Citrus Sinensis ID: 026500

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
MALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYKLHFGFLNLVELRRIIAACLMAGH
ccccccccccccEEEEEEEEcccccccccccccccccccHHHHHHHHHcccccEEEEccccccccccccccccccccccccccEEEEcccccccccccccEEEccHHHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEcccHHHHHHHHccccccccccccccHHHHHHHcHHHHHHHcccccccEEEccc
cccHHccccccEEEEEEEEccccEEEcccHHccccccHHHHHHHHHHHcccccEEEEcccccccccccccEEEEEccccccccEEEEcccccHHHcccccEEccHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHcccHHHHHHcccHcHccccccccEEEEEEcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccc
malhpelaqEGAIQIVIIKTTgdkilsqpladiggkglfTKEIDEALINSQIDIAVHsmkdvptylpektilpcnlqreDVRDAFISLSAASlaelpagsivgtaSLRRKSqilhrypslkvMENFRGNVQTRLRKLNERVVQATLLALAGlkrlsmtenvtnilsvddmlpaVAQGAIGiacrsndekmvpfttHSQASILNTfncsgklcyklhFGFLNLVELRRIIAACLMAGH
malhpelaqeGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAAslaelpagsivgtaslrrKSQILhrypslkvmeNFRGNVQTRLRKLNERVVQATLLAlaglkrlsmtENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYKLHFGFLNLVELRRIIAACLMAGH
MALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIslsaaslaelPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYKLHFGFLNLVELRRIIAACLMAGH
**********GAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYKLHFGFLNLVELRRIIAACLM***
*ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYKLHFGFLNLVELRRIIAACLMA**
MALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYKLHFGFLNLVELRRIIAACLMAGH
**LHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYKLHFGFLNLVELRRIIAACLMAG*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYKLHFGFLNLVELRRIIAACLMAGH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query237 2.2.26 [Sep-21-2011]
Q43082369 Porphobilinogen deaminase N/A no 0.814 0.523 0.875 5e-95
Q43316382 Porphobilinogen deaminase yes no 0.801 0.497 0.836 4e-89
Q6H6D2358 Porphobilinogen deaminase yes no 0.805 0.533 0.781 1e-82
Q1QQP5316 Porphobilinogen deaminase yes no 0.759 0.569 0.607 1e-53
Q3SVF3316 Porphobilinogen deaminase yes no 0.759 0.569 0.580 3e-52
Q3A009315 Porphobilinogen deaminase yes no 0.767 0.577 0.529 4e-51
A1B853313 Porphobilinogen deaminase yes no 0.746 0.565 0.567 3e-49
Q747I1318 Porphobilinogen deaminase yes no 0.767 0.572 0.534 4e-48
A1AUE7310 Porphobilinogen deaminase yes no 0.784 0.6 0.513 2e-47
A1WVT9310 Porphobilinogen deaminase yes no 0.789 0.603 0.5 6e-47
>sp|Q43082|HEM3_PEA Porphobilinogen deaminase, chloroplastic OS=Pisum sativum GN=HEMC PE=1 SV=1 Back     alignment and function desciption
 Score =  347 bits (889), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 169/193 (87%), Positives = 182/193 (94%)

Query: 1   MALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMK 60
           MA H ELA+EGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALIN  IDIAVHSMK
Sbjct: 84  MASHTELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMK 143

Query: 61  DVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSL 120
           DVPTYLPE+TILPCNL REDVRDAFISLSAASLA+LPAGS++GTASLRRKSQILHRYPSL
Sbjct: 144 DVPTYLPEETILPCNLPREDVRDAFISLSAASLADLPAGSVIGTASLRRKSQILHRYPSL 203

Query: 121 KVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIG 180
            V +NFRGNVQTRLRKL+E VV+ATLLALAGLKRL+MTENVT+ LS+DDMLPAVAQGAIG
Sbjct: 204 TVQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQGAIG 263

