Citrus Sinensis ID: 026498

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSSDLRWL
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHccHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccEEEEEEccccccEEEEEcccccEEEEEcccccccEEEEcccHHHHHccccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccEEEcccccccccccEEEccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHcccccccHEEHEEEccccEccccccccccccEEEccEEEcccEEEEEEccHHHHHHHHHHHHHHccccccccEEEEEEEccccccEEEEEccccEEEEEEccccccccccccccHHHcccccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEEccccccccccEccccEEEEEHHHHHcc
Coil and Loop (DISEMBL)
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLkvklpvptrilyrfcdgqecqtddfesigamgliggySFYGHLVNVYLIPLSHIIMETKEIRrhldfpgrdKYVVVAFSSTysekffflnctngqlyvgtknllsdgemipcvPNALIAlghgcnsdqqQDGMLLWLEEHGRRLHNGIIRlrdeenlkfinlfpeepplcsiavtngvkvsyssdlrwl
Flexible Loop (DISEMBL)
mypwplvkrvkRCWDRLKNWLAENFPEAKATLRKGASEADIQQLekslkvklpvpTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPeepplcsiavtngvkvsyssdlrwl
Low Complexity Region (SEG)
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSSDLRWL
Disordered region (IsUnstruct)
**PWPLVKRVKRCWDRLKNWLAENFPEAKA*************LEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSY*******
Disordered Region (DISOPRED)
*YPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSSDLRWL
Disordered Region (DISEMBL)
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSSDLRWL
Disordered Region (DISPRO)
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSSDLRWL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSSDLRWL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q9LND7	436	F-box protein SKIP16 OS=A	yes	no	0.957	0.520	0.592	4e-74
Q6BW41	451	KNR4/SMI1 homolog 1 OS=De	yes	no	0.405	0.212	0.284	6e-07
Q6BJY4	590	KNR4/SMI1 homolog 2 OS=De	no	no	0.261	0.105	0.365	3e-05
Q6FL35	584	KNR4/SMI1 homolog OS=Cand	yes	no	0.417	0.169	0.327	3e-05
P32566	505	Cell wall assembly regula	yes	no	0.358	0.168	0.313	9e-05
Q75AQ9	657	KNR4/SMI1 homolog OS=Ashb	yes	no	0.308	0.111	0.371	0.0002
Q9UK99	471	F-box only protein 3 OS=H	yes	no	0.312	0.157	0.328	0.0002
D4ABP9	480	F-box only protein 3 OS=R	yes	no	0.312	0.154	0.328	0.0002
A6H7H7	469	F-box only protein 3 OS=B	yes	no	0.312	0.157	0.328	0.0002

>sp|Q9LND7|SKI16_ARATH F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1

 Score =  277 bits (709), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 138/233 (59%), Positives = 167/233 (71%), Gaps = 6/233 (2%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPW LVKRV+ CWD LK WL  NFPEAKATLRKG +E D+Q+ E SLKVKLP+PTR+LY
Sbjct: 80  MYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLY 139

Query: 61  RFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKE-IRRHLDFPGRD 119
           RF DGQE  + +    G++GLIGGYS Y H VNVYL+PL  ++ ETKE   R L F  R 
Sbjct: 140 RFVDGQELSSPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRL 198

Query: 120 KYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQD 179
             +V+A S   S K F L+CT GQL+ GT N     +++PCVP+AL+   H  N DQQQD
Sbjct: 199 DLIVMAASVVASLKIFLLDCTTGQLFTGTSN----RQLLPCVPDALVRSVHDTNGDQQQD 254

Query: 180 GMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
            MLLWLEEHGRRL  G I +R + N+K I+LFPE PPLCS++VTNGV+V  SS
Sbjct: 255 AMLLWLEEHGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASS 307

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6BW41|SMI1_DEBHA KNR4/SMI1 homolog 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DEHA2B14542g PE=3 SV=2

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 13/109 (11%)

Query: 7   VKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQ 66
           V  V+  W  +KNWL +  P+  +TL+   ++AD+   +K L +KLP      Y+  DGQ
Sbjct: 70  VHEVRLAWRHIKNWLLKYSPDLNSTLQSPCTDADLSDFQKDLNIKLPNCLIEFYKITDGQ 129

Query: 67  ECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDF 115
                 F   G+ GL+ G         + L+P+  +++ T+  R+  D+
Sbjct: 130 SY----FNDNGSGGLVFG---------LKLMPIDEVMVMTEHWRKVADY 165

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q6BJY4|SMI2_DEBHA KNR4/SMI1 homolog 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DEHA2F26422g PE=3 SV=2

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 5   PLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKV-KLPVPTRILYRFC 63
           P +  +   WDR+++WL E +PE    L  G + AD+ + E  L    LPV  R  Y+  
Sbjct: 112 PPLPSIDSLWDRIESWLEEEYPELGDNLNDGVTTADLNEFENDLGCGSLPVEIRQFYKRH 171

Query: 64  DGQ 66
           DGQ
Sbjct: 172 DGQ 174

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q6FL35|SMI1_CANGA KNR4/SMI1 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0L06534g PE=3 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 14/113 (12%)

Query: 3   PWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRF 62
           P   V  V   W  +  W +E  P+  ATL    +  DI+  E+ L+V LP   +  YR 
Sbjct: 71  PSEGVSEVLLAWRHIDTWTSEYNPDLNATLSDPCTANDIKHAEEDLEVVLPKALKASYRI 130

Query: 63  CDGQECQTDDFESI-GAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLD 114
            DGQE    D ES+ G  GLI G         + L+ L  I+  T+  R   D
Sbjct: 131 HDGQE----DLESMTGTSGLIYG---------LQLMTLDEIVAMTQRWRSVAD 170

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|P32566|SMI1_YEAST Cell wall assembly regulator SMI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMI1 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 14/99 (14%)

Query: 13  CWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDD 72
            W  +  W +E+ P+  ATL    ++ DI   E+ L+V  P P +  ++  DGQE    D
Sbjct: 93  AWRHIDFWTSEHNPDLNATLSDPCTQNDITHAEEDLEVSFPNPVKASFKIHDGQE----D 148

Query: 73  FESI-GAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR 110
            ES+ G  GL     FYG      L+ L  ++  T+  R
Sbjct: 149 LESMTGTSGL-----FYG----FQLMTLDQVVAMTQAWR 178

Protein involved in the regulation of cell wall assembly and 1,3-beta-glucan synthesis, possibly through the transcriptional regulation of cell wall glucan and chitin synthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q75AQ9|SMI1_ASHGO KNR4/SMI1 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ADL139W PE=3 SV=2

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 13  CWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDD 72
            W  + +W +E+ P+  ATL    +  DI   EK L +  P   R   R  DGQE    D
Sbjct: 69  AWRHIDSWCSEHNPDLYATLSSPCTNNDIMWAEKDLAITFPAAVRASLRTHDGQE----D 124

Query: 73  FESI-GAMGLIGGYSFYG 89
            ES+ GA GLI G    G
Sbjct: 125 VESMQGASGLIYGLKLMG 142

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q9UK99|FBX3_HUMAN F-box only protein 3 OS=Homo sapiens GN=FBXO3 PE=1 SV=3

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 10  VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
           +K+ WD LK +L    P    +L++GA E D+  +E  +  KLP   R  YR  +GQ+  
Sbjct: 96  IKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLV 155

Query: 70  TDDFESIGAMGLIGGY 85
                 +G+M L   Y
Sbjct: 156 VPGL--LGSMALSNHY 169

Substrate recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Mediates the ubiquitination of HIPK2 and probably that of EP300, leading to rapid degradation by the proteasome. In the presence of PML, HIPK2 ubiquitination still occurs, but degradation is prevented. PML, HIPK2 and FBXO3 may act synergically to activate p53/TP53-dependent transactivation.

Homo sapiens (taxid: 9606)

>sp|D4ABP9|FBX3_RAT F-box only protein 3 OS=Rattus norvegicus GN=Fbxo3 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 10  VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
           +K+ WD LK +L    P    +L++GA E D+  +E  +  KLP   R  YR  +GQ+  
Sbjct: 96  IKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLV 155

Query: 70  TDDFESIGAMGLIGGY 85
                 +G+M L   Y
Sbjct: 156 VPGL--LGSMALSNHY 169

Substrate recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Mediates the ubiquitination of HIPK2, and probably that of EP300, leading to rapid degradation by the proteasome. In the presence of PML, HIPK2 ubiquitination still occurs, but degradation is prevented. PML, HIPK2 and FBXO3 may act synergically to activate p53/TP53-dependent transactivation.

