-- 150
            ++  V P  TV +A+E + E  ++  PV+DD  ++VG + + DLL       +  +   
Sbjct: 1   GDVVSVAPDDTVSQAIERMREYGVSQLPVVDDG-RVVGSIDESDLLDALIEGKAKFSLPV 59

Query: 151 ----NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVV 190
                   P VD       E+ +LL + N          A VV 
Sbjct: 60  REVMGEPLPTVDPD-APIEELSELLDRGN---------VAVVVD 93

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT  +++  + P  ++++A E++V  +I   PV++D  +LVG+V+  D++
Sbjct: 91  VRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDG-RLVGIVTRGDII 141

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 27/124 (21%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
           V+  TT + EA E L+E +     V+D D  +VG+++  DLL                  
Sbjct: 5   VLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL-----------------R 47

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                +           T       L+T     V     L  A   +     R+LPVVD 
Sbjct: 48  ALEADEAGEPSAVDEVAT-----PPLLT-----VHPDEPLAHALDRMASRGLRQLPVVDR 97

Query: 217 DGWN 220
               
Sbjct: 98  GNPG 101

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239987 cd04614, CBS_pair_1, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           SG+ T  D +  K E+      TTV E  + +   RI   P+I+ + KL+GL+ D+DLL
Sbjct: 37  SGIITERDLIA-KSEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL 94

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 96

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 32/121 (26%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
             V+P  T++EA E+L+    T  PV++   ++VG++S  D                   
Sbjct: 5   KTVRPEATIEEARELLLRYGHTALPVVEGG-RVVGIISRRD------------------- 44

Query: 156 EVDSTWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 214
                      V+K L    G   V D M+   V V   T L +   L++E    R+PVV
Sbjct: 45  -----------VEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVV 93

Query: 215 D 215
           +
Sbjct: 94  E 94

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           TV   MT   +L  V    ++ E L++L E+ +    V++D  +++GL+++ DLL  
Sbjct: 58  TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLRR 114

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 91  TKEELHV-----VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 145
           T ++LH+     V PT TV +A+EIL E      PV+ +  K++G V+  +LL+      
Sbjct: 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK 395

Query: 146 SGRAD------NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVR 191
           +   D      +  F ++    +  +++ K L K +  +V +   P  VV +
Sbjct: 396 ANPDDAVSKVMSKKFIQIGEG-EKLSDLSKFLEKNSSAIVTEEGKPIGVVTK 446

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V P   V EA +++VE  I   PV+DD  KLVG+V+  D++ 
Sbjct: 64  TVSPDDDVKEAAKLMVENNIRRVPVVDDG-KLVGIVTVADIVR 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           TVGD M+    +  V+P T + E + +L +      PV+D+D +LVG+V+  DL+A
Sbjct: 70  TVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            V   MT           T V EAL ++V+ +    PV+D   ++VGL+ 
Sbjct: 59  LVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLD 106

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            V D     ++   V P T++ EA  ++ E  +   PV+D++ KL+GLVS  DL
Sbjct: 69  QVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDL 120

Length = 546

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            ++ D M   E++  V+P  ++ + L +++++     PV+D+D KLVGL++
Sbjct: 54  KSLEDIM--LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLIT 102

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            VG+ M++   L  V   T++ +A +++ E  I    V+DDD +L+GL+S  DLL 
Sbjct: 57  PVGEVMSSP--LLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 33/127 (25%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVI----DDDWKLVGLVSDYDLLALDSISGSGR 148
             +  +    TV EAL+++ E  ++   V      D +   G+V+  D+L          
Sbjct: 1   PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAY---GIVTMRDIL---------- 47

Query: 149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 208
               +  E     +                V ++MT   + V    +++  ARL+  T  
Sbjct: 48  --KKVVAEGRDPDRV--------------NVYEIMTKPLISVSPDMDIKYCARLMERTNI 91

Query: 209 RRLPVVD 215
           RR PVV+
Sbjct: 92  RRAPVVE 98

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLA 139
              D MT      VV P  ++++AL+   +      PV+DDD  KL+G++S  DLL+
Sbjct: 59  VASDIMTKPPV--VVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239981 cd04608, CBS_pair_PALP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V PT T  EA+EIL EK     PV+D+  K++G+V+  +LL+  S+S SG+   S  P  
Sbjct: 7   VLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLS--SLS-SGKVQPSD-PVS 62

Query: 158 DSTWKTFNEVQK 169
            + +K F  V K
Sbjct: 63  KALYKQFKRVNK 74

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TV   M+T   ++ V P  ++  A+E+++E  I   PV+++  +LVG+V  +D+L
Sbjct: 68  TVEKIMSTP--VYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 18/106 (16%)

Query: 110 ILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK 169
           +++E   TG PV+    +L+G+++  D++   S+  +   D        S       V+K
Sbjct: 18  LMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVR-TSVEDQQRTQTKASP-----TVEK 71

Query: 170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
           ++S           TP   V  + + +  A  L+LE    RLPVV+
Sbjct: 72  IMS-----------TPVYSVTPDDS-IATAVELMLEHDIGRLPVVN 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 30/119 (25%)

Query: 100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159
           P TT+ EA  ++ E R++   V+DD  +LVG+V+D DL                      
Sbjct: 8   PDTTIREAARLMTEHRVSSLLVVDDG-RLVGIVTDRDLR--------------------- 45

Query: 160 TWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                N V  +    +    V ++MT  P+ +     + +A  L+LE     LPVVD  
Sbjct: 46  -----NRV--VAEGLDPDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDDG 97

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 70  TLTANSAAPSSGVYT---VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           TL      P+ G      VGD MT         P  T+ +AL+ + E+ I   PV+DD  
Sbjct: 40  TLADIRRVPAEGREATVLVGDVMTRD--PVTASPDETLRDALKRMAERDIGRLPVVDDSG 97

Query: 127 KLVGLVSDYDLL 138
           +LVG+VS  DLL
Sbjct: 98  RLVGIVSRSDLL 109

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240010 cd04639, CBS_pair_26, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 29/121 (23%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           + P  T+D+A + L+      FPV+D D  LVGL++  DL  + +++  G          
Sbjct: 6   LSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDL--IRALAEGGPDA------- 56

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                               + G +    P V    T L+   RL+ +     +PVVD  
Sbjct: 57  -------------------PVRGVMRRDFPTVSPSAT-LDAVLRLMQQGGAPAVPVVDGS 96

Query: 218 G 218
           G
Sbjct: 97  G 97

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 31/126 (24%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDSISGSGRADNS 152
           ++  +    T++E LE++ E   + FPV D D   ++G+V   DLL              
Sbjct: 2   DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRA------------ 49

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                            L        + DL+ P P+ V E+T L+D    + + +     
Sbjct: 50  -----------------LAEGEEDLDLRDLLRP-PLFVPESTPLDDLLEEMRKERSHMAI 91

Query: 213 VVDADG 218
           VVD  G
Sbjct: 92  VVDEYG 97

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +++  V    T+DEAL+I+ EK+I   PV+DD+ KL+G+V   D+L
Sbjct: 64  SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDDN-KLIGVVRTKDIL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 29/134 (21%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V D M T + L ++ PTT+  +AL  + EKR+    V D++ +LVG+ +D DL       
Sbjct: 157 VKDLMQTTD-LPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLR------ 209

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
              RA         S                   V D MT  P   +    L +A   L 
Sbjct: 210 ---RALLG----GGSLKSE---------------VRDFMTLGPKTFKLDALLLEALEFLE 247

Query: 205 ETKYRRLPVVDADG 218
             K   L VVD   
Sbjct: 248 RRKITSLVVVDDHN 261

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           V DL    PV V   T+L++A  L+ E   + LPVVD +G
Sbjct: 70  VRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEG 109

Length = 546

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 27/123 (21%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
             V   T +  A+  +        PV+DD  +LVG+++ YD+L+         A  S   
Sbjct: 4   SCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLS--------YALES--- 52

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
                        + L       V ++M    + +    ++  A  L+      RLPV+D
Sbjct: 53  -------------EELKDAK---VREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLD 96

Query: 216 ADG 218
             G
Sbjct: 97  DKG 99

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 75  SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK----RITGFPVIDDDWKLVG 130
           S A +    +V D MT      V+  T T DE +++   K     I+  PV+D + +++G
Sbjct: 47  SKAVARDKKSVEDIMTRN----VI--TATPDEPIDVAARKMERHNISALPVVDAENRVIG 100

Query: 131 LVSDYDLLAL 140
           +++  D+  L
Sbjct: 101 IITSEDISKL 110

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239967 cd04594, CBS_pair_EriC_assoc_archaea, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 35/118 (29%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           VK    V EA  I++E  +   PV+D + K +G V   D+                    
Sbjct: 6   VKDYDKVYEAKRIMIENDLLSLPVVDYN-KFLGAVYLKDIENATYGD------------- 51

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
                                V D +      VR T+  E+A  ++++ K R  PVVD
Sbjct: 52  ---------------------VVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD 88

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 104

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 35/123 (28%)

Query: 97  VVKPTTTVDEALEILVEKRITGFP-VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
            + P  TV +AL  L+ KR  G   V+D++ + VG+V++ D   +D  +           
Sbjct: 101 TLSPDDTVGDALA-LLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFT----------- 148

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
                                  V D+M+   V +   T+  +A  LL   + +  PVVD
Sbjct: 149 ----------------------QVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVD 186

Query: 216 ADG 218
           ADG
Sbjct: 187 ADG 189

Length = 479

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 184 TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           T   V V   T++ +AARL+L+     LPVVD DG
Sbjct: 1   TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDDG 35

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
            V +  TT + +A  L+ E K R LPVVD +G
Sbjct: 3   VVTITPTTTIAEALELMREHKIRHLPVVDEEG 34

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 81  GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           GV TV D MTT  E+  V P  ++ +  +++++ +   +PV+DD  KLVG +S  D+L 
Sbjct: 58  GVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDG-KLVGQISRRDVLR 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 32/125 (25%)

Query: 97  VVKPTTTVDEAL-EILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
            V    T+ E + E ++      F V+D++ + VG++S  DL A   I  S  A  +   
Sbjct: 5   TVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRA---IPTSQWAQTT--- 58

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPV 213
                                  V  +MTPA   V V    +L +  +LL E     L V
Sbjct: 59  -----------------------VIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAV 95

Query: 214 VDADG 218
           V+  G
Sbjct: 96  VEDSG 100

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239989 cd04617, CBS_pair_4, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 29/128 (22%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
           VV+  T+V +A+  L  + +    V+D+D  LVG+VS  DLL   SI G           
Sbjct: 5   VVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKA-SIGG----------- 52

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVV 214
                    ++QK+        VG +MT  P         ++ +AA+ L+E +   LPVV
Sbjct: 53  --------ADLQKV-------PVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVV 97

Query: 215 DADGWNYH 222
           +       
Sbjct: 98  EKVDEGLE 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 118

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALD 141
           TV + MT + ++  +  T TV+E +E+++E   +  PV D D   ++G+V   DLL   
Sbjct: 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRAL 265

Length = 429

>gnl|CDD|239955 cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 34/126 (26%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
            E   V+P   + +AL ++ +  +    V+D D + +G V+  +                
Sbjct: 1   TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREA--------------- 45

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                              ++ +G   GD   P  V V    +L      +       LP
Sbjct: 46  -------------------ARASGGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLP 86

Query: 213 VVDADG 218
            VD DG
Sbjct: 87  CVDEDG 92

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 106

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 188 VVVRETTNLEDAARLLLETKYRRLPVVDAD 217
           V V  TT + +AA++++   +RRLPVVD  
Sbjct: 4   VTVPPTTPIMEAAKIMVRNGFRRLPVVDEG 33

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGW 219
           P P V+  TT L +AA  L+E+K+    VVD DG 
Sbjct: 1   PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGG 35

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V DFMT   +    K    + EALE L  ++IT   V+DD  K++G++
Sbjct: 221 EVRDFMTLGPK--TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 181 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           +L+ PA  VV  T ++ D  R+ LE   + L VVD DG
Sbjct: 451 ELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDG 488

Length = 574

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            V + M     L  V P   ++E  E+L    +    V+D+  K VG+++  DLL  
Sbjct: 58  PVREVMGEP--LPTVDPDAPIEELSELLDRGNVA--VVVDEGGKFVGIITRADLLKY 110

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 177 KMVGDLMTPAPVVVR--ETTNLEDAARLLLETKYRRLPVVDADGWN 220
           + V ++MTP   +V    T  +E+   L+LE+ + R+PV D D  N
Sbjct: 206 RTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDN 251

Length = 429

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 18/137 (13%)

Query: 79  SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                T    M +   +  V P  ++ + + ++ +K I+  PVI++D K+VG +++ D++
Sbjct: 61  EKTRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEED-KVVGSITENDIV 117

Query: 139 AL-----DSISGSGRADNSM---FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVV 190
                  +SI    R    M   FP V    ++ N + +LL +    +V +      ++ 
Sbjct: 118 RALLEGMESIRSL-RVREVMGEPFPTVSPD-ESLNVISQLLEEHPAVLVVENGKVVGIIT 175

Query: 191 RETTNLEDAARLLLETK 207
           +      D  +LL  TK
Sbjct: 176 K-----ADIMKLLAGTK 187

Length = 187

>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 15/72 (20%)

Query: 81  GVYTVGDF---------MTTKEELHVVKPTTT------VDEALEILVEKRITGFPVIDDD 125
           GV+T GD          +TT     + +  TT        +A EIL++++IT  PV+D++
Sbjct: 244 GVFTDGDLRRWLVGGGALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDEN 303

Query: 126 WKLVGLVSDYDL 137
            KL G ++  D 
Sbjct: 304 GKLTGAINLQDF 315

Length = 321

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 9/76 (11%)

Query: 149 ADNSMFPEVDSTWKTF---NEVQKLLS----KTNGKMVGDLMTPA--PVVVRETTNLEDA 199
           A+    P + +++ TF     + K LS    K +   V D+MTP      +RET  +ED 
Sbjct: 153 ANEKGLPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDW 212

Query: 200 ARLLLETKYRRLPVVD 215
             L+ +T + R PVV+
Sbjct: 213 LDLVEKTGHSRFPVVN 228

Length = 432

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           TV   MTT   +  V+P T   E +  L ++ +   PV+D   KLVG+VS  DL+A
Sbjct: 316 TVKGIMTTP--VVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIA 369

Length = 382

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            V + MT       + P  TV EAL +++E+ I   PV+DD  +LVG++S  DLL L
Sbjct: 58  PVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDDG-RLVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 13/53 (24%), Positives = 30/53 (56%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + + MT+ ++L        ++EA  +L + +    P++++D +LV LV+  D+
Sbjct: 165 LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDV 217

Length = 505

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
COG4109	432	Predicted transcriptional regulator containing CBS	99.82
COG2524	294	Predicted transcriptional regulator, contains C-te	99.77
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.73
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.7
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.69
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.66
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.66
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.65
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.65
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.65
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.65
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.64
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.64
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.64
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.64
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.64
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.63
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.63
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.63
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.63
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.62
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.62
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.62
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.61
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.61
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.61
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.6
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.6
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.59
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.59
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.59
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.59
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.58
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.58
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.58
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.58
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.58
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.58
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.58
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.58
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.57
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.57
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.57
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.57
COG3620	187	Predicted transcriptional regulator with C-termina	99.57
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.57
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.57
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.57
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.56
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.56
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.56
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.56
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.56
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.56
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.55
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.55
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.55
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.55
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.55
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.55
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.55
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.55
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.55
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.54
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.54
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.54
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.54
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.53
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.53
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.52
PRK11573	413	hypothetical protein; Provisional	99.52
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.51
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.5
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.5
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.49
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.49
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.49
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.48
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.48
COG2905	610	Predicted signal-transduction protein containing c	99.48
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.47
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.47
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.47
COG0517	117	FOG: CBS domain [General function prediction only]	99.45
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.44
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.44
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.43
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.41
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.33
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.33
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.19
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.17
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.12
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	99.08
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.98
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.92
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.92
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.91
COG2524	294	Predicted transcriptional regulator, contains C-te	98.84
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.83
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.74
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.69
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.67
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.58
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.56
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.54
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.53
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.51
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.47
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.47
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.47
PRK11573	413	hypothetical protein; Provisional	98.43
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.42
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.42
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.41
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.4
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.4
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.39
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.38
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.37
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.37
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.35
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.35
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.35
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.34
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.34
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.34
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.34
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.32
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.31
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.31
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.29
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.29
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.29
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.29
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.28
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.28
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.28
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.27
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.27
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.26
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.26
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.25
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.25
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.24
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.23
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.23
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.22
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.22
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.22
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.22
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.21
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.21
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.2
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.2
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.2
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.19
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.19
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.18
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.17
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.14
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.14
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.14
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.14
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.13
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.12
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.12
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.1
COG0517	117	FOG: CBS domain [General function prediction only]	98.09
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.09
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.09
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.08
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.07
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.07
COG3620	187	Predicted transcriptional regulator with C-termina	98.07
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.06
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.05
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.03
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.01
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.01
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.97
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.97
COG2905	610	Predicted signal-transduction protein containing c	97.97
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.96
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.95
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.94
COG4109	432	Predicted transcriptional regulator containing CBS	97.87
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.87
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.85
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.82
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.78
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	97.77
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.71
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.48
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.48
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.47
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.38
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.18
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.83
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	96.68
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	95.79
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	95.37
KOG2118	498	consensus Predicted membrane protein, contains two	95.01
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.82
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	93.69
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.08
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	89.84
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	89.8
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	82.31

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.82  E-value=6.2e-20  Score=153.49  Aligned_cols=168  Identities=23%  Similarity=0.327  Sum_probs=148.1

Q ss_pred             chhhhhccCCEEEEecCccchhHHH--hccCCCceEEecCCce-eeeehhhhcccC---CCCCcccccccccccCceeEE
Q 026495           25 GRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANSAA---PSSGVYTVGDFMTTKEELHVV   98 (237)
Q Consensus        25 ~~~ai~~~v~~li~~~~~~~v~~~~--~~~~~~v~v~~~sp~~-~~~~~~~~~~~~---~~~~~~~v~~im~~~~~~~~v   98 (237)
                      .+.|++++...++ ++ |+.+.+++  .+.+.++|+++ +.++ |..+.++..++.   .+..-+.|+++|.|.++..++
T Consensus       127 q~lAL~~~~AVLv-TG-GF~~s~evi~lAne~~lPvls-tsYDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL  203 (432)
T COG4109         127 QLLALENGNAVLV-TG-GFDVSDEVIKLANEKGLPVLS-TSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYL  203 (432)
T ss_pred             HHHHHhcCCeEEE-eC-CCCccHHHHHhhcccCCceEE-ecccceeHHHHHHHHHHHhhhhhheeeHHHhccccccceec
Confidence            3567888877666 55 78888888  78899999999 7788 998888875433   234567899999988899999


Q ss_pred             cCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhcCCc
Q 026495           99 KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM  178 (237)
Q Consensus        99 ~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (237)
                      .+++++++..++..++++++|||+|+..+++|+||.+|+...                                 ..+.+
T Consensus       204 ~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~---------------------------------~~~t~  250 (432)
T COG4109         204 RETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK---------------------------------KPSTT  250 (432)
T ss_pred             cccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC---------------------------------CCCcc
Confidence            999999999999999999999999999999999999999852                                 34688


Q ss_pred             cccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       179 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      +..+|+++|.++.+.+++..+.+.|.-.+++.+||++++.+++|+||++|
T Consensus       251 ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~d  300 (432)
T COG4109         251 IEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQD  300 (432)
T ss_pred             HHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHH
Confidence            99999999999999999999999999999999999999999999999987

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.77  E-value=1.9e-18  Score=139.07  Aligned_cols=118  Identities=29%  Similarity=0.376  Sum_probs=107.3

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (237)
                      ..-+.+|+++|++  ++.++.+++|+.++.+.|.+++++.+||+|+ ++++|++|..|+..+...+              
T Consensus       168 siPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g--------------  230 (294)
T COG2524         168 SIPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANG--------------  230 (294)
T ss_pred             ecCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcC--------------
Confidence            3456689999999  8999999999999999999999999999996 5999999999999754322              


Q ss_pred             cchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                     ..+..++++|.++++++.+|+.+.+|+++|..+++.+|.|+|.+|+.+|+||+.|
T Consensus       231 ---------------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTD  285 (294)
T COG2524         231 ---------------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTD  285 (294)
T ss_pred             ---------------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHH
Confidence                           2467899999999999999999999999999999999999998999999999987

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.73  E-value=1.4e-17  Score=136.52  Aligned_cols=130  Identities=28%  Similarity=0.361  Sum_probs=113.7

Q ss_pred             ccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcc
Q 026495           75 SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  154 (237)
Q Consensus        75 ~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~  154 (237)
                      +...++..++..+||++  ++++++.++++.+|.+.|.+++++.+||+|++.+++|+||.+|+.+....           
T Consensus       237 a~~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~-----------  303 (382)
T COG3448         237 ALRRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARP-----------  303 (382)
T ss_pred             HHHHHhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCc-----------
Confidence            44567788999999999  99999999999999999999999999999999999999999999963211           


Q ss_pred             cccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                             .-    .+.+.......++.+|+.+..++.++++..+++..|.+.+.+++||+|++|+++|+||..|
T Consensus       304 -------~p----~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtD  366 (382)
T COG3448         304 -------SP----FQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTD  366 (382)
T ss_pred             -------ch----HHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHH
Confidence                   11    1222344567899999999999999999999999999999999999999999999999887

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.70  E-value=5.5e-16  Score=112.82  Aligned_cols=106  Identities=21%  Similarity=0.226  Sum_probs=91.8

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++.+.++.++.+.|.+.+.+.+||+|++|+++|+++..|+.+...                             ..
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~~   52 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP-----------------------------ND   52 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-----------------------------cc
Confidence            3678899999999999999999999999998899999999999986310                             00


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|..++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|
T Consensus        53 ~~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~d  107 (111)
T cd04603          53 YETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERE  107 (111)
T ss_pred             ccccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHH
Confidence            1134688899888899999999999999999999999999997899999999876

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=6.4e-16  Score=112.95  Aligned_cols=108  Identities=24%  Similarity=0.264  Sum_probs=93.0

Q ss_pred             eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhh
Q 026495           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT  174 (237)
Q Consensus        95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (237)
                      +.++++++++.++.+.|.+.+...+||+|++|+++|+++.+|+.+......                          ...
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~--------------------------~~~   56 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCG--------------------------GPG   56 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcC--------------------------CCc
Confidence            677899999999999999999999999998899999999999986421100                          011


Q ss_pred             cCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       175 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ...++.++|.++++++.+++++.++++.|.+++..++||+|++|+++|+|+++|
T Consensus        57 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~d  110 (114)
T cd04619          57 CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARD  110 (114)
T ss_pred             ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHh
Confidence            235688999888999999999999999999999999999998899999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.66  E-value=8.2e-16  Score=130.51  Aligned_cols=129  Identities=21%  Similarity=0.313  Sum_probs=108.0

Q ss_pred             eehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCC
Q 026495           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGS  146 (237)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~  146 (237)
                      +..++..  ...+...+|+++|+++.++.+++.+.+++++++.+.+++++++||++++ ++++|+|+.+|++....    
T Consensus        54 e~~~i~~--vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~----  127 (292)
T PRK15094         54 TRDMLEG--VMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR----  127 (292)
T ss_pred             HHHHHHH--HhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh----
Confidence            4444444  5567889999999997779999999999999999999999999999876 78999999999985321    


Q ss_pred             CCCCCCcccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEc
Q 026495          147 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKC  226 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~  226 (237)
                                               .......+.++|.+ +.++++++++.++++.|.+++.+.+||+|++|.++|+||.
T Consensus       128 -------------------------~~~~~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTl  181 (292)
T PRK15094        128 -------------------------SDAEAFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTI  181 (292)
T ss_pred             -------------------------ccCCcCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEH
Confidence                                     00112347788865 5689999999999999999999999999998999999998


Q ss_pred             cc
Q 026495          227 SK  228 (237)
Q Consensus       227 ~d  228 (237)
                      .|
T Consensus       182 eD  183 (292)
T PRK15094        182 ED  183 (292)
T ss_pred             HH
Confidence            76

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.66  E-value=8.4e-16  Score=132.48  Aligned_cols=117  Identities=21%  Similarity=0.205  Sum_probs=102.9

Q ss_pred             cccccccccccCc--eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495           82 VYTVGDFMTTKEE--LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        82 ~~~v~~im~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      ..+|+++|.+  +  ++++++++++.++.+.|.+.+...+||+|++|+++|+|+..|+.++....               
T Consensus       196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~---------------  258 (321)
T PRK11543        196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG---------------  258 (321)
T ss_pred             HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC---------------
Confidence            5689999998  6  99999999999999999988889999999999999999999998642110               


Q ss_pred             chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                   .....++.++|.++++++.+++++.+|++.|.+++...+||+|++|+++|+||++|
T Consensus       259 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~d  314 (321)
T PRK11543        259 -------------GALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQD  314 (321)
T ss_pred             -------------CCcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHH
Confidence                         11235688999999999999999999999999999999999998889999999876

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.65  E-value=2.5e-15  Score=108.55  Aligned_cols=102  Identities=25%  Similarity=0.353  Sum_probs=91.8

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++.+++++.++...|.+.+.+.+||+|++|+++|+++..++....                                
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~--------------------------------   50 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD--------------------------------   50 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc--------------------------------
Confidence            688899999999999999999989999999889999999999997420                                


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                       ...++.++|..++.++++++++.++++.|.+++...+||++++|+++|+++..|
T Consensus        51 -~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~d  104 (108)
T cd04596          51 -PDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQD  104 (108)
T ss_pred             -ccccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHH
Confidence             135688889888899999999999999999999999999998899999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.65  E-value=1.7e-15  Score=130.88  Aligned_cols=120  Identities=23%  Similarity=0.267  Sum_probs=102.0

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      ..++|+++|.+.++++++++++++.++++.|.+++...+||+|++|+++|+||.+|+.+..... .              
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~-~--------------  264 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMG-I--------------  264 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcC-C--------------
Confidence            6678999998533689999999999999999998888888889889999999999998642100 0              


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                  .....++.++|.+++.++.+++++.+|++.|.+++.+.+||++ +|+++|+||++|
T Consensus       265 ------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~d  319 (326)
T PRK10892        265 ------------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHD  319 (326)
T ss_pred             ------------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHH
Confidence                        0113579999999999999999999999999999999999998 689999999987

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=3.1e-15  Score=106.80  Aligned_cols=91  Identities=31%  Similarity=0.434  Sum_probs=82.7

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      .+.++++++++.++.+.|.+++++.+||+|++ |+++|++|..|+.+..                               
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-------------------------------   50 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-------------------------------   50 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence            47889999999999999999999999999974 8999999999998521                               


Q ss_pred             hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEccc
Q 026495          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD-GWNYHKRKCSK  228 (237)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~iGvIt~~d  228 (237)
                          .         +.++.+++++.+|++.|.+++.+.+||++++ |+++|+||.+|
T Consensus        51 ----~---------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d   94 (98)
T cd04618          51 ----R---------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRR   94 (98)
T ss_pred             ----e---------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhh
Confidence                0         6789999999999999999999999999987 89999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=4.4e-15  Score=109.14  Aligned_cols=108  Identities=27%  Similarity=0.271  Sum_probs=91.1

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++++++++.++++.|..++...+||+|++|+++|+|+..|+.+......                           .
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~---------------------------~   54 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA---------------------------D   54 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC---------------------------C
Confidence            4678999999999999999999999999998899999999999986421100                           0


Q ss_pred             hcCCcccccccc--CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC---CcEEEEEEccc
Q 026495          174 TNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD---GWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---~~~iGvIt~~d  228 (237)
                      ....++.++|.+  +++++.+++++.+++++|.+++.+.+||+|++   |+++|+||++|
T Consensus        55 ~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~  114 (118)
T cd04617          55 LQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTN  114 (118)
T ss_pred             ccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhh
Confidence            113457788874  67899999999999999999999999999876   69999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=4.4e-15  Score=109.39  Aligned_cols=115  Identities=21%  Similarity=0.300  Sum_probs=89.5

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|++++..........           .   .....   
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~-----------~---~~~~~---   64 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLD-----------L---TVGEA---   64 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcccccc-----------C---CHHHH---
Confidence            578899999999999999999999999999889999999999999743211100000           0   00000   


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                         ....+.|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus        65 ---~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~d  116 (120)
T cd04641          65 ---LERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSD  116 (120)
T ss_pred             ---HhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHH
Confidence               0122345566789999999999999999999999999997799999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=4.9e-15  Score=108.09  Aligned_cols=108  Identities=23%  Similarity=0.276  Sum_probs=92.0

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      +++++.++.++.++++.|.+.+.+.+||+|++ |+++|+++.+|+++.+...+.                          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~--------------------------   55 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR--------------------------   55 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC--------------------------
Confidence            57889999999999999999999999999987 899999999999864221100                          


Q ss_pred             hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .....++.++|..+++++++++++.++++.|.+.+.+.+||+++ |+++|+|+++|
T Consensus        56 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~d  110 (114)
T cd04630          56 DPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTD  110 (114)
T ss_pred             CCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHH
Confidence            01135688899888999999999999999999999999999996 99999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.64  E-value=1.9e-15  Score=134.00  Aligned_cols=127  Identities=20%  Similarity=0.209  Sum_probs=109.1

Q ss_pred             eehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCC
Q 026495           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGS  146 (237)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~  146 (237)
                      +..++..  ...+.+++|+++|+|+.++.+++.+++++++.+.+.+++++++||++++ ++++|+|+.+|++....    
T Consensus       178 E~~~i~~--vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~----  251 (408)
T TIGR03520       178 EQKILQG--IVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN----  251 (408)
T ss_pred             HHHHHHH--HhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc----
Confidence            4444444  5678899999999998899999999999999999999999999999865 68999999999985311    


Q ss_pred             CCCCCCcccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEc
Q 026495          147 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKC  226 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~  226 (237)
                                                . ...++.++|. ++.++++++++.++++.|.+++.+.++|+|++|..+|+||.
T Consensus       252 --------------------------~-~~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~  303 (408)
T TIGR03520       252 --------------------------K-KNFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTL  303 (408)
T ss_pred             --------------------------c-CCCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEH
Confidence                                      0 1234677775 57899999999999999999999999999999999999999


Q ss_pred             cc
Q 026495          227 SK  228 (237)
Q Consensus       227 ~d  228 (237)
                      .|
T Consensus       304 eD  305 (408)
T TIGR03520       304 ED  305 (408)
T ss_pred             HH
Confidence            87

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=4.3e-15  Score=107.63  Aligned_cols=106  Identities=25%  Similarity=0.353  Sum_probs=92.3

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++.+++++.++.+.|.+.+...+||+|++|+++|+|+..++.+...                             ..
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~-----------------------------~~   52 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA-----------------------------EG   52 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH-----------------------------hc
Confidence            4678899999999999999888999999998899999999999986421                             11


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|..+++.+.+++++.++++.|.+++...+||++++|+++|++|++|
T Consensus        53 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~d  107 (111)
T cd04639          53 GPDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLEN  107 (111)
T ss_pred             CCCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHH
Confidence            1235688889888999999999999999999999999999997799999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.64  E-value=7e-15  Score=105.60  Aligned_cols=101  Identities=23%  Similarity=0.345  Sum_probs=89.7

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++++++++.++.++.+.|.+.+.+.+||+|++|+++|+++..|+.+..                                
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~--------------------------------   49 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS--------------------------------   49 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence            577899999999999999999999999999889999999999998531                                


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                        ..++.++|.+.+..+.+++++.++++.|.+++...+||++++|+++|+|+++|
T Consensus        50 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~  102 (106)
T cd04582          50 --GGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRS  102 (106)
T ss_pred             --ccchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHH
Confidence              13467888777788999999999999999999999999998889999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.63  E-value=7.8e-15  Score=106.08  Aligned_cols=104  Identities=26%  Similarity=0.425  Sum_probs=91.4

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++.+++++.++++.|.+++...+||+|++|++.|+++.+++++...                               
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~-------------------------------   51 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA-------------------------------   51 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh-------------------------------
Confidence            5788999999999999999999999999998899999999999985321                               


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.+++..+.+++++.++++.|.+++.+.+||++++|+++|+|++.|
T Consensus        52 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~d  106 (110)
T cd04605          52 RDKKSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSED  106 (110)
T ss_pred             hCccCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHH
Confidence            0123477888888899999999999999999999999999998899999999876

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.63  E-value=9.1e-15  Score=106.57  Aligned_cols=106  Identities=26%  Similarity=0.290  Sum_probs=89.0

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCC-CCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~-~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      ++.++++++++.++.+.|.+.+ .+.+||+|++|+++|+|+.+|+.+...                             .
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~   52 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT-----------------------------S   52 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH-----------------------------h
Confidence            5788999999999999997664 889999998899999999999986421                             0


Q ss_pred             hhcCCcccccccc--CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          173 KTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       173 ~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .....++.++|.+  .++++.+++++.++++.|.+++.+++||++++|+++|+|+.+|
T Consensus        53 ~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~d  110 (114)
T cd04801          53 QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEAD  110 (114)
T ss_pred             hccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccc
Confidence            1113567888864  3678999999999999999999999999997789999999876

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.63  E-value=3.3e-15  Score=134.23  Aligned_cols=114  Identities=25%  Similarity=0.295  Sum_probs=102.8

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      .+.+++.++|.+  +++++++++++.++.+.|.+++++.+||+|++++++|+||.+|+...                   
T Consensus        86 l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~-------------------  144 (479)
T PRK07807         86 VAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV-------------------  144 (479)
T ss_pred             Hhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC-------------------
Confidence            345677889988  89999999999999999999999999999988999999999999642                   


Q ss_pred             chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                    ....++.++|+++++++++++++.+|+++|.+++.+.+||+|++|+++|+||++|
T Consensus       145 --------------~~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~D  199 (479)
T PRK07807        145 --------------DRFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTG  199 (479)
T ss_pred             --------------ccCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHH
Confidence                          0135689999999999999999999999999999999999998899999999987

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.63  E-value=1.1e-14  Score=104.84  Aligned_cols=103  Identities=28%  Similarity=0.376  Sum_probs=91.4

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++..++++.++.++...|.+.+...+||+|++|+++|+++..|+.+..                                
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~--------------------------------   50 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY--------------------------------   50 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh--------------------------------
Confidence            577899999999999999999999999999889999999999998531                                


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|...+..+++++++.++++.|.+.+..++||++++|+++|++|++|
T Consensus        51 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~  105 (109)
T cd04583          51 KEAKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSS  105 (109)
T ss_pred             hcCCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHH
Confidence            1124678888888899999999999999999999999999998899999999876

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.62  E-value=1.1e-14  Score=106.37  Aligned_cols=108  Identities=27%  Similarity=0.290  Sum_probs=91.8

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+||.+......                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---------------------------~   54 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---------------------------A   54 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence            4678899999999999999999999999998899999999999986421100                           0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC--CcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~iGvIt~~d  228 (237)
                      ....++.++|..+++++.+++++.++++.|.+++...+||+|++  |+++|+||++|
T Consensus        55 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~d  111 (115)
T cd04593          55 GEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTREN  111 (115)
T ss_pred             cccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHH
Confidence            11234778888889999999999999999999999999999876  79999999876

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.62  E-value=1.1e-14  Score=105.94  Aligned_cols=106  Identities=21%  Similarity=0.307  Sum_probs=91.3

Q ss_pred             eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhh
Q 026495           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT  174 (237)
Q Consensus        95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (237)
                      ..+++.+.++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+.....                            ..
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------~~   55 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------LS   55 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC----------------------------CC
Confidence            56789999999999999999999999999889999999999997532100                            11


Q ss_pred             cCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       175 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ...++.++|.+.+..+.+++++.++++.|.+++.+.+||++++|+++|+||.+|
T Consensus        56 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~d  109 (113)
T cd04607          56 LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDD  109 (113)
T ss_pred             cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHH
Confidence            134688899888889999999999999999999999999998899999999876

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=1.2e-14  Score=107.53  Aligned_cols=118  Identities=18%  Similarity=0.138  Sum_probs=90.6

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      ++.++++++++.++++.|.+.+++.+||+|++ |++.|+|+..|++++.........          .+       ... 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~----------~~-------~~~-   63 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP----------GL-------DPL-   63 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc----------ch-------hhh-
Confidence            57789999999999999998899999999987 899999999999874321100000          00       000 


Q ss_pred             hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                      ......+.++|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|=
T Consensus        64 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di  120 (123)
T cd04627          64 YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV  120 (123)
T ss_pred             hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence            000112334677888899999999999999999999999999988999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.61  E-value=1.2e-14  Score=107.25  Aligned_cols=118  Identities=31%  Similarity=0.482  Sum_probs=94.4

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++++.++.++.+.|.+.+++.+||++++|+++|+|+..||.+.........           .+...    .  ..
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~-----------~~~~~----~--~~   65 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRP-----------LRGRL----R--GR   65 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccch-----------hhhhh----h--cc
Confidence            6788999999999999999999999999998899999999999986432111000           00000    0  01


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.++++++++++++.++++.|.+.+.+.+||++++|+++|+|+++|
T Consensus        66 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~d  120 (124)
T cd04600          66 DKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTD  120 (124)
T ss_pred             cccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHH
Confidence            1234688899888999999999999999999999999999998899999999876

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=1.3e-14  Score=105.89  Aligned_cols=111  Identities=28%  Similarity=0.321  Sum_probs=90.3

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++++++.++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.++...... .                    .. ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~-~--------------------~~-~~   59 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLEN-L--------------------DL-ER   59 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCc-h--------------------hH-HH
Confidence            57889999999999999999999999999988999999999999875321100 0                    00 00


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.+++.++.+++++.++++.|.+.+  .+||++++|+++|+||++|
T Consensus        60 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~d  112 (116)
T cd04643          60 LVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRRE  112 (116)
T ss_pred             HhCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHH
Confidence            0135688899888999999999999999998865  5899998899999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=1.7e-14  Score=104.55  Aligned_cols=106  Identities=24%  Similarity=0.315  Sum_probs=91.2

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++.++++.++++.|.+.+++.+||+|++|+++|+++.+|+..+....                            .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------~   53 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE----------------------------S   53 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc----------------------------c
Confidence            577899999999999999999999999999889999999999998642100                            0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.++++++.+++++.++++.|.+++.+.+||+++ |+++|+||+.|
T Consensus        54 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~d  107 (111)
T cd04626          54 FLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKD  107 (111)
T ss_pred             cccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHH
Confidence            0134688889888899999999999999999999999999996 99999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=2.5e-14  Score=103.62  Aligned_cols=108  Identities=30%  Similarity=0.478  Sum_probs=91.4

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++..++++.++.++.+.|.+.+++.+||+|++++++|+++.+|+.++......                          .
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~--------------------------~   55 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA--------------------------S   55 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC--------------------------C
Confidence            57788999999999999999999999999988999999999999864321100                          0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.+++.++.+++++.++++.|.+.+.+++||+++ |+++|+|+..|
T Consensus        56 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~d  109 (113)
T cd04623          56 ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGD  109 (113)
T ss_pred             ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHH
Confidence            1134688889888899999999999999999999999999986 99999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=2.7e-14  Score=101.44  Aligned_cols=91  Identities=21%  Similarity=0.362  Sum_probs=82.9

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      +++.+.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+.                                 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~---------------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK---------------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence            57889999999999999999999999999988999999999999852                                 


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                         .        .+.++.+++++.++++.|.+++.+++||++++|+++|+||++|
T Consensus        49 ---~--------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~d   92 (96)
T cd04614          49 ---S--------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHD   92 (96)
T ss_pred             ---C--------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHH
Confidence               0        1778999999999999999999999999997789999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=3.2e-14  Score=103.14  Aligned_cols=107  Identities=23%  Similarity=0.322  Sum_probs=92.0

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++.+.++.++.+.|.+.+++.+||+|++|+++|+++..|+++.....                            .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~----------------------------~   53 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG----------------------------I   53 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc----------------------------C
Confidence            467889999999999999999999999999889999999999998642110                            1


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.++++.+.+++++.++++.|.+++...+||++++|+++|+++++|
T Consensus        54 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~d  108 (112)
T cd04624          54 DLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRD  108 (112)
T ss_pred             CCccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHH
Confidence            1235678888888999999999999999999999889999997799999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=2.7e-14  Score=103.68  Aligned_cols=107  Identities=22%  Similarity=0.341  Sum_probs=91.3

Q ss_pred             eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhh
Q 026495           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT  174 (237)
Q Consensus        95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (237)
                      +..+.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+.....                           ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~---------------------------~~~   55 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES---------------------------EEL   55 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh---------------------------hhh
Confidence            56789999999999999999999999999889999999999998631100                           011


Q ss_pred             cCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       175 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ...++.++|.+++.++.+++++.++++.|.+++...+||++++|+++|+++..|
T Consensus        56 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~d  109 (113)
T cd04615          56 KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDD  109 (113)
T ss_pred             cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHH
Confidence            235688899888999999999999999999999999999998889999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.59  E-value=4e-14  Score=102.29  Aligned_cols=105  Identities=30%  Similarity=0.369  Sum_probs=90.9

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++.++++.++.+.|.+.+++.+||+++ |+++|+++.+|++++...                             .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~-----------------------------~   51 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIAR-----------------------------G   51 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhc-----------------------------c
Confidence            5778999999999999999999999999998 999999999999864210                             0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|..++.++++++++.++++.|.+.+.+.+||++++|+++|+|+++|
T Consensus        52 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~d  106 (110)
T cd04588          52 LELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTD  106 (110)
T ss_pred             ccccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHH
Confidence            1124677888888899999999999999999999999999997799999999876

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.59  E-value=2.9e-14  Score=103.45  Aligned_cols=108  Identities=31%  Similarity=0.437  Sum_probs=92.7

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      +++++++++++.++.+.|.+.+++.+||+|++|+++|+++..|+.++.....                           .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~   54 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS---------------------------L   54 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence            5788999999999999999999999999998899999999999986421100                           0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~iGvIt~~d  228 (237)
                      ....++.++|.+++.++.+++++.++++.|...+.+.+||+++ +|+++|+++..|
T Consensus        55 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~d  110 (114)
T cd04613          55 YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSD  110 (114)
T ss_pred             cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHH
Confidence            0125688899888999999999999999999999999999987 789999999876

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.58  E-value=1.3e-14  Score=121.90  Aligned_cols=114  Identities=30%  Similarity=0.300  Sum_probs=99.7

Q ss_pred             cccccccccccCc-eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           82 VYTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        82 ~~~v~~im~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      .++++++|.+  + ++++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..|+.++...                 
T Consensus       154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-----------------  214 (268)
T TIGR00393       154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-----------------  214 (268)
T ss_pred             hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc-----------------
Confidence            3688999988  6 8899999999999999999999999999988999999999999864210                 


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEE
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRK  225 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt  225 (237)
                                 ......++.++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+|+
T Consensus       215 -----------~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       215 -----------GGSLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             -----------CCcccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                       011246789999988999999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.58  E-value=1.1e-14  Score=134.80  Aligned_cols=122  Identities=20%  Similarity=0.195  Sum_probs=104.3

Q ss_pred             CCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccccc
Q 026495           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (237)
Q Consensus        78 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  157 (237)
                      ..+..++++|+|++  +..++++++++.++.+.|.+++.+.+||+|++|+++|+|+.+|+.+.....             
T Consensus       442 ~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~-------------  506 (574)
T PRK01862        442 ERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDK-------------  506 (574)
T ss_pred             hHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcc-------------
Confidence            34567899999998  788999999999999999999999999999989999999999998632100             


Q ss_pred             ccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC--CcEEEEEEccc
Q 026495          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GWNYHKRKCSK  228 (237)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~iGvIt~~d  228 (237)
                                    ......++.++|+++++++++++++.++++.|.+++.+.+||+|++  ++++|+||++|
T Consensus       507 --------------~~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~D  565 (574)
T PRK01862        507 --------------RDTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTS  565 (574)
T ss_pred             --------------cccccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHH
Confidence                          0111356889999989999999999999999999999999999865  48999999987

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.58  E-value=3.6e-14  Score=102.40  Aligned_cols=103  Identities=41%  Similarity=0.548  Sum_probs=89.3

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++..+..+.++.++.+.|.+.+...+||+|++|+++|+++.+++.+..                                
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~--------------------------------   50 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET--------------------------------   50 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc--------------------------------
Confidence            577899999999999999999999999999889999999999987421                                


Q ss_pred             hcCCccccccccCceEEcC-CCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRE-TTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ..+.++.++|...+..+.. ++++.++++.|.+.+.+.+||++++|+++|+|+++|
T Consensus        51 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~d  106 (110)
T cd04601          51 DLDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKD  106 (110)
T ss_pred             cCCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhh
Confidence            1135678888776777777 999999999999999999999998899999999876

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=3.9e-14  Score=104.30  Aligned_cols=117  Identities=31%  Similarity=0.396  Sum_probs=93.8

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++.+++++.++.+.|.+.+++.+||++++|+++|+++..++++....... ...       ..          ....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~-~~~-------~~----------~~~~   63 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLS-DNG-------EE----------SLTK   63 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccc-ccc-------cc----------cccc
Confidence            47789999999999999999999999999988999999999999875321100 000       00          0001


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|..+++++.+++++.++++.|.+.+.+.+||++++|+++|+||..|
T Consensus        64 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~d  118 (122)
T cd04803          64 ERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSD  118 (122)
T ss_pred             ccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHH
Confidence            1245688889888999999999999999999999999999997789999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=3.5e-14  Score=107.20  Aligned_cols=129  Identities=22%  Similarity=0.266  Sum_probs=94.6

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhh-HHHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT-FNEVQKLLS  172 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  172 (237)
                      +++++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.........     .+..++.|.. .......+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~   76 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERG-----LPKKSIKMKRKAGQKRYRYV   76 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccc-----cchhhhhhhhhccccccccc
Confidence            5778999999999999999999999999998899999999999987542111000     0000000000 000000011


Q ss_pred             hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .....++.++|.++++.+.+++++.++++.|.+++.+.+||+++ |+++|+|+.+|
T Consensus        77 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~d  131 (135)
T cd04621          77 KEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTD  131 (135)
T ss_pred             ccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHH
Confidence            11245788999888899999999999999999999999999985 99999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.58  E-value=3.7e-14  Score=102.96  Aligned_cols=108  Identities=29%  Similarity=0.329  Sum_probs=92.2

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      +++++++++++.++.+.|.+.+.+.+||+|++|+++|+++..++.+......                           .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~---------------------------~   55 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL---------------------------D   55 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC---------------------------c
Confidence            5778899999999999998888899999998899999999999986432100                           0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.+++..+++++++.++++.|..++...+||++++|+++|+|+..|
T Consensus        56 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~d  110 (114)
T cd04604          56 ILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHD  110 (114)
T ss_pred             cccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHH
Confidence            1124688899888899999999999999999999999999997899999999876

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=3.9e-14  Score=105.25  Aligned_cols=121  Identities=21%  Similarity=0.266  Sum_probs=90.1

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..|+++...........    +.     ..+....   . 
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~----~~-----~~~~~~~---~-   68 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLY----RT-----ITFKELS---E-   68 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcc----cc-----hhhhhhh---h-
Confidence            578899999999999999999999999999889999999999998753211100000    00     0000000   0 


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                       .-....+.|..++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|
T Consensus        69 -~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~d  122 (126)
T cd04642          69 -KFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTD  122 (126)
T ss_pred             -hcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHH
Confidence             001223456677889999999999999999999999999998899999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.58  E-value=3.8e-14  Score=103.43  Aligned_cols=103  Identities=34%  Similarity=0.488  Sum_probs=88.9

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC---CCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  170 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ++.++..++++.++++.|.+.+...+||+|+   +|+++|+++..|++...                             
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~-----------------------------   53 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT-----------------------------   53 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-----------------------------
Confidence            4678899999999999999888899999997   68999999999987421                             


Q ss_pred             HHhhcCCccccccccCceEEcC--CCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          171 LSKTNGKMVGDLMTPAPVVVRE--TTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       171 ~~~~~~~~v~~im~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                         ....++.++|...+..+..  ++++.++++.|.+++.+++||++++|+++|+||++|
T Consensus        54 ---~~~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~d  110 (114)
T cd04602          54 ---DSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSD  110 (114)
T ss_pred             ---ccCCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHH
Confidence               1124588899877777866  999999999999999999999998899999999876

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=2.7e-14  Score=103.75  Aligned_cols=109  Identities=32%  Similarity=0.407  Sum_probs=91.7

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++++......                         ...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~-------------------------~~~   56 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESS-------------------------YHC   56 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhh-------------------------hcc
Confidence            5778999999999999999888889999998899999999999986421100                         001


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.++++.+.+++++.++++.|.+++.+.+||+++ |+++|+||.+|
T Consensus        57 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~d  110 (114)
T cd04629          57 DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRD  110 (114)
T ss_pred             CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHH
Confidence            1245688899888899999999999999999999999999996 99999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.57  E-value=5.1e-14  Score=100.79  Aligned_cols=100  Identities=29%  Similarity=0.434  Sum_probs=88.7

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++++++++.++++.|.+.+.+.+||+| +|+++|+++.+++.+..                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~--------------------------------   48 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH--------------------------------   48 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhccc--------------------------------
Confidence            467899999999999999988989999998 58999999999998531                                


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                       ...++.++|.+++.++++++++.++++.|.+++...+||+++ |+++|+||..|
T Consensus        49 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~  101 (105)
T cd04599          49 -PNRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGT  101 (105)
T ss_pred             -ccCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHH
Confidence             124577889888999999999999999999999999999996 99999999876

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.57  E-value=1.2e-14  Score=108.11  Aligned_cols=108  Identities=23%  Similarity=0.181  Sum_probs=90.4

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++++.++.++++.|.+++.+.+||+|++|+++|+++.+|+++.....                           ..
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~---------------------------~~   55 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG---------------------------KV   55 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh---------------------------cc
Confidence            578899999999999999999999999999889999999999998632110                           01


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHH---------cCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLE---------TKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~---------~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ..+.++.++|.+++.++.+++++.++.+++..         .+...+||++++|+++|+||++|
T Consensus        56 ~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~D  119 (124)
T cd04608          56 QPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKID  119 (124)
T ss_pred             CCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhH
Confidence            23578999999999999999999999996543         35667888887899999999987

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.57  E-value=6.8e-14  Score=101.20  Aligned_cols=104  Identities=28%  Similarity=0.394  Sum_probs=91.0