Query: 181 IACRSNDEKMVPF 193
           IACRSND+KM  +
Sbjct: 264 IACRSNDDKMAEY 276
Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
Pisum sativum (taxid: 3888)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 1
>sp|Q43316|HEM3_ARATH Porphobilinogen deaminase, chloroplastic OS=Arabidopsis thaliana GN=HEMC PE=1 SV=1 Back     alignment and function description
>sp|Q6H6D2|HEM3_ORYSJ Porphobilinogen deaminase, chloroplastic OS=Oryza sativa subsp. japonica GN=HEMC PE=2 SV=1 Back     alignment and function description
>sp|Q1QQP5|HEM3_NITHX Porphobilinogen deaminase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|Q3SVF3|HEM3_NITWN Porphobilinogen deaminase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|Q3A009|HEM3_PELCD Porphobilinogen deaminase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|A1B853|HEM3_PARDP Porphobilinogen deaminase OS=Paracoccus denitrificans (strain Pd 1222) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|Q747I1|HEM3_GEOSL Porphobilinogen deaminase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|A1AUE7|HEM3_PELPD Porphobilinogen deaminase OS=Pelobacter propionicus (strain DSM 2379) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|A1WVT9|HEM3_HALHL Porphobilinogen deaminase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=hemC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
255558669 372 porphobilinogen deaminase, putative [Ric 0.814 0.518 0.886 1e-95
356538495 350 PREDICTED: porphobilinogen deaminase, ch 0.814 0.551 0.886 4e-95
363807442 350 uncharacterized protein LOC100812733 [Gl 0.814 0.551 0.891 2e-94
255634492 350 unknown [Glycine max] 0.814 0.551 0.880 2e-94
359807499 356 uncharacterized protein LOC100779132 [Gl 0.814 0.542 0.870 3e-94
224094087 363 predicted protein [Populus trichocarpa] 0.814 0.531 0.891 8e-94
2495180 369 RecName: Full=Porphobilinogen deaminase, 0.814 0.523 0.875 3e-93
357474093 369 Porphobilinogen deaminase [Medicago trun 0.814 0.523 0.875 3e-93
296080867328 unnamed protein product [Vitis vinifera] 0.814 0.588 0.870 4e-93
224081346 363 predicted protein [Populus trichocarpa] 0.814 0.531 0.865 3e-91
>gi|255558669|ref|XP_002520359.1| porphobilinogen deaminase, putative [Ricinus communis] gi|223540457|gb|EEF42025.1| porphobilinogen deaminase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 171/193 (88%), Positives = 185/193 (95%)

Query: 1   MALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMK 60
           MA H ELA+EGAIQIVIIKTTGDKIL+QPLADIGGKGLFTKEIDEALIN +IDIAVHSMK
Sbjct: 87  MAKHSELAEEGAIQIVIIKTTGDKILTQPLADIGGKGLFTKEIDEALINGEIDIAVHSMK 146

Query: 61  DVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSL 120
           DVPTYLPEKTILPCNL REDVRDAFISLSA+SLAELP+GS++GTASLRRKSQILHRYPSL
Sbjct: 147 DVPTYLPEKTILPCNLPREDVRDAFISLSASSLAELPSGSVIGTASLRRKSQILHRYPSL 206

Query: 121 KVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIG 180
            V+ENFRGNVQTRLRKLNE VVQATLLALAGLKRL+MTENVT++LS+DDMLPAVAQGAIG
Sbjct: 207 SVLENFRGNVQTRLRKLNEGVVQATLLALAGLKRLNMTENVTSVLSIDDMLPAVAQGAIG 266

Query: 181 IACRSNDEKMVPF 193
           IACRSND+KM  +
Sbjct: 267 IACRSNDDKMANY 279

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356538495|ref|XP_003537739.1| PREDICTED: porphobilinogen deaminase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|363807442|ref|NP_001242644.1| uncharacterized protein LOC100812733 [Glycine max] gi|255635113|gb|ACU17914.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255634492|gb|ACU17610.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359807499|ref|NP_001240888.1| uncharacterized protein LOC100779132 [Glycine max] gi|255640018|gb|ACU20300.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224094087|ref|XP_002310073.1| predicted protein [Populus trichocarpa] gi|222852976|gb|EEE90523.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|2495180|sp|Q43082.1|HEM3_PEA RecName: Full=Porphobilinogen deaminase, chloroplastic; Short=PBG; AltName: Full=Hydroxymethylbilane synthase; Short=HMBS; AltName: Full=Pre-uroporphyrinogen synthase; Flags: Precursor gi|313724|emb|CAA51820.1| hydroxymethylbilane synthase [Pisum sativum] Back     alignment and taxonomy information
>gi|357474093|ref|XP_003607331.1| Porphobilinogen deaminase [Medicago truncatula] gi|355508386|gb|AES89528.1| Porphobilinogen deaminase [Medicago truncatula] Back     alignment and taxonomy information
>gi|296080867|emb|CBI18797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224081346|ref|XP_002306378.1| predicted protein [Populus trichocarpa] gi|222855827|gb|EEE93374.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
TAIR|locus:2150758382 HEMC "hydroxymethylbilane synt 0.801 0.497 0.8 2.1e-75
TIGR_CMR|SPO_3649319 SPO_3649 "porphobilinogen deam 0.780 0.579 0.542 6.2e-46
UNIPROTKB|P06983313 hemC [Escherichia coli K-12 (t 0.776 0.587 0.481 4.8e-39
TIGR_CMR|CHY_1208311 CHY_1208 "porphobilinogen deam 0.759 0.578 0.470 3.5e-36
TIGR_CMR|BA_4696309 BA_4696 "porphobilinogen deami 0.843 0.647 0.428 1.5e-35
TIGR_CMR|CJE_0649307 CJE_0649 "porphobilinogen deam 0.746 0.576 0.415 9.5e-34
TIGR_CMR|ECH_0701298 ECH_0701 "porphobilinogen deam 0.864 0.687 0.404 1.2e-33
CGD|CAL0000854340 HEM3 [Candida albicans (taxid: 0.729 0.508 0.446 2.5e-33
UNIPROTKB|O94048340 HEM3 "Porphobilinogen deaminas 0.729 0.508 0.446 2.5e-33
TIGR_CMR|APH_0746304 APH_0746 "porphobilinogen deam 0.763 0.595 0.428 1.1e-32
TAIR|locus:2150758 HEMC "hydroxymethylbilane synthase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 152/190 (80%), Positives = 164/190 (86%)