Rattus norvegicus (taxid: 10116)

>sp|A6H7H7|FBX3_BOVIN F-box only protein 3 OS=Bos taurus GN=FBXO3 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 10  VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
           +K+ WD LK +L    P    +L++GA E D+  +E  +  KLP   R  YR  +GQ+  
Sbjct: 96  IKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLV 155

Query: 70  TDDFESIGAMGLIGGY 85
                 +G+M L   Y
Sbjct: 156 VPGL--LGSMALSNHY 169

Substrate recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Mediates the ubiquitination of HIPK2 and probably that of EP300, leading to rapid degradation by the proteasome. In the presence of PML, HIPK2 ubiquitination still occurs, but degradation is prevented. PML, HIPK2 and FBXO3 may act synergically to activate p53/TP53-dependent transactivation.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
225433984	444	PREDICTED: F-box protein SKIP16-like [Vi	0.974	0.520	0.689	1e-88
182407842	443	F-box-containing protein 2 [Malus x dome	0.978	0.523	0.668	3e-88
363807331	443	uncharacterized protein LOC100778108 [Gl	0.978	0.523	0.676	5e-88
224133222	442	predicted protein [Populus trichocarpa]	0.978	0.524	0.668	4e-87
359478141	443	PREDICTED: F-box protein SKIP16-like [Vi	0.978	0.523	0.668	4e-87
449498839	441	PREDICTED: LOW QUALITY PROTEIN: F-box pr	0.978	0.526	0.666	7e-87
449459850	449	PREDICTED: LOW QUALITY PROTEIN: F-box pr	0.978	0.516	0.666	1e-86
255577191	446	protein with unknown function [Ricinus c	0.978	0.520	0.655	6e-85
388508926	444	unknown [Lotus japonicus]	0.974	0.520	0.638	1e-82
359806703	443	uncharacterized protein LOC100809876 [Gl	0.978	0.523	0.676	2e-82

>gi|225433984|ref|XP_002271000.1| PREDICTED: F-box protein SKIP16-like [Vitis vinifera]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 162/235 (68%), Positives = 186/235 (79%), Gaps = 4/235 (1%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPWPLVKRVKRCWDRLKNWL+ NFPEA ATLRKGA+E +I+ LE  LKVKLP+PTR+LY
Sbjct: 82  MYPWPLVKRVKRCWDRLKNWLSANFPEADATLRKGATEVEIEALENILKVKLPLPTRLLY 141

Query: 61  RFCDGQECQTDDFESIG---AMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RFCDGQE  TDD        ++G+IGGY FY HLVNV L+PL  +I+ETKEI   L F  
Sbjct: 142 RFCDGQEL-TDDVGGTALGSSLGIIGGYCFYDHLVNVCLLPLRQVILETKEITDQLGFST 200

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
             KYV+VA SSTY  KFFFLNCT GQLYVGT++L+S GEMIPCVPNALI+  H  N+ QQ
Sbjct: 201 TSKYVIVAASSTYIGKFFFLNCTTGQLYVGTRSLVSAGEMIPCVPNALISPMHDSNTGQQ 260

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
           QD MLLWLEEH RRL NGII+LR+E  ++ INLFPEE PLCS AVTNGV+V  S+
Sbjct: 261 QDAMLLWLEEHVRRLQNGIIKLRNEGMIRSINLFPEESPLCSTAVTNGVQVRASA 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|182407842|gb|ACB87912.1| F-box-containing protein 2 [Malus x domestica]

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/235 (66%), Positives = 191/235 (81%), Gaps = 3/235 (1%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPW LVKRVKRCWD+++NWL  NFPEA +TL+KGASEADIQ++EK LKVKLP+PTRILY
Sbjct: 80  MYPWSLVKRVKRCWDKIRNWLTINFPEAVSTLKKGASEADIQEVEKILKVKLPLPTRILY 139

Query: 61  RFCDGQECQTDDFES--IGA-MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RF +GQ  +   F++  +G  +GLIGGY+FY  LV VYL+PL  +++ET +IRR L F G
Sbjct: 140 RFHNGQAFEEKHFQNNLVGCPLGLIGGYAFYDQLVTVYLMPLRQVVLETMKIRRKLGFTG 199

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
           R +YVVVA S  YS K FFLNCT+GQLYVGT+NL +DG+M+PCVP+ALI+  H CN D+Q
Sbjct: 200 RSEYVVVADSCAYSGKLFFLNCTSGQLYVGTRNLPTDGQMLPCVPDALISSIHDCNVDRQ 259

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
           QDGMLLWLEEHGRRL NGII+LR EEN + I+ FPEE PLCS A+TNGVKV  S+
Sbjct: 260 QDGMLLWLEEHGRRLENGIIKLRQEENFRTISQFPEESPLCSTAITNGVKVRASA 314

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807331|ref|NP_001242370.1| uncharacterized protein LOC100778108 [Glycine max] gi|255641731|gb|ACU21136.1| unknown [Glycine max]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 159/235 (67%), Positives = 189/235 (80%), Gaps = 3/235 (1%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPW LVKRVKRCWD++K WL  NFPEA+ATL KGA+EADIQ+LE  LKVKLP+P+RILY
Sbjct: 80  MYPWSLVKRVKRCWDKIKTWLTNNFPEAEATLCKGATEADIQELENVLKVKLPLPSRILY 139

Query: 61  RFCDGQECQTDDFESI---GAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RF +GQE    D E+     ++GLIGGYSFY HLVNVYL+P+  II+ETK+ RRHL F  
Sbjct: 140 RFHNGQEIAKADPETTTYGSSLGLIGGYSFYSHLVNVYLLPIRQIILETKQTRRHLSFLR 199

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
           R KYV+VA SSTYS K FFL+CTNGQLYVGT++LL++G++IPCVP+ LI L    N  +Q
Sbjct: 200 RSKYVLVAASSTYSRKLFFLSCTNGQLYVGTRDLLTEGDIIPCVPHDLINLHQELNISEQ 259

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
           QD MLLWLEEHGRRL +G I+L D+ N K INLFPEEPPLCS+AVTNGVKV  S+
Sbjct: 260 QDAMLLWLEEHGRRLEHGFIKLHDKGNGKSINLFPEEPPLCSMAVTNGVKVRASA 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133222|ref|XP_002327990.1| predicted protein [Populus trichocarpa] gi|222837399|gb|EEE75778.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/235 (66%), Positives = 186/235 (79%), Gaps = 3/235 (1%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPW LVKRVK CWDRLK+WL  NFPE KATL +GASE +IQ+LE+ LKVKLP+PTR+LY
Sbjct: 82  MYPWSLVKRVKSCWDRLKSWLTTNFPEVKATLGRGASEGEIQELERILKVKLPLPTRLLY 141

Query: 61  RFCDGQECQTDDFESIGA---MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RF DGQ    ++  +  A   +GLIGGY FY HLVNVYL+PL  +I+ET+EI RHLD P 
Sbjct: 142 RFHDGQNLTGENLNTDAAACLLGLIGGYCFYDHLVNVYLLPLHEVILETREIVRHLDLPN 201

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
             +++VVA SS+   KFFFLNC++GQLYVGT+NLL+ GEMIPCVP  LI+  H  N DQQ
Sbjct: 202 GSQFIVVAASSSNIGKFFFLNCSDGQLYVGTQNLLTIGEMIPCVPQTLISPVHDFNIDQQ 261

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
           QD MLLWLEEHG RLHNG+I+LRDE N+K I+LFPEE PLCS AVTNGVKV  S+
Sbjct: 262 QDAMLLWLEEHGHRLHNGMIKLRDEGNIKSISLFPEESPLCSTAVTNGVKVRASA 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478141|ref|XP_002271295.2| PREDICTED: F-box protein SKIP16-like [Vitis vinifera]

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/235 (66%), Positives = 184/235 (78%), Gaps = 3/235 (1%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPWPLVKRVKRCWDRLKNWL+ NFP+A ATLRKGA+E +I+ LE  LKVKLP+PTR+LY
Sbjct: 80  MYPWPLVKRVKRCWDRLKNWLSANFPDADATLRKGATEVEIEALENILKVKLPLPTRLLY 139

Query: 61  RFCDGQECQTDDFESI---GAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RFCDGQE   +D       G++G++GGY    HLVNV L+PL  +I+ETKEI   L F  
Sbjct: 140 RFCDGQELTEEDVGGTALGGSLGIMGGYCCNDHLVNVCLLPLRQVILETKEITDQLGFST 199

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
             KYV+VA SSTY  KFFFLNCT GQLYVGT++L+S GEMIPCVPNALI+  H  N+ QQ
Sbjct: 200 TSKYVIVAASSTYIGKFFFLNCTTGQLYVGTRSLVSAGEMIPCVPNALISPMHDMNTGQQ 259

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
           QD MLLWLEEH RRL NGII+LR E  ++ INLFPEEPPLCS AVTNG++V  S+
Sbjct: 260 QDAMLLWLEEHVRRLQNGIIKLRKEGMIRSINLFPEEPPLCSTAVTNGIQVRASA 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498839|ref|XP_004160649.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP16-like [Cucumis sativus]

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 156/234 (66%), Positives = 186/234 (79%), Gaps = 2/234 (0%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPWPLVKRVKRCWDRLKNWL+ NFPEA  TLR GASEADI++LE  LKVKLP+PTRILY
Sbjct: 80  MYPWPLVKRVKRCWDRLKNWLSTNFPEALRTLRDGASEADIEELENVLKVKLPLPTRILY 139

Query: 61  RFCDGQECQTDDFESIGA--MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGR 118
           RF +GQE +    +SI    +GLIGGY+FYG  VNVYL+PL  ++ ETK I R + F  +
Sbjct: 140 RFHNGQELKGGYVDSIRGFPLGLIGGYTFYGETVNVYLLPLRQVVFETKSIIRDVGFQXK 199

Query: 119 DKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQ 178
            K++VVA SST++EK FFLNC +GQL+VGT  L  DGEMIPCVP ALI   H CN++QQQ
Sbjct: 200 SKFIVVASSSTFTEKVFFLNCASGQLFVGTAKLRDDGEMIPCVPGALINSVHECNTEQQQ 259

Query: 179 DGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
           D MLLWLEEH RRL NGII+LR+ +N++ I+LFPEEPPLCS AVTNGV+V  S+
Sbjct: 260 DAMLLWLEEHVRRLENGIIKLREIKNIRSISLFPEEPPLCSTAVTNGVRVRASA 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459850|ref|XP_004147659.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP16-like [Cucumis sativus]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 156/234 (66%), Positives = 186/234 (79%), Gaps = 2/234 (0%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPWPLVKRVKRCWDRLKNWL+ NFPEA  TLR GASEADI++LE  LKVKLP+PTRILY
Sbjct: 88  MYPWPLVKRVKRCWDRLKNWLSTNFPEALRTLRDGASEADIEELENVLKVKLPLPTRILY 147

Query: 61  RFCDGQECQTDDFESIGA--MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGR 118
           RF +GQE +    +SI    +GLIGGY+FYG  VNVYL+PL  ++ ETK I R + F  +
Sbjct: 148 RFHNGQELKGGYVDSIRGFPLGLIGGYTFYGETVNVYLLPLRQVVFETKSIIRDVGFSRK 207

Query: 119 DKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQ 178
            K++VVA SST++EK FFLNC +GQL+VGT  L  DGEMIPCVP ALI   H CN++QQQ
Sbjct: 208 SKFIVVASSSTFTEKVFFLNCASGQLFVGTAKLRDDGEMIPCVPGALINSVHECNTEQQQ 267

Query: 179 DGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
           D MLLWLEEH RRL NGII+LR+ +N++ I+LFPEEPPLCS AVTNGV+V  S+
Sbjct: 268 DAMLLWLEEHVRRLENGIIKLREIKNIRSISLFPEEPPLCSTAVTNGVRVRASA 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577191|ref|XP_002529478.1| protein with unknown function [Ricinus communis] gi|223531036|gb|EEF32888.1| protein with unknown function [Ricinus communis]

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 156/238 (65%), Positives = 187/238 (78%), Gaps = 6/238 (2%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPWPLVKRVKRCWDRLKNWL  NFPEA ATL++GA+E +I++ EK L+VKLP+PTR+LY
Sbjct: 80  MYPWPLVKRVKRCWDRLKNWLTTNFPEAAATLQQGATEDEIRRFEKVLEVKLPLPTRVLY 139

Query: 61  RFCDGQECQTDDFESIGA---MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RF +GQ  Q  D  +      +GLIGGY+FY HLVNVYL+PL  +I+ETK+I  HL   G
Sbjct: 140 RFYNGQVFQEKDALTSAHGNNLGLIGGYAFYHHLVNVYLLPLDQVILETKQIVCHLGISG 199

Query: 118 ---RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNS 174
                KY+VVA SS + EKFFFLNCTNGQLYVGT+NL  DGEM+PCVPNAL+   H  +S
Sbjct: 200 GFNSTKYIVVAASSAFIEKFFFLNCTNGQLYVGTRNLPIDGEMMPCVPNALLRSVHDPSS 259

Query: 175 DQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
           DQQ+DGMLLWLEEHGRRL +GII+LR+E N++ I  FPEEPP CS A+TNGVKV  S+
Sbjct: 260 DQQRDGMLLWLEEHGRRLQDGIIKLREERNIRTICQFPEEPPSCSTAITNGVKVRASA 317

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508926|gb|AFK42529.1| unknown [Lotus japonicus]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 150/235 (63%), Positives = 182/235 (77%), Gaps = 4/235 (1%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPW LVKRVK+CWD+LK WL  NFPEA+ATL KGASEA+I +LE  L+VKLP+PTRILY
Sbjct: 82  MYPWSLVKRVKQCWDKLKTWLVNNFPEAEATLCKGASEAEILELENVLEVKLPLPTRILY 141

Query: 61  RFCDGQECQTDDFESI---GAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RF +GQE    D ES     ++GLIGGYSFY HLVNVYL+PL  +I+ET+ + RHL F  
Sbjct: 142 RFHNGQEIANGDLESDTFGSSLGLIGGYSFYSHLVNVYLLPLRQVILETQNLTRHLGFLR 201

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
           R KYV+VA SST +EK FFLNC +GQLYVGT+   +  ++IPCVP+ LI+L HG N++QQ
Sbjct: 202 RSKYVLVAASSTQNEKLFFLNCIDGQLYVGTRTFFTSEDLIPCVPHNLISL-HGLNNEQQ 260

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
           QD MLLW EEHGRRL  G I+L +E N + INLFPEEPPLCS  +TNGV+V  S+
Sbjct: 261 QDAMLLWFEEHGRRLQQGFIKLHEEGNNRSINLFPEEPPLCSTVITNGVQVRASA 315

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806703|ref|NP_001241035.1| uncharacterized protein LOC100809876 [Glycine max] gi|255635912|gb|ACU18303.1| unknown [Glycine max]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 159/235 (67%), Positives = 187/235 (79%), Gaps = 3/235 (1%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPW LVKRVKRCWDR+K WL  NFPEA+ATL KGA+EADIQ+LE  LKVKLP+PTRILY
Sbjct: 80  MYPWSLVKRVKRCWDRIKTWLTNNFPEAEATLCKGATEADIQELENVLKVKLPLPTRILY 139

Query: 61  RFCDGQECQTDDFESIG---AMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RF +GQE    D E+     ++GLIGGYSFYGHLVNVYL+P+  II+ET++ RR L F  
Sbjct: 140 RFHNGQEFAKADPETSTFGRSLGLIGGYSFYGHLVNVYLLPICQIILETQQTRRRLSFLR 199

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
           R KYV+VA SSTYS K FFLNCTNGQLYVGT++ L++ ++IPCVP+ LI+L    NS +Q
Sbjct: 200 RSKYVLVAASSTYSRKLFFLNCTNGQLYVGTRSPLTERDIIPCVPHDLISLHQELNSSEQ 259

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
           QD MLLWLEEHGRRL +G I+L DE N K INLFPEEP +CS AVTNGVKV  S+
Sbjct: 260 QDAMLLWLEEHGRRLEHGFIKLHDEGNGKSINLFPEEPHICSTAVTNGVKVRASA 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2198826	436	SKIP16 "SKP1/ASK-interacting p	0.957	0.520	0.592	1.8e-69

TAIR|locus:2198826 SKIP16 "SKP1/ASK-interacting protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 138/233 (59%), Positives = 167/233 (71%)

Query:     1 MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
             MYPW LVKRV+ CWD LK WL  NFPEAKATLRKG +E D+Q+ E SLKVKLP+PTR+LY
Sbjct:    80 MYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLY 139

Query:    61 RFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKE-IRRHLDFPGRD 119
             RF DGQE  + +    G++GLIGGYS Y H VNVYL+PL  ++ ETKE   R L F  R 
Sbjct:   140 RFVDGQELSSPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRL 198

Query:   120 KYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQD 179
               +V+A S   S K F L+CT GQL+ GT N     +++PCVP+AL+   H  N DQQQD
Sbjct:   199 DLIVMAASVVASLKIFLLDCTTGQLFTGTSNR----QLLPCVPDALVRSVHDTNGDQQQD 254

Query:   180 GMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
              MLLWLEEHGRRL  G I +R + N+K I+LFPE PPLCS++VTNGV+V  SS
Sbjct:   255 AMLLWLEEHGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASS 307


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.140   0.444    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      237       237   0.00090  113 3  11 22  0.39    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  208 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.62u 0.08s 20.70t   Elapsed:  00:00:00
  Total cpu time:  20.62u 0.08s 20.70t   Elapsed:  00:00:00
  Start:  Fri May 10 16:34:49 2013   End:  Fri May 10 16:34:49 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00640134 hypothetical protein (442 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
COG4282	191	COG4282, SMI1, Protein involved in beta-1,3-glucan	1e-09

>gnl|CDD|226732 COG4282, SMI1, Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 22/63 (34%), Positives = 28/63 (44%)

Query: 5  PLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCD 64
          P        W R+  W+AE+ P+    LR GA+  DIQ+ E  L   LP   R      D
Sbjct: 2  PNQSEPSLAWRRIDTWVAEHHPDLLPFLRPGATCGDIQRAEADLGRTLPPDVRESLAIHD 61

Query: 65 GQE 67
          GQ 
Sbjct: 62 GQP 64

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	99.88
COG4282	191	SMI1 Protein involved in beta-1,3-glucan synthesis	99.87
PF09346	130	SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro:	98.87
smart00860	129	SMI1_KNR4 SMI1 / KNR4 family. Proteins in this fam	98.65
PF14568	120	SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.	98.19
PF14567	132	SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.	97.8
PF07348	176	Syd: Syd protein (SUKH-2); InterPro: IPR009948 Thi	91.15
PRK04968	181	SecY interacting protein Syd; Provisional	83.89

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=99.88  E-value=3.4e-24  Score=194.77  Aligned_cols=189  Identities=23%  Similarity=0.281  Sum_probs=152.6

Q ss_pred             CCCChhHHHHHHHHHH-HHHHHHhhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCccccccc
Q 026498            1 MYPWPLVKRVKRCWDR-LKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAM   79 (237)
Q Consensus         1 ~y~~~~~~~v~~~W~r-ie~wL~~~~P~~~~~L~~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~   79 (237)
                      ||||.++++|.-.|+. ++.|...|.|+..++|++||++.|++++|+.+|++||.++|++||++|||...        .+
T Consensus        75 h~~f~yvgvv~~~w~arlk~wd~ln~~~~~aal~ega~e~dl~a~e~s~~~kLp~~~r~~yrev~Gq~l~--------~y  146 (386)
T KOG4408|consen   75 HDTFGYVGVVLFPWAARLKDWDDLNKYLEPAALKEGAREPDLDAVEASIGCKLPDDYRCSYREVKGQTLT--------FY  146 (386)
T ss_pred             eeecccceEEEEechHhhhhhhhcccccccchhhccCcccchhhhhhcccccCCCccccchhhcCCeEEe--------eh
Confidence            6899999999999997 99999999999999999999999999999999999999999999999999986        69


Q ss_pred             ccccceeeccceeeeeecChHHHHHHHHHHHhhcCCC-CCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCccc
Q 026498           80 GLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFP-GRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMI  158 (237)
Q Consensus        80 Gl~gg~~~y~~~~~~~LLpL~~i~~~~~~~r~~~~~~-g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~  158 (237)
                      |++|+|..|+|.+.       ++..+....--  .++ +.+ .+-.+++-.+-.+.++++|+.++.+-|+      -|.+
T Consensus       147 qvLi~~~d~sH~~~-------ev~~e~~t~~~--nf~~r~~-L~y~ipgld~v~hedilpyts~e~~~g~------heLf  210 (386)
T KOG4408|consen  147 QVLIDMRDCSHIRS-------EVQTEAVTFLG--NFDSRQG-LKYAIPGLDYVSHEDILPYTSSEAVPGQ------HELF  210 (386)
T ss_pred             heeeecccCccccc-------hhhhhhhhhhc--Ccccccc-hheecccceeEeeccccccccccccccc------hhhh
Confidence            99999999999883       33333222211  221 111 1122233345567889999999876544      2678


Q ss_pred             ccCccchhcccCCCCCCcccchHHHHHHHHhhhhhcccEEEeecCccceeeeCCCCCCCceeeEeCcEEEEEEeee
Q 026498          159 PCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSSDL  234 (237)
Q Consensus       159 pcvp~~~i~~~~d~~~~~~~ds~~~WLe~~~~~L~~G~~~v~~~~~~r~i~lfP~~~p~c~~a~T~gv~V~~s~v~  234 (237)
                      +|+|+ +.+..++.+.++.++.|++|+|+  ++  +|.+.+++      |     +.     +|||+|+|+||++|
T Consensus       211 ~~~pd-l~r~~~~~~~f~~q~tl~~W~e~--kn--~gwl~~~d------V-----h~-----etTenI~Vtvstfy  265 (386)
T KOG4408|consen  211 DQFPD-LARDPAAIPPFVIQDTLTAWQES--KN--HGWLPIRD------V-----HR-----ETTENIRVTVSTFY  265 (386)
T ss_pred             hhhhh-hhcCcccCCchhhhHHHHHHHhc--CC--CCCcChhh------C-----Ch-----hhcCCeEEEEEEee
Confidence            99999 77888888899999999999999  55  89999884      2     11     89999999999998

>COG4282 SMI1 Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.3e-21  Score=162.77  Aligned_cols=174  Identities=21%  Similarity=0.247  Sum_probs=140.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccc
Q 026498            5 PLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGG   84 (237)
Q Consensus         5 ~~~~~v~~~W~rie~wL~~~~P~~~~~L~~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg   84 (237)
                      |.+..+..+|+||+.|-++|.|++..+|+||||.++|+.+|++||++||+++|++|.+||||...+      ...|    
T Consensus         2 ~~~se~slawrrId~W~aeh~pdl~~~l~pgat~~di~~aE~dlg~tlPpdvResl~iHDGq~dgs------~ptg----   71 (191)
T COG4282           2 PNQSEPSLAWRRIDTWVAEHHPDLLPFLRPGATCGDIQRAEADLGRTLPPDVRESLAIHDGQPDGS------PPTG----   71 (191)
T ss_pred             CCCchHHHHHHHHHHHHHhcCcccccccCCCccHHHHHHHHHHhcCcCChHHHHHHHhhCCCcCCC------Cccc----
Confidence            456778899999999999999999999999999999999999999999999999999999998763      1223    


Q ss_pred             eeeccceeeeeecChHHHHHHHHHHHhhcC----CCCCCee-----eEEEeccCCCcceEEEecCCCeeEEeee-ccCCC
Q 026498           85 YSFYGHLVNVYLIPLSHIIMETKEIRRHLD----FPGRDKY-----VVVAFSSTYSEKFFFLNCTNGQLYVGTK-NLLSD  154 (237)
Q Consensus        85 ~~~y~~~~~~~LLpL~~i~~~~~~~r~~~~----~~g~~~~-----i~~~as~~~~~~~~~ld~~~G~l~vg~~-n~~~~  154 (237)
                                .||.|+++..+++.||+...    +.|+...     -.|-...+.+..++.|+.+.++.-++.+ -++..
T Consensus        72 ----------~ll~le~~~~~~~aWrdlaq~~~T~~G~~s~~e~s~~sfppgvywhPaWIPL~~d~~Gnhi~IDLaPgp~  141 (191)
T COG4282          72 ----------LLLRLEPLDLELIAWRDLAQRDGTYGGEVSPSEGSGRSFPPGVYWHPAWIPLFGDPRGNHICIDLAPGPT  141 (191)
T ss_pred             ----------chhhhHHHHHHHHHHHHHHHhcCCcCCcccccccccccCCCCccccCceeeecccCCCCeEEEecCCCCC
Confidence                      67888888888888877654    2233221     1122222456778999998888877777 45556


Q ss_pred             CcccccCccchhcccCCCC-CCcccchHHHHHHHHhhhhhcccEEEeecC
Q 026498          155 GEMIPCVPNALIALGHGCN-SDQQQDGMLLWLEEHGRRLHNGIIRLRDEE  203 (237)
Q Consensus       155 G~~~pcvp~~~i~~~~d~~-~~~~~ds~~~WLe~~~~~L~~G~~~v~~~~  203 (237)
                      |.     -+|+|-+++|.+ .+..+-|+.++|...+..+++|..-+.++.
T Consensus       142 g~-----ygQiI~FgrD~dtk~vVa~swaefls~~And~e~g~wllddd~  186 (191)
T COG4282         142 GG-----YGQIIWFGRDEDTKPVVAQSWAEFLSRIANDVETGRWLLDDDY  186 (191)
T ss_pred             CC-----cceEEEeccccccCeehhccHHHHHHHHHhHHhhcceecccCc
Confidence            64     678999988876 889999999999999999999999887764

>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]

Probab=98.87  E-value=1.2e-09  Score=84.46  Aligned_cols=34  Identities=29%  Similarity=0.395  Sum_probs=21.0

Q ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcC
Q 026498           35 GASEADIQQLEKSLKVKLPVPTRILYRFCDGQEC   68 (237)
Q Consensus        35 gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~   68 (237)
                      |||+++|+++|++||++||++||+||+.|++...
T Consensus         1 p~t~~~I~~~E~~lg~~LP~~yk~fl~~~~~~~~   34 (130)
T PF09346_consen    1 PATEEEIQELEEKLGVRLPDDYKEFLKEHNNGGI   34 (130)
T ss_dssp             ---HHHHHHHHHHHTS---HHHHHHHH-------
T ss_pred             CCCHHHHHHHHHHhCCCCcHHHHHHHHhhccccc
Confidence            7999999999999999999999999998755444

Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.

>smart00860 SMI1_KNR4 SMI1 / KNR4 family

Probab=98.65  E-value=8.9e-08  Score=72.02  Aligned_cols=35  Identities=37%  Similarity=0.490  Sum_probs=33.2

Q ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCc
Q 026498           35 GASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ   69 (237)
Q Consensus        35 gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~   69 (237)
                      |+|+++|+++|+.||++||++||+||+.|||....
T Consensus         1 ~~s~~~i~~~e~~lg~~LP~~y~~f~~~~~g~~~~   35 (129)
T smart00860        1 PASEEEIAELEKKLGIKLPEDYKEFLLLHNGGELG   35 (129)
T ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHHcCCEEeC
Confidence            68999999999999999999999999999999765

Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.

>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A

Probab=98.19  E-value=9.1e-06  Score=62.65  Aligned_cols=31  Identities=32%  Similarity=0.438  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHhHHhCCCcC
Q 026498           38 EADIQQLEKSLKVKLPVPTRILYRFCDGQEC   68 (237)
Q Consensus        38 e~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~   68 (237)
                      +++|+++|++||++||.++|.+++.+||...
T Consensus         1 ee~I~~~E~~Lg~~lP~~Yk~fL~~~~gg~~   31 (120)
T PF14568_consen    1 EEEIEEAEKKLGVKLPEDYKEFLKEYNGGYF   31 (120)
T ss_dssp             -HHHHHHHHHHTS---HHHHHHHHHC-SEEE
T ss_pred             ChHHHHHHHHhCCCCCHHHHHHHHHcCCEEE
Confidence            5899999999999999999999999999764

>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A

Probab=97.80  E-value=0.00019  Score=58.58  Aligned_cols=87  Identities=11%  Similarity=0.188  Sum_probs=45.7

Q ss_pred             CCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHHHHHHHhhc
Q 026498           34 KGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHL  113 (237)
Q Consensus        34 ~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~~~~~r~~~  113 (237)
                      .++++++|.++|++||++||++||++++...+.....-.     ..|+--.        ..+..    +.+.+...|+ .
T Consensus        20 ~lpd~e~I~~~Ee~L~i~lP~eyk~fL~~~s~v~~G~~E-----~~~i~~~--------~s~~~----l~e~~~~ar~-~   81 (132)
T PF14567_consen   20 ELPDDEQIVEAEEQLGISLPEEYKEFLLEASDVIYGGLE-----PVGIGDP--------PSHTY----LPEVTADARS-I   81 (132)
T ss_dssp             ----HHHHHHHHHHHT----HHHHHHHHHHTT--BTTB------B-BSS-T--------TSTTB----HHHHHHHHHH-H
T ss_pred             CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCeeecceE-----EEEEEcC--------CCccc----HHHHHHHHHH-c
Confidence            468999999999999999999999999998766443211     1111110        01122    3444555565 4


Q ss_pred             CCCCCCeeeEEEeccCCCcceEEEecCCCee
Q 026498          114 DFPGRDKYVVVAFSSTYSEKFFFLNCTNGQL  144 (237)
Q Consensus       114 ~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l  144 (237)
                      +.  +..++++|..   ++.++.+| .+|++
T Consensus        82 gl--P~~~ipice~---~~~yYcl~-~~g~V  106 (132)
T PF14567_consen   82 GL--PRELIPICED---GGDYYCLD-QEGEV  106 (132)
T ss_dssp             T----TTSEEEEEE---TTEEEEE--TTS-E
T ss_pred             CC--ChhheeEEec---CCcEEEEe-CCCeE
Confidence            44  5668999863   46777777 56664

>PF07348 Syd: Syd protein (SUKH-2); InterPro: IPR009948 This family contains a number of bacterial Syd proteins approximately 180 residues long

Probab=91.15  E-value=1.2  Score=38.03  Aligned_cols=114  Identities=12%  Similarity=0.166  Sum_probs=53.7

Q ss_pred             CHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHH------HHHHH
Q 026498           37 SEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIME------TKEIR  110 (237)
Q Consensus        37 te~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~------~~~~r  110 (237)
                      ..+++..+|+.|+++|+++++++|-    .-...      .-.+-++|+.    ..-+..+|=++..+-      ...++
T Consensus        55 ~~~~f~~vE~aLei~lh~~i~~fy~----~~~~~------dm~a~~~~~~----l~LlqvW~e~Df~rLQeNliGHl~mk  120 (176)
T PF07348_consen   55 EAADFSNVERALEIQLHPDIHAFYG----SYFSG------DMPASFGGGE----LELLQVWNEDDFERLQENLIGHLVMK  120 (176)
T ss_dssp             S-SS-HHHHHHCT----HHHHHHCC----SEE---------EEEEETTEE----EEE----SHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHhCCcccHHHHHHHh----hhhcc------CcceEeCCce----EEEEecCCcccHHHHHHHHHHHHHHH
Confidence            3578999999999999999999992    22210      1223333321    111223444444443      33444


Q ss_pred             hhcCCCCCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCcccccCccchhcccCCCCCCcccchHHHHHHHH
Q 026498          111 RHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEH  188 (237)
Q Consensus       111 ~~~~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~~~~~~~ds~~~WLe~~  188 (237)
                      +++.- .+..+|++.+   ....++-+|-.+|.+..=+  +   |.               -.+...++|+.++|+..
T Consensus       121 rrLKq-~pT~FIg~t~---~e~~lisv~N~sGeV~LE~--~---G~---------------~~~~~LA~sL~eFL~~L  174 (176)
T PF07348_consen  121 RRLKQ-PPTLFIGTTD---SEDMLISVDNESGEVILEQ--F---GT---------------KPREVLAPSLAEFLSQL  174 (176)
T ss_dssp             HHTT----EEEEEEES---STTEEEEEETTT--EEEEE--T---TS---------------S-EEEEESSHHHHHHH-
T ss_pred             Hhhcc-CCceeEEEec---CCCcEEEEECCCCeEEEEe--C---CC---------------CcceehhhhHHHHHHhc
Confidence            44432 1233455443   3466777777888775411  0   11               02467889998888753

It has been suggested that Syd is loosely associated with the cytoplasmic surface of the cytoplasmic membrane, and that interaction with SecY may be involved in this membrane association [].; GO: 0009898 internal side of plasma membrane; PDB: 3FFV_B.

>PRK04968 SecY interacting protein Syd; Provisional

Probab=83.89  E-value=10  Score=32.67  Aligned_cols=115  Identities=12%  Similarity=0.171  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHHHHHHHhh----
Q 026498           37 SEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRH----  112 (237)
Q Consensus        37 te~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~~~~~r~~----  112 (237)
                      .+.++..+|+.|+++|.++++++|--.=..+          -.+-++|..    ..-+..++.++..+-.+++-.+    
T Consensus        56 ~~~~f~~vE~aLei~lh~~I~~fy~s~~s~d----------m~a~~~~~~----~~LlQvWsedDF~rLQeNliGHl~mq  121 (181)
T PRK04968         56 PEGNFNNVERALEITLHPDIHAFYTTQFAGD----------MTAQFGGGE----LTLLQVWSEDDFERLQENLIGHLVMQ  121 (181)
T ss_pred             CcccHHHHHHhhcCeecHHHHHHHhhhhcCC----------cceEeCCce----EEEEEeccHHHHHHHHHHHHHHHHHH
Confidence            5679999999999999999999993321111          233344421    1223446777766644444333    


Q ss_pred             --cCCCCCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCcccccCccchhcccCCCCCCcccchHHHHHHHHh
Q 026498          113 --LDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHG  189 (237)
Q Consensus       113 --~~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~~~~~~~ds~~~WLe~~~  189 (237)
                        +-- .+.-+|+..+   ...+++-+|-.+|++..=+     -|.               -.+...++|+.++|+..-
T Consensus       122 krLK~-~PT~FIg~~~---~e~~~isv~N~sGeV~lE~-----~G~---------------~~r~vLA~sL~eFL~~L~  176 (181)
T PRK04968        122 KRLKL-PPTLFIATTD---EEDEVISVCNLSGEVILET-----LGT---------------RKRTVLAPSLAEFLNQLE  176 (181)
T ss_pred             HhhCC-CCcEEEEEec---CCCeEEEEECCCCeEEEEe-----CCC---------------CcceehhhCHHHHHHhCC
Confidence              322 1233455432   3466777777788765411     011               025688999999887653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
2prv_A	153	Uncharacterized protein YOBK; structural genomics,	6e-04
2icg_A	160	LIN2918 protein; hypothetical protein, structural	6e-04

>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1 Length = 153

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 26/129 (20%)

Query: 15  DRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFE 74
            +++N++ EN  +  A   +GAS  +I ++E++L+  LP   +                 
Sbjct: 5   SKVENFINEN--KQNAIFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGA--------- 53

Query: 75  SIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKF 134
                G + G    G+  +      + ++  T E + H      D  VV+          
Sbjct: 54  -----GGLFGVLVLGYNFDH-----ASVVNRTNEYKEHYGLT--DGLVVIEDV---DYFA 98

Query: 135 FFLNCTNGQ 143
           + L+    +
Sbjct: 99  YCLDTNKMK 107

>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1 Length = 160

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 12/128 (9%), Positives = 36/128 (28%), Gaps = 21/128 (16%)

Query: 15  DRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFE 74
           + +   +  +            +   I+  + +L  + P   ++                
Sbjct: 8   EEVDRLITLS--GITFHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGT--------- 56

Query: 75  SIGAMGLIGGYSFYGHL-VNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEK 133
                    G SFYG     +    +  +   T++ R   D     + ++    ++    
Sbjct: 57  -----LTFNGVSFYGISKRGLSAASIPDVKFATEQARTFGDIN--KEMIM--IKNSGYGS 107

Query: 134 FFFLNCTN 141
            F ++ + 
Sbjct: 108 IFSIDTSI 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
3d5p_A	144	Putative glucan synthesis regulator of SMI1/KNR4;	99.08
2icg_A	160	LIN2918 protein; hypothetical protein, structural	98.98
2prv_A	153	Uncharacterized protein YOBK; structural genomics,	98.97
2pag_A	135	Hypothetical protein; nysgx, target 10412I, novel	98.53
3ffv_A	181	Protein SYD; membrane, translocon, secyeg, nanodis	88.75

>3d5p_A Putative glucan synthesis regulator of SMI1/KNR4; STR genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Bacteroides fragilis nctc 9343}

Probab=99.08  E-value=6.9e-10  Score=89.39  Aligned_cols=117  Identities=16%  Similarity=0.251  Sum_probs=80.4

Q ss_pred             hcCCCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHHHHHHH
Q 026498           31 TLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR  110 (237)
Q Consensus        31 ~L~~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~~~~~r  110 (237)
                      .+++|||+++|+++|++||++||+++|+||+.|||.....         |   + .      -..+++++++++.+..++
T Consensus        10 ~~~~~~s~~~I~~~E~~lgi~lP~~Yk~fl~~~NGg~~~~---------~---~-~------~~~l~~~~~i~e~n~~~~   70 (144)
T 3d5p_A           10 YKKDGASSASIDDVEKLLNTTLPKQYKSFLLWSNGGEGKL---------G---D-N------YIYIWAIEDVIAYNHDYG   70 (144)
T ss_dssp             EECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHCSSEEEEE---------T---T-E------EEEECCHHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcccC---------C---C-c------eeEeeCHHHHHHHHHHhh
Confidence            5789999999999999999999999999999999986541         1   1 0      035788999988776665


Q ss_pred             hhcCCCCCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCcccccCccchhcccCCCCCCcccchHHHHHHHH
Q 026498          111 RHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEH  188 (237)
Q Consensus       111 ~~~~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~~~~~~~ds~~~WLe~~  188 (237)
                      .....  +..+++++....   ..+.+|.+++++|.--.    ++.  .  +         ......|+||.+||+..
T Consensus        71 ~~~~~--p~~~i~i~~D~g---~~~~~d~~~~~V~~~d~----~~~--~--~---------~~~~~iA~sF~eFL~~~  126 (144)
T 3d5p_A           71 IQKYL--QKEYWAFGMDGD---IGYILHLSDNSIYRVDL----GDL--D--I---------TSIKYIAPSFDDFLGKA  126 (144)
T ss_dssp             HHHHS--CTTEEEEEEETT---EEEEEETTTCCEEEEET----TSC--C--G---------GGCEEEESSHHHHHHHH
T ss_pred             hhhhc--CCCEEEEEEcCC---eEEEECCCCCEEEEEEC----CCC--C--h---------hhheeHhhCHHHHHHHH
Confidence            43322  344788776432   45666766677664211    000  0  0         02346799999999864

>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1

Probab=98.98  E-value=6.4e-09  Score=84.62  Aligned_cols=142  Identities=11%  Similarity=0.135  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHhhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccce
Q 026498           12 RCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHL   91 (237)
Q Consensus        12 ~~W~rie~wL~~~~P~~~~~L~~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~   91 (237)
                      ..-++|++.+.++- + ...+.+|+|+++|+++|+.||++||++||.+++.+||....              |..+|+..
T Consensus         5 ~~~~~i~~~i~~~~-~-~~~~~~~~s~~~I~~~E~~Lgi~lP~~Yk~fL~~~~gg~~~--------------g~~i~~i~   68 (160)
T 2icg_A            5 SFLEEVDRLITLSG-I-TFHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFN--------------GVSFYGIS   68 (160)
T ss_dssp             HHHHHHHHHHHHCC-S-CCBCCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHTSSEEET--------------TEEECBCC
T ss_pred             HHHHHHHHHHHHcc-c-ccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCcccC--------------ceeeeeec
Confidence            44567777776543 2 23567899999999999999999999999999999987542              11111111


Q ss_pred             e-eeeecChHHHHHHHHHHHhhcCCCCCCeeeEEEeccCCCcceEEEecC------CCeeEEeeeccCCCCcccccCccc
Q 026498           92 V-NVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCT------NGQLYVGTKNLLSDGEMIPCVPNA  164 (237)
Q Consensus        92 ~-~~~LLpL~~i~~~~~~~r~~~~~~g~~~~i~~~as~~~~~~~~~ld~~------~G~l~vg~~n~~~~G~~~pcvp~~  164 (237)
                      . .....+...++..+..+|.....  +..+++++.+.  .+.++++|.+      ++.+|.--             ++ 
T Consensus        69 ~~~~~~~~~~~i~~~~~~~~~~~~~--p~~~i~i~~~~--~G~~~~ld~~~~~~~~e~~V~~~d-------------~~-  130 (160)
T 2icg_A           69 KRGLSAASIPDVKFATEQARTFGDI--NKEMIMIKNSG--YGSIFSIDTSIIGSEGEPVIVETN-------------LS-  130 (160)
T ss_dssp             TTGGGCCSTTBHHHHHHHHHHHTSS--CTTEEEEEECS--TTCEEEEEEEEECTTSSEEEEEEC-------------TT-
T ss_pred             cCCcccCCCccchhhhHHHHHhcCC--CCCEEEEEecC--CCCEEEEEecccCCCCCCeEEEEE-------------Cc-
Confidence            1 01112334567777777765444  45678887643  3478888875      23333211             10 


Q ss_pred             hhcccCCCCCCcccchHHHHHHHHhh
Q 026498          165 LIALGHGCNSDQQQDGMLLWLEEHGR  190 (237)
Q Consensus       165 ~i~~~~d~~~~~~~ds~~~WLe~~~~  190 (237)
                         ..|+.+....++||.+||++...
T Consensus       131 ---~~~~~~~~~ia~sF~efL~~l~~  153 (160)
T 2icg_A          131 ---FKDNTEKKVVANSFGEFLLEEIE  153 (160)
T ss_dssp             ---HHHHCCCEEEESSHHHHHHHHHH
T ss_pred             ---ccCCCCcEEEeCCHHHHHHHHHH
Confidence               00111114679999999987654

>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1

Probab=98.97  E-value=8.5e-09  Score=83.58  Aligned_cols=118  Identities=18%  Similarity=0.242  Sum_probs=79.0

Q ss_pred             hhcCCCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHHHHHH
Q 026498           30 ATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEI  109 (237)
Q Consensus        30 ~~L~~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~~~~~  109 (237)
                      ....+|+|+++|+++|+.||++||.+||.|++.+||....              |..+|+.....     ..++..+..+
T Consensus        18 ~~~~~~~see~I~~~E~~Lgi~lP~dYk~fLk~~ngg~~~--------------~~~i~~i~~~~-----~~i~~~~~~~   78 (153)
T 2prv_A           18 AIFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLF--------------GVLVLGYNFDH-----ASVVNRTNEY   78 (153)
T ss_dssp             CEECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHHCSEEET--------------TEEECCCCSSS-----CHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHhCCceec--------------eEEEEeccCCC-----ccHHHHHHHH
Confidence            4567899999999999999999999999999999997642              22222211111     4566667777


Q ss_pred             HhhcCCCCCCeeeEEEeccCCCcceEEEecC-----CCeeEEeeeccCCCCcccccCccchhcccCCCCCCcccchHHHH
Q 026498          110 RRHLDFPGRDKYVVVAFSSTYSEKFFFLNCT-----NGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLW  184 (237)
Q Consensus       110 r~~~~~~g~~~~i~~~as~~~~~~~~~ld~~-----~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~~~~~~~ds~~~W  184 (237)
                      |.....  +..+++++.   .++.++++|.+     ++.+|+ .+.  ..+                 .....|+||.+|
T Consensus        79 ~~~~~~--p~~~i~i~~---~g~~~~~ld~~~~~~~~~pv~~-wd~--~~~-----------------~~~~iA~sF~ef  133 (153)
T 2prv_A           79 KEHYGL--TDGLVVIED---VDYFAYCLDTNKMKDGECPVVE-WDR--VIG-----------------YQDTVADSFIEF  133 (153)
T ss_dssp             HHHSCC--CTTEEEEEE---CSSEEEEEETTSCBTTBCCEEE-EET--TTE-----------------EEEEEESSHHHH
T ss_pred             HHhcCC--CCcEEEEec---CCCcEEEEeccccCCCCCCEEE-EEc--cCC-----------------ceEEEcCCHHHH
Confidence            776443  556788842   34578888986     244444 210  001                 014679999999


Q ss_pred             HHHHhhh
Q 026498          185 LEEHGRR  191 (237)
Q Consensus       185 Le~~~~~  191 (237)
                      |......
T Consensus       134 L~~~i~~  140 (153)
T 2prv_A          134 FYNKIQE  140 (153)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9876544

>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1

Probab=98.53  E-value=8.2e-07  Score=71.12  Aligned_cols=110  Identities=8%  Similarity=0.158  Sum_probs=64.7

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCHHHHHHhHHh-CCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHHHHHHHh
Q 026498           33 RKGASEADIQQLEKSLKVKLPVPTRILYRFC-DGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRR  111 (237)
Q Consensus        33 ~~gate~eI~~~E~~lg~~LP~~lr~lyr~h-nGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~~~~~r~  111 (237)
                      ..++|+++|.++|+.||++||++||.+++-+ ||.               +|+...+.. ...  -+-..+...+...++
T Consensus        19 ~~~~t~e~I~~~E~~Lgi~fP~dYk~fl~~~~~~~---------------~g~~~~~~~-~~~--~~~~~i~~~~~~~~~   80 (135)
T 2pag_A           19 LELPDEDQLVEIEEQLFINIPFVFKEFLLTVSDVV---------------YGSLEPVTV-TDP--QSHTYLPEVCATAWD   80 (135)
T ss_dssp             CCCCCHHHHHHHHHHHTCCCCHHHHHHHHHHTTCC---------------BTTBCBCBS-SCT--TSTTBHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCcc---------------cCcceeeee-ccC--CcccchHHHHHHHHH
Confidence            4555999999999999999999999999975 332               122100000 000  000124444433343


Q ss_pred             hcCCCCCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCcccccCccchhcccCCCC--CCcccchHHHHHHHH
Q 026498          112 HLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCN--SDQQQDGMLLWLEEH  188 (237)
Q Consensus       112 ~~~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~~--~~~~~ds~~~WLe~~  188 (237)
                      . ..  +..+++++ +.  .+.++.+| .+|+++.-                     .|+..  .+..++||..|+++.
T Consensus        81 ~-~l--p~~~ipf~-~~--~Gn~iCid-~~g~Vv~w---------------------dhe~~~~~~~~~~s~~~w~~~~  131 (135)
T 2pag_A           81 L-GV--PRELIPIC-QD--GEDYYCVE-EDGTVLLW---------------------SAEEELVTEESWESVWHWARDV  131 (135)
T ss_dssp             H-TC--CTTSEEEE-EE--TTEEEEEC-TTSCEEEE---------------------CC---CEEEEEESSHHHHHHHT
T ss_pred             c-CC--CCCeEEEE-EC--CCCEEEEC-CCCEEEEE---------------------EccCCccCCccCccHHHHHHHH
Confidence            2 22  45678888 32  57778888 56665421                     12222  346689999999875

>3ffv_A Protein SYD; membrane, translocon, secyeg, nanodisc, cell inner membrane, cell membrane, protein binding; 2.00A {Escherichia coli}

Probab=88.75  E-value=2.4  Score=35.28  Aligned_cols=114  Identities=10%  Similarity=0.159  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHH------HHHHH
Q 026498           37 SEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIME------TKEIR  110 (237)
Q Consensus        37 te~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~------~~~~r  110 (237)
                      ...++..+|+.|+++|.++++++|    |.-...      .-.+-++|+.    ..-+..+|=++..+-      ...++
T Consensus        58 ~~~~f~~vE~aLei~lh~~i~~fy----~~~~ag------dm~a~~~~~~----l~LlQvWs~~Df~rLQeNliGHl~mq  123 (181)
T 3ffv_A           58 GEQNVNAVERAFDIVIQPTIHTFY----TTQFAG------DMHAQFGDIK----LTLLQTWSEDDFRRVQENLIGHLVTQ  123 (181)
T ss_dssp             SCSSCHHHHHHSSCCCCHHHHHHT----SSEECC------CEEEEETTEE----EEECCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHhcCcccHHHHHHH----hhhhcC------CCcceeCCce----eEEEecCCHHHHHHHHHHHHHHHHHH
Confidence            345899999999999999999999    322221      1245555532    112233455555443      33445


Q ss_pred             hhcCCCCCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCcccccCccchhcccCCCCCCcccchHHHHHHHH
Q 026498          111 RHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEH  188 (237)
Q Consensus       111 ~~~~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~~~~~~~ds~~~WLe~~  188 (237)
                      +++-. .+.-+|++.   .....++-+|-.+|.+..=+  +   |.               -.+...++|+.++|+..
T Consensus       124 rrLK~-~PT~FIg~t---d~e~~lIsv~N~sGeV~LE~--~---G~---------------~~~~vLA~sLaeFL~~L  177 (181)
T 3ffv_A          124 KRLKL-PPTLFIATL---EEELEVISVCNLSGEVCKET--L---GT---------------RKRTHLASNLAEFLNQL  177 (181)
T ss_dssp             HHTTC-CCEEEEEEC---SSTTEEEEEETTTCCEEEEE--T---TS---------------SCEEEEESSHHHHHHHC
T ss_pred             HHhCC-CCcEEEEEe---cCCCcEEEEECCCCeEEEEe--C---CC---------------CcceehhhCHHHHHHhC
Confidence            55543 122234433   23356777777788765311  0   11               02568899999888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d2prva1	152	d.369.1.1 (A:1-152) Uncharacterized protein YobK {	3e-10
d2icga1	158	d.369.1.1 (A:1-158) Uncharacterized protein Lin291	8e-04

>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus subtilis [TaxId: 1423]} Length = 152

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Uncharacterized protein YobK
species: Bacillus subtilis [TaxId: 1423]

 Score = 54.7 bits (131), Expect = 3e-10
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 21/104 (20%)

Query: 14  WDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDF 73
           + +++N++ EN   A     +GAS  +I ++E++L+  LP   +                
Sbjct: 3   YSKVENFINENKQNA--IFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGA-------- 52

Query: 74  ESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
                 G + G    G+         + ++  T E + H     
Sbjct: 53  ------GGLFGVLVLGY-----NFDHASVVNRTNEYKEHYGLTD 85

>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]} Length = 158

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Uncharacterized protein Lin2918
species: Listeria innocua [TaxId: 1642]

 Score = 36.6 bits (84), Expect = 8e-04
 Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 15/100 (15%)

Query: 28  AKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSF 87
                    +   I+  + +L  + P   ++              F  I   GL      
Sbjct: 18  ITFHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFNGVSFYGISKRGL------ 71

Query: 88  YGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFS 127
                      +  +   T++ R   D     + +++  S
Sbjct: 72  -------SAASIPDVKFATEQARTFGDIN--KEMIMIKNS 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d2prva1	152	Uncharacterized protein YobK {Bacillus subtilis [T	99.63
d2icga1	158	Uncharacterized protein Lin2918 {Listeria innocua	99.29
d2paga1	135	Hypothetical protein PSPTO5518 {Pseudomonas syring	98.37

>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Uncharacterized protein YobK
species: Bacillus subtilis [TaxId: 1423]

Probab=99.63  E-value=1.3e-15  Score=121.39  Aligned_cols=139  Identities=19%  Similarity=0.320  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHhhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeecccee
Q 026498           13 CWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLV   92 (237)
Q Consensus        13 ~W~rie~wL~~~~P~~~~~L~~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~   92 (237)
                      +|.|||+|+.++-|...  |++|||+++|+++|++||++||++||.||+.|||....              |..+|.   
T Consensus         2 ~~~~i~~~i~~~~~~~~--~~~gas~e~I~~~E~~Lg~~LP~~Yk~fL~~~ng~~~~--------------~~~~~~---   62 (152)
T d2prva1           2 IYSKVENFINENKQNAI--FTEGASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLF--------------GVLVLG---   62 (152)
T ss_dssp             HHHHHHHHHHHHGGGCE--ECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHHCSEEET--------------TEEECC---
T ss_pred             hHHHHHHHHHHcccccc--cCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHcCCcccc--------------CceEee---
Confidence            69999999999999655  89999999999999999999999999999999997543              222322   


Q ss_pred             eeeecChHHHHHHHHHHHhhcCCCCCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCcccccCccchhcccCCC
Q 026498           93 NVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGC  172 (237)
Q Consensus        93 ~~~LLpL~~i~~~~~~~r~~~~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~  172 (237)
                        ...+...++..+...++....  +..++++..   .++..+++|..++.          .|+      .+++...|+.
T Consensus        63 --~~~~~~~~i~~~~~~~~~~~~--p~~~i~~~~---~gg~~~~~d~~~~~----------~~~------~~V~~~~~~~  119 (152)
T d2prva1          63 --YNFDHASVVNRTNEYKEHYGL--TDGLVVIED---VDYFAYCLDTNKMK----------DGE------CPVVEWDRVI  119 (152)
T ss_dssp             --CCSSSCHHHHHHHHHHHHSCC--CTTEEEEEE---CSSEEEEEETTSCB----------TTB------CCEEEEETTT
T ss_pred             --ccccchHHHHhhHHHHHhccC--CCceEEEEc---CCCCEEEEEeccCC----------CCC------CCeEEEecCC
Confidence              223445666777777766654  444666643   24667777776654          121      1122222222


Q ss_pred             C-CCcccchHHHHHHHHhhhhh
Q 026498          173 N-SDQQQDGMLLWLEEHGRRLH  193 (237)
Q Consensus       173 ~-~~~~~ds~~~WLe~~~~~L~  193 (237)
                      + ....++||.+||+..+++.+
T Consensus       120 ~~~~~iA~SF~efL~~~~~~~~  141 (152)
T d2prva1         120 GYQDTVADSFIEFFYNKIQEAK  141 (152)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHH
T ss_pred             CeEEEhhcCHHHHHHHHHHHhh
Confidence            2 46789999999999988754

>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]}

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Uncharacterized protein Lin2918
species: Listeria innocua [TaxId: 1642]

Probab=99.29  E-value=1.3e-11  Score=98.41  Aligned_cols=146  Identities=10%  Similarity=0.114  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHhhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccce
Q 026498           12 RCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHL   91 (237)
Q Consensus        12 ~~W~rie~wL~~~~P~~~~~L~~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~   91 (237)
                      .+-++|++.+.++.+..+  .++|||+++|+++|++||++||++||.|++.|||+......     -+|+...       
T Consensus         4 ~~~e~~~~~~~~~~~~~~--~~~~at~E~I~~~E~~LG~~lP~~Yr~fL~~~ng~~~~~~~-----i~~i~~~-------   69 (158)
T d2icga1           4 SFLEEVDRLITLSGITFH--ASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFNGVS-----FYGISKR-------   69 (158)
T ss_dssp             HHHHHHHHHHHHCCSCCB--CCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHTSSEEETTEE-----ECBCCTT-------
T ss_pred             HHHHHHHHHHHhcCCccc--cCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHcCCcccCCce-----eeccccc-------
Confidence            456788888888877663  78999999999999999999999999999999998654211     0111100       


Q ss_pred             eeeeecChHHHHHHHHHHHhhcCCCCCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCcccccCccchhcc---
Q 026498           92 VNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIAL---  168 (237)
Q Consensus        92 ~~~~LLpL~~i~~~~~~~r~~~~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~pcvp~~~i~~---  168 (237)
                       .........++..+..+++....  +..+++++.+  .++.++++|.+++.         .+++     | .++..   
T Consensus        70 -~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~~~--~~G~~~c~D~~~~~---------~~~e-----~-~v~~~~~~  129 (158)
T d2icga1          70 -GLSAASIPDVKFATEQARTFGDI--NKEMIMIKNS--GYGSIFSIDTSIIG---------SEGE-----P-VIVETNLS  129 (158)
T ss_dssp             -GGGCCSTTBHHHHHHHHHHHTSS--CTTEEEEEEC--STTCEEEEEEEEEC---------TTSS-----E-EEEEECTT
T ss_pred             -cccccccchHHHHHHHHHhccCC--CcCEEEEEEc--CCCCEEEEeecccc---------cCCC-----C-eEEEEecc
Confidence             12334455666667777776544  4567887763  34667777764432         2222     0 01100   


Q ss_pred             -cCCCCCCcccchHHHHHHHHhhh
Q 026498          169 -GHGCNSDQQQDGMLLWLEEHGRR  191 (237)
Q Consensus       169 -~~d~~~~~~~ds~~~WLe~~~~~  191 (237)
                       ..+-.....|+||.+||.+.++.
T Consensus       130 ~~~~~~~~~iA~sF~efl~~~~~~  153 (158)
T d2icga1         130 FKDNTEKKVVANSFGEFLLEEIEL  153 (158)
T ss_dssp             HHHHCCCEEEESSHHHHHHHHHHH
T ss_pred             cCCCcceeehhhCHHHHHHHHHHH
Confidence             00012345799999999987653

>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518 {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Hypothetical protein PSPTO5518
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.37  E-value=2.2e-06  Score=66.91  Aligned_cols=110  Identities=6%  Similarity=0.132  Sum_probs=65.9

Q ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHHHHHHHhhcC
Q 026498           35 GASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLD  114 (237)
Q Consensus        35 gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~~~~~r~~~~  114 (237)
                      +||+++|+++|++||++||++||.+++..+|.....        ..+.+.         ..-.+-..+.+.+..+++. .
T Consensus        21 ~pt~e~I~~~E~~lg~~~P~~yk~fl~~~g~~~~g~--------~e~~~~---------~d~~s~~~l~e~~~~~~~~-g   82 (135)
T d2paga1          21 LPDEDQLVEIEEQLFINIPFVFKEFLLTVSDVVYGS--------LEPVTV---------TDPQSHTYLPEVCATAWDL-G   82 (135)
T ss_dssp             CCCHHHHHHHHHHHTCCCCHHHHHHHHHHTTCCBTT--------BCBCBS---------SCTTSTTBHHHHHHHHHHH-T
T ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHHhCCeeece--------EEEeec---------CCCCccccHHHHHHHHHhh-C
Confidence            459999999999999999999999999988764431        111111         0112233344444444442 3


Q ss_pred             CCCCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCcccccCccchhcccCCCCCCcccchHHHHHHH
Q 026498          115 FPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEE  187 (237)
Q Consensus       115 ~~g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~~~~~~~ds~~~WLe~  187 (237)
                      .  +..++++|..   ++.++++|. +|+++.-...   +|.                .......||.+|+++
T Consensus        83 l--p~~~I~i~~~---~g~~ycld~-~g~V~~w~h~---~~~----------------~~ee~w~sf~~W~~~  130 (135)
T d2paga1          83 V--PRELIPICQD---GEDYYCVEE-DGTVLLWSAE---EEL----------------VTEESWESVWHWARD  130 (135)
T ss_dssp             C--CTTSEEEEEE---TTEEEEECT-TSCEEEECC------C----------------EEEEEESSHHHHHHH
T ss_pred             C--CCceEEEEEC---CCceEEEec-CCCEEEEeCC---CCC----------------cccchhHhHHHHHHH
Confidence            3  4568888852   355677765 4555431110   010                023457899999975