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++++++.+.++.++.+.|.+.++..+||+|+ |+++|+++..|+.+....                             .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~-----------------------------~   52 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRH-----------------------------G   52 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhc-----------------------------c
Confidence            5788999999999999999889999999998 999999999999864210                             0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.+++..+.+++++.++++.|.+++.+.+||++ +|+++|+||+.|
T Consensus        53 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~d  106 (110)
T cd04595          53 LGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTD  106 (110)
T ss_pred             cccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHH
Confidence            124578889988899999999999999999999999999999 799999999876

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.57  E-value=1.1e-14  Score=109.42  Aligned_cols=116  Identities=20%  Similarity=0.255  Sum_probs=99.0

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      ..++++.+|+.  +++.+.+++++.++.++|.+.+++.+||+++ |+++|-||.+++.+......               
T Consensus        63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~---------------  124 (187)
T COG3620          63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM---------------  124 (187)
T ss_pred             ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---------------
Confidence            56788999999  8999999999999999999999999999996 89999999999997532110               


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                 +......+.++|..++++|+++.++..+.+++..++  .+.|++ +|+++|+||+.|
T Consensus       125 -----------e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e-~G~~vGIITk~D  178 (187)
T COG3620         125 -----------ESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVE-NGKVVGIITKAD  178 (187)
T ss_pred             -----------cchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe-CCceEEEEeHHH
Confidence                       112356789999999999999999999999988765  466775 899999999976

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.57  E-value=6.9e-14  Score=101.48  Aligned_cols=108  Identities=34%  Similarity=0.488  Sum_probs=90.4

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++.++.++.++++.|.+.+.+.+||+++ |+++|+++..|++......+.                          .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~--------------------------~   54 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL--------------------------D   54 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC--------------------------C
Confidence            4678899999999999999888899999997 999999999999742211000                          0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.+++.++.+++++.++++.|.+++.+++||++++|+++|+|+.+|
T Consensus        55 ~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~d  109 (113)
T cd04587          55 PESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTK  109 (113)
T ss_pred             cCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHH
Confidence            0125688899888899999999999999999999999999997799999999876

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.57  E-value=8.7e-14  Score=100.52  Aligned_cols=106  Identities=30%  Similarity=0.398  Sum_probs=91.0

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++++.++.++.+.|.+.+.+.+||+|+ |+++|+++.+|+.++....                            .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~----------------------------~   52 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASG----------------------------P   52 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcC----------------------------C
Confidence            4678999999999999999988999999987 9999999999998642100                            0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.++++.+.+++++.++++.|.+.+.+.+||+|++|+++|+|+.+|
T Consensus        53 ~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~d  107 (111)
T cd04611          53 DLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTD  107 (111)
T ss_pred             CCCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHH
Confidence            0235688889888899999999999999999999999999997799999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=2.6e-14  Score=106.30  Aligned_cols=111  Identities=24%  Similarity=0.347  Sum_probs=87.7

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH-
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS-  172 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  172 (237)
                      ++.++..++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.+....                        ..... 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~------------------------~~~~~~   57 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPI------------------------KRIQEG   57 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhh------------------------HHHHHc
Confidence            36788999999999999998999999999988999999999999852100                        00000 


Q ss_pred             --hhcCCccccccccCceEE------cCCCCHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEccc
Q 026495          173 --KTNGKMVGDLMTPAPVVV------RETTNLEDAARLLLETKYRRLPVVDAD-GWNYHKRKCSK  228 (237)
Q Consensus       173 --~~~~~~v~~im~~~~~~v------~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~iGvIt~~d  228 (237)
                        .....++.++|.++...+      .+++++.++++.|.+++.+++||+|++ |+++|+||++|
T Consensus        58 ~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~d  122 (126)
T cd04640          58 GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSD  122 (126)
T ss_pred             CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHH
Confidence              112356888997654333      368999999999999999999999976 79999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=5.8e-14  Score=103.80  Aligned_cols=119  Identities=28%  Similarity=0.370  Sum_probs=93.0

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      ++.++.++.++.++++.|.+.+...+||+|++ |+++|+|+..|+.+.+..... ...   ...        ..    ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~-~~~---~~~--------~~----~~   65 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEK-FNK---IKT--------GN----GL   65 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccch-hcc---ccc--------cc----cc
Confidence            57788999999999999999999999999987 999999999999865321100 000   000        00    00


Q ss_pred             hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .....++.++|.++++.+++++++.++++.|.+.+.+.+||++++|+++|+||++|
T Consensus        66 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~d  121 (125)
T cd04631          66 EAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERD  121 (125)
T ss_pred             hhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHH
Confidence            01134688888888999999999999999999999999999997799999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=5.5e-14  Score=103.47  Aligned_cols=117  Identities=23%  Similarity=0.365  Sum_probs=93.1

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++.+++++.++.+.|.+.+++.+||+|++|+++|+++..|+++.......        .+  .        ......
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~--------~~--~--------~~~~~~   63 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTS--------VE--D--------QQRTQT   63 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhcccccc--------cc--c--------hhhhhh
Confidence            57889999999999999999999999999988999999999999863211000        00  0        000000


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.+++..+++++++.++++.|.+.+.+.+||++++|+++|++|+.|
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~d  118 (122)
T cd04635          64 KASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHD  118 (122)
T ss_pred             hccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHH
Confidence            1245678888888899999999999999999999999999998899999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.56  E-value=8.3e-14  Score=100.79  Aligned_cols=105  Identities=26%  Similarity=0.329  Sum_probs=88.9

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      ++.+++++.++.++.+.|.+.+.+.+||++++ |+++|+++..|+.+....                             
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~-----------------------------   52 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE-----------------------------   52 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc-----------------------------
Confidence            57889999999999999999899999999988 999999999999874210                             


Q ss_pred             hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .....++.++| .++.++.+++++.++++.|.+++.+.+||++++|+++|+||++|
T Consensus        53 ~~~~~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~d  107 (111)
T cd04590          53 GEEDLDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLED  107 (111)
T ss_pred             CCCcCCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHH
Confidence            00013456665 46788999999999999999999999999998899999999876

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.56  E-value=8.7e-14  Score=99.93  Aligned_cols=101  Identities=32%  Similarity=0.491  Sum_probs=89.3

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++++++.+.++.++.+.|.+.+...+||+|+ ++++|+++..||+..                                 
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~---------------------------------   48 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK---------------------------------   48 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc---------------------------------
Confidence            5788999999999999998888889999997 999999999999842                                 


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.+.+.++.+++++.++++.|.+++...+||++++|+++|+|+..|
T Consensus        49 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~d  103 (107)
T cd04610          49 DPDETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTD  103 (107)
T ss_pred             CccccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHH
Confidence            0124688889888899999999999999999999999999998899999999876

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.56  E-value=1.1e-13  Score=100.18  Aligned_cols=106  Identities=21%  Similarity=0.232  Sum_probs=90.0

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      .++.++.+.++.++.+.|.+.+...++|+|+ |++.|+++.+|+.+......                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~---------------------------~   53 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDG---------------------------L   53 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCC---------------------------C
Confidence            4678899999999999999999999999997 89999999999986421100                           0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.+++..+++++++.++++.|.+++.+.+||++ +|+++|+||.+|
T Consensus        54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~G~it~~d  107 (111)
T cd04589          54 PSSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-GGEVVGVLEQTD  107 (111)
T ss_pred             CCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEee-CCEEEEEEEhHH
Confidence            123568889988899999999999999999999999999998 589999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.56  E-value=3.7e-14  Score=127.40  Aligned_cols=116  Identities=23%  Similarity=0.300  Sum_probs=101.7

Q ss_pred             CCCCcccccccccccCceeEEcCCCCHHHHHHHHHH-----CCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCC
Q 026495           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS  152 (237)
Q Consensus        78 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~-----~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~  152 (237)
                      ..+...+++++|++  ++.++++++++.++.+.|.+     .+...+||+|++++++|+|+.+|++..            
T Consensus       126 l~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a------------  191 (449)
T TIGR00400       126 LSYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA------------  191 (449)
T ss_pred             hCCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC------------
Confidence            44567799999998  89999999999999999975     345678899988999999999999742            


Q ss_pred             cccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                           ..+.+++++|.++++++++++++.++++.|.+++...+||||++|+++|+||.+|
T Consensus       192 ---------------------~~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~D  246 (449)
T TIGR00400       192 ---------------------KPEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDD  246 (449)
T ss_pred             ---------------------CCCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHH
Confidence                                 1135789999988889999999999999999999999999998899999999876

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.3e-13  Score=99.98  Aligned_cols=108  Identities=34%  Similarity=0.545  Sum_probs=90.2

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++.+++++.++.+.|.+.+++.+||+|+ |+++|+++..|++......+.                          .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~--------------------------~   54 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR--------------------------D   54 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC--------------------------C
Confidence            5788999999999999999999999999997 999999999998732110000                          0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|...+.++.+++++.++++.|.+.+.+.+||++++|+++|+|++.|
T Consensus        55 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~d  109 (113)
T cd04622          55 PDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGD  109 (113)
T ss_pred             cccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHH
Confidence            1123488899888999999999999999999999999999987799999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.3e-13  Score=102.57  Aligned_cols=121  Identities=21%  Similarity=0.245  Sum_probs=92.3

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++..+.++.++.++++.|.+.+.+.+||+|++|+++|+++..|+..++........              ..........
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~--------------~~~~~~~~~~   67 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKAR--------------TGDRSGEKER   67 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcc--------------hhhhhhhhhh
Confidence            57789999999999999999999999999988999999999999864321100000              0000000001


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEc--CCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD--ADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~iGvIt~~d  228 (237)
                      ....++.++|..+++++++++++.++++.|.+.+.+.+||++  ++|+++|+||++|
T Consensus        68 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~d  124 (128)
T cd04632          68 MLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKD  124 (128)
T ss_pred             hccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHh
Confidence            123568889988889999999999999999999999999985  3589999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.5e-13  Score=102.99  Aligned_cols=127  Identities=31%  Similarity=0.427  Sum_probs=94.8

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.++........... .+....     +.+ .+....
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~-~~~~~~-----~~~-~~~~~~   74 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVT-LLYSVI-----FLD-ESKIKK   74 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCccccc-cccccc-----ccc-hHHHHH
Confidence            4678999999999999999989999999998899999999999987543211100000 000000     000 111122


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.++++.+.+++++.++++.|.+.+.+.+||+++ |+++|++|..|
T Consensus        75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~d  128 (132)
T cd04636          75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGD  128 (132)
T ss_pred             HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHH
Confidence            2234788899888999999999999999999999999999997 99999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.55  E-value=1.1e-13  Score=100.09  Aligned_cols=106  Identities=30%  Similarity=0.436  Sum_probs=90.3

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++.+.++.++.+.|.+.+.+.+||+|+ |+++|+++..++.+.....+                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~---------------------------~   53 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEG---------------------------L   53 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccC---------------------------C
Confidence            5778999999999999999988999999997 99999999999986321110                           0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|..+++.+.+++++.++++.|.+++.+.+||+++ |+++|+++++|
T Consensus        54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~d  107 (111)
T cd04800          54 DPDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATD  107 (111)
T ss_pred             CccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHH
Confidence            1134688888888999999999999999999999999999986 99999999876

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.55  E-value=5.7e-14  Score=101.57  Aligned_cols=98  Identities=33%  Similarity=0.379  Sum_probs=85.0

Q ss_pred             EcCCCCHHHHHHHHHHCC-----CCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495           98 VKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (237)
Q Consensus        98 v~~~~~l~~~~~~~~~~~-----~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      +.+++++.++++.|.+++     ...+||+|++|+++|+++.+++.+.                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~--------------------------------   49 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA--------------------------------   49 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC--------------------------------
Confidence            567889999999998776     4689999988999999999999852                                


Q ss_pred             hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                       ..+.++.++|.++++.+.+++++.++++.|.+.+.+.+||++++|+++|+|+++|
T Consensus        50 -~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~d  104 (109)
T cd04606          50 -DPDTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDD  104 (109)
T ss_pred             -CCcchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHH
Confidence             0134678888888899999999999999999999999999998899999999876

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.55  E-value=9.6e-14  Score=99.67  Aligned_cols=97  Identities=30%  Similarity=0.281  Sum_probs=86.4

Q ss_pred             eEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhc
Q 026495           96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN  175 (237)
Q Consensus        96 ~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (237)
                      .++++++++.++++.|.+.+...+||+|+ |+++|+++.+|+.+..                                  
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~----------------------------------   48 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT----------------------------------   48 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc----------------------------------
Confidence            46789999999999999999999999997 9999999999998521                                  


Q ss_pred             CCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       176 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ..++.++|.+.+.++.+++++.++++.|.+++...+||++ +|+++|+||.+|
T Consensus        49 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~d  100 (104)
T cd04594          49 YGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDS  100 (104)
T ss_pred             ccchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHH
Confidence            1346778888889999999999999999999999999998 699999999876

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.55  E-value=6.8e-14  Score=105.21  Aligned_cols=125  Identities=33%  Similarity=0.537  Sum_probs=94.5

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHH----
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK----  169 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  169 (237)
                      ++.++.+++++.++.+.|.+++++.+||+|++|+++|+++..|+.+....... ...        ..|........    
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~   73 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTE-RRR--------ARWLDLLAGAEELAA   73 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCc-chh--------hhHHHHhcchHHHHH
Confidence            57889999999999999999999999999988999999999999864321100 000        00100000000    


Q ss_pred             HHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       170 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ........++.++|.++++.+.+++++.++++.|.+.+.+.+||+| +|+++|+||++|
T Consensus        74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~d  131 (135)
T cd04586          74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRAD  131 (135)
T ss_pred             HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHh
Confidence            0001223568899988899999999999999999999999999999 899999999976

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.55  E-value=6e-14  Score=125.97  Aligned_cols=154  Identities=21%  Similarity=0.214  Sum_probs=120.4

Q ss_pred             hhccCCEEEEecCccchhH-HH---hccCCCceEEecCCceeeeehhhhcccCCCCCcccccccccccCceeEEcCCCCH
Q 026495           29 FALQLPCLLLSRPGCRVFS-VL---ATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (237)
Q Consensus        29 i~~~v~~li~~~~~~~v~~-~~---~~~~~~v~v~~~sp~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  104 (237)
                      +..++|++-..  -..+++ +|   .+...++-+++.+ .....     +  ......+++.++|.+  +++++.+++++
T Consensus        40 ~~l~~P~vsa~--mdtvTe~~MAi~~A~~GGigvIh~n-~~i~~-----q--ae~v~~VKv~eim~~--~pvtv~p~~tI  107 (475)
T TIGR01303        40 TGTTIPLVVAN--MTAVAGRRMAETVARRGGIVILPQD-LPIPA-----V--KQTVAFVKSRDLVLD--TPITLAPHDTV  107 (475)
T ss_pred             Cccccceeecc--chhhHHHHHHHHHHHCCCEEEEeCC-CCHHH-----H--HHHHhhcchhhcccc--CCeEECCCCCH
Confidence            34567766543  444543 44   3677788888743 12111     1  122345577788888  78999999999


Q ss_pred             HHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhcCCccccccc
Q 026495          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT  184 (237)
Q Consensus       105 ~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~  184 (237)
                      .++++.|.+.+.+.+||+|+ ++++|+||.+|+...                                 ....+++++|+
T Consensus       108 ~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~---------------------------------~~~~~V~dIMt  153 (475)
T TIGR01303       108 SDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV---------------------------------DRFTQVRDIMS  153 (475)
T ss_pred             HHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC---------------------------------CCCCCHHHHcc
Confidence            99999999999999999884 799999999998642                                 01356999999


Q ss_pred             cCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       185 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ++++++++++++.+|+++|.+++.+++||+|++|+++|+||++|
T Consensus       154 ~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~D  197 (475)
T TIGR01303       154 TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTG  197 (475)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHH
Confidence            99999999999999999999999999999998899999999987

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.3e-13  Score=100.57  Aligned_cols=107  Identities=22%  Similarity=0.388  Sum_probs=87.5

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCC-CCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~-~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      ++..++.+.++.++.+.|.+.+ ...+||+| +|+++|+++..|+++......                           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~---------------------------   53 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK---------------------------   53 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC---------------------------
Confidence            4678899999999999998887 66777777 589999999999986421000                           


Q ss_pred             hhcCCccccccccCceEEcCC--CCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          173 KTNGKMVGDLMTPAPVVVRET--TNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .....++.++|.++++++.++  +++.++++.|.+++...+||+|++|+++|+||++|
T Consensus        54 ~~~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~d  111 (115)
T cd04620          54 DLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAES  111 (115)
T ss_pred             CccccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHH
Confidence            001256888898888889887  78999999999999999999998899999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.54  E-value=4.4e-14  Score=127.67  Aligned_cols=115  Identities=23%  Similarity=0.291  Sum_probs=97.0

Q ss_pred             ccccccccc-CceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC---CCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495           84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        84 ~v~~im~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      +|+++|... ...+++++++++.++++.|.+++++.+||+|+   +|+++|+||..|+....                  
T Consensus        95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~------------------  156 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR------------------  156 (502)
T ss_pred             HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc------------------
Confidence            456666421 13568999999999999999999999999996   58999999999997420                  


Q ss_pred             chhhHHHHHHHHHhhcCCcccccccc--CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                                   ...+.+++++|++  +++++.+++++.+|+++|.++++..+||+|++|+++|+||++|=
T Consensus       157 -------------~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Di  215 (502)
T PRK07107        157 -------------MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDY  215 (502)
T ss_pred             -------------cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHH
Confidence                         1124679999986  67889999999999999999999999999988999999999874

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.54  E-value=1.5e-13  Score=99.29  Aligned_cols=106  Identities=34%  Similarity=0.494  Sum_probs=90.2

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++.++.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+.+.....                            .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~----------------------------~   52 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEG----------------------------R   52 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcC----------------------------c
Confidence            5778999999999999999988999999997 9999999999998642100                            0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .....+.++|.++++++.+++++.++++.|.+.+.+.+||++++|+++|+||..|
T Consensus        53 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~d  107 (111)
T cd04612          53 EATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSD  107 (111)
T ss_pred             ccccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHH
Confidence            0012567788888999999999999999999999999999997799999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.54  E-value=1.5e-13  Score=100.70  Aligned_cols=117  Identities=35%  Similarity=0.478  Sum_probs=92.5

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++.+.++.++++.|.+.+...+||+|+ |+++|+++..++.+..........          .++       ....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~----------~~~-------~~~~   63 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLD----------IWE-------LYYL   63 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhccccccc----------chh-------hhhh
Confidence            4678999999999999999999999999997 999999999999875321110000          000       0000


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.+++.++++++++.++++.|.+.+.+.+||++++|+++|+||+.|
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~d  118 (122)
T cd04585          64 LSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESD  118 (122)
T ss_pred             hcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHH
Confidence            1135678889888999999999999999999999999999997799999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.8e-13  Score=99.17  Aligned_cols=107  Identities=25%  Similarity=0.418  Sum_probs=88.1

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      +++++++++++.++.+.|.+++...++|.+ +|+++|+++.+|+++.....+                          ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~--------------------------~~   54 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHG--------------------------AG   54 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcC--------------------------Cc
Confidence            577899999999999999888877777766 599999999999986421100                          00


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|..++.++.+++++.++++.|.+++...+||++ +|+++|+||++|
T Consensus        55 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~d  108 (112)
T cd04625          55 VLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHD  108 (112)
T ss_pred             hhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHH
Confidence            113568899988888999999999999999999999999998 699999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.53  E-value=1e-13  Score=124.47  Aligned_cols=112  Identities=31%  Similarity=0.484  Sum_probs=99.2

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC---CcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      +.++.|.+  ++.++++++++.++++.|.+++++.+||+|++   ++++|+|+.+|++...                   
T Consensus        81 ~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-------------------  139 (450)
T TIGR01302        81 RAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK-------------------  139 (450)
T ss_pred             cccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh-------------------
Confidence            55667877  79999999999999999999999999999987   7999999999997421                   


Q ss_pred             hhhHHHHHHHHHhhcCCccccccc-cCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                                   ....++.++|. .+++++++++++.++++.|.+++.+.+||+|++|+++|+||++|=
T Consensus       140 -------------~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DI  196 (450)
T TIGR01302       140 -------------DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDI  196 (450)
T ss_pred             -------------cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHh
Confidence                         12457889998 488999999999999999999999999999999999999998763

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=2.6e-13  Score=98.32  Aligned_cols=107  Identities=29%  Similarity=0.397  Sum_probs=89.4

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++..|+++.......                          .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~--------------------------~   54 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNL--------------------------K   54 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccC--------------------------C
Confidence            4678999999999999999999999999996 599999999999864211100                          0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.++++.+.+++++.++++.|.+++.+.+||+++ ++++|+|+++|
T Consensus        55 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~d  108 (112)
T cd04802          55 PREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-DELVGIVTTTD  108 (112)
T ss_pred             cccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-CEEEEEEEhhh
Confidence            1235688889888899999999999999999999999999985 49999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.52  E-value=2.1e-13  Score=123.57  Aligned_cols=111  Identities=33%  Similarity=0.446  Sum_probs=99.5

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (237)
                      .++++|.+  ++.++++++++.++++.|.+++++.+||+|++++++|+|+.+|+....                      
T Consensus        88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~----------------------  143 (486)
T PRK05567         88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET----------------------  143 (486)
T ss_pred             hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc----------------------
Confidence            46778888  899999999999999999999999999999889999999999997421                      


Q ss_pred             HHHHHHHHHhhcCCccccccc-cCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          164 FNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                ....++.++|. ++++++++++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus       144 ----------~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~D  199 (486)
T PRK05567        144 ----------DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKD  199 (486)
T ss_pred             ----------cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHH
Confidence                      12357888997 67889999999999999999999999999999999999999887

>PRK11573 hypothetical protein; Provisional

Probab=99.52  E-value=1.2e-13  Score=122.58  Aligned_cols=131  Identities=14%  Similarity=0.023  Sum_probs=107.8

Q ss_pred             eehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCC
Q 026495           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGS  146 (237)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~  146 (237)
                      +..++..  ...+.+.+|+++|+|+.++..++.+++++++.+.+.+++++++||++++ +.++|+++.+|++....... 
T Consensus       174 e~~mi~~--vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-  250 (413)
T PRK11573        174 NQDMLLS--VLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-  250 (413)
T ss_pred             HHHHHHH--HhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-
Confidence            4444444  5678899999999999999999999999999999999999999999765 78999999999986321000 


Q ss_pred             CCCCCCcccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEc
Q 026495          147 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKC  226 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~  226 (237)
                                                ......+.+++ +++.+|++++++.++++.|++++.+...|+|++|...|+||.
T Consensus       251 --------------------------~~~~~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTl  303 (413)
T PRK11573        251 --------------------------EFTKENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTV  303 (413)
T ss_pred             --------------------------cCCHHHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeH
Confidence                                      00012234555 467899999999999999999999999999999999999998


Q ss_pred             cc
Q 026495          227 SK  228 (237)
Q Consensus       227 ~d  228 (237)
                      .|
T Consensus       304 eD  305 (413)
T PRK11573        304 ED  305 (413)
T ss_pred             HH
Confidence            87

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.51  E-value=3.9e-13  Score=121.60  Aligned_cols=112  Identities=28%  Similarity=0.346  Sum_probs=98.1

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC---CcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      ..++.|..  ++.++++++++.++.++|.+.+++.+||+|++   ++++|+|+.+|+...                    
T Consensus        97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~--------------------  154 (495)
T PTZ00314         97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV--------------------  154 (495)
T ss_pred             cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc--------------------
Confidence            34556777  78999999999999999999999999999873   799999999999732                    


Q ss_pred             hhhHHHHHHHHHhhcCCcccccccc--CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                                  .....++.++|++  ++.++++++++.+++++|.+++.+.+||+|++++++|+||++|=
T Consensus       155 ------------~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DI  213 (495)
T PTZ00314        155 ------------KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDL  213 (495)
T ss_pred             ------------ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHh
Confidence                        1124679999987  78899999999999999999999999999988999999999874

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=3.3e-13  Score=99.34  Aligned_cols=117  Identities=28%  Similarity=0.377  Sum_probs=91.7

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++++++++.++.+.|.+.+++.+||+|+ |+++|+++..++.+..... ..           ..++...+.     .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~-~~-----------~~~~~~~~~-----~   63 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPF-LG-----------TAGETEKDL-----A   63 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHH-hc-----------cccchHHHH-----H
Confidence            4778999999999999999999999999996 9999999999998642210 00           000000000     0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|..+++.+.+++++.++++.|.+++...+||++++|+++|++++.|
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~d  118 (122)
T cd04637          64 TLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKD  118 (122)
T ss_pred             HHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHH
Confidence            1124678888888999999999999999999999999999997799999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.50  E-value=2.4e-13  Score=123.11  Aligned_cols=106  Identities=22%  Similarity=0.309  Sum_probs=94.5

Q ss_pred             ccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC---CCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHH
Q 026495           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN  165 (237)
Q Consensus        89 m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (237)
                      |.+  +++++++++++.++.+.|.+++++.+||+|+   +|+++|+||.+|+....                        
T Consensus       106 mi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------------------------  159 (505)
T PLN02274        106 FVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------------------------  159 (505)
T ss_pred             ccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------------------------
Confidence            666  7999999999999999999999999999987   48999999999997421                        


Q ss_pred             HHHHHHHhhcCCccccccccC--ceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          166 EVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       166 ~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                              ..+.++.++|+++  ++++++++++.+|+++|.+++.+.+||+|++++++|+||++|
T Consensus       160 --------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~D  216 (505)
T PLN02274        160 --------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTD  216 (505)
T ss_pred             --------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHH
Confidence                    1246799999876  779999999999999999999999999998899999999877

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.49  E-value=5.1e-13  Score=98.03  Aligned_cols=116  Identities=30%  Similarity=0.402  Sum_probs=91.7

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++.++++.++...|.+.+++.+||+|++|+++|+++..++.+..........                 .... ..
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-----------------~~~~-~~   63 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS-----------------EHEL-YL   63 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch-----------------hhhh-hh
Confidence            47789999999999999999999999999988999999999999864211000000                 0000 01


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.+++.++.+++++.++++.|.+++...+||+++ |+++|+++.+|
T Consensus        64 ~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~d  117 (121)
T cd04584          64 LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETD  117 (121)
T ss_pred             hcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHH
Confidence            1235688889888999999999999999999999999999985 99999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=6.7e-13  Score=95.35  Aligned_cols=101  Identities=33%  Similarity=0.500  Sum_probs=87.6

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++..+.++.+++..|.+.+++.+||++++++++|+++.+++....                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~--------------------------------   49 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP--------------------------------   49 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence            467889999999999999998899999999889999999999997420                                


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                       ...++.++|..++.++.+++++.++++.|.+++.+.+||++ +|+++|+|+..|
T Consensus        50 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d  102 (106)
T cd04638          50 -EEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVAD  102 (106)
T ss_pred             -ccchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHH
Confidence             12346677878888999999999999999999999999998 589999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.49  E-value=2.7e-13  Score=124.81  Aligned_cols=172  Identities=24%  Similarity=0.252  Sum_probs=120.0

Q ss_pred             CCCceEEecCCceeeeehhhhcc--cCCCCC--cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcE
Q 026495           53 SDRVSALRRSSAVFASGTLTANS--AAPSSG--VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (237)
Q Consensus        53 ~~~v~v~~~sp~~~~~~~~~~~~--~~~~~~--~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~  128 (237)
                      ..+++.+.++|.+..++.+....  .+....  ..+++++|.+  ++.++++++++.+|++.|.+++++.+||+|++|++
T Consensus        34 ~~~v~~r~~~~~~~~e~vl~~~~~~~p~ll~~~~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l  111 (546)
T PRK14869         34 GNYIPARLGELNPETKFVLDYFGVEAPELIEDVKPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKL  111 (546)
T ss_pred             CcEEEeeCCCCCHHHHHHHHHhCCCchhhhhccCCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEE
Confidence            33566677777663333222211  111111  3689999998  89999999999999999999999999999988999


Q ss_pred             EEEEehHhHhhhccccCCC----C---------------------CCC----Cc--------------cc----ccccc-
Q 026495          129 VGLVSDYDLLALDSISGSG----R---------------------ADN----SM--------------FP----EVDST-  160 (237)
Q Consensus       129 ~Givt~~dl~~~~~~~~~~----~---------------------~~~----~~--------------~~----~~~~~-  160 (237)
                      +|+|+..|+.+........    .                     ...    .+              ..    -.++. 
T Consensus       112 ~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~  191 (546)
T PRK14869        112 LGLVSLSDLARAYMDILDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE  191 (546)
T ss_pred             EEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH
Confidence            9999999998754321100    0                     000    00              00    00011 


Q ss_pred             -----------------------------------------hhhHHHHHHHHHhhcCCccccccc-cCceEEcCCCCHHH
Q 026495          161 -----------------------------------------WKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLED  198 (237)
Q Consensus       161 -----------------------------------------~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~  198 (237)
                                                               +.+++....+   ....+++++|+ +++.++++++++.+
T Consensus       192 d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l---~~~~~V~~iM~~~~~~~~~~~~~~~~  268 (546)
T PRK14869        192 DIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLI---NQSIPVSYIMTTEDLVTFSKDDYLED  268 (546)
T ss_pred             HHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHh---hcCCCHHHhccCCCcEEECCCCcHHH
Confidence                                                     1112222211   23568999999 88999999999999


Q ss_pred             HHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          199 AARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       199 a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                      +.+.|.+++++.+||+|++|+++|+||++|-
T Consensus       269 ~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl  299 (546)
T PRK14869        269 VKEVMLKSRYRSYPVVDEDGKVVGVISRYHL  299 (546)
T ss_pred             HHHHHHhcCCCceEEEcCCCCEEEEEEHHHh
Confidence            9999999999999999988999999998764

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=4.5e-13  Score=98.43  Aligned_cols=116  Identities=26%  Similarity=0.347  Sum_probs=91.3

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++.+++++.++.+.|.+.+.+.+||+|+ |+++|+++..++.+........             |.. .   .....
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~-------------~~~-~---~~~~~   63 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPL-------------VRD-R---HQERR   63 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhc-------------ccc-h---hhhhh
Confidence            4678999999999999999999999999996 9999999999998643211000             000 0   00001


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|..++..+.+++++.++++.|.+.+.+.+||+++ |+++|+|+.+|
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~d  117 (121)
T cd04633          64 IRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTD  117 (121)
T ss_pred             hhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHH
Confidence            1234677888888999999999999999999999999999996 99999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=1.2e-12  Score=93.79  Aligned_cols=108  Identities=44%  Similarity=0.602  Sum_probs=90.2

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++.+.++.++.+.|.+.+...+||++++++++|+++.+|+.+......                           .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~   54 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG---------------------------L   54 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc---------------------------C
Confidence            4678899999999999999988999999998899999999999986421100                           0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .....+.++|..++..+.+++++.++++.|.+.+.+.+||++++|+++|+++.+|
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~d  109 (113)
T cd02205          55 DPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSD  109 (113)
T ss_pred             CccccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHH
Confidence            0011256778888889999999999999999999999999998899999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.48  E-value=1.7e-13  Score=121.46  Aligned_cols=119  Identities=23%  Similarity=0.348  Sum_probs=105.3

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      +-..++++++..  +.+++++..++.+|...|.+.+.+.+.++++++...||||.+|+.......+              
T Consensus       146 ~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g--------------  209 (610)
T COG2905         146 FILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG--------------  209 (610)
T ss_pred             HHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC--------------
Confidence            445678888888  7999999999999999999999999999998999999999999997533222              


Q ss_pred             chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                   .....+|+++|+.++.+|+..+.+.+|+-.|..++++++||++ +|+++|+||.+|
T Consensus       210 -------------~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~d  264 (610)
T COG2905         210 -------------RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTD  264 (610)
T ss_pred             -------------CCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHH
Confidence                         2335789999999999999999999999999999999999997 799999999876

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.47  E-value=9.3e-13  Score=94.98  Aligned_cols=96  Identities=26%  Similarity=0.370  Sum_probs=85.4

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC---CCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  170 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ....+.+++++.++.+.+.+.+...+||+|+   +|+++|+|+.+|+.+..                             
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~-----------------------------   53 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL-----------------------------   53 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH-----------------------------
Confidence            5678899999999999999998889999997   68999999999998531                             


Q ss_pred             HHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       171 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                       .   .     +|.+++.++++++++.++++.|.+++.+.+||++ +|+++|+|+++|
T Consensus        54 -~---~-----~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~d  101 (105)
T cd04591          54 -K---N-----YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKD  101 (105)
T ss_pred             -H---H-----hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhh
Confidence             0   1     7878888999999999999999999999999996 789999999976

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.47  E-value=8e-13  Score=95.17  Aligned_cols=105  Identities=25%  Similarity=0.265  Sum_probs=86.4

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.+++.++++.++.+.|.+.+.+.+||+|+ |+++|+++..|+.+......                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~---------------------------~   53 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGK---------------------------A   53 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccc---------------------------c
Confidence            4678899999999999999999999999997 99999999999987421100                           0


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.+++..+++++++.+++++|.+ .. .+||++++|+++|+||++|
T Consensus        54 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~d  106 (110)
T cd04609          54 KFSLPVREVMGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRAD  106 (110)
T ss_pred             ccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHH
Confidence            01246778888888899999999999999988 43 4788887899999999876

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.47  E-value=6.2e-13  Score=118.87  Aligned_cols=129  Identities=25%  Similarity=0.244  Sum_probs=107.0

Q ss_pred             eehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEc-CCCcEEEEEehHhHhhhccccCC
Q 026495           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGS  146 (237)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~~~~~~~~~  146 (237)
                      +..++..  ...+.+.+|+++|+|+.++..++.+.+++++.+.+.+++++++||++ +.+.++|+++.+|++......  
T Consensus       193 E~~mi~~--v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~--  268 (429)
T COG1253         193 EREMINN--VLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG--  268 (429)
T ss_pred             HHHHHHH--HhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC--
Confidence            4444444  56788999999999999999999999999999999999999999999 448899999999999742111  


Q ss_pred             CCCCCCcccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEc
Q 026495          147 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKC  226 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~  226 (237)
                                                 .........+ .+++.|++++++.++++.|++.+.+...|+|++|.+.|+||.
T Consensus       269 ---------------------------~~~~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTl  320 (429)
T COG1253         269 ---------------------------QSDLDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTL  320 (429)
T ss_pred             ---------------------------ccccchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEH
Confidence                                       0001122222 378899999999999999999999999999999999999998


Q ss_pred             cc
Q 026495          227 SK  228 (237)
Q Consensus       227 ~d  228 (237)
                      .|
T Consensus       321 eD  322 (429)
T COG1253         321 ED  322 (429)
T ss_pred             HH
Confidence            87

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.45  E-value=2.9e-12  Score=93.34  Aligned_cols=109  Identities=39%  Similarity=0.531  Sum_probs=93.4

Q ss_pred             cccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHH
Q 026495           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV  167 (237)
Q Consensus        88 im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (237)
                      +|.+  .++++.++.++.++...|.+++...+||++. ++++|++|.+|+.+.....                       
T Consensus         4 ~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~-----------------------   57 (117)
T COG0517           4 IMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAG-----------------------   57 (117)
T ss_pred             cccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcc-----------------------
Confidence            4445  7899999999999999999999999999984 4899999999999753211                       


Q ss_pred             HHHHHhhcCC-ccccccccCceEEcCCCCHHHHHHHHHH-cCCcEEEEEcCCC-cEEEEEEccc
Q 026495          168 QKLLSKTNGK-MVGDLMTPAPVVVRETTNLEDAARLLLE-TKYRRLPVVDADG-WNYHKRKCSK  228 (237)
Q Consensus       168 ~~~~~~~~~~-~v~~im~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~~-~~iGvIt~~d  228 (237)
                            .... ++.++|..++.++.++.++.++++.|.+ .+++.+||+++++ +++|++|++|
T Consensus        58 ------~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~d  115 (117)
T COG0517          58 ------GKRLLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSD  115 (117)
T ss_pred             ------CCccccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHH
Confidence                  1112 5888998888999999999999999999 6999999999775 9999999876

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.44  E-value=1.5e-12  Score=95.37  Aligned_cols=110  Identities=26%  Similarity=0.358  Sum_probs=88.0

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCC-CCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~-~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      +++++++++++.++.+.|...+ ++.+||+|+ |+++|+++..|+.++.....                      ..  .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~----------------------~~--~   56 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPY----------------------GR--A   56 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchh----------------------hH--H
Confidence            4678899999999999998876 889999998 99999999999986421000                      00  0


Q ss_pred             hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCc---EEEEEcCCCcEEEEEEccc
Q 026495          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR---RLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVvd~~~~~iGvIt~~d  228 (237)
                      .....++.++|.++++.+.+++++.++++.|.+++..   ..+|++++|+++|+|+..|
T Consensus        57 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~d  115 (119)
T cd04598          57 LYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKD  115 (119)
T ss_pred             HHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHH
Confidence            0124568899988899999999999999999988753   3468887899999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.1e-12  Score=98.26  Aligned_cols=133  Identities=28%  Similarity=0.400  Sum_probs=94.9

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccC--CCCCCCCcccccccchhh---HHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG--SGRADNSMFPEVDSTWKT---FNEVQ  168 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~  168 (237)
                      +++++++++++.++.+.|.+.+++.+||+|+ |+++|+++..|+.+++....  .....++..........+   ..++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            5778999999999999999999999999997 99999999999987543221  000000100000000000   00111


Q ss_pred             HHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          169 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       169 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .........++.++|..+++++.+++++.++++.|.+.+...+||+++ |+++|+++.+|
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~d  139 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGD  139 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHH
Confidence            111112345788899888999999999999999999999999999986 99999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.43  E-value=1.1e-12  Score=118.20  Aligned_cols=117  Identities=24%  Similarity=0.268  Sum_probs=96.8

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      +..++++++|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++......              
T Consensus       332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------  395 (454)
T TIGR01137       332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK--------------  395 (454)
T ss_pred             hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC--------------
Confidence            567889999988  7999999999999999999999999999998899999999999986421100              


Q ss_pred             chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                   .....++.++|.+++.++++++++.++++.|.+++  . +||+++|+++|+||++|
T Consensus       396 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~--~-~vV~~~g~liGvvt~~d  448 (454)
T TIGR01137       396 -------------ANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNS--S-AIVTEEGKPIGVVTKID  448 (454)
T ss_pred             -------------CCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHCC--e-eEEEECCEEEEEEEHHH
Confidence                         01234688999888889999999999999998864  3 44444799999999876

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.41  E-value=2.8e-14  Score=120.88  Aligned_cols=191  Identities=19%  Similarity=0.122  Sum_probs=139.7

Q ss_pred             CeeeecceeccccccCCCCCCCcchhhhhccCCEEEEecC---------ccchhHHHhccCCCceEEecCCceeeeehhh
Q 026495            2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRP---------GCRVFSVLATSSDRVSALRRSSAVFASGTLT   72 (237)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~v~~li~~~~---------~~~v~~~~~~~~~~v~v~~~sp~~~~~~~~~   72 (237)
                      |++++|++.++..+-+.+.|+.|...++.+++--+.--.+         ..++...+....+..++.+      .+..++
T Consensus       118 erva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~~~~~~~~s~EElR~~v~~~~~e~~~~~------~~rdmL  191 (423)
T COG4536         118 ERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVNESGSEGSVNK------IDRDML  191 (423)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccCHHHHHHHHHHhhccccccc------ccHHHH
Confidence            6789999999999999999999988887665533321111         1111122222233333322      011111


Q ss_pred             hcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCC
Q 026495           73 ANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADN  151 (237)
Q Consensus        73 ~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~  151 (237)
                      ..  ...+++++|.|+|.||.++..++.+++.+++.+.+....+.++|+..++ +.++|+++.+|+++++...+.     
T Consensus       192 ~g--vLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-----  264 (423)
T COG4536         192 LG--VLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-----  264 (423)
T ss_pred             hc--ccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-----
Confidence            11  4677899999999999999999999999999999999999999999765 679999999999986432210     


Q ss_pred             CcccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                            .....+..+. ..|++|++.+++.+-+..|.+++-+...|||++|.+.|+||..|
T Consensus       265 ----------------------~~k~d~~~~a-~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLED  318 (423)
T COG4536         265 ----------------------FTKEDILRAA-DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLED  318 (423)
T ss_pred             ----------------------ccHhHHHHHh-cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHH
Confidence                                  0011222222 45789999999999999999999999999999999999999887

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.33  E-value=1.9e-11  Score=92.19  Aligned_cols=108  Identities=24%  Similarity=0.281  Sum_probs=79.5

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++.+++++.++++.|.+.+...+||+|++|+++|+||.+|++++..........  ..              ..+..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~--~~--------------~~~~~   65 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQ--PE--------------DETKQ   65 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccc--cc--------------hhhcc
Confidence            578899999999999999999999999999889999999999999754321110000  00              00000


Q ss_pred             hcCCccccc---------cccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC
Q 026495          174 TNGKMVGDL---------MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD  217 (237)
Q Consensus       174 ~~~~~v~~i---------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  217 (237)
                      .....+.++         |..+++++.+++++.+|++.|.+++++.+||++++
T Consensus        66 ~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          66 TNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             cccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence            001122333         45678899999999999999999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.33  E-value=5.8e-12  Score=111.88  Aligned_cols=114  Identities=33%  Similarity=0.371  Sum_probs=101.7

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHC-----CCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  154 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~  154 (237)
                      ...-+++.+|+.  +++.++++.|+.+++..+++.     ....++|+|+++++.|+++.++++..              
T Consensus       129 y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a--------------  192 (451)
T COG2239         129 YPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA--------------  192 (451)
T ss_pred             CChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC--------------
Confidence            345588999999  999999999999999999853     45789999999999999999999842              


Q ss_pred             cccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                         .+..+++++|.+.+..+.+++..+++.+++.+++.-.+||||++++++|+||..|
T Consensus       193 -------------------~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDD  247 (451)
T COG2239         193 -------------------EPDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDD  247 (451)
T ss_pred             -------------------CcHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHH
Confidence                               2357899999999999999999999999999999999999999999999999765

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.19  E-value=1.3e-11  Score=113.79  Aligned_cols=182  Identities=17%  Similarity=0.253  Sum_probs=126.9

Q ss_pred             hhhhhccCCEEEEecCccchhHHH--hccCCCceEEecCCce-eeeehhhhcccCCCCCccccccccc-ccCceeEEcCC
Q 026495           26 RTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPT  101 (237)
Q Consensus        26 ~~ai~~~v~~li~~~~~~~v~~~~--~~~~~~v~v~~~sp~~-~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~  101 (237)
                      ..|++.+++++++++ +..+.+.+  .+...+++++. +|.+ +...+.+..       ..+|+++|+ +  ++++++++
T Consensus       195 ~~ai~~~~~~lIlt~-g~~~~~~v~~la~~~~i~ii~-t~~dt~~t~~~l~~-------~~~V~~iM~~~--~~~~~~~~  263 (546)
T PRK14869        195 LAAIEAGVRLLIITG-GAPVSEDVLELAKENGVTVIS-TPYDTFTTARLINQ-------SIPVSYIMTTE--DLVTFSKD  263 (546)
T ss_pred             HHHHHcCCCEEEECC-CCCCCHHHHHHHHhCCCeEEE-ecccHHHHHHHhhc-------CCCHHHhccCC--CcEEECCC
Confidence            368999999999998 66766655  45567899999 8888 766655554       348999999 6  79999999


Q ss_pred             CCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCC--CC-CCCCcccccc--cchhhHHHHHHHHHhhcC
Q 026495          102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS--GR-ADNSMFPEVD--STWKTFNEVQKLLSKTNG  176 (237)
Q Consensus       102 ~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~--~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  176 (237)
                      +++.++.+.|.+++++.+||+|++|+++|++|.+|+.+.....-.  .. .........+  +.++.+          ..
T Consensus       264 ~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~ii----------DH  333 (546)
T PRK14869        264 DYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEII----------DH  333 (546)
T ss_pred             CcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEe----------cC
Confidence            999999999999999999999999999999999999974221000  00 0000000000  000000          12


Q ss_pred             CccccccccCceEE---cCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          177 KMVGDLMTPAPVVV---RETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       177 ~~v~~im~~~~~~v---~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                      .+++++++..+..+   +...+..-+.++|.+.++...|++. ..-+.|+++-++.
T Consensus       334 H~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~  388 (546)
T PRK14869        334 HRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLL  388 (546)
T ss_pred             CccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcC
Confidence            24566776665444   4466677888999999988777765 4567888865543

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.17  E-value=3.7e-11  Score=96.19  Aligned_cols=120  Identities=22%  Similarity=0.300  Sum_probs=102.7

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCccccc
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  157 (237)
                      ....++|+++|.|+....++..+.++.+.+..+.+..++++||+.++ +.+.|++..+||++++...             
T Consensus        63 ~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~-------------  129 (293)
T COG4535          63 DIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD-------------  129 (293)
T ss_pred             HHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC-------------
Confidence            34567999999999899999999999999999999999999999654 7899999999999753211             


Q ss_pred             ccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                      ...-.+.+++ ++..+|+++..+...++-|....++...|+|+.|.+.|+||..|
T Consensus       130 ----------------~~~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIED  183 (293)
T COG4535         130 ----------------AEPFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIED  183 (293)
T ss_pred             ----------------cccccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHH
Confidence                            1123466655 56778999999999999999999999999999999999999876

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.12  E-value=1.7e-10  Score=73.60  Aligned_cols=54  Identities=46%  Similarity=0.722  Sum_probs=51.0

Q ss_pred             ccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        85 v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      |+++|.+  +++++++++++.++++.|.+++.+++||+|++|+++|++|.+||+++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~   54 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKA   54 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhh
Confidence            4688998  89999999999999999999999999999999999999999999974

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=99.08  E-value=1.6e-10  Score=103.82  Aligned_cols=152  Identities=22%  Similarity=0.244  Sum_probs=113.0

Q ss_pred             CCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-----CcEEEEEehHhHhhhccccCCCCCCC
Q 026495           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLALDSISGSGRADN  151 (237)
Q Consensus        77 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-----~~~~Givt~~dl~~~~~~~~~~~~~~  151 (237)
                      ...+++++++|+|++  ++++++.-+.+....+.++.+.++.+||+|+.     +++.|+|-+++++.++..+-+....+
T Consensus       576 e~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~  653 (762)
T KOG0474|consen  576 EPYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESR  653 (762)
T ss_pred             chHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCc
Confidence            455788899999999  89999999999999999999999999999962     47889999999987655443322211


Q ss_pred             Ccc--c--------ccccchhhHHHHHHH-HHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcE
Q 026495          152 SMF--P--------EVDSTWKTFNEVQKL-LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWN  220 (237)
Q Consensus       152 ~~~--~--------~~~~~~~~~~~~~~~-~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~  220 (237)
                      .-.  +        +...+-..++++... .+...-..+..+|.+.|++|.+++++.+++.+|.+-+.+++.||+..+++
T Consensus       654 ~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~  733 (762)
T KOG0474|consen  654 STFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRV  733 (762)
T ss_pred             cccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCce
Confidence            111  0        011111111111111 11122346778899999999999999999999999999999999988999


Q ss_pred             EEEEEcccCC
Q 026495          221 YHKRKCSKGG  230 (237)
Q Consensus       221 iGvIt~~d~~  230 (237)
                      +|++|++|--
T Consensus       734 ~gilTR~D~~  743 (762)
T KOG0474|consen  734 VGILTRKDLA  743 (762)
T ss_pred             eEEEehhhhh
Confidence            9999999853

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.98  E-value=9.7e-10  Score=70.06  Aligned_cols=50  Identities=40%  Similarity=0.585  Sum_probs=46.9

Q ss_pred             cccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       179 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ++++|.++++++++++++.++++.|.+++++.+||+|++|+++|+||.+|
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~d   50 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSD   50 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHH
Confidence            35789999999999999999999999999999999998999999999876

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.92  E-value=1.6e-08  Score=88.52  Aligned_cols=101  Identities=21%  Similarity=0.251  Sum_probs=85.8

Q ss_pred             eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhh
Q 026495           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT  174 (237)
Q Consensus        95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (237)
                      .....++.+..++...|...+...+.|+|+++++.|+++.+++..+..                                
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------------------  299 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK--------------------------------  299 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh--------------------------------
Confidence            344566778999999999999999999999999999999999875321                                


Q ss_pred             cCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       175 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....+.+.+....+++.+++++.+++..|.+++.. +||+|++|+++|+|++.+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~  352 (363)
T TIGR01186       300 KAQGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGS  352 (363)
T ss_pred             cCCchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHH
Confidence            12356777777788999999999999999999998 999999999999999764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.92  E-value=1.3e-08  Score=90.20  Aligned_cols=113  Identities=21%  Similarity=0.170  Sum_probs=90.0

Q ss_pred             ccccccccccCc-eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccch
Q 026495           83 YTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (237)
Q Consensus        83 ~~v~~im~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (237)
                      .++.++|.+... .+...++.+..+++..|...+.+.++|+|+++++.|+++.+++.+...                   
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------------  334 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT-------------------  334 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh-------------------
Confidence            456677754101 122346678899999999999999999999999999999999975321                   


Q ss_pred             hhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                   ....+.+.+.....++.+++++.+++..+.+.... +||||++|+++|+|++.+
T Consensus       335 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~  387 (400)
T PRK10070        335 -------------QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGM  387 (400)
T ss_pred             -------------cCCchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHH
Confidence                         12346666777788999999999999999998876 999999999999999764

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.91  E-value=7.2e-09  Score=91.00  Aligned_cols=116  Identities=29%  Similarity=0.354  Sum_probs=90.2

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      .+..+..++++.+|++.|.+.+++.+||+|..|+.+|.++..|+........+.......             +....  
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~-------------l~~~~--  302 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSC-------------LSEAL--  302 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhH-------------HHHHh--
Confidence            488899999999999999999999999999999999999999998765444332211100             00000  


Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                          .....-...+.++.++.+|.+++..|..++.+++.|||++|.++|+||.+|
T Consensus       303 ----~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsD  353 (381)
T KOG1764|consen  303 ----SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSD  353 (381)
T ss_pred             ----hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHH
Confidence                011111223688999999999999999999999999998899999999876

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.84  E-value=1.7e-08  Score=82.08  Aligned_cols=89  Identities=16%  Similarity=0.235  Sum_probs=76.9