Query:     4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
             HPEL ++GAI I IIKTTGDKILSQPLADIGGKGLFTKEIDEALIN  IDIAVHSMKDVP
Sbjct:   100 HPELVEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVP 159

Query:    64 TYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVM 123
             TYLPEKTILPCNL REDVRDAFI          PAGS+VGTASLRRKSQILH+YP+L V 
Sbjct:   160 TYLPEKTILPCNLPREDVRDAFICLTAATLAELPAGSVVGTASLRRKSQILHKYPALHVE 219

Query:   124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
             ENFRGNVQTRL KL    VQATLLALAGLKRLSMTENV +ILS+D+MLPAVAQGAIGIAC
Sbjct:   220 ENFRGNVQTRLSKLQGGKVQATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIAC 279

Query:   184 RSNDEKMVPF 193
             R++D+KM  +
Sbjct:   280 RTDDDKMATY 289
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0018160 "peptidyl-pyrromethane cofactor linkage" evidence=IEA
GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IEP;RCA
GO:0048046 "apoplast" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006744 "ubiquinone biosynthetic process" evidence=RCA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009814 "defense response, incompatible interaction" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0030154 "cell differentiation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0004418 "hydroxymethylbilane synthase activity" evidence=IDA;IMP
GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=TAS
TIGR_CMR|SPO_3649 SPO_3649 "porphobilinogen deaminase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P06983 hemC [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1208 CHY_1208 "porphobilinogen deaminase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4696 BA_4696 "porphobilinogen deaminase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0649 CJE_0649 "porphobilinogen deaminase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0701 ECH_0701 "porphobilinogen deaminase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
CGD|CAL0000854 HEM3 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|O94048 HEM3 "Porphobilinogen deaminase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0746 APH_0746 "porphobilinogen deaminase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q98EI7HEM3_RHILO2, ., 5, ., 1, ., 6, 10.51540.79320.6103yesno
Q43316HEM3_ARATH2, ., 5, ., 1, ., 6, 10.83680.80160.4973yesno
Q6H6D2HEM3_ORYSJ2, ., 5, ., 1, ., 6, 10.78120.80590.5335yesno
Q82WS2HEM3_NITEU2, ., 5, ., 1, ., 6, 10.53190.78900.6071yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.610.914
3rd Layer2.5.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_VII000271
hydroxymethylbilane synthase (EC-2.5.1.61) (363 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00020758
hypothetical protein (430 aa)
• •• •• 0.990
eugene3.00150799
glutamate-1-semialdehyde 2,1-aminomutase (EC-5.4.3.8) (479 aa)
• ••  • 0.970
gw1.40.619.1
hypothetical protein (272 aa)
•  • •• 0.959
gw1.148.3.1
uroporphyrin-III C-methyltransferase (EC-2.1.1.107) (328 aa)
•••  •• 0.959
gw1.13426.3.1
Delta-aminolevulinic acid dehydratase (293 aa)
• • ••• 0.949
gw1.16698.2.1
Delta-aminolevulinic acid dehydratase (254 aa)
• • ••• 0.929
gw1.I.4290.1
glutamyl-tRNA reductase (EC-1.2.1.70) (471 aa)
• •   • 0.926
estExt_Genewise1_v1.C_LG_II0707
glutamyl-tRNA reductase (EC-1.2.1.70) (469 aa)
• •   • 0.923
gw1.IX.2784.1
glutamyl-tRNA reductase (EC-1.2.1.70) (503 aa)
• •   • 0.899
gw1.182.88.1
uroporphyrinogen decarboxylase (EC-4.1.1.37) (357 aa)
• ••• • 0.848

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
PLN02691351 PLN02691, PLN02691, porphobilinogen deaminase 1e-132
PRK00072295 PRK00072, hemC, porphobilinogen deaminase; Reviewe 1e-100
cd00494292 cd00494, HMBS, Hydroxymethylbilane synthase (HMBS) 3e-98
pfam01379213 pfam01379, Porphobil_deam, Porphobilinogen deamina 5e-97
COG0181307 COG0181, HemC, Porphobilinogen deaminase [Coenzyme 2e-86
TIGR00212292 TIGR00212, hemC, porphobilinogen deaminase 1e-82
PRK01066231 PRK01066, PRK01066, porphobilinogen deaminase; Pro 3e-21
>gnl|CDD|215373 PLN02691, PLN02691, porphobilinogen deaminase Back     alignment and domain information 
 Score =  375 bits (965), Expect = e-132
 Identities = 157/193 (81%), Positives = 175/193 (90%), Gaps = 1/193 (0%)