Q ss_pred             hccCCCceEEecCCce-eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcE
Q 026495           50 ATSSDRVSALRRSSAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (237)
Q Consensus        50 ~~~~~~v~v~~~sp~~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~  128 (237)
                      +.+..+.|+..+...- +.+...+..+......+.+|+++|++  ++++++.++.+.||+++|..++..++.|+|.+|++
T Consensus       200 ~~~i~GaPVvd~dk~vGiit~~dI~~aia~g~~~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkp  277 (294)
T COG2524         200 EKGIRGAPVVDDDKIVGIITLSDIAKAIANGNLDAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKP  277 (294)
T ss_pred             HcCccCCceecCCceEEEEEHHHHHHHHHcCCccccHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcE
Confidence            5666677888755444 66677777666777788899999999  89999999999999999999999999999999999


Q ss_pred             EEEEehHhHhhh
Q 026495          129 VGLVSDYDLLAL  140 (237)
Q Consensus       129 ~Givt~~dl~~~  140 (237)
                      +|++|+.|++..
T Consensus       278 vGiITrTDIL~~  289 (294)
T COG2524         278 VGIITRTDILTR  289 (294)
T ss_pred             EEEEehHHHHHH
Confidence            999999999964

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.83  E-value=7.1e-09  Score=89.19  Aligned_cols=104  Identities=34%  Similarity=0.448  Sum_probs=92.9

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC---CCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  170 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ++.++.++.++.++++....+++..+||.++   .++++|+||.+|+-..                              
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~------------------------------  166 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL------------------------------  166 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh------------------------------
Confidence            4678899999999999999999999999974   3689999999998642                              


Q ss_pred             HHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       171 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                        +.....++++|++++.+.+...++.++-+++.++....+||||++|+++.+|++.|-
T Consensus       167 --~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl  223 (503)
T KOG2550|consen  167 --EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDL  223 (503)
T ss_pred             --hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhh
Confidence              234678999999988899999999999999999999999999999999999999885

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.74  E-value=8.3e-08  Score=69.38  Aligned_cols=56  Identities=25%  Similarity=0.341  Sum_probs=51.5

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|..  .+.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        55 ~~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          55 TLKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             ccChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            3468899987  7889999999999999999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.69  E-value=1.9e-08  Score=89.52  Aligned_cols=169  Identities=12%  Similarity=0.047  Sum_probs=106.8

Q ss_pred             CCEEEEecCccchhHHH-hccCCCceEEecCCce---eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHH
Q 026495           33 LPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV---FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL  108 (237)
Q Consensus        33 v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~---~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~  108 (237)
                      +.++....+..++.+.+ ...++++|++.++..+   ....+.+.....  ....+++++|++   +.+++++.++.+++
T Consensus       203 v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~--~~~~~l~~~~~~---~~~Vpe~~~l~~ll  277 (408)
T TIGR03520       203 IFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN--KKNFDWQSLLRE---PYFVPENKKLDDLL  277 (408)
T ss_pred             EEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc--cCCCCHHHHcCC---CeEeCCCCcHHHHH
Confidence            33444444455555666 7888899999876544   222222221111  123467888876   78999999999999


Q ss_pred             HHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhcCCccccccccCce
Q 026495          109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPV  188 (237)
Q Consensus       109 ~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~  188 (237)
                      +.|++++.+.++|+|+.|...|+||.+|+++.+.-            +.          .+..+ .....+.. ......
T Consensus       278 ~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivg------------ei----------~de~d-~~~~~i~~-~~~~~~  333 (408)
T TIGR03520       278 RDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVG------------DI----------SDEFD-DEDLIYSK-IDDNNY  333 (408)
T ss_pred             HHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhC------------CC----------CCcCC-cCccceEE-eCCCeE
Confidence            99999999999999998999999999999975310            00          00000 00111222 123457


Q ss_pred             EEcCCCCHHHHHHHHHHcCCcEEEEE-cCCCcEEEEEEcccCCC
Q 026495          189 VVRETTNLEDAARLLLETKYRRLPVV-DADGWNYHKRKCSKGGS  231 (237)
Q Consensus       189 ~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~~~~iGvIt~~d~~~  231 (237)
                      .++..+++.++.+.|.-. ...++.. ++.+.+-|++...-|++
T Consensus       334 ~v~G~~~l~~l~~~l~~~-~~~~~~~~~~~~Tl~G~i~~~l~~i  376 (408)
T TIGR03520       334 VFEGKTSLKDFYKILKLE-EDMFDEVKGEAETLAGFLLEISGGF  376 (408)
T ss_pred             EEEeccCHHHHHHHhCCC-ccccCCcCCCCccHHHHHHHHhCcC
Confidence            788899999998888442 1112222 23456777776666654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.67  E-value=4.6e-08  Score=88.13  Aligned_cols=99  Identities=15%  Similarity=0.261  Sum_probs=79.5

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      ...+++++|++  +++++++++++.++++.|.+++...+||+|++|+++|+||.+|+.+.+.                  
T Consensus       193 ~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~------------------  252 (449)
T TIGR00400       193 PEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ------------------  252 (449)
T ss_pred             CCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHH------------------
Confidence            34579999998  7889999999999999999999999999999999999999999997431                  


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEE
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV  214 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  214 (237)
                                     ...-+++|.....+..+++.+.+++..|.+++..+++|.
T Consensus       253 ---------------~~~~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~  291 (449)
T TIGR00400       253 ---------------SEATEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL  291 (449)
T ss_pred             ---------------hhhHHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH
Confidence                           112255665554444457788999999999888877664

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.58  E-value=2.2e-07  Score=79.13  Aligned_cols=106  Identities=17%  Similarity=0.163  Sum_probs=74.4

Q ss_pred             CCEEEEecCccchhHHH-hccCCCceEEecCCce---eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHH
Q 026495           33 LPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV---FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL  108 (237)
Q Consensus        33 v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~---~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~  108 (237)
                      +.++....+...+.+.+ ....+.+|++.++..+   ....+.+............+.++|++   +.+++++.++.+++
T Consensus        79 i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~r~---~~~V~e~~~l~~~L  155 (292)
T PRK15094         79 MITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQ---AVVVPESKRVDRML  155 (292)
T ss_pred             EEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHcCC---CcCcCCCCcHHHHH
Confidence            44555455455555556 6667889998755333   22222222111111123457889987   56899999999999


Q ss_pred             HHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       109 ~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      +.|++++.+.+||+|+.|.++|+||.+|+++.+
T Consensus       156 ~~m~~~~~~~a~VvDe~G~viGiVTleDIle~i  188 (292)
T PRK15094        156 KEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  188 (292)
T ss_pred             HHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHH
Confidence            999999999999999889999999999999753

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.56  E-value=4.2e-07  Score=65.90  Aligned_cols=57  Identities=18%  Similarity=0.413  Sum_probs=52.1

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ...+++++|..  +++++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+++
T Consensus        57 ~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          57 CTAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             ccCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            34678899988  7899999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.54  E-value=1.8e-07  Score=68.19  Aligned_cols=84  Identities=21%  Similarity=0.242  Sum_probs=63.2

Q ss_pred             CCceEEecCCceeeeehhhhcc--cCCCCCc--ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEE
Q 026495           54 DRVSALRRSSAVFASGTLTANS--AAPSSGV--YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (237)
Q Consensus        54 ~~v~v~~~sp~~~~~~~~~~~~--~~~~~~~--~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~  129 (237)
                      .+++.+.++|.+..++.+....  .+....+  .+++++|.+  ++.++++++++.++++.|.+.+.+.+||+|++|+++
T Consensus        25 ~~~~~~~g~~n~e~~~vl~~~~~~~p~ll~~v~~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~  102 (113)
T cd04597          25 NVTAARLGEPNPQTRYVLEYLGIEPPILLADVHPRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPA  102 (113)
T ss_pred             ceeehhcCCCCHHHHHHHHHcCCCCchhhcchhhhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEE
Confidence            4466666666554443332221  1111222  679999988  789999999999999999999999999999889999


Q ss_pred             EEEehHhHhh
Q 026495          130 GLVSDYDLLA  139 (237)
Q Consensus       130 Givt~~dl~~  139 (237)
                      |+|+.+||.+
T Consensus       103 Givt~~dl~~  112 (113)
T cd04597         103 GIITLLDLAE  112 (113)
T ss_pred             EEEEHHHhhc
Confidence            9999999873

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.53  E-value=8.1e-07  Score=63.64  Aligned_cols=56  Identities=32%  Similarity=0.496  Sum_probs=51.6

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  .+.++++++++.++++.|.+.+...+||++++|+++|+++..|+.+
T Consensus        52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            4578899987  7899999999999999999999999999998899999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.51  E-value=9.5e-07  Score=64.71  Aligned_cols=57  Identities=37%  Similarity=0.622  Sum_probs=51.9

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ...++.++|.+  .+.++++++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus        67 ~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            34578899987  7999999999999999999999999999998899999999999974

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.47  E-value=1.1e-06  Score=63.06  Aligned_cols=56  Identities=41%  Similarity=0.673  Sum_probs=51.1

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ...++.++|.+  .+.++++++++.+++..|.+.+.+.+||++ +|+++|+||..|+++
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            45678899988  799999999999999999999999999999 789999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.47  E-value=1.3e-06  Score=62.59  Aligned_cols=57  Identities=35%  Similarity=0.491  Sum_probs=51.7

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ...+++++|.+  .+.++++++++.++++.|.+.+.+.+||+|++|++.|+|+.+|+.+
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            45678899987  7899999999999999999999999999998899999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.47  E-value=7.8e-07  Score=64.30  Aligned_cols=58  Identities=29%  Similarity=0.461  Sum_probs=50.5

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+...++++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            4578889975224678999999999999999999999999998789999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11573 hypothetical protein; Provisional

Probab=98.43  E-value=8.9e-07  Score=78.93  Aligned_cols=105  Identities=14%  Similarity=0.028  Sum_probs=73.4

Q ss_pred             CCEEEEecCccchhHHH-hccCCCceEEecCCceeeeehhhh--cccC---CCCCcccccccccccCceeEEcCCCCHHH
Q 026495           33 LPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAVFASGTLTA--NSAA---PSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (237)
Q Consensus        33 v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~~~~~~~~~--~~~~---~~~~~~~v~~im~~~~~~~~v~~~~~l~~  106 (237)
                      +-++....+..++.+.+ ...++++|++.++..+....-...  +...   .......+.+++++   +.+++++.++.+
T Consensus       199 i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~r~---~~~Vpe~~~l~~  275 (413)
T PRK11573        199 IVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAADE---IYFVPEGTPLST  275 (413)
T ss_pred             EEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhccC---CeEeCCCCcHHH
Confidence            33444444445555556 788899999997766632222211  1111   11111234456665   889999999999


Q ss_pred             HHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       107 ~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +++.|++++.+.+.|+|+.|...|+||.+|+++.
T Consensus       276 lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEe  309 (413)
T PRK11573        276 QLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEE  309 (413)
T ss_pred             HHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHH
Confidence            9999999999999999999999999999999974

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.42  E-value=2.4e-06  Score=60.78  Aligned_cols=56  Identities=27%  Similarity=0.537  Sum_probs=50.8

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..+++++|.+  .+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        51 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            3468899987  7889999999999999999999999999998899999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=1.5e-06  Score=62.34  Aligned_cols=56  Identities=27%  Similarity=0.414  Sum_probs=50.8

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|..  .++++++++++.++++.|.+++...+||++++|+++|++|.+|+.+
T Consensus        55 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          55 DAPVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             CCcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            3478889987  7999999999999999999999999999997799999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.41  E-value=4.5e-07  Score=75.33  Aligned_cols=62  Identities=24%  Similarity=0.276  Sum_probs=54.8

Q ss_pred             HHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          168 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       168 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                      +.+..........++|++++.++++++++.+|.++|.++++..+||+|++.+++|+|+.+|-
T Consensus       236 qa~~R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl  297 (382)
T COG3448         236 QALRRRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDL  297 (382)
T ss_pred             HHHHHHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHH
Confidence            33334455677899999999999999999999999999999999999999999999999873

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.40  E-value=1.4e-06  Score=79.29  Aligned_cols=104  Identities=23%  Similarity=0.293  Sum_probs=70.5

Q ss_pred             cCCEEEEecCccchhHHH-hccCCCceEEecCCce--eeeehhhhcccCCCCCccccccccc-ccCceeEEcCCCCHHHH
Q 026495           32 QLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV--FASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPTTTVDEA  107 (237)
Q Consensus        32 ~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~--~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~~~l~~~  107 (237)
                      .+.++....+..++.+.+ ......+|+..+...-  ....+.+..  . .....+++++|. .  +++++++++++.++
T Consensus        96 ~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~--~-~~~~~~V~dim~~~--~~v~v~~~~sl~ea  170 (486)
T PRK05567         96 DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF--E-TDLSQPVSEVMTKE--RLVTVPEGTTLEEA  170 (486)
T ss_pred             CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh--c-ccCCCcHHHHcCCC--CCEEECCCCCHHHH
Confidence            333333333333344444 4455677777632211  222222221  1 123457899997 4  68899999999999


Q ss_pred             HHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       108 ~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ++.|.+++.+.+||+|++|+++|+||.+||++.
T Consensus       171 l~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~  203 (486)
T PRK05567        171 LELLHEHRIEKLPVVDDNGRLKGLITVKDIEKA  203 (486)
T ss_pred             HHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhh
Confidence            999999999999999999999999999999975

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.40  E-value=2.5e-06  Score=62.27  Aligned_cols=57  Identities=39%  Similarity=0.612  Sum_probs=51.8

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ...++.++|..  ++.++++++++.++++.|.+.+...+||+|++|+++|++|..|+++
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            45678889987  7899999999999999999999999999998789999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.39  E-value=2.4e-06  Score=61.14  Aligned_cols=55  Identities=22%  Similarity=0.412  Sum_probs=50.3

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      .++.++|.+  ++.++++++++.++++.|.+.+...+||++++|++.|+++.+|+.+
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            568888887  7899999999999999999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.38  E-value=2.4e-06  Score=61.77  Aligned_cols=56  Identities=25%  Similarity=0.467  Sum_probs=49.9

Q ss_pred             cccccccccccCceeEEcCC--CCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPT--TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~--~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  .++++.++  +++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus        57 ~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            3578889987  78888876  78999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.37  E-value=3.1e-06  Score=72.99  Aligned_cols=114  Identities=18%  Similarity=0.159  Sum_probs=75.2

Q ss_pred             chhhhhcc--CCEEEEecCccchhHHH-hccCCCceEEecCC--ceeeeehhhh-cccCCCCCcccccccccccCceeEE
Q 026495           25 GRTSFALQ--LPCLLLSRPGCRVFSVL-ATSSDRVSALRRSS--AVFASGTLTA-NSAAPSSGVYTVGDFMTTKEELHVV   98 (237)
Q Consensus        25 ~~~ai~~~--v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp--~~~~~~~~~~-~~~~~~~~~~~v~~im~~~~~~~~v   98 (237)
                      ....+.+.  ++.+....+...+.+.+ ......+++..+..  ........+. ..........+++++|.+  +++++
T Consensus       199 V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~--~~~~v  276 (321)
T PRK11543        199 VHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTR--GGTTL  276 (321)
T ss_pred             HHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCC--CCEEE
Confidence            33446666  66654444344444444 33334566665332  1122211111 111112234568999998  88999


Q ss_pred             cCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           99 KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        99 ~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      .+++++.++++.|.+++...+||+|++|+++|+||.+|++++
T Consensus       277 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        277 QAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            999999999999999999999999988999999999999863

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.37  E-value=3e-06  Score=61.25  Aligned_cols=56  Identities=23%  Similarity=0.386  Sum_probs=51.0

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ...++.++|..  +++++++++++.++++.|.+.+...+||+|+ |+++|+|+..|+++
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          58 DRVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             CccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            34678899987  7999999999999999999999999999997 99999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.35  E-value=7.9e-06  Score=74.42  Aligned_cols=61  Identities=33%  Similarity=0.371  Sum_probs=54.9

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ....+++++|++..+++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence            3456899999864468899999999999999999999999999988999999999999974

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.35  E-value=3.6e-06  Score=60.02  Aligned_cols=55  Identities=27%  Similarity=0.547  Sum_probs=50.5

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      .++.++|.+  .+.++++++++.++++.|.+.+...+||++++|+++|++|.+|+++
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            467888987  7899999999999999999999999999998899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.35  E-value=3.9e-06  Score=60.18  Aligned_cols=55  Identities=40%  Similarity=0.600  Sum_probs=50.4

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  ++.++++++++.++++.|.+.+.+.+||+++ |+++|+||.+|+.+
T Consensus        58 ~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            4578899987  7899999999999999999999999999987 99999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.34  E-value=3.4e-06  Score=60.38  Aligned_cols=54  Identities=24%  Similarity=0.509  Sum_probs=49.5

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ++.++|.+  ++.++++++++.++++.|.+++.+.+||++++|++.|+++..|+.+
T Consensus        56 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          56 SVEDIMTR--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             CHHHhcCC--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            48888877  7889999999999999999999999999998899999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.34  E-value=3.1e-06  Score=62.05  Aligned_cols=56  Identities=41%  Similarity=0.723  Sum_probs=50.9

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  .++++++++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus        69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            3468888887  7999999999999999999999999999997799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.34  E-value=4.8e-06  Score=59.42  Aligned_cols=56  Identities=38%  Similarity=0.519  Sum_probs=49.2

Q ss_pred             cccccccccccCceeEEcC-CCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKP-TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~-~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|..  .+..+.. ++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus        53 ~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            4578899976  5666666 999999999999999999999998899999999999974

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.34  E-value=1.5e-06  Score=62.75  Aligned_cols=55  Identities=27%  Similarity=0.441  Sum_probs=50.7

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~  138 (237)
                      ..++.++|.+  .+.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|++
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  111 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL  111 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence            3468899987  788999999999999999999999999999889999999999987

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.32  E-value=4.9e-06  Score=59.81  Aligned_cols=56  Identities=38%  Similarity=0.595  Sum_probs=51.3

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  .+.++++++++.++++.|.+++...+||++++|+++|+|+..||++
T Consensus        58 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          58 TLPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             cCCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            3478999988  7889999999999999999999999999998899999999999974

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=1.6e-06  Score=63.22  Aligned_cols=59  Identities=22%  Similarity=0.418  Sum_probs=50.7

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC---CcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~  139 (237)
                      ...+++++|.....++++++++++.+++++|.+++.+.+||+|++   |+++|+||.+||.+
T Consensus        56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            355677888732258899999999999999999999999999976   69999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=5.6e-06  Score=59.45  Aligned_cols=56  Identities=43%  Similarity=0.588  Sum_probs=50.8

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  .+.++.+++++.++++.|.+.+.+.+||++++|+++|+++..|+++
T Consensus        57 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          57 TTTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             cCCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            3358899987  7899999999999999999999999999998799999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.29  E-value=1.4e-06  Score=63.49  Aligned_cols=52  Identities=33%  Similarity=0.406  Sum_probs=48.0

Q ss_pred             CccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       177 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .++.++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~d  109 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLD  109 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHH
Confidence            4688999888999999999999999999999999999998899999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.29  E-value=6.6e-06  Score=58.95  Aligned_cols=55  Identities=40%  Similarity=0.569  Sum_probs=50.5

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|..  .++.+++++++.++++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            4578899987  7999999999999999999999999999987 89999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=4.7e-06  Score=59.78  Aligned_cols=55  Identities=38%  Similarity=0.597  Sum_probs=49.9

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  .+.++.+++++.+++..|.+++...+||+++ |+++|+||..|++.
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            3468888987  7889999999999999999999999999997 89999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=2.5e-06  Score=62.63  Aligned_cols=50  Identities=20%  Similarity=0.337  Sum_probs=46.1

Q ss_pred             ccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHh
Q 026495           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (237)
Q Consensus        87 ~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~  138 (237)
                      ++|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.
T Consensus        72 ~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          72 TIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             ccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            46766  788999999999999999999999999999889999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.28  E-value=1.5e-05  Score=72.29  Aligned_cols=57  Identities=32%  Similarity=0.442  Sum_probs=53.3

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      .+++++|++  +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++..
T Consensus       148 ~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~  204 (479)
T PRK07807        148 TQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRAT  204 (479)
T ss_pred             CCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHh
Confidence            469999998  899999999999999999999999999999889999999999999753

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.28  E-value=4.4e-06  Score=59.98  Aligned_cols=56  Identities=34%  Similarity=0.542  Sum_probs=51.5

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC-CCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  .+.++++++++.++++.|.+.+.+.+||+|+ +|+++|+++.+|+.+
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            3688999988  7999999999999999999999999999997 789999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.28  E-value=2.1e-06  Score=60.91  Aligned_cols=45  Identities=22%  Similarity=0.370  Sum_probs=42.3

Q ss_pred             eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhh
Q 026495           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA  139 (237)
Q Consensus        95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~  139 (237)
                      +.++.+++++.++++.|.+++.+++||+|++ |+++|++|.+|++.
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            6789999999999999999999999999987 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.27  E-value=4.6e-06  Score=74.85  Aligned_cols=105  Identities=15%  Similarity=0.109  Sum_probs=72.2

Q ss_pred             CCEEEEecCccchhHHH-hccCCCceEEecCCceeeeehhhh--cccCCCCC-cccccccccccCceeEEcCCCCHHHHH
Q 026495           33 LPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAVFASGTLTA--NSAAPSSG-VYTVGDFMTTKEELHVVKPTTTVDEAL  108 (237)
Q Consensus        33 v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~~~~~~~~~--~~~~~~~~-~~~v~~im~~~~~~~~v~~~~~l~~~~  108 (237)
                      +-.+..+.+...+.+.+ ...++++|++.++..+....-...  +....... .......+.+   ++.++++.++.+++
T Consensus       218 i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~---~~~Vpet~~~~~lL  294 (429)
T COG1253         218 IVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRP---PLFVPETLSLSDLL  294 (429)
T ss_pred             EEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccC---CeEecCCCcHHHHH
Confidence            33344444455555666 777899999996655533322222  11111111 1222223334   88999999999999


Q ss_pred             HHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       109 ~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +.|++.+.+.+.|+|+.|.+.|+||.+|+++.
T Consensus       295 ~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEe  326 (429)
T COG1253         295 EEFREERTHMAIVVDEYGGVEGLVTLEDIIEE  326 (429)
T ss_pred             HHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHH
Confidence            99999999999999999999999999999974

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.27  E-value=2.5e-06  Score=62.00  Aligned_cols=56  Identities=39%  Similarity=0.748  Sum_probs=51.3

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  ++.++++++++.+++..|.+.+.+.+||++++|+++|+||..|+++
T Consensus        66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            4568889988  7999999999999999999999999999998799999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.26  E-value=5.2e-06  Score=60.48  Aligned_cols=56  Identities=38%  Similarity=0.657  Sum_probs=50.7

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ...++.++|..  ++.++++++++.+++..|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            34578888987  7899999999999999999999999999997 99999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.26  E-value=3e-06  Score=60.97  Aligned_cols=57  Identities=23%  Similarity=0.410  Sum_probs=51.6

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ...++.++|.+  ++.++..++++.++++.|.+++...+||+|++|+++|+++..|+.+
T Consensus        56 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          56 KDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             cCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            44578899987  7899999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.25  E-value=3.2e-06  Score=61.73  Aligned_cols=46  Identities=20%  Similarity=0.478  Sum_probs=43.2

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            5789999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.25  E-value=3.1e-06  Score=60.65  Aligned_cols=56  Identities=23%  Similarity=0.442  Sum_probs=51.5

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..+++++|.+  ++..+.+++++.++++.|.+.+...+||+|++|+++|+||..|+++
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~  107 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVID  107 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhh
Confidence            4578899987  7899999999999999999999999999998899999999999985

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.24  E-value=9.2e-06  Score=59.86  Aligned_cols=51  Identities=22%  Similarity=0.420  Sum_probs=46.1

Q ss_pred             ccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        87 ~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      +.|..  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            45555  6889999999999999999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.23  E-value=7.3e-06  Score=58.72  Aligned_cols=54  Identities=26%  Similarity=0.293  Sum_probs=47.6

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..+.++|.   ++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus        57 ~~~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          57 LDLRDLLR---PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             CCHHHHhc---CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            35666664   4788999999999999999999999999998899999999999873

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=3.4e-06  Score=60.57  Aligned_cols=55  Identities=31%  Similarity=0.462  Sum_probs=49.9

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|..  .+.++.+++++.++++.|.+++...+||++ +|+++|++|.+|+++
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            3578899987  788999999999999999999999999998 589999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.22  E-value=7.4e-06  Score=59.09  Aligned_cols=54  Identities=28%  Similarity=0.538  Sum_probs=47.9

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..+++++|.+  .+.++.+++++.++++.|.+.+  .+||+|++|+++|++|.+|+++
T Consensus        62 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          62 DLKVIDVMNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CCcHHHHhcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            4578899988  7999999999999999998754  5899998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.22  E-value=4.1e-06  Score=71.85  Aligned_cols=109  Identities=16%  Similarity=0.156  Sum_probs=79.6

Q ss_pred             ccCCEEEEecCccchhHHH-hccCCCceEEecCCce-eeeehhhh-cccCCCCCcccccccccccCceeEEcCCCCHHHH
Q 026495           31 LQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV-FASGTLTA-NSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (237)
Q Consensus        31 ~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~-~~~~~~~~-~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~  107 (237)
                      ..+..+.+..+...+.+.+ ..++.++|+++++..+ .+....-. ++......+.+-.++++-.+++.++++++++.+-
T Consensus       210 ~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~Q  289 (423)
T COG4536         210 NEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQ  289 (423)
T ss_pred             cceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHH
Confidence            4455566666666777777 8889999999988766 32222221 1111222224445566443468899999999999


Q ss_pred             HHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus       108 ~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      +..|++++.+...|||+.|.+.|+||.+|+++
T Consensus       290 L~~F~~~k~hialVVDEYG~i~GLVTLEDIlE  321 (423)
T COG4536         290 LVAFQRNKKHIALVVDEYGDIQGLVTLEDILE  321 (423)
T ss_pred             HHHHHHhcceEEEEEeccCcEEeeeeHHHHHH
Confidence            99999999999999999999999999999996

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.22  E-value=1.1e-05  Score=57.94  Aligned_cols=56  Identities=29%  Similarity=0.388  Sum_probs=50.6

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ...++.++|.+  ++..+++++++.++++.|.+++...+||+|+ |+++|++|..|+.+
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence            34578899987  7899999999999999999999999999985 89999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.22  E-value=3.5e-06  Score=61.50  Aligned_cols=57  Identities=32%  Similarity=0.538  Sum_probs=51.4

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ...++.++|.+  ++..++.++++.++++.|.+.+.+.+||+|++|++.|++|.+|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            35567888887  7899999999999999999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.21  E-value=3.3e-06  Score=60.68  Aligned_cols=55  Identities=29%  Similarity=0.379  Sum_probs=50.6

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      .++.++|.+  .+.++++++++.++++.|.+++...+||++++|+++|+|+..|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            578899987  7889999999999999999999999999998899999999999873

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.21  E-value=3.9e-06  Score=60.67  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=50.0

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC--CcEEEEEehHhHhh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA  139 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~--~~~~Givt~~dl~~  139 (237)
                      .++.++|..  .++++.+++++.++++.|.+++...+||+|++  |+++|+||.+|+.+
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          58 SAVDEVATP--PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             ccHHHhccC--CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            347788887  79999999999999999999999999999977  79999999999974

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.20  E-value=5.2e-06  Score=58.98  Aligned_cols=54  Identities=19%  Similarity=0.274  Sum_probs=49.3

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      +++++|.+  .+..+.+++++.++++.|.+++...+||+|++|+++|+++.+++.+
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            47788987  6788999999999999999999999999998899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.20  E-value=1.5e-05  Score=56.35  Aligned_cols=54  Identities=31%  Similarity=0.503  Sum_probs=49.6

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~  138 (237)
                      ..++.++|.+  .+.++++++++.++++.|.+++...+||+|+ |++.|++|.+|++
T Consensus        50 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          50 NRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             cCCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence            3468889988  7999999999999999999999999999997 9999999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.20  E-value=1.2e-05  Score=57.67  Aligned_cols=56  Identities=32%  Similarity=0.447  Sum_probs=50.6

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  +++.+..++++.++++.|.+++...+||++++|++.|++|.+|+++
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          56 DTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             ccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            3468889987  7899999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.19  E-value=1.4e-05  Score=57.09  Aligned_cols=54  Identities=43%  Similarity=0.654  Sum_probs=49.7

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ++.++|.+  ++.++.+++++.++++.|.+++.+.+||+|++|++.|++|..|+.+
T Consensus        57 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          57 LVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             CHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            57788887  7999999999999999999999999999998899999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=1.2e-05  Score=57.70  Aligned_cols=56  Identities=34%  Similarity=0.665  Sum_probs=50.1

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ...++.++|.+  ++.++.+++++.++++.|.+.+...+||+|++ +++|+|+.+|+.+
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            45578899987  78899999999999999999999999999865 9999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.18  E-value=4.2e-06  Score=60.53  Aligned_cols=55  Identities=35%  Similarity=0.455  Sum_probs=48.7

Q ss_pred             ccccccccccCceeEEcC--CCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           83 YTVGDFMTTKEELHVVKP--TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~--~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      .+++++|..  ....+..  ++++.++++.|.+++...+||+|++|+++|+||.+|+.+
T Consensus        57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            468899987  5666755  999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=6e-06  Score=62.00  Aligned_cols=55  Identities=31%  Similarity=0.583  Sum_probs=50.4

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..+++++|.+  ++..+.+++++.++++.|.+++.+.+||+++ |+++|+||.+|+++
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            4578999987  7889999999999999999999999999986 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.14  E-value=3.8e-06  Score=61.99  Aligned_cols=57  Identities=23%  Similarity=0.333  Sum_probs=47.5

Q ss_pred             CcccccccccccCceeE--E----cCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHV--V----KPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~--v----~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~  139 (237)
                      ...+++++|.+  ....  +    .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus        62 ~~~~v~~im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTP--KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            35678899986  4433  3    268899999999999999999999986 79999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.14  E-value=4.4e-06  Score=62.37  Aligned_cols=55  Identities=38%  Similarity=0.498  Sum_probs=50.6

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  ++..+.+++++.+++..|.+.+.+.+||+| +|+++|++|.+|+.+
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            4578899987  789999999999999999999999999999 799999999999874

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.14  E-value=7.6e-05  Score=67.63  Aligned_cols=57  Identities=25%  Similarity=0.335  Sum_probs=53.4

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      .+++++|++  +++++++++++.+++++|.+++.+.+||+|++|+++|+||.+||++..
T Consensus       146 ~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~  202 (475)
T TIGR01303       146 TQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRAT  202 (475)
T ss_pred             CCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            579999998  899999999999999999999999999999889999999999999753

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.14  E-value=1.4e-05  Score=69.03  Aligned_cols=57  Identities=28%  Similarity=0.336  Sum_probs=52.2

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ...+++++|.+  ++.++.+++++.++++.|.+++.+.+||++ +|+++|+||..|+++.
T Consensus       267 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        267 RQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             ccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            35689999998  899999999999999999999999999998 5899999999999863

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.13  E-value=5.1e-06  Score=59.79  Aligned_cols=55  Identities=38%  Similarity=0.607  Sum_probs=50.2

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  .+.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+.+
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            4578899987  7889999999999999999999999999997 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.12  E-value=5.8e-06  Score=61.46  Aligned_cols=53  Identities=36%  Similarity=0.605  Sum_probs=49.2

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ++.++|.+  ++..+.+++++.+++..|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            78888987  7899999999999999999999999999997 99999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.12  E-value=3.2e-06  Score=62.49  Aligned_cols=58  Identities=21%  Similarity=0.216  Sum_probs=49.5

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHH---------HCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILV---------EKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~---------~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ...+++++|.+  ++.++.+++++.++.+++.         +.+.+.+||++++|+++|+||.+|++++
T Consensus        57 ~~~~v~~im~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          57 PSDPVSKALYK--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             CCCcHHHHhhc--cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence            45689999998  8999999999999999653         3356788899888999999999999863

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.10  E-value=1e-05  Score=56.98  Aligned_cols=45  Identities=36%  Similarity=0.540  Sum_probs=42.4

Q ss_pred             eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      +.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus        51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            778999999999999999999999999998799999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.09  E-value=2.6e-05  Score=56.20  Aligned_cols=87  Identities=30%  Similarity=0.439  Sum_probs=63.4

Q ss_pred             hccCCCceEEecC-CceeeeehhhhcccCCCCCcc-cccccccccCceeEEcCCCCHHHHHHHHHH-CCCCeEEEEcCCC
Q 026495           50 ATSSDRVSALRRS-SAVFASGTLTANSAAPSSGVY-TVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDW  126 (237)
Q Consensus        50 ~~~~~~v~v~~~s-p~~~~~~~~~~~~~~~~~~~~-~v~~im~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~~pVvd~~~  126 (237)
                      ......+++..+. .....+.+.+........... ++.++|..  .+.++.++.++.++.+.|.+ .+.+.+||+++++
T Consensus        27 ~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~  104 (117)
T COG0517          27 ENGVSAVPVVDDGKLVGIITERDILRALAAGGKRLLPVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDG  104 (117)
T ss_pred             HcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCCccccHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCC
Confidence            4445566776643 333444444443222222222 68999997  78999999999999999999 7999999999886


Q ss_pred             -cEEEEEehHhHh
Q 026495          127 -KLVGLVSDYDLL  138 (237)
Q Consensus       127 -~~~Givt~~dl~  138 (237)
                       +++|++|..|+.
T Consensus       105 ~~lvGivt~~di~  117 (117)
T COG0517         105 GKLVGIITLSDIL  117 (117)
T ss_pred             CeEEEEEEHHHcC
Confidence             999999999973

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.09  E-value=8.8e-06  Score=59.39  Aligned_cols=55  Identities=36%  Similarity=0.582  Sum_probs=50.4

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      .++.++|..  .++++++++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            467888987  7999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.09  E-value=1.3e-05  Score=70.63  Aligned_cols=116  Identities=22%  Similarity=0.326  Sum_probs=90.4

Q ss_pred             eeEEcCCCCHHHHHHHHHHCCCCeEEEEc-CCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           95 LHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      +..+.+..++.++...+.+++++++||.| +.+.+..++|.+-+++++........                 +..++  
T Consensus       164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~-----------------~~~~l--  224 (381)
T KOG1764|consen  164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP-----------------LPSLL--  224 (381)
T ss_pred             ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc-----------------cHHHh--
Confidence            48899999999999999999999999999 45899999999999986533222111                 00111  


Q ss_pred             hcCCccccc---cccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccCCC
Q 026495          174 TNGKMVGDL---MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKGGS  231 (237)
Q Consensus       174 ~~~~~v~~i---m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~~~  231 (237)
                        ..++.++   ...+...+.+++++.+|++.|.+.++..+|||++.|+.+|++++.|+..
T Consensus       225 --~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~  283 (381)
T KOG1764|consen  225 --SKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIH  283 (381)
T ss_pred             --hCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhh
Confidence              2233332   1235788999999999999999999999999999999999999999753

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.08  E-value=1.5e-05  Score=47.56  Aligned_cols=46  Identities=41%  Similarity=0.710  Sum_probs=41.8

Q ss_pred             eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +.++.+++++.++.+.|.+.+.+.+||++++++++|+++..++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            5678999999999999999999999999988999999999999753

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.07  E-value=2.5e-05  Score=56.69  Aligned_cols=56  Identities=38%  Similarity=0.595  Sum_probs=50.6

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ...++.++|.+  .+.++..++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus        65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            34678889988  7899999999999999999999999999986 89999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.07  E-value=1.1e-05  Score=57.35  Aligned_cols=53  Identities=30%  Similarity=0.492  Sum_probs=48.2

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ++.++|.+  ...+++++.++.+++..|.+++...+||+| +|+++|++|.+|+.+
T Consensus        51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            57778887  788999999999999999999999999998 589999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.07  E-value=6.7e-06  Score=62.46  Aligned_cols=67  Identities=15%  Similarity=0.214  Sum_probs=54.1

Q ss_pred             hhhHHHHHHHHHhhc--CCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKTFNEVQKLLSKTN--GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~--~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ..+++.+...+.+..  ......+|..++..+.+++++.+++++|.++|++.+||+++ |+++|-||.+|
T Consensus        47 lSt~k~Il~aL~e~e~~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~  115 (187)
T COG3620          47 LSTVKRILEALEEAEKTRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITEND  115 (187)
T ss_pred             HHHHHHHHHHHHHhhcceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHH
Confidence            445555555554332  24567899999999999999999999999999999999994 99999998764

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.06  E-value=2.4e-05  Score=72.82  Aligned_cols=57  Identities=25%  Similarity=0.387  Sum_probs=51.9

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC--CcEEEEEehHhHhhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLAL  140 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~--~~~~Givt~~dl~~~  140 (237)
                      ..+++++|.+  ++.++++++++.++++.|.+++.+.+||+|++  ++++|+||.+|+.+.
T Consensus       511 ~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~  569 (574)
T PRK01862        511 DKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDA  569 (574)
T ss_pred             cchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHH
Confidence            4578999988  78999999999999999999999999999876  489999999999974

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.05  E-value=1.2e-05  Score=73.39  Aligned_cols=63  Identities=21%  Similarity=0.373  Sum_probs=55.8

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~  143 (237)
                      ...+|.++|++...++++++++++.++++.|.+++...+||+|++++++|+||.+||.+....
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            356899999973238899999999999999999999999999988999999999999986543

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.03  E-value=0.00012  Score=66.84  Aligned_cols=61  Identities=34%  Similarity=0.447  Sum_probs=55.0

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ...+++++|++.+++++++++.++.+++++|.+++...+||+|++++++|+||.+||++..
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence            3567999998644688999999999999999999999999999999999999999999753

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.01  E-value=3e-05  Score=70.01  Aligned_cols=93  Identities=24%  Similarity=0.348  Sum_probs=68.0

Q ss_pred             chhHHH-hccCCCceEEecCC----ce-eeeehhhhcccCCCCCccccccccc-ccCceeEEcCCCCHHHHHHHHHHCCC
Q 026495           44 RVFSVL-ATSSDRVSALRRSS----AV-FASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRI  116 (237)
Q Consensus        44 ~v~~~~-~~~~~~v~v~~~sp----~~-~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~~~l~~~~~~~~~~~~  116 (237)
                      ++.+.+ ......+|+..+..    .. ....+.+..  . .....+++++|+ .  +++++++++++.++++.|.+++.
T Consensus       101 eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~--~-~~~~~~V~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~  175 (450)
T TIGR01302       101 DVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF--V-KDKGKPVSEVMTRE--EVITVPEGIDLEEALKVLHEHRI  175 (450)
T ss_pred             HHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh--h-hcCCCCHHHhhCCC--CCEEECCCCcHHHHHHHHHHcCC
Confidence            333334 44566778887542    11 222222221  1 123557899998 4  68999999999999999999999


Q ss_pred             CeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          117 TGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       117 ~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      +.+||+|++|++.|+||.+||++..
T Consensus       176 ~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       176 EKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            9999999999999999999999864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.01  E-value=3.2e-05  Score=54.99  Aligned_cols=54  Identities=30%  Similarity=0.416  Sum_probs=46.1

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  .+.++++++++.++.+.|.+ .. .+||++++|+++|+||.+|+.+
T Consensus        56 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          56 SLPVREVMGE--PLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             CcCHHHHhcC--CCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence            3568888987  78899999999999999988 33 4788988899999999999974

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.97  E-value=5.6e-05  Score=53.41  Aligned_cols=53  Identities=43%  Similarity=0.771  Sum_probs=48.3

Q ss_pred             ccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        85 v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      +.++|..  +...+++++++.++++.|.+.+...+||+|++|++.|+++..|+.+
T Consensus        60 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcC--CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            5677877  7889999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.97  E-value=4.8e-05  Score=57.50  Aligned_cols=55  Identities=31%  Similarity=0.642  Sum_probs=49.7

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  .+.+++.++++.+++..|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus        88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            4567888887  7999999999999999999999999999997 89999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.97  E-value=2e-05  Score=71.00  Aligned_cols=61  Identities=26%  Similarity=0.348  Sum_probs=55.9

Q ss_pred             CCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        78 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ......+|+++|+.  ++.+++.++.+.||+-.|.+++++++||++ +|+++|+||..||++..
T Consensus       209 g~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         209 GRSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF  269 (610)
T ss_pred             CCCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence            34567799999999  899999999999999999999999999998 69999999999999864

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.96  E-value=7.8e-05  Score=52.92  Aligned_cols=54  Identities=37%  Similarity=0.551  Sum_probs=47.9

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      .++.++|..  .+.++..++++.+++..|.+.+.+.+||+|+ |++.|++|.+|+.+
T Consensus        52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            356778877  7888999999999999999999999999985 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.95  E-value=2.2e-05  Score=57.90  Aligned_cols=56  Identities=27%  Similarity=0.432  Sum_probs=49.3

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEc--CCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd--~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  +++++++++++.+++..|.+.+...+||++  ++|+++|+||.+|+++
T Consensus        70 ~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            3468889987  799999999999999999999999999984  4689999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.94  E-value=2.7e-05  Score=55.67  Aligned_cols=49  Identities=22%  Similarity=0.489  Sum_probs=45.1

Q ss_pred             cccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        88 im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      +|.+  ++.++++++++.++++.|.+++.+.+||++ +|+++|+||.+|+.+
T Consensus        56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            7877  788999999999999999999999999996 689999999999974

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.87  E-value=5.7e-05  Score=64.46  Aligned_cols=87  Identities=22%  Similarity=0.294  Sum_probs=70.4

Q ss_pred             hccCCCceEEecCCce--eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCc
Q 026495           50 ATSSDRVSALRRSSAV--FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK  127 (237)
Q Consensus        50 ~~~~~~v~v~~~sp~~--~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~  127 (237)
                      ...++.+|+...+..-  ....+...    ......++..+|++  .+.++.+.+++..+.+.|.=.++..+||+|++.+
T Consensus       218 kt~~sRfPVvn~~~kvvGvVt~rDv~----~~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~  291 (432)
T COG4109         218 KTGHSRFPVVNRSMKVVGVVTMRDVL----DKKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNT  291 (432)
T ss_pred             HcCCCccceecccceEEEEEEehhhh----cCCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCce
Confidence            5667788888755433  33443333    23456788999999  8999999999999999999999999999999999


Q ss_pred             EEEEEehHhHhhhcc
Q 026495          128 LVGLVSDYDLLALDS  142 (237)
Q Consensus       128 ~~Givt~~dl~~~~~  142 (237)
                      ++|+||+.|+++.+.
T Consensus       292 llGiitR~dvlk~lq  306 (432)
T COG4109         292 LLGIITRQDVLKSLQ  306 (432)
T ss_pred             EEEEEEHHHHHHHHH
Confidence            999999999997543

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.87  E-value=0.00014  Score=66.31  Aligned_cols=123  Identities=18%  Similarity=0.256  Sum_probs=85.7

Q ss_pred             eeEEcC-CCCHHHHHHHHHHCCCCeEEEE-cC-CCcEEEEEehHhHhhhcc-c---cCCCCCCCCcccccccchhhHHHH
Q 026495           95 LHVVKP-TTTVDEALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLLALDS-I---SGSGRADNSMFPEVDSTWKTFNEV  167 (237)
Q Consensus        95 ~~~v~~-~~~l~~~~~~~~~~~~~~~pVv-d~-~~~~~Givt~~dl~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...+.. +.++++...+|.++.++.+||+ ++ .++++|+|.++|+.-.+. .   +.+.......+.+          .
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~----------~  627 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFND----------P  627 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCC----------C
Confidence            445544 4899999999999999999988 33 368999999999874322 1   1111100000000          0


Q ss_pred             HHHHH--hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          168 QKLLS--KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       168 ~~~~~--~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .+...  ......+.++|...+.++...++.+-+++++.+-+...+.|.+ +|++.|+||++|
T Consensus       628 ~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd  689 (696)
T KOG0475|consen  628 SPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKD  689 (696)
T ss_pred             CccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHH
Confidence            00000  1123457788988899999999999999999999998887765 899999999876

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.85  E-value=7.2e-05  Score=62.72  Aligned_cols=51  Identities=35%  Similarity=0.434  Sum_probs=46.8

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEe
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS  133 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt  133 (237)
                      ...+++++|.+  +++++.+++++.++++.|.+.+...+||+|++|+++|+|+
T Consensus       218 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       218 LKSEVRDFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ccCcHHHhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            35679999988  7899999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.82  E-value=4.5e-05  Score=55.24  Aligned_cols=56  Identities=16%  Similarity=0.253  Sum_probs=48.1

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCC---eEEEEcCCCcEEEEEehHhHhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT---GFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~---~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      ..++.++|.+  .+..+.+++++.+++..|.+.+..   ..||++++|+++|+|+..|+.+
T Consensus        60 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          60 KKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             CCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            4578899988  799999999999999999988753   4468888899999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.78  E-value=5.9e-05  Score=44.84  Aligned_cols=42  Identities=40%  Similarity=0.440  Sum_probs=37.9

Q ss_pred             ceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       187 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ++++.+++++.++++.|.+.+.+.+||++++++++|+++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~   43 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRD   43 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHH
Confidence            467899999999999999999999999997789999999765

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=97.77  E-value=8.9e-05  Score=60.05  Aligned_cols=96  Identities=18%  Similarity=0.185  Sum_probs=71.1

Q ss_pred             ccchhHHH-hccCCCceEEecCCceeeeehhh--hcc-cCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCC
Q 026495           42 GCRVFSVL-ATSSDRVSALRRSSAVFASGTLT--ANS-AAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT  117 (237)
Q Consensus        42 ~~~v~~~~-~~~~~~v~v~~~sp~~~~~~~~~--~~~-~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~  117 (237)
                      .......+ ++.++++|++.++..+....-+-  .+. .........++++.+|   .+.++++-.+.-.++.|+.++.+
T Consensus        88 l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnH  164 (293)
T COG4535          88 LDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNH  164 (293)
T ss_pred             HHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHhccc---ceecccchhHHHHHHHHHhhcCc
Confidence            33444455 78899999998765552222111  111 1122234677788877   88899999999999999999999


Q ss_pred             eEEEEcCCCcEEEEEehHhHhhh
Q 026495          118 GFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       118 ~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      .+.|+|+-|.+.|.||.+|++..
T Consensus       165 MAIViDEfGgVsGLVTIEDiLEq  187 (293)
T COG4535         165 MAIVIDEFGGVSGLVTIEDILEQ  187 (293)
T ss_pred             eEEEEeccCCeeeeEEHHHHHHH
Confidence            99999999999999999999974

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.71  E-value=9.4e-05  Score=55.51  Aligned_cols=43  Identities=28%  Similarity=0.285  Sum_probs=39.6

Q ss_pred             CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       186 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ++.++.+++++.+|++.|...++..+||+|++|+++|+|+..|
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~D   44 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGD   44 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHH
Confidence            4678999999999999999999999999998899999999776

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.48  E-value=0.00012  Score=62.04  Aligned_cols=107  Identities=23%  Similarity=0.193  Sum_probs=80.3

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (237)
                      ...-++++++|++.+....-.+...-..++..+.......+.+++.+++.+|+|+..++..                   
T Consensus       270 ~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-------------------  330 (386)
T COG4175         270 RSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVK-------------------  330 (386)
T ss_pred             hhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhc-------------------
Confidence            3456678888885212222233344456788888888777888887788999999988763                   


Q ss_pred             cchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcc
Q 026495          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCS  227 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~  227 (237)
                                        .    .+...+..+..++++.+.+....+.+.+ ++|+|++++++|+|++.
T Consensus       331 ------------------~----~~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~  376 (386)
T COG4175         331 ------------------A----ALIDDVLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRG  376 (386)
T ss_pred             ------------------c----cccccccccCccchHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHH
Confidence                              1    3456677899999999999999988875 78999999999999875

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.48  E-value=0.00025  Score=64.12  Aligned_cols=55  Identities=33%  Similarity=0.421  Sum_probs=49.7

Q ss_pred             hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|.+++.++.+++++.++++.|.+.++..+||+|++++++|+|+.+|
T Consensus       332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~d  386 (454)
T TIGR01137       332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRE  386 (454)
T ss_pred             hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHH
Confidence            3456899999999999999999999999999999999999998899999999776

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.47  E-value=0.00037  Score=61.54  Aligned_cols=105  Identities=17%  Similarity=0.098  Sum_probs=72.1

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (237)
                      ..+-++++++|.+   ...+...+.. .+++.   .+...++|+|+     |+++..+...+..                
T Consensus       270 ~~~~l~a~~~m~~---~~~~~~~~~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~----------------  321 (382)
T TIGR03415       270 PLNVLTARSLMRP---LTDLEHVDGG-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQA----------------  321 (382)
T ss_pred             cccceeHHHHhcc---cccccccCcc-hhhhh---cccceeEeecc-----ceecccchHhHhh----------------
Confidence            3556778888865   3333222222 33433   67788889985     8888877654211                


Q ss_pred             cchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                    ......+.+ +..+.+++++++++.+++..+.+.+.. ++|+|+ |+++|+|++.+
T Consensus       322 --------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~  374 (382)
T TIGR03415       322 --------------WAAEQEVES-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDN  374 (382)
T ss_pred             --------------cccccchhh-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHH
Confidence                          001234666 556678999999999999999998876 888885 99999998753

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.38  E-value=0.00023  Score=63.81  Aligned_cols=59  Identities=19%  Similarity=0.374  Sum_probs=54.9

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ..+..++++|.+  ++.++.+++..+++.+.+.+++.-.+||||++++++|++|..|+...
T Consensus       193 ~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidv  251 (451)
T COG2239         193 EPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDV  251 (451)
T ss_pred             CcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHH
Confidence            456789999999  79999999999999999999999999999999999999999999864

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.18  E-value=0.00088  Score=58.85  Aligned_cols=55  Identities=25%  Similarity=0.438  Sum_probs=49.8

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      .+.+.|.+  ...++++++++.+++..|.+++.. +||+|++|+++|+||..++++.+
T Consensus       303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~  357 (363)
T TIGR01186       303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL  357 (363)
T ss_pred             chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence            56777877  788999999999999999999998 99999999999999999999753

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.83  E-value=0.0027  Score=56.49  Aligned_cols=56  Identities=23%  Similarity=0.285  Sum_probs=49.3

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhcc
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~  142 (237)
                      .+.+.+.+  ...++.+++++.+++..+.+.... +||+|++|+++|+|+..++++.+.
T Consensus       338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD  393 (400)
T ss_pred             chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            56777776  688999999999999999997776 999999999999999999997643

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.68  E-value=0.012  Score=55.30  Aligned_cols=64  Identities=27%  Similarity=0.321  Sum_probs=54.2

Q ss_pred             CCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC--CcEEEEEehHhHhhhccc
Q 026495           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALDSI  143 (237)
Q Consensus        78 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~--~~~~Givt~~dl~~~~~~  143 (237)
                      .....+.|+++|.+  ++.++..+.|..|..+.+..+..+.+|+||+.  .-++|.|.++.|..++..
T Consensus       583 ~~~h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~  648 (931)
T KOG0476|consen  583 SSVHTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR  648 (931)
T ss_pred             cceeEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence            34567899999999  99999999999999999988879999999854  457899999999865443

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=95.79  E-value=0.013  Score=51.34  Aligned_cols=58  Identities=33%  Similarity=0.367  Sum_probs=52.3

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ....+.++|++  +.++.+.+.++.++-+++.+++...+||||++|+++.++++.||.+.
T Consensus       169 ~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  169 NSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             ccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence            45567889999  56888999999999999999999999999999999999999999864

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.37  E-value=0.028  Score=51.84  Aligned_cols=55  Identities=18%  Similarity=0.289  Sum_probs=49.7

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ....+|.+  .+.++++++++..+..++++-+.+++.|+++.++..|++|++|+.+.
T Consensus       691 Dl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  691 DLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY  745 (762)
T ss_pred             ccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence            44567888  78999999999999999999999999999988889999999999863

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=95.01  E-value=0.04  Score=50.41  Aligned_cols=124  Identities=19%  Similarity=0.149  Sum_probs=89.0

Q ss_pred             CCCCCcccccccccccCceeEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCC-cEEEEEehHhHhhhccccCCCCCCCCcc
Q 026495           77 APSSGVYTVGDFMTTKEELHVVKPTTTVD-EALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDSISGSGRADNSMF  154 (237)
Q Consensus        77 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~~~~~~  154 (237)
                      .-.+..+.++++|.+-+++..+..+..+. +......+.+++++||.+.+. ..+|.+=...++++....          
T Consensus       198 ~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~----------  267 (498)
T KOG2118|consen  198 ALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE----------  267 (498)
T ss_pred             hHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc----------
Confidence            44567788999999987888888888887 666677799999999998652 223332222222221100          


Q ss_pred             cccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                       ......++.+.+....+.++.++++.+.++.+.+...+.+.|.+ ...-+|+++..|
T Consensus       268 -----------------~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~  323 (498)
T KOG2118|consen  268 -----------------VPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLED  323 (498)
T ss_pred             -----------------cccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccc
Confidence                             01124567778888888999999999999999999988777776 556788888876

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.82  E-value=0.075  Score=44.26  Aligned_cols=61  Identities=23%  Similarity=0.282  Sum_probs=43.8

Q ss_pred             CCCcccccccccccC--ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495           79 SSGVYTVGDFMTTKE--ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus        79 ~~~~~~v~~im~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      .+...++.+.|.+..  +--.......-.+++..+...+...+||+|++|+++|.+|..+|+.
T Consensus       245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         245 LLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             ccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            345667777776521  1112334444566778888889999999999999999999999974

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=93.69  E-value=0.14  Score=45.36  Aligned_cols=52  Identities=15%  Similarity=0.314  Sum_probs=43.1

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ++.+ +..  +..++++++++.+++..+.++.+. ++|+|+ |+++|+|+..+++..
T Consensus       327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~  378 (382)
T TIGR03415       327 EVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHA  378 (382)
T ss_pred             chhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHH
Confidence            3445 444  578899999999999999888775 788885 999999999999864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.08  E-value=0.32  Score=40.63  Aligned_cols=105  Identities=23%  Similarity=0.191  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhcCCcccccc
Q 026495          104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLM  183 (237)
Q Consensus       104 l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im  183 (237)
                      +.||+++-     .++.|++ +|+++-+-+..++++..+....           +++.   +.-...+.......+.+.|
T Consensus       196 idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV-----------~~f~---g~~~~~~~~l~~~~~~~~~  255 (309)
T COG1125         196 IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFV-----------EDFF---GESERGLRLLSLVSVADAV  255 (309)
T ss_pred             HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHH-----------HHHh---ccccccccccchhhHHHhh
Confidence            56776663     3567777 6999999999999863211000           0000   0000000000112233333


Q ss_pred             ccCc----eEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          184 TPAP----VVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       184 ~~~~----~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....    ..+.......+++..+...+...+||+|++|+++|.||+.+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~  304 (309)
T COG1125         256 RRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRAD  304 (309)
T ss_pred             cccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHH
Confidence            2211    12334445556888888888889999999999999999865

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=89.84  E-value=0.87  Score=42.37  Aligned_cols=58  Identities=14%  Similarity=0.239  Sum_probs=49.9

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ......+++|..  .+.++....+.+-+++++++-+.+...|.. +|++.|+||.+|+++.
T Consensus       636 ~~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  636 PSRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRH  693 (696)
T ss_pred             CCCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHh
Confidence            455667888887  788999999999999999999998887665 7999999999999864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=89.80  E-value=0.68  Score=39.89  Aligned_cols=47  Identities=26%  Similarity=0.367  Sum_probs=40.5

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      .+..+..++++.+.+..+.+... .++|+|++|+++|+++...++.++
T Consensus       336 ~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL  382 (386)
T COG4175         336 DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEAL  382 (386)
T ss_pred             cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHH
Confidence            57788999999999988877766 578999999999999999998753

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=82.31  E-value=1.2  Score=42.46  Aligned_cols=51  Identities=16%  Similarity=0.158  Sum_probs=44.2

Q ss_pred             CccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC--CcEEEEEEcc
Q 026495          177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GWNYHKRKCS  227 (237)
Q Consensus       177 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~iGvIt~~  227 (237)
                      ..++++|.+++.++..+++..|..+.+.....+.+|+|+..  .-++|-|.++
T Consensus       588 v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~  640 (931)
T KOG0476|consen  588 VKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARR  640 (931)
T ss_pred             EEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHH
Confidence            46899999999999999999999999998879999999853  3588988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
4gqv_A	166	Crystal Structure Of Cbs-pair Protein, Cbsx1 From A		2e-69
3sl7_A	180	Crystal Structure Of Cbs-Pair Protein, Cbsx2 From A		1e-58
4gqw_A	152	Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop		1e-57
2cu0_A	486	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		4e-07
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		7e-06
3kh5_A	280	Crystal Structure Of Protein Mj1225 From Methanocal		5e-05
2yzq_A	282	Crystal Structure Of Uncharacterized Conserved Prot		2e-04

>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From Arabidopsis Thaliana Length = 166

Iteration: 1
 Score =  258 bits (659), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/139 (88%), Positives = 133/139 (95%)
Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 140 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
           LDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E TNLEDA
Sbjct: 62  LDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDA 121
Query: 200 ARLLLETKYRRLPVVDADG 218
           A++LLETKYRRLPVVD+DG
Sbjct: 122 AKILLETKYRRLPVVDSDG 140

>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/136 (75%), Positives = 125/136 (91%)
Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           YTVGDF T ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4   YTVGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
           ISG  + D ++FP+VDSTWKTFNE+QKL+SKT GK+VGDL TP+P+VVR++TNLEDAARL
Sbjct: 64  ISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLXTPSPLVVRDSTNLEDAARL 123
Query: 203 LLETKYRRLPVVDADG 218
           LLETK+RRLPVVDADG
Sbjct: 124 LLETKFRRLPVVDADG 139

>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop Deletion) From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  219 bits (558), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/139 (79%), Positives = 119/139 (85%), Gaps = 14/139 (10%)
Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 140 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
           LDS               DSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E TNLEDA
Sbjct: 62  LDS--------------GDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDA 107
Query: 200 ARLLLETKYRRLPVVDADG 218
           A++LLETKYRRLPVVD+DG
Sbjct: 108 AKILLETKYRRLPVVDSDG 126

>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 35/126 (27%)
Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           E++  + P  TVD AL ++ +  I G PV++D+ K+VG+++  D+ A +           
Sbjct: 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDIAARE----------- 148
Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                  GK+V +LMT   + V E+  +E+A ++++E +  RLP
Sbjct: 149 -----------------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLP 185
Query: 213 VVDADG 218
           VVD  G
Sbjct: 186 VVDERG 191

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           + D MT +E+L V  P  ++++A EIL + RI   P++  D KLVGL++  D++++    
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP 216
Query: 145 GSGRADNSMF---PEVDSTWKTFNEVQKLL 171
            + R +         V ++ +T   V+KL+
Sbjct: 217 NAARDEKGRLLVGAAVGTSPETMERVEKLV 246

>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From Methanocaldococcus Jannaschii, A Putative Archaeal Homolog Of G-Ampk. Length = 280

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 28/123 (22%)
Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 151
           +E +  +K    +DEA+E  + K + G P+++D+ +L+ L+++ D++             
Sbjct: 91  EENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI------------R 138
Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 211
           ++  ++D      NEV           + D +T   +V      L+D AR ++   +RRL
Sbjct: 139 ALLDKIDE-----NEV-----------IDDYITRDVIVATPGERLKDVARTMVRNGFRRL 182
Query: 212 PVV 214
           PVV
Sbjct: 183 PVV 185

>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Pyrococcus Horikoshii Length = 282

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 33/116 (28%)
Query: 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162
           T + ALE+  + ++  FPV++ + KLVG++S                             
Sbjct: 19  TRNYALELFKKYKVRSFPVVNKEGKLVGIIS----------------------------- 49
Query: 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
               V+++L   + + +  L+     VV+E   L+ AA+L+LE  YRR+ VVD+ G
Sbjct: 50  ----VKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	9e-52
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	2e-17
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	6e-40
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-12
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-11
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	9e-33
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-09
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-32
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	4e-10
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	5e-32
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	7e-11
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-08
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	6e-32
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	7e-10
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-29
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-12
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	7e-09
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-29
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-12
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	7e-29
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-11
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-27
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	8e-11
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-27
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-12
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	5e-27
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-12
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-08
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-26
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	1e-25
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	9e-06
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	2e-04
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-25
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	1e-12
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-25
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-11
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	5e-25
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	4e-11
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	8e-08
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-25
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-23
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-21
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-11
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-07
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	5e-24
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	5e-12
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	4e-09
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-23
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-23
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-09
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-04
3ddj_A	296	CBS domain-containing protein; structural genomics	3e-23
3ddj_A	296	CBS domain-containing protein; structural genomics	8e-23
3ddj_A	296	CBS domain-containing protein; structural genomics	3e-10
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	6e-23
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	5e-10
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	3e-07
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	3e-22
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	7e-15
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-11
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	9e-10
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-21
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	5e-20
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-18
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-10
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	3e-21
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-10
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	8e-21
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-10
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	1e-04
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	3e-20
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	5e-08
4fry_A	157	Putative signal-transduction protein with CBS DOM;	5e-20
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-10
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	8e-18
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	3e-04
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-17
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	8e-09
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-16
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-11
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	4e-10
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-04
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	1e-14
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	3e-07
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	7e-14
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	6e-09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	1e-13
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	5e-09
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	4e-13
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	2e-09
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	5e-13
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	3e-09
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	1e-12
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	2e-07
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	2e-12
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	2e-07
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	2e-10
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	4e-06
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-10
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	6e-09
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	3e-07
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	4e-04
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	6e-10
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	8e-09
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	1e-08
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	2e-08
2oux_A	286	Magnesium transporter; 10001B, structural genomics	1e-07
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	4e-06
3fio_A	70	A cystathionine beta-synthase domain protein fused	6e-06
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score =  164 bits (418), Expect = 9e-52
 Identities = 105/136 (77%), Positives = 127/136 (93%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           YTVGDFMT ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4   YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
           ISG  + D ++FP+VDSTWKTFNE+QKL+SKT GK+VGDLMTP+P+VVR++TNLEDAARL
Sbjct: 64  ISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARL 123

Query: 203 LLETKYRRLPVVDADG 218
           LLETK+RRLPVVDADG
Sbjct: 124 LLETKFRRLPVVDADG 139

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 75.9 bits (187), Expect = 2e-17
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 10/84 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL----- 138
            VGD MT      VV+ +T +++A  +L+E +    PV+D D KL+G+++  +++     
Sbjct: 99  VVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ 156

Query: 139 ---ALDSISGSGRADNSMFPEVDS 159
                DSISG  + D ++FP+VDS
Sbjct: 157 IKRNADSISGRSQNDTNLFPDVDS 180

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score =  133 bits (338), Expect = 6e-40
 Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 15/137 (10%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
           V  V   ++   +  VV+  T ++E ++ ++E  +T    +  D KLVG++    LL   
Sbjct: 15  VKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLK-- 70

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                  +    F  +       + +++L++K       ++M   PV V   T LE+A +
Sbjct: 71  ------VSGFHFFGFIPKEELIRSSMKRLIAKN----ASEIML-DPVYVHMDTPLEEALK 119

Query: 202 LLLETKYRRLPVVDADG 218
           L+++   + +PVVD  G
Sbjct: 120 LMIDNNIQEMPVVDEKG 136

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 51  TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEI 110
                +         F        S+          + M        V   T ++EAL++
Sbjct: 64  PVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLD---PVYVHMDTPLEEALKL 120

Query: 111 LVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +++  I   PV+D+  ++VG ++  ++L
Sbjct: 121 MIDNNIQEMPVVDEKGEIVGDLNSLEIL 148

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 165 NEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           +++         K V  L++  P VV E T +E+    +LE    R   V  D 
Sbjct: 4   DKIHHHHHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN 57

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score =  115 bits (290), Expect = 9e-33
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 24/135 (17%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D M + E++  V+    ++ AL +LV+   +  PV+D  +KL GL+S   +  LD I
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMI--LDGI 73

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
            G  R +     E+                     V  +M     V++   +   A  + 
Sbjct: 74  LGLERIEFERLEEMK--------------------VEQVMKQDIPVLKLEDSFAKALEMT 113

Query: 204 LETKYRRLPVVDADG 218
           ++  +  +  V+ DG
Sbjct: 114 ID--HPFICAVNEDG 126

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V   M     + V+K   +  +ALE+ ++        +++D    G+++   +L
Sbjct: 87  MKVEQVMKQD--IPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAIL 138

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score =  115 bits (289), Expect = 1e-32
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 24/135 (17%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TV  F+   +++  V+P   +D AL +L +   +  PV+D  +KL GL+S   +  +D+I
Sbjct: 12  TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMM--MDAI 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
            G  R +                      +     V ++M      +R   +L  A  L+
Sbjct: 70  LGLERIE--------------------FERLETMKVEEVMNRNIPRLRLDDSLMKAVGLI 109

Query: 204 LETKYRRLPVVDADG 218
           +   +  + V + DG
Sbjct: 110 VN--HPFVCVENDDG 122

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V + M     +  ++   ++ +A+ ++V        V +DD    G+ +  ++L
Sbjct: 83  MKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVL 134

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score =  113 bits (285), Expect = 6e-32
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 24/135 (17%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TVG FM   +++  V+    ++ AL +L +   T  PV+D  ++L GL+    ++     
Sbjct: 15  TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM----- 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                               F   +    K +   V ++M      +     +     ++
Sbjct: 70  -----------------NSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMV 112

Query: 204 LETKYRRLPVVDADG 218
           +      + V + + 
Sbjct: 113 IN--NGFVCVENDEQ 125

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 55.1 bits (133), Expect = 7e-10
 Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            TV + M T   +  +     + +   +++        V +D+    G+ +   +L
Sbjct: 86  ITVEEVMLTD--IPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVL 137

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score =  107 bits (270), Expect = 1e-29
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 21/134 (15%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D MT     H +  T T+++A  ++    I   P++D + KL+G+VS  DLLA    
Sbjct: 6   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLA---- 59

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                         +S+ +   +   L  +T    + ++M      V     L+++A  +
Sbjct: 60  ------------AQESSLQRSAQGDSLAFETP---LFEVMHTDVTSVAPQAGLKESAIYM 104

Query: 204 LETKYRRLPVVDAD 217
            + K   LPVV  D
Sbjct: 105 QKHKIGCLPVVAKD 118

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
            + + M T  ++  V P   + E+   + + +I   PV+  D  LVG+++D D +    +
Sbjct: 79  PLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFVTIAIN 135

Query: 143 ISGSGRA 149
           +      
Sbjct: 136 LLELQEE 142

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 52.3 bits (126), Expect = 7e-09
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
             V D+MT  P  +  T  L DA  L+     R +P+VDA+ 
Sbjct: 5   IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANK 46

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  106 bits (268), Expect = 1e-29
 Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 21/136 (15%)

Query: 84  TVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
            +GD  + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L  
Sbjct: 9   PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL-- 66

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
                     ++ ++  +      V + L + +                +   L      
Sbjct: 67  ------IKGGIYNDLSLS------VGEALMRRSD------DFEGVYTCTKNDKLSTIMDN 108

Query: 203 LLETKYRRLPVVDADG 218
           + + +  R  VVD  G
Sbjct: 109 IRKARVHRFFVVDDVG 124

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +  +    E ++       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 78  SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 136

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score =  101 bits (255), Expect = 1e-27
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 34/140 (24%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D MT    +   K    V EA E +++ +I+  PVIDD+ K++G+V+  D+      
Sbjct: 9   KVKDVMTKN--VITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIG----- 61

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                   +  L  T    +GD+MT   + + E  ++ +A + +
Sbjct: 62  ------------------YNLIRDKYTLETT----IGDVMTKDVITIHEDASILEAIKKM 99

Query: 204 L-----ETKYRRLPVVDADG 218
                 E    +LPVVD + 
Sbjct: 100 DISGKKEEIINQLPVVDKNN 119

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 57.3 bits (139), Expect = 8e-11
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILV-----EKRITGFPVIDDDWKLVGLVSDYDLL 138
           T+GD MT   ++  +    ++ EA++ +      E+ I   PV+D + KLVG++SD D++
Sbjct: 74  TIGDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDII 131

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score =  102 bits (255), Expect = 3e-27
 Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 28/135 (20%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V   M +      V   TTV +A++I+ E  + G  V DD+   VGL+S+  ++     
Sbjct: 10  RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSII----- 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                             +     +K         +  +M      V+   +++D A  L
Sbjct: 63  -----------------KRFIPRNKKPDEVP----IRLVMRKPIPKVKSDYDVKDVAAYL 101

Query: 204 LETKYRRLPVVDADG 218
            E    R  VVD  G
Sbjct: 102 SENGLERCAVVDDPG 116

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 63.2 bits (154), Expect = 1e-12
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +   M     +  VK    V +    L E  +    V+DD  ++VG+V+  DL 
Sbjct: 76  PIRLVMRKP--IPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS 128

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 99.5 bits (249), Expect = 5e-27
 Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 33/134 (24%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V D ++            ++ EA +IL++  I   P++D+  KLVG+++ +D+       
Sbjct: 3   VKDILSKP--PITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIA------ 54

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
              +A                         N K + ++MT   +   E   ++  A  + 
Sbjct: 55  ---KA----------------------LAQNKKTIEEIMTRNVITAHEDEPVDHVAIKMS 89

Query: 205 ETKYRRLPVVDADG 218
           +     +PVVD   
Sbjct: 90  KYNISGVPVVDDYR 103

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T+ + MT    +        VD     + +  I+G PV+DD  ++VG+V+  D+ 
Sbjct: 63  TIEEIMT--RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS 115

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           +V D+++  P+      ++ +AA++L++     LP+VD  G
Sbjct: 2   LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHG 42

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score =  100 bits (252), Expect = 1e-26
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 35/135 (25%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V  ++T   +  +V+ + TV E L  + + +     V D +    G+V+  DLL LD  
Sbjct: 14  KVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD-- 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                              V + ++     V E  N+  A  L 
Sbjct: 70  -------------------------------LDSSVFNKVSLPDFFVHEEDNITHALLLF 98

Query: 204 LETKYRRLPVVDADG 218
           LE +   LPVVD + 
Sbjct: 99  LEHQEPYLPVVDEEM 113

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 97.7 bits (243), Expect = 1e-25
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 13/140 (9%)

Query: 84  TVGDFMTTKEELHVV----KPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDL 137
              D M  +    ++    + + TV++   I+ E   +GFPV+      +LVG V   DL
Sbjct: 12  LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 71

Query: 138 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM--VGDLMTPAPVVVRETTN 195
           +          A       V ++   F E    L         + +++  +P  V + T 
Sbjct: 72  IISIE-----NARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTP 126

Query: 196 LEDAARLLLETKYRRLPVVD 215
           +E    +  +   R+  V  
Sbjct: 127 MEIVVDIFRKLGLRQCLVTH 146

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + +        V   T ++  ++I  +  +    V  +  +L+G+++  D+L
Sbjct: 109 KLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVL 160

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 179 VGDLMTPAP------VVVRETTNLEDAARLLLETKYRRLPVVDADG 218
             D+M P        V+ +++  +ED   ++ ET Y   PVV +  
Sbjct: 13  AMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE 58

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 95.7 bits (239), Expect = 2e-25
 Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 33/136 (24%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V ++M T  ++  V     +++  +++ EK I    V+D + K VG++++ D+      
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN-KPVGIITERDI------ 55

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAARL 202
                                  V+ +    + +    + MT + + +RE + +  A  L
Sbjct: 56  -----------------------VKAIGKGKSLETKAEEFMTASLITIREDSPITGALAL 92

Query: 203 LLETKYRRLPVVDADG 218
           + +   R LPVVD  G
Sbjct: 93  MRQFNIRHLPVVDDKG 108

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              +FMT    L  ++  + +  AL ++ +  I   PV+DD   L G++S  D+ 
Sbjct: 68  KAEEFMTAS--LITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDIT 120

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 95.3 bits (238), Expect = 3e-25
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 30/134 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D M T  ++  +  T ++++ L   VE       V+ +    VG+V+ +D+L     
Sbjct: 2   RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEG-VRVGIVTTWDVL----- 53

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                             +   E   L        V ++M    V +     +++AA  +
Sbjct: 54  ------------------EAIAEGDDLAEVK----VWEVMERDLVTISPRATIKEAAEKM 91

Query: 204 LETKYRRLPVVDAD 217
           ++    RL V + D
Sbjct: 92  VKNVVWRLLVEEDD 105

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + M     L  + P  T+ EA E +V+  +    V +DD +++G++S  D+L
Sbjct: 66  KVWEVMERD--LVTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISATDIL 117

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 94.9 bits (237), Expect = 5e-25
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D++     
Sbjct: 9   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIV----- 61

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                 +        N    G+L   +   V    ++++   ++
Sbjct: 62  ---------------------IKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVM 100

Query: 204 LETKYRRLPVVDAD 217
            E + RR+PV+   
Sbjct: 101 EEHQVRRVPVISEH 114

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 57.9 bits (141), Expect = 4e-11
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T G+       ++ V    ++ E L ++ E ++   PVI +  +LVG+V++ D+ 
Sbjct: 75  TAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIA 126

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 48.7 bits (117), Expect = 8e-08
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
             D+M      V E   L  AA+ + E     LP+   D 
Sbjct: 10  ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDD 49

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 98.3 bits (245), Expect = 7e-25
 Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 19/137 (13%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
              + D++T   ++ V  P   + +    +V       PV+ +  +LVG+++  D + L 
Sbjct: 147 NEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVSEG-RLVGIITSTDFIKL- 202

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                          + S W   +     + +     + ++M    +  +E   L+  A 
Sbjct: 203 ---------------LGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAE 247

Query: 202 LLLETKYRRLPVVDADG 218
           +++      LPVVD + 
Sbjct: 248 IMVTNDIGALPVVDENL 264

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 93.3 bits (232), Expect = 5e-23
 Identities = 22/135 (16%), Positives = 53/135 (39%), Gaps = 16/135 (11%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSI 143
           +      K  +  V PTTT+ +AL  + E +    PV++  + K+VG+++  D++     
Sbjct: 6   MKIAQNKK--IVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDF--- 60

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                 + ++       + V ++M    + ++E  ++++A    
Sbjct: 61  ----------MGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETF 110

Query: 204 LETKYRRLPVVDADG 218
           L       P+V+ + 
Sbjct: 111 LTKNVGGAPIVNDEN 125

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 87.5 bits (217), Expect = 7e-21
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 30/132 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V + M     +  +K    +DEA+E  + K + G P+++D+ +L+ L+++ D++     
Sbjct: 85  PVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI----- 137

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                   ++  ++D                    + D +T   +V      L+D AR +
Sbjct: 138 -------RALLDKIDENEV----------------IDDYITRDVIVATPGERLKDVARTM 174

Query: 204 LETKYRRLPVVD 215
           +   +RRLPVV 
Sbjct: 175 VRNGFRRLPVVS 186

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + M    ++   K    + +  EI+V   I   PV+D++ ++ G++++ D+L
Sbjct: 224 RMEEIMKR--DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVL 276

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
           +++        V V  TT +  A   + E KYRRLPVV+A 
Sbjct: 4   RVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAG 44

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 93.2 bits (232), Expect = 5e-24
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 32/141 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V DF +      V+    +V +A+  +  + +    V+D D  LVG++S  DLL     
Sbjct: 18  QVKDFQSIP---VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLL----- 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAAR 201
                             +     Q+L S      V  +MT  P   V R    + D A+
Sbjct: 70  ------------------RASIGQQELTSVP----VHIIMTRMPNITVCRREDYVMDIAK 107

Query: 202 LLLETKYRRLPVVDADGWNYH 222
            L+E +   LPV+      + 
Sbjct: 108 HLIEKQIDALPVIKDTDKGFE 128

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 61.2 bits (149), Expect = 5e-12
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLL 138
            V   MT    + V +    V +  + L+EK+I   PVI D    ++++G V+  ++ 
Sbjct: 82  PVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMT 139

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 163 TFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           T     +LL+    K+ V D  +  PVV+ E  ++ DA   +       L VVD D 
Sbjct: 2   TGKTGTQLLADKLKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDA 57

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 95.0 bits (236), Expect = 2e-23
 Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 13/139 (9%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALD 141
           +   D + T  +L V   +  V +A   LV   +   P+ D      VG+++  D + + 
Sbjct: 35  HRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINI- 93

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                      +     S      E+++   +T  ++         V +    +L DA  
Sbjct: 94  -----------LHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVS 142

Query: 202 LLLETKYRRLPVVDADGWN 220
            L+  K  RLPV+D +  N
Sbjct: 143 SLIRNKIHRLPVIDPESGN 161

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 94.6 bits (235), Expect = 3e-23
 Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 22/186 (11%)

Query: 35  CLLLSRPGCRVFSVLATSSDRVSA-LRRSSAVFASGTLTANSAAPSSGVYTVGDFMT-TK 92
              L R       V+   S      L     +            P     ++ +    T 
Sbjct: 141 VSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTY 200

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
             + +V+ TT V  AL I V+ R++  PV+D+  ++V + S +D++ L        A   
Sbjct: 201 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL--------AAEK 252

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
            +  +D +     + +                   +       LE     L+E +  RL 
Sbjct: 253 TYNNLDVSVTKALQHR------------SHYFEGVLKCYLHETLEAIINRLVEAEVHRLV 300

Query: 213 VVDADG 218
           VVD   
Sbjct: 301 VVDEHD 306

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 56.1 bits (135), Expect = 1e-09
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +V   +  +    E +       T++  +  LVE  +    V+D+   + G+VS  D+L
Sbjct: 260 SVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 318

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 146 SGRADNSMFPEVDSTWKTFNEVQKLLSK-TNGKMVGDLMTPA--PVVVRETTNLEDAARL 202
           S  A+++  PE + + +T      + +         DL+  +   VV   +  ++ A   
Sbjct: 3   SVAAESAPAPENEHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFA 62

Query: 203 LLETKYRRLPVVDADGWNY 221
           L+    R  P+ D+   ++
Sbjct: 63  LVTNGVRAAPLWDSKKQSF 81

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 94.4 bits (235), Expect = 3e-23
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 21/135 (15%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +   M       ++     +  A + + E  I    V ++  K+ GL++  DLL     
Sbjct: 21  NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLL----- 71

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                           ++   +  Q  L   +   + D MTP PV V  T++   A  ++
Sbjct: 72  ------------STVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIM 119

Query: 204 LETKYRRLPVVDADG 218
           +   +  LPVVD + 
Sbjct: 120 VTRNFGSLPVVDIND 134

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 92.9 bits (231), Expect = 8e-23
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 33/136 (24%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            + D+MT       V  T+    A+ I+V +     PV+D + K VG+V++ + L     
Sbjct: 94  PIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFL----- 146

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAARL 202
                                     L    +    V   M+     + +   L+ A +L
Sbjct: 147 -------------------------LLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKL 181

Query: 203 LLETKYRRLPVVDADG 218
           +L   +RRLPV+D D 
Sbjct: 182 MLRRGFRRLPVIDDDN 197

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D M T   L  +    +V+ A   ++ KRI    +++ D  + G++++ DLL
Sbjct: 228 VVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL 280

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 89.6 bits (223), Expect = 6e-23
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 29/132 (21%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +  +MT K  L  VKP+T+V EA  +++E  +    VI+DD  +VG  +  D+      
Sbjct: 8   PIKVYMTKK--LLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDI------ 59

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                    + P +                     V  +MT   +     T L +  R +
Sbjct: 60  -----IRRVIVPGLPYDIP----------------VERIMTRNLITANVNTPLGEVLRKM 98

Query: 204 LETKYRRLPVVD 215
            E + + + + +
Sbjct: 99  AEHRIKHILIEE 110

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 54.9 bits (133), Expect = 5e-10
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   MT    L      T + E L  + E RI    + ++  K+VG+ +  DLL
Sbjct: 73  PVERIMTRN--LITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLL 124

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 12/40 (30%), Positives = 25/40 (62%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           +   MT   + V+ +T++++A+RL++E     L V++ DG
Sbjct: 9   IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDG 48

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 91.9 bits (228), Expect = 3e-22
 Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 20/130 (15%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR 148
           + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L        
Sbjct: 194 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL-------- 245

Query: 149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 208
               ++ ++  +       +                       +   L      + + + 
Sbjct: 246 IKGGIYNDLSLSVGEALMRRS------------DDFEGVYTCTKNDKLSTIMDNIRKARV 293

Query: 209 RRLPVVDADG 218
            R  VVD  G
Sbjct: 294 HRFFVVDDVG 303

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 71.5 bits (175), Expect = 7e-15
 Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 12/137 (8%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALD 141
            T  D +     L V+  +  V ++L +L++  I   P+ D    +  GL++  D + + 
Sbjct: 30  KTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVI 89

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
               S      +  +            +L    + +    +       +  +  L +A  
Sbjct: 90  QYYFSNPDKFELVDK-----------LQLDGLKDIERALGVDQLDTASIHPSRPLFEACL 138

Query: 202 LLLETKYRRLPVVDADG 218
            +LE++  R+P++D D 
Sbjct: 139 KMLESRSGRIPLIDQDE 155

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 62.7 bits (152), Expect = 1e-11
 Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 26/130 (20%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLALDSISGSGR 148
           +   + P+  + EA   ++E R    P+ID D       +V +++ Y +L          
Sbjct: 123 DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILK--------- 173

Query: 149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 208
                       +   N  +    K     +  +        + TT + D  ++L + + 
Sbjct: 174 ------------FVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRV 221

Query: 209 RRLPVVDADG 218
             +P++D +G
Sbjct: 222 SSVPIIDENG 231

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 56.9 bits (137), Expect = 9e-10
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 84  TVGDFMT----TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +       E ++       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 257 SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 315

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 89.5 bits (222), Expect = 1e-21
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 35/134 (26%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V   MT       +    T + ALE+  + ++  FPV++ + KLVG++S   +L      
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL------ 54

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
                                         + + +  L+     VV+E   L+ AA+L+L
Sbjct: 55  ---------------------------VNPDEEQLAMLVKRDVPVVKENDTLKKAAKLML 87

Query: 205 ETKYRRLPVVDADG 218
           E  YRR+ VVD+ G
Sbjct: 88  EYDYRRVVVVDSKG 101

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 85.2 bits (211), Expect = 5e-20
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 28/134 (20%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           +   +    ++ VVK   T+ +A ++++E       V+D   K VG+++  D++      
Sbjct: 62  LAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR---- 115

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
                                       K  G  +         +V E T L+ A + LL
Sbjct: 116 ----------------------YFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALL 153

Query: 205 ETKYRRLPVVDADG 218
            +    LPVVD++G
Sbjct: 154 LSNSMALPVVDSEG 167

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 80.6 bits (199), Expect = 3e-18
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 7/139 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL----A 139
            +  +      + +V   T +  AL+ L+       PV+D +  LVG+V + DLL     
Sbjct: 127 EIEPYYQRY--VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 184

Query: 140 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
           +  +  +  A +S    +  +  T    +  L   N   V ++MT   +V      + + 
Sbjct: 185 VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKP-VAEIMTRDVIVATPHMTVHEV 243

Query: 200 ARLLLETKYRRLPVVDADG 218
           A  + +    +LPV+  +G
Sbjct: 244 ALKMAKYSIEQLPVIRGEG 262

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT   ++ V  P  TV E    + +  I   PVI  +  L+GL+ D+DLL
Sbjct: 222 PVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 274

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 85.0 bits (211), Expect = 3e-21
 Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 28/139 (20%)

Query: 80  SGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             + TV   +  K   +  + P  +V  A++ +    I    V+ D+ KLVG++++ D  
Sbjct: 3   GHMKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE-KLVGILTERDF- 60

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
                    +                              V ++MT     V      ED
Sbjct: 61  -SRKSYLLDKPVKDT------------------------QVKEIMTRQVAYVDLNNTNED 95

Query: 199 AARLLLETKYRRLPVVDAD 217
              L+ E + R LPV+D  
Sbjct: 96  CMALITEMRVRHLPVLDDG 114

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT +  +  V    T ++ + ++ E R+   PV+DD  K++GL+S  DL+
Sbjct: 75  QVKEIMTRQ--VAYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 126

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 84.7 bits (210), Expect = 8e-21
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 27/135 (20%)

Query: 84  TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
            V D +  K  ++  V P  ++ EA   L   +I    V D D  ++G+ ++ DL+   +
Sbjct: 25  FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK--A 82

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
           ++G G A                             V   MT   V  +  +  +    +
Sbjct: 83  VAGQGAASLQQ------------------------SVSVAMTKNVVRCQHNSTTDQLMEI 118

Query: 203 LLETKYRRLPVVDAD 217
           +   ++R +PV +  
Sbjct: 119 MTGGRFRHVPVEENG 133

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +V   MT    +   +  +T D+ +EI+   R    PV ++  +L G++S  D++
Sbjct: 94  SVSVAMTKN--VVRCQHNSTTDQLMEIMTGGRFRHVPVEENG-RLAGIISIGDVV 145

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           + D      V V    ++ +AA  L   K   + V DADG
Sbjct: 29  LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADG 68

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 82.1 bits (203), Expect = 3e-20
 Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 31/135 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T      T  +  V     +  +A   L        PV+D + + +G+V    LL     
Sbjct: 6   TFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKG 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
             + +                            + +G+ +       R    L D    +
Sbjct: 63  WPTVK----------------------------EKLGEELLETVRSYRPGEQLFDNLISV 94

Query: 204 LETKYRRLPVVDADG 218
              K   +P+ D DG
Sbjct: 95  AAAKCSVVPLADEDG 109

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            +G+ +     +   +P   + + L  +   + +  P+ D+D +  G+VS   +L 
Sbjct: 69  KLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILG 122

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 82.3 bits (204), Expect = 5e-20
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 31/145 (21%)

Query: 77  APSSGVYTVGDFMTTKE----ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            P S   TV   +  K      ++ V     V +A++++ EK I    V+D D  + G+V
Sbjct: 1   GPGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIV 59

Query: 133 SDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRE 192
           ++ D      +    R+  +                          V ++MT     V  
Sbjct: 60  TERDYAR--KVVLQERSSKAT------------------------RVEEIMTAKVRYVEP 93

Query: 193 TTNLEDAARLLLETKYRRLPVVDAD 217
           + + ++   L+ E + R LPV+D  
Sbjct: 94  SQSTDECMALMTEHRMRHLPVLDGG 118

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT K  +  V+P+ + DE + ++ E R+   PV+D   KL+GL+S  DL+
Sbjct: 79  RVEEIMTAK--VRYVEPSQSTDECMALMTEHRMRHLPVLDGG-KLIGLISIGDLV 130

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 77.0 bits (189), Expect = 8e-18
 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 21/136 (15%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALD 141
            V  FM     +  +   T ++E ++++    +T +P+++      LVG+V    L+   
Sbjct: 14  RVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQAL 71

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                 RA        D   +                      P  + +   T L  A  
Sbjct: 72  QAEPPSRAPGHQQCLQDILARGCP-----------------TEPVTLTLFSETTLHQAQN 114

Query: 202 LLLETKYRRLPVVDAD 217
           L      + L V    
Sbjct: 115 LFKLLNLQSLFVTSRG 130

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +     T+     +   TT+ +A  +     +    V     + VG VS  ++ 
Sbjct: 89  ILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRG-RAVGCVSWVEMK 142

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 75.8 bits (187), Expect = 1e-17
 Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 35/138 (25%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALD 141
              + +        +  T T+ E    L + R+    +   D+  + V +VS+ D+    
Sbjct: 6   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDI---- 59

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN-GKMVGDLMTPAPVVVRETTNLEDAA 200
                                    ++ +  + +       +   +P+ V +T  +  AA
Sbjct: 60  -------------------------LRAVAQRLDLDGPAMPIAN-SPITVLDTDPVHVAA 93

Query: 201 RLLLETKYRRLPVVDADG 218
             +     R + VV+ +G
Sbjct: 94  EKMRRHNIRHVVVVNKNG 111

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                  +      V  T  V  A E +    I    V++ + +LVG++S  DL 
Sbjct: 72  PAMPIANS---PITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 123

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 76.5 bits (188), Expect = 1e-16
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 20/128 (15%)

Query: 91  TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 150
           T   L      T V + +++L EK I+  P+++ +  L+ +    D++ L          
Sbjct: 191 TWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHL--------IQ 242

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR 210
           +  +  +D +      V + L K      G          R T  L+     +  ++  R
Sbjct: 243 DGDYSNLDLS------VGEALLKRPANFDG------VHTCRATDRLDGIFDAIKHSRVHR 290

Query: 211 LPVVDADG 218
           L VVD + 
Sbjct: 291 LFVVDENL 298

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 9/136 (6%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDS 142
           T  D + T   L V   T  V  +L +L    I   P+ D +  K  GL++  D + +  
Sbjct: 23  TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK 82

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
                 +      E+D          +LL     +     + P  + V    +L DA   
Sbjct: 83  YYYQSSSFPEAIAEIDK--------FRLLGLREVERKIGAIPPETIYVHPMHSLMDACLA 134

Query: 203 LLETKYRRLPVVDADG 218
           + +++ RR+P++D DG
Sbjct: 135 MSKSRARRIPLIDVDG 150

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +  +    + +H  + T  +D   + +   R+    V+D++ KL G++S  D+L
Sbjct: 252 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 310

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 26/130 (20%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLALDSISGSGR 148
           E   V P  ++ +A   + + R    P+ID D       +V +++ Y +L   S++    
Sbjct: 118 ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKET 177

Query: 149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 208
           A                    L        +              T + D  ++L E   
Sbjct: 178 A---------------MLRVPL------NQMTIGTWSNLATASMETKVYDVIKMLAEKNI 216

Query: 209 RRLPVVDADG 218
             +P+V+++G
Sbjct: 217 SAVPIVNSEG 226

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 71.4 bits (176), Expect = 1e-14
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 35/121 (28%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           + P  TVD AL ++ +  I G PV++D+ K+VG+++  D+           A        
Sbjct: 106 IAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDI----------AAREG----- 149

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                              K+V +LMT   + V E+  +E+A ++++E +  RLPVVD  
Sbjct: 150 -------------------KLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDER 190

Query: 218 G 218
           G
Sbjct: 191 G 191

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 49.4 bits (119), Expect = 3e-07
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KLVGL+
Sbjct: 152 VKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLI 197

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 69.4 bits (171), Expect = 7e-14
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 34/123 (27%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V+P  T+ + +E+       GFPV+ ++ +LVG+++  D+          R     F   
Sbjct: 102 VRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV----------R-----F-VT 145

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVD 215
           D T                  V  +MTP      V+E     +    + + +  ++ VV+
Sbjct: 146 DLTKS----------------VAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVN 189

Query: 216 ADG 218
            + 
Sbjct: 190 DEF 192

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 54.8 bits (133), Expect = 6e-09
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V   MT KE L  VK   T  E  E + + R+    V++D+++L G++
Sbjct: 151 VAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMI 198

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 34/123 (27%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V P  TV EA++++ E +I G PV+D++ +LVGL+++ D+          R     F E 
Sbjct: 108 VTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV----------R-----F-EK 151

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVD 215
           + + K                + DLMTP    +V     +LE A  +L + +  +LP+V 
Sbjct: 152 NLSKK----------------IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVS 195

Query: 216 ADG 218
            D 
Sbjct: 196 KDN 198

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 54.8 bits (133), Expect = 5e-09
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + D MT +E+L V  P  ++++A EIL + RI   P++  D KLVGL+
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLI 204

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 66.8 bits (164), Expect = 4e-13
 Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 36/126 (28%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSISGSGRADNSMF 154
           VKP  T  + L I          V DD      L+GLV+  D                  
Sbjct: 110 VKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDY----------P-----I 154

Query: 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLP 212
               +  K                V D+MTP    V   + T L +A +++ E K   LP
Sbjct: 155 DLTQTETK----------------VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALP 198

Query: 213 VVDADG 218
           ++D D 
Sbjct: 199 IIDDDQ 204

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V D MT   +L      T + EA +I+ EK++   P+IDDD  L  +V
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIV 210

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 66.8 bits (164), Expect = 5e-13
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 35/127 (27%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSISGSGRADNSM 153
           V+ P+ TV + LE  +    +G P+ +      KLVG+V+  D+                
Sbjct: 120 VLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDI--------------DF 165

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRL 211
             E D T                  + ++MTP    VV      L++A  +L  +K  +L
Sbjct: 166 LAEKDHTTL----------------LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKL 209

Query: 212 PVVDADG 218
           P+V+   
Sbjct: 210 PIVNDCD 216

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + + MT + EL V     T+ EA EIL   +    P+++D  +LV +++  DL
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDL 227

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 35/124 (28%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
           + P   V +A  ++ + RI+G PV++  D+ KLVG++++ D+          R     F 
Sbjct: 126 LTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM----------R-----F- 169

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP-VVVRETTNLEDAARLLLETKYRRLPVV 214
             D + K                + D+MT    +     T L +A ++L + K  +LP+V
Sbjct: 170 IQDYSIK----------------ISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLV 213

Query: 215 DADG 218
           D +G
Sbjct: 214 DNNG 217

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + D MT KE+L      TT+ EA +IL + +I   P++D++  L GL+
Sbjct: 177 ISDVMT-KEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLI 223

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 64.8 bits (159), Expect = 2e-12
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 35/124 (28%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
           + P   V EA E++   RI+G P+++   + KLVG++++ D+          R     F 
Sbjct: 103 LTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM----------R-----F- 146

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP-VVVRETTNLEDAARLLLETKYRRLPVV 214
             D                    + + MT    V     T+LE A R+L E +  +LP+V
Sbjct: 147 ISDYNAP----------------ISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLV 190

Query: 215 DADG 218
           D  G
Sbjct: 191 DNSG 194

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + + MT  E L      T ++ A  IL E RI   P++D+  +L GL+
Sbjct: 154 ISEHMT-SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLI 200

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 31/136 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKR--ITGFPVIDDDWKLVGLVSDYDLLALD 141
            V D M T +E+  V    T+ +AL  +  K   +T   + DDD  ++G+ +D DL    
Sbjct: 29  RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTA--ICDDDMNIIGIFTDGDL---- 82

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                 R             + F+    +   +    + D+MT   + +R  T   DA  
Sbjct: 83  ------R-------------RVFDTGVDMRDAS----IADVMTRGGIRIRPGTLAVDALN 119

Query: 202 LLLETKYRRLPVVDAD 217
           L+       + V D D
Sbjct: 120 LMQSRHITCVLVADGD 135

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 44.4 bits (106), Expect = 4e-06
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           ++ D MT       ++P T   +AL ++  + IT   V D D  L+G+V  +DLL
Sbjct: 96  SIADVMTRGG--IRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLL 147

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 58.4 bits (140), Expect = 2e-10
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 87  DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           D++ TK+ L  V     V++    + E R + +PVID++ K+VG ++ + L+
Sbjct: 188 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 53.8 bits (128), Expect = 6e-09
 Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 13/142 (9%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV--SDYDLLALD 141
            V D      ++  + P  ++  A  I+ +K +   PV D +  L+G++  S+     +D
Sbjct: 8   KVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD 65

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEV--QKLLSKTNGKMVGDLMTPAPVVVRE------- 192
               +  A ++   +      +       +      GK+V   M    +           
Sbjct: 66  IWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAI 125

Query: 193 TTNLEDAARLLLETKYRRLPVV 214
             +  +    L+E K   L V 
Sbjct: 126 AGDRAEIQAELIELKVSLLIVT 147

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 48.8 bits (115), Expect = 3e-07
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
           V DL       +    +L+ A  ++ +   + +PV D + 
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNN 48

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
            V V     +ED    + ET+Y   PV+D + 
Sbjct: 196 LVAVSTDDLVEDVKVTMSETRYSNYPVIDENN 227

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 57.8 bits (140), Expect = 6e-10
 Identities = 22/159 (13%), Positives = 45/159 (28%), Gaps = 21/159 (13%)

Query: 78  PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDWKLVGLVSDYD 136
             S   T  + M   E    + P +       IL +      FPVID +  L+G +S  +
Sbjct: 448 DRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKE 507

Query: 137 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL-----------------LSKTNGKMV 179
           ++           +              +  + +                  + T  +  
Sbjct: 508 IVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPT 567

Query: 180 GDL---MTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
             L      +P+VV   + +     L +      + V +
Sbjct: 568 SSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE 606

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 54.2 bits (131), Expect = 8e-09
 Identities = 34/142 (23%), Positives = 50/142 (35%), Gaps = 44/142 (30%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLL 138
             G  MT   E   V+   TV+E L  L         I    V+D+  +L G++S     
Sbjct: 156 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLS----- 208

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
                                       ++ L+       V ++M P  V VR  T+ E+
Sbjct: 209 ----------------------------LRDLIVADPRTRVAEIMNPKVVYVRTDTDQEE 240

Query: 199 AARLLLETKYRRL--PVVDADG 218
            ARL+    Y     PVVD +G
Sbjct: 241 VARLM--ADYDFTVLPVVDEEG 260

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 20/141 (14%), Positives = 39/141 (27%), Gaps = 42/141 (29%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDDDWKLVGLVSDYDLLA 139
             +G +     ++ V+    TV +A                ++D+  K +G V       
Sbjct: 54  NEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVR------ 105

Query: 140 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
                                         +      + +  L++     +   T L DA
Sbjct: 106 ---------------------------RYDIFKHEPHEPLISLLSEDSRALTANTTLLDA 138

Query: 200 ARLLLETKYRRL--PVVDADG 218
           A  +     R +  PV+D  G
Sbjct: 139 AEAI--EHSREIELPVIDDAG 157

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 34/145 (23%), Positives = 51/145 (35%), Gaps = 48/145 (33%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-------VIDDDWKLVGLVSDY 135
              G  MT   E   V+   TV+E L  L  +R            V+D+  +L G++S  
Sbjct: 135 DEAGGLMTP--EYVAVREGMTVEEVLRFL--RRAAPDAETIYYIYVVDEKGRLKGVLS-- 188

Query: 136 DLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTN 195
                                          ++ L+       V ++M P  V VR  T+
Sbjct: 189 -------------------------------LRDLIVADPRTRVAEIMNPKVVYVRTDTD 217

Query: 196 LEDAARLLLETKYRRL--PVVDADG 218
            E+ ARL+    Y     PVVD +G
Sbjct: 218 QEEVARLM--ADYDFTVLPVVDEEG 240

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 48/145 (33%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-------VIDDDWKLVGLVSDY 135
            T G  MTT  E   +    TV  A+ +L  K             V+D +  LVG++S  
Sbjct: 137 ETAGAIMTT--EFVSIVANQTVRSAMYVL--KNQADMAETIYYVYVVDQENHLVGVIS-- 190

Query: 136 DLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTN 195
                                          ++ L+   +  ++ D++    + V    +
Sbjct: 191 -------------------------------LRDLIVNDDDTLIADILNERVISVHVGDD 219

Query: 196 LEDAARLLLETKYRRL--PVVDADG 218
            ED A+ +    Y  L  PV D D 
Sbjct: 220 QEDVAQTI--RDYDFLAVPVTDYDD 242

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL---DSISGSG 147
                ++K   TV EA+ ++ + R+   PV+D DD  ++G+V    L+      +   S 
Sbjct: 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSD 451

Query: 148 RADNSM---FPEVDSTWKTFNEVQKLLSKTNGKMVGD 181
            A  ++      ++ + +   ++ ++L      ++  
Sbjct: 452 PAIKALNKRVIRLNES-EILGKLARVLEVDPSVLILG 487

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 79  SSGVY--TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK--LVGLVSD 134
           S+  Y   VGD M    ++  +  T+T  + L +L + ++  FP +D      L+G +  
Sbjct: 7   SANKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDR 64

Query: 135 YDLLALDSISGSGRADNSMFPEVDS 159
            ++  L     S             
Sbjct: 65  TEVEGLLQRRISAYRRQPAAAAEAD 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 38/229 (16%), Positives = 60/229 (26%), Gaps = 90/229 (39%)

Query: 52  SSDRVSALRR---------SSAV--FASGTLTAN-----------SAAPSSGVYTVGDFM 89
           S D VS   R            V  F    L  N              PS  +  +  ++
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS-MMTRM--YI 113

Query: 90  TTKEEL----------HV--VKPTTTVDEALEIL-VEKRIT-----GFPVIDDDWK--LV 129
             ++ L          +V  ++P   + +AL  L   K +      G        K  + 
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG------KTWVA 167