Query: 1   MALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMK 60
            A HPELA+EGA++IVIIKTTGDKIL QPLADIGGKGLFTKEID+AL++ +IDIAVHSMK
Sbjct: 66  KAAHPELAEEGALEIVIIKTTGDKILDQPLADIGGKGLFTKEIDDALLSGRIDIAVHSMK 125

Query: 61  DVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSL 120
           DVPTYLPE TILPCNL REDVRDAFISL A SLAELPAGS+VGTASLRR+SQILH+YP L
Sbjct: 126 DVPTYLPEGTILPCNLPREDVRDAFISLKAKSLAELPAGSVVGTASLRRQSQILHKYPHL 185

Query: 121 KVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIG 180
           KV  NFRGNVQTRLRKL E VV ATLLALAGLKRL MTE+ T+ILS D+MLPAVAQGAIG
Sbjct: 186 KV-VNFRGNVQTRLRKLQEGVVDATLLALAGLKRLDMTEHATSILSTDEMLPAVAQGAIG 244

Query: 181 IACRSNDEKMVPF 193
           IACR++D+KM+ +
Sbjct: 245 IACRTDDDKMLEY 257

Length = 351
>gnl|CDD|234612 PRK00072, hemC, porphobilinogen deaminase; Reviewed Back     alignment and domain information
>gnl|CDD|238276 cd00494, HMBS, Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12 Back     alignment and domain information
>gnl|CDD|216465 pfam01379, Porphobil_deam, Porphobilinogen deaminase, dipyromethane cofactor binding domain Back     alignment and domain information
>gnl|CDD|223259 COG0181, HemC, Porphobilinogen deaminase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|232876 TIGR00212, hemC, porphobilinogen deaminase Back     alignment and domain information
>gnl|CDD|167150 PRK01066, PRK01066, porphobilinogen deaminase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 237
COG0181307 HemC Porphobilinogen deaminase [Coenzyme metabolis 100.0
TIGR00212292 hemC porphobilinogen deaminase. Biosynthesis of co 100.0
cd00494292 HMBS Hydroxymethylbilane synthase (HMBS), also kno 100.0
PRK00072295 hemC porphobilinogen deaminase; Reviewed 100.0
PLN02691351 porphobilinogen deaminase 100.0
PF01379215 Porphobil_deam: Porphobilinogen deaminase, dipyrom 100.0
PRK01066231 porphobilinogen deaminase; Provisional 100.0
KOG2892320 consensus Porphobilinogen deaminase [Coenzyme tran 100.0
TIGR00363258 lipoprotein, YaeC family. This family of putative 96.2
PRK11063271 metQ DL-methionine transporter substrate-binding s 96.1
PRK11260266 cystine transporter subunit; Provisional 95.68
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 95.6
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 95.49
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 95.37
TIGR01729300 taurine_ABC_bnd taurine ABC transporter, periplasm 95.32
PRK15007243 putative ABC transporter arginine-biding protein; 95.01
cd00134218 PBPb Bacterial periplasmic transport systems use m 94.89
PRK15010260 ABC transporter lysine/arginine/ornithine binding 94.29
TIGR03427328 ABC_peri_uca ABC transporter periplasmic binding p 93.96
PRK09861272 cytoplasmic membrane lipoprotein-28; Provisional 93.68
COG0834275 HisJ ABC-type amino acid transport/signal transduc 93.3
PRK09959 1197 hybrid sensory histidine kinase in two-component r 93.28
PF14503232 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B. 93.15
PRK09959 1197 hybrid sensory histidine kinase in two-component r 93.08
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 92.59
PRK11480320 tauA taurine transporter substrate binding subunit 92.1
TIGR01728288 SsuA_fam ABC transporter, substrate-binding protei 91.65
TIGR02995275 ectoine_ehuB ectoine/hydroxyectoine ABC transporte 91.32
PRK10859 482 membrane-bound lytic transglycosylase F; Provision 90.85
PF13379252 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_ 90.54
COG0715335 TauA ABC-type nitrate/sulfonate/bicarbonate transp 90.36
PF09084216 NMT1: NMT1/THI5 like; InterPro: IPR015168 This ent 89.27
PRK00489287 hisG ATP phosphoribosyltransferase; Reviewed 88.72
PRK11553314 alkanesulfonate transporter substrate-binding subu 88.63
PF02621251 VitK2_biosynth: Menaquinone biosynthesis; InterPro 86.68
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 85.24
cd08429204 PBP2_NhaR The C-terminal substrate binding domain 81.15
cd08449197 PBP2_XapR The C-terminal substrate binding domain 80.7
cd08467200 PBP2_SyrM The C-terminal substrate binding of LysR 80.56
cd08412198 PBP2_PAO1_like The C-terminal substrate-binding do 80.23
>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.6e-83  Score=581.89  Aligned_cols=211  Identities=49%  Similarity=0.794  Sum_probs=203.7