Query: 130 GLV-SDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV----------QKLLSK--TNG 176
             V   Y +          + D  +F      W                QKLL +   N 
Sbjct: 168 LDVCLSYKVQC--------KMDFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 177 KMVGDLMTPAPVVVRETTNLEDAA----RLLLETKYRR-LPVVDADGWN 220
               D  +   +       +        RLL    Y   L V+  +  N
Sbjct: 214 TSRSDHSSNIKL------RIHSIQAELRRLLKSKPYENCLLVLL-NVQN 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
4esy_A	170	CBS domain containing membrane protein; structural	99.87
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.86
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.85
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.85
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.84
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.84
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.84
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.84
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.84
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.84
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.83
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.83
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.82
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.82
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.82
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.81
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.81
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.81
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.81
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.81
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.8
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.8
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.8
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.8
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.79
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.79
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.79
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.79
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.79
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.78
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.78
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.78
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.78
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.77
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.76
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.76
3ddj_A	296	CBS domain-containing protein; structural genomics	99.76
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.76
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.75
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.75
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.74
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.74
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.74
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.73
3ddj_A	296	CBS domain-containing protein; structural genomics	99.73
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.72
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.72
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.72
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.71
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.7
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.7
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.69
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.68
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.65
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.62
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.62
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.6
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.57
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.56
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.56
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.55
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.51
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.5
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.49
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.48
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.45
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.42
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.33
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.32
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.21
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.16
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.03
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.0
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.0
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.98
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.97
4esy_A	170	CBS domain containing membrane protein; structural	98.95
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.91
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.91
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.89
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.88
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.88
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.88
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.88
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.86
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.86
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.85
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.82
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.79
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.78
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.77
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.76
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.75
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.75
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.74
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.73
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.73
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.73
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.71
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.7
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.67
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.67
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.65
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.64
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.63
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.61
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.6
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.58
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.57
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.55
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.54
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.53
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.51
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.5
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.43
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.42
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.33
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.32
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.31
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.12
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.1
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.08
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.08
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.97
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.91
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.85
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.65
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.49

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.87  E-value=3.9e-22  Score=155.20  Aligned_cols=141  Identities=22%  Similarity=0.249  Sum_probs=110.5

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      +..++|+++|++  +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+||++..........     .....
T Consensus        15 l~~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~-----~~~~~   87 (170)
T 4esy_A           15 IRQVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEA-----SEILS   87 (170)
T ss_dssp             HHTSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHH-----HHHHT
T ss_pred             HcCCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccch-----hhhhh
Confidence            456799999998  89999999999999999999999999999999999999999999875321110000     00000


Q ss_pred             chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ..................+++++|+++++++++++++.+|+++|.+++++++||+| +|+++|+||++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~D  155 (170)
T 4esy_A           88 RAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRD  155 (170)
T ss_dssp             TTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             hccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHH
Confidence            00001112223334456789999999999999999999999999999999999998 699999999987

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.86  E-value=6.7e-22  Score=154.49  Aligned_cols=147  Identities=71%  Similarity=1.123  Sum_probs=116.3

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccch
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (237)
                      .++|+++|.+..+++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||+++....+.......+++...+.|
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CC
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            45889999875568899999999999999999999999999988999999999999975443333333334455666777


Q ss_pred             hhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ..+.+....+......++.++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||++|
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~d  149 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGN  149 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHH
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHH
Confidence            7787777776666678899999998999999999999999999999999999998899999999876

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.85  E-value=1.4e-20  Score=142.87  Aligned_cols=120  Identities=17%  Similarity=0.227  Sum_probs=107.2

Q ss_pred             CCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccc
Q 026495           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (237)
Q Consensus        78 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~  156 (237)
                      ..+...+|+++|+++.+++++++++++.++++.|.+++++.+||+|++ |+++|+||.+|+++...              
T Consensus        18 ~~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~--------------   83 (148)
T 3lv9_A           18 FEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI--------------   83 (148)
T ss_dssp             CGGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHH--------------
T ss_pred             hccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh--------------
Confidence            445778999999986678999999999999999999999999999987 89999999999986421              


Q ss_pred             cccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                      .....++.++| ++++++++++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus        84 ----------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~d  138 (148)
T 3lv9_A           84 ----------------NENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIED  138 (148)
T ss_dssp             ----------------HHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHH
T ss_pred             ----------------cCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                            11257899999 88899999999999999999999999999998899999999876

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.85  E-value=8.6e-21  Score=140.48  Aligned_cols=117  Identities=22%  Similarity=0.336  Sum_probs=102.1

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      +++|+++|.+..+++++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|+++....                 
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-----------------   64 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS-----------------   64 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-----------------
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-----------------
Confidence            45899999973358999999999999999999999999999987 899999999999975321                 


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                  .....+++++|.+ +.++++++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus        65 ------------~~~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~d  119 (127)
T 3nqr_A           65 ------------DAEAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIED  119 (127)
T ss_dssp             ------------TCCCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHH
T ss_pred             ------------cCCCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                        1124678999955 779999999999999999999999999998899999999876

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.84  E-value=1.3e-20  Score=139.93  Aligned_cols=116  Identities=21%  Similarity=0.296  Sum_probs=101.5

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      ...+|+++|+++.+++++++++++.+|++.|.+++++++||+|++ |+++|+||.+|+++...                 
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~-----------------   65 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML-----------------   65 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----------------
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----------------
Confidence            456899999964478999999999999999999999999999985 89999999999997531                 


Q ss_pred             chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                    ....+++++|.+ +.++.+++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus        66 --------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~D  119 (129)
T 3jtf_A           66 --------------EPALDIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMED  119 (129)
T ss_dssp             --------------CTTSCGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHH
T ss_pred             --------------cCCcCHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                          124678999955 789999999999999999999999999998899999999876

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.84  E-value=1.1e-20  Score=141.69  Aligned_cols=118  Identities=22%  Similarity=0.262  Sum_probs=103.0

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      +++|+++|+++.+++++++++++.+|++.|.+++++.+||+|++ |+++|+||.+||++.....                
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~----------------   65 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKA----------------   65 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSS----------------
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhc----------------
Confidence            45899999964478999999999999999999999999999987 8999999999999753210                


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                  .....+++++|.+ ++++.+++++.+|++.|.+++.+.+||+|++|+++|+||++|
T Consensus        66 ------------~~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~D  120 (136)
T 3lfr_A           66 ------------DGDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIED  120 (136)
T ss_dssp             ------------SGGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHH
T ss_pred             ------------cCCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                        1124679999966 889999999999999999999999999998899999999987

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.84  E-value=5.9e-21  Score=141.91  Aligned_cols=119  Identities=20%  Similarity=0.228  Sum_probs=101.7

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (237)
                      +...+|+++|++...++++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|+++...                
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~----------------   66 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQ----------------   66 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHH----------------
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHh----------------
Confidence            4667999999975467799999999999999999999999999987 89999999999997431                


Q ss_pred             cchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                   ......++.++| +++.++.+++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus        67 -------------~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~d  122 (130)
T 3i8n_A           67 -------------SGSGQKQLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLED  122 (130)
T ss_dssp             -------------TTTTTSBHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHH
T ss_pred             -------------cCCCcCCHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHH
Confidence                         112246799999 45789999999999999999999999999998899999999876

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.84  E-value=3.9e-21  Score=147.87  Aligned_cols=121  Identities=21%  Similarity=0.244  Sum_probs=103.1

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      .+++++|.|+++++++.+++|+.+|+++|.+++++++||+|++|+++|+||.+|++++.......               
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~---------------   79 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLS---------------   79 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCC---------------
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccc---------------
Confidence            36789999988999999999999999999999999999999889999999999998753221110               


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                              .......++.++|.++++++++++++.+|++.|.+++  .+||||++|+++|+||++|
T Consensus        80 --------~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~D  135 (156)
T 3k6e_A           80 --------QEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKS  135 (156)
T ss_dssp             --------HHHHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHH
T ss_pred             --------cccccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHH
Confidence                    0112357899999999999999999999999998775  4999999999999999987

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.84  E-value=3.1e-20  Score=144.82  Aligned_cols=121  Identities=17%  Similarity=0.146  Sum_probs=103.1

Q ss_pred             CCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCccc
Q 026495           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (237)
Q Consensus        77 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~  155 (237)
                      ...+...+|+++|+++.+++++++++++.+|++.|.+++++.+||+|++ |+++|+||.+||++...             
T Consensus        36 ~~~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~-------------  102 (172)
T 3lhh_A           36 VFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI-------------  102 (172)
T ss_dssp             -------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH-------------
T ss_pred             HhccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh-------------
Confidence            3456788999999954478999999999999999999999999999987 89999999999997421             


Q ss_pred             ccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                       .....++.++| ++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||+.|
T Consensus       103 -----------------~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~D  157 (172)
T 3lhh_A          103 -----------------AGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQD  157 (172)
T ss_dssp             -----------------TTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             -----------------hcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHH
Confidence                             12256899999 88999999999999999999999999999998899999999987

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.84  E-value=1.8e-20  Score=142.22  Aligned_cols=134  Identities=81%  Similarity=1.184  Sum_probs=108.3

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      ..++++++|.+..+++++++++++.++++.|.+++++.+||+|++|+++|+||.+|++++...              ...
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~--------------~~~   68 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSG--------------DST   68 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC------------------C
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcc--------------cCc
Confidence            456899999885568899999999999999999999999999988999999999999864321              111


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      |..+.............++.++|.++++++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|
T Consensus        69 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~d  136 (152)
T 4gqw_A           69 WKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGN  136 (152)
T ss_dssp             CHHHHHHHTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHH
T ss_pred             ccchHHHHHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHH
Confidence            22233322222233457899999998899999999999999999999999999998899999999876

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.83  E-value=1.6e-20  Score=139.77  Aligned_cols=118  Identities=14%  Similarity=0.029  Sum_probs=100.8

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC-CCcEEEEEehHhHhhhccccCCCCCCCCcccccccch
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (237)
                      ++|+++|+++.+++++++++++.+|++.|.+++++.+||+++ +|+++|+||.+|++++......               
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~---------------   66 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE---------------   66 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC---------------
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc---------------
Confidence            578999986547899999999999999999999999999975 5899999999999975321100               


Q ss_pred             hhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                  ....++.++| ++++++++++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus        67 ------------~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~D  120 (130)
T 3hf7_A           67 ------------FTKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVED  120 (130)
T ss_dssp             ------------CCHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHH
T ss_pred             ------------cchhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHH
Confidence                        0124578888 66789999999999999999999999999998899999999876

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.83  E-value=2.8e-20  Score=136.25  Aligned_cols=112  Identities=21%  Similarity=0.341  Sum_probs=102.1

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (237)
                      +++++|.+  +++++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|++++..                     
T Consensus         2 ~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~---------------------   58 (122)
T 3kpb_A            2 LVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA---------------------   58 (122)
T ss_dssp             BHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHH---------------------
T ss_pred             chHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHH---------------------
Confidence            68899998  8999999999999999999999999999998899999999999986421                     


Q ss_pred             HHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                ....++.++|.++++++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|
T Consensus        59 ----------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~d  113 (122)
T 3kpb_A           59 ----------QNKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSED  113 (122)
T ss_dssp             ----------TTCCBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHH
T ss_pred             ----------hcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHH
Confidence                      1235799999999999999999999999999999999999998899999999876

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.82  E-value=4.5e-20  Score=136.67  Aligned_cols=117  Identities=19%  Similarity=0.139  Sum_probs=104.0

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      ..++++++|.+  +++++++++++.+|++.|.+++++.+||+|+ |+++|+||.+|+.+......               
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~---------------   64 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWP---------------   64 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSC---------------
T ss_pred             cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCC---------------
Confidence            45689999999  8999999999999999999999999999998 99999999999997532110               


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                   ....++.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus        65 -------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~d  119 (128)
T 3gby_A           65 -------------TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKR  119 (128)
T ss_dssp             -------------CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHH
T ss_pred             -------------cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHH
Confidence                         1125799999999999999999999999999999999999998899999999876

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.82  E-value=5.9e-20  Score=140.93  Aligned_cols=119  Identities=20%  Similarity=0.276  Sum_probs=104.7

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCccccc
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  157 (237)
                      .+...+|+++|+++.+++++++++++.+|++.|.+++++++||+|++ |+++|+||.+|+++....              
T Consensus        34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~--------------   99 (156)
T 3oi8_A           34 DFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN--------------   99 (156)
T ss_dssp             HHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC--------------
T ss_pred             ccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc--------------
Confidence            34677999999975568999999999999999999999999999987 499999999999975311              


Q ss_pred             ccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                      ....++.++|.+ +.++++++++.+|++.|.+++.+.+||+|++|+++|+||++|
T Consensus       100 ----------------~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~D  153 (156)
T 3oi8_A          100 ----------------PEQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFED  153 (156)
T ss_dssp             ----------------GGGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHH
T ss_pred             ----------------CCcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHH
Confidence                            024678999965 889999999999999999999999999998899999999876

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.82  E-value=5.8e-20  Score=142.11  Aligned_cols=125  Identities=19%  Similarity=0.248  Sum_probs=108.9

Q ss_pred             CCCCCccccccccccc-CceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccc
Q 026495           77 APSSGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (237)
Q Consensus        77 ~~~~~~~~v~~im~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~  155 (237)
                      ..++..++|+++|.+. ++++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||++.+...+          
T Consensus        18 ~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~----------   87 (165)
T 3fhm_A           18 YFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQG----------   87 (165)
T ss_dssp             CCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHG----------
T ss_pred             hHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcC----------
Confidence            5677889999999962 25899999999999999999999999999998899999999999986432100          


Q ss_pred             ccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                      ......++.++|.++++++.+++++.++++.|.+++.+.+||+|+ |+++|+||++|
T Consensus        88 ----------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~d  143 (165)
T 3fhm_A           88 ----------------AASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGD  143 (165)
T ss_dssp             ----------------GGGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHH
T ss_pred             ----------------CccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHH
Confidence                            012357899999999999999999999999999999999999997 99999999876

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.81  E-value=1.6e-19  Score=134.24  Aligned_cols=117  Identities=23%  Similarity=0.333  Sum_probs=103.9

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      ...+++++|.+  +++++++++++.+|++.|.+++.+.+||+| +|+++|+||.+|+.++....                
T Consensus         2 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~----------------   62 (133)
T 2ef7_A            2 EEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKG----------------   62 (133)
T ss_dssp             CCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT----------------
T ss_pred             CcccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcC----------------
Confidence            45789999998  799999999999999999999999999999 89999999999998643211                


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                  .....++.++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus        63 ------------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~d  118 (133)
T 2ef7_A           63 ------------KSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRD  118 (133)
T ss_dssp             ------------CCTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             ------------CCcccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHH
Confidence                        01246899999888999999999999999999999999999998899999999876

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.81  E-value=5.6e-20  Score=140.47  Aligned_cols=118  Identities=20%  Similarity=0.284  Sum_probs=104.3

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEE-cC-CCcEEEEEehHhHhhhccccCCCCCCCCccccc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv-d~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  157 (237)
                      +...+|+++|+++.+++++++++++.+|++.|.+++++.+||+ |+ +|+++|+||.+||++...               
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~---------------   81 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR---------------   81 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH---------------
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh---------------
Confidence            4567999999964478999999999999999999999999999 65 489999999999996421               


Q ss_pred             ccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                     .....++.++| ++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||++|
T Consensus        82 ---------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~d  136 (153)
T 3oco_A           82 ---------------IDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKD  136 (153)
T ss_dssp             ---------------HHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHH
T ss_pred             ---------------cCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHH
Confidence                           12257899999 88999999999999999999999999999998899999999876

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.81  E-value=2.6e-19  Score=134.66  Aligned_cols=116  Identities=16%  Similarity=0.111  Sum_probs=102.7

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCC--cEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~--~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      .++++++|.+  ++.++++++++.++++.|.+++++.+||+|++|  +++|+||.+|+++.....               
T Consensus         4 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~---------------   66 (141)
T 2rih_A            4 AIRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR---------------   66 (141)
T ss_dssp             -CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT---------------
T ss_pred             ceEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC---------------
Confidence            3589999998  899999999999999999999999999999877  999999999998743210               


Q ss_pred             chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                   .....++.++|.+++++++++ ++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus        67 -------------~~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~d  121 (141)
T 2rih_A           67 -------------LDLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRD  121 (141)
T ss_dssp             -------------CCTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             -------------CCCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHH
Confidence                         012468999999999999999 9999999999999999999998899999999876

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.81  E-value=9.9e-20  Score=138.27  Aligned_cols=125  Identities=20%  Similarity=0.228  Sum_probs=105.2

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      +..++|+++|.+..+++++++++++.+|++.|.+++++.+||+|++|+++|+||.+||++.........           
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~-----------   80 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIE-----------   80 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBC-----------
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccc-----------
Confidence            456799999996336899999999999999999999999999998899999999999997643211000           


Q ss_pred             chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                 .......++.++|.++++++.+++++.+|++.|.++++  +||+|++|+++|+||++|
T Consensus        81 -----------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~d  136 (150)
T 3lqn_A           81 -----------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRA  136 (150)
T ss_dssp             -----------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHH
T ss_pred             -----------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHH
Confidence                       00123578999999999999999999999999999886  999998899999999876

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.81  E-value=3.9e-19  Score=133.02  Aligned_cols=119  Identities=24%  Similarity=0.319  Sum_probs=104.4

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh-hccccCCCCCCCCccccc
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSMFPEV  157 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~-~~~~~~~~~~~~~~~~~~  157 (237)
                      .+...+++++|.+  +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+++ +.. .+            
T Consensus         3 ~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~-~~------------   67 (138)
T 2yzi_A            3 MDMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV-PG------------   67 (138)
T ss_dssp             CCTTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT-TC------------
T ss_pred             chhhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh-cC------------
Confidence            3467799999998  8999999999999999999999999999998899999999999973 321 10            


Q ss_pred             ccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                     .....++.++|.++++++++++++.++++.|.+++.+.+ |+|++|+++|+||.+|
T Consensus        68 ---------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~d  122 (138)
T 2yzi_A           68 ---------------LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSD  122 (138)
T ss_dssp             ---------------CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHH
T ss_pred             ---------------CcccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHH
Confidence                           012468999999999999999999999999999999999 9998899999999876

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.80  E-value=2.4e-19  Score=140.09  Aligned_cols=118  Identities=16%  Similarity=0.097  Sum_probs=102.7

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCccccc
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  157 (237)
                      .+...+|+++|+++.+++++++++++.++++.|.+++++.+||+|++ |+++|+||.+||++...               
T Consensus        32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~---------------   96 (173)
T 3ocm_A           32 TLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI---------------   96 (173)
T ss_dssp             HHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH---------------
T ss_pred             ccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh---------------
Confidence            45677999999865478999999999999999999999999999976 89999999999996421               


Q ss_pred             ccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                     .....++. + .++++++++++++.+|++.|.+++.+.+||+|++|+++|+||+.|
T Consensus        97 ---------------~~~~~~v~-~-~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~D  150 (173)
T 3ocm_A           97 ---------------TEGRVRRN-R-LRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPID  150 (173)
T ss_dssp             ---------------HHSSCCGG-G-SBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHH
T ss_pred             ---------------cCCcchhH-h-cCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHH
Confidence                           11245677 4 477889999999999999999999999999998899999999886

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.80  E-value=3.9e-19  Score=135.09  Aligned_cols=118  Identities=23%  Similarity=0.259  Sum_probs=103.7

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      ++|+++|.+.++++++++++++.++++.|.+++++.+||+|++|+++|+||.+||.+.+....                 
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-----------------   90 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGV-----------------   90 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSS-----------------
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCC-----------------
Confidence            589999987556899999999999999999999999999998899999999999997542110                 


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                .....++.++|.+++.++.+++++.++++.|.+++++.+||+|+ ++++|+||++|
T Consensus        91 ----------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~Giit~~d  145 (149)
T 3k2v_A           91 ----------DMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG-DHLLGVVHMHD  145 (149)
T ss_dssp             ----------CCTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHH
T ss_pred             ----------CcccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC-CEEEEEEEHHH
Confidence                      11246899999999999999999999999999999999999995 49999999876

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.80  E-value=5.2e-19  Score=141.94  Aligned_cols=114  Identities=19%  Similarity=0.258  Sum_probs=104.1

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHC---CCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~---~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~  156 (237)
                      +...+++++|++  +++++++++|+.+|++.|.+.   +++.+||+|++|+++|+||.+||+..                
T Consensus        51 ~~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----------------  112 (205)
T 3kxr_A           51 YSENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH----------------  112 (205)
T ss_dssp             SCTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS----------------
T ss_pred             CCcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC----------------
Confidence            456689999999  899999999999999999987   78999999999999999999999852                


Q ss_pred             cccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                       ....+++++|.++++++++++++.++++.|.+++++.+||||++|+++|+||..|
T Consensus       113 -----------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~D  167 (205)
T 3kxr_A          113 -----------------EPHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRA  167 (205)
T ss_dssp             -----------------CTTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHH
T ss_pred             -----------------CCcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHH
Confidence                             1246899999989999999999999999999999999999998899999999876

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.80  E-value=2.8e-19  Score=133.73  Aligned_cols=119  Identities=27%  Similarity=0.342  Sum_probs=104.1

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhH-hhhccccCCCCCCCCcccccc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDSISGSGRADNSMFPEVD  158 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl-~~~~~~~~~~~~~~~~~~~~~  158 (237)
                      +...+++++|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|+ .++....              
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------   68 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDK--------------   68 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTC--------------
T ss_pred             cccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhc--------------
Confidence            456799999988  79999999999999999999999999999988999999999999 7643210              


Q ss_pred             cchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcC-----CcEEEEEcCCCcEEEEEEccc
Q 026495          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK-----YRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                    .....++.++|.+++.++++++++.++++.|.+++     .+.+||+|++|+++|+||.+|
T Consensus        69 --------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~d  129 (138)
T 2p9m_A           69 --------------YTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGD  129 (138)
T ss_dssp             --------------CCSSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHH
T ss_pred             --------------ccCCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHH
Confidence                          11246799999988999999999999999999999     999999998899999999876

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.79  E-value=5.2e-19  Score=135.90  Aligned_cols=120  Identities=23%  Similarity=0.244  Sum_probs=104.3

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (237)
                      .+..++|+++|.+  . +++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||++......             
T Consensus        13 ~l~~~~v~~im~~--~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------------   76 (159)
T 3fv6_A           13 KLKKLQVKDFQSI--P-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ-------------   76 (159)
T ss_dssp             HHTTCBGGGSCBC--C-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCS-------------
T ss_pred             HHhhCCHHHHcCC--C-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccC-------------
Confidence            3466799999987  4 59999999999999999999999999998899999999999997531110             


Q ss_pred             cchhhHHHHHHHHHhhcCCcccccccc--CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCC---cEEEEEEccc
Q 026495          159 STWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADG---WNYHKRKCSK  228 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~---~~iGvIt~~d  228 (237)
                                    .....++.++|.+  ++.++.+++++.+|++.|.+++++.+||+|++|   +++|+||++|
T Consensus        77 --------------~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~d  137 (159)
T 3fv6_A           77 --------------ELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTN  137 (159)
T ss_dssp             --------------CTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHH
T ss_pred             --------------cccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHH
Confidence                          1124689999988  888999999999999999999999999999777   9999999876

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.79  E-value=5.4e-19  Score=129.83  Aligned_cols=115  Identities=19%  Similarity=0.230  Sum_probs=100.8

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      ++++++|.+  +++++++++++.++++.|.+++.+.+||+| +|+++|+||.+|++++.....                 
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~-----------------   60 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD-----------------   60 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC-----------------
T ss_pred             CCHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCC-----------------
Confidence            368899998  899999999999999999999999999999 899999999999986432110                 


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                .....++.++|.+++.++++++++.++++.|.+++.+.+||+|+ |+++|+||++|
T Consensus        61 ----------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~d  115 (125)
T 1pbj_A           61 ----------DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATD  115 (125)
T ss_dssp             ----------CTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHH
T ss_pred             ----------cccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHH
Confidence                      01246799999988999999999999999999999999999997 99999999876

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.79  E-value=1.5e-18  Score=136.57  Aligned_cols=119  Identities=24%  Similarity=0.261  Sum_probs=104.6

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccch
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (237)
                      .++++++|.+  +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+||++.......               
T Consensus         8 ~~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~---------------   70 (184)
T 1pvm_A            8 FMRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK---------------   70 (184)
T ss_dssp             CCBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC---------------
T ss_pred             ccCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc---------------
Confidence            3689999998  89999999999999999999999999999988999999999999875321100               


Q ss_pred             hhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                 .....++.++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||++|
T Consensus        71 -----------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~d  126 (184)
T 1pvm_A           71 -----------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTD  126 (184)
T ss_dssp             -----------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHH
T ss_pred             -----------CcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHH
Confidence                       11246799999988999999999999999999999999999998799999999876

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.79  E-value=7.2e-19  Score=131.16  Aligned_cols=117  Identities=25%  Similarity=0.345  Sum_probs=101.0

Q ss_pred             ccccccccc-CceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        84 ~v~~im~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      +++++|.++ .+++++++++++.+|++.|.+++.+.+||+| +|+++|+||.+|+++.....+.                
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~----------------   69 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK----------------   69 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS----------------
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCC----------------
Confidence            899999821 2799999999999999999999999999999 7999999999999853221110                


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                .....++.++|.+++.++++++++.++++.|.+++.+.+||+| +|+++|+||++|
T Consensus        70 ----------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~d  124 (135)
T 2rc3_A           70 ----------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGD  124 (135)
T ss_dssp             ----------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             ----------CcccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHH
Confidence                      0124689999999999999999999999999999999999999 799999999876

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.78  E-value=5.2e-19  Score=131.51  Aligned_cols=118  Identities=20%  Similarity=0.289  Sum_probs=101.7

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHh-hhccccCCCCCCCCccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      ...+++++|.+  +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|++ ++.... .             
T Consensus         6 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-~-------------   69 (133)
T 1y5h_A            6 TMTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAG-L-------------   69 (133)
T ss_dssp             --CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGT-C-------------
T ss_pred             hhcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcC-C-------------
Confidence            34589999998  799999999999999999999999999998889999999999998 332211 0             


Q ss_pred             chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                   .....++.++|.++++++++++++.++++.|.+++.+.+||+|+ |+++|+||++|
T Consensus        70 -------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~d  124 (133)
T 1y5h_A           70 -------------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEAD  124 (133)
T ss_dssp             -------------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHH
T ss_pred             -------------CccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHH
Confidence                         01246799999889999999999999999999999999999996 99999999876

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.78  E-value=9.5e-19  Score=134.63  Aligned_cols=126  Identities=26%  Similarity=0.244  Sum_probs=104.0

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      ..++|+++|.+  +++++++++++.+|++.|.+++.+.+||+|++|+++|+||.+||+++.........           
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~-----------   69 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSA-----------   69 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC--------------
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccc-----------
Confidence            35689999998  79999999999999999999999999999988999999999999875321100000           


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                              .........++.++|.++++++.+++++.+|++.|.+++.+.+||+|+ |+++|+||++|
T Consensus        70 --------~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~d  128 (160)
T 2o16_A           70 --------QGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSD  128 (160)
T ss_dssp             --------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHH
T ss_pred             --------cccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHH
Confidence                    000012356899999999999999999999999999999999999996 99999999876

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.78  E-value=1.2e-18  Score=133.16  Aligned_cols=126  Identities=21%  Similarity=0.249  Sum_probs=103.5

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (237)
                      .+..++++++|.+..+++++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+++........           
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~-----------   75 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERI-----------   75 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSB-----------
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhccccc-----------
Confidence            346779999998533688999999999999999999999999999889999999999999754321000           


Q ss_pred             cchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                         .        .......++.++|.++++++++++++.++++.|.++++  +||+|++|+++|+||++|
T Consensus        76 ---~--------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~d  132 (157)
T 2emq_A           76 ---E--------FERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRRE  132 (157)
T ss_dssp             ---C--------GGGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHH
T ss_pred             ---c--------hHHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHH
Confidence               0        00112568999999999999999999999999999987  999998899999999876

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.78  E-value=1.7e-18  Score=132.68  Aligned_cols=136  Identities=24%  Similarity=0.357  Sum_probs=106.5

Q ss_pred             CCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCe-EEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccc
Q 026495           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG-FPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (237)
Q Consensus        77 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~-~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~  155 (237)
                      .......+++++|.+  +++++++++++.+|++.|.+++.+. +||+|++ +++|+||.+||+++.....     .....
T Consensus        10 ~~~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~-----~~~~~   81 (157)
T 1o50_A           10 HHHMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHF-----FGFIP   81 (157)
T ss_dssp             CTTCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHH-----HCCCC
T ss_pred             hhhhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhH-----Hhhhc
Confidence            345677899999998  8999999999999999999999999 9999987 9999999999997532100     00000


Q ss_pred             ccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .       ...+..........++.++|.+ ++++++++++.+|++.|.+++++.+||+|++|+++|+||++|
T Consensus        82 ~-------~~~~~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~d  146 (157)
T 1o50_A           82 K-------EELIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLE  146 (157)
T ss_dssp             --------------CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             c-------HHHHHHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHH
Confidence            0       0000000001235679999998 999999999999999999999999999998899999999876

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.76  E-value=2.7e-18  Score=129.04  Aligned_cols=119  Identities=20%  Similarity=0.277  Sum_probs=99.1

Q ss_pred             cccccc---cccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495           82 VYTVGD---FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (237)
Q Consensus        82 ~~~v~~---im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (237)
                      ..++++   +|.+  +++++++++++.+|++.|.+++++.+||+|++|+++|+|+.+|+.+.......            
T Consensus         7 ~~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~------------   72 (144)
T 2nyc_A            7 KIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY------------   72 (144)
T ss_dssp             GSBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC--------------
T ss_pred             hcchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhccccc------------
Confidence            346666   7877  79999999999999999999999999999988999999999999875321100            


Q ss_pred             cchhhHHHHHHHHHhhcCCcccccccc------CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          159 STWKTFNEVQKLLSKTNGKMVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                    .....++.++|.+      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus        73 --------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~d  134 (144)
T 2nyc_A           73 --------------NDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSD  134 (144)
T ss_dssp             ----------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             --------------ccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHH
Confidence                          0124678888865      5789999999999999999999999999998899999999876

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.76  E-value=6.4e-18  Score=136.24  Aligned_cols=113  Identities=26%  Similarity=0.274  Sum_probs=102.3

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      ...+++++|.+  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+.+..                   
T Consensus        11 ~~~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~-------------------   69 (213)
T 1vr9_A           11 HHMKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD-------------------   69 (213)
T ss_dssp             --CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC-------------------
T ss_pred             cccCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhc-------------------
Confidence            34578899998  899999999999999999999999999999889999999999998642                   


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                    ...++.++|.+++.++++++++.+|+++|.+++++.+||+|++|+++|+||.+|
T Consensus        70 --------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~D  123 (213)
T 1vr9_A           70 --------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHD  123 (213)
T ss_dssp             --------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHH
T ss_pred             --------------CCCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHH
Confidence                          136799999999999999999999999999999999999997799999999876

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.76  E-value=6.8e-18  Score=141.96  Aligned_cols=177  Identities=16%  Similarity=0.233  Sum_probs=129.8

Q ss_pred             hhccCCEEEEecCccchhHHH-hccCCCceEEecCC-ce-eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHH
Q 026495           29 FALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSS-AV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (237)
Q Consensus        29 i~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp-~~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~  105 (237)
                      +...+.++....+...+.+.+ ......+++..+.. .. ......+...........+++++|.+  ++.++++++++.
T Consensus        99 m~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~  176 (296)
T 3ddj_A           99 MTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDEIFPVKVFMST--KVQTIYKEVRLD  176 (296)
T ss_dssp             SEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSCCCCBHHHHSBC--SCCCEETTSBHH
T ss_pred             ccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhcccccccHHHhhcC--CCeEECCCCCHH
Confidence            444444444333333445555 56667788885332 22 33333333322333456699999988  799999999999


Q ss_pred             HHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhcCCcccccccc
Q 026495          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP  185 (237)
Q Consensus       106 ~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~  185 (237)
                      ++++.|.+++.+.+||+|++|+++|+||.+|+++.....                   +..+..  ......++.++|.+
T Consensus       177 ~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-------------------~~~~~~--~~~~~~~v~~~m~~  235 (296)
T 3ddj_A          177 QAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA-------------------VDKLDP--DYFYGKVVKDVMVT  235 (296)
T ss_dssp             HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH-------------------HHHTCT--HHHHTCBHHHHSBC
T ss_pred             HHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH-------------------HhhcCh--hhhcCcCHHHHhCC
Confidence            999999999999999999889999999999999753100                   000000  01235789999999


Q ss_pred             CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       186 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||++|
T Consensus       236 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~D  278 (296)
T 3ddj_A          236 NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERD  278 (296)
T ss_dssp             CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHH
Confidence            9999999999999999999999999999998899999999876

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.76  E-value=1.7e-18  Score=132.86  Aligned_cols=126  Identities=16%  Similarity=0.164  Sum_probs=104.6

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (237)
                      .+..++|+++|.++++++++++++++.+|++.|.+++++.+||+|++|+++|+||.+||++.........          
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~----------   79 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIE----------   79 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBC----------
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccc----------
Confidence            4566799999986446889999999999999999999999999998899999999999987543211000          


Q ss_pred             cchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                  .......++.++|.+++.++.+++++.++++.|.++++  +||+|++|+++|+||++|
T Consensus        80 ------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~d  135 (159)
T 1yav_A           80 ------------FEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRV  135 (159)
T ss_dssp             ------------GGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHH
T ss_pred             ------------hhhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHH
Confidence                        00123568999999999999999999999999999876  999998899999999876

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.75  E-value=4.5e-18  Score=130.10  Aligned_cols=118  Identities=22%  Similarity=0.326  Sum_probs=101.7

Q ss_pred             cccccccccc----CceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495           83 YTVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (237)
Q Consensus        83 ~~v~~im~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (237)
                      .+|+++|.+.    .+++++++++++.+|++.|.+++++.+||++ +|+++|+||.+|+++.+...+.            
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~------------   73 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQER------------   73 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTC------------
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccC------------
Confidence            4799999863    3579999999999999999999999999965 7999999999999875432111            


Q ss_pred             cchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                    .....++.++|.+++.++.+++++.++++.|.+++++.+||+| +|+++|+||++|
T Consensus        74 --------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~d  128 (157)
T 4fry_A           74 --------------SSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGD  128 (157)
T ss_dssp             --------------CSSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             --------------CccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHH
Confidence                          0125789999999999999999999999999999999999999 799999999876

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.75  E-value=6.7e-18  Score=132.29  Aligned_cols=142  Identities=18%  Similarity=0.216  Sum_probs=104.7

Q ss_pred             CCcccccccccccCc--eeEE--cCCCCHHHHHHHHHHCCCCeEEEE--cCCCcEEEEEehHhHhhhccccCCCCC---C
Q 026495           80 SGVYTVGDFMTTKEE--LHVV--KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGRA---D  150 (237)
Q Consensus        80 ~~~~~v~~im~~~~~--~~~v--~~~~~l~~~~~~~~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~---~  150 (237)
                      +...+|+++|.+..+  ++++  .+++++.+|++.|.+++++.+||+  |++|+++|+||..|+++..........   .
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~   87 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS   87 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccc
Confidence            456799999998211  6778  999999999999999999999999  778999999999999875432110000   0


Q ss_pred             CCcccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .............      ........++.++|.++++++.+++++.+|++.|.+++.+.+||+| +|+++|+||++|
T Consensus        88 ~~~~~~~~~~~~~------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~d  158 (185)
T 2j9l_A           88 TSIIYFTEHSPPL------PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKD  158 (185)
T ss_dssp             TCEEECSSSCCCC------CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             cceeecccCCccc------ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHH
Confidence            0000000000000      0001224679999988899999999999999999999999999999 899999999876

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.74  E-value=6.9e-18  Score=129.61  Aligned_cols=123  Identities=18%  Similarity=0.282  Sum_probs=101.8

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC--CCcEEEEEehHhHhhhccccCCCCCCCCccccc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  157 (237)
                      ...++|+++|.+  +++++++++++.+|++.|.+++++.+||+|+  +|+++|+||.+||.+.........         
T Consensus        10 ~~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~---------   78 (164)
T 2pfi_A           10 SHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSR---------   78 (164)
T ss_dssp             CCSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC--------------
T ss_pred             ccCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhcccc---------
Confidence            456799999998  8999999999999999999999999999996  699999999999987532110000         


Q ss_pred             ccchhhHHHHHHHHHhhcCCccccccccC------ceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPA------PVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                    ......++.++|.++      +.++.+++++.++++.|.+++.+.+||+| +|+++|+||++|
T Consensus        79 --------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~d  140 (164)
T 2pfi_A           79 --------------APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVE  140 (164)
T ss_dssp             ----------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             --------------CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHH
Confidence                          001134677777665      68899999999999999999999999999 799999999876

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.74  E-value=9.3e-18  Score=141.22  Aligned_cols=115  Identities=24%  Similarity=0.319  Sum_probs=104.7

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHC-----CCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCc
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  153 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~  153 (237)
                      .....+|+++|++  +++++++++++.++++.|.++     +++.+||+|++|+++|+||.+|++..             
T Consensus       133 ~~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~-------------  197 (286)
T 2oux_A          133 HYEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN-------------  197 (286)
T ss_dssp             TSCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS-------------
T ss_pred             cCChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC-------------
Confidence            4467799999998  899999999999999999987     78899999988999999999999853             


Q ss_pred             ccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                          ....++.++|.++++++++++++.++++.|.+++.+.+||||++|+++|+||..|
T Consensus       198 --------------------~~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~D  252 (286)
T 2oux_A          198 --------------------DDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDD  252 (286)
T ss_dssp             --------------------CTTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHH
T ss_pred             --------------------CCCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHH
Confidence                                1246899999998999999999999999999999999999998899999999876

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.74  E-value=1.8e-17  Score=136.14  Aligned_cols=143  Identities=20%  Similarity=0.248  Sum_probs=106.5

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCC-------------
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR-------------  148 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~-------------  148 (237)
                      ..+|+++|.+  +++++++++++.+|++.|.+++++++||+|++|+++|++|..|+++.+.......             
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~   83 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNIL   83 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHH
Confidence            4589999998  8999999999999999999999999999998899999999999997653221000             


Q ss_pred             ------------C----CCCcc------cc------------cccc----------------------------------
Q 026495          149 ------------A----DNSMF------PE------------VDST----------------------------------  160 (237)
Q Consensus       149 ------------~----~~~~~------~~------------~~~~----------------------------------  160 (237)
                                  .    ...+.      ..            .++.                                  
T Consensus        84 ~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~~  163 (245)
T 3l2b_A           84 DTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKN  163 (245)
T ss_dssp             HHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHc
Confidence                        0    00000      00            0000                                  


Q ss_pred             --------hhhHHHHHHHHHhhcCCccccccc-cCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          161 --------WKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       161 --------~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                              ..++.. ...  .....+++++|+ +++.++++++++.+++++|.+++++.+||+|++|+++|+||++|-
T Consensus       164 ~~~~i~t~~d~~~~-~~~--~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl  238 (245)
T 3l2b_A          164 NITVITTPHDSFTA-SRL--IVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHL  238 (245)
T ss_dssp             TCEEEECSSCHHHH-HHH--GGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC--
T ss_pred             CCeEEEeCCChHHH-HHH--HhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHh
Confidence                    000110 000  122467999999 889999999999999999999999999999988999999999873

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.73  E-value=2.4e-17  Score=138.07  Aligned_cols=113  Identities=31%  Similarity=0.410  Sum_probs=103.2

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHC-----CCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~  155 (237)
                      ...+++++|++  +++++++++++.++++.|.++     ++..+||+|++|+++|+||.+|++..               
T Consensus       133 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~---------------  195 (278)
T 2yvy_A          133 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---------------  195 (278)
T ss_dssp             CTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS---------------
T ss_pred             CcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC---------------
Confidence            45689999998  899999999999999999986     78999999988999999999999852               


Q ss_pred             ccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                        ....++.++|.++++++++++++.++++.|.+++.+.+||||++|+++|+||..|
T Consensus       196 ------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~D  250 (278)
T 2yvy_A          196 ------------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDD  250 (278)
T ss_dssp             ------------------CTTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             ------------------CCCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHH
Confidence                              1246899999888999999999999999999999999999998899999999876

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.73  E-value=8.5e-17  Score=135.24  Aligned_cols=168  Identities=20%  Similarity=0.224  Sum_probs=126.2

Q ss_pred             hhccCCEEEEecCccchhHHH-hccCCCceEEecCCce-eeeehhhhcccCCC------------CCcccccccccccCc
Q 026495           29 FALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV-FASGTLTANSAAPS------------SGVYTVGDFMTTKEE   94 (237)
Q Consensus        29 i~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~-~~~~~~~~~~~~~~------------~~~~~v~~im~~~~~   94 (237)
                      +...++++-...+.....+.+ ......+++.. .... ..+...+.......            ....+++++|.+  +
T Consensus        26 m~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~  102 (296)
T 3ddj_A           26 MIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTP--N  102 (296)
T ss_dssp             CEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEE--S
T ss_pred             ccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-CeEEEEEeHHHHHHHhcccccccccchhhHHHhcccHHHhccC--C
Confidence            444555443333333334444 45556677776 3222 33333333221110            125689999998  8


Q ss_pred             eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhh
Q 026495           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT  174 (237)
Q Consensus        95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (237)
                      +.++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++....                             ..
T Consensus       103 ~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~-----------------------------~~  153 (296)
T 3ddj_A          103 PVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD-----------------------------LD  153 (296)
T ss_dssp             CCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG-----------------------------SC
T ss_pred             CEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhc-----------------------------cc
Confidence            9999999999999999999999999999988999999999999975321                             11


Q ss_pred             cCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       175 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ...++.++|.+++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|
T Consensus       154 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~d  207 (296)
T 3ddj_A          154 EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVN  207 (296)
T ss_dssp             CCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             ccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHH
Confidence            245899999989999999999999999999999999999998899999999876

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.72  E-value=4.6e-17  Score=134.25  Aligned_cols=147  Identities=19%  Similarity=0.209  Sum_probs=106.6

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC--CcEEEEEehHhHhhhccccC--CCC---C--
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALDSISG--SGR---A--  149 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~--~~~~Givt~~dl~~~~~~~~--~~~---~--  149 (237)
                      ....++|+++|++  +++++.+++++.+|.++|.+++++.+||||++  ++++|+|+..||++++....  ...   .  
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~   86 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAA   86 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCC
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhh
Confidence            4567899999999  89999999999999999999999999999964  68999999999987543210  000   0  


Q ss_pred             ------------------CCCc--ccc-c---------------------------------------------------
Q 026495          150 ------------------DNSM--FPE-V---------------------------------------------------  157 (237)
Q Consensus       150 ------------------~~~~--~~~-~---------------------------------------------------  157 (237)
                                        .+..  +.. .                                                   
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (250)
T 2d4z_A           87 EADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASR  166 (250)
T ss_dssp             CBCCC---------------------------------------------------------------------------
T ss_pred             cccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcc
Confidence                              0000  000 0                                                   


Q ss_pred             ccchhhHHHHHHHHHhhcCCcc--c-cccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          158 DSTWKTFNEVQKLLSKTNGKMV--G-DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v--~-~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....-...+...+.......+|  . .+|++.+++|.++++|.++..+|...|++++||++ +|+++|+||++|
T Consensus       167 ~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkD  239 (250)
T 2d4z_A          167 FEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAE  239 (250)
T ss_dssp             CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             cccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHH
Confidence            0000011111222222234455  3 47999999999999999999999999999999998 799999999987

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.72  E-value=7e-17  Score=134.55  Aligned_cols=195  Identities=16%  Similarity=0.144  Sum_probs=124.5

Q ss_pred             cCCEEEEecCccchhHHH-hccCCCceEEecC-Cc-eeeeehhhhc-ccCC--CCCcccccccccccCceeEEcCCCCHH
Q 026495           32 QLPCLLLSRPGCRVFSVL-ATSSDRVSALRRS-SA-VFASGTLTAN-SAAP--SSGVYTVGDFMTTKEELHVVKPTTTVD  105 (237)
Q Consensus        32 ~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~s-p~-~~~~~~~~~~-~~~~--~~~~~~v~~im~~~~~~~~v~~~~~l~  105 (237)
                      .+..+....+...+.+.+ ......+++..+. .. .......+.. ....  .....+++++|.+  ++.++++++++.
T Consensus        69 ~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~  146 (282)
T 2yzq_A           69 DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQR--YVSIVWEGTPLK  146 (282)
T ss_dssp             CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSBS--CCCCEETTSBHH
T ss_pred             CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCcccCcHHHHhCC--CCEEECCCCCHH
Confidence            344433333344445555 5556677887643 22 2323332222 2221  2346789999987  789999999999


Q ss_pred             HHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCC-CCCcccccccc-hhhHHHHH-HHHHhhcCCccccc
Q 026495          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRA-DNSMFPEVDST-WKTFNEVQ-KLLSKTNGKMVGDL  182 (237)
Q Consensus       106 ~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~v~~i  182 (237)
                      ++++.|.+++.+.+||+|++|+++|++|..|+++.......... .....+...+. ........ .........+++++
T Consensus       147 ~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  226 (282)
T 2yzq_A          147 AALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEI  226 (282)
T ss_dssp             HHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------------------CCCBGGGT
T ss_pred             HHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHh
Confidence            99999999999999999988999999999999842110000000 00000000000 00000000 00011235789999


Q ss_pred             cccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          183 MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       183 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      |.+++.++.+++++.+|+++|.+++++++||+|++|+++|+||++|
T Consensus       227 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~D  272 (282)
T 2yzq_A          227 MTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFD  272 (282)
T ss_dssp             CBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHH
T ss_pred             cCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHH
Confidence            9999999999999999999999999999999997789999999876

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.72  E-value=2.9e-17  Score=136.49  Aligned_cols=180  Identities=14%  Similarity=0.222  Sum_probs=126.2

Q ss_pred             hhccCCEEEEecCccchhHHH-hccCCCceEEecCCc-e-eeeehhhhcc-cCCCCCcccccccccccCceeEEcCCCCH
Q 026495           29 FALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSA-V-FASGTLTANS-AAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (237)
Q Consensus        29 i~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~-~-~~~~~~~~~~-~~~~~~~~~v~~im~~~~~~~~v~~~~~l  104 (237)
                      +...+.++....+..++.+.+ ......+++..+... . ......+... ........+++++|.+  ++.++++++++
T Consensus        90 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l  167 (280)
T 3kh5_A           90 MEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITR--DVIVATPGERL  167 (280)
T ss_dssp             SBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBC--SCCCBCTTCBH
T ss_pred             cCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCC--CCeEECCCCcH
Confidence            444444444333334455555 555667788753321 1 3333332221 1122234589999988  79999999999


Q ss_pred             HHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHH-HHHhhcCCcccccc
Q 026495          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK-LLSKTNGKMVGDLM  183 (237)
Q Consensus       105 ~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~im  183 (237)
                      .++++.|.+++.+.+||+ ++|+++|+||.+|+++......                 .+..+.. ........++.++|
T Consensus       168 ~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~~-----------------~~~~~~~~~~~~~~~~~v~~~m  229 (280)
T 3kh5_A          168 KDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSDW-----------------AFNHMQTGNVREITNVRMEEIM  229 (280)
T ss_dssp             HHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSHH-----------------HHHHHHSCCTHHHHHCBHHHHS
T ss_pred             HHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhhh-----------------hhhhhcccchhhhhCCcHHHHh
Confidence            999999999999999999 5799999999999997532100                 0000000 00011246899999


Q ss_pred             ccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          184 TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       184 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .+++.++++++++.+|++.|.+++++++||+|++|+++|+||++|
T Consensus       230 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~d  274 (280)
T 3kh5_A          230 KRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKD  274 (280)
T ss_dssp             BSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHH
T ss_pred             cCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHH
Confidence            999999999999999999999999999999998889999999876

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.71  E-value=2.3e-16  Score=131.35  Aligned_cols=120  Identities=23%  Similarity=0.237  Sum_probs=100.3

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh-hccccCCCCCCCCccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~-~~~~~~~~~~~~~~~~~~~~  159 (237)
                      ...+++++|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|++|.+|+.+ ......              
T Consensus        58 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~--------------  121 (282)
T 2yzq_A           58 DEEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSE--------------  121 (282)
T ss_dssp             ------CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCS--------------
T ss_pred             ccCCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccC--------------
Confidence            45689999998  7899999999999999999999999999998899999999999987 532110              


Q ss_pred             chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                                   .....++.++|.+++.++++++++.++++.|.+++++.+||+|++|+++|+||.+|-
T Consensus       122 -------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl  178 (282)
T 2yzq_A          122 -------------KYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDL  178 (282)
T ss_dssp             -------------GGGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGG
T ss_pred             -------------CcccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHH
Confidence                         011457889998889999999999999999999999999999988999999998774

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.70  E-value=1.8e-16  Score=131.74  Aligned_cols=116  Identities=24%  Similarity=0.435  Sum_probs=102.7

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccch
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (237)
                      ..+++++|.+  ++.++++++++.++++.|.+++++++||+|++|+++|++|.+|+++.+...                 
T Consensus        83 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------  143 (280)
T 3kh5_A           83 NEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDK-----------------  143 (280)
T ss_dssp             TSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGG-----------------
T ss_pred             hhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhc-----------------
Confidence            4589999998  899999999999999999999999999999899999999999998753211                 


Q ss_pred             hhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                 .....++.++|.+++.++++++++.++++.|.+++++.+||++ +|+++|+||.+|
T Consensus       144 -----------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~Givt~~d  198 (280)
T 3kh5_A          144 -----------IDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITSTD  198 (280)
T ss_dssp             -----------SCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             -----------CCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHH
Confidence                       0123478999999999999999999999999999999999994 899999999876

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.70  E-value=8.4e-17  Score=136.89  Aligned_cols=120  Identities=20%  Similarity=0.285  Sum_probs=104.4

Q ss_pred             Cccccccc---ccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccccc
Q 026495           81 GVYTVGDF---MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (237)
Q Consensus        81 ~~~~v~~i---m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  157 (237)
                      ...+++++   |.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++++...             
T Consensus       185 ~~~~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-------------  249 (323)
T 3t4n_C          185 LKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG-------------  249 (323)
T ss_dssp             CCSBGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTT-------------
T ss_pred             hhCcHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhc-------------
Confidence            44588999   877  799999999999999999999999999999889999999999999753210             


Q ss_pred             ccchhhHHHHHHHHHhhcCCcccccccc------CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                   .......++.++|.+      ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|
T Consensus       250 -------------~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~D  313 (323)
T 3t4n_C          250 -------------IYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSD  313 (323)
T ss_dssp             -------------HHHHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHH
T ss_pred             -------------hhhhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHH
Confidence                         001235689999987      7899999999999999999999999999998899999999876