Q ss_pred             CCCCCCCCCCcEEEEEEeecCcccCCccccccCcccccHHHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCC
Q 026500            2 ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDV   81 (237)
Q Consensus         2 ~~~p~l~~~~~~eiv~i~T~GD~~~~~~L~~iggkGlFtkeLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dp   81 (237)
                      +.||++    +|||++|+|+||+++|+||+++||||+||||||+||++|+||+|||||||||+++|+||.++||++|+||
T Consensus        27 ~~~p~~----~~ei~~i~T~GD~i~d~pL~~iGgkGlFtkEle~all~g~~DiAVHSlKDvP~~~p~gL~laai~~R~dp  102 (307)
T COG0181          27 AAYPDL----EVEIVTIKTKGDRILDKPLSKIGGKGLFTKELEQALLEGEIDIAVHSLKDVPTELPEGLVLAAIPEREDP  102 (307)
T ss_pred             HhCCCc----eEEEEEEecccchhccchHHHcCCcEEEHHHHHHHHHcCCCCEEEeecccCCccCCCCceEEEecCCCCh
Confidence            467877    7999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEeCCCCCCccCCCCCeeecCChhHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcc
Q 026500           82 RDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENV  161 (237)
Q Consensus        82 rD~LV~~~~~~l~~Lp~ga~IGTSS~RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i  161 (237)
                      ||+||++++.+|.+||+||+|||||+||+|||+++|||++|+ ++||||+|||+||++|+|||||||+|||+|||+++++
T Consensus       103 rDalVs~~~~~l~~LP~Ga~VGTSSlRR~aql~~~rPdl~i~-~lRGNVdTRL~KL~~g~yDAIILA~AGL~RLgl~~~~  181 (307)
T COG0181         103 RDALVSRDGYDLEELPEGAVVGTSSLRRQAQLKALRPDLKIE-PLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLENRI  181 (307)
T ss_pred             hheEEECCCCchhhCCCCCccccchHHHHHHHHHhCCCCeEE-eccCcHHHHHHHhhcCCccHHHHHHHHHHhcCCcccc
Confidence            999999999999999999999999999999999999999998 9999999999999999999999999999999999999


Q ss_pred             eeeecCCCCCCCCCCceEEEEEecCchhhhhhhcccccccccccccccchhHHHHHHHHhhhh
Q 026500          162 TNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYKLHFGFLNLVE  224 (237)
Q Consensus       162 ~~~l~~~~~lPA~GQGalave~R~~d~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  224 (237)
                      +++|+|+.|+|||||||||||||.+|+++.++|+.++       +-.+..|+..||.|++-|+
T Consensus       182 ~~~l~p~~~~PA~gQGal~ie~R~~d~~~~~ll~~i~-------~~~t~~~v~aERa~l~~L~  237 (307)
T COG0181         182 TEILDPEEFLPAPGQGALAIECRAGDEKVLELLAELN-------DEDTRICVTAERAFLRELE  237 (307)
T ss_pred             eeecChhhcCCCCCCceEEEEEecCcHHHHHHHHhcc-------CchHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999998887       4447889999999999876

>TIGR00212 hemC porphobilinogen deaminase Back     alignment and domain information
>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12 Back     alignment and domain information
>PRK00072 hemC porphobilinogen deaminase; Reviewed Back     alignment and domain information
>PLN02691 porphobilinogen deaminase Back     alignment and domain information
>PF01379 Porphobil_deam: Porphobilinogen deaminase, dipyromethane cofactor binding domain; InterPro: IPR022417 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] Back     alignment and domain information
>PRK01066 porphobilinogen deaminase; Provisional Back     alignment and domain information
>KOG2892 consensus Porphobilinogen deaminase [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR00363 lipoprotein, YaeC family Back     alignment and domain information
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Back     alignment and domain information
>PRK11260 cystine transporter subunit; Provisional Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional Back     alignment and domain information
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region Back     alignment and domain information
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional Back     alignment and domain information
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional Back     alignment and domain information
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family Back     alignment and domain information
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein Back     alignment and domain information
>PRK10859 membrane-bound lytic transglycosylase F; Provisional Back     alignment and domain information
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A Back     alignment and domain information
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins Back     alignment and domain information
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Back     alignment and domain information
>PF02621 VitK2_biosynth: Menaquinone biosynthesis; InterPro: IPR003773 This entry describes proteins of unknown function, which appear to be putative periplasmic binding proteins Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information
>cd08429 PBP2_NhaR The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08449 PBP2_XapR The C-terminal substrate binding domain of LysR-type transcriptional regulator XapR involved in xanthosine catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08467 PBP2_SyrM The C-terminal substrate binding of LysR-type symbiotic regulator SyrM, which activates expression of nodulation gene NodD3, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08412 PBP2_PAO1_like The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
4htg_A320 Porphobilinogen Deaminase From Arabidopsis Thaliana 5e-85
1pda_A313 Structure Of Porphobilinogen Deaminase Reveals A Fl 9e-42
2ypn_A313 Hydroxymethylbilane Synthase Length = 313 9e-42
1ypn_A313 Reduced Form Hydroxymethylbilane Synthase (K59q Mut 2e-41
1ah5_A313 Reduced Form Selenomethionine-Labelled Hydroxymethy 5e-40
3ecr_A364 Structure Of Human Porphobilinogen Deaminase Length 7e-32
3eq1_A361 The Crystal Structure Of Human Porphobilinogen Deam 3e-31
>pdb|4HTG|A Chain A, Porphobilinogen Deaminase From Arabidopsis Thaliana Length = 320 Back     alignment and structure 
Iteration: 1