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.69  E-value=4.7e-17  Score=150.67  Aligned_cols=148  Identities=15%  Similarity=0.065  Sum_probs=104.4

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHH-HCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCC----Ccc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILV-EKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN----SMF  154 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~-~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~----~~~  154 (237)
                      ..+++|+|+|++++++++++++++++|+.+.|. +++++.+||+|++|+++|+||.+|+.+...........+    ...
T Consensus       450 ~~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          450 SPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             CTTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC--------------
T ss_pred             cccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence            367899999995548999999999999999999 799999999998899999999999997653321100000    000


Q ss_pred             cccccchhhHHHHHHHHHh-----------------hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC
Q 026495          155 PEVDSTWKTFNEVQKLLSK-----------------TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD  217 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  217 (237)
                      ... +..+..+........                 ....+++++|++++.++++++++.++++.|.+++.+++||+ ++
T Consensus       530 ~~~-~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~  607 (632)
T 3org_A          530 VLL-DAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ER  607 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ET
T ss_pred             ecc-CHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-EC
Confidence            000 000000000000000                 11224889999999999999999999999999999999999 58


Q ss_pred             CcEEEEEEcccC
Q 026495          218 GWNYHKRKCSKG  229 (237)
Q Consensus       218 ~~~iGvIt~~d~  229 (237)
                      |+++|+||++|=
T Consensus       608 G~lvGIVT~~Dl  619 (632)
T 3org_A          608 GKLVGIVEREDV  619 (632)
T ss_dssp             TEEEEEEEGGGT
T ss_pred             CEEEEEEehhhH
Confidence            999999999983

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.68  E-value=2.2e-16  Score=141.50  Aligned_cols=115  Identities=30%  Similarity=0.397  Sum_probs=104.1

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHC-----CCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCc
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  153 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~  153 (237)
                      .....+++++|++  +++++++++++.++++.|.++     +++.+||+|++++++|+||.+|++..             
T Consensus       151 ~~~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~-------------  215 (473)
T 2zy9_A          151 RYEEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------------  215 (473)
T ss_dssp             TSCTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS-------------
T ss_pred             cCCCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC-------------
Confidence            3456789999998  899999999999999999986     57899999988999999999999852             


Q ss_pred             ccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                          ..+.+++++|++++.++++++++.++++.|.+++.+.+||||++|+++|+||.+|
T Consensus       216 --------------------~~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~D  270 (473)
T 2zy9_A          216 --------------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDD  270 (473)
T ss_dssp             --------------------CTTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             --------------------CCCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHh
Confidence                                1257899999988999999999999999999999999999999999999999876

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.65  E-value=9e-16  Score=131.08  Aligned_cols=119  Identities=18%  Similarity=0.189  Sum_probs=101.6

Q ss_pred             cccccc---cccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495           82 VYTVGD---FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (237)
Q Consensus        82 ~~~v~~---im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (237)
                      ..++++   +|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++.......            
T Consensus       181 ~~~v~~l~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~------------  246 (334)
T 2qrd_G          181 RVPLNQMTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDY------------  246 (334)
T ss_dssp             CCBGGGSSCSBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCG------------
T ss_pred             hCcHHHhCCcccC--CceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhcccc------------
Confidence            457888   4877  78999999999999999999999999999988999999999999975321100            


Q ss_pred             cchhhHHHHHHHHHhhcCCcccccccc------CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          159 STWKTFNEVQKLLSKTNGKMVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                    .....++.++|.+      +++++++++++.++++.|.+++++.+||+|++|+++|+||++|
T Consensus       247 --------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~d  308 (334)
T 2qrd_G          247 --------------SNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLAD  308 (334)
T ss_dssp             --------------GGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHH
T ss_pred             --------------ccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHH
Confidence                          0124578888874      7889999999999999999999999999998899999999876

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.62  E-value=2.4e-15  Score=128.28  Aligned_cols=109  Identities=25%  Similarity=0.309  Sum_probs=93.4

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++........                          
T Consensus       202 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~--------------------------  255 (330)
T 2v8q_E          202 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYN--------------------------  255 (330)
T ss_dssp             SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCC--------------------------
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccc--------------------------
Confidence            688999999999999999999999999999889999999999999764322110                          


Q ss_pred             hcCCcccccc------ccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          174 TNGKMVGDLM------TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       174 ~~~~~v~~im------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ....++.++|      .+++.++.+++++.++++.|.+++++++||+|++|+++|+||.+|
T Consensus       256 ~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~D  316 (330)
T 2v8q_E          256 NLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSD  316 (330)
T ss_dssp             CCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             cccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHH
Confidence            0124566666      478899999999999999999999999999998899999999876

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.62  E-value=7.9e-16  Score=139.75  Aligned_cols=118  Identities=16%  Similarity=0.179  Sum_probs=101.6

Q ss_pred             CCcccccccccccCceeEEcCC-CCHHHHHHHHHHCCCCeEEEEc-CCCcEEEEEehHhHhhhccccCCCCCCCCccccc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPT-TTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~-~~l~~~~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  157 (237)
                      +...+|+++|.+  +++++.++ +++.+++++|.+++++++||+| ++|+++|+||.+||++.+...             
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~-------------  445 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM-------------  445 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH-------------
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc-------------
Confidence            446899999998  89999999 9999999999999999999999 789999999999998643210             


Q ss_pred             ccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC----CcEEEEEEccc
Q 026495          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD----GWNYHKRKCSK  228 (237)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----~~~iGvIt~~d  228 (237)
                                    ......+++++|.++++++++++++.+++++|.++++  +||||++    |+++|+||+.|
T Consensus       446 --------------~~~~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~D  504 (527)
T 3pc3_A          446 --------------NRQQSDPAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLD  504 (527)
T ss_dssp             --------------CCCTTSBGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHH
T ss_pred             --------------cCcCCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHH
Confidence                          0123578999999999999999999999999977664  7999973    89999999876

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.60  E-value=2.5e-15  Score=135.64  Aligned_cols=111  Identities=23%  Similarity=0.388  Sum_probs=99.5

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC--CCcEEEEEehHhHhhhccccCCCCCCCCcccccccch
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (237)
                      +.+++|.+  +++++++++++.+++++|.+++++.+||+|+  +++++|+||.+||+..                     
T Consensus       114 ~~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---------------------  170 (511)
T 3usb_A          114 RSESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---------------------  170 (511)
T ss_dssp             TSSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---------------------
T ss_pred             cccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---------------------
Confidence            44566777  7899999999999999999999999999998  8999999999999741                     


Q ss_pred             hhHHHHHHHHHhhcCCcccccccc-CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          162 KTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                 ...+.++.++|++ +++++++++++.+++++|.+++.+.+||||++|+++|+||++|
T Consensus       171 -----------~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~D  227 (511)
T 3usb_A          171 -----------QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKD  227 (511)
T ss_dssp             -----------CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             -----------ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHH
Confidence                       1125789999997 8899999999999999999999999999999999999999875

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.57  E-value=1.1e-15  Score=137.42  Aligned_cols=165  Identities=18%  Similarity=0.229  Sum_probs=111.7

Q ss_pred             CcchhhhhccCCEEEEec---CccchhHHHhccCCCceEEecCCceeeeehhhhcccCCCCCcccccccccccCceeEEc
Q 026495           23 TSGRTSFALQLPCLLLSR---PGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVK   99 (237)
Q Consensus        23 ~~~~~ai~~~v~~li~~~---~~~~v~~~~~~~~~~v~v~~~sp~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~   99 (237)
                      ......+..++|++....   +...+...+ +...++.++..+-........+..       -.+++++|.+  ++++++
T Consensus        34 t~lt~~i~l~iPivsa~MdtVTe~~ma~a~-a~~GGiGvI~~n~s~e~qa~~V~~-------Vk~~~~~m~~--d~v~v~  103 (496)
T 4fxs_A           34 TRLTKNIALNIPMVSASMDTVTEARLAIAL-AQEGGIGFIHKNMSIEQQAAQVHQ-------VKIFEAGVVT--HPVTVR  103 (496)
T ss_dssp             EEEETTEEESSSEEECCCTTTCSHHHHHHH-HHHTCEEEECSSSCHHHHHHHHHH-------HHHCCC--CB--CCCCBC
T ss_pred             ceeccccccCCCceecCcchhhHHHHHHHH-HHcCCcceecCCCCHHHHHHHHHh-------cccccccccc--CceEEC
Confidence            334456778888776432   122222222 333445555422111111111111       1355678988  899999


Q ss_pred             CCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhcCCcc
Q 026495          100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMV  179 (237)
Q Consensus       100 ~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  179 (237)
                      +++++.+++++|.+++++.+||+|++++++|+||.+||+..                                .....++
T Consensus       104 ~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~--------------------------------~~~~~~v  151 (496)
T 4fxs_A          104 PEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV--------------------------------TDLTKSV  151 (496)
T ss_dssp             SSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC--------------------------------CCTTSBG
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc--------------------------------ccCCCcH
Confidence            99999999999999999999999988999999999999732                                1225789


Q ss_pred             ccccc-c-CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          180 GDLMT-P-APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       180 ~~im~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                      .++|+ + +++++++++++.+++++|.+++.+.+||||++|+++|+||++|=
T Consensus       152 ~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DI  203 (496)
T 4fxs_A          152 AAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDF  203 (496)
T ss_dssp             GGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC--
T ss_pred             HHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHH
Confidence            99998 4 58899999999999999999999999999999999999999874

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.56  E-value=2e-14  Score=122.08  Aligned_cols=116  Identities=19%  Similarity=0.307  Sum_probs=95.4

Q ss_pred             ccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCc-----EEEEEehHhHhhhccccCCCCCCCCcccccccch
Q 026495           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK-----LVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (237)
Q Consensus        87 ~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~-----~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (237)
                      ++|.+  +++++++++++.++++.|.+++++++||+|+++.     ++|++|.+|+++++.....               
T Consensus       118 ~~~~~--~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~---------------  180 (323)
T 3t4n_C          118 GVDQL--DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCR---------------  180 (323)
T ss_dssp             TC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCG---------------
T ss_pred             CCCCC--CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCC---------------
Confidence            34456  7889999999999999999999999999998775     9999999999975321100               


Q ss_pred             hhHHHHHHHHHhhcCCccccc---cccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          162 KTFNEVQKLLSKTNGKMVGDL---MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~i---m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                               .......++.++   |.+++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|
T Consensus       181 ---------~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~d  241 (323)
T 3t4n_C          181 ---------ETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYD  241 (323)
T ss_dssp             ---------GGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTH
T ss_pred             ---------chhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHH
Confidence                     011234678999   8888999999999999999999999999999998899999999987

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.56  E-value=2.7e-14  Score=121.72  Aligned_cols=121  Identities=20%  Similarity=0.200  Sum_probs=96.4

Q ss_pred             cccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC-CCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhH
Q 026495           86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTF  164 (237)
Q Consensus        86 ~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (237)
                      +++|.+  +++++++++++.++++.|.+++.+.+||+|+ +|+++|+||.+|++++..........       .      
T Consensus       121 ~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~-------~------  185 (330)
T 2v8q_E          121 LQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPK-------P------  185 (330)
T ss_dssp             SSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSC-------C------
T ss_pred             hhcccC--CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCc-------h------
Confidence            466787  7999999999999999999999999999998 79999999999999754211100000       0      


Q ss_pred             HHHHHHHHhhcCCccccc--cc-cCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          165 NEVQKLLSKTNGKMVGDL--MT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       165 ~~~~~~~~~~~~~~v~~i--m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                              .....++.++  |. +++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|-
T Consensus       186 --------~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl  245 (330)
T 2v8q_E          186 --------EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV  245 (330)
T ss_dssp             --------GGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGT
T ss_pred             --------hhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHH
Confidence                    0012345554  54 678899999999999999999999999999988999999998873

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.55  E-value=2.4e-14  Score=128.88  Aligned_cols=111  Identities=26%  Similarity=0.409  Sum_probs=100.9

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEc--CCCcEEEEEehHhHhhhccccCCCCCCCCcccccccch
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd--~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (237)
                      .++++|.+  +++++++++++.++++.|.+++++.+||+|  ++++++|+||.+||+...                    
T Consensus        91 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~--------------------  148 (491)
T 1zfj_A           91 RSENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS--------------------  148 (491)
T ss_dssp             HHTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS--------------------
T ss_pred             hHHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc--------------------
Confidence            45789998  899999999999999999999999999999  789999999999998531                    


Q ss_pred             hhHHHHHHHHHhhcCCcccccccc-CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          162 KTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                  ..+.++.++|++ ++.++++++++.++++.|.+++.+.+||||++|+++|+||+.|
T Consensus       149 ------------~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~D  204 (491)
T 1zfj_A          149 ------------DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKD  204 (491)
T ss_dssp             ------------CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHH
T ss_pred             ------------cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHH
Confidence                        125789999987 8889999999999999999999999999999999999999876

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.51  E-value=5.5e-14  Score=119.96  Aligned_cols=138  Identities=21%  Similarity=0.237  Sum_probs=99.3

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      ...+++++|.++.+++++++++++.++++.|.+++++++||+|++ ++++|+|+.+|++.++............+.... 
T Consensus        20 ~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~-   98 (334)
T 2qrd_G           20 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEID-   98 (334)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGG-
T ss_pred             hcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHh-
Confidence            457999999886578899999999999999999999999999976 899999999999975321000000000000000 


Q ss_pred             chhhHHHHHHHHHhhcCCccccccccCc--eEEcCCCCHHHHHHHHHHcCCcEEEEEcCCC-c----EEEEEEccc
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVDADG-W----NYHKRKCSK  228 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~--~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~----~iGvIt~~d  228 (237)
                       ......+.+.        ++++|.+++  .++.+++++.++++.|.+++.+.+||+|++| +    ++|+||.+|
T Consensus        99 -~~~~~~i~~~--------l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~d  165 (334)
T 2qrd_G           99 -KFRLLGLREV--------ERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYR  165 (334)
T ss_dssp             -SCBHHHHHHH--------HHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHH
T ss_pred             -hhchhhHHHH--------HHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHH
Confidence             0001111111        123566666  8899999999999999999999999998765 4    999999887

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.50  E-value=1.4e-15  Score=137.03  Aligned_cols=111  Identities=30%  Similarity=0.448  Sum_probs=1.1

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (237)
                      +++++|.+  +++++++++++.++++.|.+++++.+||+|++++++|+||.+|+++.                       
T Consensus        96 ~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~-----------------------  150 (494)
T 1vrd_A           96 KTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFE-----------------------  150 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhh-----------------------
Confidence            46788998  89999999999999999999999999999988999999999999842                       


Q ss_pred             HHHHHHHHHhhcCCcccccccc--CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          164 FNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                               .....++.++|++  ++.++++++++.+++++|.+++++.+||||++|+++|+||+.|
T Consensus       151 ---------~~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~D  208 (494)
T 1vrd_A          151 ---------KNLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKD  208 (494)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             ---------cCCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHH
Confidence                     0124689999987  8999999999999999999999999999999999999999876

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.49  E-value=1.9e-15  Score=135.83  Aligned_cols=168  Identities=21%  Similarity=0.277  Sum_probs=25.3

Q ss_pred             CCCCCcchhhhhccCCEEEEec---CccchhHHHhccCCCceEEecCCceeeeehhhhcccCCCCCcccccccccccCce
Q 026495           19 PAGRTSGRTSFALQLPCLLLSR---PGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEEL   95 (237)
Q Consensus        19 ~~~~~~~~~ai~~~v~~li~~~---~~~~v~~~~~~~~~~v~v~~~sp~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~   95 (237)
                      ..........+...+|.+....   +...+...+ +...++.++..+-........+.       ...+++++|.+  ++
T Consensus        29 ~~~~t~lt~~i~l~iPivsa~M~tVTe~~lA~al-a~~GGiGvI~~~~~~e~~a~~v~-------~vk~~~~~m~~--~~   98 (490)
T 4avf_A           29 VSLKTRLTRGIELNIPLVSAAMDTVTEARLAIAM-AQEGGIGIIHKNMGIEQQAAEVR-------KVKKHETAIVR--DP   98 (490)
T ss_dssp             SCCCEEEETTEEESSSEEECSCTTTCSHHHHHHH-HHHTSEEEECCSSCHHHHHHHHH-------HHHHCCC--------
T ss_pred             eeeecccccCcccCCCccccchhhhCHHHHHHHH-HHcCCCccccCCCCHHHHHHHhh-------hhcccccCccc--Cc
Confidence            3344445567888899776532   122222233 22234444442111111111111       12356788988  89


Q ss_pred             eEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhc
Q 026495           96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN  175 (237)
Q Consensus        96 ~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (237)
                      +++++++++.+++++|.+++++.+||+| +++++|+||.+||...                                ...
T Consensus        99 v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~--------------------------------~~~  145 (490)
T 4avf_A           99 VTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVK--------------------------------PNA  145 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhc--------------------------------ccc
Confidence            9999999999999999999999999999 7999999999999632                                122


Q ss_pred             CCccccccc-c-CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          176 GKMVGDLMT-P-APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       176 ~~~v~~im~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                      ..++.++|+ + ++.++++++++.+++++|.+++.+.+||||++|+++|+||++|=
T Consensus       146 ~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Di  201 (490)
T 4avf_A          146 GDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDI  201 (490)
T ss_dssp             --------------------------------------------------------
T ss_pred             CCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHh
Confidence            468999998 4 68999999999999999999999999999999999999999873

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.48  E-value=2.8e-15  Score=135.26  Aligned_cols=112  Identities=26%  Similarity=0.261  Sum_probs=1.7

Q ss_pred             cccc-ccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC---CcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           85 VGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        85 v~~i-m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      ..++ |.+  +++++++++++.+++++|.+++++.+||+|++   ++++|+||.+|+++.                    
T Consensus        98 ~~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--------------------  155 (503)
T 1me8_A           98 NFKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--------------------  155 (503)
T ss_dssp             TTTC----------------------------------------------------------------------------
T ss_pred             hcccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--------------------
Confidence            3345 888  89999999999999999999999999999987   899999999999842                    


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccC--ceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                                 ......++.++|+++  ++++++++++.+++++|.+++++.+||+|++|+++|+||.+|=
T Consensus       156 -----------~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Di  215 (503)
T 1me8_A          156 -----------LTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDY  215 (503)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             -----------hccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHH
Confidence                       011246899999887  8999999999999999999999999999999999999999873

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.45  E-value=6.7e-15  Score=130.75  Aligned_cols=159  Identities=23%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             hhhhccCCEEEEecCccchh-HHH---hccCCCceEEecCCceeeeehhhhcccCCCCCcccccccccccCceeEEcCCC
Q 026495           27 TSFALQLPCLLLSRPGCRVF-SVL---ATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT  102 (237)
Q Consensus        27 ~ai~~~v~~li~~~~~~~v~-~~~---~~~~~~v~v~~~sp~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~  102 (237)
                      ..+..++|++...  -..+. .+|   .+..-++.++..+--..........       -.+-+..|..  +++++.++.
T Consensus        87 ~~i~L~iPlvSA~--MDTVTe~~MAIamAr~GGiGvIH~n~sie~Qa~~V~~-------VKr~e~g~i~--dPvtl~P~~  155 (556)
T 4af0_A           87 KNIVLNTPFLSSP--MDTVTEDRMAIALALHGGLGIIHHNCSAEEQAAMVRR-------VKKYENGFIT--DPLCLGPDA  155 (556)
T ss_dssp             TTEEESSCEEECC--CTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHH-------HHHCCC---------------
T ss_pred             CCcEeCCCEEecC--cccccCHHHHHHHHHCCCeEEEcCCCCHHHHHHHHHH-------HHhcccCccC--CCeEcCCCC
Confidence            5677778877543  22222 222   4555667776633111000111110       0011234555  689999999


Q ss_pred             CHHHHHHHHHHCCCCeEEEEcC---CCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhcCCcc
Q 026495          103 TVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMV  179 (237)
Q Consensus       103 ~l~~~~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  179 (237)
                      |+.|++++|.+++++.+||+|+   +++++||||.+|+..                                 ...+.+|
T Consensus       156 Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf---------------------------------~d~~~~V  202 (556)
T 4af0_A          156 TVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF---------------------------------QDAETPI  202 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccc---------------------------------cccceEh
Confidence            9999999999999999999986   579999999999863                                 1225789


Q ss_pred             ccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495          180 GDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG  229 (237)
Q Consensus       180 ~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~  229 (237)
                      +++|++++.++++..++++|.++|.++++..+||||++++++|+||++|=
T Consensus       203 ~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi  252 (556)
T 4af0_A          203 KSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDL  252 (556)
T ss_dssp             --------------------------------------------------
T ss_pred             hhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechh
Confidence            99999999999999999999999999999999999999999999999884

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.42  E-value=7.3e-15  Score=132.99  Aligned_cols=113  Identities=26%  Similarity=0.380  Sum_probs=66.4

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC---CCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      +++++|.+  +++++.+++++.+++++|.+++++.+||+|+   +++++|+||.+|+.+...                  
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~------------------  168 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE------------------  168 (514)
T ss_dssp             TCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC----------------------
T ss_pred             hhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh------------------
Confidence            56788987  7889999999999999999999999999997   589999999999975210                  


Q ss_pred             hhhHHHHHHHHHhhcCCcccccccc--CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                  .....++.++|++  +++++++++++.+++++|.+++.+.+||||++|+++|+||++|
T Consensus       169 ------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~D  226 (514)
T 1jcn_A          169 ------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTD  226 (514)
T ss_dssp             ------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCC
T ss_pred             ------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHH
Confidence                        0124679999988  8999999999999999999999999999999999999999876

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.33  E-value=1.1e-13  Score=124.35  Aligned_cols=107  Identities=33%  Similarity=0.547  Sum_probs=0.9

Q ss_pred             ccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhH
Q 026495           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTF  164 (237)
Q Consensus        85 v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (237)
                      ..+.|..  +++++++++++.++++.|.+++++.+||+|+ ++++|+|+.+||+.                         
T Consensus        95 ~~~~m~~--~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~-------------------------  146 (486)
T 2cu0_A           95 AERLIVE--DVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA-------------------------  146 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhcccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc-------------------------
Confidence            3557887  8999999999999999999999999999997 99999999999973                         


Q ss_pred             HHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          165 NEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       165 ~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                               ....++.++|.+++.++++++++.++++.|.+++.+.+||||++|+++|+||++|
T Consensus       147 ---------~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~D  201 (486)
T 2cu0_A          147 ---------REGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSD  201 (486)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             ---------CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHH
Confidence                     0146789999888899999999999999999999999999998899999999876

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.32  E-value=1.3e-11  Score=99.13  Aligned_cols=160  Identities=13%  Similarity=0.070  Sum_probs=85.1

Q ss_pred             CCCCCcchhhhhccCCEEEEecCccchhHHH-hccCCCceEEecCC-ce-eeeehhhhcccCCCCCcccccccccccCce
Q 026495           19 PAGRTSGRTSFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSS-AV-FASGTLTANSAAPSSGVYTVGDFMTTKEEL   95 (237)
Q Consensus        19 ~~~~~~~~~ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp-~~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~   95 (237)
                      .+|.......+...+.++-...+..++.+.+ ......+++..+.. .. ......+..    .....+++++|.+  ++
T Consensus         9 ~~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~----~~~~~~v~~im~~--~~   82 (213)
T 1vr9_A            9 HHHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLD----LDLDSSVFNKVSL--PD   82 (213)
T ss_dssp             ----CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTT----SCTTSBSGGGCBC--TT
T ss_pred             cccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHh----hcCCCcHHHHccC--CC
Confidence            3566667677777887776555455556666 55666788886332 22 333322222    1235689999998  79


Q ss_pred             eEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhc
Q 026495           96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN  175 (237)
Q Consensus        96 ~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (237)
                      +++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++.....                               
T Consensus        83 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~-------------------------------  131 (213)
T 1vr9_A           83 FFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA-------------------------------  131 (213)
T ss_dssp             CCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS-------------------------------
T ss_pred             EEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH-------------------------------
Confidence            9999999999999999999999999999889999999999999743210                               


Q ss_pred             CCccccccccC-ceEEcCCCCHHHHHHHHHHcCCcEEEEEcC
Q 026495          176 GKMVGDLMTPA-PVVVRETTNLEDAARLLLETKYRRLPVVDA  216 (237)
Q Consensus       176 ~~~v~~im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  216 (237)
                       ....+.+.+- +.+.....++.++.+.|.+++.+.++|++.
T Consensus       132 -~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~  172 (213)
T 1vr9_A          132 -LAMDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITT  172 (213)
T ss_dssp             -CC---------------------------------------
T ss_pred             -hcCCCCcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEE
Confidence             1112222211 111123345889999999999988888754

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.21  E-value=4e-11  Score=79.18  Aligned_cols=69  Identities=28%  Similarity=0.426  Sum_probs=55.7

Q ss_pred             eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhh
Q 026495           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT  174 (237)
Q Consensus        95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (237)
                      ++++.+++++.+|+++|.+++++++||+| +|+++|++|.+||++.....+.                          ..
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~--------------------------~~   54 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGK--------------------------NP   54 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTC--------------------------CG
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCC--------------------------Cc
Confidence            67899999999999999999999999998 5899999999999864322211                          11


Q ss_pred             cCCccccccccCceEE
Q 026495          175 NGKMVGDLMTPAPVVV  190 (237)
Q Consensus       175 ~~~~v~~im~~~~~~v  190 (237)
                      .+.+++++|++++.++
T Consensus        55 ~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A           55 KEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             GGCBGGGTCEECTTCC
T ss_pred             ccCCHHHhcCCCCeEC
Confidence            2468999999887653

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.16  E-value=2.6e-11  Score=99.13  Aligned_cols=106  Identities=20%  Similarity=0.360  Sum_probs=82.6

Q ss_pred             cchhhhhccCCEEEEecCccchhHHH--hccCCCceEEecCCce-eeeehhhhcccCCCCCccccccccc-ccCceeEEc
Q 026495           24 SGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVK   99 (237)
Q Consensus        24 ~~~~ai~~~v~~li~~~~~~~v~~~~--~~~~~~v~v~~~sp~~-~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~   99 (237)
                      ..+.+++.+++++++++ +..+.+.+  .....+++++. ++++ +...+.+.       ...+++++|+ +  ++.+++
T Consensus       132 ~~~~~i~~~~~~liit~-~~~~~~~v~~~a~~~~~~~i~-t~~d~~~~~~~~~-------~~~~v~~im~~~--~~~~~~  200 (245)
T 3l2b_A          132 IQAELIELKVSLLIVTG-GHTPSKEIIELAKKNNITVIT-TPHDSFTASRLIV-------QSLPVDYVMTKD--NLVAVS  200 (245)
T ss_dssp             HHHHHHHTTCSEEEECT-TCCCCHHHHHHHHHHTCEEEE-CSSCHHHHHHHGG-------GGSBHHHHSBCT--TCCCEE
T ss_pred             HHHHHHHcCCCEEEECC-CCCCCHHHHHHHHHcCCeEEE-eCCChHHHHHHHh-------cCCceeeEecCC--ccEEEC
Confidence            34677899999999997 66665555  45566788888 7777 54444333       3457999999 5  799999


Q ss_pred             CCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       100 ~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +++++.++++.|.+++++++||+|++|+++|+||.+|+++.
T Consensus       201 ~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~  241 (245)
T 3l2b_A          201 TDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIST  241 (245)
T ss_dssp             TTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-----
T ss_pred             CCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhch
Confidence            99999999999999999999999988999999999999864

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.03  E-value=1.7e-09  Score=79.14  Aligned_cols=105  Identities=18%  Similarity=0.182  Sum_probs=75.2

Q ss_pred             CCEEEEecCccchhHHH-hccCCCceEEecC--Cce-eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHH
Q 026495           33 LPCLLLSRPGCRVFSVL-ATSSDRVSALRRS--SAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL  108 (237)
Q Consensus        33 v~~li~~~~~~~v~~~~-~~~~~~v~v~~~s--p~~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~  108 (237)
                      +.++-...+..++.+.+ ......+|+..+.  ... ......+...........+++++|.+   +.++++++++.+++
T Consensus        15 ~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m~~---~~~v~~~~~l~~a~   91 (127)
T 3nqr_A           15 MITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRT---AVVVPESKRVDRML   91 (127)
T ss_dssp             CCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHCBC---CCEEETTCBHHHHH
T ss_pred             eEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHcCC---CeEECCCCcHHHHH
Confidence            44444334344444555 5566678888753  222 33333333322234457789999965   67899999999999


Q ss_pred             HHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       109 ~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +.|.+++.+.+||+|++|+++|+||.+|+++.
T Consensus        92 ~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~  123 (127)
T 3nqr_A           92 KEFRSQRYHMAIVIDEFGGVSGLVTIEDILEL  123 (127)
T ss_dssp             HHHHHTTCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             HHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence            99999999999999988999999999999974

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.00  E-value=1.2e-09  Score=80.03  Aligned_cols=112  Identities=13%  Similarity=0.144  Sum_probs=80.7

Q ss_pred             hhhhccCCEEEEecCccchhHHH-hccCCCceEEecCCce-eeeehhhhcccCCCC-CcccccccccccCceeEEcCCCC
Q 026495           27 TSFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV-FASGTLTANSAAPSS-GVYTVGDFMTTKEELHVVKPTTT  103 (237)
Q Consensus        27 ~ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~-~~~~~~~~~~~~~~~-~~~~v~~im~~~~~~~~v~~~~~  103 (237)
                      ..+...++.+-...+..++.+.+ ......+++..+.... ......+........ ...+++++|.+  ++.+++++++
T Consensus         9 ~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~   86 (128)
T 3gby_A            9 YLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKGWPTVKEKLGEELLE--TVRSYRPGEQ   86 (128)
T ss_dssp             GGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCB--CCCCBCTTSB
T ss_pred             HhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHhhCCcccCcHHHHccC--CCcEECCCCC
Confidence            45566666665555555556666 5566778888752222 333333332222222 22679999998  7899999999


Q ss_pred             HHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       104 l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +.++++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus        87 l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~  123 (128)
T 3gby_A           87 LFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGF  123 (128)
T ss_dssp             GGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             HHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHH
Confidence            9999999999999999999988999999999999975

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.98  E-value=3.1e-09  Score=78.79  Aligned_cols=105  Identities=12%  Similarity=0.094  Sum_probs=74.5

Q ss_pred             CCEEEEecCccchhHHH-hccCCCceEEecC--Cce-eeeehhhhcccC-CCCCcccccccccccCceeEEcCCCCHHHH
Q 026495           33 LPCLLLSRPGCRVFSVL-ATSSDRVSALRRS--SAV-FASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (237)
Q Consensus        33 v~~li~~~~~~~v~~~~-~~~~~~v~v~~~s--p~~-~~~~~~~~~~~~-~~~~~~~v~~im~~~~~~~~v~~~~~l~~~  107 (237)
                      +.++-...+...+.+.+ ......+|+..+.  ... ....+.+..... ......+++++|++   +.++++++++.++
T Consensus        15 ~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m~~---~~~v~~~~~l~~~   91 (136)
T 3lfr_A           15 MISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLLRP---ATFVPESKRLNVL   91 (136)
T ss_dssp             CCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTCBC---CCEEETTCBHHHH
T ss_pred             EEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHcCC---CeEECCCCcHHHH
Confidence            34443333344444555 5566677887643  222 333333332211 23456789999976   7899999999999


Q ss_pred             HHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       108 ~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +..|.+++.+.+||+|++|+++|+||.+|+++.
T Consensus        92 ~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~  124 (136)
T 3lfr_A           92 LREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQ  124 (136)
T ss_dssp             HHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTT
T ss_pred             HHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence            999999999999999988999999999999975

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.97  E-value=3.7e-09  Score=77.58  Aligned_cols=104  Identities=14%  Similarity=0.157  Sum_probs=72.5

Q ss_pred             cCCEEEEecCccchhHHH-hccCCCceEEecC--Cce-eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHH
Q 026495           32 QLPCLLLSRPGCRVFSVL-ATSSDRVSALRRS--SAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (237)
Q Consensus        32 ~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~s--p~~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~  107 (237)
                      .+.++-...+..++.+.+ ......+|+..+.  ... ....+.+.....  ....+++++|.+   +.++++++++.++
T Consensus        16 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~--~~~~~v~~~m~~---~~~v~~~~~l~~~   90 (129)
T 3jtf_A           16 RMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML--EPALDIRSLVRP---AVFIPEVKRLNVL   90 (129)
T ss_dssp             GCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT--CTTSCGGGGCBC---CCEEETTCBHHHH
T ss_pred             HeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc--cCCcCHHHHhCC---CeEeCCCCcHHHH
Confidence            334443333344445555 5556677887642  222 333333332211  246689999975   7899999999999


Q ss_pred             HHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       108 ~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ++.|.+++.+.+||+|++|+++|+||.+|+++.
T Consensus        91 ~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~  123 (129)
T 3jtf_A           91 LREFRASRNHLAIVIDEHGGISGLVTMEDVLEQ  123 (129)
T ss_dssp             HHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHH
T ss_pred             HHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence            999999999999999988999999999999974

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.95  E-value=4.2e-09  Score=81.08  Aligned_cols=57  Identities=28%  Similarity=0.367  Sum_probs=53.1

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ..+++++|++  ++.++++++++.+|+++|.+++++++||+| +|+++|+||..||++++
T Consensus       104 ~~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l  160 (170)
T 4esy_A          104 KLTASAVMTQ--PVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLL  160 (170)
T ss_dssp             TCBHHHHCBC--CSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTS
T ss_pred             ccchhhhccc--CcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            5689999998  899999999999999999999999999998 59999999999999854

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.91  E-value=3.1e-09  Score=76.88  Aligned_cols=108  Identities=19%  Similarity=0.205  Sum_probs=74.5

Q ss_pred             hccCCEEEEecCccchhHHH-hccCCCceEEecCCc-e-eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHH
Q 026495           30 ALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSA-V-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (237)
Q Consensus        30 ~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~-~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~  106 (237)
                      ...+.++....+..++.+.+ ......+++..+... . ......+......  ...+++++|.+  ++.++++++++.+
T Consensus         8 ~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~--~~~~v~~~~~~--~~~~v~~~~~l~~   83 (122)
T 3kpb_A            8 SKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ--NKKTIEEIMTR--NVITAHEDEPVDH   83 (122)
T ss_dssp             CSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT--TCCBGGGTSBS--SCCCEETTSBHHH
T ss_pred             CCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh--cccCHHHHhcC--CCeEECCCCCHHH
Confidence            33444444333344455555 555667788763322 2 3233222221111  23389999988  7899999999999


Q ss_pred             HHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       107 ~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      +++.|.+++.+.+||+|++|+++|+||..|+++++
T Consensus        84 ~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           84 VAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLF  118 (122)
T ss_dssp             HHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHh
Confidence            99999999999999999889999999999999753

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.91  E-value=3.3e-09  Score=77.88  Aligned_cols=94  Identities=18%  Similarity=0.239  Sum_probs=68.8

Q ss_pred             chhHHH-hccCCCceEEecC--Cce-eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeE
Q 026495           44 RVFSVL-ATSSDRVSALRRS--SAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGF  119 (237)
Q Consensus        44 ~v~~~~-~~~~~~v~v~~~s--p~~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~  119 (237)
                      ++.+.+ ......+|+..+.  ... ......+...........+++++|.+   +.++++++++.++++.|.+++.+.+
T Consensus        29 ~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~  105 (130)
T 3i8n_A           29 EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVMRP---IQVVLNNTALPKVFDQMMTHRLQLA  105 (130)
T ss_dssp             HHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHSEE---CCEEETTSCHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHhcC---CcCcCCCCcHHHHHHHHHHcCCeEE
Confidence            334444 4556678888743  222 33333333222223346789999954   7899999999999999999999999


Q ss_pred             EEEcCCCcEEEEEehHhHhhh
Q 026495          120 PVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       120 pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ||+|++|+++|+||..|+++.
T Consensus       106 ~Vvd~~g~~vGivt~~dil~~  126 (130)
T 3i8n_A          106 LVVDEYGTVLGLVTLEDIFEH  126 (130)
T ss_dssp             EEECTTSCEEEEEEHHHHHHH
T ss_pred             EEEcCCCCEEEEEEHHHHHHH
Confidence            999988999999999999974

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.89  E-value=6.6e-09  Score=76.30  Aligned_cols=111  Identities=17%  Similarity=0.199  Sum_probs=76.9

Q ss_pred             hhhccCCEEEEecCccchhHHH-hccCCCceEEecCCc-eeeeehhhhcc-cCCCCCcccccccccccCceeEEcCCCCH
Q 026495           28 SFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSA-VFASGTLTANS-AAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (237)
Q Consensus        28 ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~-~~~~~~~~~~~-~~~~~~~~~v~~im~~~~~~~~v~~~~~l  104 (237)
                      .+...+.++....+..++.+.+ ......+++..+... .......+... ........+++++|.+  ++.++++++++
T Consensus         9 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l   86 (133)
T 2ef7_A            9 YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEEFMTA--SLITIREDSPI   86 (133)
T ss_dssp             TSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE--CCCCEETTSBH
T ss_pred             hccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHHHHHhcCCCcccCHHHHcCC--CCEEECCCCCH
Confidence            3444455554444444555555 556667788763222 23233322211 1122235789999988  78999999999


Q ss_pred             HHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       105 ~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      .++++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus        87 ~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~  122 (133)
T 2ef7_A           87 TGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRA  122 (133)
T ss_dssp             HHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHH
Confidence            999999999999999999988999999999999974

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.88  E-value=7.1e-09  Score=80.04  Aligned_cols=107  Identities=18%  Similarity=0.138  Sum_probs=76.0

Q ss_pred             ccCCEEEEecCccchhHHH-hccCCCceEEecC--Cce-eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHH
Q 026495           31 LQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRS--SAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (237)
Q Consensus        31 ~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~s--p~~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~  106 (237)
                      ..+.++-...+...+.+.+ ......+|+..+.  ... ....+.+..... .....+++++| +  +++++++++++.+
T Consensus        52 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~-~~~~~~v~~im-~--~~~~v~~~~~l~~  127 (172)
T 3lhh_A           52 SDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI-AGERLELVDLV-K--NCNFVPNSLSGME  127 (172)
T ss_dssp             GGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH-TTCCCCGGGGC-B--CCEEEETTCCHHH
T ss_pred             HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh-hcCcccHHHHh-c--CCeEeCCCCCHHH
Confidence            3444444444444555555 5566778888753  222 333333332211 12367899999 5  6899999999999


Q ss_pred             HHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       107 ~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      +++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus       128 a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l  162 (172)
T 3lhh_A          128 LLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDAL  162 (172)
T ss_dssp             HHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             HHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHH
Confidence            99999999999999999889999999999999753

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.88  E-value=1e-08  Score=76.14  Aligned_cols=111  Identities=16%  Similarity=0.049  Sum_probs=76.2

Q ss_pred             hhhhccCCEEEEecCccchhHHH-hccCCCceEEecCC---ce-eeeehhhhccc-CCCCCcccccccccccCceeEEcC
Q 026495           27 TSFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSS---AV-FASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKP  100 (237)
Q Consensus        27 ~ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp---~~-~~~~~~~~~~~-~~~~~~~~v~~im~~~~~~~~v~~  100 (237)
                      ..+...+.++....+..++.+.+ ......+++..+..   .. ......+.... .......+++++|.+  ++.++++
T Consensus         9 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~--~~~~v~~   86 (141)
T 2rih_A            9 ELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANS--PITVLDT   86 (141)
T ss_dssp             GGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBC--CCEEETT
T ss_pred             HHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCC--CCeEEcC
Confidence            33444444444333344445555 55566788887442   22 22322222111 112236789999988  7999999


Q ss_pred             CCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       101 ~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      + ++.++++.|.+++.+.+||+|++|+++|+||.+||++.
T Consensus        87 ~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~  125 (141)
T 2rih_A           87 D-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  125 (141)
T ss_dssp             S-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             C-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHH
Confidence            9 99999999999999999999988999999999999864

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.88  E-value=8.9e-09  Score=78.16  Aligned_cols=103  Identities=15%  Similarity=0.124  Sum_probs=74.5

Q ss_pred             cCCEEEEecCccchhHHH-hccCCCceEEecCC--ce-eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHH
Q 026495           32 QLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSS--AV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (237)
Q Consensus        32 ~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp--~~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~  107 (237)
                      .+.++....+...+.+.+ ......+|+..+..  .. ....+.+....... ...+++++|++   +.++++++++.++
T Consensus        49 ~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-~~~~v~~im~~---~~~v~~~~~l~~a  124 (156)
T 3oi8_A           49 RMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-EQFHLKSILRP---AVFVPEGKSLTAL  124 (156)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG-GGCCHHHHCBC---CCEEETTSBHHHH
T ss_pred             HeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC-CcccHHHHcCC---CEEECCCCCHHHH
Confidence            344444444444555555 56677888887532  22 33333333322122 56789999976   7899999999999


Q ss_pred             HHHHHHCCCCeEEEEcCCCcEEEEEehHhHh
Q 026495          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (237)
Q Consensus       108 ~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~  138 (237)
                      ++.|.+++.+.+||+|++|+++|+||..|++
T Consensus       125 ~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          125 LKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             HHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             HHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            9999999999999999889999999999986

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.88  E-value=4.6e-09  Score=78.84  Aligned_cols=105  Identities=17%  Similarity=0.266  Sum_probs=74.9

Q ss_pred             cCCEEEEecCccchhHHH-hccCCCceEEecC--Cce-eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHH
Q 026495           32 QLPCLLLSRPGCRVFSVL-ATSSDRVSALRRS--SAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (237)
Q Consensus        32 ~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~s--p~~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~  107 (237)
                      .+.++-...+...+.+.+ ......+|+..+.  ... ......+...... ....+++++| +  ++.++++++++.++
T Consensus        34 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~-~~~~~v~~~m-~--~~~~v~~~~~l~~~  109 (148)
T 3lv9_A           34 DMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKIN-ENKIELEEIL-R--DIIYISENLTIDKA  109 (148)
T ss_dssp             TCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHH-HSCCCGGGTC-B--CCEEEETTSBHHHH
T ss_pred             HeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-CCCccHHHhc-C--CCeEECCCCCHHHH
Confidence            455554444445555555 5667788888753  222 3333333221101 1166899999 5  68999999999999


Q ss_pred             HHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       108 ~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus       110 ~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~  142 (148)
T 3lv9_A          110 LERIRKEKLQLAIVVDEYGGTSGVVTIEDILEE  142 (148)
T ss_dssp             HHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHH
T ss_pred             HHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence            999999999999999988999999999999974

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.86  E-value=1.4e-08  Score=79.05  Aligned_cols=113  Identities=13%  Similarity=0.113  Sum_probs=81.5

Q ss_pred             hhhhhccCCEEEEecCccchhHHH-hccCCCceEEecC-Cc-eeeeehhhhccc---CCCCCcccccccccccCceeEEc
Q 026495           26 RTSFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRS-SA-VFASGTLTANSA---APSSGVYTVGDFMTTKEELHVVK   99 (237)
Q Consensus        26 ~~ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~s-p~-~~~~~~~~~~~~---~~~~~~~~v~~im~~~~~~~~v~   99 (237)
                      ...+...+..+....+..++.+.+ ......+++..+. .. .......+....   .......+++++|.+  +++++.
T Consensus        12 ~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~   89 (184)
T 1pvm_A           12 EKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVK   89 (184)
T ss_dssp             GGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEE
T ss_pred             HHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCC--CCcEEC
Confidence            345555666665554455555556 5666778888632 22 233333332211   123456789999998  789999


Q ss_pred             CCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       100 ~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +++++.++++.|.+++.+.+||+|++|+++|+||..||+++
T Consensus        90 ~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~  130 (184)
T 1pvm_A           90 SDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY  130 (184)
T ss_dssp             TTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTT
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence            99999999999999999999999988999999999999975

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.86  E-value=6.2e-09  Score=76.59  Aligned_cols=106  Identities=15%  Similarity=0.057  Sum_probs=73.3

Q ss_pred             cCCEEEEecCccchhHHH-hccCCCceEEecCC--c-eeeeehhhhcccCC--CCCcccccccccccCceeEEcCCCCHH
Q 026495           32 QLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSS--A-VFASGTLTANSAAP--SSGVYTVGDFMTTKEELHVVKPTTTVD  105 (237)
Q Consensus        32 ~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp--~-~~~~~~~~~~~~~~--~~~~~~v~~im~~~~~~~~v~~~~~l~  105 (237)
                      .+.++-...+..++.+.+ ......+|+..+..  . .....+.+......  .....+++++|.   ++.++++++++.
T Consensus        13 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m~---~~~~v~~~~~l~   89 (130)
T 3hf7_A           13 EIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAAD---EIYFVPEGTPLS   89 (130)
T ss_dssp             GCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHSB---CCCEEETTCBHH
T ss_pred             HEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhcc---CCeEeCCCCcHH
Confidence            344444344344444555 55566778875321  2 23333333322121  234567899995   488999999999


Q ss_pred             HHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       106 ~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ++++.|.+++.+.+||+|++|+++|+||.+|+++.
T Consensus        90 ~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~  124 (130)
T 3hf7_A           90 TQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEE  124 (130)
T ss_dssp             HHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             HHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHH
Confidence            99999999999999999988999999999999974

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.85  E-value=1.9e-08  Score=80.07  Aligned_cols=111  Identities=16%  Similarity=0.110  Sum_probs=75.4

Q ss_pred             hhhhccCCEEEEecCccchhHHHhc----cCCCceEEecCCceeeeehhhhcccCCCCCcccccccccccCceeEEcCCC
Q 026495           27 TSFALQLPCLLLSRPGCRVFSVLAT----SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT  102 (237)
Q Consensus        27 ~ai~~~v~~li~~~~~~~v~~~~~~----~~~~v~v~~~sp~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~  102 (237)
                      ..+...+.++-...+...+.+.+..    ....+++..+...-.+......+  .......+++++|.+  ++.++++++
T Consensus        58 ~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dl--l~~~~~~~v~~im~~--~~~~v~~~~  133 (205)
T 3kxr_A           58 RYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDI--FKHEPHEPLISLLSE--DSRALTANT  133 (205)
T ss_dssp             GGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHH--TTSCTTSBGGGGCCS--SCCCEETTS
T ss_pred             hhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHH--HhCCCcchHHHHhcC--CCeEECCCC
Confidence            4455556555544434444444422    33455666532211222222222  122346689999988  799999999


Q ss_pred             CHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       103 ~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ++.++++.|.+++.+.+||+|++|+++|+||..|++..+
T Consensus       134 ~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i  172 (205)
T 3kxr_A          134 TLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALV  172 (205)
T ss_dssp             CHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            999999999999999999999999999999999999753

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.82  E-value=1.2e-08  Score=76.40  Aligned_cols=60  Identities=33%  Similarity=0.529  Sum_probs=54.2

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ....+++++|.+  +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++.+
T Consensus        82 ~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~  141 (152)
T 4gqw_A           82 TNGKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAA  141 (152)
T ss_dssp             --CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             hccccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence            345689999998  788999999999999999999999999999889999999999999753

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.79  E-value=1.3e-08  Score=73.79  Aligned_cols=110  Identities=15%  Similarity=0.209  Sum_probs=75.1

Q ss_pred             hhccCCEEEEecCccchhHHH-hccCCCceEEecCCce-eeeehhhhc--ccCCCCCcccccccccccCceeEEcCCCCH
Q 026495           29 FALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV-FASGTLTAN--SAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (237)
Q Consensus        29 i~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~-~~~~~~~~~--~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  104 (237)
                      +...+..+....+..++.+.+ ......+++..+.... ......+..  .........+++++|.+  ++.++++++++
T Consensus         7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l   84 (125)
T 1pbj_A            7 MVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMER--DLVTISPRATI   84 (125)
T ss_dssp             CBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBC--GGGEECTTSCH
T ss_pred             cCCCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHHhcCCcccccCHHHHcCC--CCeEECCCCCH
Confidence            334444444333344444455 4556667777622222 222222221  11223356789999998  79999999999


Q ss_pred             HHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       105 ~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      .++++.|.+++.+.+||+|+ |+++|+||.+|+++.+
T Consensus        85 ~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l  120 (125)
T 1pbj_A           85 KEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAK  120 (125)
T ss_dssp             HHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            99999999999999999997 9999999999999753

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.78  E-value=5.5e-09  Score=79.62  Aligned_cols=105  Identities=18%  Similarity=0.217  Sum_probs=72.3

Q ss_pred             cCCEEEEecCccchhHHH-hccCCCceEEecCCce--eeeehhhhcc------cCCCCCcccccccccccCceeEEcCCC
Q 026495           32 QLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV--FASGTLTANS------AAPSSGVYTVGDFMTTKEELHVVKPTT  102 (237)
Q Consensus        32 ~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~--~~~~~~~~~~------~~~~~~~~~v~~im~~~~~~~~v~~~~  102 (237)
                      .+.++..+.+..++.+.+ ....+++|+..+...-  ....+.+...      ........+++++|.+  ++.++++++
T Consensus        26 ~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~  103 (156)
T 3k6e_A           26 NLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKT--DVAVVSPDF  103 (156)
T ss_dssp             SSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBC--SCCCBCTTC
T ss_pred             HeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhcC--Cceeccccc
Confidence            344444444444555555 6677788888643211  2222222110      0112346789999998  899999999


Q ss_pred             CHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       103 ~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ++.++++.|.+++  .+||+|++|+++|+||.+|+++.
T Consensus       104 ~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~  139 (156)
T 3k6e_A          104 TITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKA  139 (156)
T ss_dssp             CHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHH
Confidence            9999999998765  59999999999999999999975

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.77  E-value=1.7e-08  Score=74.49  Aligned_cols=111  Identities=19%  Similarity=0.230  Sum_probs=76.7

Q ss_pred             hhhccCCEEEEecCccchhHHH-hccCCCceEEecCC--ceeeeehhh-hccc-CCCCCcccccccccccCceeEEcCCC
Q 026495           28 SFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSS--AVFASGTLT-ANSA-APSSGVYTVGDFMTTKEELHVVKPTT  102 (237)
Q Consensus        28 ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp--~~~~~~~~~-~~~~-~~~~~~~~v~~im~~~~~~~~v~~~~  102 (237)
                      .+...+.++....+..++.+.+ ......+++..+..  ........+ .... .......+++++|.+  ++.++++++
T Consensus        13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~   90 (138)
T 2p9m_A           13 VMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTK--DVITIHEDA   90 (138)
T ss_dssp             TSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSCS--SCCCEETTS
T ss_pred             hhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcccCCcCHHHHhCC--CcEEECCCC
Confidence            3444555554444344455555 55566778886332  223333333 2111 123456789999998  789999999


Q ss_pred             CHHHHHHHHHHCC-----CCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          103 TVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       103 ~l~~~~~~~~~~~-----~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ++.++++.|.+++     .+.+||+|++|+++|+||..|+++.
T Consensus        91 ~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~  133 (138)
T 2p9m_A           91 SILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRT  133 (138)
T ss_dssp             BHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             CHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHH
Confidence            9999999999999     9999999988999999999999864

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.76  E-value=1.3e-08  Score=76.95  Aligned_cols=106  Identities=13%  Similarity=0.131  Sum_probs=73.3

Q ss_pred             cCCEEEEecCccchhHHH-hccCCCceEE-ecC---CceeeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHH
Q 026495           32 QLPCLLLSRPGCRVFSVL-ATSSDRVSAL-RRS---SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (237)
Q Consensus        32 ~v~~li~~~~~~~v~~~~-~~~~~~v~v~-~~s---p~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~  106 (237)
                      .+.++-...+...+.+.+ ......+|+. .+.   .........+..... .....+++++| +  ++.++++++++.+
T Consensus        31 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~-~~~~~~v~~~m-~--~~~~v~~~~~l~~  106 (153)
T 3oco_A           31 SMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR-IDDKAKISTIM-R--DIVSVPENMKVPD  106 (153)
T ss_dssp             GCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH-HHTTSBGGGTC-B--CCEEEETTSBHHH
T ss_pred             heEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh-cCCCCcHHHHh-C--CCeEECCCCCHHH
Confidence            344444334344445555 5666778888 321   122323332221111 11266899999 5  6999999999999


Q ss_pred             HHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       107 ~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ++..|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus       107 ~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l  141 (153)
T 3oco_A          107 VMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEEL  141 (153)
T ss_dssp             HHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHH
T ss_pred             HHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHH
Confidence            99999999999999999889999999999999753

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.75  E-value=2.1e-08  Score=75.82  Aligned_cols=106  Identities=21%  Similarity=0.292  Sum_probs=74.8

Q ss_pred             CCEEEEecCccchhHHH-hccCCCceEEecCCce-eeeehhhhccc---CCCCCcccccccccccCceeEEcCCCCHHHH
Q 026495           33 LPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV-FASGTLTANSA---APSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (237)
Q Consensus        33 v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~-~~~~~~~~~~~---~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~  107 (237)
                      +.++....+..++.+.+ ......+++..+.... ......+....   .......+++++|.+  ++.++++++++.++
T Consensus        23 ~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~  100 (157)
T 4fry_A           23 IYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTA--KVRYVEPSQSTDEC  100 (157)
T ss_dssp             CCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBS--SCCCBCTTSBHHHH
T ss_pred             CeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCC--CCcEECCCCcHHHH
Confidence            44554444444555555 4555667775433222 33333332211   122357799999998  79999999999999


Q ss_pred             HHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       108 ~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ++.|.+++.+.+||+| +|+++|+||..||++.+
T Consensus       101 ~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l  133 (157)
T 4fry_A          101 MALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSV  133 (157)
T ss_dssp             HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            9999999999999999 79999999999999754

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.75  E-value=2.4e-08  Score=73.52  Aligned_cols=107  Identities=19%  Similarity=0.227  Sum_probs=74.5

Q ss_pred             ccCCEEEEecCccchhHHH-hccCCCceEEecCCce-eeeehhhhc-ccC--CCCCcccccccccccCceeEEcCCCCHH
Q 026495           31 LQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV-FASGTLTAN-SAA--PSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (237)
Q Consensus        31 ~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~-~~~~~~~~~-~~~--~~~~~~~v~~im~~~~~~~~v~~~~~l~  105 (237)
                      ..+.++....+..++.+.+ ......+++..+.... ......+.. ...  ......+++++|.+  ++.++++++++.
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~   94 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNE   94 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHH
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccC--CCeEECCCCcHH
Confidence            4455544333344445555 4556677877532222 323232221 111  12457799999998  799999999999


Q ss_pred             HHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       106 ~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ++++.|.+++.+.+||+| +|+++|+||.+|+++.
T Consensus        95 ~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~  128 (135)
T 2rc3_A           95 DCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKD  128 (135)
T ss_dssp             HHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHH
Confidence            999999999999999999 7999999999999975

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.74  E-value=1.7e-08  Score=77.85  Aligned_cols=58  Identities=31%  Similarity=0.524  Sum_probs=54.3

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ...+++++|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++.
T Consensus        96 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~  153 (180)
T 3sl7_A           96 YGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRA  153 (180)
T ss_dssp             TTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             ccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHH
Confidence            45689999998  78999999999999999999999999999988999999999999975

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.73  E-value=4.3e-08  Score=73.58  Aligned_cols=110  Identities=18%  Similarity=0.157  Sum_probs=76.9

Q ss_pred             hhhhc--cCCEEEEecCccchhHHH-hccCCCceEEecCC-c-eeeeehhhhcccCC--CCCcccccccccccCceeEEc
Q 026495           27 TSFAL--QLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSS-A-VFASGTLTANSAAP--SSGVYTVGDFMTTKEELHVVK   99 (237)
Q Consensus        27 ~ai~~--~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp-~-~~~~~~~~~~~~~~--~~~~~~v~~im~~~~~~~~v~   99 (237)
                      ..+..  .++++....+..++.+.+ ......+++..+.. . .......+......  .....+++++|.+  ++.+++
T Consensus        32 dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~  109 (149)
T 3k2v_A           32 DIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMTR--GGIRIR  109 (149)
T ss_dssp             GTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEE--SCCEEC
T ss_pred             HHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCCcccCcHHHHcCC--CCeEEC
Confidence            34444  555554444444555555 55566778887432 2 23333333321122  2357789999998  789999


Q ss_pred             CCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495          100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (237)
Q Consensus       100 ~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  139 (237)
                      +++++.++++.|.+++.+.+||+|++ +++|+||..||++
T Consensus       110 ~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A          110 PGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             TTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            99999999999999999999999975 9999999999974

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.73  E-value=8.5e-08  Score=70.72  Aligned_cols=111  Identities=18%  Similarity=0.177  Sum_probs=75.9

Q ss_pred             hhhccCCEEEEecCccchhHHH-hccCCCceEEecC-Cc-eeeeehhhh-cccC-CCCCcccccccccccCceeEEcCCC
Q 026495           28 SFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRS-SA-VFASGTLTA-NSAA-PSSGVYTVGDFMTTKEELHVVKPTT  102 (237)
Q Consensus        28 ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~s-p~-~~~~~~~~~-~~~~-~~~~~~~v~~im~~~~~~~~v~~~~  102 (237)
                      .+...++++....+..++.+.+ ......+++..+. .. .......+. .... ......+++++|.+  ++.++++++
T Consensus        12 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~   89 (138)
T 2yzi_A           12 YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTR--NLITANVNT   89 (138)
T ss_dssp             TCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBC--SCCEEETTS
T ss_pred             HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCcccCCHHHHhhC--CCeEECCCC
Confidence            3444444444333344444455 4556677887632 22 233333332 1111 12356789999988  799999999


Q ss_pred             CHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       103 ~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ++.++++.|.+++.+.+ |+|++|+++|+||..|+++.+
T Consensus        90 ~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~  127 (138)
T 2yzi_A           90 PLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEAS  127 (138)
T ss_dssp             BHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHH
T ss_pred             cHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHH
Confidence            99999999999999999 999889999999999999753

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.71  E-value=2.3e-08  Score=75.78  Aligned_cols=58  Identities=22%  Similarity=0.399  Sum_probs=53.3

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ....+++++|.+   ++++++++++.++++.|.+++.+.+||+|++|+++|+||..||++.
T Consensus        93 ~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~  150 (157)
T 1o50_A           93 LIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLA  150 (157)
T ss_dssp             CSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             HcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHH
Confidence            456789999986   7889999999999999999999999999988999999999999974

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.70  E-value=3.4e-08  Score=72.46  Aligned_cols=110  Identities=14%  Similarity=0.227  Sum_probs=75.6

Q ss_pred             hhhccCCEEEEecCccchhHHH-hccCCCceEEecC--Cceeeeehhhh-ccc--CCCCCcccccccccccCceeEEcCC
Q 026495           28 SFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRS--SAVFASGTLTA-NSA--APSSGVYTVGDFMTTKEELHVVKPT  101 (237)
Q Consensus        28 ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~s--p~~~~~~~~~~-~~~--~~~~~~~~v~~im~~~~~~~~v~~~  101 (237)
                      .+...+.++....+..++.+.+ ......+++..+.  +........+. ...  .......+++++|.+  ++.+++++
T Consensus        13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~   90 (133)
T 1y5h_A           13 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD--SIYYVDAN   90 (133)
T ss_dssp             HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETT
T ss_pred             HhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcC--CCEEECCC
Confidence            3444555544344344455555 4556677877422  22232332222 111  122346789999988  79999999


Q ss_pred             CCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       102 ~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +++.++++.|.+++.+.+||+|+ |+++|+||.+|+++.
T Consensus        91 ~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~  128 (133)
T 1y5h_A           91 ASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARH  128 (133)
T ss_dssp             CCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHT
T ss_pred             CCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            99999999999999999999997 999999999999975

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.67  E-value=6.1e-08  Score=73.71  Aligned_cols=58  Identities=22%  Similarity=0.381  Sum_probs=53.3

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ....+++++|.+  +++++++++++.+++..|.+++.+.+||+|+ |+++|+||..||++.
T Consensus        75 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~  132 (160)
T 2o16_A           75 AFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTI  132 (160)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHH
T ss_pred             hcccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            346789999998  8999999999999999999999999999997 999999999999975

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.67  E-value=6.7e-08  Score=72.40  Aligned_cols=56  Identities=20%  Similarity=0.366  Sum_probs=51.8

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ...+++++|.+  ++.++++++++.++++.|.+++.  +||+|++|+++|+||..||++.
T Consensus        85 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~  140 (150)
T 3lqn_A           85 EEMKVEQVMKQ--DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKL  140 (150)
T ss_dssp             GGCBGGGTCBS--SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHH
T ss_pred             hcCCHHHHhcC--CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHH
Confidence            56789999998  79999999999999999999886  9999988999999999999975

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.65  E-value=4e-08  Score=75.10  Aligned_cols=107  Identities=18%  Similarity=0.133  Sum_probs=75.3

Q ss_pred             cCCEEEEecCccchhHHH-hccCCCceEEecCC--ceeeeehhhhcccC---CCCCcccccccccccCceeEEcCCCCHH
Q 026495           32 QLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSS--AVFASGTLTANSAA---PSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (237)
Q Consensus        32 ~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp--~~~~~~~~~~~~~~---~~~~~~~v~~im~~~~~~~~v~~~~~l~  105 (237)
                      .+.++....+...+.+.+ ......+++..+..  ........+.....   ......+++++|.+  ++.++.+++++.
T Consensus        36 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~  113 (165)
T 3fhm_A           36 DVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTK--NVVRCQHNSTTD  113 (165)
T ss_dssp             CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGTSBS--SCCCBCTTCBHH
T ss_pred             CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHHhcC--CCeEECCCCcHH
Confidence            355544344344444555 55566778887432  22333333321111   12346789999998  799999999999


Q ss_pred             HHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       106 ~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ++++.|.+++.+.+||+|+ |+++|+||..||++.+
T Consensus       114 ~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~  148 (165)
T 3fhm_A          114 QLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKAR  148 (165)
T ss_dssp             HHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHT
T ss_pred             HHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            9999999999999999998 9999999999999754

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.64  E-value=8.5e-08  Score=72.78  Aligned_cols=98  Identities=18%  Similarity=0.236  Sum_probs=71.2

Q ss_pred             cchhHHH-hccCCCceEEecCC-ce-eeeehhhhccc--CCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCC
Q 026495           43 CRVFSVL-ATSSDRVSALRRSS-AV-FASGTLTANSA--APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT  117 (237)
Q Consensus        43 ~~v~~~~-~~~~~~v~v~~~sp-~~-~~~~~~~~~~~--~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~  117 (237)
                      ..+.+.+ ......+++..+.. .. ......+....  .......+++++|.+..++.++++++++.++++.|.+++.+
T Consensus        36 ~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~  115 (159)
T 3fv6_A           36 YDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQID  115 (159)
T ss_dssp             HHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCc
Confidence            3344444 55566778887332 22 33333333211  23345778999998643588999999999999999999999


Q ss_pred             eEEEEcCCC---cEEEEEehHhHhhh
Q 026495          118 GFPVIDDDW---KLVGLVSDYDLLAL  140 (237)
Q Consensus       118 ~~pVvd~~~---~~~Givt~~dl~~~  140 (237)
                      .+||+|++|   +++|+||..||+++
T Consensus       116 ~lpVvd~~g~~~~~vGiit~~dil~~  141 (159)
T 3fv6_A          116 ALPVIKDTDKGFEVIGRVTKTNMTKI  141 (159)
T ss_dssp             EEEEEEECSSSEEEEEEEEHHHHHHH
T ss_pred             EEEEEeCCCcceeEEEEEEHHHHHHH
Confidence            999999888   99999999999975

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.63  E-value=1.2e-07  Score=79.19  Aligned_cols=110  Identities=13%  Similarity=0.175  Sum_probs=76.8

Q ss_pred             hhhhccCCEEEEecCccchhHHH-hc-----cCCCceEEecCCceeeeehhhhcccCCCCCcccccccccccCceeEEcC
Q 026495           27 TSFALQLPCLLLSRPGCRVFSVL-AT-----SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP  100 (237)
Q Consensus        27 ~ai~~~v~~li~~~~~~~v~~~~-~~-----~~~~v~v~~~sp~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~  100 (237)
                      ..+...+.++....+...+.+.+ ..     ..+.+++..+...-.+.......  .......+++++|.+  +++++++
T Consensus       141 ~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dl--l~~~~~~~v~~im~~--~~~~v~~  216 (286)
T 2oux_A          141 AIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDL--IVNDDDTLIADILNE--RVISVHV  216 (286)
T ss_dssp             HHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHH--TTSCTTSBHHHHSBS--CCCCEET
T ss_pred             HhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHH--HcCCCCCcHHHHcCC--CCeeecC
Confidence            44555565554444444455555 32     34457887633212222222221  112346789999988  7999999


Q ss_pred             CCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       101 ~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ++++.++++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus       217 ~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~  256 (286)
T 2oux_A          217 GDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDV  256 (286)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence            9999999999999999999999988999999999999974

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.61  E-value=1.1e-07  Score=78.99  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=75.9

Q ss_pred             hhhhccCCEEEEecCccchhHHH-hc-----cCCCceEEecCCce--eeeehhhhcccCCCCCcccccccccccCceeEE
Q 026495           27 TSFALQLPCLLLSRPGCRVFSVL-AT-----SSDRVSALRRSSAV--FASGTLTANSAAPSSGVYTVGDFMTTKEELHVV   98 (237)
Q Consensus        27 ~ai~~~v~~li~~~~~~~v~~~~-~~-----~~~~v~v~~~sp~~--~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v   98 (237)
                      ..+...+.++....+...+.+.+ ..     ....+++..+...-  ....+.+...    ....+++++|.+  +++++
T Consensus       139 ~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----~~~~~v~~im~~--~~~~v  212 (278)
T 2yvy_A          139 GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA----DPRTRVAEIMNP--KVVYV  212 (278)
T ss_dssp             GTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS----CTTCBSTTTSBS--SCCCE
T ss_pred             hhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC----CCCCcHHHHhCC--CCeEE
Confidence            34445555544333344444445 22     34567777643212  3333322221    246689999987  79999


Q ss_pred             cCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           99 KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        99 ~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus       213 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i  255 (278)
T 2yvy_A          213 RTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  255 (278)
T ss_dssp             ETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC
T ss_pred             eCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            9999999999999999999999999889999999999999753

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.60  E-value=7.4e-08  Score=74.52  Aligned_cols=105  Identities=14%  Similarity=0.121  Sum_probs=72.4

Q ss_pred             cCCEEEEecCccchhHHH-hccCCCceEEecC--Cce-eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHH
Q 026495           32 QLPCLLLSRPGCRVFSVL-ATSSDRVSALRRS--SAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (237)
Q Consensus        32 ~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~s--p~~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~  107 (237)
                      .+.++-...+...+.+.+ ......+|+..+.  ... ....+.+..... .....+++ +|.   +++++++++++.++
T Consensus        47 ~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~-~~~~~~v~-~~~---~~~~v~~~~~l~~a  121 (173)
T 3ocm_A           47 DVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI-TEGRVRRN-RLR---DPIIVHESIGILRL  121 (173)
T ss_dssp             GCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH-HHSSCCGG-GSB---CCCEECGGGCHHHH
T ss_pred             HeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh-cCCcchhH-hcC---CCeEECCCCcHHHH
Confidence            444554444444555555 6667788888743  222 333333332111 11245677 554   58899999999999


Q ss_pred             HHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       108 ~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      +..|.+++.+.+||+|++|+++|+||..||++.+
T Consensus       122 l~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l  155 (173)
T 3ocm_A          122 MDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAI  155 (173)
T ss_dssp             HHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHH
T ss_pred             HHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHH
Confidence            9999999999999999889999999999999753

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.58  E-value=7.7e-08  Score=71.28  Aligned_cols=98  Identities=15%  Similarity=0.226  Sum_probs=66.4

Q ss_pred             cchhHHH-hccCCCceEEecCC-ce-eeeehhhhcccCC---CCCcccccccccccC----ceeEEcCCCCHHHHHHHHH
Q 026495           43 CRVFSVL-ATSSDRVSALRRSS-AV-FASGTLTANSAAP---SSGVYTVGDFMTTKE----ELHVVKPTTTVDEALEILV  112 (237)
Q Consensus        43 ~~v~~~~-~~~~~~v~v~~~sp-~~-~~~~~~~~~~~~~---~~~~~~v~~im~~~~----~~~~v~~~~~l~~~~~~~~  112 (237)
                      ..+.+.+ ......+++..+.. .. ......+......   .....+++++|.+..    ++.++++++++.++++.|.
T Consensus        31 ~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~  110 (144)
T 2nyc_A           31 IDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIR  110 (144)
T ss_dssp             HHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC------CEECTTSBHHHHHHHHH
T ss_pred             HHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHH
Confidence            3344444 45566678776332 22 2222222211111   123668999997521    4789999999999999999


Q ss_pred             HCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          113 EKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       113 ~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +++.+.+||+|++|+++|+||.+|+++.
T Consensus       111 ~~~~~~l~Vvd~~g~~~Giit~~dil~~  138 (144)
T 2nyc_A          111 KARVHRFFVVDDVGRLVGVLTLSDILKY  138 (144)
T ss_dssp             HHTCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             HCCCCEEEEECCCCCEEEEEEHHHHHHH
Confidence            9999999999988999999999999974

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.57  E-value=1.4e-07  Score=71.10  Aligned_cols=57  Identities=16%  Similarity=0.260  Sum_probs=52.1

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ...+++++|.+  +++++++++++.++++.|.+++.  +||+|++|+++|+||.+|+++.+
T Consensus        81 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~  137 (157)
T 2emq_A           81 ETMKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQL  137 (157)
T ss_dssp             GTCBGGGTCBC--CCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHH
T ss_pred             cCCcHHHHhCC--CCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHH
Confidence            46789999998  89999999999999999999987  99999889999999999999753

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.55  E-value=1.2e-06  Score=79.05  Aligned_cols=94  Identities=21%  Similarity=0.228  Sum_probs=70.6

Q ss_pred             chhHHH-hccCCCceEEec--CC-ce-eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCe
Q 026495           44 RVFSVL-ATSSDRVSALRR--SS-AV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG  118 (237)
Q Consensus        44 ~v~~~~-~~~~~~v~v~~~--sp-~~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~  118 (237)
                      ++.+.+ ....+.+|+..+  .. .. ....+.+..   ......+++++|++ +++++++++.++.+++++|.+++.+.
T Consensus       134 ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~---~~~~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~  209 (511)
T 3usb_A          134 DAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF---IQDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEK  209 (511)
T ss_dssp             HHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT---CCCSSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh---hccCCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCE
Confidence            333444 566778888874  21 11 323222222   23456789999995 25889999999999999999999999


Q ss_pred             EEEEcCCCcEEEEEehHhHhhhc
Q 026495          119 FPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       119 ~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      +||+|++|+++|+||.+|+++..
T Consensus       210 lpVVDe~g~l~GiIT~~Dil~~~  232 (511)
T 3usb_A          210 LPLVDNNGVLQGLITIKDIEKVI  232 (511)
T ss_dssp             EEEECTTSBEEEEEEHHHHHHHH
T ss_pred             EEEEeCCCCEeeeccHHHHHHhh
Confidence            99999999999999999999754

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.54  E-value=1.2e-07  Score=71.78  Aligned_cols=106  Identities=14%  Similarity=0.140  Sum_probs=74.3

Q ss_pred             cCCEEEEecCccchhHHH-hccCCCceEEecCC-ce-eeeehhhhcccCC-C------CCcccccccccccCceeEEcCC
Q 026495           32 QLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSS-AV-FASGTLTANSAAP-S------SGVYTVGDFMTTKEELHVVKPT  101 (237)
Q Consensus        32 ~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp-~~-~~~~~~~~~~~~~-~------~~~~~v~~im~~~~~~~~v~~~  101 (237)
                      .+.++....+...+.+.+ ......+|+..+.. .. ......+...... .      ....+++++|.+  ++.++.++
T Consensus        25 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~  102 (159)
T 1yav_A           25 KVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLT--DIPRLHIN  102 (159)
T ss_dssp             GSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBC--SCCEEETT
T ss_pred             ceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHHhcCC--CCceEcCC
Confidence            455555444445555555 55666788886432 22 3333322221111 1      356789999998  79999999


Q ss_pred             CCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       102 ~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      +++.++++.|.+++.  +||+|++|+++|+||..|+++.+
T Consensus       103 ~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~  140 (159)
T 1yav_A          103 DPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKEL  140 (159)
T ss_dssp             SBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHH
Confidence            999999999998876  99999889999999999999753

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.51  E-value=1.7e-07  Score=61.54  Aligned_cols=41  Identities=15%  Similarity=0.138  Sum_probs=38.6

Q ss_pred             ceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       187 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      +.++.+++++.+|+++|.+++++.+||+| +|+++|++|.+|
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~D   42 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERD   42 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHH
Confidence            56899999999999999999999999998 689999999887

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.50  E-value=1.7e-07  Score=71.05  Aligned_cols=111  Identities=14%  Similarity=0.114  Sum_probs=74.3

Q ss_pred             hhhhccCCEEEEecCccchhHHH-hccCCCceEEec--CC-ce-eeeehhhhcccCC------CCCcccccccccccCc-
Q 026495           27 TSFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRR--SS-AV-FASGTLTANSAAP------SSGVYTVGDFMTTKEE-   94 (237)
Q Consensus        27 ~ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~--sp-~~-~~~~~~~~~~~~~------~~~~~~v~~im~~~~~-   94 (237)
                      ..+...+.++....+..++.+.+ ......+++..+  .. .. ......+......      .....++.++|.+  . 
T Consensus        17 dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~--~~   94 (164)
T 2pfi_A           17 HFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILAR--GC   94 (164)
T ss_dssp             HHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHT--TC
T ss_pred             HHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhcc--cc
Confidence            44555555554444344445555 455567788763  21 22 2232222211111      0124578899987  5 


Q ss_pred             -----eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           95 -----LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        95 -----~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                           +.++.+++++.++++.|.+++.+.+||+| +|+++|+||..||++.
T Consensus        95 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~  144 (164)
T 2pfi_A           95 PTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKA  144 (164)
T ss_dssp             CCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             cccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHH
Confidence                 68899999999999999999999999999 7999999999999975

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.43  E-value=3.6e-07  Score=70.66  Aligned_cols=59  Identities=14%  Similarity=0.227  Sum_probs=54.0

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ....+++++|.+  ++.++++++++.+++..|.+++.+.+||+| +|+++|+||..||++.+
T Consensus       105 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l  163 (185)
T 2j9l_A          105 PPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHI  163 (185)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            356789999988  799999999999999999999999999999 79999999999999753

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.42  E-value=1.6e-07  Score=84.51  Aligned_cols=61  Identities=31%  Similarity=0.362  Sum_probs=0.0

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ...+++++|++.++++++++++++.+++++|.+++.+.+||+|++|+++|+||.+||++..
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~  219 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQ  219 (503)
T ss_dssp             -------------------------------------------------------------
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhh
Confidence            4668999999822399999999999999999999999999999999999999999999753

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.33  E-value=6.8e-07  Score=73.31  Aligned_cols=53  Identities=23%  Similarity=0.277  Sum_probs=49.2

Q ss_pred             CCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC--CcEEEEEEccc
Q 026495          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GWNYHKRKCSK  228 (237)
Q Consensus       176 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~iGvIt~~d  228 (237)
                      ...++++|++++.++.+++++.+|.++|.+++++.+||||++  ++++|+|+++|
T Consensus        12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~d   66 (250)
T 2d4z_A           12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTE   66 (250)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHH
T ss_pred             CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHH
Confidence            568999999999999999999999999999999999999963  68999999987

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.31  E-value=6.7e-07  Score=79.95  Aligned_cols=82  Identities=20%  Similarity=0.274  Sum_probs=64.4

Q ss_pred             CCCceEEecCCce--eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEE
Q 026495           53 SDRVSALRRSSAV--FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (237)
Q Consensus        53 ~~~v~v~~~sp~~--~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~G  130 (237)
                      .+.+++..+...-  ....+.+..+    ..+.+++++|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|
T Consensus       191 ~~~ipVvd~~~~lvGiVt~~Dll~~----~~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvG  264 (473)
T 2zy9_A          191 IYYIYVVDEKGRLKGVLSLRDLIVA----DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVG  264 (473)
T ss_dssp             EEEEEEECTTSBEEEEEEHHHHHHS----CTTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEE
T ss_pred             eeEEEEECCCCcEEEEEEHHHHhcC----CCCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEE
Confidence            4567777643211  3333333221    246689999987  7999999999999999999999999999999999999


Q ss_pred             EEehHhHhhh
Q 026495          131 LVSDYDLLAL  140 (237)
Q Consensus       131 ivt~~dl~~~  140 (237)
                      +||.+|+++.
T Consensus       265 iIT~~Dil~~  274 (473)
T 2zy9_A          265 IVTVDDVLDV  274 (473)
T ss_dssp             EEEHHHHHHH
T ss_pred             EEehHhhHHH
Confidence            9999999975

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.12  E-value=2.2e-06  Score=79.19  Aligned_cols=54  Identities=20%  Similarity=0.050  Sum_probs=49.3

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +++++|++  ++.++++++++.++.+.|.+++.+++||+ ++|+++|+||.+|+++.
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~  622 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYG  622 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEEC
T ss_pred             ccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHH
Confidence            38899998  89999999999999999999999999999 57999999999999974

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.10  E-value=8.6e-07  Score=79.64  Aligned_cols=93  Identities=19%  Similarity=0.270  Sum_probs=58.4

Q ss_pred             hHHH-hccCCCceEEecCCce--eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEE
Q 026495           46 FSVL-ATSSDRVSALRRSSAV--FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI  122 (237)
Q Consensus        46 ~~~~-~~~~~~v~v~~~sp~~--~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv  122 (237)
                      .+.+ ....+.+|+..+...-  ....+.+..   ......+++++|++++++++++++.++.+++++|.+++.+.+||+
T Consensus       112 ~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~---~~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVV  188 (496)
T 4fxs_A          112 MELTHYHGFAGFPVVTENNELVGIITGRDVRF---VTDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVV  188 (496)
T ss_dssp             HHHHTSSCCCEEEEECSSSBEEEEEEHHHHTT---CCCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEE
T ss_pred             HHHHHHcCCcEEEEEccCCEEEEEEEHHHHhh---cccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence            3344 4556678888743221  333333321   234567899999943248899999999999999999999999999


Q ss_pred             cCCCcEEEEEehHhHhhhc
Q 026495          123 DDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       123 d~~~~~~Givt~~dl~~~~  141 (237)
                      |++|+++|+||.+|+++..
T Consensus       189 De~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          189 NDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             CTTSBCCEEECCC-----C
T ss_pred             cCCCCEEEeehHhHHHHhh
Confidence            9999999999999999754

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.08  E-value=2.8e-06  Score=76.19  Aligned_cols=62  Identities=31%  Similarity=0.388  Sum_probs=0.0

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ....+++++|++++++++++++.++.+++++|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus       144 ~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          144 NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             --------------------------------------------------------------
T ss_pred             ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhc
Confidence            34668999999432488999999999999999999999999999999999999999999754

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.08  E-value=7.2e-06  Score=74.21  Aligned_cols=113  Identities=8%  Similarity=0.081  Sum_probs=79.0

Q ss_pred             hhhhhccCCEEEEe-cCccchhHHH-hccCCCceEEe--cCCce-eeeehhhhccc--CCCCCcccccccccccCceeEE
Q 026495           26 RTSFALQLPCLLLS-RPGCRVFSVL-ATSSDRVSALR--RSSAV-FASGTLTANSA--APSSGVYTVGDFMTTKEELHVV   98 (237)
Q Consensus        26 ~~ai~~~v~~li~~-~~~~~v~~~~-~~~~~~v~v~~--~sp~~-~~~~~~~~~~~--~~~~~~~~v~~im~~~~~~~~v   98 (237)
                      ...+...+.++.-. .+..++.+.+ ......+||..  +.... ....+.+....  .......+|+++|.+  +++++
T Consensus       387 ~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~~--~~~~v  464 (527)
T 3pc3_A          387 AELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALNK--RVIRL  464 (527)
T ss_dssp             GGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEET--TCCEE
T ss_pred             HHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHhcC--CCeEE
Confidence            34455566555555 5455566666 66677889987  22223 43443332111  123456789999998  89999


Q ss_pred             cCCCCHHHHHHHHHHCCCCeEEEEcCC----CcEEEEEehHhHhhhcc
Q 026495           99 KPTTTVDEALEILVEKRITGFPVIDDD----WKLVGLVSDYDLLALDS  142 (237)
Q Consensus        99 ~~~~~l~~~~~~~~~~~~~~~pVvd~~----~~~~Givt~~dl~~~~~  142 (237)
                      ++++++.+++++|.+++  .+||+|++    |+++|+||..||++++.
T Consensus       465 ~~~~~l~~a~~~m~~~~--~~pVVd~~~~~~g~lvGIVT~~Dll~~l~  510 (527)
T 3pc3_A          465 NESEILGKLARVLEVDP--SVLILGKNPAGKVELKALATKLDVTTFIA  510 (527)
T ss_dssp             ETTSBHHHHHHHHTTCS--EEEEEEECSSSCEEEEEEEEHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHhhCC--EEEEEeCCcccCCeEEEEEEHHHHHHHHH
Confidence            99999999999997665  47999974    89999999999998643

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.97  E-value=6.9e-06  Score=73.60  Aligned_cols=58  Identities=41%  Similarity=0.591  Sum_probs=0.0

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ...+++++|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++.
T Consensus       148 ~~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~  205 (486)
T 2cu0_A          148 EGKLVKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVAR  205 (486)
T ss_dssp             ------------------------------------------------------------
T ss_pred             CCCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHh
Confidence            35678999997  78899999999999999999999999999999999999999999975

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.91  E-value=9.3e-06  Score=72.88  Aligned_cols=62  Identities=34%  Similarity=0.541  Sum_probs=4.2

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhcc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~  142 (237)
                      ...+++++|++.++++++++++++.+++++|.+++.+.+||+|++|+++|+||..|+++...
T Consensus       153 ~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          153 LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             --------------------------------------------------------CHHHHT
T ss_pred             CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhc
Confidence            35689999985335889999999999999999999999999999999999999999998643

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.85  E-value=4.3e-05  Score=68.46  Aligned_cols=61  Identities=26%  Similarity=0.365  Sum_probs=54.6

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhcc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~  142 (237)
                      ...+++++|++. +++++++++++.++++.|.+++.+.+||+|++|+++|++|.+|+++...
T Consensus       150 ~~~~v~~im~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          150 YNAPISEHMTSE-HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             SSSBTTTSCCCS-CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHHcCCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence            466899999841 3788999999999999999999999999999999999999999998654

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.65  E-value=6.6e-06  Score=73.45  Aligned_cols=58  Identities=29%  Similarity=0.385  Sum_probs=0.0

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ...+|+++|++  ++++++.+.++++|.++|.++++..+||||++|+++|+||.+|+.+.
T Consensus       198 ~~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          198 AETPIKSVMTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             ------------------------------------------------------------
T ss_pred             cceEhhhhccc--ceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhh
Confidence            45689999998  89999999999999999999999999999999999999999999874

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.49  E-value=3.4e-05  Score=69.59  Aligned_cols=62  Identities=27%  Similarity=0.342  Sum_probs=42.9

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhcc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~  142 (237)
                      ...+++++|.+..+++++++++++.+++++|.+++.+.+||+|++|+++|+||.+|+++...
T Consensus       171 ~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          171 HTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             ----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             CCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence            45678899986335889999999999999999999999999999999999999999997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	3e-16
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	7e-06
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-15
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-08
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	6e-06
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	8e-15
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	3e-05
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	6e-14
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	1e-06
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	8e-06
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	8e-14
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-06
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	9e-06
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	5e-13
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	9e-08
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	7e-13
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	7e-05
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	1e-04
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	7e-13
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	2e-12
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	2e-06
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	8e-05
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	8e-11
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	2e-05
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	0.003
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	7e-10
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-05
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-04
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	8e-10
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-06
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	7e-04
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	1e-09
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	2e-05
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	6e-05
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	1e-09
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	2e-07
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	1e-08
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	4e-08
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-08
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	4e-05
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	3e-08
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	0.002
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	4e-08
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	6e-06
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	2e-05
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	6e-08
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	2e-05
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-07
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-04
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	1e-07
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-05
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	7e-07
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	6e-06
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	4e-05
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	9e-07
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	3e-06
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	4e-06
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	7e-04
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	1e-05
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	4e-04
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	5e-05
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	7e-04

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.4 bits (174), Expect = 3e-16
 Identities = 24/135 (17%), Positives = 40/135 (29%), Gaps = 13/135 (9%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-VIDDDWKLVGLVSDYDLLALDS 142
              D + T  +L V   +  V +A   LV   +   P         VG+++  D + +  
Sbjct: 14  RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILH 73

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
                        E                     +         V +    +L DA   
Sbjct: 74  RYYKSALVQIYELEEHKIETWRE------------VYLQDSFKPLVCISPNASLFDAVSS 121

Query: 203 LLETKYRRLPVVDAD 217
           L+  K  RLPV+D +
Sbjct: 122 LIRNKIHRLPVIDPE 136

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.5 bits (99), Expect = 7e-06
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 51  TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEI 110
           T +D ++ L R                  +                 + P  ++ +A+  
Sbjct: 64  TITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPL--VCISPNASLFDAVSS 121

Query: 111 LVEKRITGFPVIDDDW-KLVGLVSDYDLL 138
           L+  +I   PVID +    + +++   +L
Sbjct: 122 LIRNKIHRLPVIDPESGNTLYILTHKRIL 150

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 69.7 bits (169), Expect = 1e-15
 Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 5/138 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +  +      + +V   T +  AL+ L+       PV+D +  LVG+V + DLL    I
Sbjct: 5   EIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNE---VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAA 200
               ++        +      +     +K   +   K V ++MT   +V      + + A
Sbjct: 63  VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVA 122

Query: 201 RLLLETKYRRLPVVDADG 218
             + +    +LPV+  +G
Sbjct: 123 LKMAKYSIEQLPVIRGEG 140

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYH 222
           +         +V E T L+ A + LL +    LPVVD++G    
Sbjct: 6   IEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVG 49

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.7 bits (99), Expect = 6e-06
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT      V  P  TV E    + +  I   PVI  +  L+GL+ D+DLL
Sbjct: 100 PVAEIMTRDV--IVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 152

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 8e-15
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 9/141 (6%)

Query: 84  TVGDFMTTKEELHVV----KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDL 137
              D M  +    ++    + + TV++   I+ E   +GFPV+   +  +LVG V   DL
Sbjct: 4   LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 63

Query: 138 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 197
           +     +   +        +  T  +               + +++  +P  V + T +E
Sbjct: 64  IISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLK---LRNILDLSPFTVTDLTPME 120

Query: 198 DAARLLLETKYRRLPVVDADG 218
               +  +   R+  V     
Sbjct: 121 IVVDIFRKLGLRQCLVTHNGR 141

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + +        V   T ++  ++I  +  +    V  +  +L+G+++  D+L
Sbjct: 101 KLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVL 152

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 64.6 bits (156), Expect = 6e-14
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 15/137 (10%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
           V  V   ++ K    VV+  T ++E ++ ++E  +T    +  D KLVG++    LL   
Sbjct: 3   VKDVCKLISLK--PTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLL--- 57

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                    ++  + +   K   ++M   PV V   T LE+A +
Sbjct: 58  ---------KVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALK 107

Query: 202 LLLETKYRRLPVVDADG 218
           L+++   + +PVVD  G
Sbjct: 108 LMIDNNIQEMPVVDEKG 124

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              + M    +   V   T ++EAL+++++  I   PV+D+  ++VG ++  ++L
Sbjct: 85  NASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 136

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.3 bits (98), Expect = 8e-06
 Identities = 14/46 (30%), Positives = 19/46 (41%)

Query: 177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYH 222
           K V  L++  P VV E T +E+    +LE    R   V  D     
Sbjct: 4   KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVG 49

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.4 bits (156), Expect = 8e-14
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 21/137 (15%)

Query: 83  YTVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
             +GD  + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L 
Sbjct: 6   IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLI 65

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                     S+   +                                  +   L     
Sbjct: 66  KGGIYNDLSLSVGEALMRRSD--------------------DFEGVYTCTKNDKLSTIMD 105

Query: 202 LLLETKYRRLPVVDADG 218
            + + +  R  VVD  G
Sbjct: 106 NIRKARVHRFFVVDDVG 122

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 10/43 (23%), Positives = 23/43 (53%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 92  YTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 134

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (98), Expect = 9e-06
 Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYH 222
            L    G  +  +        + TT + D  ++L + +   +P++D +G+  +
Sbjct: 3   FLKIPIGD-LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLIN 54

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.2 bits (150), Expect = 5e-13
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 21/136 (15%)

Query: 84  TVGDFM-TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           ++ +    T   + +V+ TT V  AL I V+ R++  PV+D+  ++V + S +D++ L +
Sbjct: 10  SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA 69

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
                  D S+                    T             +       LE     
Sbjct: 70  EKTYNNLDVSV--------------------TKALQHRSHYFEGVLKCYLHETLEAIINR 109

Query: 203 LLETKYRRLPVVDADG 218
           L+E +  RL VVD   
Sbjct: 110 LVEAEVHRLVVVDEHD 125

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.5 bits (112), Expect = 9e-08
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                       +       T++  +  LVE  +    V+D+   + G+VS  D+L
Sbjct: 84  LQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 137

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 62.4 bits (150), Expect = 7e-13
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 2/135 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            VGD M    ++  +  T+T  + L +L + ++  FP +D       L S         +
Sbjct: 12  QVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLL 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                A      E   T +     ++             +  +P  + E T+L+    L 
Sbjct: 70  QRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLF 129

Query: 204 LETKYRRLPVVDADG 218
                 R  V     
Sbjct: 130 SLLGLDRAYVTSMGK 144

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCS 227
           VGD+M      +  T+   D   +L +TK +  P VD    N       
Sbjct: 13  VGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSID 61

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               +    +   T++ +   +     +    V     KLVG+V+  ++ 
Sbjct: 107 CRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMG-KLVGVVALAEIQ 155

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 62.7 bits (151), Expect = 7e-13
 Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 7/135 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T  D + T   L V   T  V  +L +L    I   P+ D +        +     L   
Sbjct: 21  TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMA 73

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                 +  +LL     +     + P  + V    +L DA   +
Sbjct: 74  DFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAM 133

Query: 204 LETKYRRLPVVDADG 218
            +++ RR+P++D DG
Sbjct: 134 SKSRARRIPLIDVDG 148

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 60.7 bits (146), Expect = 2e-12
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 21/134 (15%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D MT     H +  T T+++A  ++    I   P++D + KL+G+VS  DLLA    
Sbjct: 3   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLA---- 56

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                          +   +     +  S      + ++M      V     L+++A  +
Sbjct: 57  ---------------AQESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYM 101

Query: 204 LETKYRRLPVVDAD 217
            + K   LPVV  D
Sbjct: 102 QKHKIGCLPVVAKD 115

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKR 224
           V D+MT  P  +  T  L DA  L+     R +P+VDA+       
Sbjct: 4   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIV 49

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 39.1 bits (90), Expect = 8e-05
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V P   + E+   + + +I   PV+  D  LVG+++D D +
Sbjct: 86  TSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFV 127

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 55.9 bits (134), Expect = 8e-11
 Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 28/135 (20%)

Query: 84  TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           TV   +  K   +  + P  +V  A++ +    I    V+ D+   VG++++ D      
Sbjct: 3   TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKL-VGILTERD------ 55

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
                                  +   L        V ++MT     V      ED   L
Sbjct: 56  --------------------FSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMAL 95

Query: 203 LLETKYRRLPVVDAD 217
           + E + R LPV+D  
Sbjct: 96  ITEMRVRHLPVLDDG 110

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V    T ++ + ++ E R+   PV+DD  K++GL+S  DL+
Sbjct: 81  AYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 122

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 3/46 (6%)

Query: 177 KMVGDLMTP---APVVVRETTNLEDAARLLLETKYRRLPVVDADGW 219
           K V  L+       V +    ++ +A + +       L V+  +  
Sbjct: 2   KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKL 47

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 53.3 bits (127), Expect = 7e-10
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 29/134 (21%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +  +MT   +L  VKP+T+V EA  +++E  +    VI+DD  +VG  +  D++    +
Sbjct: 6   PIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV 63

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
            G                                 V  +MT   +     T L +  R +
Sbjct: 64  PG---------------------------LPYDIPVERIMTRNLITANVNTPLGEVLRKM 96

Query: 204 LETKYRRLPVVDAD 217
            E + + + + +  
Sbjct: 97  AEHRIKHILIEEEG 110

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYH 222
           +   MT   + V+ +T++++A+RL++E     L V++ DG    
Sbjct: 7   IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVG 50

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                 T + E L  + E RI    + ++  K+VG+ +  DLL
Sbjct: 81  ITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLL 122

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 53.0 bits (126), Expect = 8e-10
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 28/132 (21%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D++     
Sbjct: 2   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLA 59

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
           +G                             N    G+L   +   V    ++++   ++
Sbjct: 60  AG--------------------------LDPNTATAGELARDSIYYVDANASIQEMLNVM 93

Query: 204 LETKYRRLPVVD 215
            E + RR+PV+ 
Sbjct: 94  EEHQVRRVPVIS 105

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.3 bits (101), Expect = 2e-06
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYH 222
             D+M      V E   L  AA+ + E     LP+   D   + 
Sbjct: 3   ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHG 46

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.4 bits (83), Expect = 7e-04
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + V    ++ E L ++ E ++   PVI +  +LVG+V++ D+ 
Sbjct: 78  YYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIA 119

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 53.1 bits (126), Expect = 1e-09
 Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 21/135 (15%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +   M       ++     +  A + + E  I    V ++  +                
Sbjct: 2   NIETLMIKN--PPILSKEDRLGSAFKKINEGGIGRIIVANEKIE---------------- 43

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
              G            ++   +  Q  L   +   + D MTP PV V  T++   A  ++
Sbjct: 44  ---GLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIM 100

Query: 204 LETKYRRLPVVDADG 218
           +   +  LPVVD + 
Sbjct: 101 VTRNFGSLPVVDIND 115

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 8/48 (16%), Positives = 17/48 (35%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKC 226
           +  LM   P ++ +   L  A + + E    R+ V +         + 
Sbjct: 3   IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRD 50

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 39.6 bits (91), Expect = 6e-05
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            + D+MT       V  T+    A+ I+V +     PV+D + K VG+V++ + L L
Sbjct: 75  PIIDYMTPNP--VTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLL 129

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 52.7 bits (125), Expect = 1e-09
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 23/137 (16%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
           ++ V  FM+T  ++  +     +D+A+++++ +     PVIDDD K+VG           
Sbjct: 1   IFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVG----------- 47

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                      +              +       GK+V D+M    V + E  ++  AA 
Sbjct: 48  ----------IVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAA 97

Query: 202 LLLETKYRRLPVVDADG 218
            ++  +   L +++ D 
Sbjct: 98  EMIVKRIGSLLILNKDN 114

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKC 226
           V   M+     + +   L+ A +L+L   +RRLPV+D D         
Sbjct: 4   VKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTV 51

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 49.8 bits (118), Expect = 1e-08
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 31/125 (24%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSM 153
           V+ P   V +  E        G P+ D      +LVG++S  D+  L             
Sbjct: 8   VLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKE----------- 56

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
               +   +   E+                    VV      L++A  +L  +K  +LP+
Sbjct: 57  ----EEHDRFLEEIMT-------------KREDLVVAPAGITLKEANEILQRSKKGKLPI 99

Query: 214 VDADG 218
           V+ + 
Sbjct: 100 VNEND 104

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 48.2 bits (114), Expect = 4e-08
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 76  AAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY 135
                    + + MT +E+L V     T+ EA EIL   +    P+++++ +LV +++  
Sbjct: 54  LKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIART 113

Query: 136 DLL 138
           DL 
Sbjct: 114 DLK 116

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 28/135 (20%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V   M +      V   TTV +A++I+ E  + G  V DD+   VGL+S+         
Sbjct: 4   RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSE--------- 52

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                        K +   +  +M      V+   +++D A  L
Sbjct: 53  -----------------RSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYL 95

Query: 204 LETKYRRLPVVDADG 218
            E    R  VVD  G
Sbjct: 96  SENGLERCAVVDDPG 110

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               V +    L E  +    V+DD  ++VG+V+  DL 
Sbjct: 84  SDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS 122

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYH 222
           V  +M      V   T + DA +++ E     L V D +G +  
Sbjct: 5   VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVG 48

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 49.1 bits (116), Expect = 3e-08
 Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 40/140 (28%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLL 138
             G  MT   E   V+   TV+E L  L         I    V+D+  +L G++S  DL+
Sbjct: 2   EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI 59

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
             D                                     V ++M P  V VR  T+ E+
Sbjct: 60  VAD---------------------------------PRTRVAEIMNPKVVYVRTDTDQEE 86

Query: 199 AARLLLETKYRRLPVVDADG 218
            ARL+ +  +  LPVVD +G
Sbjct: 87  VARLMADYDFTVLPVVDEEG 106

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 87  DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + M  K     V+  T  +E   ++ +   T  PV+D++ +LVG+V+  D+L
Sbjct: 69  EIMNPKV--VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 118

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.4 bits (114), Expect = 4e-08
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 35/134 (26%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V  ++T   +  +V+ + TV E L  + + +     V D +    G+V+           
Sbjct: 3   VKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNK---------- 50

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
                                  + LL       V + ++     V E  N+  A  L L
Sbjct: 51  -----------------------EDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFL 87

Query: 205 ETKYRRLPVVDADG 218
           E +   LPVVD + 
Sbjct: 88  EHQEPYLPVVDEEM 101

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.2 bits (98), Expect = 6e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           F         V     +  AL + +E +    PV+D++ +L G VS +D L
Sbjct: 63  FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFL 113

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 7/44 (15%), Positives = 16/44 (36%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYH 222
           V   +T    +V E+  + +    + + +     V D +G    
Sbjct: 3   VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRG 46

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 47.9 bits (113), Expect = 6e-08
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 40/140 (28%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLL 138
           T G  MTT  E   +    TV  A+ +L  +      I    V+D +  LVG++S     
Sbjct: 2   TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVIS----- 54

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
                                       ++ L+   +  ++ D++    + V    + ED
Sbjct: 55  ----------------------------LRDLIVNDDDTLIADILNERVISVHVGDDQED 86

Query: 199 AARLLLETKYRRLPVVDADG 218
            A+ + +  +  +PV D D 
Sbjct: 87  VAQTIRDYDFLAVPVTDYDD 106

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + D +     +  V      ++  + + +      PV D D  L+G+V+  D++
Sbjct: 67  IADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDII 118

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 30/133 (22%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V D M T  ++  +  T ++++ L   VE       V+ +                  I 
Sbjct: 2   VEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGV-------------RVGIV 46

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
            +     ++    D                    V ++M    V +     +++AA  ++
Sbjct: 47  TTWDVLEAIAEGDDLAE---------------VKVWEVMERDLVTISPRATIKEAAEKMV 91

Query: 205 ETKYRRLPVVDAD 217
           +    RL V + D
Sbjct: 92  KNVVWRLLVEEDD 104

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             + P  T+ EA E +V+  +    V +DD +++G++S  D+L
Sbjct: 75  VTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISATDIL 116

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 47.6 bits (112), Expect = 1e-07
 Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 21/135 (15%)

Query: 85  VGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           +      T   L      T V + +++L EK I+  P+++ +  L+ +    D++ L   
Sbjct: 3   LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                 D S+   +                                 R T  L+     +
Sbjct: 63  GDYSNLDLSVGEALLKRPA--------------------NFDGVHTCRATDRLDGIFDAI 102

Query: 204 LETKYRRLPVVDADG 218
             ++  RL VVD + 
Sbjct: 103 KHSRVHRLFVVDENL 117

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                + +H  + T  +D   + +   R+    V+D++ KL G++S  D+L
Sbjct: 79  RPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 129

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.9 bits (105), Expect = 7e-07
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 35/134 (26%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V   MT       +    T + ALE+  + ++  FPV++ + K                 
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGK----------------- 43

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
                                 V+++L   + + +  L+     VV+E   L+ AA+L+L
Sbjct: 44  ----------------LVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLML 87

Query: 205 ETKYRRLPVVDADG 218
           E  YRR+ VVD+ G
Sbjct: 88  EYDYRRVVVVDSKG 101

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.2 bits (98), Expect = 6e-06
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYH 222
           V  +MT  PV +        A  L  + K R  PVV+ +G    
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVG 46

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.9 bits (92), Expect = 4e-05
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 95  LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + VVK   T+ +A ++++E       V+D   K VG+++  D++
Sbjct: 70  VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII 113

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.6 bits (104), Expect = 9e-07
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVG FM   +++  V+    ++ AL +L +   T  PV+D  ++L GL+    ++
Sbjct: 3   TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM 57

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYH 222
           ++V + M    + V +   L D A+++ E     + VVD +     
Sbjct: 4   EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGI 49

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 31/135 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V ++M T  ++  V     +++  +++ EK I    V+D +  +  +     + A+   
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKG 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                        K+      + MT + + +RE + +  A  L+
Sbjct: 63  -----------------------------KSLETKAEEFMTASLITIREDSPITGALALM 93

Query: 204 LETKYRRLPVVDADG 218
            +   R LPVVD  G
Sbjct: 94  RQFNIRHLPVVDDKG 108

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 36.4 bits (83), Expect = 7e-04
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDSI 143
            ++ +  I   PV+DD   L G++S  D+  A+D +
Sbjct: 91  ALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 33/124 (26%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMF 154
            + P   V EA E++   RI+G P+++     KLVG++++ D+  +              
Sbjct: 9   FLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS------------- 55

Query: 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 214
                               N  +   + +   V     T+LE A R+L E +  +LP+V
Sbjct: 56  ------------------DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLV 97

Query: 215 DADG 218
           D  G
Sbjct: 98  DNSG 101

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 99  KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              T ++ A  IL E RI   P++D+  +L GL++  D+ 
Sbjct: 74  AVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE 113

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 39.6 bits (91), Expect = 5e-05
 Identities = 15/137 (10%), Positives = 39/137 (28%), Gaps = 33/137 (24%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALD 141
              + +        +  T T+ E    L + R+    +    +  + V            
Sbjct: 2   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVA----------- 48

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                  + ++ +  + +       +  +P+ V +T  +  AA 
Sbjct: 49  ------------------VVSERDILRAVAQRLDLDGPAMPIANSPITVLDTDPVHVAAE 90

Query: 202 LLLETKYRRLPVVDADG 218
            +     R + VV+ +G
Sbjct: 91  KMRRHNIRHVVVVNKNG 107

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 36.5 bits (83), Expect = 7e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V  T  V  A E +    I    V++ + +LVG++S  DL 
Sbjct: 77  ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.87
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.86
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.86
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.86
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.85
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.85
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.85
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.85
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.84
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.84
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.83
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.82
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.82
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.82
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.81
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.8
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.79
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.79
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.76
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.75
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.74
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.73
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.71
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.7
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.68
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.66
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.1
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.09
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.07
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.07
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.05
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.04
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.01
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.97
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.97
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.94
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.93
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.88
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.84
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.83
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.81
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.77
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.77
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.75
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.65
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.64
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.63
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.47
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.46
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.41
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.41
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.16

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=1.2e-21  Score=146.66  Aligned_cols=118  Identities=25%  Similarity=0.263  Sum_probs=105.4

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      ++|+++|.+  ++.++++++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.....+.                
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~----------------   64 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK----------------   64 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC----------------
T ss_pred             EEHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcc----------------
Confidence            589999999  89999999999999999999999999999988999999999999864332221                


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                .....+++++|.++++++.+++++.+|+++|.+++.+++||+|++|+++|+||+.|
T Consensus        65 ----------~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~D  120 (142)
T d1pvma4          65 ----------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTD  120 (142)
T ss_dssp             ----------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHH
T ss_pred             ----------cccccccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHH
Confidence                      11246799999999999999999999999999999999999998999999999876

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=2.4e-21  Score=141.04  Aligned_cols=111  Identities=26%  Similarity=0.290  Sum_probs=103.2

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      ++|+++|.+  +++++++++|+.+|++.|.+.+++.+||+|++|+++|+++.+|++++.                     
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~---------------------   57 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD---------------------   57 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC---------------------
T ss_pred             CCchhhhcC--CCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhh---------------------
Confidence            478999999  899999999999999999999999999999899999999999998641                     


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                  ...++.++|..+++++++++++.++++.|.+++...+||+|++|+++|+||..|
T Consensus        58 ------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~d  111 (121)
T d1vr9a3          58 ------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHD  111 (121)
T ss_dssp             ------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHH
T ss_pred             ------------ccccccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHH
Confidence                        246899999999999999999999999999999999999999999999999875

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=6.7e-22  Score=144.43  Aligned_cols=116  Identities=22%  Similarity=0.335  Sum_probs=101.9

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (237)
                      +++++|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+||++.....+.                 
T Consensus         2 t~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~-----------------   62 (123)
T d1y5ha3           2 TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL-----------------   62 (123)
T ss_dssp             CHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC-----------------
T ss_pred             CHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCC-----------------
Confidence            68899998  89999999999999999999999999999988999999999999764322211                 


Q ss_pred             HHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                               ......++++|.++++++++++++.+|++.|.+++++++||+| +|+++|+||++|
T Consensus        63 ---------~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~D  117 (123)
T d1y5ha3          63 ---------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEAD  117 (123)
T ss_dssp             ---------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             ---------CcccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHH
Confidence                     1123567899999999999999999999999999999999999 689999999986

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=1.8e-21  Score=147.56  Aligned_cols=145  Identities=19%  Similarity=0.242  Sum_probs=107.5

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      ++++++++|.+  +++++++++++.+|++.|.+++++++||+|++|+++|++|..|+++................. ...
T Consensus         2 ~~~~v~~~m~r--~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~-~~~   78 (156)
T d2yzqa1           2 KGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASS-EEE   78 (156)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC---------------
T ss_pred             CCCCHHHHhcC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccch-hhh
Confidence            46789999998  899999999999999999999999999999999999999999998754333221111100000 000


Q ss_pred             hhh----HHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKT----FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~----~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      +..    ..............++.++|++++.++.+++++.++++.|.+++++++||+|++|+++|+||++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~D  150 (156)
T d2yzqa1          79 WILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFD  150 (156)
T ss_dssp             ------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHH
T ss_pred             hhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHH
Confidence            000    00011111123466899999999999999999999999999999999999998999999999986

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=4.6e-22  Score=145.15  Aligned_cols=111  Identities=30%  Similarity=0.426  Sum_probs=85.2

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      ++|+++|.+  +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+|++..                      
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~----------------------   56 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN----------------------   56 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-------------------------
T ss_pred             CCcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhh----------------------
Confidence            478999999  89999999999999999999999999999999999999999999853                      


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                 .....+.++|.++++++.+++++.+++++|.+++++.+||+|++|+++|+||++|
T Consensus        57 -----------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~d  111 (122)
T d2yzqa2          57 -----------PDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGD  111 (122)
T ss_dssp             ------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             -----------hcccchhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHH
Confidence                       1235788999999999999999999999999999999999999999999999876

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.85  E-value=1.8e-21  Score=143.02  Aligned_cols=110  Identities=25%  Similarity=0.360  Sum_probs=100.8

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHC-----CCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (237)
                      +++.+|++  +++++++++|+.+|++.|+++     +.+.+||+|++|++.|+++.+++...                  
T Consensus         2 taG~iM~~--d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~------------------   61 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN------------------   61 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS------------------
T ss_pred             ChhHhCCC--CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccc------------------
Confidence            57889999  899999999999999999876     46899999999999999999999852                  


Q ss_pred             cchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                     ....++.++|.++++++++++++.+|+++|.+++++.+||||++|+++|+||.+|
T Consensus        62 ---------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~D  116 (127)
T d2ouxa2          62 ---------------DDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDD  116 (127)
T ss_dssp             ---------------CTTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHH
T ss_pred             ---------------cccEEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHH
Confidence                           1257899999999999999999999999999999999999998999999999876

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.85  E-value=1.6e-21  Score=145.38  Aligned_cols=124  Identities=27%  Similarity=0.258  Sum_probs=104.0

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      ++|+++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|++++.........             
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~-------------   66 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSA-------------   66 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC----------------
T ss_pred             EEHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhh-------------
Confidence            478999998  89999999999999999999999999999999999999999999875432211000             


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                            .........+++++|.+++.++++++++.+|+++|.+++.+.+||+| +|+++|+||++|
T Consensus        67 ------~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~D  125 (139)
T d2o16a3          67 ------QGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSD  125 (139)
T ss_dssp             ------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHH
T ss_pred             ------cccccccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHH
Confidence                  00001235689999999999999999999999999999999999999 699999999876

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=8.4e-21  Score=140.20  Aligned_cols=116  Identities=24%  Similarity=0.325  Sum_probs=103.5

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      .+|+++|++  ++.++++++++.+|++.|.+++++.+||+|++|+++|++|..|+++.....+                 
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~-----------------   65 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPG-----------------   65 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC-----------------
T ss_pred             CcHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhcc-----------------
Confidence            479999998  8999999999999999999999999999999999999999999987532211                 


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                ...+.+++++|.++++++++++++.++++.|.+++++++||++ +|+++|+||.+|
T Consensus        66 ----------~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~D  120 (132)
T d2yzia1          66 ----------LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSD  120 (132)
T ss_dssp             ----------CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             ----------CccceeEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHH
Confidence                      1124689999999999999999999999999999999999886 799999999876

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.84  E-value=8.2e-21  Score=139.30  Aligned_cols=117  Identities=23%  Similarity=0.333  Sum_probs=104.5

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      ++..|+++|++  +++++++++++.+|.++|.+++++.+||+|+ |+++|++|.+|+++.....                
T Consensus         2 ~~~~V~d~m~~--~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~-~~~~Givt~~dl~~~~~~~----------------   62 (127)
T d2ef7a1           2 EEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGKG----------------   62 (127)
T ss_dssp             CCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHHTT----------------
T ss_pred             CccCHHHhCCC--CCeEECCcCcHHHHHHHHHHcCCceEEeecc-cchhhhcchhHHHHHHHhh----------------
Confidence            45689999999  8999999999999999999999999999984 8999999999999753211                


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                  .....++.++|.+++.++.+++++.++++.|.+++++++||+|++|+++|+||+.|
T Consensus        63 ------------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~D  118 (127)
T d2ef7a1          63 ------------KSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRD  118 (127)
T ss_dssp             ------------CCTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             ------------ccccchhhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHH
Confidence                        12346789999999999999999999999999999999999998999999999886

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=3e-21  Score=142.58  Aligned_cols=122  Identities=16%  Similarity=0.169  Sum_probs=103.9

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      .+|+++|.+.++++++.+++++++|++.|.+++++++||+|++|+++|++|..|+++.........              
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~--------------   67 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIE--------------   67 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBC--------------
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccccc--------------
Confidence            478999988778999999999999999999999999999998899999999999997643221100              


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                              .......++.++|.++++++.+++++.+++++|.+++  .+||+|++|+++|+||++|
T Consensus        68 --------~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~d  123 (132)
T d1yava3          68 --------FEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRV  123 (132)
T ss_dssp             --------GGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHH
T ss_pred             --------ccccccccccccccccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHH
Confidence                    0122356889999999999999999999999998764  5999999999999999876

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=5.3e-21  Score=143.44  Aligned_cols=110  Identities=32%  Similarity=0.437  Sum_probs=100.6

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCC-----CCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~-----~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (237)
                      +++.+|++  +++++++++|+.+|++.|++++     +..+||+|++|+++|+++.+|+...                  
T Consensus         2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~------------------   61 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------------------   61 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTS------------------
T ss_pred             CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhc------------------
Confidence            57889999  8999999999999999998764     6789999999999999999999853                  


Q ss_pred             cchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                     ....++.++|.+++.++.+++++.+|++.|.+++++++||||++|+++|+||++|
T Consensus        62 ---------------~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~D  116 (144)
T d2yvxa2          62 ---------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDD  116 (144)
T ss_dssp             ---------------CTTCBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHH
T ss_pred             ---------------ccccchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHH
Confidence                           1246899999999999999999999999999999999999998899999999876

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.82  E-value=1.2e-20  Score=140.67  Aligned_cols=123  Identities=22%  Similarity=0.309  Sum_probs=105.6

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      ++|+++|++  ++.++++++|+.+|++.|.+++++++||+|+++++.|+++..|+.+.......                
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~----------------   63 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVD----------------   63 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHH----------------
T ss_pred             EeeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhcccc----------------
Confidence            488999999  89999999999999999999999999999999999999999999875321100                


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                           ..........+++++|.++++++.+++++.++++.|.+++++++||+|++|+++|+||++|
T Consensus        64 -----~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~D  124 (141)
T d3ddja1          64 -----KLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERD  124 (141)
T ss_dssp             -----HTCTHHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             -----ccccccccCCCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHH
Confidence                 0000012357899999999999999999999999999999999999998999999999876

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.82  E-value=3.4e-20  Score=134.66  Aligned_cols=114  Identities=20%  Similarity=0.247  Sum_probs=100.6

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (237)
                      +|+++|++  +++++++++|+.+|++.|.+++++.+||++ +|+++|++|.+||++.+..+.                  
T Consensus         1 kV~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~------------------   59 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD------------------   59 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC------------------
T ss_pred             ChHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeeccccccccc------------------
Confidence            47899999  899999999999999999999999999998 489999999999997532211                  


Q ss_pred             HHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                               ...+.++.++|.++++++++++++.+|++.|.+++.+.+||++ +|+++|+||++|
T Consensus        60 ---------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~D  114 (120)
T d1pbja3          60 ---------DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATD  114 (120)
T ss_dssp             ---------CTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             ---------cccceeEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHH
Confidence                     1224689999999999999999999999999999999999987 799999999876

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.82  E-value=4.7e-20  Score=135.24  Aligned_cols=117  Identities=25%  Similarity=0.345  Sum_probs=100.9

Q ss_pred             ccccccccc-CceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        84 ~v~~im~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      +|+++|..+ .+++++++++++.+|++.|.+++++.+||++ +|+++|++|.+|+++.....+.                
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~----------------   65 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK----------------   65 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS----------------
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcc----------------
Confidence            688888742 3789999999999999999999999999998 6899999999999864322211                


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                .....+++++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||.+|
T Consensus        66 ----------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~D  120 (127)
T d2rc3a1          66 ----------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGD  120 (127)
T ss_dssp             ----------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             ----------cccceeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHH
Confidence                      1124679999999999999999999999999999999999998 699999999876

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.81  E-value=1.7e-19  Score=133.30  Aligned_cols=125  Identities=22%  Similarity=0.259  Sum_probs=103.8

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      ++|+++|.+  +++++++++++.+|++.|.+++++++||+|+  +++|+++..++.++.........             
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~~~~~~~~-------------   63 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVESYCKDSC-------------   63 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGTTCC---C-------------
T ss_pred             CEeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhhccccccch-------------
Confidence            478999999  8999999999999999999999999999974  79999999999976432211000             


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                       .   ..........+++++|.+++.++++++++.+|+++|.+++++.+||+|++|+++|+||++|
T Consensus        64 -~---~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~D  125 (135)
T d3ddja2          64 -S---QGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTERE  125 (135)
T ss_dssp             -C---HHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             -h---hhhccccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHH
Confidence             0   0011122357899999999999999999999999999999999999999999999999886

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.80  E-value=4.6e-19  Score=134.23  Aligned_cols=144  Identities=18%  Similarity=0.161  Sum_probs=108.5

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC--CCcEEEEEehHhHhhhccccCCCCCCCCccccc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  157 (237)
                      ..+++|+++|++  +++++++++++.++++.|.+++++.+||+|+  ++.++|+++..|+++++.......... .. ..
T Consensus         8 ~~~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~-~~-~~   83 (160)
T d2d4za3           8 KYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQ-PF-EE   83 (160)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSS-CC-CS
T ss_pred             ccceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhcccccccc-ch-hh
Confidence            357799999998  8999999999999999999999999999984  478999999999987654321111100 00 00


Q ss_pred             ccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      .....................+.++|.+.+.++.+++++.+++++|.+.+++++||++ +|+++|+||++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~D  153 (160)
T d2d4za3          84 MLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAE  153 (160)
T ss_dssp             CCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             ccccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHH
Confidence            0011111111112222334567889999999999999999999999999999999998 699999999987

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.79  E-value=3.5e-19  Score=130.28  Aligned_cols=103  Identities=26%  Similarity=0.427  Sum_probs=89.5

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC--CCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLL  171 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      +++++++++++.+|+++|.+++++.+||+|+  +|+++|+||.+|+.+...                             
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~-----------------------------   56 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD-----------------------------   56 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC-----------------------------
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhc-----------------------------
Confidence            5789999999999999999999999999996  689999999999986421                             


Q ss_pred             HhhcCCc-cccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          172 SKTNGKM-VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       172 ~~~~~~~-v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                         .+.+ ...+|..++.++.+++++.+|+++|.+++++++||||++|+++|+||++|
T Consensus        57 ---~~~~~~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~D  111 (126)
T d1zfja4          57 ---YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKD  111 (126)
T ss_dssp             ---SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHH
T ss_pred             ---cCCceeeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHH
Confidence               1222 33455667788999999999999999999999999998999999999876

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.79  E-value=4.3e-19  Score=130.49  Aligned_cols=115  Identities=17%  Similarity=0.168  Sum_probs=98.0

Q ss_pred             ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEE--cCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (237)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      ++|+++|++  +++++++++++.+|++.|.+++.+++||+  |++++++|+++..|+.+....                 
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~-----------------   61 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ-----------------   61 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT-----------------
T ss_pred             CCHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccc-----------------
Confidence            478999998  89999999999999999999999999999  455889999999999974321                 


Q ss_pred             hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                  ..........+..+++++.+++++.+|+++|.+++++.+||+|++|+++|+||+.|
T Consensus        62 ------------~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~D  117 (131)
T d2riha1          62 ------------RLDLDGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRD  117 (131)
T ss_dssp             ------------TCCTTSBSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             ------------ccccccccccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHH
Confidence                        11122333445567789999999999999999999999999999999999999876

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=7.3e-19  Score=131.36  Aligned_cols=130  Identities=23%  Similarity=0.353  Sum_probs=99.4

Q ss_pred             cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhh
Q 026495           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (237)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (237)
                      .+.++|..  .++++++++++.+|++.|.+++++.+||+|++|+++|+||..||.++..............         
T Consensus         5 ~v~~~m~~--~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~---------   73 (145)
T d1o50a3           5 DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEEL---------   73 (145)
T ss_dssp             HHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------------
T ss_pred             EhHHhCCC--CCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHH---------
Confidence            56678888  7999999999999999999999999999998899999999999987543221110000000         


Q ss_pred             HHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                         ...........+++++| .++.++.+++++.+|++.|.+++.+.+||||++|+++|+||.+|
T Consensus        74 ---~~~~~~~~~~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~d  134 (145)
T d1o50a3          74 ---IRSSMKRLIAKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLE  134 (145)
T ss_dssp             ------CCCCCSSCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             ---HHhhhhhccccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHH
Confidence               00000012234566666 45678999999999999999999999999998999999999876

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.75  E-value=5e-18  Score=128.10  Aligned_cols=119  Identities=18%  Similarity=0.191  Sum_probs=95.8

Q ss_pred             cccccccc-cCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           84 TVGDFMTT-KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        84 ~v~~im~~-~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      ++++++.. ..+++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+.++......                
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~----------------   65 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDY----------------   65 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCG----------------
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccc----------------
Confidence            45555532 2378999999999999999999999999999988999999999999875432211                


Q ss_pred             hHHHHHHHHHhhcCCccccc------cccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDL------MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~i------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                                .....++.++      +..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus        66 ----------~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~D  127 (153)
T d2ooxe2          66 ----------SNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLAD  127 (153)
T ss_dssp             ----------GGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHH
T ss_pred             ----------cccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHH
Confidence                      0012233333      3456678999999999999999999999999998999999999986

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=9.3e-18  Score=125.33  Aligned_cols=125  Identities=22%  Similarity=0.272  Sum_probs=97.6

Q ss_pred             cccccccc-cCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchh
Q 026495           84 TVGDFMTT-KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (237)
Q Consensus        84 ~v~~im~~-~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
                      ++++++.. ..+++++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++.+..........           
T Consensus        10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~-----------   78 (145)
T d2v8qe1          10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDV-----------   78 (145)
T ss_dssp             BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSS-----------
T ss_pred             CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhh-----------
Confidence            45555431 126899999999999999999999999999999999999999999987654322111000           


Q ss_pred             hHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ...         ........|..++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+|
T Consensus        79 ~v~---------~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~d  135 (145)
T d2v8qe1          79 SVT---------KALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSD  135 (145)
T ss_dssp             BHH---------HHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             hhh---------hccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHH
Confidence            000         012234456677889999999999999999999999999998999999999876

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=6.1e-18  Score=125.68  Aligned_cols=119  Identities=18%  Similarity=0.188  Sum_probs=89.8

Q ss_pred             cccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHH
Q 026495           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV  167 (237)
Q Consensus        88 im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (237)
                      +|..  ++.++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+.++..........           ...   
T Consensus        14 ~~~~--~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~-----------~~~---   77 (140)
T d2nyca1          14 ITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLS-----------LSV---   77 (140)
T ss_dssp             CBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CC-----------SBH---
T ss_pred             ccCC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccc-----------cch---
Confidence            3555  799999999999999999999999999999999999999999999865322211100           000   


Q ss_pred             HHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          168 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       168 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                      ...      ......+..++.++++++++.++++.|.+++++.+||||++|+++|+||++|
T Consensus        78 ~~~------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~D  132 (140)
T d2nyca1          78 GEA------LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSD  132 (140)
T ss_dssp             HHH------HHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             hhh------hhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHH
Confidence            000      0112234456788999999999999999999999999999999999999976

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=4.3e-18  Score=129.02  Aligned_cols=136  Identities=20%  Similarity=0.193  Sum_probs=101.3

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC-CCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      ...++.|+|.+..++++++.++++.+|++.|.+++++.+||+|+ +++++|+++..|++.................... 
T Consensus        11 ~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~-   89 (159)
T d2v8qe2          11 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEH-   89 (159)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGC-
T ss_pred             cCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhh-
Confidence            45689999976557899999999999999999999999999975 5889999999999875422110000000000000 


Q ss_pred             chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEccc
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGWNYHKRKCSK  228 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~iGvIt~~d  228 (237)
                         .   .     ........++|.++++++++++++.+++++|.+++.+++||+|+ +|+++|+||.+|
T Consensus        90 ---~---~-----~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~d  148 (159)
T d2v8qe2          90 ---K---I-----ETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKR  148 (159)
T ss_dssp             ---B---H-----HHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHH
T ss_pred             ---h---c-----ccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHH
Confidence               0   0     00012345678888899999999999999999999999999984 689999999876

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.6e-17  Score=123.39  Aligned_cols=137  Identities=19%  Similarity=0.241  Sum_probs=100.0

Q ss_pred             ccccccccccCce----eEEcCCCCHHHHHHHHHHCCCCeEEEE--cCCCcEEEEEehHhHhhhccccCCCCCC---CC-
Q 026495           83 YTVGDFMTTKEEL----HVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGRAD---NS-  152 (237)
Q Consensus        83 ~~v~~im~~~~~~----~~v~~~~~l~~~~~~~~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~---~~-  152 (237)
                      ..++|+|.+.+..    +.+.++.|+.++.++|.+++++.+||+  +++++++|++|.+||+.++.........   .. 
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~   82 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSI   82 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCE
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchh
Confidence            4678899874322    445778899999999999999999999  4568899999999999765422111100   00 


Q ss_pred             -cccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          153 -MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       153 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                       .+.......        ........++.++|.+++.++.+++++.+++++|.+++.+.+||++ +|+++|+||++|
T Consensus        83 ~~~~~~~~~~--------~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~D  150 (169)
T d2j9la1          83 IYFTEHSPPL--------PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKD  150 (169)
T ss_dssp             EECSSSCCCC--------CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             hhhcccchhh--------hhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHH
Confidence             000000000        0001224568999999999999999999999999999999999987 799999999987

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.68  E-value=5.3e-19  Score=128.27  Aligned_cols=105  Identities=22%  Similarity=0.371  Sum_probs=54.7

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC---CCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHH
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  170 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      +++++++++++.+|+++|.+++++++||+|+   +|+++|+||.+|+.....                            
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~----------------------------   56 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKE----------------------------   56 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC-----------------------------------------
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhc----------------------------
Confidence            5778999999999999999999999999985   579999999999864211                            


Q ss_pred             HHhhcCCcccccc--ccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495          171 LSKTNGKMVGDLM--TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK  228 (237)
Q Consensus       171 ~~~~~~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d  228 (237)
                        ...+.++.++|  .+++.++.+++++.+|+++|.+++++++||+|++|+++|+||++|
T Consensus        57 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~D  114 (120)
T d1jr1a4          57 --EEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTD  114 (120)
T ss_dssp             -----------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHH
T ss_pred             --cccCceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHH
Confidence              11123444554  446788999999999999999999999999998999999999886

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.66  E-value=5.1e-17  Score=125.32  Aligned_cols=140  Identities=21%  Similarity=0.219  Sum_probs=100.9

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC-CCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      ...++.|+|.+..++++++++.++.+|+..|.+++++++||+|. +++++|++|..|+++++................. 
T Consensus        18 ~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~-   96 (179)
T d2ooxe1          18 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEID-   96 (179)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGG-
T ss_pred             cCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhh-
Confidence            45578899976447999999999999999999999999999985 5899999999999875422110000000000000 


Q ss_pred             chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCC-----cEEEEEEccc
Q 026495          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG-----WNYHKRKCSK  228 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-----~~iGvIt~~d  228 (237)
                       ........      .......+|.++++++.+++++.+|++.|.+++++++||+|++|     +++|+||++|
T Consensus        97 -~~~~~~~~------~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~d  163 (179)
T d2ooxe1          97 -KFRLLGLR------EVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYR  163 (179)
T ss_dssp             -GSBHHHHH------HHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHH
T ss_pred             -ccchhhhc------ccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHH
Confidence             00000000      01234456888889999999999999999999999999998643     6999999876

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.10  E-value=4e-10  Score=80.52  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=82.9

Q ss_pred             hhhhccCCEEEEecCccchhHHH-hccCCCceEEecCCceeeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHH
Q 026495           27 TSFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (237)
Q Consensus        27 ~ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~  105 (237)
                      ..+.+.++++-.+.+..+..+.+ ......+++..+...-.+.......  .......++.++|..  +++++++++++.
T Consensus         5 ~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl--~~~~~~~~v~~~~~~--~~~~v~~~~~l~   80 (121)
T d1vr9a3           5 KWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDL--LDLDLDSSVFNKVSL--PDFFVHEEDNIT   80 (121)
T ss_dssp             GGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGG--TTSCTTSBSGGGCBC--TTCCEETTSBHH
T ss_pred             hhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhh--hhhhccccccccccC--ccEEECCCCCHH
Confidence            45667788777666666777777 6666677887533222222222222  223345689999998  788999999999


Q ss_pred             HHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       106 ~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ++++.|.+++...+||+|++|+++|+||..|++++
T Consensus        81 ~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~  115 (121)
T d1vr9a3          81 HALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEA  115 (121)
T ss_dssp             HHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             HHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHH
Confidence            99999999999999999999999999999999975

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.09  E-value=1.8e-10  Score=83.25  Aligned_cols=60  Identities=17%  Similarity=0.290  Sum_probs=55.7

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      .....+++++|.+  ++.++++++++.+|++.|.+++++++||+|++|+++|+||.+||+++
T Consensus        61 ~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~  120 (127)
T d2ouxa2          61 NDDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDV  120 (127)
T ss_dssp             SCTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             ccccEEhhhhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHH
Confidence            3456789999998  89999999999999999999999999999999999999999999975

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.07  E-value=2.3e-10  Score=82.54  Aligned_cols=112  Identities=18%  Similarity=0.208  Sum_probs=82.2

Q ss_pred             hhhhccCCEEEEecCccchhHHH-hccCCCceEEecCCce-eeeehhhhc-ccCCCCCcccccccccccCceeEEcCCCC
Q 026495           27 TSFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV-FASGTLTAN-SAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (237)
Q Consensus        27 ~ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~-~~~~~~~~~-~~~~~~~~~~v~~im~~~~~~~~v~~~~~  103 (237)
                      ..+.+.+.++....+...+.+.+ ......+|+..+...- ..+...+.. .........+++++|.+  ++.+++++++
T Consensus         8 d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~   85 (127)
T d2ef7a1           8 EYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEEFMTA--SLITIREDSP   85 (127)
T ss_dssp             GTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE--CCCCEETTSB
T ss_pred             HhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHHhhccccchhhhhhhh--hccccccccc
Confidence            34556666655555455555556 6677788888744322 222222321 12234456789999998  8999999999


Q ss_pred             HHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       104 l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +.++.+.|.+++.+++||+|++|+++|+||..||+++
T Consensus        86 l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~  122 (127)
T d2ef7a1          86 ITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRA  122 (127)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             hhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHH
Confidence            9999999999999999999999999999999999975

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.07  E-value=6.8e-10  Score=81.56  Aligned_cols=114  Identities=13%  Similarity=0.106  Sum_probs=85.9

Q ss_pred             hhhhhccCCEEEEecCccchhHHH-hccCCCceEEecCCce--eeeehhh-hc--ccCCCCCcccccccccccCceeEEc
Q 026495           26 RTSFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV--FASGTLT-AN--SAAPSSGVYTVGDFMTTKEELHVVK   99 (237)
Q Consensus        26 ~~ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~--~~~~~~~-~~--~~~~~~~~~~v~~im~~~~~~~~v~   99 (237)
                      ...+...++++-.+.+..++.+.+ +.....+++..+....  ....+.+ ..  +........+++++|.+  ++++++
T Consensus         6 ~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~--~~~~v~   83 (142)
T d1pvma4           6 EKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVK   83 (142)
T ss_dssp             GGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEE
T ss_pred             HHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccccccccccccccc--cccccc
Confidence            455677777777666666666666 6666778888644222  2222222 11  22344567789999998  899999


Q ss_pred             CCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       100 ~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      +++++.++++.|.+++.+++||+|++|+++|+||..||++.+
T Consensus        84 ~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          84 SDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             TTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             chhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHH
Confidence            999999999999999999999999999999999999999753

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=3.5e-10  Score=80.99  Aligned_cols=107  Identities=12%  Similarity=0.155  Sum_probs=63.0

Q ss_pred             hccCCEEEEecCccchhHHH-hccCCCceEEecCCceeeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHH
Q 026495           30 ALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL  108 (237)
Q Consensus        30 ~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~  108 (237)
                      ...+.++-...+...+.+.+ ....+.+|+..+...-.+.......  ........++++|.+  +++++++++++.+++
T Consensus         8 ~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl--~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~   83 (122)
T d2yzqa2           8 TQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRI--LVNPDEEQLAMLVKR--DVPVVKENDTLKKAA   83 (122)
T ss_dssp             EESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC------------CCCBS--CCCEEETTSBHHHHH
T ss_pred             CCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchh--hhhhcccchhhcccc--ceeecchhhHHHHHH
Confidence            33444444444444444444 4455666776533211211111111  223455688999998  899999999999999


Q ss_pred             HHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       109 ~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ..|.+++.+.+||+|++|+++|+||..|+++.
T Consensus        84 ~~~~~~~~~~lpVvd~~~~liGiit~~dil~~  115 (122)
T d2yzqa2          84 KLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR  115 (122)
T ss_dssp             HHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             HHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHH
Confidence            99999999999999999999999999999964

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.04  E-value=5e-10  Score=81.36  Aligned_cols=59  Identities=29%  Similarity=0.397  Sum_probs=55.2

Q ss_pred             CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ...+++++|.+  ++.++++++++.+|+++|.+++.+++||+|++|+++|+||.+|+++++
T Consensus        72 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~  130 (135)
T d3ddja2          72 STTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY  130 (135)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGG
T ss_pred             ccCCHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            45689999999  899999999999999999999999999999999999999999999864

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.01  E-value=6.9e-10  Score=82.55  Aligned_cols=60  Identities=32%  Similarity=0.491  Sum_probs=54.8

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      .....+++++|.+  ++.++.+++++.++.+.|.+++++++||+|++|+++|+||.+||+++
T Consensus        95 ~~~~~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          95 QLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             --CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             cccCCEeehhccc--CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence            3566789999998  89999999999999999999999999999999999999999999975

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=9.5e-10  Score=78.72  Aligned_cols=112  Identities=15%  Similarity=0.259  Sum_probs=80.0

Q ss_pred             hhhhhccCCEEEEecCccchhHHH-hccCCCceEEecCCce--eeeehhh-h--cccCCCCCcccccccccccCceeEEc
Q 026495           26 RTSFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV--FASGTLT-A--NSAAPSSGVYTVGDFMTTKEELHVVK   99 (237)
Q Consensus        26 ~~ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~--~~~~~~~-~--~~~~~~~~~~~v~~im~~~~~~~~v~   99 (237)
                      ...+...+.++--..+..++.+.+ ......+|+..+...-  ....+.+ .  ...........++++|.+  ++.+++
T Consensus         4 ~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~   81 (123)
T d1y5ha3           4 RDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD--SIYYVD   81 (123)
T ss_dssp             HHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CCCCEE
T ss_pred             HHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeec--cceeee
Confidence            345566666655555455555556 6666778887533222  2222222 1  122334556788999998  899999


Q ss_pred             CCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       100 ~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +++++.++++.|.+++.+++||+| +|+++|+||..||++.
T Consensus        82 ~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          82 ANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             TTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             ecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence            999999999999999999999999 5899999999999974

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.97  E-value=1.2e-09  Score=77.78  Aligned_cols=111  Identities=15%  Similarity=0.191  Sum_probs=81.3

Q ss_pred             hhhhccCCEEEEecCccchhHHH-hccCCCceEEecCCce-eeeehhhh--cccCCCCCcccccccccccCceeEEcCCC
Q 026495           27 TSFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV-FASGTLTA--NSAAPSSGVYTVGDFMTTKEELHVVKPTT  102 (237)
Q Consensus        27 ~ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~-~~~~~~~~--~~~~~~~~~~~v~~im~~~~~~~~v~~~~  102 (237)
                      ..+.+.+.++..+.+..++.+.+ ......+++..+...- ....+.+.  ..........+++++|.+  +++++++++
T Consensus         4 diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~--~~~~v~~~~   81 (120)
T d1pbja3           4 DVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMER--DLVTISPRA   81 (120)
T ss_dssp             HHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBC--GGGEECTTS
T ss_pred             HhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeeccccccccccccceeEeeeccc--ccccccchh
Confidence            34566677766666566666666 5566666776643222 22222222  122445667899999998  899999999


Q ss_pred             CHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       103 ~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ++.+|+..|.+++.+++||++ +|+++|++|..|++++
T Consensus        82 ~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          82 TIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             CHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             HHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence            999999999999999999987 6899999999999974

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=2e-09  Score=79.28  Aligned_cols=60  Identities=25%  Similarity=0.447  Sum_probs=55.6

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      .....+++++|.+  +++++++++++.+|++.|.+++++++||+|++|+++|+||.+||+++
T Consensus        61 ~~~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~  120 (144)
T d2yvxa2          61 ADPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDV  120 (144)
T ss_dssp             SCTTCBSTTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHH
T ss_pred             cccccchHHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHH
Confidence            3456789999999  89999999999999999999999999999999999999999999975

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.93  E-value=1.6e-09  Score=78.01  Aligned_cols=96  Identities=20%  Similarity=0.254  Sum_probs=71.9

Q ss_pred             ccchhHHH-hccCCCceEEecCCce-eeeehhhh---cccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCC
Q 026495           42 GCRVFSVL-ATSSDRVSALRRSSAV-FASGTLTA---NSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRI  116 (237)
Q Consensus        42 ~~~v~~~~-~~~~~~v~v~~~sp~~-~~~~~~~~---~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~  116 (237)
                      ..++.+.+ +.....+|+..+...- ..+.+.+.   ..........+++++|.+  ++.++.+++++.++++.|.+++.
T Consensus        24 l~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~  101 (127)
T d2rc3a1          24 VFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRV  101 (127)
T ss_dssp             HHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhhcccccceeEeeeccc--eeEEeccCccHHHHHHHHHHCCC
Confidence            33444444 5666788887754333 33333222   122334567889999998  89999999999999999999999


Q ss_pred             CeEEEEcCCCcEEEEEehHhHhhh
Q 026495          117 TGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       117 ~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +++||+| +|+++|+||..|+++.
T Consensus       102 ~~lpVvd-~~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1         102 RHLPVLD-DGKVIGLLSIGDLVKD  124 (127)
T ss_dssp             SEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             cEEEEEE-CCEEEEEEEHHHHHHH
Confidence            9999998 6999999999999974

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.88  E-value=1.3e-09  Score=79.66  Aligned_cols=112  Identities=15%  Similarity=0.194  Sum_probs=80.3

Q ss_pred             hhhhccCCEEEEecCccchhHHH-hccCCCceEEecCCce--eeeehhhhc--------ccCCCCCcccccccccccCce
Q 026495           27 TSFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV--FASGTLTAN--------SAAPSSGVYTVGDFMTTKEEL   95 (237)
Q Consensus        27 ~ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~--~~~~~~~~~--------~~~~~~~~~~v~~im~~~~~~   95 (237)
                      ..+..++.++--..+...+.+.+ ......+|+..+....  ......+..        .........+++++|.+  ++
T Consensus         6 ~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im~~--~~   83 (141)
T d3ddja1           6 VFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVT--NL   83 (141)
T ss_dssp             HHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBC--CC
T ss_pred             HhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHHhCc--cc
Confidence            34555666665555555556666 6677788887644322  212111110        00112346689999998  89


Q ss_pred             eEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        96 ~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +++.+++++.++++.|.+++.+++||+|++|+++|+||.+|+++.
T Consensus        84 ~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~  128 (141)
T d3ddja1          84 VTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA  128 (141)
T ss_dssp             CBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHH
Confidence            999999999999999999999999999999999999999999975

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.84  E-value=7.9e-09  Score=74.08  Aligned_cols=88  Identities=17%  Similarity=0.158  Sum_probs=62.3

Q ss_pred             hccCCCceEEecC----CceeeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC
Q 026495           50 ATSSDRVSALRRS----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD  125 (237)
Q Consensus        50 ~~~~~~v~v~~~s----p~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~  125 (237)
                      ....+++|+..+.    +....+.+.+..  ...........+|..  +++++++++++.+|+++|.+++++++||+|++
T Consensus        25 ~~~~~~~pVvD~~~~~~lvGivt~~Di~~--~~~~~~~~~~~~~~~--~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~  100 (126)
T d1zfja4          25 RYRISGVPIVETLANRKLVGIITNRDMRF--ISDYNAPISEHMTSE--HLVTAAVGTDLETAERILHEHRIEKLPLVDNS  100 (126)
T ss_dssp             HTTCSEEEEESCTTTCBEEEEEEHHHHHH--CSCSSSBTTTSCCCS--CCCCEETTCCHHHHHHHHHHTTCSEEEEECTT
T ss_pred             HhCCCcEEEEeeccCCeEEEEeEHHHHHH--hhccCCceeeeeecc--ceeecCCCCCHHHHHHHHHhcCCcEEEEEcCC
Confidence            4556677777531    112333333332  222233334445555  68889999999999999999999999999999


Q ss_pred             CcEEEEEehHhHhhhc
Q 026495          126 WKLVGLVSDYDLLALD  141 (237)
Q Consensus       126 ~~~~Givt~~dl~~~~  141 (237)
                      |+++|+||..||+++.
T Consensus       101 g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4         101 GRLSGLITIKDIEKVI  116 (126)
T ss_dssp             SBEEEEEEHHHHHHHH
T ss_pred             CeEEEEEEHHHHHHHh
Confidence            9999999999999753

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.83  E-value=4.3e-09  Score=76.78  Aligned_cols=58  Identities=22%  Similarity=0.381  Sum_probs=53.1

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ....+++++|.+  +++++++++++.+++.+|.+++.+++||+| +|+++|+||..||+++
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  129 (139)
T d2o16a3          72 AFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTI  129 (139)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHH
T ss_pred             ccccchhHhhcc--ccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHH
Confidence            446689999998  899999999999999999999999999999 4899999999999975

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.81  E-value=1.5e-08  Score=73.21  Aligned_cols=112  Identities=18%  Similarity=0.163  Sum_probs=78.7

Q ss_pred             hhhhccCCEEEEecCccchhHHH-hccCCCceEEecCCce--eeeehhhhc--ccCCCCCcccccccccccCceeEEcCC
Q 026495           27 TSFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV--FASGTLTAN--SAAPSSGVYTVGDFMTTKEELHVVKPT  101 (237)
Q Consensus        27 ~ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~--~~~~~~~~~--~~~~~~~~~~v~~im~~~~~~~~v~~~  101 (237)
                      ..+...+.++-...+..++.+.+ ......+++..+....  ......+..  .........+++++|.+  ++.++.++
T Consensus         9 ~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~--~~~~v~~~   86 (132)
T d2yzia1           9 VYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTR--NLITANVN   86 (132)
T ss_dssp             GTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBC--SCCEEETT
T ss_pred             HHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCccceeEeecccc--cccccCcc
Confidence            34555555554444445555555 5666777887644222  222222221  12234457789999998  89999999


Q ss_pred             CCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       102 ~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      +++.++++.|.+++.+++||++ +|+++|+||..|+++++
T Consensus        87 ~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~  125 (132)
T d2yzia1          87 TPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEAS  125 (132)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            9999999999999999999876 68999999999999753

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.77  E-value=9.5e-09  Score=73.98  Aligned_cols=111  Identities=17%  Similarity=0.039  Sum_probs=69.3

Q ss_pred             hhhccCCEEEEecCccchhHHH-hccCCCceEEecCC----ceeeeehhhhcccCCCCCcccccccccccCceeEEcCCC
Q 026495           28 SFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT  102 (237)
Q Consensus        28 ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~  102 (237)
                      .+.+...++-...+..++.+.+ ......+++.....    ........+................|..  +.+++.+++
T Consensus         6 im~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~--~~~~v~~~~   83 (131)
T d2riha1           6 LLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIAN--SPITVLDTD   83 (131)
T ss_dssp             GCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCB--CCCEEETTS
T ss_pred             hccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccccccccccc--cceeEeeec
Confidence            3444444433333344444555 55556667764221    1111112222111122222233344555  588999999


Q ss_pred             CHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       103 ~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ++.+++++|.+++.+++||+|++|+++|+||..||++.
T Consensus        84 ~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          84 PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             chHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence            99999999999999999999999999999999999974

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.77  E-value=5.5e-09  Score=75.47  Aligned_cols=107  Identities=15%  Similarity=0.144  Sum_probs=74.9

Q ss_pred             hccCCEEEEecCccchhHHH-hccCCCceEEecCCce--eeeehhhhccc-------CCCCCcccccccccccCceeEEc
Q 026495           30 ALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV--FASGTLTANSA-------APSSGVYTVGDFMTTKEELHVVK   99 (237)
Q Consensus        30 ~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~--~~~~~~~~~~~-------~~~~~~~~v~~im~~~~~~~~v~   99 (237)
                      ...+.++-...+.....+.+ +...+++|+..++..-  ....+.+....       .......+++++|.+  ++++++
T Consensus        11 ~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~   88 (132)
T d1yava3          11 ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLT--DIPRLH   88 (132)
T ss_dssp             GGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBC--SCCEEE
T ss_pred             ccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccccccccccccccccccccc--cccccc
Confidence            34455555555555556666 6777888887643211  22222221110       123456789999998  899999


Q ss_pred             CCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495          100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus       100 ~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      +++++.+++..|.+++  .+||+|++|+++|+||.+|++++
T Consensus        89 ~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~  127 (132)
T d1yava3          89 INDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKE  127 (132)
T ss_dssp             TTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHH
T ss_pred             cchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHH
Confidence            9999999999997654  59999999999999999999975

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=3.9e-08  Score=71.91  Aligned_cols=108  Identities=15%  Similarity=0.095  Sum_probs=70.0

Q ss_pred             CCEEEEecCccchhHHH-hccCCCceEEecCCc--eeeeehhhhcccC---CCCCcc------cccccccccCceeEEcC
Q 026495           33 LPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSA--VFASGTLTANSAA---PSSGVY------TVGDFMTTKEELHVVKP  100 (237)
Q Consensus        33 v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~--~~~~~~~~~~~~~---~~~~~~------~v~~im~~~~~~~~v~~  100 (237)
                      +.++-...+..++.+.+ ....+.+++..+...  .......+.....   ......      .+...|.+  ++.++.+
T Consensus        22 v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~~~~--~~~~v~~   99 (145)
T d2v8qe1          22 IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--GVLKCYL   99 (145)
T ss_dssp             CCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC--SCCEECT
T ss_pred             ceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhccchhhhccC--CCeEECC
Confidence            33333333344444455 566667777764321  2222222221111   111222      33444555  7889999


Q ss_pred             CCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhcc
Q 026495          101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (237)
Q Consensus       101 ~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~  142 (237)
                      ++++.++++.|.+++.+++||+|++|+++|+||.+||++++.
T Consensus       100 ~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1         100 HETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence            999999999999999999999999999999999999998643

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.65  E-value=4.3e-08  Score=72.49  Aligned_cols=112  Identities=12%  Similarity=0.015  Sum_probs=77.1

Q ss_pred             hhhhhccCCEEEEecCccchhHHH-hccCCCceEEecCCce--ee--eehhhhcc-------------------------
Q 026495           26 RTSFALQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV--FA--SGTLTANS-------------------------   75 (237)
Q Consensus        26 ~~ai~~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~--~~--~~~~~~~~-------------------------   75 (237)
                      ...+.+.+.++-...+..++.+.+ +.....+|+..+....  ..  ....+...                         
T Consensus        14 ~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~   93 (160)
T d2d4za3          14 GDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRW   93 (160)
T ss_dssp             TSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHHHHH
T ss_pred             HHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccccchhhhh
Confidence            345666666666555555566666 6777788887633211  11  11111000                         


Q ss_pred             --cCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           76 --AAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        76 --~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                        .........++++|.+  .+.++.+++++.+++.+|.+.+.+++||+| +|+++|+||.+||+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~  157 (160)
T d2d4za3          94 EQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAA  157 (160)
T ss_dssp             HHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             hhhhcccccceeeecccC--CCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHH
Confidence              0112234456778988  799999999999999999999999999998 5999999999999975

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.64  E-value=4e-08  Score=71.72  Aligned_cols=60  Identities=22%  Similarity=0.362  Sum_probs=52.8

Q ss_pred             CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      .....+++++|..   ++++.+++++.+|+..|.+++.+++||+|++|+++|+||..||++++
T Consensus        80 ~~~~~~~~~~~~~---~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l  139 (145)
T d1o50a3          80 RLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLAL  139 (145)
T ss_dssp             CCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             hccccCHHHHcCC---CEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            3455667777765   67899999999999999999999999999999999999999999864

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.63  E-value=9e-09  Score=73.21  Aligned_cols=59  Identities=27%  Similarity=0.390  Sum_probs=44.9

Q ss_pred             cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ..++.++|....++.+++++.++.+|+++|.+++++++||+|++|+++|+||..||++.
T Consensus        60 ~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          60 DRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             ------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             CceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            44566666544478899999999999999999999999999999999999999999863

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.47  E-value=1.5e-07  Score=69.35  Aligned_cols=98  Identities=18%  Similarity=0.261  Sum_probs=65.6

Q ss_pred             chhHHH-hccCCCceEEecCCc--eeeeehhhh-cc--cCCCCCccccccccccc----CceeEEcCCCCHHHHHHHHHH
Q 026495           44 RVFSVL-ATSSDRVSALRRSSA--VFASGTLTA-NS--AAPSSGVYTVGDFMTTK----EELHVVKPTTTVDEALEILVE  113 (237)
Q Consensus        44 ~v~~~~-~~~~~~v~v~~~sp~--~~~~~~~~~-~~--~~~~~~~~~v~~im~~~----~~~~~v~~~~~l~~~~~~~~~  113 (237)
                      ++.+.+ ......+|+..+...  .....+.+. ..  ........++.++|...    ..+.++.+++++.++++.|.+
T Consensus        25 ~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~  104 (153)
T d2ooxe2          25 DVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKH  104 (153)
T ss_dssp             HHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHH
T ss_pred             HHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhh
Confidence            334444 566667777753321  222222222 11  11122345666666431    156789999999999999999


Q ss_pred             CCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495          114 KRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus       114 ~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ++.+++||+|++|+++|+||..|+++++
T Consensus       105 ~~~~~l~Vvd~~~~lvGivT~~Dil~~~  132 (153)
T d2ooxe2         105 SRVHRLFVVDENLKLEGILSLADILNYI  132 (153)
T ss_dssp             SCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             ceeeEEEEEcCCCEEEEEEEHHHHHHHH
Confidence            9999999999999999999999999854

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.4e-07  Score=70.65  Aligned_cols=59  Identities=14%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  141 (237)
                      ....+++++|.+  ++.++.+++++.+++++|.+++.+.+||+| +|+++|+||..|+++++
T Consensus        97 ~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l  155 (169)
T d2j9la1          97 PPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHI  155 (169)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            446678999998  899999999999999999999999999987 68999999999999753

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=1.1e-07  Score=70.39  Aligned_cols=55  Identities=18%  Similarity=0.276  Sum_probs=49.3

Q ss_pred             ccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEc-CCCcEEEEEehHhHhhhc
Q 026495           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALD  141 (237)
Q Consensus        85 v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~~~~  141 (237)
                      ..++|.+  +++++++++++.+++.+|.+++.+++||+| ++|+++|+||.+||++++
T Consensus        98 ~~~~~~~--~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          98 YLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             HSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             eeeeecc--ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence            3567777  789999999999999999999999999998 458999999999999864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=1.7e-07  Score=67.99  Aligned_cols=47  Identities=21%  Similarity=0.358  Sum_probs=43.4

Q ss_pred             ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (237)
Q Consensus        94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  140 (237)
                      ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|++++
T Consensus        90 ~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~  136 (140)
T d2nyca1          90 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKY  136 (140)
T ss_dssp             --CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             ccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHH
Confidence            67889999999999999999999999999999999999999999975

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.16  E-value=9.7e-07  Score=66.40  Aligned_cols=55  Identities=22%  Similarity=0.306  Sum_probs=48.2

Q ss_pred             ccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCC-----cEEEEEehHhHhhhc
Q 026495           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-----KLVGLVSDYDLLALD  141 (237)
Q Consensus        85 v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~-----~~~Givt~~dl~~~~  141 (237)
                      +..+|.+  +++++++++++.+++..|.+++.+++||+|++|     +++|++|.+||++++
T Consensus       109 ~~~~~~~--~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l  168 (179)
T d2ooxe1         109 KIGAIPP--ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFI  168 (179)
T ss_dssp             HTTCSCS--SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHH
T ss_pred             eeeeccc--CceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHH
Confidence            3445766  789999999999999999999999999998654     699999999999864