 Score =  310 bits (794), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 152/190 (80%), Positives = 164/190 (86%)
Query: 4   HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
           HPEL ++GAI I IIKTTGDKILSQPLADIGGKGLFTKEIDEALIN  IDIAVHSMKDVP
Sbjct: 38  HPELVEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVP 97
Query: 64  TYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVM 123
           TYLPEKTILPCNL REDVRDAFI          PAGS+VGTASLRRKSQILH+YP+L V 
Sbjct: 98  TYLPEKTILPCNLPREDVRDAFICLTAATLAELPAGSVVGTASLRRKSQILHKYPALHVE 157
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
           ENFRGNVQTRL KL    VQATLLALAGLKRLSMTENV +ILS+D+MLPAVAQGAIGIAC
Sbjct: 158 ENFRGNVQTRLSKLQGGKVQATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIAC 217
Query: 184 RSNDEKMVPF 193
           R++D+KM  +
Sbjct: 218 RTDDDKMATY 227
>pdb|1PDA|A Chain A, Structure Of Porphobilinogen Deaminase Reveals A Flexible Multidomain Polymerase With A Single Catalytic Site Length = 313 Back     alignment and structure
>pdb|2YPN|A Chain A, Hydroxymethylbilane Synthase Length = 313 Back     alignment and structure
>pdb|1YPN|A Chain A, Reduced Form Hydroxymethylbilane Synthase (K59q Mutant) Crystal Structure After 2 Hours In A Flow Cell Determined By Time-Resolved Laue Diffraction Length = 313 Back     alignment and structure
>pdb|1AH5|A Chain A, Reduced Form Selenomethionine-Labelled Hydroxymethylbilane Synthase Determined By Mad Length = 313 Back     alignment and structure
>pdb|3ECR|A Chain A, Structure Of Human Porphobilinogen Deaminase Length = 364 Back     alignment and structure
>pdb|3EQ1|A Chain A, The Crystal Structure Of Human Porphobilinogen Deaminase At 2.8a Resolution Length = 361 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
1gtk_A313 Porphobilinogen deaminase; lyase, biosynthesis of 1e-104
3ecr_A364 Porphobilinogen deaminase; heme biosynthesis, porp 1e-100
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A* Length = 313 Back     alignment and structure
 Score =  303 bits (779), Expect = e-104
 Identities = 95/190 (50%), Positives = 123/190 (64%), Gaps = 5/190 (2%)

Query: 1   MALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMK 60
           MA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMK
Sbjct: 28  MASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMK 83

Query: 61  DVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSL 120
           DVP   P+   L    +RED RDAF+S +  SL  LPAGSIVGT+SLRR+ Q+  R P L
Sbjct: 84  DVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDL 143

Query: 121 KVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIG 180
            +  + RGNV TRL KL+     A +LA+AGLKRL +   +   L  +  LPAV QGA+G
Sbjct: 144 II-RSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVG 202

Query: 181 IACRSNDEKM 190
           I CR +D + 
Sbjct: 203 IECRLDDSRT 212
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* Length = 364 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query237
1gtk_A313 Porphobilinogen deaminase; lyase, biosynthesis of 100.0
3ecr_A364 Porphobilinogen deaminase; heme biosynthesis, porp 100.0
3kzg_A237 Arginine 3RD transport system periplasmic binding 96.85
3qax_A268 Probable ABC transporter arginine-binding protein; 96.54
3del_B242 Arginine binding protein; alpha and beta protein ( 96.53
3tql_A227 Arginine-binding protein; transport and binding pr 96.29
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 95.97
3k4u_A245 Binding component of ABC transporter; structural g 95.82
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 95.4
3un6_A341 Hypothetical protein saouhsc_00137; structural gen 95.35
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 94.99
1zbm_A280 Hypothetical protein AF1704; alpha-beta protein, s 94.85
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 94.85
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 94.8
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 94.72
2yln_A283 Putative ABC transporter, periplasmic binding Pro 94.7
3ksx_A324 Nitrate transport protein; SSUA, alkanesulfonate-b 94.66
2czl_A272 Hypothetical protein TTHA1568; conserved hypotheti 94.41
3qsl_A346 Putative exported protein; unknown, structural gen 93.79
4eq9_A246 ABC transporter substrate-binding protein-amino A 93.71
1xt8_A292 Putative amino-acid transporter periplasmic solut 93.4
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 93.36
4h5g_A243 Amino acid ABC superfamily ATP binding cassette tr 93.34
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 93.31
3uif_A348 Sulfonate ABC transporter, periplasmic sulfonate- 92.84
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 92.61
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 92.51
3hv1_A268 Polar amino acid ABC uptake transporter substrate 92.33
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 92.25
2vha_A287 Periplasmic binding transport protein; periplasmic 92.14
2q88_A257 EHUB, putative ABC transporter amino acid-binding 91.68
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 91.62
4gvo_A243 LMO2349 protein; structural genomics, IDP05245, L- 91.5
1xs5_A241 29 kDa protein, membrane lipoprotein TPN32; peripl 91.32
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 90.8
3ix1_A302 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine 89.08
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 89.01
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 87.2
2x7q_A321 Ca3427, possible thiamine biosynthesis enzyme; unk 86.26
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 85.97
2ozz_A231 Hypothetical protein YHFZ; alpha-beta structure, s 85.83
2g29_A 417 Nitrate transport protein NRTA; solute-binding pro 84.55
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 83.31
2x26_A308 Periplasmic aliphatic sulphonates-binding protein; 83.21
2pfz_A301 Putative exported protein; extracytoplasmic solute 82.9
3hn0_A283 Nitrate transport protein; ABC transporter, struct 81.04
2pfy_A301 Putative exported protein; extracytoplasmic solute 80.45
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A* Back     alignment and structure
Probab=100.00  E-value=2.7e-83  Score=587.38  Aligned_cols=210  Identities=45%  Similarity=0.669  Sum_probs=186.1

Q ss_pred             CCCCCCCCCcEEEEEEeecCcccCCccccccCcccccHHHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCC
Q 026500            3 LHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVR   82 (237)
Q Consensus         3 ~~p~l~~~~~~eiv~i~T~GD~~~~~~L~~iggkGlFtkeLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dpr   82 (237)
                      .||++    +||+++|+|+||+++++||+++||||+||||||+||++|+||||||||||||+++|+||.++||++|+|||
T Consensus        30 ~~p~~----~~ei~~i~T~GD~i~d~pL~~iGgkGlFtkELe~aLl~g~iDiAVHSlKDvPt~lp~gl~l~av~~Redpr  105 (313)
T 1gtk_A           30 SHPGL----VVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPR  105 (313)
T ss_dssp             HCTTC----EEEEEECC-----------------CTTHHHHHHHHHTTSCSEEEEEGGGSCSCCCTTEEEEEECCCCCCC
T ss_pred             hCCCC----cEEEEeeecCCcccccccHHHcCCccchHHHHHHHHHcCCCcEEEecCCCCCCCCCCCcEEEEEecCCCcc
Confidence            47888    79999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeCCCCCCccCCCCCeeecCChhHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcce
Q 026500           83 DAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVT  162 (237)
Q Consensus        83 D~LV~~~~~~l~~Lp~ga~IGTSS~RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i~  162 (237)
                      |+||++++.++++||+|++|||||+||++||+++|||++|+ ++||||+|||+||++|+|||||||+|||+|||+.++++
T Consensus       106 DalV~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPdl~i~-~lRGNV~TRL~KL~~g~~DaiiLA~AGL~RLgl~~~i~  184 (313)
T 1gtk_A          106 DAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIR-SLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIR  184 (313)
T ss_dssp             EEEECSSCSSGGGCCTTCEEECCCHHHHHHHHHHCTTSEEE-CCCSCHHHHHHHHHTTSCSEEEEEHHHHHHTTCGGGCS
T ss_pred             eEEEECCCCChhhCCCCCEEecCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHhhCCCCCEEEHhhhHHHHcCCccccc
Confidence            99999998899999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCCCCCceEEEEEecCchhhhhhhcccccccccccccccchhHHHHHHHHhhhh
Q 026500          163 NILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYKLHFGFLNLVE  224 (237)
Q Consensus       163 ~~l~~~~~lPA~GQGalave~R~~d~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  224 (237)
                      ++|++++|+|||||||||||||++|+++.++|+.++       +=.+..|+..||.||+.|+
T Consensus       185 ~~l~~~~~lPA~gQGalaIe~r~~d~~~~~ll~~l~-------d~~t~~~~~aERa~l~~L~  239 (313)
T 1gtk_A          185 AALPPEISLPAVGQGAVGIECRLDDSRTRELLAALN-------HHETALRVTAERAMNTRLE  239 (313)
T ss_dssp             EECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGGC-------CHHHHHHHHHHHHHHHHHT
T ss_pred             eeeChhhcCCCcCCceEEEEEccCcHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999998887       4347889999999999886
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1 Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A* Back     alignment and structure
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica} Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus} Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A Back     alignment and structure
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1 Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Back     alignment and structure
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 Back     alignment and structure
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP} Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Back     alignment and structure
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis} Back     alignment and structure
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 237
d1pdaa1217 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydr 4e-45
>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 217 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  148 bits (374), Expect = 4e-45
 Identities = 93/189 (49%), Positives = 122/189 (64%), Gaps = 5/189 (2%)

Query: 2   ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKD 61
           A HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKD
Sbjct: 27  ASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKD 82

Query: 62  VPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLK 121
           VP   P+   L    +RED RDAF+S +  SL  LPAGSIVGT+SLRR+ Q+  R P   
Sbjct: 83  VPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPD-L 141

Query: 122 VMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGI 181
           ++ + RGNV TRL KL+     A +LA+AGLKRL +   +   L  +  LPAV QGA+GI
Sbjct: 142 IIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGI 201

Query: 182 ACRSNDEKM 190
            CR +D + 
Sbjct: 202 ECRLDDSRT 210

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query237
d1pdaa1217 Porphobilinogen deaminase (hydroxymethylbilane syn 100.0
d2ozza1228 Hypothetical protein YhfZ {Shigella flexneri [TaxI 95.96
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 94.52
d1xs5a_240 Putative lipoprotein (NlpA family) {Treponema pall 93.72
d1p99a_255 Putative lipoprotein (NlpA family) {Staphylococcus 92.63
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 92.45
d2czla1270 Hypothetical protein TTHA1568 {Thermus thermophilu 92.01
>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-77  Score=522.72  Aligned_cols=190  Identities=49%  Similarity=0.741  Sum_probs=176.3

Q ss_pred             CCCCCCCCCcEEEEEEeecCcccCCccccccCcccccHHHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCC
Q 026500            3 LHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVR   82 (237)
Q Consensus         3 ~~p~l~~~~~~eiv~i~T~GD~~~~~~L~~iggkGlFtkeLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dpr   82 (237)
                      .||++    ++|+++|+|+||++++.||+++||||+||+|||++|++|+|||||||+||||+++|+|+.++|+++|+|||
T Consensus        28 ~~p~~----~~ei~~i~T~GD~~~~~~l~~~ggkg~Ftkele~~Ll~~~iDiAVHS~KDlP~~~~~~l~i~a~~~R~d~r  103 (217)
T d1pdaa1          28 SHPGL----VVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPR  103 (217)
T ss_dssp             HCTTC----EEEEEECCCHHHHC---------CCCTTTHHHHHHHHTTSCSEEEEEGGGSCSCCCTTEEEEEECCCCCCC
T ss_pred             hCCCC----cEEEEEEeccCCccccccccccchhHHHHHHHHHHHHcCccceehhhhcccccccCCccccccccccCCcc
Confidence            47877    79999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeCCCCCCccCCCCCeeecCChhHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcce
Q 026500           83 DAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVT  162 (237)
Q Consensus        83 D~LV~~~~~~l~~Lp~ga~IGTSS~RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i~  162 (237)
                      |+||++++.++++||+|++|||||+||++||+++|||++|+ ++||||+|||+||++|+|||||||+|||+|||+.++++
T Consensus       104 D~li~~~~~~l~~l~~~~~IGTsS~RR~aql~~~~p~l~~~-~iRGNv~TRl~Kl~~g~~DaiILA~AGL~RL~l~~~i~  182 (217)
T d1pdaa1         104 DAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIR-SLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIR  182 (217)
T ss_dssp             EEEECSSCSSTTTSCTTCEEECCCHHHHHHHHHHCTTSEEE-CCCSCHHHHHHHHHTTSCSEEEEEHHHHHHTTCGGGCS
T ss_pred             hhccccCcCCHhhCCCCCEecccchhHHHHHHHhCCCCcee-ecccchhhHHHHhhccCcCEEEeehhHHhhcCcchhee
Confidence            99999999999999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCCCCCceEEEEEecCchhhhhhhccc
Q 026500          163 NILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHS  197 (237)
Q Consensus       163 ~~l~~~~~lPA~GQGalave~R~~d~~~~~~l~~~  197 (237)
                      ++|++++|+||||||+||||||++|.++.++++.+
T Consensus       183 ~~l~~~~~~PA~gQGaiaIe~r~~d~~~~~il~~i  217 (217)
T d1pdaa1         183 AALPPEISLPAVGQGAVGIECRLDDSRTRELLAAL  217 (217)
T ss_dssp             EECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGG
T ss_pred             EEcChhhcCChHhhhheEEEEcCCCHHHHHHHhcC
Confidence            99999999999999999999999999999998753
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]} Back     information, alignment and structure
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2czla1 c.94.1.1 (A:3-272) Hypothetical protein TTHA1568 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure