Citrus Sinensis ID: 026522

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCFYNVQYAL
Secondary Structure (PSIPRED)
ccccccEEccccccccHHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHcccccEEEEEcccccccccccccccHHHHHHccccEEEEcccccccccccccHHHHHHHHHHHHcccEEEEEEcccHHHHHcccHHHHHHHHHHHHHHccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHccccEEcccccccHHHHHHHHHHHcccccHHcccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccEcccHHHHHHHHHHHccccccccccEEEEEEccHHHHHHHHHHccccEEEEEccccccccEcccccccHHHHHHccccEEEEccHHHHHcccccHHHHHHHHHHHHHcccEEEEEEcccHHHHHcccHHHHHHHHHHHHHHcccccccEEEEEccHHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHHccEEEEcccccHHHHHHHHHHHcccEEEHHHcc
Coil and Loop (DISEMBL)
mgrkffvggnwkcngtpeEVKKIVSVLnegqvpssdvvevvvspPFVFLGLVKsslrpgfhvaaqncwvkkggaftGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGEtleqreagsTMDVVAAQTKAIADRVSSWSNIvlayepvwaigtgkvatpaqAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGcfynvqyal
Flexible Loop (DISEMBL)
mgrkffvggnwkcngtpeEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCFYNVQYAL
Low Complexity Region (SEG)
MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQvpssdvvevvvsppfvFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINvshvlvhlllsFGCFYNVQYAL
Disordered region (IsUnstruct)
****FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTG************FELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCFYNVQY**
Disordered Region (DISOPRED)
MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCFYNVQYAL
Disordered Region (DISEMBL)
MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCFYNVQYAL
Disordered Region (DISPRO)
**RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCFYNVQYAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCFYNVQYAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
P48495	254	Triosephosphate isomerase	N/A	no	0.902	0.842	0.841	1e-103
P48491	254	Triosephosphate isomerase	yes	no	0.902	0.842	0.841	1e-103
P12863	253	Triosephosphate isomerase	N/A	no	0.890	0.833	0.829	1e-101
P48494	253	Triosephosphate isomerase	yes	no	0.890	0.833	0.810	5e-99
P46226	253	Triosephosphate isomerase	N/A	no	0.890	0.833	0.777	4e-94
P21820	253	Triosephosphate isomerase	N/A	no	0.902	0.845	0.813	3e-89
P34937	253	Triosephosphate isomerase	N/A	no	0.890	0.833	0.777	6e-85
P48497	257	Triosephosphate isomerase	N/A	no	0.924	0.852	0.651	7e-77
P46225	298	Triosephosphate isomerase	N/A	no	0.894	0.711	0.609	2e-73
P48496	322	Triosephosphate isomerase	N/A	no	0.881	0.649	0.627	5e-73

>sp|P48495|TPIS_PETHY Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/215 (84%), Positives = 196/215 (91%), Gaps = 1/215 (0%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           MGRKFFVGGNWKCNGT EEVKKI++ LN   VPS DVVEVVVSPP+VFL LVK+ LRP F
Sbjct: 1   MGRKFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
           HVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L E NEFVGDKVAYALSQ
Sbjct: 61  HVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLE+RE+GSTMDVVAAQTKAIADRV  W+N+V+AYEPVWAIGTGKVA+PA
Sbjct: 121 GLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQEVH ELRKWL AN SPE+AA+TRIIYGG S+N
Sbjct: 181 QAQEVHAELRKWLAANVSPEVAASTRIIYGG-SVN 214

Petunia hybrida (taxid: 4102)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 1

>sp|P48491|TPIS_ARATH Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2

 Score =  373 bits (957), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/215 (84%), Positives = 197/215 (91%), Gaps = 1/215 (0%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           M RKFFVGGNWKCNGT EEVKKIV+ LNE QVPS DVVEVVVSPP+VFL LVKS+LR  F
Sbjct: 1   MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            VAAQNCWVKKGGAFTGE+SAEMLVNL+IPWVILGHSERR ILNE +EFVGDKVAYAL+Q
Sbjct: 61  FVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLE+REAGSTMDVVAAQTKAIADRV++WSN+V+AYEPVWAIGTGKVA+PA
Sbjct: 121 GLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQEVH ELRKWL  N S ++AA TRIIYGG S+N
Sbjct: 181 QAQEVHDELRKWLAKNVSADVAATTRIIYGG-SVN 214

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|P12863|TPIS_MAIZE Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/211 (82%), Positives = 190/211 (90%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           MGRKFFVGGNWKCNGT ++V+KIV  LNEGQVP SDVVEVVVSPP+VFL +VKS LR  F
Sbjct: 1   MGRKFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
           HVAAQNCWVKKGGAFTGE+SAEMLVNL +PWVILGHSERR +L E NEFVGDKVAYALSQ
Sbjct: 61  HVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLEQREAGSTMDVVAAQTKAIA+++  WSN+V+AYEPVWAIGTGKVATPA
Sbjct: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQEVH  LR WL  N SPE+A +TRIIYGG
Sbjct: 181 QAQEVHASLRDWLKTNASPEVAESTRIIYGG 211

Zea mays (taxid: 4577)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|P48494|TPIS_ORYSJ Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3

 Score =  360 bits (924), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 171/211 (81%), Positives = 189/211 (89%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           MGRKFFVGGNWKCNGT ++V KIV +LNEGQ+ S+DVVEVVVSPP+VFL +VKS LRP  
Sbjct: 1   MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEI 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L E NEFVGDKVAYALSQ
Sbjct: 61  QVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLEQRE+GSTMDVVAAQTKAI++R+  W+N+V+AYEPVWAIGTGKVATP 
Sbjct: 121 GLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPD 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQEVH  LRKWL AN S E+A +TRIIYGG
Sbjct: 181 QAQEVHDGLRKWLAANVSAEVAESTRIIYGG 211

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|P46226|TPIS_SECCE Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3

 Score =  343 bits (881), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 164/211 (77%), Positives = 183/211 (86%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           MGRKFFVGGNWKCNGT  +V+ IV+ LN GQ+ S DVVEVVVSPP+VFL  VK  LRP  
Sbjct: 1   MGRKFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEI 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L E +EFVG+KVAYAL+Q
Sbjct: 61  QVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLEQREAGSTM+VVA QTKAIAD++  W+N+V+AYEPVWAIGTGKVA+PA
Sbjct: 121 GLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQEVH  LR WL  N SPE+A +TRIIYGG
Sbjct: 181 QAQEVHANLRDWLKTNVSPEVAESTRIIYGG 211

Secale cereale (taxid: 4550)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|P21820|TPIS_COPJA Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1

 Score =  328 bits (840), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 175/215 (81%), Positives = 193/215 (89%), Gaps = 1/215 (0%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           MGRKFFVGGNWKCNGT EEVKKIV++LNE +VPS DVVEVVVSPP+VFL  VK+ LR  F
Sbjct: 1   MGRKFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
           HVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +LNE NEFVGDK AYALSQ
Sbjct: 61  HVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLEQREAGST+ VVAAQTKAIA++VS W+NIV+AYEPVWAIGTGKVA+PA
Sbjct: 121 GLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQEVHFELRKW+  N   ++A + RIIYGG S+N
Sbjct: 181 QAQEVHFELRKWIKENVGADVAGSVRIIYGG-SVN 214

Coptis japonica (taxid: 3442)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|P34937|TPIS_HORVU Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3

 Score =  313 bits (802), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 164/211 (77%), Positives = 182/211 (86%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           MGRKFFVGGNWKCNGT E+V+ IV  LN GQ+ S DVVEVVVSPP+VFL +VK+ LRP  
Sbjct: 1   MGRKFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEI 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            VAAQNCWVKKGGAFTGE+SAEML NL +PWVILGHSERR +L E +EFVG+KVAYAL+Q
Sbjct: 61  QVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLEQREAGSTM+VVA QTKAIA ++  WSN V+AYEPVWAIGTGKVATPA
Sbjct: 121 GLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQEVH  LR WL  N SPE+A +TRIIYGG
Sbjct: 181 QAQEVHANLRDWLKTNVSPEVAESTRIIYGG 211

Hordeum vulgare (taxid: 4513)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|P48497|TPIS_STELP Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1

 Score =  286 bits (733), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 144/221 (65%), Positives = 165/221 (74%), Gaps = 2/221 (0%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           MGRKFFVGGNWKCNGT E V KIV  LNE  + ++DVV VVVSPP+VFL    + L+   
Sbjct: 1   MGRKFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEI 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            VAAQNCWVKKGGAFTGE+SA+ML NL I WVILGHSERR +L E NEFVG K AYA S+
Sbjct: 61  QVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSE 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATP 179
           GL VIAC+GE LE+REAG T DV   Q K+ A      W N+V+AYEPVWAIGTGKVA+P
Sbjct: 121 GLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASP 180

Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVL 220
            QAQEVH  +R WL  N S E+A+ TRIIYGG S+N  + L
Sbjct: 181 EQAQEVHVAVRDWLKTNVSEEVASKTRIIYGG-SVNGGNSL 220

Stellaria longipes (taxid: 19744)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|P46225|TPIC_SECCE Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1

 Score =  275 bits (703), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/215 (60%), Positives = 163/215 (75%), Gaps = 3/215 (1%)

Query: 4   KFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVA 63
           KFFVGGNWKCNGT E + K+VS LN   + S   V+VVV+PPF+++  VKSSL     V+
Sbjct: 48  KFFVGGNWKCNGTKESISKLVSDLNAATLESD--VDVVVAPPFIYIDQVKSSLTDRIEVS 105

Query: 64  AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK 123
           AQN W+ KGGAFTGEISAE LV++   WVILGHSERR ++ E +EF+G K AYALSQ LK
Sbjct: 106 AQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLK 165

Query: 124 VIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
           V+AC+GE LE+REAG T DV   Q KA AD ++ W+N+V+AYEPVWAIGTGKVA+P QAQ
Sbjct: 166 VMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQ 225

Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGISINVSH 218
           EVH  +R WL  N S ++A+  RIIYGG S+N ++
Sbjct: 226 EVHAAVRDWLKTNVSADVASTVRIIYGG-SVNAAN 259

Secale cereale (taxid: 4550)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|P48496|TPIC_SPIOL Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1

 Score =  274 bits (700), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 133/212 (62%), Positives = 160/212 (75%), Gaps = 3/212 (1%)

Query: 4   KFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVA 63
           KFFVGGNWKCNGT E + K+VS LN   + +   V+VVV+PPFV++  VKSSL     ++
Sbjct: 72  KFFVGGNWKCNGTKESITKLVSDLNSATLEAD--VDVVVAPPFVYIDQVKSSLTGRVEIS 129

Query: 64  AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK 123
           AQNCW+ KGGAFTGEIS E L +L   WVILGHSERR ++ E NEF+G K AYAL+QG+ 
Sbjct: 130 AQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVG 189

Query: 124 VIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
           VIAC+GE LE+REAG T DV   Q KA AD + SW N+V+AYEPVWAIGTGKVA+P QAQ
Sbjct: 190 VIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQ 249

Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           EVH  +R WL  N S E+A+ TRIIYGG S+N
Sbjct: 250 EVHVAVRDWLKKNVSEEVASKTRIIYGG-SVN 280

Spinacia oleracea (taxid: 3562)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
255584863	254	triosephosphate isomerase, putative [Ric	0.890	0.830	0.876	1e-105
147784332	254	hypothetical protein VITISV_041523 [Viti	0.890	0.830	0.872	1e-103
390098824	254	triose phosphate isomerase cytosolic iso	0.890	0.830	0.857	1e-102
225449541	254	PREDICTED: triosephosphate isomerase, cy	0.890	0.830	0.867	1e-102
192910674	254	triose phosphate isomerase cytosolic iso	0.902	0.842	0.837	1e-102
297816838	254	predicted protein [Arabidopsis lyrata su	0.902	0.842	0.846	1e-102
1351279	254	RecName: Full=Triosephosphate isomerase,	0.902	0.842	0.841	1e-102
211906460	254	triosephosphate isomerase [Gossypium hir	0.890	0.830	0.848	1e-101
15233272	254	triosephosphate isomerase [Arabidopsis t	0.902	0.842	0.841	1e-101
414550	254	cytosolic triose phosphate isomerase [Ar	0.902	0.842	0.841	1e-101

>gi|255584863|ref|XP_002533147.1| triosephosphate isomerase, putative [Ricinus communis] gi|223527042|gb|EEF29228.1| triosephosphate isomerase, putative [Ricinus communis]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/211 (87%), Positives = 196/211 (92%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           M RKFFVGGNWKCNGT EEVKKIVS LNEG VPSSDVVEVV+SPPFVFL LVK SL+P F
Sbjct: 1   MARKFFVGGNWKCNGTSEEVKKIVSTLNEGHVPSSDVVEVVISPPFVFLPLVKDSLKPDF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
           HVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERRL+L+E NEFVGDKVAYALSQ
Sbjct: 61  HVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRLLLSESNEFVGDKVAYALSQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLEQREAGSTMDVVAAQTKAIA+RV  W+++VLAYEPVWAIGTGKVATPA
Sbjct: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIAERVKDWADVVLAYEPVWAIGTGKVATPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQEVHFELRKWL  NTS ++AA TRIIYGG
Sbjct: 181 QAQEVHFELRKWLKENTSSQVAATTRIIYGG 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784332|emb|CAN70587.1| hypothetical protein VITISV_041523 [Vitis vinifera]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/211 (87%), Positives = 197/211 (93%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           MGRKFFVGGNWKCNGT EEVKKIVS LN G+VPS DVVEVVVSPPFVFL LVKS+LRP F
Sbjct: 1   MGRKFFVGGNWKCNGTGEEVKKIVSTLNAGEVPSGDVVEVVVSPPFVFLPLVKSTLRPDF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
           HVAAQNCWVKKGGAFTGEISAEMLVNL IPWVI+GHSERRL+LNE NEFVG+KVAYALS+
Sbjct: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVIIGHSERRLLLNESNEFVGEKVAYALSK 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLEQRE+GSTM+VVAAQTKAIAD+VS+W+N+VLAYEPVWAIGTGKVATPA
Sbjct: 121 GLKVIACVGETLEQRESGSTMEVVAAQTKAIADKVSNWANVVLAYEPVWAIGTGKVATPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQEVH ELR W  ANTSPE+AA  RIIYGG
Sbjct: 181 QAQEVHSELRNWFQANTSPEVAATIRIIYGG 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|390098824|gb|AFL48185.1| triose phosphate isomerase cytosolic isoform-like protein [Capsicum annuum]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/211 (85%), Positives = 193/211 (91%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           MGRKFFVGGNWKCNGT +E+KKI+S LN GQVPS DVVEVVVSPPFVFL LVK+ LRP F
Sbjct: 1   MGRKFFVGGNWKCNGTSDEIKKIISTLNAGQVPSQDVVEVVVSPPFVFLPLVKNELRPDF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
           HVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L E NEFVGDKVAYALSQ
Sbjct: 61  HVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLEQRE+GSTMDVVAAQTKAIAD V  W+N+V+AYEPVWAIGTGKVATPA
Sbjct: 121 GLKVIACVGETLEQRESGSTMDVVAAQTKAIADLVKDWTNVVIAYEPVWAIGTGKVATPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQEVH ELRKWL AN S E+AA+TRIIYGG
Sbjct: 181 QAQEVHAELRKWLQANVSAEVAASTRIIYGG 211

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449541|ref|XP_002283693.1| PREDICTED: triosephosphate isomerase, cytosolic [Vitis vinifera] gi|296086243|emb|CBI31684.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/211 (86%), Positives = 196/211 (92%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           MGRKFFVGGNWKCNGT EEVKKIVS LN G+VPS DVVEVVVSPPFVFL LVKS+LRP F
Sbjct: 1   MGRKFFVGGNWKCNGTGEEVKKIVSTLNAGEVPSGDVVEVVVSPPFVFLPLVKSTLRPDF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
           HVAAQNCWVKKGGAFTGEISAEMLVNL IPWVI+GHSERRL+LNE NEFVG+KVAYALS+
Sbjct: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVIIGHSERRLLLNESNEFVGEKVAYALSK 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLEQRE+GSTM+VVAAQTKAIAD+VS+W+N+VLAYEPVWAIGTGKVATPA
Sbjct: 121 GLKVIACVGETLEQRESGSTMEVVAAQTKAIADKVSNWANVVLAYEPVWAIGTGKVATPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQEVH ELR W  AN SPE+AA  RIIYGG
Sbjct: 181 QAQEVHSELRNWFQANASPEVAATIRIIYGG 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910674|gb|ACF06445.1| triose phosphate isomerase cytosolic isoform [Elaeis guineensis]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/215 (83%), Positives = 199/215 (92%), Gaps = 1/215 (0%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           MGR+FFVGGNWKCNGT EEVKKIVS LN+GQVPSSDVVEVV+SPP+VFL LVKSSLRP F
Sbjct: 1   MGRRFFVGGNWKCNGTSEEVKKIVSTLNDGQVPSSDVVEVVISPPYVFLPLVKSSLRPDF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
           HVAAQNCWVKKGGAFTGE+SAEML N++I WVILGHSERRL+L E NEFVGDKVAYALSQ
Sbjct: 61  HVAAQNCWVKKGGAFTGEVSAEMLKNIDIHWVILGHSERRLLLGESNEFVGDKVAYALSQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLEQRE+G+TMDVVAAQTKAIA+R+S W+N+V+AYEPVWAIGTGKVATPA
Sbjct: 121 GLKVIACVGETLEQRESGATMDVVAAQTKAIAERISDWTNVVVAYEPVWAIGTGKVATPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQEVHF LRKWL  N S ++A +TRIIYGG S+N
Sbjct: 181 QAQEVHFALRKWLETNVSAQVAESTRIIYGG-SVN 214

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816838|ref|XP_002876302.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322140|gb|EFH52561.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/215 (84%), Positives = 198/215 (92%), Gaps = 1/215 (0%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           M RKFFVGGNWKCNGT EEVKKIV+ LNE QVPS DVVEVVVSPP+VFL LVKS+LR  F
Sbjct: 1   MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
           +VAAQNCWVKKGGA+TGE+SAEMLVNL+IPWVILGHSERR ILNE NEFVGDKVAYAL+Q
Sbjct: 61  YVAAQNCWVKKGGAYTGEVSAEMLVNLDIPWVILGHSERRAILNESNEFVGDKVAYALAQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLE+REAGSTMDVVAAQTKAIADRVS+WSN+V+AYEPVWAIGTGKVA+PA
Sbjct: 121 GLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVSNWSNVVIAYEPVWAIGTGKVASPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQEVH ELRKWL  N S ++AA TRIIYGG S+N
Sbjct: 181 QAQEVHDELRKWLAKNVSADVAATTRIIYGG-SVN 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1351279|sp|P48495.1|TPIS_PETHY RecName: Full=Triosephosphate isomerase, cytosolic; Short=TIM; Short=Triose-phosphate isomerase gi|602590|emb|CAA58230.1| triosephosphate isomerase [Petunia x hybrida]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/215 (84%), Positives = 196/215 (91%), Gaps = 1/215 (0%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           MGRKFFVGGNWKCNGT EEVKKI++ LN   VPS DVVEVVVSPP+VFL LVK+ LRP F
Sbjct: 1   MGRKFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
           HVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L E NEFVGDKVAYALSQ
Sbjct: 61  HVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLE+RE+GSTMDVVAAQTKAIADRV  W+N+V+AYEPVWAIGTGKVA+PA
Sbjct: 121 GLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQEVH ELRKWL AN SPE+AA+TRIIYGG S+N
Sbjct: 181 QAQEVHAELRKWLAANVSPEVAASTRIIYGG-SVN 214

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|211906460|gb|ACJ11723.1| triosephosphate isomerase [Gossypium hirsutum]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/211 (84%), Positives = 194/211 (91%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           MGRKFFVGGNWKCNGT EEV KIVS LN G+VPS DVVEVVVSPPFVFL LVK+SLRP F
Sbjct: 1   MGRKFFVGGNWKCNGTTEEVNKIVSTLNAGEVPSQDVVEVVVSPPFVFLPLVKTSLRPDF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
           HVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVI+GHSERRLIL E NEFV DKVAYAL+Q
Sbjct: 61  HVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVIIGHSERRLILKESNEFVADKVAYALAQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIAC+GETLEQREAGST+ VVA QTKAIA ++S+W+++VLAYEPVWAIGTGKVATPA
Sbjct: 121 GLKVIACIGETLEQREAGSTVAVVAEQTKAIAAKISNWTDVVLAYEPVWAIGTGKVATPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQEVH ELRKWL AN SPE+AA+TRIIYGG
Sbjct: 181 QAQEVHCELRKWLQANVSPEVAASTRIIYGG 211

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233272|ref|NP_191104.1| triosephosphate isomerase [Arabidopsis thaliana] gi|13432260|sp|P48491.2|TPIS_ARATH RecName: Full=Triosephosphate isomerase, cytosolic; Short=TIM; Short=Triose-phosphate isomerase gi|14030671|gb|AAK53010.1|AF375426_1 AT3g55440/T22E16_100 [Arabidopsis thaliana] gi|7076787|emb|CAB75902.1| cytosolic triosephosphatisomerase [Arabidopsis thaliana] gi|18491103|gb|AAL69518.1| AT3g55440/T22E16_100 [Arabidopsis thaliana] gi|332645863|gb|AEE79384.1| triosephosphate isomerase [Arabidopsis thaliana]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/215 (84%), Positives = 197/215 (91%), Gaps = 1/215 (0%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           M RKFFVGGNWKCNGT EEVKKIV+ LNE QVPS DVVEVVVSPP+VFL LVKS+LR  F
Sbjct: 1   MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            VAAQNCWVKKGGAFTGE+SAEMLVNL+IPWVILGHSERR ILNE +EFVGDKVAYAL+Q
Sbjct: 61  FVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLE+REAGSTMDVVAAQTKAIADRV++WSN+V+AYEPVWAIGTGKVA+PA
Sbjct: 121 GLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQEVH ELRKWL  N S ++AA TRIIYGG S+N
Sbjct: 181 QAQEVHDELRKWLAKNVSADVAATTRIIYGG-SVN 214

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414550|gb|AAA03449.1| cytosolic triose phosphate isomerase [Arabidopsis thaliana] gi|742408|prf||2009415A triose phosphate isomerase

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/215 (84%), Positives = 197/215 (91%), Gaps = 1/215 (0%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           M RKFFVGGNWKCNGT EEVKKIV+ LNE QVPS DVVEVVVSPP+VFL LVKS+LR  F
Sbjct: 1   MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            VAAQNCWVKKGGAFTGE+SAEMLVNL+IPWVILGHSERR ILNE +EFVGDKVAYAL+Q
Sbjct: 61  FVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLE+REAGSTMDVVAAQTKAIADRV++WSN+V+AYEPVWAIGTGKVA+PA
Sbjct: 121 GLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQEVH ELRKWL  N S ++AA TRIIYGG S+N
Sbjct: 181 QAQEVHDELRKWLAKNVSADVAATTRIIYGG-SVN 214

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2099906	254	TPI "triosephosphate isomerase	0.902	0.842	0.776	3e-85
TAIR|locus:2047072	315	TIM "triosephosphate isomerase	0.881	0.663	0.589	1.6e-61
ZFIN|ZDB-GENE-020416-4	248	tpi1b "triosephosphate isomera	0.877	0.838	0.538	2.9e-55
UNIPROTKB|P82204	248	Tpi "Triosephosphate isomerase	0.881	0.842	0.537	1.3e-54
UNIPROTKB|P60174	286	TPI1 "Triosephosphate isomeras	0.873	0.723	0.526	5.5e-54
UNIPROTKB|Q5E956	249	TPI1 "Triosephosphate isomeras	0.873	0.831	0.526	7e-54
UNIPROTKB|P00940	248	TPI1 "Triosephosphate isomeras	0.873	0.834	0.531	1.9e-53
UNIPROTKB|D0G7F6	248	TPI1 "Triosephosphate isomeras	0.873	0.834	0.521	1.9e-53
RGD|3896	249	Tpi1 "triosephosphate isomeras	0.873	0.831	0.535	3e-53
UNIPROTKB|P54714	249	TPI1 "Triosephosphate isomeras	0.873	0.831	0.521	3.8e-53

TAIR|locus:2099906 TPI "triosephosphate isomerase" [Arabidopsis thaliana (taxid:3702)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 167/215 (77%), Positives = 182/215 (84%)

Query:     1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
             M RKFFVGGNWKCNGT EEVKKIV+ LNE Q                FL LVKS+LR  F
Sbjct:     1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDF 60

Query:    61 HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
              VAAQNCWVKKGGAFTGE+SAEMLVNL+IPWVILGHSERR ILNE +EFVGDKVAYAL+Q
Sbjct:    61 FVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQ 120

Query:   121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
             GLKVIACVGETLE+REAGSTMDVVAAQTKAIADRV++WSN+V+AYEPVWAIGTGKVA+PA
Sbjct:   121 GLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPA 180

Query:   181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
             QAQEVH ELRKWL  N S ++AA TRIIYGG S+N
Sbjct:   181 QAQEVHDELRKWLAKNVSADVAATTRIIYGG-SVN 214

GO:0003824 "catalytic activity" evidence=IEA

GO:0004807 "triose-phosphate isomerase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0006096 "glycolysis" evidence=IC;RCA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0005507 "copper ion binding" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2047072 TIM "triosephosphate isomerase" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 125/212 (58%), Positives = 147/212 (69%)

Query:     4 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVA 63
             KFFVGGNWKCNGT + + K++S LN                   ++  VKSSL     ++
Sbjct:    65 KFFVGGNWKCNGTKDSIAKLISDLNSA--TLEADVDVVVSPPFVYIDQVKSSLTDRIDIS 122

Query:    64 AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK 123
              QN WV KGGAFTGEIS E L +L   WVILGHSERR ++ E +EF+G K AYALS+GL 
Sbjct:   123 GQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLG 182

Query:   124 VIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
             VIAC+GE LE+REAG T DV  AQ KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQ
Sbjct:   183 VIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQ 242

Query:   184 EVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
             EVH  +R WL  N S E+A+ TRIIYGG S+N
Sbjct:   243 EVHVAVRGWLKKNVSEEVASKTRIIYGG-SVN 273

GO:0003824 "catalytic activity" evidence=IEA

GO:0004807 "triose-phosphate isomerase activity" evidence=IEA;ISS;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0019253 "reductive pentose-phosphate cycle" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0006642 "triglyceride mobilization" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0019563 "glycerol catabolic process" evidence=IMP

GO:0032504 "multicellular organism reproduction" evidence=IMP

GO:0046166 "glyceraldehyde-3-phosphate biosynthetic process" evidence=IDA

GO:0080022 "primary root development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

ZFIN|ZDB-GENE-020416-4 tpi1b "triosephosphate isomerase 1b" [Danio rerio (taxid:7955)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 113/210 (53%), Positives = 139/210 (66%)

Query:     2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFH 61
             GRKFFVGGNWK NG  + ++++ + LN  +                +L   +S L P   
Sbjct:     3 GRKFFVGGNWKMNGDKKSIEELANTLNSAKLNPDTEVVCGAPTI--YLDYARSKLDPNID 60

Query:    62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
             VAAQNC+    GAFTGEIS  M+ +  + WVILGHSERR +  E +E +G KVA+AL  G
Sbjct:    61 VAAQNCYKVAKGAFTGEISPAMIKDCGVKWVILGHSERRHVFGESDELIGQKVAHALENG 120

Query:   122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQ 181
             L VIAC+GE L++REAG T  VV AQTK IAD V  WS +VLAYEPVWAIGTGK A+P Q
Sbjct:   121 LGVIACIGEKLDEREAGITEKVVFAQTKFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQ 180

Query:   182 AQEVHFELRKWLLANTSPEIAAATRIIYGG 211
             AQEVH +LR+WL  N S  +A + RIIYGG
Sbjct:   181 AQEVHDKLRQWLKTNVSEAVANSVRIIYGG 210

GO:0003824 "catalytic activity" evidence=IEA

GO:0004807 "triose-phosphate isomerase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

UNIPROTKB|P82204 Tpi "Triosephosphate isomerase" [Bombyx mori (taxid:7091)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 114/212 (53%), Positives = 138/212 (65%)

Query:     1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
             MGRKF VGGNWK NG   ++ +IV+ L +G                 +L  VK+ +    
Sbjct:     1 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAI--YLSYVKTIIPDNV 58

Query:    61 HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
              VAAQNCW    GAFTGEIS  M+ ++ + WVILGHSERR I  E +E V +KVA+AL  
Sbjct:    59 EVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALES 118

Query:   121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS-WSNIVLAYEPVWAIGTGKVATP 179
             GLKVIAC+GETLE+RE+G T +VV  Q KA+   +   W NIVLAYEPVWAIGTGK ATP
Sbjct:   119 GLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATP 178

Query:   180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
              QAQ+VH  LR WL AN S  ++ A RI YGG
Sbjct:   179 QQAQDVHHALRNWLSANVSGSVSDAVRIQYGG 210

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P60174 TPI1 "Triosephosphate isomerase" [Homo sapiens (taxid:9606)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 110/209 (52%), Positives = 137/209 (65%)

Query:     3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
             RKFFVGGNWK NG  + + +++  LN  +                ++   +  L P   V
Sbjct:    42 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAV 99

Query:    63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
             AAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+AL++GL
Sbjct:   100 AAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGL 159

Query:   123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
              VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct:   160 GVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 219

Query:   183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
             QEVH +LR WL +N S  +A +TRIIYGG
Sbjct:   220 QEVHEKLRGWLKSNVSDAVAQSTRIIYGG 248

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0019682 "glyceraldehyde-3-phosphate metabolic process" evidence=IEA

GO:0004807 "triose-phosphate isomerase activity" evidence=EXP;NAS;TAS

GO:0006094 "gluconeogenesis" evidence=IEA;TAS

GO:0006096 "glycolysis" evidence=IEA;TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q5E956 TPI1 "Triosephosphate isomerase" [Bos taurus (taxid:9913)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 110/209 (52%), Positives = 137/209 (65%)

Query:     3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
             RKFFVGGNWK NG    + ++++ LN  +                ++   +  L P   V
Sbjct:     5 RKFFVGGNWKMNGRKNNLGELINTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAV 62

Query:    63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
             AAQNC+    GAFTGEIS  M+ +L   WV+LGHSERR +  E +E +G KVA+AL++GL
Sbjct:    63 AAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGL 122

Query:   123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
              VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct:   123 GVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 182

Query:   183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
             QEVH +LR WL +N S  +A + RIIYGG
Sbjct:   183 QEVHEKLRGWLKSNVSDAVAQSARIIYGG 211

GO:0006096 "glycolysis" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0019682 "glyceraldehyde-3-phosphate metabolic process" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0004807 "triose-phosphate isomerase activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

UNIPROTKB|P00940 TPI1 "Triosephosphate isomerase" [Gallus gallus (taxid:9031)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 111/209 (53%), Positives = 138/209 (66%)

Query:     3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
             RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct:     4 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 61

Query:    63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
             AAQNC+    GAFTGEIS  M+ ++   WVILGHSERR +  E +E +G KVA+AL++GL
Sbjct:    62 AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGL 121

Query:   123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
              VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct:   122 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 181

Query:   183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
             QEVH +LR WL ++ S  +A +TRIIYGG
Sbjct:   182 QEVHEKLRGWLKSHVSDAVAQSTRIIYGG 210

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA;TAS

GO:0006096 "glycolysis" evidence=IEA;TAS

GO:0009790 "embryo development" evidence=IEA

GO:0019682 "glyceraldehyde-3-phosphate metabolic process" evidence=IEA

GO:0004807 "triose-phosphate isomerase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|D0G7F6 TPI1 "Triosephosphate isomerase" [Sus scrofa (taxid:9823)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 109/209 (52%), Positives = 137/209 (65%)

Query:     3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
             RKFFVGGNWK NG    + ++++ LN  +                ++   +  L P   V
Sbjct:     5 RKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTA--YIDFARQKLDPKIAV 62

Query:    63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
             AAQNC+    GAFTGEIS  M+ +L   WV+LGHSERR +  E +E +G KVA+AL++GL
Sbjct:    63 AAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGL 122

Query:   123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
              VIAC+GE L++REAG T  VV  QTK IAD V  W+ +VLAYEPVWAIGTGK ATP QA
Sbjct:   123 GVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQQA 182

Query:   183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
             QEVH +LR WL  + S  +A +TRIIYGG
Sbjct:   183 QEVHEKLRGWLKTHVSEAVAQSTRIIYGG 211

GO:0006096 "glycolysis" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0019682 "glyceraldehyde-3-phosphate metabolic process" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0004807 "triose-phosphate isomerase activity" evidence=IEA

RGD|3896 Tpi1 "triosephosphate isomerase 1" [Rattus norvegicus (taxid:10116)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 112/209 (53%), Positives = 135/209 (64%)

Query:     3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
             RKFFVGGNWK NG  + + +++  LN  +                ++   +  L P   V
Sbjct:     5 RKFFVGGNWKMNGRKKCLGELICTLNAAKLPADTEVVCAPPTA--YIDFARQKLDPKIAV 62

Query:    63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
             AAQNC+    GAFTGEIS  M+ +L   WV+LGHSERR I  E +E +G KV +ALS+GL
Sbjct:    63 AAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHIFGESDELIGQKVNHALSEGL 122

Query:   123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
              VIAC+GE L++REAG T  VV  QTKAIAD V  W  +VLAYEPVWAIGTGK ATP QA
Sbjct:   123 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEPVWAIGTGKTATPQQA 182

Query:   183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
             QEVH +LR WL  N S  +A  TRIIYGG
Sbjct:   183 QEVHEKLRGWLKCNVSEGVAQCTRIIYGG 211

GO:0004807 "triose-phosphate isomerase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005975 "carbohydrate metabolic process" evidence=IDA

GO:0006006 "glucose metabolic process" evidence=ISO

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA;TAS

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISO

GO:0008152 "metabolic process" evidence=ISO

GO:0009790 "embryo development" evidence=ISO

GO:0016853 "isomerase activity" evidence=ISO

GO:0019682 "glyceraldehyde-3-phosphate metabolic process" evidence=ISO

UNIPROTKB|P54714 TPI1 "Triosephosphate isomerase" [Canis lupus familiaris (taxid:9615)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 109/209 (52%), Positives = 137/209 (65%)

Query:     3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
             RKFFVGGNWK NG  + + ++++ LN  +                ++   +  L     V
Sbjct:     5 RKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTA--YIDFARQKLDAKIAV 62

Query:    63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
             AAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+AL++GL
Sbjct:    63 AAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGL 122

Query:   123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
              VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct:   123 GVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 182

Query:   183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
             QEVH +LR WL +N S  +A +TRIIYGG
Sbjct:   183 QEVHEKLRGWLKSNVSDAVAQSTRIIYGG 211

GO:0006096 "glycolysis" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0019682 "glyceraldehyde-3-phosphate metabolic process" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0004807 "triose-phosphate isomerase activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2QD07	TPIS_GORGO	5, ., 3, ., 1, ., 1	0.5502	0.8734	0.8313	N/A	no
Q6BMB8	TPIS_DEBHA	5, ., 3, ., 1, ., 1	0.5185	0.8945	0.8548	yes	no
Q29371	TPIS_PIG	5, ., 3, ., 1, ., 1	0.5406	0.8734	0.8346	yes	no
P82204	TPIS_BOMMO	5, ., 3, ., 1, ., 1	0.5660	0.8818	0.8427	N/A	no
Q27775	TPIS_SCHJA	5, ., 3, ., 1, ., 1	0.5283	0.8734	0.8214	N/A	no
P07669	TPIS_SCHPO	5, ., 3, ., 1, ., 1	0.5209	0.8987	0.8554	yes	no
P48501	TPIS_SCHMA	5, ., 3, ., 1, ., 1	0.5330	0.8734	0.8181	N/A	no
P21820	TPIS_COPJA	5, ., 3, ., 1, ., 1	0.8139	0.9029	0.8458	N/A	no
P00941	TPIS_LATCH	5, ., 3, ., 1, ., 1	0.5358	0.8734	0.8380	N/A	no
P00940	TPIS_CHICK	5, ., 3, ., 1, ., 1	0.5645	0.8734	0.8346	yes	no
Q7ZWN5	TPIS_XENLA	5, ., 3, ., 1, ., 1	0.5454	0.8734	0.8346	N/A	no
P60174	TPIS_HUMAN	5, ., 3, ., 1, ., 1	0.5598	0.8734	0.7237	yes	no
P60175	TPIS_PANTR	5, ., 3, ., 1, ., 1	0.5598	0.8734	0.8313	yes	no
Q589R5	TPIS_ORYLA	5, ., 3, ., 1, ., 1	0.5454	0.8734	0.8346	N/A	no
Q60HC9	TPIS_MACFA	5, ., 3, ., 1, ., 1	0.5598	0.8734	0.8313	N/A	no
P92119	TPIS_AEDTO	5, ., 3, ., 1, ., 1	0.5833	0.8016	0.9223	N/A	no
B0BM40	TPIS_XENTR	5, ., 3, ., 1, ., 1	0.5502	0.8734	0.8346	yes	no
Q5E956	TPIS_BOVIN	5, ., 3, ., 1, ., 1	0.5598	0.8734	0.8313	yes	no
Q5R928	TPIS_PONAB	5, ., 3, ., 1, ., 1	0.5598	0.8734	0.8313	yes	no
Q9HGY8	TPIS_ASPOR	5, ., 3, ., 1, ., 1	0.5255	0.8818	0.8326	yes	no
P46226	TPIS_SECCE	5, ., 3, ., 1, ., 1	0.7772	0.8902	0.8339	N/A	no
O77458	TPIS_DROYA	5, ., 3, ., 1, ., 1	0.5118	0.8818	0.8461	N/A	no
P12863	TPIS_MAIZE	5, ., 3, ., 1, ., 1	0.8293	0.8902	0.8339	N/A	no
P91919	TPIS_CULPI	5, ., 3, ., 1, ., 1	0.5677	0.8016	0.9223	N/A	no
P30741	TPIS_CULTA	5, ., 3, ., 1, ., 1	0.5924	0.8818	0.8461	N/A	no
P54714	TPIS_CANFA	5, ., 3, ., 1, ., 1	0.5550	0.8734	0.8313	yes	no
Q7S2Z9	TPIS_NEUCR	5, ., 3, ., 1, ., 1	0.5205	0.9071	0.8669	N/A	no
P15426	TPIS_MACMU	5, ., 3, ., 1, ., 1	0.5598	0.8734	0.8313	yes	no
Q7JNS1	TPIS_DROSI	5, ., 3, ., 1, ., 1	0.5118	0.8818	0.8461	N/A	no
P04828	TPIS_EMENI	5, ., 3, ., 1, ., 1	0.5446	0.8818	0.8393	yes	no
Q90XG0	TPISB_DANRE	5, ., 3, ., 1, ., 1	0.5571	0.8776	0.8387	yes	no
P00939	TPIS_RABIT	5, ., 3, ., 1, ., 1	0.5645	0.8734	0.8346	yes	no
Q10657	TPIS_CAEEL	5, ., 3, ., 1, ., 1	0.5545	0.8818	0.8461	yes	no
P17751	TPIS_MOUSE	5, ., 3, ., 1, ., 1	0.5550	0.8734	0.6923	yes	no
P48495	TPIS_PETHY	5, ., 3, ., 1, ., 1	0.8418	0.9029	0.8425	N/A	no
P48494	TPIS_ORYSJ	5, ., 3, ., 1, ., 1	0.8104	0.8902	0.8339	yes	no
P48497	TPIS_STELP	5, ., 3, ., 1, ., 1	0.6515	0.9240	0.8521	N/A	no
P48491	TPIS_ARATH	5, ., 3, ., 1, ., 1	0.8418	0.9029	0.8425	yes	no
P48493	TPIS_LACSA	5, ., 3, ., 1, ., 1	0.8289	0.6413	0.7794	N/A	no
P34937	TPIS_HORVU	5, ., 3, ., 1, ., 1	0.7772	0.8902	0.8339	N/A	no
P48499	TPIS_LEIME	5, ., 3, ., 1, ., 1	0.5233	0.8734	0.8247	N/A	no
Q96VN5	TPIS_PARBA	5, ., 3, ., 1, ., 1	0.5117	0.8818	0.8393	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.1.1	0.979
3rd Layer	5.3.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018496001	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (254 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00035677001	RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (401 aa)	•	•	•	•		•	•		0.998
	GSVIVG00035675001	RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (405 aa)	•	•	•	•		•	•		0.998
	GSVIVG00035097001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (342 aa)	•	•		•		•	•		0.975
	GSVIVG00020570001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (337 aa)	•	•		•		•	•		0.975
	GAPDH	SubName- Full=Chromosome chr17 scaffold_246, whole genome shotgun sequence; (317 aa)	•	•		•		•	•		0.972
	GSVIVG00002074001	SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (429 aa)	•	•		•		•	•		0.965
	GSVIVG00014624001	RecName- Full=Glucose-6-phosphate isomerase; EC=5.3.1.9; (340 aa)				•		•	•		0.962
	GSVIVG00002909001	SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (453 aa)	•					•	•		0.957
	GSVIVG00038435001	SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (620 aa)	•					•	•		0.951
	GSVIVG00026404001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (620 aa)	•					•	•		0.950

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
PLN02561	253	PLN02561, PLN02561, triosephosphate isomerase	1e-155
PTZ00333	255	PTZ00333, PTZ00333, triosephosphate isomerase; Pro	1e-108
cd00311	242	cd00311, TIM, Triosephosphate isomerase (TIM) is a	2e-99
PRK00042	250	PRK00042, tpiA, triosephosphate isomerase; Provisi	2e-91
pfam00121	242	pfam00121, TIM, Triosephosphate isomerase	2e-87
COG0149	251	COG0149, TpiA, Triosephosphate isomerase [Carbohyd	7e-82
PLN02429	315	PLN02429, PLN02429, triosephosphate isomerase	4e-80
PRK13962	645	PRK13962, PRK13962, bifunctional phosphoglycerate	7e-63
TIGR00419	205	TIGR00419, tim, triosephosphate isomerase	2e-56
PRK14566	260	PRK14566, PRK14566, triosephosphate isomerase; Pro	1e-51
PRK14565	237	PRK14565, PRK14565, triosephosphate isomerase; Pro	2e-42
PRK14567	253	PRK14567, PRK14567, triosephosphate isomerase; Pro	8e-39
PRK14905	355	PRK14905, PRK14905, triosephosphate isomerase/PTS	3e-29
PRK15492	260	PRK15492, PRK15492, triosephosphate isomerase; Pro	5e-23
PRK04302	223	PRK04302, PRK04302, triosephosphate isomerase; Pro	6e-09

>gnl|CDD|178175 PLN02561, PLN02561, triosephosphate isomerase

 Score =  430 bits (1108), Expect = e-155
 Identities = 184/211 (87%), Positives = 192/211 (90%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           M RKFFVGGNWKCNGT EEVKKIV+ LNE +VPS DVVEVVVSPPFVFL LVKS LRP F
Sbjct: 1   MARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPDF 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            VAAQNCWVKKGGAFTGEISAEMLVNL IPWVILGHSERR +L E NEFVGDKVAYALSQ
Sbjct: 61  QVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQ 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIACVGETLEQRE+GSTMDVVAAQTKAIAD+VS W+N+VLAYEPVWAIGTGKVATPA
Sbjct: 121 GLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWANVVLAYEPVWAIGTGKVATPA 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQEVH ELRKWL  N SPE+AA TRIIYGG
Sbjct: 181 QAQEVHDELRKWLHKNVSPEVAATTRIIYGG 211

Length = 253

>gnl|CDD|240365 PTZ00333, PTZ00333, triosephosphate isomerase; Provisional

 Score =  312 bits (802), Expect = e-108
 Identities = 123/218 (56%), Positives = 154/218 (70%), Gaps = 5/218 (2%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PG 59
           M RK FVGGNWKCNGT   +K+++   N+ +   ++V +VVV+PP + + LV+  L+   
Sbjct: 2   MKRKPFVGGNWKCNGTKASIKELIDSFNKLKFDPNNV-DVVVAPPSLHIPLVQEKLKNKN 60

Query: 60  FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
           F +++QN  +   GAFTGEISAEML +L I W ILGHSERR    E NE V  KV  AL 
Sbjct: 61  FKISSQNVSLTGSGAFTGEISAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALE 120

Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVA 177
            GLKVI C+GETLE+REAG T DV++ Q +AI  +VS  +W NIV+AYEPVWAIGTGKVA
Sbjct: 121 NGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEAWDNIVIAYEPVWAIGTGKVA 180

Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           TP QAQEVH  +RKWL      ++A ATRIIYGG S+N
Sbjct: 181 TPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGG-SVN 217

Length = 255

>gnl|CDD|238190 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate

 Score =  289 bits (741), Expect = 2e-99
 Identities = 110/212 (51%), Positives = 131/212 (61%), Gaps = 4/212 (1%)

Query: 5   FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVA 63
             V GNWK NGT  E  ++   LN      S V EVVV+PPF +L  V  +L      V 
Sbjct: 1   PLVAGNWKMNGTLAEALELAKALNAVLKDESGV-EVVVAPPFTYLAAVAEALEGSKIKVG 59

Query: 64  AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK 123
           AQN   +  GAFTGEISAEML +    +VI+GHSERR    E +E V  KV  AL  GL 
Sbjct: 60  AQNVSPEDSGAFTGEISAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLT 119

Query: 124 VIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
            I CVGETLE+REAG T +VVAAQ  A+   V   + +V+AYEPVWAIGTGK A+P QAQ
Sbjct: 120 PILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVIAYEPVWAIGTGKTASPEQAQ 179

Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           EVH  +RK  LA    E+A   RI+YGG S+N
Sbjct: 180 EVHAFIRKL-LAELYGEVAEKVRILYGG-SVN 209

The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea. Length = 242

>gnl|CDD|234589 PRK00042, tpiA, triosephosphate isomerase; Provisional

 Score =  268 bits (689), Expect = 2e-91
 Identities = 111/216 (51%), Positives = 137/216 (63%), Gaps = 6/216 (2%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-GFH 61
           RK  + GNWK N T  E K +V  L    +P +D VEV V+PPF  L  VK +L+     
Sbjct: 1   RKPIIAGNWKMNKTLAEAKALVEELKA-ALPDADGVEVAVAPPFTALASVKEALKGSNIK 59

Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           + AQN   +  GAFTGEISAEML +L + +VI+GHSERR    E +E V  KV  AL  G
Sbjct: 60  LGAQNVHPEDSGAFTGEISAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAG 119

Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATP 179
           L  I CVGETLE+REAG T +VVA Q +A    +S   ++N+V+AYEPVWAIGTGK ATP
Sbjct: 120 LTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQFANLVIAYEPVWAIGTGKTATP 179

Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
            QAQEVH  +R   LA    E+A   RI+YGG S+ 
Sbjct: 180 EQAQEVHAFIRAV-LAELYGEVAEKVRILYGG-SVK 213

Length = 250

>gnl|CDD|215732 pfam00121, TIM, Triosephosphate isomerase

 Score =  258 bits (661), Expect = 2e-87
 Identities = 108/213 (50%), Positives = 138/213 (64%), Gaps = 5/213 (2%)

Query: 5   FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVA 63
             + GNWK N T  E  ++   L    + +  V EVVV+PPF +L  VK +L+     V 
Sbjct: 1   PIIIGNWKMNKTLAEALELAKALLAAALKNDGV-EVVVAPPFTYLSPVKQALKGSNIKVG 59

Query: 64  AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK 123
           AQN   +  GAFTGE+SAEML +L + +VI+GHSERR    E +E V  KV  AL  GL 
Sbjct: 60  AQNVSAEDSGAFTGEVSAEMLKDLGVSYVIIGHSERRQYFGETDEIVAKKVKAALKNGLT 119

Query: 124 VIACVGETLEQREAGSTMDVVAAQTKAIADRVS-SWSNIVLAYEPVWAIGTGKVATPAQA 182
            + CVGETLE+REAG T++V+  Q KAI   +   W N+++AYEPVWAIGTGKVATP QA
Sbjct: 120 PVLCVGETLEEREAGKTLEVLKRQLKAILAGLDEEWKNLIIAYEPVWAIGTGKVATPEQA 179

Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QEVH  +RK+ LA  S E+A   RI+YGG S+N
Sbjct: 180 QEVHAFIRKY-LAELSKEVAEEVRILYGG-SVN 210

Length = 242

>gnl|CDD|223227 COG0149, TpiA, Triosephosphate isomerase [Carbohydrate transport and metabolism]

 Score =  244 bits (626), Expect = 7e-82
 Identities = 104/214 (48%), Positives = 127/214 (59%), Gaps = 4/214 (1%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPG-FH 61
           RK  V GNWK N T  E K +V  L    V   D VEV ++PPF  L  V   +  G   
Sbjct: 2   RKPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNIK 61

Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           V AQN   +  GAFTGEISAEML +L   +V++GHSERRL   E +E +  KV  A   G
Sbjct: 62  VGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAG 121

Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQ 181
           L  I CVGETLE+REAG T++V+  Q  A    +S  +NIV+AYEPVWAIGTGK A+PA 
Sbjct: 122 LTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEANIVIAYEPVWAIGTGKSASPAD 181

Query: 182 AQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           A+EVH  +R  L      E     RI+YGG S+ 
Sbjct: 182 AEEVHAFIRAVLAELFGAE--EKVRILYGG-SVK 212

Length = 251

>gnl|CDD|166070 PLN02429, PLN02429, triosephosphate isomerase

 Score =  242 bits (619), Expect = 4e-80
 Identities = 134/212 (63%), Positives = 159/212 (75%), Gaps = 3/212 (1%)

Query: 4   KFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVA 63
           KFFVGGNWKCNGT + + K++S LN   + +   V+VVVSPPFV++  VKSSL     ++
Sbjct: 65  KFFVGGNWKCNGTKDSIAKLISDLNSATLEAD--VDVVVSPPFVYIDQVKSSLTDRIDIS 122

Query: 64  AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK 123
            QN WV KGGAFTGEIS E L +L   WVILGHSERR ++ E +EF+G K AYALS+GL 
Sbjct: 123 GQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLG 182

Query: 124 VIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
           VIAC+GE LE+REAG T DV  AQ KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQ
Sbjct: 183 VIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQ 242

Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           EVH  +R WL  N S E+A+ TRIIYGG S+N
Sbjct: 243 EVHVAVRGWLKKNVSEEVASKTRIIYGG-SVN 273

Length = 315

>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional

 Score =  206 bits (527), Expect = 7e-63
 Identities = 103/218 (47%), Positives = 130/218 (59%), Gaps = 10/218 (4%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVV--EVVVSPPFVFLGLVKSSLR-PG 59
           RK  + GNWK N TP E K+ V+ L             EVVV PPF  L  VK ++    
Sbjct: 397 RKPIIAGNWKMNKTPAEAKEFVNEL----KKYVKDAQAEVVVCPPFTALPSVKEAVDGSN 452

Query: 60  FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
             + AQN + ++ GA+TGEIS  ML  + + +VI+GHSERR    E +E V  KV  AL 
Sbjct: 453 IKLGAQNVFYEEKGAYTGEISGPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALK 512

Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVA 177
            GL  I CVGETL++RE+G T DVV  Q KA  + +S+     +V+AYEPVWAIGTGKVA
Sbjct: 513 AGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQVKKVVIAYEPVWAIGTGKVA 572

Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           TP QAQEVH  +RK +      E A   RI+YGG S+ 
Sbjct: 573 TPEQAQEVHAFIRKLVAELYGEEAARKVRILYGG-SVK 609

Length = 645

>gnl|CDD|129513 TIGR00419, tim, triosephosphate isomerase

 Score =  178 bits (453), Expect = 2e-56
 Identities = 64/207 (30%), Positives = 91/207 (43%), Gaps = 32/207 (15%)

Query: 6   FVGGNWK-CNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAA 64
            V GNWK  N +       V+ + E +V S   V V V+PPFV L ++K  +     V A
Sbjct: 1   LVIGNWKTYNESRGMRALEVAKIAE-EVASEAGVAVAVAPPFVDLPMIKREVE--IPVYA 57

Query: 65  QNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124
           Q+      GA TGEISAEML ++     ++ HSERR+ L +    +  K+A     GL  
Sbjct: 58  QHVDAVLSGAHTGEISAEMLKDIGAKGTLINHSERRMKLAD----IEKKIARLKELGLTS 113

Query: 125 IACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQE 184
           + C              + V     A A         V+A EP   IGTG   +PAQ + 
Sbjct: 114 VVCT-------------NNVLTTAAAAA-----LEPDVVAVEPPELIGTGIPVSPAQPEV 155

Query: 185 VHFELRKWLLANTSPEIAAATRIIYGG 211
           VH  +R         E+  + R++ G 
Sbjct: 156 VHGSVR------AVKEVNESVRVLCGA 176

Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 205

>gnl|CDD|184749 PRK14566, PRK14566, triosephosphate isomerase; Provisional

 Score =  167 bits (425), Expect = 1e-51
 Identities = 87/220 (39%), Positives = 122/220 (55%), Gaps = 15/220 (6%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIV-SVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSL----- 56
           R+  V GNWK NG+    +++      + Q   +D  EVV+ PP ++L  V+  L     
Sbjct: 4   RRPMVAGNWKMNGSAALAQELFKKFAGKLQ---NDSAEVVLCPPSIYLESVRQLLEANKE 60

Query: 57  ---RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDK 113
                   + AQN      GA+TGE+S +ML +    +VI+GHSERR +  E +  V +K
Sbjct: 61  ALDGSLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEK 120

Query: 114 VAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVS-SWSNIVLAYEPVWAI 171
            A A   GL  I CVGE+   REA  T +V+A +    I    + ++ N ++AYEP+WA+
Sbjct: 121 FAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAFDNAIIAYEPLWAV 180

Query: 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           GTGK ATP QAQEVH  +RK  L+  SP I    RI+YGG
Sbjct: 181 GTGKSATPEQAQEVHAFIRK-RLSEVSPFIGENIRILYGG 219

Length = 260

>gnl|CDD|237758 PRK14565, PRK14565, triosephosphate isomerase; Provisional

 Score =  143 bits (362), Expect = 2e-42
 Identities = 81/241 (33%), Positives = 112/241 (46%), Gaps = 25/241 (10%)

Query: 5   FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAA 64
           F +  NWK NG        +  L+     +   +++V+ PPF  +        P   + A
Sbjct: 3   FLIVANWKMNGDFSLFSSFLKELSNKLANNEITLKLVICPPFTAMSSFVE-CNPNIKLGA 61

Query: 65  QNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124
           QNC+    G +TGEISA+ML      +VILGHSERR   +E +  +  K   A+  GL  
Sbjct: 62  QNCFYGSSGGYTGEISAKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIP 121

Query: 125 IACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQE 184
           I CVGETLE RE G T DV+  Q     + +      ++AYEPVWAIG   + +     E
Sbjct: 122 IICVGETLEDRENGMTKDVLLEQCS---NCLPKHGEFIIAYEPVWAIGGSTIPSNDAIAE 178

Query: 185 VHFELRKWLLANTSPEIAAATRIIYGG----------ISIN-VSHVLV-HLLLSFGCFYN 232
             FE+ +   +  S      + IIYGG           SIN +S VLV    L    F  
Sbjct: 179 A-FEIIR---SYDS-----KSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCK 229

Query: 233 V 233
           +
Sbjct: 230 I 230

Length = 237

>gnl|CDD|173031 PRK14567, PRK14567, triosephosphate isomerase; Provisional

 Score =  134 bits (339), Expect = 8e-39
 Identities = 78/205 (38%), Positives = 117/205 (57%), Gaps = 4/205 (1%)

Query: 9   GNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCW 68
           GNWK NG    +K++ S +++ Q  +S V  + V P  V++  V S L     V  QN  
Sbjct: 7   GNWKMNGNSTSIKELCSGISQVQYDTSRVA-IAVFPSSVYVKEVISQLPEKVGVGLQNIT 65

Query: 69  VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV 128
               GA+TGEISA ML ++   ++++GHSERR +  E +E V  K+   +   +  + C+
Sbjct: 66  FYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCI 125

Query: 129 GETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
           GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H
Sbjct: 126 GESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETH 185

Query: 187 FELRKWLLANTSPEIAAATRIIYGG 211
             +R  LLA     +A   +I+YGG
Sbjct: 186 QFIRS-LLAKVDERLAKNIKIVYGG 209

Length = 253

>gnl|CDD|184898 PRK14905, PRK14905, triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional

 Score =  112 bits (280), Expect = 3e-29
 Identities = 77/224 (34%), Positives = 112/224 (50%), Gaps = 10/224 (4%)

Query: 1   MGRKFFVGGNWKC-NGTPEEVKKIVSVLNEGQVPSSDV-VEVVVSPPFVFLG----LVKS 54
           M +K + G N K   G  E V  +  +L   +   SD  +E+ V P ++ L        S
Sbjct: 1   MAKKIYFGTNLKMYKGNAETVDYLSELLAFAEKFKSDYDIELFVIPSYIALKDAVEAAAS 60

Query: 55  -SLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDK 113
            +  P   + AQN   K  G FTGEIS  ML  L I  V++GHSERR +L E ++   +K
Sbjct: 61  ETGHPKIKIGAQNMNAKDKGQFTGEISPLMLKELGIELVMIGHSERRHVLKETDQEENEK 120

Query: 114 VAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAI 171
           V  AL  G   + C+GETLEQ+    + +V+  Q K     VS+    ++ +AYEPVWAI
Sbjct: 121 VLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQLPHLFIAYEPVWAI 180

Query: 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           G G +   A+  +    + K  L     E +    ++YGG S+N
Sbjct: 181 GEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGG-SVN 223

Length = 355

>gnl|CDD|185389 PRK15492, PRK15492, triosephosphate isomerase; Provisional

 Score = 93.5 bits (232), Expect = 5e-23
 Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 10/202 (4%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNE--GQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           +K + G N K      +    ++ L+E    +P+   +E+ V P F  +    ++     
Sbjct: 2   KKIYFGTNLKMYKGIADATDFLAKLSELADDIPADKDIELFVIPSFTAIQDAIAATLAIP 61

Query: 61  H-----VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVA 115
           H     + AQN      G FTG+IS  ML  +    V++GHSERR    E ++    KV 
Sbjct: 62  HDHPIIIGAQNMNPNDNGQFTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVL 121

Query: 116 YALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGT 173
            AL      + CVGETLEQ+  G + +++  Q K     ++    + + +AYEPVWAIG 
Sbjct: 122 AALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGINPDQLAKLRIAYEPVWAIGE 181

Query: 174 GKV-ATPAQAQEVHFELRKWLL 194
             + A+   A E H  +++ L+
Sbjct: 182 AGIPASADYADEKHAVIKQCLI 203

Length = 260

>gnl|CDD|235274 PRK04302, PRK04302, triosephosphate isomerase; Provisional

 Score = 54.1 bits (131), Expect = 6e-09
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 38  VEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHS 97
           V + V+P  + +  V   +     V AQ+    + G+ TG I  E + +      ++ HS
Sbjct: 37  VRIAVAPQALDIRRVAEEV--DIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHS 94

Query: 98  ERRLILNELNEFVGDKVAYALSQGLKVIACV 128
           ERRL L +    +   V  A   GL+ + CV
Sbjct: 95  ERRLTLAD----IEAVVERAKKLGLESVVCV 121

Length = 223

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PLN02561	253	triosephosphate isomerase	100.0
KOG1643	247	consensus Triosephosphate isomerase [Carbohydrate	100.0
PRK14566	260	triosephosphate isomerase; Provisional	100.0
PRK14567	253	triosephosphate isomerase; Provisional	100.0
PTZ00333	255	triosephosphate isomerase; Provisional	100.0
PRK00042	250	tpiA triosephosphate isomerase; Provisional	100.0
PRK15492	260	triosephosphate isomerase; Provisional	100.0
PF00121	244	TIM: Triosephosphate isomerase; InterPro: IPR00065	100.0
cd00311	242	TIM Triosephosphate isomerase (TIM) is a glycolyti	100.0
COG0149	251	TpiA Triosephosphate isomerase [Carbohydrate trans	100.0
PLN02429	315	triosephosphate isomerase	100.0
PRK14905	355	triosephosphate isomerase/PTS system glucose/sucro	100.0
PRK14565	237	triosephosphate isomerase; Provisional	100.0
PRK13962	645	bifunctional phosphoglycerate kinase/triosephospha	100.0
TIGR00419	205	tim triosephosphate isomerase. Triosephosphate iso	100.0
PRK04302	223	triosephosphate isomerase; Provisional	100.0
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	97.79
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	97.21
PLN02591	250	tryptophan synthase	97.19
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	96.99
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	96.87
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	96.78
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	96.68
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	96.2
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	95.45
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	95.19
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	95.17
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	95.14
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	95.06
PRK00208	250	thiG thiazole synthase; Reviewed	94.97
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	94.54
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	93.71
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	93.04
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	92.26
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	92.21
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	91.48
PF01183	181	Glyco_hydro_25: Glycosyl hydrolases family 25; Int	91.31
PLN02334	229	ribulose-phosphate 3-epimerase	90.78
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	90.3
PRK11572	248	copper homeostasis protein CutC; Provisional	90.09
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	89.72
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	89.5
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	88.83
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	88.59
COG3142	241	CutC Uncharacterized protein involved in copper re	87.85
cd06525	184	GH25_Lyc-like Lyc muramidase is an autolytic lysoz	87.48
cd06412	199	GH25_CH-type CH-type (Chalaropsis-type) lysozymes	87.2
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	86.88
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	86.5
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	86.21
cd06413	191	GH25_muramidase_1 Uncharacterized bacterial murami	85.63
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	84.25
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	80.9

>PLN02561 triosephosphate isomerase

Probab=100.00  E-value=3.1e-84  Score=574.78  Aligned_cols=223  Identities=83%  Similarity=1.247  Sum_probs=209.0

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccC
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      |.|||||+||||||++.+++.+|++.+.....+...++++++||||++|..+.+.++++|.+||||||+.++||||||||
T Consensus         1 ~~rk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS   80 (253)
T PLN02561          1 MARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPDFQVAAQNCWVKKGGAFTGEIS   80 (253)
T ss_pred             CCCccEEEEECCcCCCHHHHHHHHHHHHhcccCccCCeeEEEeCCHHHHHHHHHHhccCCeEEeccccCcCCCCccCcCC
Confidence            78999999999999999999999999865312223568999999999999998876656999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+|||||||++++|++|+|.+++.+|++.+++.++..++
T Consensus        81 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~~~  160 (253)
T PLN02561         81 AEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWAN  160 (253)
T ss_pred             HHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876688


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      ++|||||+||||||++|||++++++|++||+++.++|+..+++++|||||| ||||+|+.+++.
T Consensus       161 iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGG-SV~~~N~~~l~~  223 (253)
T PLN02561        161 VVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGG-SVTGANCKELAA  223 (253)
T ss_pred             eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeC-CcCHHHHHHHhc
Confidence            999999999999999999999999999999999999998889999999999 999999999853

>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.1e-84  Score=551.94  Aligned_cols=221  Identities=62%  Similarity=0.997  Sum_probs=213.6

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccC
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      |.||++|+||||||++.+...++++.|+....+  .++|++|+||++||..+.+.+++.|.+|||||+....||||||+|
T Consensus         1 MarkffvgGNwKmngs~~s~~eii~~ln~a~~~--~~vevvi~pP~~Yl~~ak~~l~~~i~v~aQn~~~~k~GafTGEiS   78 (247)
T KOG1643|consen    1 MARKFFVGGNWKMNGSKQSIKEIIKTLNAAKLP--ANVEVVIAPPAPYLDYAKSKLKPDIGVAAQNCYKVKSGAFTGEIS   78 (247)
T ss_pred             CCcceEecccccccCcHHHHHHHHHHhhhccCC--CCCcEEEeCChhHHHHHHHhCCccceeecceeeeccCccccCccC
Confidence            889999999999999999999999999876544  579999999999999999999889999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      |+||+|+|++|||+||||||++|+|+|++|.+|++.||+.||.+|.||||++||||+|+|.+|+.+||.++.+.+.+|++
T Consensus        79 ~~mlkd~G~~wVIlGHSERR~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~leeREaG~t~dVv~~Ql~aiad~v~~w~n  158 (247)
T KOG1643|consen   79 AEMLKDLGAEWVILGHSERRHVFGESDEFIADKTAHALAEGLKVIACIGETLEEREAGKTLDVVFRQLKAIADKVKDWSN  158 (247)
T ss_pred             HHHHHhCCCCEEEecchhhhhhhCCchHHHHHHHHHHHHcCCeEEEEecccHHhhhcCchHHHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      ++||||||||||||++|||+|+||+|..||+|+.++.+..++..+||+||| |||..|+++++.
T Consensus       159 iviAYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGG-SV~g~N~~el~~  221 (247)
T KOG1643|consen  159 IVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGG-SVNGGNCKELAK  221 (247)
T ss_pred             eEEEeeceeeecCCCCCCHHHHHHHHHHHHHHHhhcchhhhhhceEEEecc-ccccccHHHhcc
Confidence            999999999999999999999999999999999999999999999999999 999999999753

>PRK14566 triosephosphate isomerase; Provisional

Probab=100.00  E-value=1.7e-83  Score=571.32  Aligned_cols=220  Identities=40%  Similarity=0.614  Sum_probs=204.6

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CC-------cEEeeeccccccCc
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PG-------FHVAAQNCWVKKGG   73 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~-------i~igAQnv~~~~~G   73 (237)
                      .|||+|+||||||++.+++.+|++.+.....+  +++++++||||++|..+.+.+. ++       +.+|||||++.++|
T Consensus         3 ~rk~~i~gNWKmn~~~~~~~~~~~~l~~~~~~--~~v~v~v~Pp~~~L~~~~~~~~~~~~~~~g~~i~v~AQnv~~~~~G   80 (260)
T PRK14566          3 LRRPMVAGNWKMNGSAALAQELFKKFAGKLQN--DSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNVSQHDFG   80 (260)
T ss_pred             CCCeEEEEECCcCcCHHHHHHHHHHHHhhcCC--CCeeEEEECCHHHHHHHHHHhccCcccccCceEEEEecccccccCC
Confidence            47889999999999999999999998664322  4699999999999999988765 44       99999999999999


Q ss_pred             CcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 026522           74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD  153 (237)
Q Consensus        74 A~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~  153 (237)
                      ||||||||+||+|+||+||||||||||++|+|+|++|++|+++|+++||+||+|||||+++|++|+|.+++.+||+..|+
T Consensus        81 a~TGevS~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l~  160 (260)
T PRK14566         81 AYTGEVSGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIE  160 (260)
T ss_pred             CccCccCHHHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccC--CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          154 RVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       154 ~i~--~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      ++.  ++++++|||||+||||||++|||++||++|++||++|.++ +.++++++|||||| ||||+|+.+|+..
T Consensus       161 ~~~~~~~~~ivIAYEPvWAIGTG~~At~e~a~~v~~~IR~~l~~~-~~~~a~~~rIlYGG-SV~~~N~~~l~~~  232 (260)
T PRK14566        161 KNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEV-SPFIGENIRILYGG-SVTPSNAADLFAQ  232 (260)
T ss_pred             ccchhhcCcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHhc-CccccccceEEecC-CCCHhHHHHHhcC
Confidence            542  3789999999999999999999999999999999999988 77788899999999 9999999998653

>PRK14567 triosephosphate isomerase; Provisional

Probab=100.00  E-value=2.1e-83  Score=569.09  Aligned_cols=220  Identities=35%  Similarity=0.564  Sum_probs=204.9

Q ss_pred             cceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHH
Q 026522            4 KFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEM   83 (237)
Q Consensus         4 ~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~m   83 (237)
                      ||||+||||||++.+++.+|++.+..... ...++++++||||++|..+.+.+.+++.+||||||+.+.|||||||||+|
T Consensus         2 ~~~v~gNWKMn~~~~~~~~~~~~~~~~~~-~~~~~~v~vaP~~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGEvS~~m   80 (253)
T PRK14567          2 QKLIMGNWKMNGNSTSIKELCSGISQVQY-DTSRVAIAVFPSSVYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARM   80 (253)
T ss_pred             CeEEEEECCcCCCHHHHHHHHHHHHhhcc-CCCCcEEEEeCCHHHHHHHHHHhcCCCEEEccccccccCCCccCcCCHHH
Confidence            67899999999999999999999866432 22468999999999999998766567999999999999999999999999


Q ss_pred             HHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCCCe
Q 026522           84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNI  161 (237)
Q Consensus        84 Lkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~~~i  161 (237)
                      |||+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.+++.+||+.+++.++  +++++
T Consensus        81 Lkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~~l~~i~~~~~~~i  160 (253)
T PRK14567         81 LEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKV  160 (253)
T ss_pred             HHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHHHhCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999875  37899


Q ss_pred             EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522          162 VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS  226 (237)
Q Consensus       162 iIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~  226 (237)
                      +|||||+||||||++|||++|+++|++||+++.+ ++..+++++|||||| ||||+|+.+++.++
T Consensus       161 vIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~-~~~~~a~~v~IlYGG-SV~~~N~~~l~~~~  223 (253)
T PRK14567        161 VIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAK-VDERLAKNIKIVYGG-SLKAENAKDILSLP  223 (253)
T ss_pred             EEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHh-hcccccccceEEEcC-cCCHHHHHHHHcCC
Confidence            9999999999999999999999999999999988 677788899999999 99999999987654

>PTZ00333 triosephosphate isomerase; Provisional

Probab=100.00  E-value=4.6e-83  Score=568.40  Aligned_cols=222  Identities=55%  Similarity=0.901  Sum_probs=208.8

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCccccc
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEI   79 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGei   79 (237)
                      |||+|+|++|||||++.+++.+|++.+..... ...++++++||||++|..+.+.+. +++.+||||||+.+.|||||||
T Consensus         2 ~~~k~~i~~NwKmn~~~~~~~~~~~~~~~~~~-~~~~v~v~i~P~~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGev   80 (255)
T PTZ00333          2 MKRKPFVGGNWKCNGTKASIKELIDSFNKLKF-DPNNVDVVVAPPSLHIPLVQEKLKNKNFKISSQNVSLTGSGAFTGEI   80 (255)
T ss_pred             CCCCeEEEEEcccccCHHHHHHHHHHHHhhcc-ccCCeeEEEECCHHHHHHHHHHhcCCCeeEEccccccccCCCccCcC
Confidence            47889999999999999999999999876432 224689999999999999998877 7899999999999999999999


Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCC--
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--  157 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~--  157 (237)
                      ||+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.++|.+|++.+++.++.  
T Consensus        81 S~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~~  160 (255)
T PTZ00333         81 SAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEA  160 (255)
T ss_pred             CHHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988853  


Q ss_pred             CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       158 ~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      ..+++|||||+||||||++|+||+|+++|++||+.+.++++..+++++|||||| ||+|+|+.+++.
T Consensus       161 ~~~iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGG-SV~~~N~~~l~~  226 (255)
T PTZ00333        161 WDNIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGG-SVNEKNCKELIK  226 (255)
T ss_pred             cceEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcC-CCCHHHHHHHhc
Confidence            689999999999999999999999999999999999999988888999999999 999999999854

>PRK00042 tpiA triosephosphate isomerase; Provisional

Probab=100.00  E-value=7.2e-83  Score=565.82  Aligned_cols=219  Identities=50%  Similarity=0.732  Sum_probs=206.2

Q ss_pred             CcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCH
Q 026522            3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISA   81 (237)
Q Consensus         3 r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa   81 (237)
                      |||+|++|||||++..++.+|++.+.+... ...++++++||||++|..+++.++ +++.+||||||+.+.|||||||||
T Consensus         1 ~~~~v~~NwKmn~~~~~~~~~~~~l~~~~~-~~~~~~v~v~Pp~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGevS~   79 (250)
T PRK00042          1 RKPIIAGNWKMNKTLAEAKALVEELKAALP-DADGVEVAVAPPFTALASVKEALKGSNIKLGAQNVHPEDSGAFTGEISA   79 (250)
T ss_pred             CCcEEEEEcccCcCHHHHHHHHHHHHhhcc-ccCCeeEEEECCHHHHHHHHHHhcCCCeEEEecccccccCCCccCccCH
Confidence            578999999999999999999999876432 224689999999999999998777 789999999999999999999999


Q ss_pred             HHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCC
Q 026522           82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWS  159 (237)
Q Consensus        82 ~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~~  159 (237)
                      +||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|+|.++|.+||+.+|++++  .++
T Consensus        80 ~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~~  159 (250)
T PRK00042         80 EMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQFA  159 (250)
T ss_pred             HHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999875  378


Q ss_pred             CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      +++|||||+||||||++|||++++++|++||++++++++ ++++++|||||| ||||+|+.+++.
T Consensus       160 ~~vIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~-~~~~~~~IlYGG-SV~~~N~~~l~~  222 (250)
T PRK00042        160 NLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYG-EVAEKVRILYGG-SVKPDNAAELMA  222 (250)
T ss_pred             CEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcc-cccCCceEEEcC-CCCHHHHHHHhc
Confidence            999999999999999999999999999999999999998 788999999999 999999999764

>PRK15492 triosephosphate isomerase; Provisional

Probab=100.00  E-value=9e-83  Score=567.78  Aligned_cols=222  Identities=29%  Similarity=0.444  Sum_probs=205.3

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCC--CCCCCCceEEEcCccccHHHHHHhc----C-CCcEEeeeccccccCcC
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQ--VPSSDVVEVVVSPPFVFLGLVKSSL----R-PGFHVAAQNCWVKKGGA   74 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~--~~~~~~~~v~i~Pp~~~L~~~~~~~----~-~~i~igAQnv~~~~~GA   74 (237)
                      ||||||+||||||++..++.+|++.+.+..  .+...++++++||||++|..+.+.+    . +++.+|||||++.+.||
T Consensus         1 Mrk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~P~~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~Ga   80 (260)
T PRK15492          1 MKKIYFGTNLKMYKGIADATDFLAKLSELADDIPADKDIELFVIPSFTAIQDAIAATLAIPHDHPIIIGAQNMNPNDNGQ   80 (260)
T ss_pred             CCCCEEEEECCcCCCHHHHHHHHHHHHhhhhhcccCCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCCC
Confidence            499999999999999999999999986531  1122468999999999999998865    2 57999999999999999


Q ss_pred             cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhc
Q 026522           75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR  154 (237)
Q Consensus        75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~  154 (237)
                      |||||||+||||+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|+.|++.+++.+||+.+|+.
T Consensus        81 ~TGevSa~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~  160 (260)
T PRK15492         81 FTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHG  160 (260)
T ss_pred             ccCcCCHHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC--CCCCeEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          155 VS--SWSNIVLAYEPVWAIGT-GKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       155 i~--~~~~iiIAYEPvWAIGt-G~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      ++  .+++++|||||+||||| |++||||+++++|++||++|.+.++.. ++++|||||| ||||+|+.+|+..
T Consensus       161 ~~~~~~~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~-~~~irILYGG-SV~~~N~~~l~~~  232 (260)
T PRK15492        161 INPDQLAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDA-GDDIPVFYGG-SVNAENANELFGQ  232 (260)
T ss_pred             CCHhhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEcC-ccCHHHHHHHhcC
Confidence            85  37899999999999998 999999999999999999999999866 7889999999 9999999998643

>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5

Probab=100.00  E-value=1.9e-83  Score=567.89  Aligned_cols=219  Identities=46%  Similarity=0.721  Sum_probs=202.6

Q ss_pred             ceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCHHH
Q 026522            5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEM   83 (237)
Q Consensus         5 ~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa~m   83 (237)
                      |||++|||||++.+++.+|++.+.+...+ ..+++++|||||++|..+++.++ +++.+||||||+.+.|||||||||+|
T Consensus         1 kii~~NwKmn~~~~~~~~~~~~l~~~~~~-~~~v~v~i~Pp~~~L~~~~~~~~~~~i~igAQnv~~~~~Ga~TGevS~~m   79 (244)
T PF00121_consen    1 KIIIGNWKMNGTGEEALEFLKELLNAKLP-NKDVEVVIAPPFTYLSSVSKILKGSNIKIGAQNVSPEDSGAFTGEVSAEM   79 (244)
T ss_dssp             SEEEEEETBSGSHHHHHHHHHHHHHHHCH-TTTEEEEEEESGGGHHHHHHHHTTTTSEEEESS-BSSSSBS-TTHHBHHH
T ss_pred             CEEEEehhhCcCHHHHHHHHHHHHhcccc-cCCeeEEEEecchhHHHHHhhccCCeEEEecccccchhhcccHHHhHHHH
Confidence            68999999999999999999997654322 15899999999999999999887 89999999999999999999999999


Q ss_pred             HHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCCCe
Q 026522           84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNI  161 (237)
Q Consensus        84 Lkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~~~i  161 (237)
                      |+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.++|.+||+.+|++++  +++++
T Consensus        80 L~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~~~~~  159 (244)
T PF00121_consen   80 LKDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKSILKGIDKEELKNI  159 (244)
T ss_dssp             HHHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGGGGTCE
T ss_pred             HHHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHHHHhccccccccce
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986  36899


Q ss_pred             EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          162 VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       162 iIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      +|||||+||||||++|||++++++|++||++|+++|+.++++++|||||| ||||+|+.+++..
T Consensus       160 iIAYEPvWAIGtG~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGG-SV~~~N~~~l~~~  222 (244)
T PF00121_consen  160 IIAYEPVWAIGTGKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGG-SVNPENAAELLSQ  222 (244)
T ss_dssp             EEEEEEGGGTSSSS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEES-SESTTTHHHHHTS
T ss_pred             EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECC-cCCcccHHHHhcC
Confidence            99999999999999999999999999999999999988889999999999 9999999998743

3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....

>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate

Probab=100.00  E-value=1.4e-82  Score=561.72  Aligned_cols=219  Identities=49%  Similarity=0.698  Sum_probs=206.9

Q ss_pred             ceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCHHH
Q 026522            5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEM   83 (237)
Q Consensus         5 ~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa~m   83 (237)
                      |+|++|||||++.+++.+|++.+..... ...+++++|||||++|..+.+.++ +++.+||||||+.+.|||||||||+|
T Consensus         1 ~~i~~NwKmn~~~~~~~~~~~~l~~~~~-~~~~v~v~i~Pp~~~L~~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~~m   79 (242)
T cd00311           1 PLVAGNWKMNGTLAEALELAKALNAVLK-DESGVEVVVAPPFTYLAAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEM   79 (242)
T ss_pred             CEEEEECCcccCHHHHHHHHHHHHhhcc-ccCCceEEEECCHHHHHHHHHHccCCCeEEEecccccccCCCCcCcCCHHH
Confidence            5899999999999999999999876432 235799999999999999998876 68999999999999999999999999


Q ss_pred             HHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEE
Q 026522           84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVL  163 (237)
Q Consensus        84 Lkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiI  163 (237)
                      |+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|+|.+++.+|++..++.++.+++++|
T Consensus        80 L~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~~~iI  159 (242)
T cd00311          80 LKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVI  159 (242)
T ss_pred             HHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhcCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988866889999


Q ss_pred             EEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522          164 AYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS  226 (237)
Q Consensus       164 AYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~  226 (237)
                      ||||+||||||++|||++++++|++||+++++.++. +++++|||||| ||||+|+.+++.++
T Consensus       160 AYEPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~-~~~~~~IlYGG-SV~~~N~~~l~~~~  220 (242)
T cd00311         160 AYEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGE-VAEKVRILYGG-SVNPENAAELLAQP  220 (242)
T ss_pred             EECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhccc-ccCceeEEECC-CCCHHHHHHHhcCC
Confidence            999999999999999999999999999999999987 88999999999 99999999988764

The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.

>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.8e-82  Score=560.14  Aligned_cols=220  Identities=47%  Similarity=0.668  Sum_probs=205.3

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      ||+++|+||||||++..++.+|++.+.....+...+++++|||||++|..+.+.+. .++.+||||||+.++||||||||
T Consensus         1 ~~~~~v~gNwKmn~t~~~~~~~~~~~~~~~~~~~~~~~v~I~pp~~~L~~~~~~~~~g~i~~gAQn~~~~~~GA~TGeiS   80 (251)
T COG0149           1 MRKPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNIKVGAQNVDPEDSGAFTGEIS   80 (251)
T ss_pred             CCCcEEEEEcccCcChHHHHHHHHHHhhcccccccceeEEEeCCHHHHHHHHHHhccCCceEEeccCCcccCCCccCcCC
Confidence            48889999999999999999999998765433223344999999999999999887 48999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      ++||+|+||+||||||||||.+|+|+|++|++|+++|+++||+||+||||++++||+|+|.++|.+|++..+..++..++
T Consensus        81 ~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~~  160 (251)
T COG0149          81 AEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEAN  160 (251)
T ss_pred             HHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcCCCHHHHhccChHHHHHHHHHHHHhhcCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998865578


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      ++|||||+||||||+++|+++++++|++||.++.+++|.+  +.+|||||| ||||+|+.+++.
T Consensus       161 ~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~--~~v~IlYGG-SV~~~N~~e~~~  221 (251)
T COG0149         161 IVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAE--EKVRILYGG-SVKPGNAAELAA  221 (251)
T ss_pred             eEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCC--CCeEEEEeC-CcChhHHHHHhc
Confidence            9999999999999999999999999999999999999866  899999999 999999999864

>PLN02429 triosephosphate isomerase

Probab=100.00  E-value=4.9e-82  Score=573.63  Aligned_cols=221  Identities=61%  Similarity=0.979  Sum_probs=208.4

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccC
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      |.|||||+||||||++.+++.+|++.+.....+  .+++++|||||++|..+.+.+.+++.+|||||++.+.||||||||
T Consensus        62 ~~~k~~i~gNWKmn~t~~~~~~~~~~l~~~~~~--~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~GayTGEVS  139 (315)
T PLN02429         62 GSGKFFVGGNWKCNGTKDSIAKLISDLNSATLE--ADVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEIS  139 (315)
T ss_pred             ccCCEEEEEECCcCCCHHHHHHHHHHHHhcccC--CCceEEEeCCHHHHHHHHHHhcCCCeEEecccCCCCCCCccCcCC
Confidence            347899999999999999999999998663222  369999999999999998876667999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.+++.+||+.+++.++++++
T Consensus       140 a~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~~~  219 (315)
T PLN02429        140 VEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDN  219 (315)
T ss_pred             HHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998877889


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      ++|||||+||||||++|||++++++|++||++|+++++.++++++|||||| ||||+|+.+++.
T Consensus       220 ivIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGG-SV~~~N~~el~~  282 (315)
T PLN02429        220 IVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGG-SVNGGNSAELAK  282 (315)
T ss_pred             eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcC-ccCHHHHHHHhc
Confidence            999999999999999999999999999999999999998889999999999 999999999873

>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional

Probab=100.00  E-value=2.9e-79  Score=565.76  Aligned_cols=223  Identities=34%  Similarity=0.491  Sum_probs=205.4

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHhcCCC--CCCCCceEEEcCccccHHHHHHhcC-----CCcEEeeeccccccCc
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQV--PSSDVVEVVVSPPFVFLGLVKSSLR-----PGFHVAAQNCWVKKGG   73 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~--~~~~~~~v~i~Pp~~~L~~~~~~~~-----~~i~igAQnv~~~~~G   73 (237)
                      |.|+|||+||||||++.+++.+|++.|.....  +...++++++||||++|..+.+.+.     +++.+||||||+.+.|
T Consensus         1 ~~r~~~v~gNWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~G   80 (355)
T PRK14905          1 MAKKIYFGTNLKMYKGNAETVDYLSELLAFAEKFKSDYDIELFVIPSYIALKDAVEAAASETGHPKIKIGAQNMNAKDKG   80 (355)
T ss_pred             CCCceEEEEECCcCCCHHHHHHHHHHHHHhhhhccccCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCC
Confidence            66889999999999999999999999865321  1224689999999999999987663     4799999999999999


Q ss_pred             CcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 026522           74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD  153 (237)
Q Consensus        74 A~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~  153 (237)
                      ||||||||+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.+++.+||+..++
T Consensus        81 a~TGEVS~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~  160 (355)
T PRK14905         81 QFTGEISPLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLH  160 (355)
T ss_pred             CccCcCCHHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccC--CCCCeEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          154 RVS--SWSNIVLAYEPVWAIGT-GKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       154 ~i~--~~~~iiIAYEPvWAIGt-G~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      +++  .+.+++|||||+||||| |++|||+++|++|++||++|.+.++.. ++++|||||| ||||+|+.+++..
T Consensus       161 ~v~~~~~~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~-~~~v~ILYGG-SV~~~N~~~l~~~  233 (355)
T PRK14905        161 GVSAEQLPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEE-SKKIPVLYGG-SVNLENANELIMK  233 (355)
T ss_pred             cCCHhhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEeC-cCCHHHHHHHhcC
Confidence            874  47899999999999998 899999999999999999999999876 7889999999 9999999998653

>PRK14565 triosephosphate isomerase; Provisional

Probab=100.00  E-value=9.6e-79  Score=535.01  Aligned_cols=207  Identities=35%  Similarity=0.572  Sum_probs=191.8

Q ss_pred             cceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHH
Q 026522            4 KFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEM   83 (237)
Q Consensus         4 ~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~m   83 (237)
                      ||||+||||||++.+++.+|++.+.........++++++||||++|..+.+.. +++.+|||||++.++|||||||||+|
T Consensus         2 ~~~v~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~v~v~iaP~~~~l~~~~~~~-~~i~vgAQnv~~~~~Ga~TGevS~~m   80 (237)
T PRK14565          2 SFLIVANWKMNGDFSLFSSFLKELSNKLANNEITLKLVICPPFTAMSSFVECN-PNIKLGAQNCFYGSSGGYTGEISAKM   80 (237)
T ss_pred             CcEEEEECccccCHHHHHHHHHHHHhhccccCCCceEEEECCHHHHHHHHHhc-CCceEEecccccccCCCccCccCHHH
Confidence            67999999999999999999999976432112569999999999999987743 67999999999999999999999999


Q ss_pred             HHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEE
Q 026522           84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVL  163 (237)
Q Consensus        84 Lkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiI  163 (237)
                      |||+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|+.|++.+++.+||+..+++   +++++|
T Consensus        81 Lkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~---~~~ivI  157 (237)
T PRK14565         81 LKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPK---HGEFII  157 (237)
T ss_pred             HHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcC---CCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999998875   468999


Q ss_pred             EEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          164 AYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       164 AYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      ||||+||||||++|+||+|+++|++||++.         +++|||||| ||||+|+.+++.
T Consensus       158 AYEPvWAIGtG~~a~~e~i~~~~~~Ir~~~---------~~~~IlYGG-SV~~~N~~~l~~  208 (237)
T PRK14565        158 AYEPVWAIGGSTIPSNDAIAEAFEIIRSYD---------SKSHIIYGG-SVNQENIRDLKS  208 (237)
T ss_pred             EECCHHHhCCCCCCCHHHHHHHHHHHHHhC---------CCceEEEcC-ccCHhhHHHHhc
Confidence            999999999999999999999999999862         358999999 999999999886

>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional

Probab=100.00  E-value=1.2e-78  Score=594.85  Aligned_cols=221  Identities=47%  Similarity=0.690  Sum_probs=208.0

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      ||+|+|+||||||++.+++.+|++.+.....+  .+.+++|||||++|..+.+.+. +++.+||||||+.++||||||||
T Consensus       396 Mrk~~i~gNWKMn~~~~~~~~~~~~l~~~~~~--~~~~v~v~Pp~~~L~~~~~~l~~~~i~vgAQnv~~~~~GA~TGEVS  473 (645)
T PRK13962        396 PRKPIIAGNWKMNKTPAEAKEFVNELKKYVKD--AQAEVVVCPPFTALPSVKEAVDGSNIKLGAQNVFYEEKGAYTGEIS  473 (645)
T ss_pred             CCCcEEEEECCcCcCHHHHHHHHHHHHhhccC--CCCeEEEECCHHHHHHHHHHhcCCCeEEEcccccccccCCccCcCC
Confidence            58999999999999999999999988764322  3469999999999999988777 78999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SW  158 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~  158 (237)
                      |+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+|||||+++|++|+|.+++.+||+.+|++++  .+
T Consensus       474 a~mLkd~G~~~viiGHSERR~~f~Etd~~V~~K~~~al~~GL~pIvCVGEtl~ere~g~t~~vv~~Ql~~~l~~v~~~~~  553 (645)
T PRK13962        474 GPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQV  553 (645)
T ss_pred             HHHHHHcCCCEEEECcccccCCcCcchHHHHHHHHHHHHCCCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHccCCHhHc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999875  37


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      ++++||||||||||||++|||+++|++|++||++|+++|+.++++++|||||| ||||+|+.+|+..
T Consensus       554 ~~ivIAYEPVWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGG-SV~~~N~~~l~~~  619 (645)
T PRK13962        554 KKVVIAYEPVWAIGTGKVATPEQAQEVHAFIRKLVAELYGEEAARKVRILYGG-SVKSENAAGLFNQ  619 (645)
T ss_pred             CcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhChhhhccceEEecC-CCCHhHHHHHhcC
Confidence            89999999999999999999999999999999999999998889999999999 9999999998754

>TIGR00419 tim triosephosphate isomerase

Probab=100.00  E-value=7e-70  Score=470.10  Aligned_cols=187  Identities=33%  Similarity=0.429  Sum_probs=166.5

Q ss_pred             eEEEecc-cCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHH
Q 026522            6 FVGGNWK-CNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEML   84 (237)
Q Consensus         6 ~i~~NWK-mn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mL   84 (237)
                      ||+|||| ||++..+..+|++.+..... ...++++++||||++|..+.+.+  .+.+|||||++.++|||||||||+||
T Consensus         1 ~i~~NwK~mn~~~~~~~~~~~~~~~~~~-~~~~~~v~v~Pp~~~L~~~~~~~--~i~vgAQn~~~~~~Ga~TGevS~~mL   77 (205)
T TIGR00419         1 LVIGNWKTYNESRGMRALEVAKIAEEVA-SEAGVAVAVAPPFVDLPMIKREV--EIPVYAQHVDAVLSGAHTGEISAEML   77 (205)
T ss_pred             CEEEEhhhcCCCHHHHHHHHHHHHhhcc-ccCCcEEEEECCHHHHHHHHHhc--CceEEecccccccCCCccCcCCHHHH
Confidence            5789999 99999999999988866432 23568999999999999998865  39999999999999999999999999


Q ss_pred             HhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEE
Q 026522           85 VNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLA  164 (237)
Q Consensus        85 kd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIA  164 (237)
                      ||+||+||||||||||  |+|||  |++|+++|+++||+||+||             +++.+|+...     .+++++||
T Consensus        78 kd~G~~~viiGHSERR--f~Etd--i~~Kv~~a~~~gl~~IvCi-------------~~v~~q~~~~-----~~~~~vIA  135 (205)
T TIGR00419        78 KDIGAKGTLINHSERR--MKLAD--IEKKIARLKELGLTSVVCT-------------NNVLTTAAAA-----ALEPDVVA  135 (205)
T ss_pred             HHcCCCEEEECcccCC--CCccH--HHHHHHHHHHCCCEEEEEE-------------HHHHHHHHhh-----hhcCeEEE
Confidence            9999999999999999  99999  9999999999999999999             3455555432     25789999


Q ss_pred             EcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          165 YEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       165 YEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      |||+||||||++|||+++|++|++||      ++.++++++|||||| ||||+|+.+++.
T Consensus       136 YEPvWAIGtG~~as~~~~~~v~~~ir------~~~~~~~~~~IlYGG-SV~~~N~~~l~~  188 (205)
T TIGR00419       136 VEPPELIGTGIPVSPAQPEVVHGSVR------AVKEVNESVRVLCGA-GISTGEDAELAA  188 (205)
T ss_pred             ECCHHHhCCCCCCCHHHHHHHHHHHH------hhhhhcCCceEEEeC-CCCHHHHHHHhc
Confidence            99999999999999999999999999      344567889999999 999999999864

Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.

>PRK04302 triosephosphate isomerase; Provisional

Probab=100.00  E-value=5.7e-46  Score=323.61  Aligned_cols=187  Identities=24%  Similarity=0.276  Sum_probs=160.0

Q ss_pred             CCcceEEEecccCC--CHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCccccc
Q 026522            2 GRKFFVGGNWKCNG--TPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEI   79 (237)
Q Consensus         2 ~r~~~i~~NWKmn~--~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGei   79 (237)
                      ||+|+|++|||||+  +.+++.+|++.+.+.  +...++++++||||++|..+.+..  ++.++|||+++.+.|+||||+
T Consensus         1 m~~~~~~~n~K~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~l~~v~~~~--~i~v~aq~~~~~~~G~~tg~~   76 (223)
T PRK04302          1 MKYPIILVNFKTYPEATGKDALEIAKAAEKV--SKETGVRIAVAPQALDIRRVAEEV--DIPVYAQHVDPVEPGSHTGHI   76 (223)
T ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHhc--cccCCCEEEEECCHHHHHHHHHhc--CCeEEeccCCCCCCCCchhhh
Confidence            38899999999999  689999999988763  223468999999999999988764  789999999999999999999


Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      |++||+++|+++||+||||||..|+|    +++|++.|.++||.||+|+||..              |++.+.    ..+
T Consensus        77 ~~~~l~~~G~~~vii~~ser~~~~~e----~~~~v~~a~~~Gl~~I~~v~~~~--------------~~~~~~----~~~  134 (223)
T PRK04302         77 LPEAVKDAGAVGTLINHSERRLTLAD----IEAVVERAKKLGLESVVCVNNPE--------------TSAAAA----ALG  134 (223)
T ss_pred             HHHHHHHcCCCEEEEeccccccCHHH----HHHHHHHHHHCCCeEEEEcCCHH--------------HHHHHh----cCC
Confidence            99999999999999999999998887    77888999999999999999942              333322    245


Q ss_pred             CeEEEEcccccccCCCC---CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          160 NIVLAYEPVWAIGTGKV---ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~---as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      +.+|+|||+|+||||+.   ++|++++++++.||+.         ..++||+||| ||+..|....++
T Consensus       135 ~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~---------~~~~pvi~Gg-gI~~~e~~~~~~  192 (223)
T PRK04302        135 PDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV---------NPDVKVLCGA-GISTGEDVKAAL  192 (223)
T ss_pred             CCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc---------cCCCEEEEEC-CCCCHHHHHHHH
Confidence            67999999999999977   7899999999999974         2358999999 997777666544

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=97.79  E-value=0.00012  Score=65.75  Aligned_cols=112  Identities=23%  Similarity=0.190  Sum_probs=79.2

Q ss_pred             cCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEE-EeCCcHHHHhcCCcHHHHHHHHHHHHhccCC
Q 026522           79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA-CVGETLEQREAGSTMDVVAAQTKAIADRVSS  157 (237)
Q Consensus        79 iSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIv-CiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~  157 (237)
                      =-.++++++|++.+||-    +.-+.|..+.+    +.+.++||.+|+ |.-.+.++|            ++.+.+    
T Consensus       108 ~f~~~~~~aGvdGviip----DLp~ee~~~~~----~~~~~~gl~~I~lvap~t~~er------------i~~i~~----  163 (258)
T PRK13111        108 RFAADAAEAGVDGLIIP----DLPPEEAEELR----AAAKKHGLDLIFLVAPTTTDER------------LKKIAS----  163 (258)
T ss_pred             HHHHHHHHcCCcEEEEC----CCCHHHHHHHH----HHHHHcCCcEEEEeCCCCCHHH------------HHHHHH----
Confidence            34899999999999995    44455555554    888999999999 777775554            222222    


Q ss_pred             CCCeEEEEccccccc-CCCC-CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHccc
Q 026522          158 WSNIVLAYEPVWAIG-TGKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLSF  227 (237)
Q Consensus       158 ~~~iiIAYEPvWAIG-tG~~-as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~~  227 (237)
                      ..+-.|.|  +-.+| ||.. ..++.+.+..+.||+.          .++||+.|+ ++ +|+++.+++...-
T Consensus       164 ~s~gfIY~--vs~~GvTG~~~~~~~~~~~~i~~vk~~----------~~~pv~vGf-GI~~~e~v~~~~~~AD  223 (258)
T PRK13111        164 HASGFVYY--VSRAGVTGARSADAADLAELVARLKAH----------TDLPVAVGF-GISTPEQAAAIAAVAD  223 (258)
T ss_pred             hCCCcEEE--EeCCCCCCcccCCCccHHHHHHHHHhc----------CCCcEEEEc-ccCCHHHHHHHHHhCC
Confidence            12334555  44577 7764 4567778788888863          248999999 99 8899999886533

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=97.21  E-value=0.046  Score=47.23  Aligned_cols=166  Identities=13%  Similarity=0.027  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEE---eeecccccc--CcCcccccCHHHHHhCCCCeE
Q 026522           18 EEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV---AAQNCWVKK--GGAFTGEISAEMLVNLEIPWV   92 (237)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~i---gAQnv~~~~--~GA~TGeiSa~mLkd~G~~~v   92 (237)
                      ....++++...+      .++..+...++..+..+.+.  ..+.+   -.|+....+  -|+++.+  .+++++.|++++
T Consensus        27 ~~i~~~a~~~~~------~G~~~~~~~~~~~~~~i~~~--~~iPil~~~~~~~~~~~~~ig~~~~~--~~~a~~aGad~I   96 (219)
T cd04729          27 EIMAAMALAAVQ------GGAVGIRANGVEDIRAIRAR--VDLPIIGLIKRDYPDSEVYITPTIEE--VDALAAAGADII   96 (219)
T ss_pred             HHHHHHHHHHHH------CCCeEEEcCCHHHHHHHHHh--CCCCEEEEEecCCCCCCceeCCCHHH--HHHHHHcCCCEE
Confidence            445555555443      23444445777777777654  23443   357664222  3565554  489999999999


Q ss_pred             EecccccccccccCHHHHHHHHHHHHHCC-CeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccc
Q 026522           93 ILGHSERRLILNELNEFVGDKVAYALSQG-LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAI  171 (237)
Q Consensus        93 iIGHSERR~~f~Etd~~V~~Kv~~al~~g-l~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAI  171 (237)
                      ++.+++++.-.+|..+.+   ++.+.+.| +..++++- |.++.             ....+    ..-.+|..++.=..
T Consensus        97 ~~~~~~~~~p~~~~~~~~---i~~~~~~g~~~iiv~v~-t~~ea-------------~~a~~----~G~d~i~~~~~g~t  155 (219)
T cd04729          97 ALDATDRPRPDGETLAEL---IKRIHEEYNCLLMADIS-TLEEA-------------LNAAK----LGFDIIGTTLSGYT  155 (219)
T ss_pred             EEeCCCCCCCCCcCHHHH---HHHHHHHhCCeEEEECC-CHHHH-------------HHHHH----cCCCEEEccCcccc
Confidence            999999874333333333   35566666 76666653 33321             11111    12223433332100


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHcc
Q 026522          172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLS  226 (237)
Q Consensus       172 GtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~  226 (237)
                      +......... -+..+.+|+.+          ++||+.+| ++ +++|+.+++..|
T Consensus       156 ~~~~~~~~~~-~~~l~~i~~~~----------~ipvia~G-GI~~~~~~~~~l~~G  199 (219)
T cd04729         156 EETAKTEDPD-FELLKELRKAL----------GIPVIAEG-RINSPEQAAKALELG  199 (219)
T ss_pred             ccccCCCCCC-HHHHHHHHHhc----------CCCEEEeC-CCCCHHHHHHHHHCC
Confidence            1111011111 12334444321          38999999 99 799999988765

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PLN02591 tryptophan synthase

Probab=97.19  E-value=0.0043  Score=55.56  Aligned_cols=105  Identities=20%  Similarity=0.236  Sum_probs=73.2

Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCc-HHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET-LEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt-~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      .+.+++.|++.+||=    ..-+.|.++..    +.|.++||.+|+||--| .++|            ++.+.+.   ..
T Consensus        99 ~~~~~~aGv~Gviip----DLP~ee~~~~~----~~~~~~gl~~I~lv~Ptt~~~r------------i~~ia~~---~~  155 (250)
T PLN02591         99 MATIKEAGVHGLVVP----DLPLEETEALR----AEAAKNGIELVLLTTPTTPTER------------MKAIAEA---SE  155 (250)
T ss_pred             HHHHHHcCCCEEEeC----CCCHHHHHHHH----HHHHHcCCeEEEEeCCCCCHHH------------HHHHHHh---CC
Confidence            678999999999997    34455555555    88999999999999554 3444            2333321   12


Q ss_pred             CeEEEEccccccc----CCCC-CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHc
Q 026522          160 NIVLAYEPVWAIG----TGKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLL  225 (237)
Q Consensus       160 ~iiIAYEPvWAIG----tG~~-as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~  225 (237)
                      .++  |    .|+    ||.. ..++++.+..+.+|+.          .++||+.|- +++ +++++.++..
T Consensus       156 gFI--Y----~Vs~~GvTG~~~~~~~~~~~~i~~vk~~----------~~~Pv~vGF-GI~~~e~v~~~~~~  210 (250)
T PLN02591        156 GFV--Y----LVSSTGVTGARASVSGRVESLLQELKEV----------TDKPVAVGF-GISKPEHAKQIAGW  210 (250)
T ss_pred             CcE--E----EeeCCCCcCCCcCCchhHHHHHHHHHhc----------CCCceEEeC-CCCCHHHHHHHHhc
Confidence            232  2    444    4433 2378888888888863          248999999 999 9999997776

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=96.99  E-value=0.0031  Score=58.43  Aligned_cols=124  Identities=15%  Similarity=0.249  Sum_probs=86.5

Q ss_pred             ccccCcCcccc---cCHHHHHhC-CCCeEEe-cccccccccccCHHHHHHHHHHHHHCCCeE-EEEeCCcHHHHhcCCcH
Q 026522           68 WVKKGGAFTGE---ISAEMLVNL-EIPWVIL-GHSERRLILNELNEFVGDKVAYALSQGLKV-IACVGETLEQREAGSTM  141 (237)
Q Consensus        68 ~~~~~GA~TGe---iSa~mLkd~-G~~~viI-GHSERR~~f~Etd~~V~~Kv~~al~~gl~p-IvCiGEt~e~r~~g~~~  141 (237)
                      =+...|+||-+   -.+.|.+++ |.+|+=+ =|.|+|..+.+..++| ++.+...+.|+.+ +||.....+.|      
T Consensus       140 lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v-~aa~~L~~~Gf~v~~yc~~d~~~a~------  212 (326)
T PRK11840        140 LPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETL-KATEILVKEGFQVMVYCSDDPIAAK------  212 (326)
T ss_pred             CccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHHH------
Confidence            35677999887   457788887 4577633 3778999999888777 3334444459999 99998764332      


Q ss_pred             HHHHHHHHHHHhccCCCCCeEEEEcc-cccccCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-Chhh
Q 026522          142 DVVAAQTKAIADRVSSWSNIVLAYEP-VWAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSH  218 (237)
Q Consensus       142 ~vl~~Ql~~~l~~i~~~~~iiIAYEP-vWAIGtG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~N  218 (237)
                           ++    ..   ...  +|+|| .-.||||+.. +|+.++.+.+.              ..+||+.|+ ++ +|+.
T Consensus       213 -----~l----~~---~g~--~avmPl~~pIGsg~gv~~p~~i~~~~e~--------------~~vpVivdA-GIg~~sd  263 (326)
T PRK11840        213 -----RL----ED---AGA--VAVMPLGAPIGSGLGIQNPYTIRLIVEG--------------ATVPVLVDA-GVGTASD  263 (326)
T ss_pred             -----HH----Hh---cCC--EEEeeccccccCCCCCCCHHHHHHHHHc--------------CCCcEEEeC-CCCCHHH
Confidence                 22    22   233  89999 9999999997 55555433322              248999998 87 4788


Q ss_pred             HHHHHHccc
Q 026522          219 VLVHLLLSF  227 (237)
Q Consensus       219 a~~~~~~~~  227 (237)
                      +...+-+|+
T Consensus       264 a~~AmelGa  272 (326)
T PRK11840        264 AAVAMELGC  272 (326)
T ss_pred             HHHHHHcCC
Confidence            888877775

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=96.87  E-value=0.037  Score=48.94  Aligned_cols=171  Identities=14%  Similarity=0.127  Sum_probs=99.1

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccH-----HH------------HHHhcC--CCcEEeeecc-ccccCc
Q 026522           14 NGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFL-----GL------------VKSSLR--PGFHVAAQNC-WVKKGG   73 (237)
Q Consensus        14 n~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L-----~~------------~~~~~~--~~i~igAQnv-~~~~~G   73 (237)
                      +.+.++..++++.+.+. .   +-+|+.+-+|.+..     ..            +.+.++  .++.+   .+ ..... 
T Consensus        14 ~p~~~~~~~~~~~l~~~-a---d~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl---~lM~y~n~-   85 (244)
T PRK13125         14 YPNVESFKEFIIGLVEL-V---DILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPI---ILMTYLED-   85 (244)
T ss_pred             CCCHHHHHHHHHHHHhh-C---CEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCE---EEEEecch-
Confidence            45778888888877653 2   45788775555521     11            111111  23333   11 11111 


Q ss_pred             CcccccC-HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 026522           74 AFTGEIS-AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA  152 (237)
Q Consensus        74 A~TGeiS-a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l  152 (237)
                      -.+|.-. .+.+++.|++++++ |.    ..-|+.+...+=++.+.++|+.+++|+.-+..       .    +.++.++
T Consensus        86 ~~~~~~~~i~~~~~~Gadgvii-~d----lp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~-------~----e~l~~~~  149 (244)
T PRK13125         86 YVDSLDNFLNMARDVGADGVLF-PD----LLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP-------D----LLIHRLS  149 (244)
T ss_pred             hhhCHHHHHHHHHHcCCCEEEE-CC----CCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC-------H----HHHHHHH
Confidence            1233333 67899999999999 31    11233334445558899999999999986421       1    1233444


Q ss_pred             hccCCCCC-eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHcc
Q 026522          153 DRVSSWSN-IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLS  226 (237)
Q Consensus       153 ~~i~~~~~-iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~  226 (237)
                      +..   +. +++..+|.    ||.. =++++.+..+.+|+..         ++.+|..|| +| +++|++.++.-|
T Consensus       150 ~~~---~~~l~msv~~~----~g~~-~~~~~~~~i~~lr~~~---------~~~~i~v~g-GI~~~e~i~~~~~~g  207 (244)
T PRK13125        150 KLS---PLFIYYGLRPA----TGVP-LPVSVERNIKRVRNLV---------GNKYLVVGF-GLDSPEDARDALSAG  207 (244)
T ss_pred             HhC---CCEEEEEeCCC----CCCC-chHHHHHHHHHHHHhc---------CCCCEEEeC-CcCCHHHHHHHHHcC
Confidence            421   22 33577885    4543 3555565666666542         124799999 99 999999976554

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=96.78  E-value=0.15  Score=43.02  Aligned_cols=115  Identities=15%  Similarity=0.068  Sum_probs=67.2

Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      +++++++|++++++ |.+-      ++ ...+-++.+.+.|+.+++=+.-+.       .    .++++......    .
T Consensus        72 ~~~~~~~gadgv~v-h~~~------~~-~~~~~~~~~~~~g~~~~~~~~~~t-------~----~e~~~~~~~~~----d  128 (210)
T TIGR01163        72 IEDFAEAGADIITV-HPEA------SE-HIHRLLQLIKDLGAKAGIVLNPAT-------P----LEFLEYVLPDV----D  128 (210)
T ss_pred             HHHHHHcCCCEEEE-ccCC------ch-hHHHHHHHHHHcCCcEEEEECCCC-------C----HHHHHHHHhhC----C
Confidence            88999999999988 6532      22 233444777788988877543220       1    11233332221    1


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS  226 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~  226 (237)
                       .|.|=|+..-+||....+... +..+.+|+.+.+.     ...+||+-+| +++++|+++++.-|
T Consensus       129 -~i~~~~~~~g~tg~~~~~~~~-~~i~~i~~~~~~~-----~~~~~i~v~G-GI~~env~~l~~~g  186 (210)
T TIGR01163       129 -LVLLMSVNPGFGGQKFIPDTL-EKIREVRKMIDEN-----GLSILIEVDG-GVNDDNARELAEAG  186 (210)
T ss_pred             -EEEEEEEcCCCCcccccHHHH-HHHHHHHHHHHhc-----CCCceEEEEC-CcCHHHHHHHHHcC
Confidence             233434444456655445444 4456666655321     2346899999 99999999977544

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=96.68  E-value=0.021  Score=50.52  Aligned_cols=106  Identities=23%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             HHHHHhCCCCeEEec--ccccccccccCHHHHHHHHHHHHHCCCeEEE-EeCCcHHHHhcCCcHHHHHHHHHHHHhccCC
Q 026522           81 AEMLVNLEIPWVILG--HSERRLILNELNEFVGDKVAYALSQGLKVIA-CVGETLEQREAGSTMDVVAAQTKAIADRVSS  157 (237)
Q Consensus        81 a~mLkd~G~~~viIG--HSERR~~f~Etd~~V~~Kv~~al~~gl~pIv-CiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~  157 (237)
                      .+.+++.|++.+++-  |.|      |.++.    ++.+.++|+.+++ |--.|.++|            ++.+++.  .
T Consensus        97 i~~~~~aG~~giiipDl~~e------e~~~~----~~~~~~~g~~~i~~i~P~T~~~~------------i~~i~~~--~  152 (242)
T cd04724          97 LRDAKEAGVDGLIIPDLPPE------EAEEF----REAAKEYGLDLIFLVAPTTPDER------------IKKIAEL--A  152 (242)
T ss_pred             HHHHHHCCCcEEEECCCCHH------HHHHH----HHHHHHcCCcEEEEeCCCCCHHH------------HHHHHhh--C
Confidence            678999999999984  222      33333    4888999999988 555554433            2233331  1


Q ss_pred             CCC-eEEEEcccccccCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHc
Q 026522          158 WSN-IVLAYEPVWAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLL  225 (237)
Q Consensus       158 ~~~-iiIAYEPvWAIGtG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~  225 (237)
                      ..- .+++.+|+    ||... -++.+.+.++.+|+.          .++||+.|| +|+ ++|++.+...
T Consensus       153 ~~~vy~~s~~g~----tG~~~~~~~~~~~~i~~lr~~----------~~~pI~vgg-GI~~~e~~~~~~~~  208 (242)
T cd04724         153 SGFIYYVSRTGV----TGARTELPDDLKELIKRIRKY----------TDLPIAVGF-GISTPEQAAEVAKY  208 (242)
T ss_pred             CCCEEEEeCCCC----CCCccCCChhHHHHHHHHHhc----------CCCcEEEEc-cCCCHHHHHHHHcc
Confidence            112 33567885    44322 345566666667653          248999999 999 6699997654

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=96.20  E-value=0.25  Score=41.59  Aligned_cols=114  Identities=14%  Similarity=0.084  Sum_probs=67.0

Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCc-HHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET-LEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt-~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      .+++.++|++++++        +.+..+....-++.+.+.|+.+.+=++.+ .++            +++.....     
T Consensus        73 ~~~~~~~g~dgv~v--------h~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~~~-----  127 (211)
T cd00429          73 IEAFAKAGADIITF--------HAEATDHLHRTIQLIKELGMKAGVALNPGTPVE------------VLEPYLDE-----  127 (211)
T ss_pred             HHHHHHcCCCEEEE--------CccchhhHHHHHHHHHHCCCeEEEEecCCCCHH------------HHHHHHhh-----
Confidence            77888999999865        11111233344677888998887766532 221            12222221     


Q ss_pred             CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522          160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS  226 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~  226 (237)
                      ...|.|=|++.-+||....+ ...+..+.+|+...+.     +.++|++-+| +++++|+.+++..|
T Consensus       128 ~d~i~~~~~~~g~tg~~~~~-~~~~~i~~~~~~~~~~-----~~~~pi~v~G-GI~~env~~~~~~g  187 (211)
T cd00429         128 VDLVLVMSVNPGFGGQKFIP-EVLEKIRKLRELIPEN-----NLNLLIEVDG-GINLETIPLLAEAG  187 (211)
T ss_pred             CCEEEEEEECCCCCCcccCH-HHHHHHHHHHHHHHhc-----CCCeEEEEEC-CCCHHHHHHHHHcC
Confidence            12333334443445654433 4445566677665322     2347999999 99999999987654

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=95.45  E-value=1.1  Score=36.18  Aligned_cols=136  Identities=18%  Similarity=0.069  Sum_probs=77.8

Q ss_pred             CCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhc
Q 026522           58 PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREA  137 (237)
Q Consensus        58 ~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~  137 (237)
                      .++.+++|....... .+ -+.++..+++.|++++.++.+....  -+....+-++++... .++..++.+.-..+... 
T Consensus        56 ~~~~~~~~~~~~~~~-~~-~~~~a~~~~~~g~d~v~l~~~~~~~--~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~~-  129 (200)
T cd04722          56 TDLPLGVQLAINDAA-AA-VDIAAAAARAAGADGVEIHGAVGYL--AREDLELIRELREAV-PDVKVVVKLSPTGELAA-  129 (200)
T ss_pred             cCCcEEEEEccCCch-hh-hhHHHHHHHHcCCCEEEEeccCCcH--HHHHHHHHHHHHHhc-CCceEEEEECCCCccch-
Confidence            456788887653321 11 1123789999999999999887521  111222333444333 37877777754321100 


Q ss_pred             CCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCCh-
Q 026522          138 GSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINV-  216 (237)
Q Consensus       138 g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~-  216 (237)
                              .+    +.   ...-..|.+.+.|.-+++....+..    ...++.. +.      ..++||+++| +++. 
T Consensus       130 --------~~----~~---~~g~d~i~~~~~~~~~~~~~~~~~~----~~~~~~~-~~------~~~~pi~~~G-Gi~~~  182 (200)
T cd04722         130 --------AA----AE---EAGVDEVGLGNGGGGGGGRDAVPIA----DLLLILA-KR------GSKVPVIAGG-GINDP  182 (200)
T ss_pred             --------hh----HH---HcCCCEEEEcCCcCCCCCccCchhH----HHHHHHH-Hh------cCCCCEEEEC-CCCCH
Confidence                    01    11   1223467888888766666554421    1122211 11      2348999999 9988 


Q ss_pred             hhHHHHHHcc
Q 026522          217 SHVLVHLLLS  226 (237)
Q Consensus       217 ~Na~~~~~~~  226 (237)
                      +|+.+++..|
T Consensus       183 ~~~~~~~~~G  192 (200)
T cd04722         183 EDAAEALALG  192 (200)
T ss_pred             HHHHHHHHhC
Confidence            9999988864

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=95.19  E-value=0.52  Score=42.19  Aligned_cols=107  Identities=21%  Similarity=0.237  Sum_probs=68.5

Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI-vCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      .+.+++.|++.+|+=        .+..+....=++.+.++|+.++ +|--.|..+|            ++.+++..   .
T Consensus       108 ~~~~~~aGvdgviip--------Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~er------------i~~i~~~~---~  164 (256)
T TIGR00262       108 YAKCKEVGVDGVLVA--------DLPLEESGDLVEAAKKHGVKPIFLVAPNADDER------------LKQIAEKS---Q  164 (256)
T ss_pred             HHHHHHcCCCEEEEC--------CCChHHHHHHHHHHHHCCCcEEEEECCCCCHHH------------HHHHHHhC---C
Confidence            778999999999883        3344455555688999999988 6666664443            33333321   1


Q ss_pred             CeE--EEEccccccc-CCCC-CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHcc
Q 026522          160 NIV--LAYEPVWAIG-TGKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLLS  226 (237)
Q Consensus       160 ~ii--IAYEPvWAIG-tG~~-as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~~  226 (237)
                      .++  +..+     | ||.. .-++++.+.++.+|+..          +.||..|| +++ |++++.+...|
T Consensus       165 gfiy~vs~~-----G~TG~~~~~~~~~~~~i~~lr~~~----------~~pi~vgf-GI~~~e~~~~~~~~G  220 (256)
T TIGR00262       165 GFVYLVSRA-----GVTGARNRAASALNELVKRLKAYS----------AKPVLVGF-GISKPEQVKQAIDAG  220 (256)
T ss_pred             CCEEEEECC-----CCCCCcccCChhHHHHHHHHHhhc----------CCCEEEeC-CCCCHHHHHHHHHcC
Confidence            122  2322     3 5553 23444666666666531          25899999 997 99999976653

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=95.17  E-value=0.079  Score=47.50  Aligned_cols=120  Identities=17%  Similarity=0.254  Sum_probs=78.8

Q ss_pred             cccCcCcccc---cCHHHHHhCCC-CeE---EecccccccccccCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCc
Q 026522           69 VKKGGAFTGE---ISAEMLVNLEI-PWV---ILGHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGST  140 (237)
Q Consensus        69 ~~~~GA~TGe---iSa~mLkd~G~-~~v---iIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI-vCiGEt~e~r~~g~~  140 (237)
                      +...|+||-+   -.+.|.++++. +|+   ++|.  -+.++.+..++| ++.+...+.|+.++ +|......-      
T Consensus        67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d--~~~Llpd~~~tv-~aa~~L~~~Gf~vlpyc~dd~~~a------  137 (248)
T cd04728          67 PNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGD--DKTLLPDPIETL-KAAEILVKEGFTVLPYCTDDPVLA------  137 (248)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecC--ccccccCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHH------
Confidence            4577999877   35677788754 555   3444  556677766665 34444445599999 999887433      


Q ss_pred             HHHHHHHHHHHHhccCCCCCeEEEEccc--ccccCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-Ch
Q 026522          141 MDVVAAQTKAIADRVSSWSNIVLAYEPV--WAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NV  216 (237)
Q Consensus       141 ~~vl~~Ql~~~l~~i~~~~~iiIAYEPv--WAIGtG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~  216 (237)
                           ++|..       .....|   |+  -.||||+.. +|+.++    .|++.          .++||+.+| ++ +|
T Consensus       138 -----r~l~~-------~G~~~v---mPlg~pIGsg~Gi~~~~~I~----~I~e~----------~~vpVI~eg-GI~tp  187 (248)
T cd04728         138 -----KRLED-------AGCAAV---MPLGSPIGSGQGLLNPYNLR----IIIER----------ADVPVIVDA-GIGTP  187 (248)
T ss_pred             -----HHHHH-------cCCCEe---CCCCcCCCCCCCCCCHHHHH----HHHHh----------CCCcEEEeC-CCCCH
Confidence                 22322       233444   99  569999876 555444    44432          248999999 88 48


Q ss_pred             hhHHHHHHccc
Q 026522          217 SHVLVHLLLSF  227 (237)
Q Consensus       217 ~Na~~~~~~~~  227 (237)
                      +-+...+.+|+
T Consensus       188 eda~~AmelGA  198 (248)
T cd04728         188 SDAAQAMELGA  198 (248)
T ss_pred             HHHHHHHHcCC
Confidence            99999888775

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=95.14  E-value=0.29  Score=42.03  Aligned_cols=108  Identities=11%  Similarity=-0.050  Sum_probs=65.5

Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      .++.+.++|++.|++|.+-...      +.+.+=++.+...|+.+++++- +.++             ++.+..    +.
T Consensus        86 ~v~~~~~~Gad~v~l~~~~~~~------~~~~~~~~~~~~~g~~~~v~v~-~~~e-------------~~~~~~----~g  141 (217)
T cd00331          86 QIYEARAAGADAVLLIVAALDD------EQLKELYELARELGMEVLVEVH-DEEE-------------LERALA----LG  141 (217)
T ss_pred             HHHHHHHcCCCEEEEeeccCCH------HHHHHHHHHHHHcCCeEEEEEC-CHHH-------------HHHHHH----cC
Confidence            5788999999999999986542      3344444667889999999995 3322             222222    23


Q ss_pred             CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHcc
Q 026522          160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLLS  226 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~~  226 (237)
                      ..++.|=|..    +....++ . +....+++.    +    ...+|++.+| +++ ++|+.+++..|
T Consensus       142 ~~~i~~t~~~----~~~~~~~-~-~~~~~l~~~----~----~~~~pvia~g-GI~s~edi~~~~~~G  194 (217)
T cd00331         142 AKIIGINNRD----LKTFEVD-L-NTTERLAPL----I----PKDVILVSES-GISTPEDVKRLAEAG  194 (217)
T ss_pred             CCEEEEeCCC----ccccCcC-H-HHHHHHHHh----C----CCCCEEEEEc-CCCCHHHHHHHHHcC
Confidence            3456665432    1211122 2 222222221    1    1247999999 995 69999998875

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=95.06  E-value=0.83  Score=38.92  Aligned_cols=111  Identities=16%  Similarity=0.111  Sum_probs=62.4

Q ss_pred             HHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCC-cHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGE-TLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        82 ~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE-t~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      +.++++|++++++        +.+.++....-++.+.+.|+.+.+=++. +..++            ++......   +-
T Consensus        78 ~~~~~~g~d~v~v--------h~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~------------~~~~~~~~---d~  134 (220)
T PRK05581         78 PDFAKAGADIITF--------HVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEP------------LEDVLDLL---DL  134 (220)
T ss_pred             HHHHHcCCCEEEE--------eeccchhHHHHHHHHHHcCCEEEEEECCCCCHHH------------HHHHHhhC---CE
Confidence            6677999999644        2222233344468888899988876652 32222            12222211   11


Q ss_pred             -eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          161 -IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       161 -iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                       .+.+++|   -+||. .......+..+.+|++....     +-..+|.-+| +++++|+.++...
T Consensus       135 i~~~~~~~---g~tg~-~~~~~~~~~i~~~~~~~~~~-----~~~~~i~v~G-GI~~~nv~~l~~~  190 (220)
T PRK05581        135 VLLMSVNP---GFGGQ-KFIPEVLEKIRELRKLIDER-----GLDILIEVDG-GINADNIKECAEA  190 (220)
T ss_pred             EEEEEECC---CCCcc-cccHHHHHHHHHHHHHHHhc-----CCCceEEEEC-CCCHHHHHHHHHc
Confidence             1234445   34554 44444455566666654320     1014577888 8999999998763

>PRK00208 thiG thiazole synthase; Reviewed

Probab=94.97  E-value=0.1  Score=46.89  Aligned_cols=120  Identities=17%  Similarity=0.220  Sum_probs=78.2

Q ss_pred             cccCcCcccc---cCHHHHHhCCC-CeE---EecccccccccccCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCc
Q 026522           69 VKKGGAFTGE---ISAEMLVNLEI-PWV---ILGHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGST  140 (237)
Q Consensus        69 ~~~~GA~TGe---iSa~mLkd~G~-~~v---iIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI-vCiGEt~e~r~~g~~  140 (237)
                      +...|++|-|   -.+.|.++++. +|+   +||.  .+..+.+..++| ++.+...+.|+.++ +|.....+-      
T Consensus        67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d--~~~llpd~~~tv-~aa~~L~~~Gf~vlpyc~~d~~~a------  137 (250)
T PRK00208         67 PNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGD--DKTLLPDPIETL-KAAEILVKEGFVVLPYCTDDPVLA------  137 (250)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecC--CCCCCcCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHH------
Confidence            5577888877   35677788764 555   4554  455566666655 44444445599999 999876432      


Q ss_pred             HHHHHHHHHHHHhccCCCCCeEEEEccc--ccccCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-Ch
Q 026522          141 MDVVAAQTKAIADRVSSWSNIVLAYEPV--WAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NV  216 (237)
Q Consensus       141 ~~vl~~Ql~~~l~~i~~~~~iiIAYEPv--WAIGtG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~  216 (237)
                           ++|..       .....|   |+  -.||||+.. +|+.    .+.|++.          .++||+.+| ++ +|
T Consensus       138 -----k~l~~-------~G~~~v---mPlg~pIGsg~gi~~~~~----i~~i~e~----------~~vpVIvea-GI~tp  187 (250)
T PRK00208        138 -----KRLEE-------AGCAAV---MPLGAPIGSGLGLLNPYN----LRIIIEQ----------ADVPVIVDA-GIGTP  187 (250)
T ss_pred             -----HHHHH-------cCCCEe---CCCCcCCCCCCCCCCHHH----HHHHHHh----------cCCeEEEeC-CCCCH
Confidence                 22322       234445   99  569999876 4444    3444442          248999999 88 58


Q ss_pred             hhHHHHHHccc
Q 026522          217 SHVLVHLLLSF  227 (237)
Q Consensus       217 ~Na~~~~~~~~  227 (237)
                      +-+...+.+|+
T Consensus       188 eda~~AmelGA  198 (250)
T PRK00208        188 SDAAQAMELGA  198 (250)
T ss_pred             HHHHHHHHcCC
Confidence            99999888764

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=94.54  E-value=2.5  Score=35.70  Aligned_cols=169  Identities=14%  Similarity=0.110  Sum_probs=86.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCCCCceEE--EcCccc--cHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCCCCe
Q 026522           16 TPEEVKKIVSVLNEGQVPSSDVVEVV--VSPPFV--FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPW   91 (237)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~v~--i~Pp~~--~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~   91 (237)
                      +.+++.++++.+ ...   -.-+++.  ...++.  .+..+++.. ++..+++ |++..+.|.|    .++++.++|+++
T Consensus        10 ~~~~a~~~~~~l-~~~---v~~iev~~~l~~~~g~~~i~~l~~~~-~~~~i~~-d~k~~d~~~~----~~~~~~~~Gad~   79 (206)
T TIGR03128        10 DIEEALELAEKV-ADY---VDIIEIGTPLIKNEGIEAVKEMKEAF-PDRKVLA-DLKTMDAGEY----EAEQAFAAGADI   79 (206)
T ss_pred             CHHHHHHHHHHc-ccC---eeEEEeCCHHHHHhCHHHHHHHHHHC-CCCEEEE-EEeeccchHH----HHHHHHHcCCCE
Confidence            567888888776 311   1224442  222222  122222221 3455666 6666666654    689999999999


Q ss_pred             EEecccccccccccCHHHHHHHHHHHHHCCCeEEEE-eCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEccccc
Q 026522           92 VILGHSERRLILNELNEFVGDKVAYALSQGLKVIAC-VGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWA  170 (237)
Q Consensus        92 viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvC-iGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWA  170 (237)
                      +.+ |.|.      +...+.+=++.+.+.|+.+++= .+-.        |   ..++++...+    ..-.+|...|...
T Consensus        80 i~v-h~~~------~~~~~~~~i~~~~~~g~~~~~~~~~~~--------t---~~~~~~~~~~----~g~d~v~~~pg~~  137 (206)
T TIGR03128        80 VTV-LGVA------DDATIKGAVKAAKKHGKEVQVDLINVK--------D---KVKRAKELKE----LGADYIGVHTGLD  137 (206)
T ss_pred             EEE-eccC------CHHHHHHHHHHHHHcCCEEEEEecCCC--------C---hHHHHHHHHH----cCCCEEEEcCCcC
Confidence            974 5553      1123344447788899999863 2311        0   1122323332    1223567777332


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522          171 IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF  230 (237)
Q Consensus       171 IGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~  230 (237)
                      -.+-.+..++.+.+    +++.+    .     ..+|.-=| +++++|+.+++..|.-++
T Consensus       138 ~~~~~~~~~~~i~~----l~~~~----~-----~~~i~v~G-GI~~~n~~~~~~~Ga~~v  183 (206)
T TIGR03128       138 EQAKGQNPFEDLQT----ILKLV----K-----EARVAVAG-GINLDTIPDVIKLGPDIV  183 (206)
T ss_pred             cccCCCCCHHHHHH----HHHhc----C-----CCcEEEEC-CcCHHHHHHHHHcCCCEE
Confidence            11111223333332    22221    1     24565235 589999999887665543

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=93.71  E-value=1  Score=39.42  Aligned_cols=118  Identities=14%  Similarity=0.179  Sum_probs=71.2

Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      .+.+.+.|++++.+ |.|-       ...+.+=++...++|+++-+-+.=..       .    .+.+..+++.++  .=
T Consensus        74 i~~~~~~gad~i~~-H~Ea-------~~~~~~~l~~ik~~g~k~GlalnP~T-------p----~~~i~~~l~~~D--~v  132 (220)
T PRK08883         74 IPDFAKAGASMITF-HVEA-------SEHVDRTLQLIKEHGCQAGVVLNPAT-------P----LHHLEYIMDKVD--LI  132 (220)
T ss_pred             HHHHHHhCCCEEEE-cccC-------cccHHHHHHHHHHcCCcEEEEeCCCC-------C----HHHHHHHHHhCC--eE
Confidence            37889999997755 7773       22344455778889999988776421       1    123445555432  12


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccccc
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGC  229 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~  229 (237)
                      ++..-+|-..   |+..-|.... -++.+|+.+.+.     +.+++|.-.| ++|++|+..+..-|.-.
T Consensus       133 lvMtV~PGfg---Gq~fi~~~le-kI~~l~~~~~~~-----~~~~~I~vdG-GI~~eni~~l~~aGAd~  191 (220)
T PRK08883        133 LLMSVNPGFG---GQSFIPHTLD-KLRAVRKMIDES-----GRDIRLEIDG-GVKVDNIREIAEAGADM  191 (220)
T ss_pred             EEEEecCCCC---CceecHhHHH-HHHHHHHHHHhc-----CCCeeEEEEC-CCCHHHHHHHHHcCCCE
Confidence            4567899553   4333333322 233444444321     2358898999 99999999987766543

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=93.04  E-value=2.7  Score=35.19  Aligned_cols=163  Identities=15%  Similarity=0.151  Sum_probs=85.6

Q ss_pred             CCHHHHHHHHHHHhcCCCCCCCCceEEEcCcc------ccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCC
Q 026522           15 GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPF------VFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLE   88 (237)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~------~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G   88 (237)
                      .+.+++.++++.+.+. .   .-+++  -.|+      ..+..+.+.. +++.+.+--... +.+    ..-++.+.++|
T Consensus        10 ~~~~~~~~~~~~l~~~-i---~~iei--g~~~~~~~g~~~i~~i~~~~-~~~~i~~~~~v~-~~~----~~~~~~~~~aG   77 (202)
T cd04726          10 LDLEEALELAKKVPDG-V---DIIEA--GTPLIKSEGMEAVRALREAF-PDKIIVADLKTA-DAG----ALEAEMAFKAG   77 (202)
T ss_pred             CCHHHHHHHHHHhhhc-C---CEEEc--CCHHHHHhCHHHHHHHHHHC-CCCEEEEEEEec-ccc----HHHHHHHHhcC
Confidence            4678888888887664 2   23454  2333      2233333321 355564432211 111    23458899999


Q ss_pred             CCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEE-EeCC-cHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEc
Q 026522           89 IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA-CVGE-TLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYE  166 (237)
Q Consensus        89 ~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIv-CiGE-t~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYE  166 (237)
                      ++++++ |.|-      +.+....=++.+.++|+.+++ |++= |.+++            ++ .+.    ..-.++.+.
T Consensus        78 ad~i~~-h~~~------~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~------------~~-~~~----~~~d~v~~~  133 (202)
T cd04726          78 ADIVTV-LGAA------PLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKR------------AK-LLK----LGVDIVILH  133 (202)
T ss_pred             CCEEEE-EeeC------CHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHH------------HH-HHH----CCCCEEEEc
Confidence            999987 2222      111223334677789999986 4442 22221            11 222    112245556


Q ss_pred             ccccccCC-CCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccc
Q 026522          167 PVWAIGTG-KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFG  228 (237)
Q Consensus       167 PvWAIGtG-~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~  228 (237)
                      |.---++. .....+.+    +.+|+.          .++||.-+| +|+++|+.+++..|.-
T Consensus       134 ~~~~~~~~~~~~~~~~i----~~~~~~----------~~~~i~~~G-GI~~~~i~~~~~~Gad  181 (202)
T cd04726         134 RGIDAQAAGGWWPEDDL----KKVKKL----------LGVKVAVAG-GITPDTLPEFKKAGAD  181 (202)
T ss_pred             CcccccccCCCCCHHHH----HHHHhh----------cCCCEEEEC-CcCHHHHHHHHhcCCC
Confidence            64322222 12223332    223321          248999999 9999999998877643

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=92.26  E-value=2.4  Score=36.50  Aligned_cols=107  Identities=19%  Similarity=0.146  Sum_probs=60.7

Q ss_pred             cCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCC
Q 026522           79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW  158 (237)
Q Consensus        79 iSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~  158 (237)
                      -..+.++++|++.+.++..       ++.+.+    +.+.+.++.+++-+-..              ++++.+.+    .
T Consensus        71 ~~~~~~~~~g~d~v~l~~~-------~~~~~~----~~~~~~~i~~i~~v~~~--------------~~~~~~~~----~  121 (236)
T cd04730          71 ALLEVALEEGVPVVSFSFG-------PPAEVV----ERLKAAGIKVIPTVTSV--------------EEARKAEA----A  121 (236)
T ss_pred             HHHHHHHhCCCCEEEEcCC-------CCHHHH----HHHHHcCCEEEEeCCCH--------------HHHHHHHH----c
Confidence            3578889999999999876       233322    44556788877755321              12222222    1


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCCh-hhHHHHHHcc
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINV-SHVLVHLLLS  226 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~-~Na~~~~~~~  226 (237)
                      ....|.+.+.-.-|++.+.+.. ..+..+.+|+..          ++||+-+| ++++ +|+.+++..|
T Consensus       122 gad~i~~~~~~~~G~~~~~~~~-~~~~i~~i~~~~----------~~Pvi~~G-GI~~~~~v~~~l~~G  178 (236)
T cd04730         122 GADALVAQGAEAGGHRGTFDIG-TFALVPEVRDAV----------DIPVIAAG-GIADGRGIAAALALG  178 (236)
T ss_pred             CCCEEEEeCcCCCCCCCccccC-HHHHHHHHHHHh----------CCCEEEEC-CCCCHHHHHHHHHcC
Confidence            2234566665332333222111 122333333321          47999999 9987 9999988743

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=92.21  E-value=0.13  Score=46.29  Aligned_cols=142  Identities=10%  Similarity=0.035  Sum_probs=73.3

Q ss_pred             CcEEeeeccccccCcCcccccCHHHHHhCCCCeEEe----cccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHH
Q 026522           59 GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVIL----GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQ  134 (237)
Q Consensus        59 ~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viI----GHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~  134 (237)
                      .+.+|-|=+.. +.     .-+...-+..|++|+=+    |+.-.-.=+=|.+.-=..+.++.+...+   -....-...
T Consensus        79 ~~p~GvnvL~n-d~-----~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v---~i~adV~~k  149 (257)
T TIGR00259        79 SIPLGINVLRN-DA-----VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEV---KILADIVVK  149 (257)
T ss_pred             CCCeeeeeecC-CC-----HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCc---EEEeceeec
Confidence            45677654432 21     22456667888888655    4443333333444333345555555333   333332221


Q ss_pred             HhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC
Q 026522          135 REAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI  214 (237)
Q Consensus       135 r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV  214 (237)
                      ...--...-+.+.++.....- ..+-+++ =    --|||.+++++.++.    +|+.         ...+|+|-|| +|
T Consensus       150 h~~~l~~~~~~e~a~~~~~~~-~aDaviv-t----G~~TG~~~d~~~l~~----vr~~---------~~~~Pvllgg-Gv  209 (257)
T TIGR00259       150 HAVHLGNRDLESIALDTVERG-LADAVIL-S----GKTTGTEVDLELLKL----AKET---------VKDTPVLAGS-GV  209 (257)
T ss_pred             ccCcCCCCCHHHHHHHHHHhc-CCCEEEE-C----cCCCCCCCCHHHHHH----HHhc---------cCCCeEEEEC-CC
Confidence            111000111333344333210 0123333 1    225899999988863    3431         2247999999 99


Q ss_pred             ChhhHHHHHHccccc
Q 026522          215 NVSHVLVHLLLSFGC  229 (237)
Q Consensus       215 ~~~Na~~~~~~~~~~  229 (237)
                      +|+|+.+++....|.
T Consensus       210 t~eNv~e~l~~adGv  224 (257)
T TIGR00259       210 NLENVEELLSIADGV  224 (257)
T ss_pred             CHHHHHHHHhhCCEE
Confidence            999999998875554

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=91.48  E-value=0.19  Score=45.22  Aligned_cols=141  Identities=10%  Similarity=0.065  Sum_probs=75.0

Q ss_pred             CcEEeeeccccccCcCcccccCHHHHHhCCCCeEE----ecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHH
Q 026522           59 GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVI----LGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQ  134 (237)
Q Consensus        59 ~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~vi----IGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~  134 (237)
                      .+.+|-|=.. .+     +.-+...-+..|++++=    +|+.-...=+-|.+.-=-.+.++.+... ..|++  .-...
T Consensus        80 ~~p~GVnvL~-nd-----~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~-v~ila--DV~~k  150 (254)
T PF03437_consen   80 SVPVGVNVLR-ND-----PKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGAD-VKILA--DVHVK  150 (254)
T ss_pred             CCCEEeeeec-CC-----CHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCC-eEEEe--eechh
Confidence            5677866443 11     22244556667787763    4444444444455544445666677777 55553  32211


Q ss_pred             HhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC
Q 026522          135 REAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI  214 (237)
Q Consensus       135 r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV  214 (237)
                      ...--...-+.+.++...... ..+-+++ =-    -.||.+++++++++    +|+.         .. +|||-|+ +|
T Consensus       151 h~~~l~~~~~~~~~~~a~~~~-~aDaviV-tG----~~TG~~~~~~~l~~----vr~~---------~~-~PVlvGS-Gv  209 (254)
T PF03437_consen  151 HSSPLATRDLEEAAKDAVERG-GADAVIV-TG----KATGEPPDPEKLKR----VREA---------VP-VPVLVGS-GV  209 (254)
T ss_pred             hcccCCCCCHHHHHHHHHHhc-CCCEEEE-CC----cccCCCCCHHHHHH----HHhc---------CC-CCEEEec-CC
Confidence            111111111233333332211 1122333 11    13688889998764    3442         22 8999999 99


Q ss_pred             ChhhHHHHHHccccc
Q 026522          215 NVSHVLVHLLLSFGC  229 (237)
Q Consensus       215 ~~~Na~~~~~~~~~~  229 (237)
                      |++|+.++|...=|+
T Consensus       210 t~~Ni~~~l~~ADG~  224 (254)
T PF03437_consen  210 TPENIAEYLSYADGA  224 (254)
T ss_pred             CHHHHHHHHHhCCEE
Confidence            999999998765554

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3

Probab=91.31  E-value=1.2  Score=37.14  Aligned_cols=118  Identities=14%  Similarity=0.125  Sum_probs=73.3

Q ss_pred             cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeE-EEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 026522           75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV-IACVGETLEQREAGSTMDVVAAQTKAIAD  153 (237)
Q Consensus        75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~p-IvCiGEt~e~r~~g~~~~vl~~Ql~~~l~  153 (237)
                      |.|++....||+.|+++|+|-=+|-..+   .|+.-..-++.|.++||.. ++-.....       +..--.+|.+-.++
T Consensus         6 ~qg~~dw~~~k~~gi~fviikateG~~~---~D~~~~~n~~~a~~aGl~~G~Yhf~~~~-------~~~~a~~qA~~f~~   75 (181)
T PF01183_consen    6 YQGDIDWQKVKAAGIDFVIIKATEGTSY---VDPYFESNIKNAKAAGLPVGAYHFARAT-------NSSDAEAQADYFLN   75 (181)
T ss_dssp             GGSS-SHHHHHHTTEEEEEEEEEETTTE---E-TTHHHHHHHHHHTTSEEEEEEE--TT-------THCHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHCCCCEEEEEeeeCCCe---ecchHHHHHHHHHHcCCeEEEEEEeccC-------CcccHHHHHHHHHH
Confidence            7899999999999999999988887654   5666777889999999986 44333321       11123466666666


Q ss_pred             cc-CC---CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522          154 RV-SS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG  211 (237)
Q Consensus       154 ~i-~~---~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG  211 (237)
                      .+ ..   .-+++|-+|-.    .....+.++..+.+....+.+.+..|.     -++||.+
T Consensus        76 ~~~~~~~~~~~~~lD~E~~----~~~~~~~~~~~~~~~~f~~~~~~~~G~-----~~~iY~~  128 (181)
T PF01183_consen   76 QVKGGDPGDLPPALDVEDD----KSNNPSKSDNTAWVKAFLDEVEKAAGY-----KPGIYTS  128 (181)
T ss_dssp             CTHTSSTSCS-EEEEE-S-----GGCCSSHHHHHHHHHHHHHHHHHHCTS-----EEEEEEE
T ss_pred             HhcccCCCcceEEEecccc----ccCCCCHHHHHHHHHHHHHHHHHHhCC-----ceeEeec
Confidence            66 21   23467888843    223345555555444444555444442     4889998

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....

>PLN02334 ribulose-phosphate 3-epimerase

Probab=90.78  E-value=7.7  Score=33.71  Aligned_cols=115  Identities=13%  Similarity=0.030  Sum_probs=65.1

Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeC-CcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVG-ETLEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiG-Et~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      .+.+.+.|+++|.+ |-|.     -.+......++.+++.|+.+-+=+. .|..            ++++..++.   ..
T Consensus        81 ~~~~~~~gad~v~v-H~~q-----~~~d~~~~~~~~i~~~g~~iGls~~~~t~~------------~~~~~~~~~---~~  139 (229)
T PLN02334         81 VPDFAKAGASIFTF-HIEQ-----ASTIHLHRLIQQIKSAGMKAGVVLNPGTPV------------EAVEPVVEK---GL  139 (229)
T ss_pred             HHHHHHcCCCEEEE-eecc-----ccchhHHHHHHHHHHCCCeEEEEECCCCCH------------HHHHHHHhc---cC
Confidence            56779999999944 2221     0123466777888889986544443 2322            223334332   00


Q ss_pred             CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccc
Q 026522          160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSF  227 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~  227 (237)
                      ..+|.+=|++.-.||....+..... .+.+|+.+         .+++|.-=| +++++|+.++...|.
T Consensus       140 ~Dyi~~~~v~pg~~~~~~~~~~~~~-i~~~~~~~---------~~~~I~a~G-GI~~e~i~~l~~aGa  196 (229)
T PLN02334        140 VDMVLVMSVEPGFGGQSFIPSMMDK-VRALRKKY---------PELDIEVDG-GVGPSTIDKAAEAGA  196 (229)
T ss_pred             CCEEEEEEEecCCCccccCHHHHHH-HHHHHHhC---------CCCcEEEeC-CCCHHHHHHHHHcCC
Confidence            2345556777644554443433333 33344431         135787777 799999999887764

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=90.30  E-value=4.5  Score=36.48  Aligned_cols=106  Identities=14%  Similarity=0.148  Sum_probs=66.0

Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcH-HHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETL-EQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~-e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      .+.+++.|++.+|+= =+-   +.|.++..    +.+.++|+.+|+=|--+. ++|            ++.+.+.   .+
T Consensus       112 ~~~~~~aGvdgviip-DLP---~ee~~~~~----~~~~~~gi~~I~lv~PtT~~er------------i~~i~~~---a~  168 (263)
T CHL00200        112 IKKISQAGVKGLIIP-DLP---YEESDYLI----SVCNLYNIELILLIAPTSSKSR------------IQKIARA---AP  168 (263)
T ss_pred             HHHHHHcCCeEEEec-CCC---HHHHHHHH----HHHHHcCCCEEEEECCCCCHHH------------HHHHHHh---CC
Confidence            567789999999872 111   33444444    788899999988776552 222            3333321   12


Q ss_pred             CeE--EEEccccccc-CCCC-CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHc
Q 026522          160 NIV--LAYEPVWAIG-TGKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLL  225 (237)
Q Consensus       160 ~ii--IAYEPvWAIG-tG~~-as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~  225 (237)
                      .++  ++. |    | ||.. .-++++.+..+.+|+.          .+.||..|+ +|+ |++++++...
T Consensus       169 gFIY~vS~-~----GvTG~~~~~~~~~~~~i~~ir~~----------t~~Pi~vGF-GI~~~e~~~~~~~~  223 (263)
T CHL00200        169 GCIYLVST-T----GVTGLKTELDKKLKKLIETIKKM----------TNKPIILGF-GISTSEQIKQIKGW  223 (263)
T ss_pred             CcEEEEcC-C----CCCCCCccccHHHHHHHHHHHHh----------cCCCEEEEC-CcCCHHHHHHHHhc
Confidence            222  232 2    3 4443 3457777777777763          137999999 999 9999996655

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=90.09  E-value=3.7  Score=36.92  Aligned_cols=146  Identities=16%  Similarity=0.204  Sum_probs=80.3

Q ss_pred             EEcCccccHHHHHHhcCCCcEEeeecccccc-CcC--cccc------cCHHHHHhCCCCeEEecccccccccccCHHHHH
Q 026522           41 VVSPPFVFLGLVKSSLRPGFHVAAQNCWVKK-GGA--FTGE------ISAEMLVNLEIPWVILGHSERRLILNELNEFVG  111 (237)
Q Consensus        41 ~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~-~GA--~TGe------iSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~  111 (237)
                      .+-|++-.+..+.+.+.  +++-   |=... .|-  ||-+      -...+++++|++.+.+|=--.   -++-|....
T Consensus        35 GlTPS~g~i~~~~~~~~--ipv~---vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~---dg~vD~~~~  106 (248)
T PRK11572         35 GLTPSLGVLKSVRERVT--IPVH---PIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDV---DGHVDMPRM  106 (248)
T ss_pred             CcCCCHHHHHHHHHhcC--CCeE---EEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECC---CCCcCHHHH
Confidence            46788888888776542  2211   00011 122  2222      245778889999999997643   345666666


Q ss_pred             HHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc-C-CCCCeEEEEcccccccCCCCCCHHHHHHHHHHH
Q 026522          112 DKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV-S-SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFEL  189 (237)
Q Consensus       112 ~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i-~-~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~I  189 (237)
                      +++..+. .++...+           -+..|.+.+|.++ ++.+ + ..+++.         =+|..++   +.+-...|
T Consensus       107 ~~Li~~a-~~~~vTF-----------HRAfD~~~d~~~a-l~~l~~lG~~rIL---------TSGg~~~---a~~g~~~L  161 (248)
T PRK11572        107 RKIMAAA-GPLAVTF-----------HRAFDMCANPLNA-LKQLADLGVARIL---------TSGQQQD---AEQGLSLI  161 (248)
T ss_pred             HHHHHHh-cCCceEE-----------echhhccCCHHHH-HHHHHHcCCCEEE---------CCCCCCC---HHHHHHHH
Confidence            6665554 4665544           1333444334332 2211 1 123321         1355555   44455666


Q ss_pred             HHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522          190 RKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS  226 (237)
Q Consensus       190 R~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~  226 (237)
                      ++.....     +..+ |+-|| +|+++|+.++...|
T Consensus       162 ~~lv~~a-----~~~~-Im~Gg-GV~~~Nv~~l~~tG  191 (248)
T PRK11572        162 MELIAAS-----DGPI-IMAGA-GVRLSNLHKFLDAG  191 (248)
T ss_pred             HHHHHhc-----CCCE-EEeCC-CCCHHHHHHHHHcC
Confidence            6655432     1223 99999 99999999986544

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=89.72  E-value=0.39  Score=43.10  Aligned_cols=43  Identities=16%  Similarity=0.238  Sum_probs=34.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522          173 TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF  230 (237)
Q Consensus       173 tG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~  230 (237)
                      ||.++++++++.+    ++.          ..+|+|-|- +|+++|+.++|.+.=||-
T Consensus       188 TG~~~d~~el~~a----~~~----------~~~pvlvGS-Gv~~eN~~~~l~~adG~I  230 (263)
T COG0434         188 TGSPPDLEELKLA----KEA----------VDTPVLVGS-GVNPENIEELLKIADGVI  230 (263)
T ss_pred             CCCCCCHHHHHHH----Hhc----------cCCCEEEec-CCCHHHHHHHHHHcCceE
Confidence            6778888887543    321          228999999 999999999999998885

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=89.50  E-value=6.2  Score=37.71  Aligned_cols=115  Identities=14%  Similarity=0.099  Sum_probs=68.9

Q ss_pred             cccCcCcccccCHHHHHhCCCCeEEecccccccccccCH-HHHHHHHHHHHHCCCeEEEEe-C-CcHHHHhcCCcHHHHH
Q 026522           69 VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELN-EFVGDKVAYALSQGLKVIACV-G-ETLEQREAGSTMDVVA  145 (237)
Q Consensus        69 ~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd-~~V~~Kv~~al~~gl~pIvCi-G-Et~e~r~~g~~~~vl~  145 (237)
                      ..+.|.|.    .+++.++|++++.+        +.|.. +.+.+=++.+.+.|+.+++|. + ++..+           
T Consensus       235 ~~Di~~~v----v~~~a~aGAD~vTV--------H~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e-----------  291 (391)
T PRK13307        235 TLDTGNLE----ARMAADATADAVVI--------SGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVK-----------  291 (391)
T ss_pred             ccChhhHH----HHHHHhcCCCEEEE--------eccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHH-----------
Confidence            34666665    88999999999977        33333 468888899999999999973 2 23222           


Q ss_pred             HHHHHHHhccCCCCCeEEE--EcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH
Q 026522          146 AQTKAIADRVSSWSNIVLA--YEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL  223 (237)
Q Consensus       146 ~Ql~~~l~~i~~~~~iiIA--YEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~  223 (237)
                       .++.++..+   +-+.+-  ++|-     +.....+    -++.+|+.         ..+++|...| +++++|+.+++
T Consensus       292 -~i~~l~~~v---D~Vllht~vdp~-----~~~~~~~----kI~~ikk~---------~~~~~I~VdG-GI~~eti~~l~  348 (391)
T PRK13307        292 -LLESLKVKP---DVVELHRGIDEE-----GTEHAWG----NIKEIKKA---------GGKILVAVAG-GVRVENVEEAL  348 (391)
T ss_pred             -HHHHhhCCC---CEEEEccccCCC-----cccchHH----HHHHHHHh---------CCCCcEEEEC-CcCHHHHHHHH
Confidence             122222221   112222  4442     1111112    22334432         2247899999 99999999988


Q ss_pred             Hccccc
Q 026522          224 LLSFGC  229 (237)
Q Consensus       224 ~~~~~~  229 (237)
                      ..|.-+
T Consensus       349 ~aGADi  354 (391)
T PRK13307        349 KAGADI  354 (391)
T ss_pred             HcCCCE
Confidence            766543

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=88.83  E-value=5  Score=38.26  Aligned_cols=114  Identities=13%  Similarity=0.110  Sum_probs=65.8

Q ss_pred             cccCHHHHHhCCCCeEEe-cccccccccccCHHHHHHHHHHHHHCCCeEEE-EeC-CcHHHHhcCCcHHHHHHHHHHHHh
Q 026522           77 GEISAEMLVNLEIPWVIL-GHSERRLILNELNEFVGDKVAYALSQGLKVIA-CVG-ETLEQREAGSTMDVVAAQTKAIAD  153 (237)
Q Consensus        77 GeiSa~mLkd~G~~~viI-GHSERR~~f~Etd~~V~~Kv~~al~~gl~pIv-CiG-Et~e~r~~g~~~~vl~~Ql~~~l~  153 (237)
                      |++..+++.++|++++.+ |=+        ++..+.+=++.+.+.|+.+++ |+. ++..++            ++.+.+
T Consensus        70 g~~~v~~a~~aGAdgV~v~g~~--------~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~------------~~~a~~  129 (430)
T PRK07028         70 GAIEVEMAAKAGADIVCILGLA--------DDSTIEDAVRAARKYGVRLMADLINVPDPVKR------------AVELEE  129 (430)
T ss_pred             hHHHHHHHHHcCCCEEEEecCC--------ChHHHHHHHHHHHHcCCEEEEEecCCCCHHHH------------HHHHHh
Confidence            566999999999999885 311        122344445677889999887 655 442221            222322


Q ss_pred             ccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccccc
Q 026522          154 RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGC  229 (237)
Q Consensus       154 ~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~  229 (237)
                          ..-.+|...|...   +.+..+..    ...+|+....       .++||+-.| +++++|+.+++.-|.-+
T Consensus       130 ----~GaD~I~~~pg~~---~~~~~~~~----~~~l~~l~~~-------~~iPI~a~G-GI~~~n~~~~l~aGAdg  186 (430)
T PRK07028        130 ----LGVDYINVHVGID---QQMLGKDP----LELLKEVSEE-------VSIPIAVAG-GLDAETAAKAVAAGADI  186 (430)
T ss_pred             ----cCCCEEEEEeccc---hhhcCCCh----HHHHHHHHhh-------CCCcEEEEC-CCCHHHHHHHHHcCCCE
Confidence                1122345556432   21211211    2344443221       138999999 99999999988776543

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=88.59  E-value=6.4  Score=33.06  Aligned_cols=113  Identities=17%  Similarity=0.066  Sum_probs=62.0

Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      ..+++.++|++++.+ |++-.     ..    ..++.....+..+-+-+. |.++             +.....    ..
T Consensus        73 ~~~~a~~~gad~vh~-~~~~~-----~~----~~~~~~~~~~~~~g~~~~-t~~e-------------~~~a~~----~g  124 (212)
T PRK00043         73 RVDLALAVGADGVHL-GQDDL-----PV----ADARALLGPDAIIGLSTH-TLEE-------------AAAALA----AG  124 (212)
T ss_pred             hHHHHHHcCCCEEec-CcccC-----CH----HHHHHHcCCCCEEEEeCC-CHHH-------------HHHHhH----cC
Confidence            468999999999877 44321     11    123444456666655443 3221             111111    12


Q ss_pred             CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522          160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF  230 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~  230 (237)
                      -.+|..-|+..-++.....+..--+..+.+++.+         +++||+--| +++++|+.+++..|+-.+
T Consensus       125 aD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~v~a~G-GI~~~~i~~~~~~Ga~gv  185 (212)
T PRK00043        125 ADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV---------GDIPIVAIG-GITPENAPEVLEAGADGV  185 (212)
T ss_pred             CCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc---------CCCCEEEEC-CcCHHHHHHHHHcCCCEE
Confidence            3355666777766544332211011122233221         137899999 999999999998876554

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=87.85  E-value=4.9  Score=35.90  Aligned_cols=145  Identities=16%  Similarity=0.188  Sum_probs=84.8

Q ss_pred             EEcCccccHHHHHHhcCCCcEEeeeccccccCcCc---ccccC-----HHHHHhCCCCeEEecccccccccccCHHHHHH
Q 026522           41 VVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAF---TGEIS-----AEMLVNLEIPWVILGHSERRLILNELNEFVGD  112 (237)
Q Consensus        41 ~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~---TGeiS-----a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~  112 (237)
                      .+-|++-.+..+.+..  ++++-.  +=-.-.|-|   ..|++     -.+.+++|++.|.+|-+--   -++-|...-+
T Consensus        35 G~TPSyG~~k~a~~~~--~ipv~~--MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~---dg~iD~~~le  107 (241)
T COG3142          35 GLTPSYGVIKEAVELS--KIPVYV--MIRPRGGDFVYSDDELEIMLEDIRLARELGVQGVVLGALTA---DGNIDMPRLE  107 (241)
T ss_pred             CCCCCHHHHHHHHhhc--CCceEE--EEecCCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecC---CCccCHHHHH
Confidence            4678888888877653  333221  000112222   23333     2456788999999998743   5667766666


Q ss_pred             HHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC-CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 026522          113 KVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS-SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK  191 (237)
Q Consensus       113 Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~-~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~  191 (237)
                      |+..+. .||...+           -+..|.+.+|..++-.-++ ...++.         =+|.++|+.+-   ...|++
T Consensus       108 ~Li~aA-~gL~vTF-----------HrAFD~~~d~~~ale~li~~Gv~RIL---------TsGg~~sa~eg---~~~l~~  163 (241)
T COG3142         108 KLIEAA-GGLGVTF-----------HRAFDECPDPLEALEQLIELGVERIL---------TSGGKASALEG---LDLLKR  163 (241)
T ss_pred             HHHHHc-cCCceee-----------ehhhhhcCCHHHHHHHHHHCCCcEEe---------cCCCcCchhhh---HHHHHH
Confidence            666554 3665443           1445556555544332222 133432         14555555543   456666


Q ss_pred             HHHhcCCccccCcccEEEcCCCCChhhHHHH
Q 026522          192 WLLANTSPEIAAATRIIYGGISINVSHVLVH  222 (237)
Q Consensus       192 ~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~  222 (237)
                      ++..     .+..+.|+-|| +|+++|++++
T Consensus       164 li~~-----a~gri~Im~Ga-GV~~~N~~~l  188 (241)
T COG3142         164 LIEQ-----AKGRIIIMAGA-GVRAENIAEL  188 (241)
T ss_pred             HHHH-----hcCCEEEEeCC-CCCHHHHHHH
Confidence            6643     25679999999 9999999998

>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene

Probab=87.48  E-value=16  Score=30.59  Aligned_cols=112  Identities=16%  Similarity=0.128  Sum_probs=71.7

Q ss_pred             CcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE---EEeCCcHHHHhcCCcHHHHHHHHHH
Q 026522           74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI---ACVGETLEQREAGSTMDVVAAQTKA  150 (237)
Q Consensus        74 A~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI---vCiGEt~e~r~~g~~~~vl~~Ql~~  150 (237)
                      .|.|.+....||+.|+++|||-=+|...+   .|.....-++.|.++||..=   +.-+.+       .    -.+|.+-
T Consensus         7 ~~q~~id~~~~k~~gi~fviiKateG~~y---~D~~~~~~~~~a~~aGl~~G~Yhy~~~~~-------~----a~~qA~~   72 (184)
T cd06525           7 NWQGNINFNAVKDSGVEVVYIKATEGTTF---VDSYFNENYNGAKAAGLKVGFYHFLVGTS-------N----PEEQAEN   72 (184)
T ss_pred             CCCCCCCHHHHHhCCCeEEEEEecCCCcc---cCHhHHHHHHHHHHCCCceEEEEEeeCCC-------C----HHHHHHH
Confidence            47889999999999999999999987655   47788999999999999642   111111       1    1345555


Q ss_pred             HHhccCC---CCCeEEEEcccccccCCCCCCHHHH-HHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522          151 IADRVSS---WSNIVLAYEPVWAIGTGKVATPAQA-QEVHFELRKWLLANTSPEIAAATRIIYGG  211 (237)
Q Consensus       151 ~l~~i~~---~~~iiIAYEPvWAIGtG~~as~e~i-~~~~~~IR~~l~~~~~~~~a~~i~ILYGG  211 (237)
                      .++.+..   .-++++-+|..    ++.  +.... ..+.++++ .+++.+|     ..++||-+
T Consensus        73 f~~~~~~~~~~~~~~lD~E~~----~~~--~~~~~~~~~~~f~~-~v~~~~G-----~~~~iY~~  125 (184)
T cd06525          73 FYNTIKGKKMDLKPALDVEVN----FGL--SKDELNDYVLRFIE-EFEKLSG-----LKVGIYTY  125 (184)
T ss_pred             HHHhccccCCCCCeEEEEecC----CCC--CHHHHHHHHHHHHH-HHHHHHC-----CCeEEEec
Confidence            5554432   23678889973    222  33443 33334443 3443333     25899998

Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.

>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans

Probab=87.20  E-value=17  Score=30.81  Aligned_cols=117  Identities=18%  Similarity=0.015  Sum_probs=70.6

Q ss_pred             cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE----EEeCCcHHHHhcCCcHHHHHHHHHH
Q 026522           75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI----ACVGETLEQREAGSTMDVVAAQTKA  150 (237)
Q Consensus        75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI----vCiGEt~e~r~~g~~~~vl~~Ql~~  150 (237)
                      |.|.|....+|..|+++|||==+|--.+   .|.....-++.|.++||.+=    .|.+.+...           +|.+-
T Consensus         9 ~qg~idw~~vk~~g~~fviiKateG~~~---~D~~~~~n~~~A~~aGl~~G~Yhf~~~~~~~a~-----------~qA~~   74 (199)
T cd06412           9 HQGSVDWSGAAANGARFAYVKATEGTSY---TNPRFSSQYNGAYNAGLIRGAYHFALPDQSSGA-----------AQADY   74 (199)
T ss_pred             CCCCCCHHHHHhCCCeEEEEEEecCCCc---cChhHHHHHHHHHHcCCceEEEEEeecCCCCHH-----------HHHHH
Confidence            7789999999999999999988886544   57778888999999999543    444432111           23433


Q ss_pred             HHhccCC------CCCeEEEEcccccccCCCCCCHHHHHH-HHHHHHHHHHhcCCccccCcccEEEcC
Q 026522          151 IADRVSS------WSNIVLAYEPVWAIGTGKVATPAQAQE-VHFELRKWLLANTSPEIAAATRIIYGG  211 (237)
Q Consensus       151 ~l~~i~~------~~~iiIAYEPvWAIGtG~~as~e~i~~-~~~~IR~~l~~~~~~~~a~~i~ILYGG  211 (237)
                      .++.+..      .-++++-+|-----++....+..++.. +.+|+++ +.+..|     ..|+||-+
T Consensus        75 fi~~~~~~~~~~~~lp~~lD~E~~~~~~~~~~~~~~~~~~~~~~f~~~-v~~~~G-----~~~~iY~~  136 (199)
T cd06412          75 FLDHGGGWSPDGRTLPGVLDLEYNPYGATCYGLSPAQMVSWIKDFSDT-YKARTG-----RDPVIYTT  136 (199)
T ss_pred             HHHHcccccCCCCCCCeEEEEecCCCCCccCCCCHHHHHHHHHHHHHH-HHHHHC-----CCcEEEec
Confidence            4433311      224678888632211112234555433 3344433 333333     35899998

CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=86.88  E-value=9.3  Score=33.45  Aligned_cols=130  Identities=17%  Similarity=0.149  Sum_probs=79.4

Q ss_pred             CcEEeeeccccccCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcC
Q 026522           59 GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAG  138 (237)
Q Consensus        59 ~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g  138 (237)
                      ++.+   |+|..   ..|.+--.+.+.++|++++.+ |.|-      ++.++.+-++.+.+.|+.+-+.+.=..      
T Consensus        65 ~~~l---DvHLm---~~~p~~~i~~~~~~Gad~itv-H~ea------~~~~~~~~l~~ik~~G~~~gval~p~t------  125 (228)
T PTZ00170         65 NTFL---DCHLM---VSNPEKWVDDFAKAGASQFTF-HIEA------TEDDPKAVARKIREAGMKVGVAIKPKT------  125 (228)
T ss_pred             CCCE---EEEEC---CCCHHHHHHHHHHcCCCEEEE-eccC------CchHHHHHHHHHHHCCCeEEEEECCCC------
Confidence            4555   88877   345556669999999999988 5552      223366666788889988777665211      


Q ss_pred             CcHHHHHHHHHHHH--hccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCCh
Q 026522          139 STMDVVAAQTKAIA--DRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINV  216 (237)
Q Consensus       139 ~~~~vl~~Ql~~~l--~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~  216 (237)
                       .    .++++..+  ..++.  =++.+.||-.+   |....++-..++ +.+|+.    ++     .+.|.--| ++++
T Consensus       126 -~----~e~l~~~l~~~~vD~--Vl~m~v~pG~~---gq~~~~~~~~ki-~~~~~~----~~-----~~~I~VdG-GI~~  184 (228)
T PTZ00170        126 -P----VEVLFPLIDTDLVDM--VLVMTVEPGFG---GQSFMHDMMPKV-RELRKR----YP-----HLNIQVDG-GINL  184 (228)
T ss_pred             -C----HHHHHHHHccchhhh--HHhhhcccCCC---CcEecHHHHHHH-HHHHHh----cc-----cCeEEECC-CCCH
Confidence             1    12333333  21111  12467888553   566666555543 233442    21     25688888 8999


Q ss_pred             hhHHHHHHcccc
Q 026522          217 SHVLVHLLLSFG  228 (237)
Q Consensus       217 ~Na~~~~~~~~~  228 (237)
                      +|+.++..-|.-
T Consensus       185 ~ti~~~~~aGad  196 (228)
T PTZ00170        185 ETIDIAADAGAN  196 (228)
T ss_pred             HHHHHHHHcCCC
Confidence            999998776643

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=86.50  E-value=13  Score=33.29  Aligned_cols=136  Identities=10%  Similarity=0.051  Sum_probs=78.5

Q ss_pred             cccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE
Q 026522           46 FVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI  125 (237)
Q Consensus        46 ~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI  125 (237)
                      +-+|..+.+..  ++.|-..|.       .|=+.-....+++|++.|++.-+-++      ++.+..=++.|.+.|+.++
T Consensus       100 ~~~l~~v~~~v--~iPvl~kdf-------i~~~~qi~~a~~~GAD~VlLi~~~l~------~~~l~~li~~a~~lGl~~l  164 (260)
T PRK00278        100 LEYLRAARAAV--SLPVLRKDF-------IIDPYQIYEARAAGADAILLIVAALD------DEQLKELLDYAHSLGLDVL  164 (260)
T ss_pred             HHHHHHHHHhc--CCCEEeeee-------cCCHHHHHHHHHcCCCEEEEEeccCC------HHHHHHHHHHHHHcCCeEE
Confidence            44455555543  444444552       22223477889999999999988753      3566667799999999999


Q ss_pred             EEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcc
Q 026522          126 ACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAAT  205 (237)
Q Consensus       126 vCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i  205 (237)
                      +|+-...|              ++.+++    ....+|.|=| +-..|-   +++ .+.+.+.++.     .    ....
T Consensus       165 vevh~~~E--------------~~~A~~----~gadiIgin~-rdl~~~---~~d-~~~~~~l~~~-----~----p~~~  212 (260)
T PRK00278        165 VEVHDEEE--------------LERALK----LGAPLIGINN-RNLKTF---EVD-LETTERLAPL-----I----PSDR  212 (260)
T ss_pred             EEeCCHHH--------------HHHHHH----cCCCEEEECC-CCcccc---cCC-HHHHHHHHHh-----C----CCCC
Confidence            99976532              112222    2334666632 222221   112 2222222221     1    1124


Q ss_pred             cEEEcCCCC-ChhhHHHHHHccccc
Q 026522          206 RIIYGGISI-NVSHVLVHLLLSFGC  229 (237)
Q Consensus       206 ~ILYGG~SV-~~~Na~~~~~~~~~~  229 (237)
                      +++-.| ++ +|+|+..++..|+-.
T Consensus       213 ~vIaeg-GI~t~ed~~~~~~~Gad~  236 (260)
T PRK00278        213 LVVSES-GIFTPEDLKRLAKAGADA  236 (260)
T ss_pred             EEEEEe-CCCCHHHHHHHHHcCCCE
Confidence            666655 55 799999998887543

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=86.21  E-value=4.3  Score=35.33  Aligned_cols=144  Identities=16%  Similarity=0.272  Sum_probs=68.7

Q ss_pred             EEcCccccHHHHHHhcCCCcEEeeeccccccCcC---cccc------cCHHHHHhCCCCeEEecccccccccccCHHHHH
Q 026522           41 VVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGA---FTGE------ISAEMLVNLEIPWVILGHSERRLILNELNEFVG  111 (237)
Q Consensus        41 ~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA---~TGe------iSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~  111 (237)
                      .+-||+-.+..+.+..  ++++   +|-..+.|.   ||-+      -...+++++|++.+.+|=-.+   =++-|....
T Consensus        34 GlTPS~g~i~~~~~~~--~ipv---~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~---dg~iD~~~~  105 (201)
T PF03932_consen   34 GLTPSLGLIRQAREAV--DIPV---HVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTE---DGEIDEEAL  105 (201)
T ss_dssp             -B---HHHHHHHHHHT--TSEE---EEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BET---TSSB-HHHH
T ss_pred             CcCcCHHHHHHHHhhc--CCce---EEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECC---CCCcCHHHH
Confidence            4567777777766543  3322   222223322   3332      245678899999999997654   345777777


Q ss_pred             HHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc-C-CCCCeEEEEcccccccCCCCCCH-HHHHHHHHH
Q 026522          112 DKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV-S-SWSNIVLAYEPVWAIGTGKVATP-AQAQEVHFE  188 (237)
Q Consensus       112 ~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i-~-~~~~iiIAYEPvWAIGtG~~as~-e~i~~~~~~  188 (237)
                      +++..+.. |+...+  =         +..|.+.+|.++ ++.+ . ..+++.=         +|...+. +-+    ..
T Consensus       106 ~~Li~~a~-~~~~tF--H---------RAfD~~~d~~~a-l~~L~~lG~~rVLT---------SGg~~~a~~g~----~~  159 (201)
T PF03932_consen  106 EELIEAAG-GMPVTF--H---------RAFDEVPDPEEA-LEQLIELGFDRVLT---------SGGAPTALEGI----EN  159 (201)
T ss_dssp             HHHHHHHT-TSEEEE------------GGGGGSSTHHHH-HHHHHHHT-SEEEE---------STTSSSTTTCH----HH
T ss_pred             HHHHHhcC-CCeEEE--e---------CcHHHhCCHHHH-HHHHHhcCCCEEEC---------CCCCCCHHHHH----HH
Confidence            77777754 777665  1         122222222221 1111 0 1223211         2333322 222    23


Q ss_pred             HHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          189 LRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       189 IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      +++.+..     .+..+.|+-|| +|+++|+.++..
T Consensus       160 L~~lv~~-----a~~~i~Im~Gg-Gv~~~nv~~l~~  189 (201)
T PF03932_consen  160 LKELVEQ-----AKGRIEIMPGG-GVRAENVPELVE  189 (201)
T ss_dssp             HHHHHHH-----HTTSSEEEEES-S--TTTHHHHHH
T ss_pred             HHHHHHH-----cCCCcEEEecC-CCCHHHHHHHHH
Confidence            3443322     13468999999 999999999876

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain

Probab=85.63  E-value=21  Score=30.11  Aligned_cols=115  Identities=14%  Similarity=0.053  Sum_probs=70.0

Q ss_pred             cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeE-E---EEeCCcHHHHhcCCcHHHHHHHHHH
Q 026522           75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV-I---ACVGETLEQREAGSTMDVVAAQTKA  150 (237)
Q Consensus        75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~p-I---vCiGEt~e~r~~g~~~~vl~~Ql~~  150 (237)
                      |.|.|....||+.|+++|+|==+|...+   .|+.-..-++.|.++||.. +   .|-..+ .           .+|.+-
T Consensus        11 ~q~~id~~~vk~~gi~fviiKateG~~~---~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~~~-~-----------~~qA~~   75 (191)
T cd06413          11 HQGDIDWARVRAQGVSFAYIKATEGGDH---VDKRFAENWRGARAAGLPRGAYHFFTFCRS-G-----------AEQAAN   75 (191)
T ss_pred             CCCCcCHHHHHhCCCcEEEEEEcCCCCc---cCHHHHHHHHHHHHcCCceEEEEEEecCCC-H-----------HHHHHH
Confidence            7789999999999999999988887654   6677778889999999863 1   221111 1           134444


Q ss_pred             HHhccCC---CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522          151 IADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG  211 (237)
Q Consensus       151 ~l~~i~~---~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG  211 (237)
                      .++.+..   .-++++-+|..  -......+..++.+......+.+.+..|     ..++||.+
T Consensus        76 f~~~~~~~~~~~~~~lD~E~~--~~~~~~~~~~~~~~~~~~f~~~v~~~~G-----~~~~iY~~  132 (191)
T cd06413          76 FIRNVPKDPGALPPVVDVEWN--GNSATCPSAEEVLAELQVFLDALEAHYG-----KRPIIYTT  132 (191)
T ss_pred             HHHhcCCCCCcCCeEEEEEec--CCCCCCCCHHHHHHHHHHHHHHHHHHHC-----CCeEEEeC
Confidence            4444432   23567888852  1111114555544333333344443333     24799998

Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=84.25  E-value=7.3  Score=33.06  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=19.7

Q ss_pred             cccEEEcCCCCChhhHHHHHHcc
Q 026522          204 ATRIIYGGISINVSHVLVHLLLS  226 (237)
Q Consensus       204 ~i~ILYGG~SV~~~Na~~~~~~~  226 (237)
                      .+|++-.| +++|+|+.+++..+
T Consensus       152 ~~PvilaG-GI~~~Nv~~~i~~~  173 (203)
T cd00405         152 RKPVILAG-GLTPDNVAEAIRLV  173 (203)
T ss_pred             CCCEEEEC-CCChHHHHHHHHhc
Confidence            37999999 99999999998876

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>TIGR00433 bioB biotin synthetase

Probab=80.90  E-value=36  Score=30.20  Aligned_cols=100  Identities=21%  Similarity=0.154  Sum_probs=54.4

Q ss_pred             HHHHHhCCCCeEEec---cccc-cccc-ccCHHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHHHHHHHH
Q 026522           81 AEMLVNLEIPWVILG---HSER-RLIL-NELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVAAQTKAI  151 (237)
Q Consensus        81 a~mLkd~G~~~viIG---HSER-R~~f-~Etd~~V~~Kv~~al~~gl~p----IvCiGEt~e~r~~g~~~~vl~~Ql~~~  151 (237)
                      .+.||++|++.+.+|   +.|- ++.. +.+-+..-+-++.+.++|+.+    |+-.||+.++..         +-+. .
T Consensus       126 l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~---------~~~~-~  195 (296)
T TIGR00433       126 AKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRI---------GLAL-A  195 (296)
T ss_pred             HHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHH---------HHHH-H
Confidence            556778899998775   2221 1122 234455556678889999985    555678765542         1111 1


Q ss_pred             HhccCCCCCe-EEEEcccccccCC----CCCCHHHHHHHHHHHHHHH
Q 026522          152 ADRVSSWSNI-VLAYEPVWAIGTG----KVATPAQAQEVHFELRKWL  193 (237)
Q Consensus       152 l~~i~~~~~i-iIAYEPvWAIGtG----~~as~e~i~~~~~~IR~~l  193 (237)
                      +..+. ...+ +-.+=|.  =||.    .++++++.-++++..|..+
T Consensus       196 l~~l~-~~~i~l~~l~p~--~gT~l~~~~~~s~~~~~~~ia~~r~~l  239 (296)
T TIGR00433       196 LANLP-PESVPINFLVKI--KGTPLADNKELSADDALKTIALARIIM  239 (296)
T ss_pred             HHhCC-CCEEEeeeeEEc--CCCccCCCCCCCHHHHHHHHHHHHHHC
Confidence            11111 1111 1112232  1442    2457778888888888765

Catalyzes the last step of the biotin biosynthesis pathway.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
1r2r_A	248	Crystal Structure Of Rabbit Muscle Triosephosphate		2e-58
1hti_A	248	Crystal Structure Of Recombinant Human Triosephosph		5e-58
1sw3_A	248	Triosephosphate Isomerase From Gallus Gallus, Loop		5e-58
1wyi_A	250	Human Triosephosphate Isomerase Of New Crystal Form		5e-58
2vom_A	250	Structural Basis Of Human Triosephosphate Isomerase		1e-57
1tph_1	247	1.8 Angstroms Crystal Structure Of Wild Type Chicke		2e-57
1tpb_1	247	Offset Of A Catalytic Lesion By A Bound Water Solub		5e-57
1spq_A	247	Understanding Protein Lids: Structural Analysis Of		6e-57
2i9e_A	259	Structure Of Triosephosphate Isomerase Of Tenebrio		8e-57
1tpw_A	247	Triosephosphate Isomerase Drinks Water To Keep Heal		1e-56
1tpc_1	247	Offset Of A Catalytic Lesion By A Bound Water Solub		2e-56
1tpu_A	247	S96p Change Is A Second-Site Suppressor For H95n Sl		2e-56
1sw7_A	248	Triosephosphate Isomerase From Gallus Gallus, Loop		2e-56
1sq7_A	247	Understanding Protein Lids: Structural Analysis Of		5e-56
1sw0_A	248	Triosephosphate Isomerase From Gallus Gallus, Loop		6e-56
1su5_A	247	Understanding Protein Lids: Structural Analysis Of		6e-56
1ssd_A	247	Understanding Protein Lids: Structural Analysis Of		7e-56
1tpv_A	247	S96p Change Is A Second-Site Suppressor For H95n Sl		9e-56
1tim_A	247	Structure Of Triose Phosphate Isomerase From Chicke		1e-55
1mo0_A	275	Structural Genomics Of Caenorhabditis Elegans: Trio		2e-53
1qds_A	251	Superstable E65q Mutant Of Leishmania Mexicana Trio		4e-51
3th6_A	249	Crystal Structure Of Triosephosphate Isomerase From		1e-50
1amk_A	251	Leishmania Mexicana Triose Phosphate Isomerase Leng		1e-50
1m6j_A	261	Crystal Structure Of Triosephosphate Isomerase From		8e-50
1ypi_A	247	Structure Of Yeast Triosephosphate Isomerase At 1.9		2e-48
4ff7_A	248	Structure Of C126s Mutant Of Saccharomyces Cerevisi		4e-48
3ypi_A	247	Electrophilic Catalysis In Triosephosphase Isomeras		2e-47
2oma_A	250	Crystallographic Analysis Of A Chemically Modified		5e-47
1ci1_A	251	Crystal Structure Of Triosephosphate Isomerase From		6e-47
1tcd_A	249	Trypanosoma Cruzi Triosephosphate Isomerase Length		6e-47
1i45_A	248	Yeast Triosephosphate Isomerase (Mutant) Length = 2		1e-46
3krs_A	271	Structure Of Triosephosphate Isomerase From Cryptos		2e-46
1nf0_A	247	Triosephosphate Isomerase In Complex With Dhap Leng		5e-46
2vfd_A	248	Crystal Structure Of The F96s Mutant Of Plasmodium		7e-44
3q37_A	251	Identification Of Amino Acids That Account For Long		1e-43
2vff_A	248	Crystal Structure Of The F96h Mutant Of Plasmodium		2e-43
1ydv_A	248	Triosephosphate Isomerase (Tim) Length = 248		4e-43
3psv_A	248	Structure Of E97d Mutant Of Tim From Plasmodium Fal		7e-43
3psw_A	248	Structure Of E97q Mutant Of Tim From Plasmodium Fal		9e-43
2vfh_A	248	Crystal Structure Of The F96w Mutant Of Plasmodium		1e-42
3qsr_A	255	Crystal Structure Of Trichomonas Vaginalis Trioseph		1e-42
3qst_A	255	Crystal Structure Of Trichomonas Vaginalis Trioseph		2e-42
1vga_A	248	Structures Of Unligated And Inhibitor Complexes Of		2e-42
3pwa_A	248	Structure Of C126a Mutant Of Plasmodium Falciparum		6e-42
3pvf_A	248	Structure Of C126s Mutant Of Plasmodium Falciparum		6e-42
2yc6_A	257	Crystal Structure Of A Triple Mutant (A198v, C202a		4e-41
2dp3_A	257	Crystal Structure Of A Double Mutant (C202aA198V) O		4e-41
2yc8_A	255	Crystal Structure Of A Double Mutant (C202a And C22		7e-41
2yc7_A	257	Crystal Structure Of A Mutant (C202a) Of Triosephos		7e-41
2v5b_A	244	The Monomerization Of Triosephosphate Isomerase Fro		2e-40
3pf3_A	257	Crystal Structure Of A Mutant (C202a) Of Triosephos		1e-39
4tim_A	250	Crystallographic And Molecular Modeling Studies On		7e-39
3tim_A	250	The Crystal Structure Of The "open" And The "closed		3e-38
2v0t_A	250	The A178l Mutation In The C-Terminal Hinge Of The F		3e-38
1kv5_A	250	Structure Of Trypanosoma Brucei Brucei Tim With The		4e-38
2j24_A	250	The Functional Role Of The Conserved Active Site Pr		6e-38
1b9b_A	255	Triosephosphate Isomerase Of Thermotoga Maritima Le		4e-37
2y6z_A	256	Crystallographic Structure Of Gm23 An Example Of Ca		6e-34
2y70_A	245	Crystallographic Structure Of Gm23, Mutant G89d, An		1e-33
2btm_A	252	Does The His12-Lys13 Pair Play A Role In The Adapta		1e-32
2wsq_A	242	Monotim Mutant Rmm0-1, Dimeric Form. Length = 242		1e-32
1ml1_A	243	Protein Engineering With Monomeric Triosephosphate		1e-32
1tti_A	243	Three New Crystal Structures Of Point Mutation Vari		1e-32
1mss_A	243	Large Scale Structural Rearrangements Of The Front		1e-32
2wsr_A	242	Monotim Mutant Rmm0-1, Monomeric Form Length = 242		2e-32
1tri_A	243	The Crystal Structure Of An Engineered Monomeric Tr		2e-32
3uwu_A	261	Crystal Structure Of Staphylococcus Aureus Trioseph		3e-32
3m9y_A	254	Crystal Structure Of Triosephosphate Isomerase From		3e-32
1tmh_A	254	Modular Mutagenesis Of A Tim-barrel Enzyme: The Cry		2e-31
4iot_A	255	High-resolution Structure Of Triosephosphate Isomer		2e-31
1tre_A	255	The Structure Of Triosephosphate Isomerase From Esc		2e-31
1btm_A	252	Triosephosphate Isomerase (Tim) Complexed With 2- P		3e-31
1dkw_A	238	Crystal Structure Of Triose-Phosphate Isomerase Wit		9e-31
2vek_A	238	Structure-Based Enzyme Engineering Efforts With An		5e-30
2vei_A	238	Structure-Based Enzyme Engineering Efforts With An		6e-30
2v2d_A	242	The A178l Mutation In The C-Terminal Hinge Of The F		2e-29
1aw1_A	256	Triosephosphate Isomerase Of Vibrio Marinus Complex		4e-29
1yya_A	250	Crystal Structure Of Tt0473, Putative Triosephospha		5e-28
4g1k_A	272	Crystal Structure Of Triosephosphate Isomerase From		3e-27
3kxq_A	275	Crystal Structure Of Triosephosphate Isomerase From		8e-27
3ta6_A	267	Structure Of Mycobacterium Tuberculosis Triosephosp		5e-26
3gvg_A	283	Crystal Structure Of Triosephosphate Isomerase From		3e-25
2jgq_A	233	Kinetics And Structural Properties Of Triosephospha		1e-21
3s6d_A	310	Crystal Structure Of A Putative Triosephosphate Iso		2e-14
1w0m_A	226	Triosephosphate Isomerase From Thermoproteus Tenax		2e-04

>pdb|1R2R|A Chain A, Crystal Structure Of Rabbit Muscle Triosephosphate Isomerase Length = 248

Iteration: 1
 Score =  222 bits (565), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 138/209 (66%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + ++++ LN  +                ++   +  L P   V
Sbjct: 4   RKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAV 61
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+ALS+GL
Sbjct: 62  AAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGL 121
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct: 122 GVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 181
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL +N S  +A +TRIIYGG
Sbjct: 182 QEVHEKLRGWLKSNVSDAVAQSTRIIYGG 210

>pdb|1HTI|A Chain A, Crystal Structure Of Recombinant Human Triosephosphate Isomerase At 2.8 Angstroms Resolution. Triosephosphate Isomerase Related Human Genetic Disorders And Comparison With The Trypanosomal Enzyme Length = 248

Iteration: 1
 Score =  220 bits (561), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 137/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                ++   +  L P   V
Sbjct: 4   RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAV 61
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+AL++GL
Sbjct: 62  AAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGL 121
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct: 122 GVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 181
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL +N S  +A +TRIIYGG
Sbjct: 182 QEVHEKLRGWLKSNVSDAVAQSTRIIYGG 210

>pdb|1SW3|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6 Mutant T175v Length = 248

Iteration: 1
 Score =  220 bits (561), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 112/209 (53%), Positives = 139/209 (66%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct: 4   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 61
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILGHSERR +  E +E +G KVA+AL++GL
Sbjct: 62  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGL 121
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGKVATP QA
Sbjct: 122 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKVATPQQA 181
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL ++ S  +A +TRIIYGG
Sbjct: 182 QEVHEKLRGWLKSHVSDAVAQSTRIIYGG 210

>pdb|1WYI|A Chain A, Human Triosephosphate Isomerase Of New Crystal Form Length = 250

Iteration: 1
 Score =  220 bits (561), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 137/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                ++   +  L P   V
Sbjct: 6   RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAV 63
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+AL++GL
Sbjct: 64  AAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGL 123
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct: 124 GVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 183
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL +N S  +A +TRIIYGG
Sbjct: 184 QEVHEKLRGWLKSNVSDAVAQSTRIIYGG 212

>pdb|2VOM|A Chain A, Structural Basis Of Human Triosephosphate Isomerase Deficiency. Mutation E104d And Correlation To Solvent Perturbation. Length = 250

Iteration: 1
 Score =  219 bits (558), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/209 (52%), Positives = 137/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                ++   +  L P   V
Sbjct: 6   RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAV 63
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  + +E +G KVA+AL++GL
Sbjct: 64  AAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGDSDELIGQKVAHALAEGL 123
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct: 124 GVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 183
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL +N S  +A +TRIIYGG
Sbjct: 184 QEVHEKLRGWLKSNVSDAVAQSTRIIYGG 212

>pdb|1TPH|1 Chain 1, 1.8 Angstroms Crystal Structure Of Wild Type Chicken Triosephosphate Isomerase-Phosphoglycolohydroxamate Complex Length = 247

Iteration: 1
 Score =  218 bits (555), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 137/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct: 3   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 60
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILGHSERR +  E +E +G KVA+AL++GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGL 120
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct: 121 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 180
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL  + S  +A +TRIIYGG
Sbjct: 181 QEVHEKLRGWLKTHVSDAVAQSTRIIYGG 209

>pdb|1TPB|1 Chain 1, Offset Of A Catalytic Lesion By A Bound Water Soluble Length = 247

Iteration: 1
 Score =  217 bits (552), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 137/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct: 3   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 60
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILGHSERR +  E +E +G KVA+AL++GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGL 120
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAY+PVWAIGTGK ATP QA
Sbjct: 121 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYDPVWAIGTGKTATPQQA 180
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL  + S  +A +TRIIYGG
Sbjct: 181 QEVHEKLRGWLKTHVSDAVAQSTRIIYGG 209

>pdb|1SPQ|A Chain A, Understanding Protein Lids: Structural Analysis Of Active Hinge Mutants In Triosephosphate Isomerase Length = 247

Iteration: 1
 Score =  216 bits (551), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 137/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct: 3   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 60
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILGHSERR +  E +E +G KVA+AL++GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGL 120
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK  TP QA
Sbjct: 121 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTKTPQQA 180
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL ++ S  +A +TRIIYGG
Sbjct: 181 QEVHEKLRGWLKSHVSDAVAQSTRIIYGG 209

>pdb|2I9E|A Chain A, Structure Of Triosephosphate Isomerase Of Tenebrio Molitor Length = 259

Iteration: 1
 Score =  216 bits (550), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 109/211 (51%), Positives = 139/211 (65%), Gaps = 2/211 (0%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           M RKF VGGNWK NG  +++ +I+  L  G                 +L LV++ +    
Sbjct: 1   MARKFVVGGNWKMNGDKKQINEIIGFLKSGPLNQDTEVVVGVPAI--YLELVRTCVPASI 58
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            VAAQNC+    GAFTGEIS  M+ ++   WVILGHSERR I  E +E + +KV +AL  
Sbjct: 59  GVAAQNCYKVPKGAFTGEISPAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALES 118
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIAC+GETLE+REAG T +VV  QTKAIA +V+ WSN+V+AYEPVWAIGTGK ATP 
Sbjct: 119 GLKVIACIGETLEEREAGKTEEVVFRQTKAIAAKVNDWSNVVIAYEPVWAIGTGKTATPQ 178
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQ+VH  LR+W+  N   ++  + RI YGG
Sbjct: 179 QAQDVHKALRQWICENIDAKVGNSIRIQYGG 209

>pdb|1TPW|A Chain A, Triosephosphate Isomerase Drinks Water To Keep Healthy Length = 247

Iteration: 1
 Score =  216 bits (549), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 136/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct: 3   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 60
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILGH ERR +  E +E +G KVA+AL++GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHPERRHVFGESDELIGQKVAHALAEGL 120
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct: 121 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 180
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL  + S  +A +TRIIYGG
Sbjct: 181 QEVHEKLRGWLKTHVSDAVAQSTRIIYGG 209

>pdb|1TPC|1 Chain 1, Offset Of A Catalytic Lesion By A Bound Water Soluble Length = 247

Iteration: 1
 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/209 (52%), Positives = 136/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct: 3   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 60
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILGH ERR +  E +E +G KVA+AL++GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHPERRHVFGESDELIGQKVAHALAEGL 120
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAY+PVWAIGTGK ATP QA
Sbjct: 121 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYDPVWAIGTGKTATPQQA 180
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL  + S  +A +TRIIYGG
Sbjct: 181 QEVHEKLRGWLKTHVSDAVAQSTRIIYGG 209

>pdb|1TPU|A Chain A, S96p Change Is A Second-Site Suppressor For H95n Sluggish Mutant Triosephosphate Isomerase Length = 247

Iteration: 1
 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 137/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct: 3   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 60
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILG+SERR +  E +E +G KVA+AL++GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGNSERRHVFGESDELIGQKVAHALAEGL 120
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct: 121 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 180
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL  + S  +A +TRIIYGG
Sbjct: 181 QEVHEKLRGWLKTHVSDAVAQSTRIIYGG 209

>pdb|1SW7|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6 Mutant K174n, T175s, A176s Length = 248

Iteration: 1
 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/209 (52%), Positives = 137/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct: 4   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 61
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILGHSERR +  E +E +G KVA+AL++GL
Sbjct: 62  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGL 121
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTG  +TP QA
Sbjct: 122 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGNSSTPQQA 181
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL ++ S  +A +TRIIYGG
Sbjct: 182 QEVHEKLRGWLKSHVSDAVAQSTRIIYGG 210

>pdb|1SQ7|A Chain A, Understanding Protein Lids: Structural Analysis Of Active Hinge Mutants In Triosephosphate Isomerase Length = 247

Iteration: 1
 Score =  213 bits (543), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 137/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct: 3   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 60
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILGHSERR +  E +E +G KVA+AL++GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGL 120
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTG  ATP QA
Sbjct: 121 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGLWATPQQA 180
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL ++ S  +A +TRIIYGG
Sbjct: 181 QEVHEKLRGWLKSHVSDAVAQSTRIIYGG 209

>pdb|1SW0|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6 Hinge Mutant K174l, T175w Length = 248

Iteration: 1
 Score =  213 bits (543), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 137/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct: 4   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 61
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILGHSERR +  E +E +G KVA+AL++GL
Sbjct: 62  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGL 121
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTG  ATP QA
Sbjct: 122 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGLWATPQQA 181
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL ++ S  +A +TRIIYGG
Sbjct: 182 QEVHEKLRGWLKSHVSDAVAQSTRIIYGG 210

>pdb|1SU5|A Chain A, Understanding Protein Lids: Structural Analysis Of Active Hinge Mutants In Triosephosphate Isomerase Length = 247

Iteration: 1
 Score =  213 bits (543), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 109/209 (52%), Positives = 136/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct: 3   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 60
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILGHSERR +  E +E +G KVA+AL++GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGL 120
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTG   TP QA
Sbjct: 121 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGNPNTPQQA 180
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL ++ S  +A +TRIIYGG
Sbjct: 181 QEVHEKLRGWLKSHVSDAVAQSTRIIYGG 209

>pdb|1SSD|A Chain A, Understanding Protein Lids: Structural Analysis Of Active Hinge Mutants In Triosephosphate Isomerase Length = 247

Iteration: 1
 Score =  213 bits (542), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 109/209 (52%), Positives = 136/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct: 3   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 60
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILGHSERR +  E +E +G KVA+AL++GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGL 120
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTG   TP QA
Sbjct: 121 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGYSLTPQQA 180
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL ++ S  +A +TRIIYGG
Sbjct: 181 QEVHEKLRGWLKSHVSDAVAQSTRIIYGG 209

>pdb|1TPV|A Chain A, S96p Change Is A Second-Site Suppressor For H95n Sluggish Mutant Triosephosphate Isomerase Length = 247

Iteration: 1
 Score =  213 bits (541), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 109/209 (52%), Positives = 136/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  LN  +                +L   +  L     V
Sbjct: 3   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 60
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILG+ ERR +  E +E +G KVA+AL++GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGNPERRHVFGESDELIGQKVAHALAEGL 120
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct: 121 GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 180
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL  + S  +A +TRIIYGG
Sbjct: 181 QEVHEKLRGWLKTHVSDAVAQSTRIIYGG 209

>pdb|1TIM|A Chain A, Structure Of Triose Phosphate Isomerase From Chicken Muscle Length = 247

Iteration: 1
 Score =  213 bits (541), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/209 (51%), Positives = 136/209 (65%), Gaps = 2/209 (0%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + +++  L+  +                +L   +  L     V
Sbjct: 3   RKFFVGGNWKMNGKRKSLGELIHTLDGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGV 60
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ ++   WVILGHSERR +  E +E +G KVA+AL++GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGL 120
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  +TKAIAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct: 121 GVIACIGEKLDEREAGITEKVVFQETKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 180
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL  + S  +A  +RIIYGG
Sbjct: 181 QEVHEKLRGWLKTHVSDAVAVQSRIIYGG 209

>pdb|1MO0|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Triose Phosphate Isomerase Length = 275

Iteration: 1
 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 108/211 (51%), Positives = 132/211 (62%), Gaps = 2/211 (0%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           + RKFFVGGNWK NG    V  IV+ LN                   +L   KS L+ G 
Sbjct: 21  LTRKFFVGGNWKMNGDYASVDGIVTFLN--ASADNSSVDVVVAPPAPYLAYAKSKLKAGV 78
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            VAAQNC+    GAFTGEIS  M+ +L + WVILGHSERR +  E +  + +K  +AL  
Sbjct: 79  LVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEA 138
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           G+KV+ C+GE LE+REAG T DV   Q +AI D+  SW NIV+AYEPVWAIGTGK A+  
Sbjct: 139 GIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGE 198
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQEVH  +R +L    SP +A ATRIIYGG
Sbjct: 199 QAQEVHEWIRAFLKEKVSPAVADATRIIYGG 229

>pdb|1QDS|A Chain A, Superstable E65q Mutant Of Leishmania Mexicana Triosephosphate Isomerase (Tim) Length = 251

Iteration: 1
 Score =  197 bits (501), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 106/211 (50%), Positives = 137/211 (64%), Gaps = 7/211 (3%)
Query: 8   GGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQN 66
             NWKCNGT   ++K+V V NE                   + LV++ LR P + ++AQN
Sbjct: 10  AANWKCNGTTASIEKLVQVFNE--HTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAQN 67
Query: 67  CWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA 126
             + K GAFTGE+S  +L ++ + WVILGHSERR    E +E V  KV+ A  QG  VIA
Sbjct: 68  A-IAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIA 126
Query: 127 CVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQE 184
           C+GETL+QREA  T  VV +QT AIA +++  +W+ +VLAYEPVWAIGTGKVATP QAQE
Sbjct: 127 CIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQE 186
Query: 185 VHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           VH  LRKW+  N   ++AA  RI+YGG S+N
Sbjct: 187 VHLLLRKWVSENIGTDVAAKLRILYGG-SVN 216

>pdb|3TH6|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Rhipicephalus (Boophilus) Microplus. Length = 249

Iteration: 1
 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/213 (47%), Positives = 131/213 (61%), Gaps = 3/213 (1%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           R+F VGGNWK +G+   ++ I + L                    +L   +S L P   +
Sbjct: 4   RRFCVGGNWKMHGSKNSIRDICNTLKGASLDPNVEVIVACPAP--YLDYCRSLLPPSVAL 61
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+  + GAFTGEIS  M+ +    WVILGHSERR +  E +  +G+K+ +AL  GL
Sbjct: 62  AAQNCYKVEQGAFTGEISPGMIKDCGGQWVILGHSERRHVFKEDDVLIGEKIKHALESGL 121
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE LE REAG T +V   Q K IA  V  WS +V+AYEPVWAIGTGK ATP QA
Sbjct: 122 NVIACIGELLEDREAGRTEEVCFRQIKHIASNVKDWSKVVIAYEPVWAIGTGKTATPDQA 181
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QEVH ++R WL  N S ++A+  RI YGG S+N
Sbjct: 182 QEVHSKVRNWLSTNVSADVASKVRIQYGG-SVN 213

>pdb|1AMK|A Chain A, Leishmania Mexicana Triose Phosphate Isomerase Length = 251

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/211 (49%), Positives = 137/211 (64%), Gaps = 7/211 (3%)
Query: 8   GGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PGFHVAAQN 66
             NWKCNGT   ++K+V V NE                   + LV++ LR P + ++A+N
Sbjct: 10  AANWKCNGTTASIEKLVQVFNE--HTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAEN 67
Query: 67  CWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA 126
             + K GAFTGE+S  +L ++ + WVILGHSERR    E +E V  KV+ A  QG  VIA
Sbjct: 68  A-IAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIA 126
Query: 127 CVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQE 184
           C+GETL+QREA  T  VV +QT AIA +++  +W+ +VLAYEPVWAIGTGKVATP QAQE
Sbjct: 127 CIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQE 186
Query: 185 VHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           VH  LRKW+  N   ++AA  RI+YGG S+N
Sbjct: 187 VHLLLRKWVSENIGTDVAAKLRILYGG-SVN 216

>pdb|1M6J|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Entamoeba Histolytica Length = 261

Iteration: 1
 Score =  193 bits (490), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 110/220 (50%), Positives = 137/220 (62%), Gaps = 10/220 (4%)
Query: 4   KFFVGGNWKCNGTPEEVKKIVS-VLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR----- 57
           KF VGGNWKCNGT   ++ +   V                     ++  V+  L      
Sbjct: 5   KFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANG 64
Query: 58  PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYA 117
               V+A+N W K  GA+TGE+   MLV+ ++P+VILGHSERR I +E NE V +KV  A
Sbjct: 65  ANILVSAENAWTK-SGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVA 123
Query: 118 LSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGK 175
           +  GLKVIAC+GET  QR A  T +VVAAQ KAI + +S  +W NI+LAYEPVWAIGTGK
Sbjct: 124 IDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGK 183
Query: 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
            ATP QAQEVH  +RKW+  N S E+A ATRI YGG S+N
Sbjct: 184 TATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGG-SVN 222

>pdb|1YPI|A Chain A, Structure Of Yeast Triosephosphate Isomerase At 1.9- Angstroms Resolution Length = 247

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/211 (45%), Positives = 132/211 (62%), Gaps = 5/211 (2%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXX--XXXXXXXFLGLVKSSLRPGF 60
           R FFVGGN+K NG+ + +K+IV  LN                      + LVK   +P  
Sbjct: 2   RTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVK---KPQV 58
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            V AQN ++K  GAFTGE S + + ++   WVILGHSERR   +E ++F+ DK  +AL Q
Sbjct: 59  TVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQ 118
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           G+ VI C+GETLE+++AG T+DVV  Q  A+ + V  W+N+V+AYEPVWAIGTG  ATP 
Sbjct: 119 GVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPE 178
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
            AQ++H  +RK+L +    + A+  RI+YGG
Sbjct: 179 DAQDIHASIRKFLASKLGDKAASELRILYGG 209

>pdb|4FF7|A Chain A, Structure Of C126s Mutant Of Saccharomyces Cerevisiae Triosephosphate Isomerase Length = 248

Iteration: 1
 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 132/213 (61%), Gaps = 5/213 (2%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXX--XXXXXXXFLGLVKSSLRP 58
           M R FFVGGN+K NG+ + +K+IV  LN                      + LVK   +P
Sbjct: 1   MARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVK---KP 57
Query: 59  GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYAL 118
              V AQN ++K  GAFTGE S + + ++   WVILGHSERR   +E ++F+ DK  +AL
Sbjct: 58  QVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFAL 117
Query: 119 SQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVAT 178
            QG+ VI  +GETLE+++AG T+DVV  Q  A+ + V  W+N+V+AYEPVWAIGTG  AT
Sbjct: 118 GQGVGVILSIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAAT 177
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           P  AQ++H  +RK+L +    + A+  RI+YGG
Sbjct: 178 PEDAQDIHASIRKFLASKLGDKAASELRILYGG 210

>pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosphase Isomerase: The Role Of Histidine-95 Length = 247

Iteration: 1
 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/211 (44%), Positives = 131/211 (62%), Gaps = 5/211 (2%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXX--XXXXXXXFLGLVKSSLRPGF 60
           R FFVGGN+K NG+ + +K+IV  LN                      + LVK   +P  
Sbjct: 2   RTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVK---KPQV 58
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            V AQN ++K  GAFTGE S + + ++   WVILG SERR   +E ++F+ DK  +AL Q
Sbjct: 59  TVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGQSERRSYFHEDDKFIADKTKFALGQ 118
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           G+ VI C+GETLE+++AG T+DVV  Q  A+ + V  W+N+V+AYEPVWAIGTG  ATP 
Sbjct: 119 GVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPE 178
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
            AQ++H  +RK+L +    + A+  RI+YGG
Sbjct: 179 DAQDIHASIRKFLASKLGDKAASELRILYGG 209

>pdb|2OMA|A Chain A, Crystallographic Analysis Of A Chemically Modified Triosephosphate Isomerase From Trypanosoma Cruzi With Dithiobenzylamine (dtba) Length = 250

Iteration: 1
 Score =  184 bits (466), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 100/209 (47%), Positives = 128/209 (61%), Gaps = 10/209 (4%)
Query: 8   GGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR---PGFHVAA 64
             NWKCNG+   +  ++  LN                   FL +  +  R   P F +AA
Sbjct: 9   AANWKCNGSESLLVPLIETLN----AATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAA 64
Query: 65  QNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124
           QN  + + GAFTGE+S ++L +  I WV+LGHSERRL   E NE V +KVA A + G  V
Sbjct: 65  QNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQAXAAGFHV 123
Query: 125 IACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQA 182
           I CVGET E+REAG T  VV  Q  A+A ++S  +WS +V+AYEPVWAIGTGKVATP QA
Sbjct: 124 IVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQA 183
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH  LR+W+ +    +IAA  RI+YGG
Sbjct: 184 QEVHELLRRWVRSKLGTDIAAQLRILYGG 212

>pdb|1CI1|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Trypanosoma Cruzi In Hexane Length = 251

Iteration: 1
 Score =  183 bits (465), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 100/209 (47%), Positives = 128/209 (61%), Gaps = 10/209 (4%)
Query: 8   GGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR---PGFHVAA 64
             NWKCNG+   +  ++  LN                   FL +  +  R   P F +AA
Sbjct: 10  AANWKCNGSESLLVPLIETLNAA----TFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAA 65
Query: 65  QNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124
           QN  + + GAFTGE+S ++L +  I WV+LGHSERRL   E NE V +KVA A + G  V
Sbjct: 66  QNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHV 124
Query: 125 IACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQA 182
           I CVGET E+REAG T  VV  Q  A+A ++S  +WS +V+AYEPVWAIGTGKVATP QA
Sbjct: 125 IVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQA 184
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH  LR+W+ +    +IAA  RI+YGG
Sbjct: 185 QEVHELLRRWVRSKLGTDIAAQLRILYGG 213

>pdb|1TCD|A Chain A, Trypanosoma Cruzi Triosephosphate Isomerase Length = 249

Iteration: 1
 Score =  183 bits (465), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 100/209 (47%), Positives = 128/209 (61%), Gaps = 10/209 (4%)
Query: 8   GGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR---PGFHVAA 64
             NWKCNG+   +  ++  LN                   FL +  +  R   P F +AA
Sbjct: 8   AANWKCNGSESLLVPLIETLN----AATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAA 63
Query: 65  QNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124
           QN  + + GAFTGE+S ++L +  I WV+LGHSERRL   E NE V +KVA A + G  V
Sbjct: 64  QNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHV 122
Query: 125 IACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQA 182
           I CVGET E+REAG T  VV  Q  A+A ++S  +WS +V+AYEPVWAIGTGKVATP QA
Sbjct: 123 IVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQA 182
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH  LR+W+ +    +IAA  RI+YGG
Sbjct: 183 QEVHELLRRWVRSKLGTDIAAQLRILYGG 211

>pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant) Length = 248

Iteration: 1
 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 132/213 (61%), Gaps = 5/213 (2%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXX--XXXXXXXFLGLVKSSLRP 58
           M R FFVGGN+K NG+ + +K+IV  LN                      + LVK   +P
Sbjct: 1   MARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVK---KP 57
Query: 59  GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYAL 118
              V AQN ++K  GAFTGE S + + ++   +VILGHSERR   +E ++F+ DK  +AL
Sbjct: 58  QVTVGAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFAL 117
Query: 119 SQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVAT 178
            QG+ VI C+GETLE+++AG T+DVV  Q  A+ + V  ++N+V+AYEPV AIGTG  AT
Sbjct: 118 GQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVXAIGTGLAAT 177
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           P  AQ++H  +RK+L +    + A+  RI+YGG
Sbjct: 178 PEDAQDIHASIRKFLASKLGDKAASELRILYGG 210

>pdb|3KRS|A Chain A, Structure Of Triosephosphate Isomerase From Cryptosporidium Parvum At 1.55a Resolution Length = 271

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 132/213 (61%), Gaps = 3/213 (1%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG- 59
           M RK+FVGGN+KCNGT E +K ++    + +                 +     +  PG 
Sbjct: 22  MSRKYFVGGNFKCNGTKESLKTLIDSFKQVESSNSEVYVFPTSLHISLVKEFFGNDHPGV 81
Query: 60  FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
           F + +QN      GAFTGE+S EML ++++   ++GHSERR   +E ++ V +KV   L 
Sbjct: 82  FKIGSQNISCTGNGAFTGEVSCEMLKDMDVDCSLVGHSERRQYYSETDQIVNNKVKKGLE 141
Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSWSNIVLAYEPVWAIGTGKVAT 178
            GLK++ C+GE+L +RE G T DV+  Q T+A+ D VS  SN+V+AYEP+WAIGTG VAT
Sbjct: 142 NGLKIVLCIGESLSERETGKTNDVIQKQLTEALKD-VSDLSNLVIAYEPIWAIGTGVVAT 200
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           P QAQE H  +R+++    +P++++  RIIYGG
Sbjct: 201 PGQAQEAHAFIREYVTRMYNPQVSSNLRIIYGG 233

>pdb|1NF0|A Chain A, Triosephosphate Isomerase In Complex With Dhap Length = 247

Iteration: 1
 Score =  180 bits (457), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 92/211 (43%), Positives = 131/211 (62%), Gaps = 5/211 (2%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXX--XXXXXXXFLGLVKSSLRPGF 60
           R FFVGGN+K NG+ + +K+IV  LN                      + LVK   +P  
Sbjct: 2   RTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVK---KPQV 58
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            V AQN ++K  GAFTGE S + + ++   +VILGHSERR   +E ++F+ DK  +AL Q
Sbjct: 59  TVGAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQ 118
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           G+ VI C+GETLE+++AG T+DVV  Q  A+ + V  ++N+V+AYEPV AIGTG  ATP 
Sbjct: 119 GVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVXAIGTGLAATPE 178
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
            AQ++H  +RK+L +    + A+  RI+YGG
Sbjct: 179 DAQDIHASIRKFLASKLGDKAASELRILYGG 209

>pdb|2VFD|A Chain A, Crystal Structure Of The F96s Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Length = 248

Iteration: 1
 Score =  173 bits (439), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 123/215 (57%), Gaps = 2/215 (0%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           M RK+FV  NWKCNGT E +K + +  N                   +    +  L+  F
Sbjct: 1   MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKF 59
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
               QN      G++TGE+SAE+  +L I +VI+GHSERR   +E +E V +K+  +L  
Sbjct: 60  STGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHSERRKYFHETDEDVREKLQASLKN 119
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
            LK + C GE+LEQRE   T++V+  Q KA  D + ++ N++L YEP+WAIGTGK ATP 
Sbjct: 120 NLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPE 179
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQ VH E+RK +      + A   RI+YGG S+N
Sbjct: 180 QAQLVHKEIRKIVKDTCGEKQANQIRILYGG-SVN 213

>pdb|3Q37|A Chain A, Identification Of Amino Acids That Account For Long-Range Interactions In Proteins Using Two Triosephosphate Isomerases From Pathogenic Trypanosomes. Length = 251

Iteration: 1
 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/209 (47%), Positives = 130/209 (62%), Gaps = 10/209 (4%)
Query: 8   GGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR---PGFHVAA 64
             NWKCNG+ + + +++ + N                   FL +  +  R   P F +AA
Sbjct: 10  AANWKCNGSQQSLSELIDLFNS----TSINHDVQCVVAPTFLHIPMTKARLTNPKFQIAA 65
Query: 65  QNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124
           QN  + + GAFTGE+S ++L +  I WV+LGHSERR    E NE V DKVA A++ G  V
Sbjct: 66  QNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRAYYGETNEIVADKVAAAVASGFHV 124
Query: 125 IACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQA 182
           I CVGET E+REAG T  VV  Q  A+A ++S  +WS +V+AYEPVWAIGTGKVATP QA
Sbjct: 125 IVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQA 184
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH  LR+W+ +    +IAA  RI+YGG
Sbjct: 185 QEVHELLRRWVRSKLGTDIAAQLRILYGG 213

>pdb|2VFF|A Chain A, Crystal Structure Of The F96h Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Length = 248

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           M RK+FV  NWKCNGT E +K + +  N                   +    +  L+  F
Sbjct: 1   MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKF 59
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
               QN      G++TGE+SAE+  +L I +VI+GH ERR   +E +E V +K+  +L  
Sbjct: 60  STGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHHERRKYFHETDEDVREKLQASLKN 119
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
            LK + C GE+LEQRE   T++V+  Q KA  D + ++ N++L YEP+WAIGTGK ATP 
Sbjct: 120 NLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPE 179
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQ VH E+RK +      + A   RI+YGG S+N
Sbjct: 180 QAQLVHKEIRKIVKDTCGEKQANQIRILYGG-SVN 213

>pdb|1YDV|A Chain A, Triosephosphate Isomerase (Tim) Length = 248

Iteration: 1
 Score =  171 bits (432), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           M RK+FV  NWKCNGT E +K + +  N                   +    +  L+  F
Sbjct: 1   MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKF 59
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
               QN      G++TGE+SAE+  +L I +VI+GH ERR   +E +E V +K+  +L  
Sbjct: 60  STGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKN 119
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
            LK + C GE+LEQRE   T++V+  Q KA  D + ++ N++L YEP+WAIGTGK ATP 
Sbjct: 120 NLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPE 179
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQ VH E+RK +      + A   RI+YGG S+N
Sbjct: 180 QAQLVHKEIRKIVKDTCGEKQANQIRILYGG-SVN 213

>pdb|3PSV|A Chain A, Structure Of E97d Mutant Of Tim From Plasmodium Falciparum Length = 248

Iteration: 1
 Score =  170 bits (430), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           M RK+FV  NWKCNGT E +K + +  N                   +    +  L+  F
Sbjct: 1   MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKF 59
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
               QN      G++TGE+SAE+  +L I +VI+GH +RR   +E +E V +K+  +L  
Sbjct: 60  STGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFDRRKYFHETDEDVREKLQASLKN 119
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
            LK + C GE+LEQRE   T++V+  Q KA  D + ++ N++L YEP+WAIGTGK ATP 
Sbjct: 120 NLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPE 179
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQ VH E+RK +      + A   RI+YGG S+N
Sbjct: 180 QAQLVHKEIRKIVKDTCGEKQANQIRILYGG-SVN 213

>pdb|3PSW|A Chain A, Structure Of E97q Mutant Of Tim From Plasmodium Falciparum Length = 248

Iteration: 1
 Score =  169 bits (429), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           M RK+FV  NWKCNGT E +K + +  N                   +    +  L+  F
Sbjct: 1   MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKF 59
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
               QN      G++TGE+SAE+  +L I +VI+GH +RR   +E +E V +K+  +L  
Sbjct: 60  STGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFQRRKYFHETDEDVREKLQASLKN 119
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
            LK + C GE+LEQRE   T++V+  Q KA  D + ++ N++L YEP+WAIGTGK ATP 
Sbjct: 120 NLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPE 179
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQ VH E+RK +      + A   RI+YGG S+N
Sbjct: 180 QAQLVHKEIRKIVKDTCGEKQANQIRILYGG-SVN 213

>pdb|2VFH|A Chain A, Crystal Structure Of The F96w Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Complexed With 3- Phosphoglycerate Length = 248

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           M RK+FV  NWKCNGT E +K + +  N                   +    +  L+  F
Sbjct: 1   MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKF 59
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
               QN      G++TGE+SAE+  +L I +VI+GH ERR   +E +E V +K+  +L  
Sbjct: 60  STGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHWERRKYFHETDEDVREKLQASLKN 119
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
            LK + C GE+LEQRE   T++V+  Q KA  D + ++ N++L YEP+WAIGTGK ATP 
Sbjct: 120 NLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPE 179
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQ VH E+RK +      + A   RI+YGG S+N
Sbjct: 180 QAQLVHKEIRKIVKDTCGEKQANQIRILYGG-SVN 213

>pdb|3QSR|A Chain A, Crystal Structure Of Trichomonas Vaginalis Triosephosphate Isomerase Tvag_497370 Gene (Ile-45 Variant) Length = 255

Iteration: 1
 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 127/212 (59%), Gaps = 5/212 (2%)
Query: 3   RKFFVGGNWKCN-GTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFH 61
           R FFVGGNWK N  T EE +K++ +LN  +                FL  ++  LR  + 
Sbjct: 5   RTFFVGGNWKANPKTVEEAEKLIEMLNGAKVEGNVEVVVAAPFI--FLPTLQQKLRKDWK 62
Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           V+A+N + K  GAFTGE++  M+ +  I W ILGHSERR IL E +EF+  K  +AL  G
Sbjct: 63  VSAENVFTKPNGAFTGEVTVPMIKSFGIEWTILGHSERRDILKEDDEFLAAKAKFALENG 122
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATP 179
           +K+I C GE L +REAG   + V+AQ + +   + +  W ++V+AYEP+WAIGTGKVA+ 
Sbjct: 123 MKIIYCCGEHLSEREAGKASEFVSAQIEKMIPAIPAGKWDDVVIAYEPIWAIGTGKVAST 182
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
             AQE+   +R  L A    +IA   RI+YGG
Sbjct: 183 QDAQEMCKVIRDILAAKVGADIANKVRILYGG 214

>pdb|3QST|A Chain A, Crystal Structure Of Trichomonas Vaginalis Triosephosphate Isomerase Tvag_096350 Gene (Val-45 Variant) Length = 255

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 127/212 (59%), Gaps = 5/212 (2%)
Query: 3   RKFFVGGNWKCN-GTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFH 61
           R FFVGGNWK N  T +E +K+V +LN  +                FL  ++  LR  + 
Sbjct: 5   RTFFVGGNWKANPKTVQEAEKLVEMLNGAKVEGNVEVVVAAPFV--FLPTLQQKLRKDWK 62
Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           V+A+N + K  GAFTGE++  M+ +  I W ILGHSERR IL E +EF+  K  +AL  G
Sbjct: 63  VSAENVFTKPNGAFTGEVTVPMIKSFGIEWTILGHSERRDILKEDDEFLAAKAKFALENG 122
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATP 179
           +K+I C GE L +REAG   + V+AQ + +   + +  W ++V+AYEP+WAIGTGKVA+ 
Sbjct: 123 MKIIYCCGEHLSEREAGKASEFVSAQIEKMIPAIPAGKWDDVVIAYEPIWAIGTGKVAST 182
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
             AQE+   +R  L A    +IA   RI+YGG
Sbjct: 183 QDAQEMCKVIRDILAAKVGADIANKVRILYGG 214

>pdb|1VGA|A Chain A, Structures Of Unligated And Inhibitor Complexes Of W168f Mutant Of Triosephosphate Isomerase From Plasmodium Falciparum Length = 248

Iteration: 1
 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           M RK+FV  NWKCNGT E +K + +  N                   +    +  L+  F
Sbjct: 1   MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKF 59
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
               QN      G++TGE+SAE+  +L I +VI+GH ERR   +E +E V +K+  +L  
Sbjct: 60  STGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKN 119
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
            LK + C GE+LEQRE   T++V+  Q KA  D + ++ N++L YEP++AIGTGK ATP 
Sbjct: 120 NLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLFAIGTGKTATPE 179
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQ VH E+RK +      + A   RI+YGG S+N
Sbjct: 180 QAQLVHKEIRKIVKDTCGEKQANQIRILYGG-SVN 213

>pdb|3PWA|A Chain A, Structure Of C126a Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Length = 248

Iteration: 1
 Score =  167 bits (422), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           M RK+FV  NWKCNGT E +K + +  N                   +    +  L+  F
Sbjct: 1   MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKF 59
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
               QN      G++TGE+SAE+  +L I +VI+GH ERR   +E +E V +K+  +L  
Sbjct: 60  STGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKN 119
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
            LK +   GE+LEQRE   T++V+  Q KA  D + ++ N++L YEP+WAIGTGK ATP 
Sbjct: 120 NLKAVVAFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPE 179
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQ VH E+RK +      + A   RI+YGG S+N
Sbjct: 180 QAQLVHKEIRKIVKDTCGEKQANQIRILYGG-SVN 213

>pdb|3PVF|A Chain A, Structure Of C126s Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Complexed With Pga Length = 248

Iteration: 1
 Score =  167 bits (422), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           M RK+FV  NWKCNGT E +K + +  N                   +    +  L+  F
Sbjct: 1   MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKF 59
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
               QN      G++TGE+SAE+  +L I +VI+GH ERR   +E +E V +K+  +L  
Sbjct: 60  STGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKN 119
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
            LK +   GE+LEQRE   T++V+  Q KA  D + ++ N++L YEP+WAIGTGK ATP 
Sbjct: 120 NLKAVVSFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPE 179
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQ VH E+RK +      + A   RI+YGG S+N
Sbjct: 180 QAQLVHKEIRKIVKDTCGEKQANQIRILYGG-SVN 213

>pdb|2YC6|A Chain A, Crystal Structure Of A Triple Mutant (A198v, C202a And C222n) Of Triosephosphate Isomerase From Giardia Lamblia Complexed With 2-Phosphoglycolic Acid Length = 257

Iteration: 1
 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 5/213 (2%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           R+ F+GGN+KCNG+ + +K  V+ +   +                   +  ++ +    +
Sbjct: 4   RRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQ-LRI 62
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQN +++  GA+TGE S EML ++ +  VI+GHSERR I+ E +E    K   AL +G+
Sbjct: 63  AAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGM 122
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVAT 178
            VI CVGETL++R+A  TM+V  AQ +A+   +      W  +V+AYEPVW+IGTG VAT
Sbjct: 123 TVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVAT 182
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           P QA+EVH  LRKW +   + E A   RIIYGG
Sbjct: 183 PEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGG 215

>pdb|2DP3|A Chain A, Crystal Structure Of A Double Mutant (C202aA198V) OF TRIOSEPHOSPHATE Isomerase From Giardia Lamblia Length = 257

Iteration: 1
 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 5/213 (2%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           R+ F+GGN+KCNG+ + +K  V+ +   +                   +  ++ +    +
Sbjct: 4   RRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQ-LRI 62
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQN +++  GA+TGE S EML ++ +  VI+GHSERR I+ E +E    K   AL +G+
Sbjct: 63  AAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGM 122
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVAT 178
            VI CVGETL++R+A  TM+V  AQ +A+   +      W  +V+AYEPVW+IGTG VAT
Sbjct: 123 TVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVAT 182
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           P QA+EVH  LRKW +   + E A   RIIYGG
Sbjct: 183 PEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGG 215

>pdb|2YC8|A Chain A, Crystal Structure Of A Double Mutant (C202a And C222n) Of Triosephosphate Isomerase From Giardia Lamblia. Length = 255

Iteration: 1
 Score =  163 bits (413), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 126/213 (59%), Gaps = 5/213 (2%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           R+ F+GGN+KCNG+ + +K  V+ +   +                   +  ++ +    +
Sbjct: 4   RRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQ-LRI 62
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQN +++  GA+TGE S EML ++ +  VI+GHSERR I+ E +E    K   AL +G+
Sbjct: 63  AAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGM 122
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVAT 178
            VI CVGETL++R+A  TM+V  AQ +A+   +      W  +V+AYEPVW+IGTG VAT
Sbjct: 123 TVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVAT 182
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           P QA+EVH  LRKW     + E A   RIIYGG
Sbjct: 183 PEQAEEVHVGLRKWFAEKVAAEGAQHIRIIYGG 215

>pdb|2YC7|A Chain A, Crystal Structure Of A Mutant (C202a) Of Triosephosphate Isomerase From Giardia Lamblia Complexed With 2-Phosphoglycolic Acid Length = 257

Iteration: 1
 Score =  163 bits (413), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 126/213 (59%), Gaps = 5/213 (2%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           R+ F+GGN+KCNG+ + +K  V+ +   +                   +  ++ +    +
Sbjct: 4   RRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQ-LRI 62
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQN +++  GA+TGE S EML ++ +  VI+GHSERR I+ E +E    K   AL +G+
Sbjct: 63  AAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGM 122
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVAT 178
            VI CVGETL++R+A  TM+V  AQ +A+   +      W  +V+AYEPVW+IGTG VAT
Sbjct: 123 TVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVAT 182
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           P QA+EVH  LRKW     + E A   RIIYGG
Sbjct: 183 PEQAEEVHVGLRKWFAEKVAAEGAQHIRIIYGG 215

>pdb|2V5B|A Chain A, The Monomerization Of Triosephosphate Isomerase From Trypanosoma Cruzi Length = 244

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/212 (44%), Positives = 121/212 (57%), Gaps = 23/212 (10%)
Query: 8   GGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR---PGFHVAA 64
             NWKCNG+   +  ++  LN                   FL +  +  R   P F +AA
Sbjct: 10  AANWKCNGSESLLVPLIETLNAA----TFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAA 65
Query: 65  QNCWVKKGGAFTGEISAEMLVNLE---IPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           QN             +A+ L +L+   I WV+LGHSERRL   E NE V +KVA A + G
Sbjct: 66  QNAG-----------NADALASLKDYGISWVVLGHSERRLYYGETNEIVAEKVAQAXAAG 114
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATP 179
             VI CVGET E+REAG T  VV  Q  A+A ++S  +WS +V+AYEPVWAIGTGKVATP
Sbjct: 115 FHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATP 174
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
            QAQEVH  LR+W+ +    +IAA  RI+YGG
Sbjct: 175 QQAQEVHELLRRWVRSKLGTDIAAQLRILYGG 206

>pdb|3PF3|A Chain A, Crystal Structure Of A Mutant (C202a) Of Triosephosphate Isomerase From Giardia Lamblia Derivatized With Mmts Length = 257

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 125/213 (58%), Gaps = 5/213 (2%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           R+ F+GGN+K NG+ + +K  V+ +   +                   +  ++ +    +
Sbjct: 4   RRPFIGGNFKXNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQ-LRI 62
Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQN +++  GA+TGE S EML ++ +  VI+GHSERR I+ E +E    K   AL +G+
Sbjct: 63  AAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGM 122
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVAT 178
            VI CVGETL++R+A  TM+V  AQ +A+   +      W  +V+AYEPVW+IGTG VAT
Sbjct: 123 TVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVAT 182
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           P QA+EVH  LRKW     + E A   RIIYGG
Sbjct: 183 PEQAEEVHVGLRKWFAEKVAAEGAQHIRIIYGG 215

>pdb|4TIM|A Chain A, Crystallographic And Molecular Modeling Studies On Trypanosomal Triosephosphate Isomerase: A Critical Assessment Of The Predicted And Observed Structures Of The Complex With 2-Phosphoglycerate Length = 250

Iteration: 1
 Score =  156 bits (395), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/209 (44%), Positives = 126/209 (60%), Gaps = 7/209 (3%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWKCNG+ + + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 11  NWKCNGSQQSLSELIDLFNS--TSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNA- 67
Query: 69  VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV 128
           + K GAFTGE+S  +L +  + W++LGHSERR    E NE V DKVA A++ G  VIAC+
Sbjct: 68  IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACI 127
Query: 129 GETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
           GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKVATP QAQE H
Sbjct: 128 GETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAH 187
Query: 187 FELRKWLLANTSPEIAAATRIIYGGISIN 215
             +R W+ +    ++A   RI+YGG S+N
Sbjct: 188 ALIRSWVSSKIGADVAGELRILYGG-SVN 215

>pdb|3TIM|A Chain A, The Crystal Structure Of The "open" And The "closed" Conformation Of The Flexible Loop Of Trypanosomal Triosephosphate Isomerase Length = 250

Iteration: 1
 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/209 (43%), Positives = 125/209 (59%), Gaps = 7/209 (3%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWKCNG+ + + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 11  NWKCNGSQQSLSELIDLFNS--TSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNA- 67
Query: 69  VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV 128
           + K GAFTGE+S  +L +  + W++LGHSERR    E NE V DKVA A++ G  VIAC+
Sbjct: 68  IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACI 127
Query: 129 GETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
           GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKVATP QAQE H
Sbjct: 128 GETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAH 187
Query: 187 FELRKWLLANTSPEIAAATRIIYGGISIN 215
             +R W+ +    ++    RI+YGG S+N
Sbjct: 188 ALIRSWVSSKIGADVRGELRILYGG-SVN 215

>pdb|2V0T|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The Flexible Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More Closed Conformation Of This Hinge Region In Dimeric And Monomeric Tim Length = 250

Iteration: 1
 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/209 (43%), Positives = 125/209 (59%), Gaps = 7/209 (3%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWKCNG+ + + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 11  NWKCNGSQQSLSELIDLFNS--TSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNA- 67
Query: 69  VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV 128
           + K GAFTGE+S  +L +  + W++LGHSERR    E NE V DKVA A++ G  VIAC+
Sbjct: 68  IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACI 127
Query: 129 GETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
           GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKV TP QAQE H
Sbjct: 128 GETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVLTPQQAQEAH 187
Query: 187 FELRKWLLANTSPEIAAATRIIYGGISIN 215
             +R W+ +    ++A   RI+YGG S+N
Sbjct: 188 ALIRSWVSSKIGADVAGELRILYGG-SVN 215

>pdb|1KV5|A Chain A, Structure Of Trypanosoma Brucei Brucei Tim With The Salt-Bridge- Forming Residue Arg191 Mutated To Ser Length = 250

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/209 (43%), Positives = 125/209 (59%), Gaps = 7/209 (3%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWKCNG+ + + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 11  NWKCNGSQQSLSELIDLFNS--TSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNA- 67
Query: 69  VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV 128
           + K GAFTGE+S  +L +  + W++LGHSERR    E NE V DKVA A++ G  VIAC+
Sbjct: 68  IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACI 127
Query: 129 GETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
           GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKVATP QAQE H
Sbjct: 128 GETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAH 187
Query: 187 FELRKWLLANTSPEIAAATRIIYGGISIN 215
             +  W+ +    ++A   RI+YGG S+N
Sbjct: 188 ALISSWVSSKIGADVAGELRILYGG-SVN 215

>pdb|2J24|A Chain A, The Functional Role Of The Conserved Active Site Proline Of Triosephosphate Isomerase Length = 250

Iteration: 1
 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 91/209 (43%), Positives = 125/209 (59%), Gaps = 7/209 (3%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWKCNG+ + + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 11  NWKCNGSQQSLSELIDLFNS--TSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNA- 67
Query: 69  VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV 128
           + K GAFTGE+S  +L +  + W++LGHSERR    E NE V DKVA A++ G  VIAC+
Sbjct: 68  IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACI 127
Query: 129 GETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
           GETL++RE+G T  VV  Q    A   + + W+ +V+AYE VWAIGTGKVATP QAQE H
Sbjct: 128 GETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEAVWAIGTGKVATPQQAQEAH 187
Query: 187 FELRKWLLANTSPEIAAATRIIYGGISIN 215
             +R W+ +    ++A   RI+YGG S+N
Sbjct: 188 ALIRSWVSSKIGADVAGELRILYGG-SVN 215

>pdb|1B9B|A Chain A, Triosephosphate Isomerase Of Thermotoga Maritima Length = 255

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVL-NE-GQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           RK  + GNWK + T  E KK VS+L NE                    +G + S      
Sbjct: 3   RKLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSG--RNI 60
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            + AQN + +  GAFTGEIS  ML  + + +VI+GHSERR I  E +EF+  KV   L +
Sbjct: 61  KLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEK 120
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKA--IADRVSSWSNIVLAYEPVWAIGTGKVAT 178
           G+  I CVGETLE+RE G T  VV  Q +             +V+AYEPVWAIGTG+VAT
Sbjct: 121 GMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVAT 180
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           P QAQEVH  +RK L      E A + RI+YGG
Sbjct: 181 PQQAQEVHAFIRKLLSEMYDEETAGSIRILYGG 213

>pdb|2Y6Z|A Chain A, Crystallographic Structure Of Gm23 An Example Of Catalytic Migration From Tim To Thiamin Phosphate Synthase Length = 256

Iteration: 1
 Score =  140 bits (353), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 18/212 (8%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWKCNG  + + +++ + N                      + K  L  P F +AAQN  
Sbjct: 22  NWKCNGGGQSLSELIDLFNSTSINHDVQCVVAPSWYMGAQAMTKERLSHPKFVIAAQNAG 81
Query: 69  VKKGGAFTGEISAEMLVNLE---IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI 125
                      +A+ L +L+   I W++LGHSERR    E NE V DKVA A++ G  VI
Sbjct: 82  -----------NADALASLKDFGISWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVI 130
Query: 126 ACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
           AC+GETL++R +G T  VV  Q  AIA ++  + W+ +V+AYEPVWAIGTGKVATP QAQ
Sbjct: 131 ACIGETLQERSSGRTAVVVLTQITAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQ 190
Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           E H  +R W+ +    ++A   RI+YGG S+N
Sbjct: 191 EAHALIRSWVSSKVGADVAGELRILYGG-SVN 221

>pdb|2Y70|A Chain A, Crystallographic Structure Of Gm23, Mutant G89d, An Example Of Catalytic Migration From Tim To Thiamin Phosphate Synthase. Length = 245

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/216 (39%), Positives = 120/216 (55%), Gaps = 18/216 (8%)
Query: 6   FVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAA 64
               NWKCNG+ + + +++ + N                      + K  L  P F +AA
Sbjct: 7   IAAANWKCNGSQQSLSELIDLFNSTSINHDVQCVVAPSWYMGAQAMTKERLSHPKFVIAA 66
Query: 65  QNCWVKKGGAFTGEISAEMLVNLE---IPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           QN             +A+ L +L+   I W++L HSERR    E NE V DKVA A++ G
Sbjct: 67  QNAG-----------NADALASLKDFGISWIVLDHSERRAYYGETNEIVADKVAAAVASG 115
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATP 179
             VIAC+GETL++R +G T  VV  Q  AIA ++  + W+ +V+AYEPVWAIGTGKVATP
Sbjct: 116 FMVIACIGETLQERSSGRTAVVVLTQITAIAKKLKKADWAKVVIAYEPVWAIGTGKVATP 175
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
            QAQE H  +R W+ +    ++A   RI+YGG S+N
Sbjct: 176 QQAQEAHALIRSWVSSKVGADVAGELRILYGG-SVN 210

>pdb|2BTM|A Chain A, Does The His12-Lys13 Pair Play A Role In The Adaptation Of Thermophilic Tims To High Temperatures? Length = 252

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/212 (41%), Positives = 114/212 (53%), Gaps = 4/212 (1%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFH 61
           RK  + GNWK NGT  E  + V  + +G                 FL  LV+++      
Sbjct: 1   RKPIIAGNWKMNGTLAEAVQFVEDV-KGHVPPADEVISVVCAPFLFLDRLVQAADGTDLK 59
Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           + AQ       GA+TGE+S  ML +L + +VILGHSERR +  E +E V  KV  A ++G
Sbjct: 60  IGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRG 119
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQT-KAIADRVSSW-SNIVLAYEPVWAIGTGKVATP 179
           L  I C GE+LE+REAG T  VVA+Q  KA+A          V+AYEP+WAIGTGK +TP
Sbjct: 120 LIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTP 179
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
             A  V   +R  +     PE A A RI YGG
Sbjct: 180 EDANSVCGHIRSVVSRLFGPEAAEAIRIQYGG 211

>pdb|2WSQ|A Chain A, Monotim Mutant Rmm0-1, Dimeric Form. Length = 242

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 117/209 (55%), Gaps = 14/209 (6%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWKCNG+ + + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 10  NWKCNGSQQSLSELIDLFNS--TSINHDVQCVVAPSFVHLAMTKERLSHPKFVIAAQNAG 67
Query: 69  VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV 128
              G A         L +  + W++LGHSERR    E NE V DKVA A++ G  VIAC+
Sbjct: 68  NADGLA--------SLKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACI 119
Query: 129 GETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
           GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKVATP QAQE H
Sbjct: 120 GETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQETH 179
Query: 187 FELRKWLLANTSPEIAAATRIIYGGISIN 215
             +R W+ +    ++A   RI+YGG S+N
Sbjct: 180 ALIRSWVSSKIGADVAGELRILYGG-SVN 207

>pdb|1ML1|A Chain A, Protein Engineering With Monomeric Triosephosphate Isomerase: The Modelling And Structure Verification Of A Seven Residue Loop Length = 243

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/212 (40%), Positives = 121/212 (57%), Gaps = 20/212 (9%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWKC+G+P+ + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 11  NWKCSGSPDSLSELIDLFNS--TSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAG 68
Query: 69  VKKGGAFTGEISAEMLVNLE---IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI 125
                      +A+ L +L+   + W++LGHSERR    E NE V DKVA A++ G  VI
Sbjct: 69  -----------NADALASLKDFGVNWIVLGHSERRWYYGETNEIVADKVAAAVASGFMVI 117
Query: 126 ACVGETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
           AC+GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKVATP QAQ
Sbjct: 118 ACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQ 177
Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           E H  +R W+ +    ++A   RI+YGG S+N
Sbjct: 178 EAHALIRSWVSSKIGADVAGELRILYGG-SVN 208

>pdb|1TTI|A Chain A, Three New Crystal Structures Of Point Mutation Variants Of Monotim: Conformational Flexibility Of Loop-1,Loop-4 And Loop-8 Length = 243

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 117/209 (55%), Gaps = 14/209 (6%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWKCNG+ + + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 11  NWKCNGSQQSLSELIDLFNS--TSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAG 68
Query: 69  VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV 128
              G A         L +  + W++LGHSERR    E NE V DKVA A++ G  VIAC+
Sbjct: 69  NADGLA--------SLKDFGVNWIVLGHSERRWYYGETNEIVADKVAAAVASGFMVIACI 120
Query: 129 GETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
           GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKVATP QAQE H
Sbjct: 121 GETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAH 180
Query: 187 FELRKWLLANTSPEIAAATRIIYGGISIN 215
             +R W+ +    ++A   RI+YGG S+N
Sbjct: 181 ALIRSWVSSKIGADVAGELRILYGG-SVN 208

>pdb|1MSS|A Chain A, Large Scale Structural Rearrangements Of The Front Loops In Monomerised Triosephosphate Isomerase, As Deduced From The Comparison Of The Structural Properties Of Monotim And Its Point Mutation Variant Monoss Length = 243

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/212 (40%), Positives = 120/212 (56%), Gaps = 20/212 (9%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWKCNG+ + + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 11  NWKCNGSQQSLSELIDLFNS--TSINHDVQCVVASTSSHLAMTKERLSHPKFVIAAQNAG 68
Query: 69  VKKGGAFTGEISAEMLVNLE---IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI 125
                      +A+ L +L+   + W++LGHSERR    E NE V DKVA A++ G  VI
Sbjct: 69  -----------NADALASLKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVI 117
Query: 126 ACVGETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
           AC+GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKVATP QAQ
Sbjct: 118 ACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQ 177
Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           E H  +R W+ +    ++A   RI+YGG S+N
Sbjct: 178 EAHALIRSWVSSKIGADVAGELRILYGG-SVN 208

>pdb|2WSR|A Chain A, Monotim Mutant Rmm0-1, Monomeric Form Length = 242

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 117/209 (55%), Gaps = 14/209 (6%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWKCNG+ + + +++ + N                    + + K  L  P F +AAQN  
Sbjct: 10  NWKCNGSQQSLSELIDLFNS--TSINHDVQCVVAPRFVMIAMTKERLSHPKFVIAAQNAG 67
Query: 69  VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV 128
              G A         L +  + W++LGHSERR    E NE V DKVA A++ G  VIAC+
Sbjct: 68  NADGLA--------SLKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACI 119
Query: 129 GETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
           GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKVATP QAQE H
Sbjct: 120 GETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQETH 179
Query: 187 FELRKWLLANTSPEIAAATRIIYGGISIN 215
             +R W+ +    ++A   RI+YGG S+N
Sbjct: 180 ALIRSWVSSKIGADVAGELRILYGG-SVN 207

>pdb|1TRI|A Chain A, The Crystal Structure Of An Engineered Monomeric Triosephosphate Isomerase, Monotim: The Correct Modelling Of An Eight-Residue Loop Length = 243

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/212 (40%), Positives = 120/212 (56%), Gaps = 20/212 (9%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWKCNG+ + + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 11  NWKCNGSQQSLSELIDLFNS--TSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAG 68
Query: 69  VKKGGAFTGEISAEMLVNLE---IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI 125
                      +A+ L +L+   + W++LGHSERR    E NE V DKVA A++ G  VI
Sbjct: 69  -----------NADALASLKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVI 117
Query: 126 ACVGETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
           AC+GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKVATP QAQ
Sbjct: 118 ACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQ 177
Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           E H  +R W+ +    ++A   RI+YGG S+N
Sbjct: 178 EAHALIRSWVSSKIGADVAGELRILYGG-SVN 208

>pdb|3UWU|A Chain A, Crystal Structure Of Staphylococcus Aureus Triosephosphate Isomerase Complexed With Glycerol-3-Phosphate Length = 261

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 109/213 (51%), Gaps = 4/213 (1%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLN--EGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           R   + GNWK N T +E K  V+ L                          VK     G 
Sbjct: 10  RTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGL 69
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            + AQN + +  GAFTGE S   L +L + +V++GHSERR + +E +E +  K       
Sbjct: 70  EIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKH 129
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVAT 178
           G+  I CVGET E+RE+G   DVV  Q K     +S     ++V+AYEP+WAIGTGK +T
Sbjct: 130 GMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSST 189
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
              A E+   +R+ +   +S E++ ATRI YGG
Sbjct: 190 SEDANEMCAFVRQTIADLSSKEVSEATRIQYGG 222

>pdb|3M9Y|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Methicillin Resistant Staphylococcus Aureus At 1.9 Angstrom Resolution Length = 254

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 109/213 (51%), Gaps = 4/213 (1%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLN--EGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           R   + GNWK N T +E K  V+ L                          VK     G 
Sbjct: 3   RTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGL 62
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            + AQN + +  GAFTGE S   L +L + +V++GHSERR + +E +E +  K       
Sbjct: 63  EIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKH 122
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVAT 178
           G+  I CVGET E+RE+G   DVV  Q K     +S     ++V+AYEP+WAIGTGK +T
Sbjct: 123 GMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSST 182
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
              A E+   +R+ +   +S E++ ATRI YGG
Sbjct: 183 SEDANEMCAFVRQTIADLSSKEVSEATRIQYGG 215

>pdb|1TMH|A Chain A, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal Structure Of A Chimeric E. Coli Tim Having The Eighth (beta-alpha)-unit Replaced By The Equivalent Unit Of Chicken Tim Length = 254

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/217 (39%), Positives = 115/217 (52%), Gaps = 8/217 (3%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           R   V GNWK NG+   V ++VS L + +                ++ + K     G H+
Sbjct: 2   RHPLVMGNWKLNGSRHMVHELVSNLRK-ELAGVAGCAVAIAPPEMYIDMAKREAE-GSHI 59
Query: 63  --AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
              AQN  +   GAFTGE SA ML ++   ++I+GHSERR    E +E +  K A    Q
Sbjct: 60  MLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQ 119
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVAT 178
           GL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK AT
Sbjct: 120 GLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSAT 179
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           PAQAQ VH  +R   +A     IA    I YGG S+N
Sbjct: 180 PAQAQAVHKFIRDH-IAKVDANIAEQVIIQYGG-SVN 214

>pdb|4IOT|A Chain A, High-resolution Structure Of Triosephosphate Isomerase From E. Coli Length = 255

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/217 (39%), Positives = 115/217 (52%), Gaps = 8/217 (3%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           R   V GNWK NG+   V ++VS L + +                ++ + K     G H+
Sbjct: 2   RHPLVMGNWKLNGSRHMVHELVSNLRK-ELAGVAGCAVAIAPPEMYIDMAKREAE-GSHI 59
Query: 63  --AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
              AQN  +   GAFTGE SA ML ++   ++I+GHSERR    E +E +  K A    Q
Sbjct: 60  MLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQ 119
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVAT 178
           GL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK AT
Sbjct: 120 GLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSAT 179
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           PAQAQ VH  +R   +A     IA    I YGG S+N
Sbjct: 180 PAQAQAVHKFIRDH-IAKVDANIAEQVIIQYGG-SVN 214

>pdb|1TRE|A Chain A, The Structure Of Triosephosphate Isomerase From Escherichia Coli Determined At 2.6 Angstrom Resolution Length = 255

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/217 (39%), Positives = 115/217 (52%), Gaps = 8/217 (3%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHV 62
           R   V GNWK NG+   V ++VS L + +                ++ + K     G H+
Sbjct: 2   RHPLVMGNWKLNGSRHMVHELVSNLRK-ELAGVAGCAVAIAPPEMYIDMAKREAE-GSHI 59
Query: 63  --AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
              AQN  +   GAFTGE SA ML ++   ++I+GHSERR    E +E +  K A    Q
Sbjct: 60  MLGAQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQ 119
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVAT 178
           GL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK AT
Sbjct: 120 GLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSAT 179
Query: 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           PAQAQ VH  +R   +A     IA    I YGG S+N
Sbjct: 180 PAQAQAVHKFIRDH-IAKVDANIAEQVIIQYGG-SVN 214

>pdb|1BTM|A Chain A, Triosephosphate Isomerase (Tim) Complexed With 2- Phosphoglycolic Acid Length = 252

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/212 (40%), Positives = 113/212 (53%), Gaps = 4/212 (1%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPGFH 61
           RK  + GNWK + T  E  + V  + +G                 FL  LV+++      
Sbjct: 1   RKPIIAGNWKMHKTLAEAVQFVEDV-KGHVPPADEVISVVCAPFLFLDRLVQAADGTDLK 59
Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           + AQ       GA+TGE+S  ML +L + +VILGHSERR +  E +E V  KV  A ++G
Sbjct: 60  IGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRG 119
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQT-KAIADRVSSW-SNIVLAYEPVWAIGTGKVATP 179
           L  I C GE+LE+REAG T  VVA+Q  KA+A          V+AYEP+WAIGTGK +TP
Sbjct: 120 LIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTP 179
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
             A  V   +R  +     PE A A RI YGG
Sbjct: 180 EDANSVCGHIRSVVSRLFGPEAAEAIRIQYGG 211

>pdb|1DKW|A Chain A, Crystal Structure Of Triose-Phosphate Isomerase With Modified Substrate Binding Site Length = 238

Iteration: 1
 Score =  130 bits (326), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 117/209 (55%), Gaps = 15/209 (7%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWK +G+P+ + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 10  NWK-SGSPDSLSELIDLFNS--TSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNA- 65
Query: 69  VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV 128
                    E S   L +  + W++LGHSERR    E NE V DKVA A++ G  VIAC+
Sbjct: 66  -------GNEDSLPSLKDFGVNWIVLGHSERRWYYGETNEIVADKVAAAVASGFMVIACI 118
Query: 129 GETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
           GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKVATP QAQE H
Sbjct: 119 GETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAH 178
Query: 187 FELRKWLLANTSPEIAAATRIIYGGISIN 215
             +R W+ +    ++A   RI+YGG S+N
Sbjct: 179 ALIRSWVSSKIGADVAGELRILYGG-SVN 206

>pdb|2VEK|A Chain A, Structure-Based Enzyme Engineering Efforts With An Inactive Monomeric Tim Variant: The Importance Of A Single Point Mutation For Generating An Active Site With Suitable Binding Properties Length = 238

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/212 (40%), Positives = 120/212 (56%), Gaps = 21/212 (9%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWK +G+P+ + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 10  NWK-SGSPDSLSELIDLFNS--TSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAG 66
Query: 69  VKKGGAFTGEISAEMLVNLE---IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI 125
                      +A+ L +L+   + W++LGHSERR    E NE V DKVA A++ G  VI
Sbjct: 67  -----------NADALASLKDFGVNWIVLGHSERRWYYGETNEIVADKVAAAVASGFMVI 115
Query: 126 ACVGETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
           AC+GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKVATP QAQ
Sbjct: 116 ACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQ 175
Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           E H  +R W+ +    ++A   RI+YGG S+N
Sbjct: 176 EAHALIRSWVSSKIGADVAGELRILYGG-SVN 206

>pdb|2VEI|A Chain A, Structure-Based Enzyme Engineering Efforts With An Inactive Monomeric Tim Variant: The Importance Of A Single Point Mutation For Generating An Active Site With Suitable Binding Properties Length = 238

Iteration: 1
 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/212 (40%), Positives = 120/212 (56%), Gaps = 21/212 (9%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWK +G+P+ + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 10  NWK-SGSPDSLSELIDLFNS--TSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAG 66
Query: 69  VKKGGAFTGEISAEMLVNLE---IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI 125
                      +A+ L +L+   + W++LGHSERR    E NE V DKVA A++ G  VI
Sbjct: 67  -----------NADALASLKDFGVNWIVLGHSERRWYYGETNEIVADKVAAAVASGFMVI 115
Query: 126 ACVGETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
           AC+GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKVATP QAQ
Sbjct: 116 ACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQ 175
Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           E H  +R W+ +    ++A   RI+YGG S+N
Sbjct: 176 EAHALIRSWVSSKIGADVAGELRILYGG-SVN 206

>pdb|2V2D|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The Flexible Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More Closed Conformation Of This Hinge Region In Dimeric And Monomeric Tim Length = 242

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/212 (39%), Positives = 119/212 (56%), Gaps = 21/212 (9%)
Query: 10  NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPGFHVAAQNCW 68
           NWK +G+P+ + +++ + N                    L + K  L  P F +AAQN  
Sbjct: 11  NWK-SGSPDSLSELIDLFNS--TSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAG 67
Query: 69  VKKGGAFTGEISAEMLVNLE---IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI 125
                      +A+ L +L+   + W++LGHSERR    E NE V DKVA A++ G  VI
Sbjct: 68  -----------NADALASLKDFGVNWIVLGHSERRWYYGETNEIVADKVAAAVASGFMVI 116
Query: 126 ACVGETLEQREAGSTMDVVAAQ--TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
           AC+GETL++RE+G T  VV  Q    A   + + W+ +V+AYEPVWAIGTGKV TP QAQ
Sbjct: 117 ACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVLTPQQAQ 176
Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           E H  +R W+ +    ++A   RI+YGG S+N
Sbjct: 177 EAHALIRSWVSSKIGADVAGELRILYGG-SVN 207

>pdb|1AW1|A Chain A, Triosephosphate Isomerase Of Vibrio Marinus Complexed With 2-Phosphoglycolate Length = 256

Iteration: 1
 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/214 (36%), Positives = 109/214 (50%), Gaps = 7/214 (3%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR---PG 59
           R   V GNWK NG+ E V  +++ LN  +                F+ L + +L      
Sbjct: 2   RHPVVMGNWKLNGSKEMVVDLLNGLN-AELEGVTGVDVAVAPPALFVDLAERTLTEAGSA 60
Query: 60  FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
             + AQN  +   GAFTG++S  ML       +I+GHSERR    E +EFV  K A+   
Sbjct: 61  IILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKE 120
Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVA 177
            GL  + C+GE+  Q EAG TM V A Q  A+ +   V +    ++AYEP+WAIGTGK A
Sbjct: 121 NGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAA 180
Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           T   AQ +H ++R   +A  S  +A    I YGG
Sbjct: 181 TAEDAQRIHAQIRAH-IAEKSEAVAKNVVIQYGG 213

>pdb|1YYA|A Chain A, Crystal Structure Of Tt0473, Putative Triosephosphate Isomerase From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 109/218 (50%), Gaps = 10/218 (4%)
Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL---RPG 59
           R+  V GNWK + TP E +   + L   +                 L + K  L   + G
Sbjct: 2   RRVLVAGNWKMHKTPSEARVWFAELK--RLLPPLQSEAAVLPAFPILPVAKEVLAETQVG 59
Query: 60  FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
           +   AQ+    K GA+TGE+SA ML +L   + I+GHSERR    E +  V +K    L 
Sbjct: 60  Y--GAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLE 117
Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN--IVLAYEPVWAIGTGKVA 177
           +G+  I CVGE LE RE G  +     Q +   + V       +V+AYEPVWAIGTGK A
Sbjct: 118 EGITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNA 177
Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           TP  A+ +H  +RK L        A+  RI+YGG S+N
Sbjct: 178 TPEDAEAMHQAIRKALSERYGEAFASRVRILYGG-SVN 214

>pdb|4G1K|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Burkholderia Thailandensis Length = 272

Iteration: 1
 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 112/206 (54%), Gaps = 7/206 (3%)
Query: 9   GNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPG-FHVAAQNC 67
           GNWK +G     + +++ + +G                 +L   ++ L+ G     +Q+ 
Sbjct: 32  GNWKMHGRLSGNQALLTEVAQGAQAVHDNVAIGVCVPFPYLAQAQAQLQGGRVSWGSQDV 91
Query: 68  WVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIAC 127
              + GA+TGE++A M+      + I+GHSERR    E NE V  K   AL+ GL  I C
Sbjct: 92  SAHEQGAYTGEVAAGMVAEFGAAYAIVGHSERRAYHGESNETVAAKARRALAAGLTPIVC 151
Query: 128 VGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEV 185
           VGETL +REAG+T  VV AQ  A+   +S    + IV+AYEPVWAIGTGK AT  QAQ+V
Sbjct: 152 VGETLAEREAGTTEQVVGAQLDAVLAVLSPDEAARIVVAYEPVWAIGTGKSATAEQAQQV 211
Query: 186 HFELRKWLLANTSPEIAAATRIIYGG 211
           H  LR  L A  +  ++    ++YGG
Sbjct: 212 HAFLRGRLAAKGAGHVS----LLYGG 233

>pdb|3KXQ|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Bartonella Henselae At 1.6a Resolution Length = 275

Iteration: 1
 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 107/211 (50%), Gaps = 10/211 (4%)
Query: 6   FVGGNWKCNGTPE---EVKKIVSVLNE--GQXXXXXXXXXXXXXXXXFLGLVKSSLRPGF 60
           F+ GNWK NGT E   E++ I + ++   G+                F  L   ++  G 
Sbjct: 29  FIAGNWKMNGTGESLGELRAIAAGISSDLGRLFEALICVPATLLSRAFDILGGENILLG- 87
Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
               QNC     G +TG+ISA ML       VI+GHSERR +  E +  V  KV  A   
Sbjct: 88  ---GQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWRA 144
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GL  + CVGETLE+R++   +DV+  Q +      ++  NI++AYEPVWA+GTG  AT A
Sbjct: 145 GLVALICVGETLEERKSNKVLDVLTRQLEGSLPDGATAENIIIAYEPVWAVGTGNTATSA 204
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
              EVH  +   + +    E  A  R++YGG
Sbjct: 205 DVAEVHAFIHHKMHSRFGDE-GAKIRLLYGG 234

>pdb|3TA6|A Chain A, Structure Of Mycobacterium Tuberculosis Triosephosphate Isomerase Length = 267

Iteration: 1
 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 114/224 (50%), Gaps = 13/224 (5%)
Query: 1   MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL 56
           M RK  + GNWK N    E    V+KI   L +                   +  +    
Sbjct: 1   MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGD 60
Query: 57  RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAY 116
           +      AQ+      GA+TG++S   L  L   +V++GHSERR   NE +  V  K A 
Sbjct: 61  KLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAAT 120
Query: 117 ALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAI 171
           AL  GL  I C+GE L+ REAG+ +     Q +      +A+++ S   +V+AYEPVWAI
Sbjct: 121 ALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGS---VVIAYEPVWAI 177
Query: 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           GTG+VA+ A AQEV   +RK L +  SP IA   R++YGG S+N
Sbjct: 178 GTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGG-SVN 220

>pdb|3GVG|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Mycobacterium Tuberculosis Length = 283

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 113/222 (50%), Gaps = 13/222 (5%)
Query: 3   RKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRP 58
           RK  + GNWK N    E    V+KI   L +                   +  +    + 
Sbjct: 25  RKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKL 84
Query: 59  GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYAL 118
                AQ+      GA+TG++S   L  L   +V++GHSERR   NE +  V  K A AL
Sbjct: 85  RLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATAL 144
Query: 119 SQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGT 173
             GL  I C+GE L+ REAG+ +     Q +      +A+++ S   +V+AYEPVWAIGT
Sbjct: 145 KHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGS---VVIAYEPVWAIGT 201
Query: 174 GKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           G+VA+ A AQEV   +RK L +  SP IA   R++YGG S+N
Sbjct: 202 GRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGG-SVN 242

>pdb|2JGQ|A Chain A, Kinetics And Structural Properties Of Triosephosphate Isomerase From Helicobacter Pylori Length = 233

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 15/170 (8%)
Query: 48  FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELN 107
           F GL+ +S    F +  QN + +  GAFTGEI+++ L  L+I  +++GHSERR +L E  
Sbjct: 42  FFGLLPNSFL-HFTLGVQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRTLLKESP 100
Query: 108 EFVGDKVAYALSQGLKVIACVGETLEQREAG--STMDVVAAQTKAIADRVSSWSNIVLAY 165
            F+ +K  +  S+  K++ C+GE L  RE G  +  + ++ Q + I     ++ N+V+AY
Sbjct: 101 SFLKEKFDFFKSKNFKIVYCIGEELTTREKGFKAVKEFLSEQLENID---LNYPNLVVAY 157
Query: 166 EPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           EP+WAIGT K A+       H  L++ L           T ++YGG S+N
Sbjct: 158 EPIWAIGTKKSASLEDIYLTHGFLKQIL--------NQKTPLLYGG-SVN 198

>pdb|3S6D|A Chain A, Crystal Structure Of A Putative Triosephosphate Isomerase From Coccidioides Immitis Length = 310

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Query: 58  PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYA 117
           P   + AQ+C+    G +TGEIS   L ++ +  V LGH+ERR I  E ++ V  K A A
Sbjct: 110 PPLLLGAQDCFWDSLGPYTGEISPVCLRDMNVSIVELGHAERRAIFGETDQQVARKAAAA 169
Query: 118 LSQGLKVIACVGE-----TLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIG 172
             QGL  + C+GE      +     G  +    AQ + + + +   + ++ AYEPVWAIG
Sbjct: 170 ADQGLIPLVCIGEVSTLGPIVSEAIGRAVGECEAQIRPVLEALPRDAPVIFAYEPVWAIG 229
Query: 173 TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
             + A       V   +R  ++           RI+YGG
Sbjct: 230 KPQPARVDHVGAVVSGIRS-VIERIDRHRKGEVRILYGG 267

>pdb|1W0M|A Chain A, Triosephosphate Isomerase From Thermoproteus Tenax Length = 226

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 49  LGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNE 108
           LGLV  S+     V AQ   V+ GGA T  +S E +       VIL HSE  L LN+L  
Sbjct: 48  LGLVSQSVD--IPVYAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLAR 105
Query: 109 FVGDKVAYALSQGLKVIAC 127
                VA A S GL V+ C
Sbjct: 106 L----VAKAKSLGLDVVVC 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
2i9e_A	259	Triosephosphate isomerase; 2.00A {Tenebrio molitor	1e-128
1mo0_A	275	TIM, triosephosphate isomerase; structural genomic	1e-127
1o5x_A	248	TIM, triosephosphate isomerase; 2- phosphoglycerat	1e-127
3th6_A	249	Triosephosphate isomerase; alpha/beta barrel, embr	1e-126
1r2r_A	248	TIM, triosephosphate isomerase; closed loop confor	1e-126
3krs_A	271	Triosephosphate isomerase; ssgcid, SBRI, emerald b	1e-124
2yc6_A	257	Triosephosphate isomerase; glycolysis; HET: PGA; 1	1e-124
3qst_A	255	Triosephosphate isomerase, putative; TIM barrel; 1	1e-122
2vxn_A	251	Triosephosphate isomerase; fatty acid biosynthesis	1e-122
2j27_A	250	Triosephosphate isomerase glycosomal; TIM, 2PG, LO	1e-120
1m6j_A	261	TIM, TPI, triosephosphate isomerase; asymmetry, mo	1e-119
1tre_A	255	Triosephosphate isomerase; intramolecular oxidored	1e-114
1b9b_A	255	TIM, protein (triosephosphate isomerase); thermoph	1e-112
2v5b_A	244	Triosephosphate isomerase; TIM, unfolding, monotct	1e-112
1ney_A	247	TIM, triosephosphate isomerase; yeast, DHAP, dihyd	1e-111
1aw2_A	256	Triosephosphate isomerase; psychrophilic, vibrio m	1e-103
3m9y_A	254	Triosephosphate isomerase; TIM barrel, glycolysis,	1e-102
2jgq_A	233	Triosephosphate isomerase; glycolysis, pentose shu	1e-100
3kxq_A	275	Triosephosphate isomerase; ssgcid, NIH, niaid, SBR	1e-97
2btm_A	252	TIM, protein (triosephosphate isomerase); thermoph	1e-96
3ta6_A	267	Triosephosphate isomerase; HET: FLC; 1.41A {Mycoba	5e-95
1yya_A	250	Triosephosphate isomerase; riken structural genomi	1e-94
4g1k_A	272	Triosephosphate isomerase; structural genomics, se	1e-93
3s6d_A	310	Putative triosephosphate isomerase; seattle struct	2e-89
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	8e-76
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	1e-69
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	3e-67
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} Length = 259

 Score =  360 bits (927), Expect = e-128
 Identities = 114/211 (54%), Positives = 146/211 (69%), Gaps = 2/211 (0%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           M RKF VGGNWK NG  +++ +I+  L  G +      EVVV  P ++L LV++ +    
Sbjct: 1   MARKFVVGGNWKMNGDKKQINEIIGFLKSGPLNQD--TEVVVGVPAIYLELVRTCVPASI 58

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            VAAQNC+    GAFTGEIS  M+ ++   WVILGHSERR I  E +E + +KV +AL  
Sbjct: 59  GVAAQNCYKVPKGAFTGEISPAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALES 118

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GLKVIAC+GETLE+REAG T +VV  QTKAIA +V+ WSN+V+AYEPVWAIGTGK ATP 
Sbjct: 119 GLKVIACIGETLEEREAGKTEEVVFRQTKAIAAKVNDWSNVVIAYEPVWAIGTGKTATPQ 178

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQ+VH  LR+W+  N   ++  + RI YGG
Sbjct: 179 QAQDVHKALRQWICENIDAKVGNSIRIQYGG 209

>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1 Length = 275

 Score =  360 bits (927), Expect = e-127
 Identities = 116/211 (54%), Positives = 142/211 (67%), Gaps = 2/211 (0%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           + RKFFVGGNWK NG    V  IV+ LN     SS  V+VVV+PP  +L   KS L+ G 
Sbjct: 21  LTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSS--VDVVVAPPAPYLAYAKSKLKAGV 78

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            VAAQNC+    GAFTGEIS  M+ +L + WVILGHSERR +  E +  + +K  +AL  
Sbjct: 79  LVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEA 138

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           G+KV+ C+GE LE+REAG T DV   Q +AI D+  SW NIV+AYEPVWAIGTGK A+  
Sbjct: 139 GIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGE 198

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQEVH  +R +L    SP +A ATRIIYGG
Sbjct: 199 QAQEVHEWIRAFLKEKVSPAVADATRIIYGG 229

>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A* Length = 248

 Score =  359 bits (924), Expect = e-127
 Identities = 91/211 (43%), Positives = 126/211 (59%), Gaps = 1/211 (0%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           M RK+FV  NWKCNGT E +K + +  N      S + +VVV P  V     +  L+  F
Sbjct: 1   MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKL-DVVVFPVSVHYDHTRKLLQSKF 59

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
               QN      G++TGE+SAE+  +L I +VI+GH ERR   +E +E V +K+  +L  
Sbjct: 60  STGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKN 119

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
            LK + C GE+LEQRE   T++V+  Q KA  D + ++ N++L YEP+WAIGTGK ATP 
Sbjct: 120 NLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPE 179

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QAQ VH E+RK +      + A   RI+YGG
Sbjct: 180 QAQLVHKEIRKIVKDTCGEKQANQIRILYGG 210

>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus} Length = 249

 Score =  356 bits (916), Expect = e-126
 Identities = 105/209 (50%), Positives = 137/209 (65%), Gaps = 2/209 (0%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
           R+F VGGNWK +G+   ++ I + L    +  +  VEV+V+ P  +L   +S L P   +
Sbjct: 4   RRFCVGGNWKMHGSKNSIRDICNTLKGASLDPN--VEVIVACPAPYLDYCRSLLPPSVAL 61

Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+  + GAFTGEIS  M+ +    WVILGHSERR +  E +  +G+K+ +AL  GL
Sbjct: 62  AAQNCYKVEQGAFTGEISPGMIKDCGGQWVILGHSERRHVFKEDDVLIGEKIKHALESGL 121

Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE LE REAG T +V   Q K IA  V  WS +V+AYEPVWAIGTGK ATP QA
Sbjct: 122 NVIACIGELLEDREAGRTEEVCFRQIKHIASNVKDWSKVVIAYEPVWAIGTGKTATPDQA 181

Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH ++R WL  N S ++A+  RI YGG
Sbjct: 182 QEVHSKVRNWLSTNVSADVASKVRIQYGG 210

>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ... Length = 248

 Score =  355 bits (913), Expect = e-126
 Identities = 118/209 (56%), Positives = 147/209 (70%), Gaps = 2/209 (0%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + ++++ LN  +VP+    EVV +PP  ++   +  L P   V
Sbjct: 4   RKFFVGGNWKMNGRKKNLGELITTLNAAKVPAD--TEVVCAPPTAYIDFARQKLDPKIAV 61

Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+ALS+GL
Sbjct: 62  AAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGL 121

Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct: 122 GVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 181

Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           QEVH +LR WL +N S  +A +TRIIYGG
Sbjct: 182 QEVHEKLRGWLKSNVSDAVAQSTRIIYGG 210

>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II} Length = 271

 Score =  353 bits (907), Expect = e-124
 Identities = 92/215 (42%), Positives = 133/215 (61%), Gaps = 7/215 (3%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR--- 57
           M RK+FVGGN+KCNGT E +K ++    + +  +    EV V P  + + LVK       
Sbjct: 22  MSRKYFVGGNFKCNGTKESLKTLIDSFKQVESSN---SEVYVFPTSLHISLVKEFFGNDH 78

Query: 58  -PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAY 116
              F + +QN      GAFTGE+S EML ++++   ++GHSERR   +E ++ V +KV  
Sbjct: 79  PGVFKIGSQNISCTGNGAFTGEVSCEMLKDMDVDCSLVGHSERRQYYSETDQIVNNKVKK 138

Query: 117 ALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKV 176
            L  GLK++ C+GE+L +RE G T DV+  Q       VS  SN+V+AYEP+WAIGTG V
Sbjct: 139 GLENGLKIVLCIGESLSERETGKTNDVIQKQLTEALKDVSDLSNLVIAYEPIWAIGTGVV 198

Query: 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           ATP QAQE H  +R+++    +P++++  RIIYGG
Sbjct: 199 ATPGQAQEAHAFIREYVTRMYNPQVSSNLRIIYGG 233

>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A Length = 257

 Score =  350 bits (901), Expect = e-124
 Identities = 96/215 (44%), Positives = 137/215 (63%), Gaps = 7/215 (3%)

Query: 2   GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSL-RPGF 60
            R+ F+GGN+KCNG+ + +K  V+ +   ++P S  V+VV++P  V L    ++      
Sbjct: 3   ARRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDS--VDVVIAPSAVHLSTAIAANTSKQL 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            +AAQN +++  GA+TGE S EML ++ +  VI+GHSERR I+ E +E    K   AL +
Sbjct: 61  RIAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEK 120

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS----SWSNIVLAYEPVWAIGTGKV 176
           G+ VI CVGETL++R+A  TM+V  AQ +A+   +      W  +V+AYEPVW+IGTG V
Sbjct: 121 GMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVV 180

Query: 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           ATP QA+EVH  LRKW +   + E A   RIIYGG
Sbjct: 181 ATPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGG 215

>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A Length = 255

 Score =  347 bits (894), Expect = e-122
 Identities = 100/212 (47%), Positives = 138/212 (65%), Gaps = 5/212 (2%)

Query: 3   RKFFVGGNWKCN-GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFH 61
           R FFVGGNWK N  T +E +K+V +LN  +V  +  VEVVV+ PFVFL  ++  LR  + 
Sbjct: 5   RTFFVGGNWKANPKTVQEAEKLVEMLNGAKVEGN--VEVVVAAPFVFLPTLQQKLRKDWK 62

Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           V+A+N + K  GAFTGE++  M+ +  I W ILGHSERR IL E +EF+  K  +AL  G
Sbjct: 63  VSAENVFTKPNGAFTGEVTVPMIKSFGIEWTILGHSERRDILKEDDEFLAAKAKFALENG 122

Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATP 179
           +K+I C GE L +REAG   + V+AQ + +   + +  W ++V+AYEP+WAIGTGKVA+ 
Sbjct: 123 MKIIYCCGEHLSEREAGKASEFVSAQIEKMIPAIPAGKWDDVVIAYEPIWAIGTGKVAST 182

Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
             AQE+   +R  L A    +IA   RI+YGG
Sbjct: 183 QDAQEMCKVIRDILAAKVGADIANKVRILYGG 214

>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A* Length = 251

 Score =  347 bits (893), Expect = e-122
 Identities = 110/214 (51%), Positives = 143/214 (66%), Gaps = 6/214 (2%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PG 59
              +     NWKCNGT   ++K+V V NE  +     V+ VV+P FV + LV++ LR P 
Sbjct: 3   AKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHD--VQCVVAPTFVHIPLVQAKLRNPK 60

Query: 60  FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
           + ++AQN   K G AFTGE+S  +L ++ + WVILGHSERR    E +E V  KV+ A  
Sbjct: 61  YVISAQNAIAKSG-AFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACK 119

Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVA 177
           QG  VIAC+GETL+QREA  T  VV +QT AIA +++  +W+ +VLAYEPVWAIGTGKVA
Sbjct: 120 QGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVA 179

Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           TP QAQEVH  LRKW+  N   ++AA  RI+YGG
Sbjct: 180 TPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGG 213

>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ... Length = 250

 Score =  342 bits (879), Expect = e-120
 Identities = 96/212 (45%), Positives = 132/212 (62%), Gaps = 6/212 (2%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFH 61
            +     NWKCNG+ + + +++ + N   +     V+ VV+  FV L + K  L  P F 
Sbjct: 4   PQPIAAANWKCNGSQQSLSELIDLFNSTSINHD--VQCVVASTFVHLAMTKERLSHPKFV 61

Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           +AAQN   K G AFTGE+S  +L +  + W++LGHSERR    E NE V DKVA A++ G
Sbjct: 62  IAAQNAIAKSG-AFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASG 120

Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATP 179
             VIAC+GETL++RE+G T  VV  Q  AIA ++    W+ +V+AYE VWAIGTGKVATP
Sbjct: 121 FMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEAVWAIGTGKVATP 180

Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
            QAQE H  +R W+ +    ++A   RI+YGG
Sbjct: 181 QQAQEAHALIRSWVSSKIGADVAGELRILYGG 212

>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1 Length = 261

 Score =  340 bits (874), Expect = e-119
 Identities = 115/220 (52%), Positives = 145/220 (65%), Gaps = 10/220 (4%)

Query: 1   MG-RKFFVGGNWKCNGTPEEVKKIVSVLNEG-QVPSSDVVEVVVSPPFVFLGLVKSSLR- 57
           MG  KF VGGNWKCNGT   ++ +   +        +  VEV+V  PF+++  V+  L  
Sbjct: 1   MGAGKFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAG 60

Query: 58  ----PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDK 113
                   V+A+N W K G A+TGE+   MLV+ ++P+VILGHSERR I +E NE V +K
Sbjct: 61  EANGANILVSAENAWTKSG-AYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEK 119

Query: 114 VAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAI 171
           V  A+  GLKVIAC+GET  QR A  T +VVAAQ KAI + +S  +W NI+LAYEPVWAI
Sbjct: 120 VKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAI 179

Query: 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           GTGK ATP QAQEVH  +RKW+  N S E+A ATRI YGG
Sbjct: 180 GTGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGG 219

>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A Length = 255

 Score =  327 bits (840), Expect = e-114
 Identities = 85/212 (40%), Positives = 115/212 (54%), Gaps = 5/212 (2%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFH 61
           R   V GNWK NG+   V ++VS L +  +       V ++PP +++ + K         
Sbjct: 2   RHPLVMGNWKLNGSRHMVHELVSNLRKE-LAGVAGCAVAIAPPEMYIDMAKREAEGSHIM 60

Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    E +E +  K A    QG
Sbjct: 61  LGAQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQG 120

Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATP 179
           L  + C+GET  + EAG T +V A Q  A+       ++   V+AYEPVWAIGTGK ATP
Sbjct: 121 LTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATP 180

Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           AQAQ VH  +R   +A     IA    I YGG
Sbjct: 181 AQAQAVHKFIRDH-IAKVDANIAEQVIIQYGG 211

>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1 Length = 255

 Score =  321 bits (826), Expect = e-112
 Identities = 98/214 (45%), Positives = 124/214 (57%), Gaps = 4/214 (1%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-G 59
           + RK  + GNWK + T  E KK VS+L    +      E+VV PPF  L  V   L    
Sbjct: 1   ITRKLILAGNWKMHKTISEAKKFVSLLVNE-LHDVKEFEIVVCPPFTALSEVGEILSGRN 59

Query: 60  FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
             + AQN + +  GAFTGEIS  ML  + + +VI+GHSERR I  E +EF+  KV   L 
Sbjct: 60  IKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLE 119

Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVA 177
           +G+  I CVGETLE+RE G T  VV  Q +     +       +V+AYEPVWAIGTG+VA
Sbjct: 120 KGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVA 179

Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           TP QAQEVH  +RK L      E A + RI+YGG
Sbjct: 180 TPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGG 213

>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} Length = 244

 Score =  319 bits (821), Expect = e-112
 Identities = 97/214 (45%), Positives = 126/214 (58%), Gaps = 13/214 (6%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PG 59
              +     NWKCNG+   +  ++  LN         V+ VV+P F+ + + K+ L  P 
Sbjct: 3   SKPQPIAAANWKCNGSESLLVPLIETLNAATFDHD--VQCVVAPTFLHIPMTKARLTNPK 60

Query: 60  FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
           F +AAQN             +   L +  I WV+LGHSERRL   E NE V +KVA A +
Sbjct: 61  FQIAAQNAG--------NADALASLKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACA 112

Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVA 177
            G  VI CVGET E+REAG T  VV  Q  A+A ++S  +WS +V+AYEPVWAIGTGKVA
Sbjct: 113 AGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVA 172

Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           TP QAQEVH  LR+W+ +    +IAA  RI+YGG
Sbjct: 173 TPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGG 206

>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A* Length = 247

 Score =  319 bits (819), Expect = e-111
 Identities = 98/211 (46%), Positives = 141/211 (66%), Gaps = 3/211 (1%)

Query: 2   GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGF 60
            R FFVGGN+K NG+ + +K+IV  LN   +P +  VEVV+ PP  +L    S ++ P  
Sbjct: 1   ARTFFVGGNFKLNGSKQSIKEIVERLNTASIPEN--VEVVICPPATYLDYSVSLVKKPQV 58

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            V AQN ++K  GAFTGE S + + ++   +VILGHSERR   +E ++F+ DK  +AL Q
Sbjct: 59  TVGAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQ 118

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           G+ VI C+GETLE+++AG T+DVV  Q  A+ + V  ++N+V+AYEPV AIGTG  ATP 
Sbjct: 119 GVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVXAIGTGLAATPE 178

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
            AQ++H  +RK+L +    + A+  RI+YGG
Sbjct: 179 DAQDIHASIRKFLASKLGDKAASELRILYGG 209

>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A Length = 256

 Score =  299 bits (769), Expect = e-103
 Identities = 83/214 (38%), Positives = 116/214 (54%), Gaps = 7/214 (3%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP---G 59
           R   V GNWK NG+ E V  +++ LN   +     V+V V+PP +F+ L + +L      
Sbjct: 2   RHPVVMGNWKLNGSKEMVVDLLNGLNAE-LEGVTGVDVAVAPPALFVDLAERTLTEAGSA 60

Query: 60  FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
             + AQN  +   GAFTG++S  ML       +I+GHSERR    E +EFV  K A+   
Sbjct: 61  IILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKE 120

Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVA 177
            GL  + C+GE+  Q EAG TM V A Q  A+ +     +    ++AYEP+WAIGTGK A
Sbjct: 121 NGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAA 180

Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           T   AQ +H ++R   +A  S  +A    I YGG
Sbjct: 181 TAEDAQRIHAQIRAH-IAEKSEAVAKNVVIQYGG 213

>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} Length = 254

 Score =  296 bits (760), Expect = e-102
 Identities = 83/215 (38%), Positives = 122/215 (56%), Gaps = 8/215 (3%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPG--- 59
           R   + GNWK N T +E K  V+ L    +P S  VE V+  P + L  + ++++ G   
Sbjct: 3   RTPIIAGNWKMNKTVQEAKDFVNALPT--LPDSKEVESVICAPAIQLDALTTAVKEGKAQ 60

Query: 60  -FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYAL 118
              + AQN + +  GAFTGE S   L +L + +V++GHSERR + +E +E +  K     
Sbjct: 61  GLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIF 120

Query: 119 SQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKV 176
             G+  I CVGET E+RE+G   DVV  Q K     +S     ++V+AYEP+WAIGTGK 
Sbjct: 121 KHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKS 180

Query: 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           +T   A E+   +R+ +   +S E++ ATRI YGG
Sbjct: 181 STSEDANEMCAFVRQTIADLSSKEVSEATRIQYGG 215

>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori} Length = 233

 Score =  291 bits (747), Expect = e-100
 Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 17/208 (8%)

Query: 6   FVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQ 65
               N+K      +    +  L +  +       V V P F  L          F +  Q
Sbjct: 3   IAMANFKSAMPIFKSHAYLKELEKT-LKPQHFDRVFVFPDFFGLLPNSFL---HFTLGVQ 58

Query: 66  NCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI 125
           N + +  GAFTGEI+++ L  L+I  +++GHSERR +L E   F+ +K  +  S+  K++
Sbjct: 59  NAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRTLLKESPSFLKEKFDFFKSKNFKIV 118

Query: 126 ACVGETLEQREAGS--TMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
            C+GE L  RE G     + ++ Q + I     ++ N+V+AYEP+WAIGT K A+     
Sbjct: 119 YCIGEELTTREKGFKAVKEFLSEQLENID---LNYPNLVVAYEPIWAIGTKKSASLEDIY 175

Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGG 211
             H  L++         +   T ++YGG
Sbjct: 176 LTHGFLKQI--------LNQKTPLLYGG 195

>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae} Length = 275

 Score =  284 bits (730), Expect = 1e-97
 Identities = 73/210 (34%), Positives = 107/210 (50%), Gaps = 2/210 (0%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFH 61
            + F+ GNWK NGT E + ++ ++          + E ++  P   L      L      
Sbjct: 26  IRPFIAGNWKMNGTGESLGELRAIAAGISSDLGRLFEALICVPATLLSRAFDILGGENIL 85

Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           +  QNC     G +TG+ISA ML       VI+GHSERR +  E +  V  KV  A   G
Sbjct: 86  LGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWRAG 145

Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQ 181
           L  + CVGETLE+R++   +DV+  Q +      ++  NI++AYEPVWA+GTG  AT A 
Sbjct: 146 LVALICVGETLEERKSNKVLDVLTRQLEGSLPDGATAENIIIAYEPVWAVGTGNTATSAD 205

Query: 182 AQEVHFELRKWLLANTSPEIAAATRIIYGG 211
             EVH  +    + +   +  A  R++YGG
Sbjct: 206 VAEVHAFIHHK-MHSRFGDEGAKIRLLYGG 234

>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A Length = 252

 Score =  281 bits (722), Expect = 1e-96
 Identities = 90/212 (42%), Positives = 118/212 (55%), Gaps = 4/212 (1%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-GFH 61
           RK  + GNWK NGT  E  + V  +    VP +D V  VV  PF+FL  +  +       
Sbjct: 1   RKPIIAGNWKMNGTLAEAVQFVEDVKG-HVPPADEVISVVCAPFLFLDRLVQAADGTDLK 59

Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           + AQ       GA+TGE+S  ML +L + +VILGHSERR +  E +E V  KV  A ++G
Sbjct: 60  IGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRG 119

Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATP 179
           L  I C GE+LE+REAG T  VVA+Q +     ++       V+AYEP+WAIGTGK +TP
Sbjct: 120 LIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTP 179

Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
             A  V   +R  +     PE A A RI YGG
Sbjct: 180 EDANSVCGHIRSVVSRLFGPEAAEAIRIQYGG 211

>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} PDB: 3tao_A* 3gvg_A Length = 267

 Score =  278 bits (713), Expect = 5e-95
 Identities = 84/217 (38%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEG-QVPSSDVVEVVVSPPFVFLGLVKSSL--- 56
           M RK  + GNWK N    E   +V  +         D V+V V PPF  L  V++ +   
Sbjct: 1   MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGD 60

Query: 57  RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAY 116
           +      AQ+      GA+TG++S   L  L   +V++GHSERR   NE +  V  K A 
Sbjct: 61  KLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAAT 120

Query: 117 ALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTG 174
           AL  GL  I C+GE L+ REAG+ +     Q +     + +    ++V+AYEPVWAIGTG
Sbjct: 121 ALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTG 180

Query: 175 KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
           +VA+ A AQEV   +RK L +  SP IA   R++YGG
Sbjct: 181 RVASAADAQEVCAAIRKELASLASPRIADTVRVLYGG 217

>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus} Length = 250

 Score =  276 bits (709), Expect = 1e-94
 Identities = 82/212 (38%), Positives = 108/212 (50%), Gaps = 5/212 (2%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-GFH 61
           R+  V GNWK + TP E +   + L    +P     E  V P F  L + K  L      
Sbjct: 2   RRVLVAGNWKMHKTPSEARVWFAELKRL-LPPLQS-EAAVLPAFPILPVAKEVLAETQVG 59

Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
             AQ+    K GA+TGE+SA ML +L   + I+GHSERR    E +  V +K    L +G
Sbjct: 60  YGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEG 119

Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATP 179
           +  I CVGE LE RE G  +     Q +   + V       +V+AYEPVWAIGTGK ATP
Sbjct: 120 ITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATP 179

Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
             A+ +H  +RK L        A+  RI+YGG
Sbjct: 180 EDAEAMHQAIRKALSERYGEAFASRVRILYGG 211

>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis} Length = 272

 Score =  275 bits (705), Expect = 1e-93
 Identities = 85/212 (40%), Positives = 118/212 (55%), Gaps = 7/212 (3%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFH 61
           R   V GNWK +G     + +++ + +G     D V + V  PF +L   ++ L+     
Sbjct: 26  RIKRVIGNWKMHGRLSGNQALLTEVAQGAQAVHDNVAIGVCVPFPYLAQAQAQLQGGRVS 85

Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
             +Q+    + GA+TGE++A M+      + I+GHSERR    E NE V  K   AL+ G
Sbjct: 86  WGSQDVSAHEQGAYTGEVAAGMVAEFGAAYAIVGHSERRAYHGESNETVAAKARRALAAG 145

Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATP 179
           L  I CVGETL +REAG+T  VV AQ  A+   +S    + IV+AYEPVWAIGTGK AT 
Sbjct: 146 LTPIVCVGETLAEREAGTTEQVVGAQLDAVLAVLSPDEAARIVVAYEPVWAIGTGKSATA 205

Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
            QAQ+VH  LR  L    + + A    ++YGG
Sbjct: 206 EQAQQVHAFLRGRL----AAKGAGHVSLLYGG 233

>3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS} Length = 310

 Score =  265 bits (679), Expect = 2e-89
 Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 26/234 (11%)

Query: 3   RKFFVGGNWKCNGTPEE----VKKIVSVLNEGQVP-SSDVVEVVVSPPFVFLGLVKSSLR 57
            K  +  + K   TP      ++ ++   N+     +   + + + P F+ +     +++
Sbjct: 35  PKTLLIISLKMYFTPSRTIDYIQGLLEPRNDIIRQENRSRLLLALIPDFLTIYPCSEAIK 94

Query: 58  P---------------GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLI 102
                              + AQ+C+    G +TGEIS   L ++ +  V LGH+ERR I
Sbjct: 95  EFESNLAAPQDADTPPPLLLGAQDCFWDSLGPYTGEISPVCLRDMNVSIVELGHAERRAI 154

Query: 103 LNELNEFVGDKVAYALSQGLKVIACVGET-----LEQREAGSTMDVVAAQTKAIADRVSS 157
             E ++ V  K A A  QGL  + C+GE      +     G  +    AQ + + + +  
Sbjct: 155 FGETDQQVARKAAAAADQGLIPLVCIGEVSTLGPIVSEAIGRAVGECEAQIRPVLEALPR 214

Query: 158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
            + ++ AYEPVWAIG  + A       V   +R   +           RI+YGG
Sbjct: 215 DAPVIFAYEPVWAIGKPQPARVDHVGAVVSGIRSV-IERIDRHRKGEVRILYGG 267

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 Length = 226

 Score =  227 bits (582), Expect = 8e-76
 Identities = 52/213 (24%), Positives = 76/213 (35%), Gaps = 31/213 (14%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
           R   +  N+K  G     + +       +      V +VV+P  + LGLV  S+     V
Sbjct: 2   RLPILIINFKAYGEAAGKRAVELAKAAERAARELGVNIVVAPNHLELGLVSQSV--DIPV 59

Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
            AQ   V+ GGA T  +S E +       VIL HSE  L LN+L       VA A S GL
Sbjct: 60  YAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLAR----LVAKAKSLGL 115

Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            V+ C  +      A                   +     +A EP   IGTG+  +  + 
Sbjct: 116 DVVVCAPDPRTSLAAA------------------ALGPHAVAVEPPELIGTGRAVSRYKP 157

Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           + +   +                 +I G   I 
Sbjct: 158 EAIVETVGL------VSRHFPEVSVITGA-GIE 183

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} Length = 219

 Score =  211 bits (540), Expect = 1e-69
 Identities = 41/209 (19%), Positives = 78/209 (37%), Gaps = 31/209 (14%)

Query: 7   VGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQN 66
           +  N+K        + +       +V     + + V+P FV L ++  ++     V AQ+
Sbjct: 3   IVINYKTYNESIGNRGLEIAKIAEKVSEESGITIGVAPQFVDLRMIVENV--NIPVYAQH 60

Query: 67  CWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA 126
                 G+ TG I AE + +      ++ HSE+R++L ++       +    + GL+ I 
Sbjct: 61  IDNINPGSHTGHILAEAIKDCGCKGTLINHSEKRMLLADIEA----VINKCKNLGLETIV 116

Query: 127 CVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
           C       +                    ++ S   +A EP   IGTG   + A  + V 
Sbjct: 117 CTNNINTSKAV------------------AALSPDCIAVEPPELIGTGIPVSKANPEVVE 158

Query: 187 FELRKWLLANTSPEIAAATRIIYGGISIN 215
             +R         EI    +++ G   I+
Sbjct: 159 GTVRAV------KEINKDVKVLCGA-GIS 180

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 Length = 225

 Score =  205 bits (525), Expect = 3e-67
 Identities = 41/215 (19%), Positives = 77/215 (35%), Gaps = 35/215 (16%)

Query: 3   RKFFVGGNWKCNGTP--EEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           ++  +  N+K       +   +I     +  V     V +VV+P  V L ++  S+    
Sbjct: 5   KEPIIAINFKTYIEATGKRALEIAKAAEK--VYKETGVTIVVAPQLVDLRMIAESV--EI 60

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            V AQ+    K G+ TG +  E +        +L HSE R+IL +L       +  A   
Sbjct: 61  PVFAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEA----AIRRAEEV 116

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           GL  + C                            ++ +   +A EP   IGTG   + A
Sbjct: 117 GLMTMVCSNNPAVSAAV------------------AALNPDYVAVEPPELIGTGIPVSKA 158

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           + + +   +          ++    +++ G   I+
Sbjct: 159 KPEVITNTVEL------VKKVNPEVKVLCGA-GIS 186

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 53/210 (25%)

Query: 17  PEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVF--LGLVKSSL------------RPGFHV 62
            +   K+   L E + P+ +V+        +   LG  K+ +            +  F +
Sbjct: 134 LQPYLKLRQALLELR-PAKNVL--------IDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 63  AAQNCWVKKGGAFTGEISAEMLVNL----EIPWVILGHSERRLILN------ELNEFVGD 112
                W+      + E   EML  L    +  W         + L       EL   +  
Sbjct: 185 F----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 113 KVAYALSQGLKVIACV--GETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWA 170
           K  Y     L V+  V   +          + ++  + K + D +S+ +   ++ +    
Sbjct: 241 KP-YE--NCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHH-- 294

Query: 171 IGTGKVATPAQAQEVHFELRKWLLANTSPE 200
                  TP + + +   L K+L  +  P+
Sbjct: 295 ---SMTLTPDEVKSL---LLKYL--DCRPQ 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
1o5x_A	248	TIM, triosephosphate isomerase; 2- phosphoglycerat	100.0
3ta6_A	267	Triosephosphate isomerase; HET: FLC; 1.41A {Mycoba	100.0
3th6_A	249	Triosephosphate isomerase; alpha/beta barrel, embr	100.0
1r2r_A	248	TIM, triosephosphate isomerase; closed loop confor	100.0
2i9e_A	259	Triosephosphate isomerase; 2.00A {Tenebrio molitor	100.0
4g1k_A	272	Triosephosphate isomerase; structural genomics, se	100.0
1b9b_A	255	TIM, protein (triosephosphate isomerase); thermoph	100.0
3krs_A	271	Triosephosphate isomerase; ssgcid, SBRI, emerald b	100.0
1ney_A	247	TIM, triosephosphate isomerase; yeast, DHAP, dihyd	100.0
2j27_A	250	Triosephosphate isomerase glycosomal; TIM, 2PG, LO	100.0
3kxq_A	275	Triosephosphate isomerase; ssgcid, NIH, niaid, SBR	100.0
3qst_A	255	Triosephosphate isomerase, putative; TIM barrel; 1	100.0
2vxn_A	251	Triosephosphate isomerase; fatty acid biosynthesis	100.0
1yya_A	250	Triosephosphate isomerase; riken structural genomi	100.0
3m9y_A	254	Triosephosphate isomerase; TIM barrel, glycolysis,	100.0
1mo0_A	275	TIM, triosephosphate isomerase; structural genomic	100.0
2yc6_A	257	Triosephosphate isomerase; glycolysis; HET: PGA; 1	100.0
1tre_A	255	Triosephosphate isomerase; intramolecular oxidored	100.0
2btm_A	252	TIM, protein (triosephosphate isomerase); thermoph	100.0
1m6j_A	261	TIM, TPI, triosephosphate isomerase; asymmetry, mo	100.0
1aw2_A	256	Triosephosphate isomerase; psychrophilic, vibrio m	100.0
3s6d_A	310	Putative triosephosphate isomerase; seattle struct	100.0
2v5b_A	244	Triosephosphate isomerase; TIM, unfolding, monotct	100.0
2jgq_A	233	Triosephosphate isomerase; glycolysis, pentose shu	100.0
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	100.0
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	100.0
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	100.0
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	99.29
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	96.83
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	96.79
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	96.67
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	96.09
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	95.78
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	95.68
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	95.5
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	95.38
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	95.25
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	95.18
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	95.14
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	95.09
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	95.06
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	94.81
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	94.66
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	94.62
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	94.53
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	94.04
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	93.99
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	93.83
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	93.54
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	93.41
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	93.17
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	93.12
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	91.92
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	91.66
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	90.91
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	88.97
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	88.53
3txv_A	450	Probable tagatose 6-phosphate kinase; structural g	87.74
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	86.18
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	85.74
2whl_A	294	Beta-mannanase, baman5; glycoside hydrolase, hydro	83.48
1ece_A	358	Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.	83.0
3jug_A	345	Beta-mannanase; TIM-barrel, glycosidase, hydrolase	81.72
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	81.24
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	80.08

>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*

Probab=100.00  E-value=1.8e-89  Score=605.49  Aligned_cols=222  Identities=41%  Similarity=0.675  Sum_probs=209.0

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccC
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      |||||||+||||||++.+++.+|++.+.... +...+++++|||||++|..+.+.+.++|.+||||||+.++||||||||
T Consensus         1 mmr~~~i~gNwKmn~~~~~~~~l~~~l~~~~-~~~~~vev~v~Pp~~~L~~v~~~~~~~i~vgAQn~~~~~~GA~TGEiS   79 (248)
T 1o5x_A            1 MARKYFVAANWKCNGTLESIKSLTNSFNNLD-FDPSKLDVVVFPVSVHYDHTRKLLQSKFSTGIQNVSKFGNGSYTGEVS   79 (248)
T ss_dssp             --CCEEEEEECCBCCCHHHHHHHHHHHHTSC-CCTTTEEEEEECCGGGHHHHHHHSCTTSEEEESCCCSSCSBSCTTCCC
T ss_pred             CCCCCEEEEecCcccCHHHHHHHHHHHHhhc-ccccCceEEEeCcHHHHHHHHHHhccCCeEEeccCCCCCCCCcCCcCC
Confidence            8999999999999999999999999997633 222469999999999999998877667999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.+++.+||+..+++++++++
T Consensus        80 ~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~  159 (248)
T 1o5x_A           80 AEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDN  159 (248)
T ss_dssp             HHHHHHTTCCEEEECCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHTTGGGCCCTTS
T ss_pred             HHHHHHcCCCEEEeCChhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCChHHHHHHHHHHHHhhhhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988866899


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      ++||||||||||||++||||++|++|++||++|+++||.++++++|||||| ||||+|+.+++.
T Consensus       160 ~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGG-SV~~~N~~~l~~  222 (248)
T 1o5x_A          160 VILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGG-SVNTENCSSLIQ  222 (248)
T ss_dssp             EEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECS-CCCTTTHHHHHT
T ss_pred             EEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcC-CCCHHHHHHHHc
Confidence            999999999999999999999999999999999999998888899999999 999999999983

>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A

Probab=100.00  E-value=1.5e-89  Score=611.09  Aligned_cols=223  Identities=39%  Similarity=0.578  Sum_probs=207.9

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCC-CCCceEEEcCccccHHHHHHhcC-C--CcEEeeeccccccCcCcc
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPS-SDVVEVVVSPPFVFLGLVKSSLR-P--GFHVAAQNCWVKKGGAFT   76 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~-~~~~~v~i~Pp~~~L~~~~~~~~-~--~i~igAQnv~~~~~GA~T   76 (237)
                      |+|||||+||||||++.+++.+|++.+....... ..+++|+|||||++|..+.+.+. +  +|.+||||||+.++||||
T Consensus         1 m~rk~~i~gNWKMn~~~~~~~~l~~~l~~~~~~~~~~~vev~v~Pp~~~L~~v~~~~~~~~~~i~vgAQn~~~~~~GAfT   80 (267)
T 3ta6_A            1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYT   80 (267)
T ss_dssp             --CCCEEEEECCBCCCHHHHHHHHHHHHHHSCGGGGGTCEEEEECCGGGHHHHHHHHHHTTCSCEEEESCCCSSSSBSCT
T ss_pred             CCCCcEEEEEhhhccCHHHHHHHHHHHHHhccccccCCceEEEECCHHHHHHHHHHhcCCCCceEEEecccCCCCCCCcc
Confidence            7899999999999999999999999987643221 12689999999999999998876 3  499999999999999999


Q ss_pred             cccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC
Q 026522           77 GEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS  156 (237)
Q Consensus        77 GeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~  156 (237)
                      |||||+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.++|.+||+..|+.++
T Consensus        81 GEIS~~mLkd~G~~~ViiGHSERR~~f~Etde~V~~Kv~~Al~~GL~pIlCvGEtleeReag~t~~vv~~Ql~~~l~~l~  160 (267)
T 3ta6_A           81 GDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLL  160 (267)
T ss_dssp             TCCCHHHHHHTTCCEEEESCHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHTTTCC
T ss_pred             CcccHHHHHHcCCCEEEEcchhhccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999885


Q ss_pred             --CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          157 --SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       157 --~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                        ++++++||||||||||||++||||++|++|++||++|+++|+.++++++|||||| ||||+|+.+|+.
T Consensus       161 ~~~~~~vvIAYEPVWAIGTG~tAtpe~aqevh~~IR~~l~~~~~~~~a~~~rIlYGG-SV~~~N~~el~~  229 (267)
T 3ta6_A          161 AEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGG-SVNAKNVGDIVA  229 (267)
T ss_dssp             HHHHTTCEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSCEEECS-CCCTTTHHHHHT
T ss_pred             HHHhCCEEEEECChhhhcCCcCCCHHHHHHHHHHHHHHHHHhhChhhhccceEEEcC-CcCHhHHHHHhc
Confidence              4789999999999999999999999999999999999999998889999999999 999999999874

>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus}

Probab=100.00  E-value=3.8e-89  Score=603.74  Aligned_cols=221  Identities=49%  Similarity=0.816  Sum_probs=206.5

Q ss_pred             CC-CcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCccccc
Q 026522            1 MG-RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEI   79 (237)
Q Consensus         1 m~-r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGei   79 (237)
                      || |||||+||||||++.+++.+|++.+.....  ..+++++|||||++|..+.+.+.++|.+||||||+.++|||||||
T Consensus         1 mm~r~~~i~gNwKmn~~~~~~~~~~~~l~~~~~--~~~vev~v~Pp~~~L~~v~~~~~~~i~vgAQn~~~~~~GA~TGEi   78 (249)
T 3th6_A            1 MAARRFCVGGNWKMHGSKNSIRDICNTLKGASL--DPNVEVIVACPAPYLDYCRSLLPPSVALAAQNCYKVEQGAFTGEI   78 (249)
T ss_dssp             --CCCCEEEEECCBCCCHHHHHHHHHHHHTSCC--CTTSEEEEEECGGGHHHHHHHSCTTEEEEESCCCSSSSBSCTTCC
T ss_pred             CCCCCeEEEEEhhhccCHHHHHHHHHHHHhhcc--cCCceEEEeCcHHHHHHHHHHhccCCEEEeeecCCccCCCccccc
Confidence            55 899999999999999999999999876432  247999999999999999988777899999999999999999999


Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      ||+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|+|.+++.+||+.+++.+++++
T Consensus        79 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~  158 (249)
T 3th6_A           79 SPGMIKDCGGQWVILGHSERRHVFKEDDVLIGEKIKHALESGLNVIACIGELLEDREAGRTEEVCFRQIKHIASNVKDWS  158 (249)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHTTTCHHHHHHHHHHHHHTTCSCGG
T ss_pred             CHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhchhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887788


Q ss_pred             CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      +++||||||||||||++|||+++|++|++||++|+++|+.++++++|||||| ||||+|+.+++.
T Consensus       159 ~~vIAYEPvWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~vrIlYGG-SV~~~N~~~l~~  222 (249)
T 3th6_A          159 KVVIAYEPVWAIGTGKTATPDQAQEVHSKVRNWLSTNVSADVASKVRIQYGG-SVNAGNCKELGR  222 (249)
T ss_dssp             GEEEEECCTTTCCC---CCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECS-CCCTTTHHHHHT
T ss_pred             CEEEEECCcchhcCCCCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcC-ccCHhHHHHHhc
Confidence            9999999999999999999999999999999999999998889999999999 999999999874

>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...

Probab=100.00  E-value=8.6e-89  Score=601.18  Aligned_cols=229  Identities=52%  Similarity=0.862  Sum_probs=213.5

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccC
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      |||||||+||||||++.+++.+|++.+.....+  .+++++|||||++|..+.+.+...|.+||||||+.++||||||||
T Consensus         2 ~mr~~~i~gNwKmn~~~~~~~~l~~~l~~~~~~--~~vev~v~Pp~~~L~~v~~~~~~~i~vgAQn~~~~~~GA~TGEiS   79 (248)
T 1r2r_A            2 PSRKFFVGGNWKMNGRKKNLGELITTLNAAKVP--ADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEIS   79 (248)
T ss_dssp             -CCCEEEEEECCBCCCHHHHHHHHHHHHHSCCC--TTEEEEEECCGGGHHHHHHHSCTTSEEEESCCCSSSSBSCTTCCC
T ss_pred             CCCCCEEEEeCCcccCHHHHHHHHHHHHhhccc--cCceEEEeCcHHHHHHHHHHhhCCceEEeccCCCCCCCCccCccC
Confidence            679999999999999999999999999764322  469999999999999999888733999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.+++.+||+.+|++++++++
T Consensus        80 ~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~  159 (248)
T 1r2r_A           80 PGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSK  159 (248)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHTCSCGGG
T ss_pred             HHHHHHcCCCEEEECChhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhCCChHHHHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998866889


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH--------Hcccccchh
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL--------LLSFGCFYN  232 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~--------~~~~~~~~~  232 (237)
                      ++||||||||||||++||||++|++|++||++|+++|+.++++++|||||| ||||+|+.+++        ++|-+-+.+
T Consensus       160 ~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGG-SV~~~N~~~l~~~~diDG~LVGgAsL~a  238 (248)
T 1r2r_A          160 VVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGG-SVTGATCKELASQPDVDGFLVGGASLKP  238 (248)
T ss_dssp             EEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECS-CCCTTTHHHHHTSTTCCEEEESGGGGST
T ss_pred             eEEEEecHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcC-CcCHhHHHHHHcCCCCCeeEechHHhCh
Confidence            999999999999999999999999999999999999998888899999999 99999999998        666554443

>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}

Probab=100.00  E-value=9.2e-89  Score=603.78  Aligned_cols=229  Identities=51%  Similarity=0.849  Sum_probs=214.2

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccC
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      |||||||+||||||++.+++.+|++.+.....+  .+++++|||||++|..+.+.+..+|.+||||||+.++||||||||
T Consensus         1 m~r~~~i~gNwKmn~~~~~~~~l~~~l~~~~~~--~~vev~v~Pp~~~L~~v~~~~~~~i~vgAQn~~~~~~GA~TGEiS   78 (259)
T 2i9e_A            1 MARKFVVGGNWKMNGDKKQINEIIGFLKSGPLN--QDTEVVVGVPAIYLELVRTCVPASIGVAAQNCYKVPKGAFTGEIS   78 (259)
T ss_dssp             -CCCEEEEEECCBCCCHHHHHHHHHHHHHSCCC--TTEEEEEEECGGGHHHHHHHSCTTSEEEESCCCSSSSBSCTTCCC
T ss_pred             CCCCcEEEEecccccCHHHHHHHHHHHhhhccc--CCeeEEEeCCHHHHHHHHHHhhCCCeEEeccCCCCCCCCccCccC
Confidence            889999999999999999999999998763322  569999999999999999887656999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||+++||++|+|.++|.+|++.++++++++++
T Consensus        79 ~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pIvCvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~  158 (259)
T 2i9e_A           79 PAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALESGLKVIACIGETLEEREAGKTEEVVFRQTKAIAAKVNDWSN  158 (259)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHCSCCTT
T ss_pred             HHHHHHcCCCEEEECchhhhhhcCCCHHHHHHHHHHHHHCCCeEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcchhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988866899


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH--------Hcccccchh
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL--------LLSFGCFYN  232 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~--------~~~~~~~~~  232 (237)
                      ++||||||||||||++||||++|++|++||++|+++|+.++++++|||||| ||||+|+.+++        ++|-+-+++
T Consensus       159 ~vIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGG-SV~~~N~~~l~~~~diDG~LVGgAsL~a  237 (259)
T 2i9e_A          159 VVIAYEPVWAIGTGKTATPQQAQDVHKALRQWICENIDAKVGNSIRIQYGG-SVTAANCKELASQPDIDGFLVGGASLKP  237 (259)
T ss_dssp             EEEEECCGGGTTSSSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEECS-CCCTTTHHHHHTSTTCCEEEESGGGGST
T ss_pred             EEEEEcCHHHcCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcC-CCCHhhHHHHhcCCCCCeeeechHhhCh
Confidence            999999999999999999999999999999999999998888899999999 99999999998        666555443

>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis}

Probab=100.00  E-value=9.3e-89  Score=607.15  Aligned_cols=219  Identities=40%  Similarity=0.572  Sum_probs=205.9

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      ||||||+||||||++.+++.+|++.+.........+++|+|||||++|..+.+.+. ++|.+||||||+.++||||||||
T Consensus        25 Mrk~~i~gNWKMn~t~~~~~~l~~~l~~~~~~~~~~veVvV~PP~~~L~~v~~~~~~~~i~vgAQN~~~~~~GAfTGEIS  104 (272)
T 4g1k_A           25 QRIKRVIGNWKMHGRLSGNQALLTEVAQGAQAVHDNVAIGVCVPFPYLAQAQAQLQGGRVSWGSQDVSAHEQGAYTGEVA  104 (272)
T ss_dssp             CCCEEEEEECCBCCCHHHHHHHHHHHHHHHTTSCTTEEEEEECCGGGHHHHHHHHTTSSEEEEESCCCSSSSBSCTTCCC
T ss_pred             CCCCEEEEEhhhCcCHHHHHHHHHHHHhccccccCCceEEEeCCHHHHHHHHHHhcCCCceEEecccCCCCCCCCcCcCC
Confidence            69999999999999999999999998764311224799999999999999999887 78999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SW  158 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~  158 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+|||||+++|++|+|.++|.+||+.+|+.++  ++
T Consensus       105 a~MLkd~G~~~VIiGHSERR~~fgEtde~V~~K~~~Al~~GL~pIlCVGEtleeReag~t~~vv~~Ql~~~l~~~~~~~~  184 (272)
T 4g1k_A          105 AGMVAEFGAAYAIVGHSERRAYHGESNETVAAKARRALAAGLTPIVCVGETLAEREAGTTEQVVGAQLDAVLAVLSPDEA  184 (272)
T ss_dssp             HHHHHTTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHcCCCEEEECchhcccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhCCCHHHHHHHHHHHHHhCCCHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998875  47


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      ++++||||||||||||++||||++|++|++||++|+++|    ++++|||||| ||||+|+.+|+..
T Consensus       185 ~~vVIAYEPVWAIGTG~tAt~e~aqevh~~IR~~l~~~~----a~~~rIlYGG-SV~~~N~~el~~~  246 (272)
T 4g1k_A          185 ARIVVAYEPVWAIGTGKSATAEQAQQVHAFLRGRLAAKG----AGHVSLLYGG-SVKADNAAELFGQ  246 (272)
T ss_dssp             TTCEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHT----CTTSCEEECS-CCCTTTHHHHHTS
T ss_pred             CCEEEEECcHhhccCCCCCCHHHHHHHHHHHHHHHHHhh----cCCceEEEcC-CcCHhHHHHHhcC
Confidence            899999999999999999999999999999999999988    6789999999 9999999999843

>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1

Probab=100.00  E-value=4.9e-89  Score=604.35  Aligned_cols=229  Identities=45%  Similarity=0.654  Sum_probs=213.3

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCccccc
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEI   79 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGei   79 (237)
                      |||||||+||||||++.+++.+|++.+..... ...+++++|||||++|..+.+.+. +++.+||||||+.++|||||||
T Consensus         1 ~Mrk~~i~gNwKmn~~~~~~~~l~~~l~~~~~-~~~~vev~v~Pp~~~L~~v~~~~~~~~i~vgAQn~~~~~~GA~TGEi   79 (255)
T 1b9b_A            1 ITRKLILAGNWKMHKTISEAKKFVSLLVNELH-DVKEFEIVVCPPFTALSEVGEILSGRNIKLGAQNVFYEDQGAFTGEI   79 (255)
T ss_dssp             -CCSCEEEEECCBCCCHHHHHHHHHHHHHHTS-SCCSSEEEEECCGGGHHHHHHHHTTSSSEEEESCCCSSSSBSCTTCC
T ss_pred             CCCCCEEEEeCCcCcCHHHHHHHHHHHHhhcc-cccCeeEEEeCcHHHHHHHHHHhcCCCceEeeccCCCCCCCCccCcC
Confidence            67999999999999999999999999876332 224699999999999999999887 7899999999999999999999


Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--C
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--S  157 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~  157 (237)
                      ||+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.+++.+||+..+++++  +
T Consensus        80 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~  159 (255)
T 1b9b_A           80 SPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEE  159 (255)
T ss_dssp             CHHHHHTTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHTCHHHHHHHHHHHHHTTCCHHH
T ss_pred             CHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998874  3


Q ss_pred             CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH--------Hccccc
Q 026522          158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL--------LLSFGC  229 (237)
Q Consensus       158 ~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~--------~~~~~~  229 (237)
                      +++++||||||||||||++||||++|++|++||++|+++||.++++++|||||| ||||+|+.+++        ++|-+-
T Consensus       160 ~~~~vIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGG-SV~~~N~~~l~~~~diDG~LVGgAS  238 (255)
T 1b9b_A          160 AKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGG-SIKPDNFLGLIVQKDIDGGLVGGAS  238 (255)
T ss_dssp             HTTCEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEES-SCCHHHHTTTSSSTTCCEEEESGGG
T ss_pred             cCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcC-cCCHHHHHHHHcCCCCCeeEeehHh
Confidence            689999999999999999999999999999999999999998888899999999 99999999988        666555


Q ss_pred             ch
Q 026522          230 FY  231 (237)
Q Consensus       230 ~~  231 (237)
                      +.
T Consensus       239 Lk  240 (255)
T 1b9b_A          239 LK  240 (255)
T ss_dssp             TS
T ss_pred             hc
Confidence            44

>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.4e-88  Score=604.21  Aligned_cols=220  Identities=43%  Similarity=0.717  Sum_probs=209.9

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC----CCcEEeeeccccccCcCcc
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR----PGFHVAAQNCWVKKGGAFT   76 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~----~~i~igAQnv~~~~~GA~T   76 (237)
                      |+|||||+||||||++.+++.+|++.+....   ..+++|+|||||++|..+.+.+.    ++|.+||||||+.++||||
T Consensus        22 m~rk~~i~gNWKmn~t~~~~~~l~~~l~~~~---~~~vevvv~Pp~~~L~~v~~~~~~~~~~~i~vgAQn~~~~~~GAfT   98 (271)
T 3krs_A           22 MSRKYFVGGNFKCNGTKESLKTLIDSFKQVE---SSNSEVYVFPTSLHISLVKEFFGNDHPGVFKIGSQNISCTGNGAFT   98 (271)
T ss_dssp             -CCCCEEEEECCBCCCHHHHHHHHHHHTTCC---CCSSEEEEECCGGGHHHHHHHHCSSSCSCEEECBSCCCSSCSBSCT
T ss_pred             cCCCeEEEEEhhhCcCHHHHHHHHHHHHhcc---cCCceEEEECcHHHHHHHHHHHhhccCCCceEEecccccccCCCcc
Confidence            5689999999999999999999999987753   25799999999999999998873    6899999999999999999


Q ss_pred             cccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC
Q 026522           77 GEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS  156 (237)
Q Consensus        77 GeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~  156 (237)
                      |||||+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||+++||++|+|.++|.+||+.+|+++.
T Consensus        99 GEIS~~mLkd~G~~~ViiGHSERR~~f~Etde~v~~Kv~~Al~~GL~pIlCVGEtleere~g~t~~vv~~Ql~~~l~~v~  178 (271)
T 3krs_A           99 GEVSCEMLKDMDVDCSLVGHSERRQYYSETDQIVNNKVKKGLENGLKIVLCIGESLSERETGKTNDVIQKQLTEALKDVS  178 (271)
T ss_dssp             TCCCHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHTTTCC
T ss_pred             ccccHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHCCCHHHHHHHHHHHHHhchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          157 SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       157 ~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      ++++++||||||||||||++||||++|++|++||++|+++|+.++++++|||||| ||||+|+.+++.
T Consensus       179 ~~~~~vIAYEPvWAIGTG~tAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGG-SV~~~N~~el~~  245 (271)
T 3krs_A          179 DLSNLVIAYEPIWAIGTGVVATPGQAQEAHAFIREYVTRMYNPQVSSNLRIIYGG-SVTPDNCNELIK  245 (271)
T ss_dssp             CCTTEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHCCEEECS-CCCTTTHHHHHH
T ss_pred             hhcCEEEEECChhhhcCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcC-CcCHHHHHHHhc
Confidence            7899999999999999999999999999999999999999998889999999999 999999999874

>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*

Probab=100.00  E-value=1.8e-88  Score=598.55  Aligned_cols=219  Identities=46%  Similarity=0.778  Sum_probs=209.1

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      ||||||+||||||++.+++.+|++.+.....+  .+++++|||||++|..+.+.+. +++.+||||||+.++||||||||
T Consensus         1 Mr~~~i~gNwKmn~~~~~~~~~~~~l~~~~~~--~~vev~v~Pp~~~L~~v~~~~~~~~i~vgAQn~~~~~~GA~TGEiS   78 (247)
T 1ney_A            1 ARTFFVGGNFKLNGSKQSIKEIVERLNTASIP--ENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENS   78 (247)
T ss_dssp             CCCEEEEEECCBCCCHHHHHHHHHHHHHSCCC--TTEEEEEECCGGGHHHHHHHCCCTTEEEEESCCCSSSSBSCTTCCC
T ss_pred             CCCCEEEEECCcccCHHHHHHHHHHHHhhccc--cCceEEEeCcHHHHHHHHHHhcCCCceEEeccCCCCCCCCccCccC
Confidence            49999999999999999999999999764322  4699999999999999999887 78999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.+++.+||+..+++++++++
T Consensus        79 ~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~  158 (247)
T 1ney_A           79 VDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTN  158 (247)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTTCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHcCCCEEEECChhhccccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHCCCHHHHHHHHHHHHHhchhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988766889


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL  223 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~  223 (237)
                      ++||||||||||||++||||++|++|++||++|+++||.++++++|||||| ||||+|+.+++
T Consensus       159 ~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~va~~vrIlYGG-SV~~~N~~~l~  220 (247)
T 1ney_A          159 VVVAYEPVXAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGG-SANGSNAVTFK  220 (247)
T ss_dssp             EEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEES-SCCTTTGGGGT
T ss_pred             EEEEECChhhcCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcC-CcCHhHHHHHH
Confidence            999999999999999999999999999999999999998888899999999 99999999987

>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...

Probab=100.00  E-value=2.8e-88  Score=598.47  Aligned_cols=226  Identities=44%  Similarity=0.764  Sum_probs=212.4

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      ||||||+||||||++.+++.+|++.+.....+  .+++++|||||++|..+.+.+. ++|.+|||||| .++||||||||
T Consensus         3 mr~~~i~gNwKmn~~~~~~~~l~~~l~~~~~~--~~vev~v~Pp~~~L~~v~~~~~~~~i~vgAQn~~-~~~GA~TGEiS   79 (250)
T 2j27_A            3 KPQPIAAANWKCNGSQQSLSELIDLFNSTSIN--HDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAI-AKSGAFTGEVS   79 (250)
T ss_dssp             CCCCEEEEECCBCCCHHHHHHHHHHHHTCCCC--SCCEEEEECCGGGHHHHHHHCCCTTEEEEESCCB-SSCBSCTTCCB
T ss_pred             CCCcEEEEECccccCHHHHHHHHHHHHhhccc--cCceEEEeCCHHHHHHHHHHhcCCCceEeecccC-CCCCCcccccC
Confidence            79999999999999999999999999764322  4699999999999999999887 78999999999 99999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SW  158 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~  158 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.++|.+||+..|++++  ++
T Consensus        80 ~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~  159 (250)
T 2j27_A           80 LPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADW  159 (250)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHTCCGGGG
T ss_pred             HHHHHHcCCCEEEECchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHhhcccHHHHHHHHHHHHHhcCCHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999874  47


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH--------Hcccccc
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL--------LLSFGCF  230 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~--------~~~~~~~  230 (237)
                      ++++||||||||||||++||||++|++|++||++|+++|+.++++++|||||| ||||+|+.+++        ++|-+-+
T Consensus       160 ~~~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGG-SV~~~N~~~l~~~~diDG~LVGgAsL  238 (250)
T 2j27_A          160 AKVVIAYEAVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGG-SVNGKNARTLYQQRDVNGFLVGGASL  238 (250)
T ss_dssp             GGEEEEEECGGGTTSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEES-SCCTTTHHHHHTSTTCCEEEESGGGG
T ss_pred             CCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcC-CCCHHHHHHHHcCCCCCeeeeehHHH
Confidence            79999999999999999999999999999999999999998888899999999 99999999999        6665544


Q ss_pred             h
Q 026522          231 Y  231 (237)
Q Consensus       231 ~  231 (237)
                      +
T Consensus       239 ~  239 (250)
T 2j27_A          239 K  239 (250)
T ss_dssp             S
T ss_pred             H
Confidence            3

>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae}

Probab=100.00  E-value=9.9e-89  Score=607.45  Aligned_cols=220  Identities=35%  Similarity=0.556  Sum_probs=196.9

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCC-CceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCccccc
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSD-VVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEI   79 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~-~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGei   79 (237)
                      ||||||+||||||++.+++.+|++.+..... ... +++|+|||||++|..+.+.+. ++|.+||||||+.++|||||||
T Consensus        25 MRk~~i~gNWKMn~~~~~~~~l~~~l~~~~~-~~~~~vevvv~Pp~~~L~~v~~~~~~~~i~vgAQn~~~~~~GAfTGEI  103 (275)
T 3kxq_A           25 NIRPFIAGNWKMNGTGESLGELRAIAAGISS-DLGRLFEALICVPATLLSRAFDILGGENILLGGQNCHFDDYGPYTGDI  103 (275)
T ss_dssp             -CCCEEEEECCBCCCGGGHHHHHHHHHHHC-----CCSEEEEECCTTTHHHHHHHHTTSSSEEEESCCCSSSSBSCTTCC
T ss_pred             CCCCEEEEEhhhCcCHHHHHHHHHHHHhhcc-cccCCceEEEeCCHHHHHHHHHHhcCCCceEEecccccccCCCccCcC
Confidence            6999999999999999999999999877432 223 789999999999999999887 7899999999999999999999


Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhc-cCCC
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR-VSSW  158 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~-i~~~  158 (237)
                      ||+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+|||||+++|++|+|.++|.+||+.+|+. .++ 
T Consensus       104 S~~mLkd~G~~~VIiGHSERR~~f~Etde~V~~Kv~~Al~~GL~pIlCVGEtleeRe~g~t~~vv~~Ql~~~l~~~~~~-  182 (275)
T 3kxq_A          104 SAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWRAGLVALICVGETLEERKSNKVLDVLTRQLEGSLPDGATA-  182 (275)
T ss_dssp             CHHHHHHHTCSEEEESCHHHHHHTCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHSCTTCCT-
T ss_pred             CHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHCCCHHHHHHHHHHHHHcCCccc-
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999975 334 


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      ++++||||||||||||++||||++|++|++||++|+++|+ ++++++|||||| ||||+|+.+|+..
T Consensus       183 ~~vVIAYEPVWAIGTGktAt~e~aqevh~~IR~~l~~~~~-~~a~~~rIlYGG-SV~~~Na~el~~~  247 (275)
T 3kxq_A          183 ENIIIAYEPVWAVGTGNTATSADVAEVHAFIHHKMHSRFG-DEGAKIRLLYGG-SVKPSNAFELLST  247 (275)
T ss_dssp             TTEEEEECCCC--------CHHHHHHHHHHHHHHHHHHHH-HHHTTSCEEECS-CCCTTTHHHHHTS
T ss_pred             CCEEEEECChhhhcCCCCCCHHHHHHHHHHHHHHHHHhhh-hhcccceEEEcC-CcCHhHHHHHHcC
Confidence            7899999999999999999999999999999999999987 678999999999 9999999999843

>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A

Probab=100.00  E-value=3.6e-88  Score=599.32  Aligned_cols=220  Identities=46%  Similarity=0.793  Sum_probs=208.4

Q ss_pred             CCcceEEEecccC-CCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccC
Q 026522            2 GRKFFVGGNWKCN-GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         2 ~r~~~i~~NWKmn-~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      ||||||+|||||| ++.+++.+|++.+.....+  .+++++|||||++|..+.+.+.++|.+||||||+.++||||||||
T Consensus         4 mr~~~i~gNWKmn~~~~~~~~~l~~~l~~~~~~--~~~ev~v~Pp~~~L~~v~~~~~~~i~vgAQn~~~~~~GA~TGEiS   81 (255)
T 3qst_A            4 MRTFFVGGNWKANPKTVQEAEKLVEMLNGAKVE--GNVEVVVAAPFVFLPTLQQKLRKDWKVSAENVFTKPNGAFTGEVT   81 (255)
T ss_dssp             -CCCEEEEECCSCCSSHHHHHHHHHHHHTCCCC--SSCEEEEECCGGGHHHHHHHSCTTSEEEESCCCSSSSSSCTTCCC
T ss_pred             CCCcEEEEEhhcccCCHHHHHHHHHHHHhhccc--CCceEEEeCCHHHHHHHHHHhccCCeEEecccCCCCCCCccCccC
Confidence            6999999999999 9999999999999864322  359999999999999999887778999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SW  158 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~  158 (237)
                      |+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|+|.++|.+||+.++++++  ++
T Consensus        82 ~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pIlCvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~  161 (255)
T 3qst_A           82 VPMIKSFGIEWTILGHSERRDILKEDDEFLAAKAKFALENGMKIIYCCGEHLSEREAGKASEFVSAQIEKMIPAIPAGKW  161 (255)
T ss_dssp             HHHHHTTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHGGGSCTTCG
T ss_pred             HHHHHHcCCCEEEECchhhhhhcCCCHHHHHHHHHHHHHCCCeEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998864  57


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      ++++||||||||||||++|||+++|++|++||++|+++|+.++++++|||||| ||||+|+.+++.
T Consensus       162 ~~~vIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGG-SV~~~N~~~l~~  226 (255)
T 3qst_A          162 DDVVIAYEPIWAIGTGKVASTQDAQEMCKVIRDILAAKVGADIANKVRILYGG-SVKPNNCNELAA  226 (255)
T ss_dssp             GGEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECS-CCCTTTHHHHHH
T ss_pred             CCEEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcC-CcCHhHHHHHhc
Confidence            89999999999999999999999999999999999999998889999999999 999999999884

>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*

Probab=100.00  E-value=3.8e-88  Score=597.93  Aligned_cols=218  Identities=51%  Similarity=0.861  Sum_probs=207.9

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      ||||||+||||||++.+++.+|++.+.....+  .+++++|||||++|..+.+.+. ++|.+|||||| .++||||||||
T Consensus         4 mr~~~i~gNwKmn~~~~~~~~l~~~l~~~~~~--~~vev~v~Pp~~~L~~v~~~~~~~~i~vgAQn~~-~~~GA~TGEiS   80 (251)
T 2vxn_A            4 KPQPIAAANWKCNGTTASIEKLVQVFNEHTIS--HDVQCVVAPTFVHIPLVQAKLRNPKYVISAQNAI-AKSGAFTGEVS   80 (251)
T ss_dssp             CCCCEEEEECCSCCCHHHHHHHHHHHHHSCCC--SCCEEEEECCGGGHHHHHHHCCCTTEEEEESCCB-SSCSSCTTCCB
T ss_pred             CCCCEEEEecccccCHHHHHHHHHHHHhhccc--cCceEEEECcHHHHHHHHHHhcCCCceEeecccC-CCCCCCcCcCC
Confidence            79999999999999999999999999764322  4699999999999999999887 78999999999 99999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SW  158 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~  158 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.++|.+||+.+|+.++  ++
T Consensus        81 ~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~  160 (251)
T 2vxn_A           81 MPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAW  160 (251)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCTGGG
T ss_pred             HHHHHHcCCCEEEECchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhCCCHHHHHHHHHHHHHhcCCHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998874  46


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL  223 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~  223 (237)
                      ++++||||||||||||++||||++|++|++||++|+++|+.++++++|||||| ||||+|+.+++
T Consensus       161 ~~~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGG-SV~~~N~~~l~  224 (251)
T 2vxn_A          161 NQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGG-SVNAANAATLY  224 (251)
T ss_dssp             GGEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEES-SCCTTTHHHHH
T ss_pred             CCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcC-CcCHhHHHHHh
Confidence            89999999999999999999999999999999999999998888899999999 99999999998

>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}

Probab=100.00  E-value=3.7e-88  Score=597.76  Aligned_cols=221  Identities=38%  Similarity=0.572  Sum_probs=208.8

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      ||||||+||||||++.+++.+|++.+..... ... ++++|||||++|..+.+.+. +++.+||||||+.++||||||||
T Consensus         1 Mr~~~i~gNwKmn~~~~~~~~~~~~l~~~~~-~~~-vev~v~Pp~~~L~~v~~~~~~~~i~vgAQn~~~~~~GA~TGEiS   78 (250)
T 1yya_A            1 MRRVLVAGNWKMHKTPSEARVWFAELKRLLP-PLQ-SEAAVLPAFPILPVAKEVLAETQVGYGAQDVSAHKEGAYTGEVS   78 (250)
T ss_dssp             CCCCEEEEECCBCCCHHHHHHHHHHHHHHCC-CCS-SEEEEECCGGGHHHHHHHHTTSSCEEEESCCCSSSSBSCTTCCC
T ss_pred             CCCCEEEEeCccccCHHHHHHHHHHHHhhcc-ccC-ceEEEeCCHHHHHHHHHHhcCCCCeEEeccCCCCCCCCccCcCC
Confidence            4999999999999999999999999876332 223 99999999999999999887 78999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SW  158 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~  158 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||+++||++|+|.+++.+||+..|++++  ++
T Consensus        79 ~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGE~leere~g~t~~vv~~Ql~~~l~~~~~~~~  158 (250)
T 1yya_A           79 ARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGP  158 (250)
T ss_dssp             HHHHHHTTCSEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHTTTCCCSSG
T ss_pred             HHHHHHcCCCEEEeCchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998884  46


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      ++++||||||||||||++||||++|++|++||++|+++||.++++++|||||| ||||+|+.+++..
T Consensus       159 ~~vvIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGG-SV~~~N~~~l~~~  224 (250)
T 1yya_A          159 EALVIAYEPVWAIGTGKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGG-SVNPKNFADLLSM  224 (250)
T ss_dssp             GGCEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTCEEEEES-SCCTTTHHHHHTS
T ss_pred             CcEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcC-CCCHHHHHHHHcC
Confidence            79999999999999999999999999999999999999998888999999999 9999999999843

>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*

Probab=100.00  E-value=2.5e-88  Score=600.04  Aligned_cols=219  Identities=38%  Similarity=0.631  Sum_probs=206.3

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhc---C-CCcEEeeeccccccCcCccc
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSL---R-PGFHVAAQNCWVKKGGAFTG   77 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~---~-~~i~igAQnv~~~~~GA~TG   77 (237)
                      ||||||+||||||++.+++.+|++.+ ... +...+++++|||||++|..+.+.+   . ++|.+||||||+.++|||||
T Consensus         2 Mrk~~i~gNwKmn~~~~~~~~l~~~l-~~~-~~~~~~ev~v~Pp~~~L~~v~~~~~~~~~~~i~vgAQn~~~~~~GA~TG   79 (254)
T 3m9y_A            2 MRTPIIAGNWKMNKTVQEAKDFVNAL-PTL-PDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTG   79 (254)
T ss_dssp             CCCCEEEEECCBCCCHHHHHHHHHHC-CCC-CCTTTCEEEEEECHHHHHHHHHHHHTTSSTTCEEEESCCCSSSSBSCTT
T ss_pred             CCCCEEEEEhhhCcCHHHHHHHHHHH-Hhc-cccCCceEEEECCHHHHHHHHHHHhhcCCCcceEEecccccccCCCccC
Confidence            59999999999999999999999998 433 233579999999999999999988   6 78999999999999999999


Q ss_pred             ccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC-
Q 026522           78 EISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS-  156 (237)
Q Consensus        78 eiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~-  156 (237)
                      ||||+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|+|.++|.+||+..|+.++ 
T Consensus        80 EiS~~mL~d~G~~~ViiGHSERR~~f~Etd~~V~~Kv~~Al~~GL~pIlCvGEtleere~g~t~~vv~~Ql~~~l~~~~~  159 (254)
T 3m9y_A           80 ETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSE  159 (254)
T ss_dssp             CCCHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCH
T ss_pred             cCCHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHCCCHHHHHHHHHHHHHhcCCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999885 


Q ss_pred             -CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH
Q 026522          157 -SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL  223 (237)
Q Consensus       157 -~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~  223 (237)
                       ++++++||||||||||||++|||+++|++|++||++|+++|+.++++++|||||| ||||+|+.+++
T Consensus       160 ~~~~~vvIAYEPvWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGG-SV~~~N~~~l~  226 (254)
T 3m9y_A          160 DQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGG-SVKPNNIKEYM  226 (254)
T ss_dssp             HHHHHCEEEECCGGGCC--CCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSEEEECS-CCCTTTHHHHH
T ss_pred             HHhCCEEEEECChhhhcCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcC-CcCHHHHHHHH
Confidence             4678999999999999999999999999999999999999998889999999999 99999999998

>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1

Probab=100.00  E-value=1.3e-87  Score=600.30  Aligned_cols=228  Identities=51%  Similarity=0.799  Sum_probs=213.5

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCH
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISA   81 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa   81 (237)
                      ||||||+||||||++.+++.+|++.+.....+  .+++|+|||||++|..+.+.+...|.+||||||+.++|||||||||
T Consensus        22 mrk~~i~gNWKmn~t~~~~~~l~~~l~~~~~~--~~vevvv~Pp~~~L~~v~~~~~~~i~vgAQn~~~~~~GAfTGEIS~   99 (275)
T 1mo0_A           22 TRKFFVGGNWKMNGDYASVDGIVTFLNASADN--SSVDVVVAPPAPYLAYAKSKLKAGVLVAAQNCYKVPKGAFTGEISP   99 (275)
T ss_dssp             CSCEEEEEECCBCCCHHHHHHHHHHHHHSCCC--TTEEEEEECCGGGHHHHHHHSCTTEEEEESCCCSSSSBSCTTCCCH
T ss_pred             CCCCEEEEecccccCHHHHHHHHHHHhhhccc--cCceEEEeCcHHHHHHHHHHhhCCCeEEeccCCCCCCCCccCcCCH
Confidence            79999999999999999999999999764322  4699999999999999999887349999999999999999999999


Q ss_pred             HHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCe
Q 026522           82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNI  161 (237)
Q Consensus        82 ~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~i  161 (237)
                      +||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.+++.+||+.+++++++++++
T Consensus       100 ~mLkd~G~~~ViiGHSERR~~f~Etde~V~~Kv~~Al~~GL~pI~CvGEtleeReag~t~~vv~~Ql~~~l~~~~~~~~v  179 (275)
T 1mo0_A          100 AMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENI  179 (275)
T ss_dssp             HHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTTCCSTTE
T ss_pred             HHHHHcCCCEEEeCchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhCCChHHHHHHHHHHHHhhhhhhcCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888668899


Q ss_pred             EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH--------Hcccccchh
Q 026522          162 VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL--------LLSFGCFYN  232 (237)
Q Consensus       162 iIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~--------~~~~~~~~~  232 (237)
                      +||||||||||||++||||+||++|++||++|++++|.++++++|||||| ||||+|+.+++        ++|-+-+++
T Consensus       180 vIAYEPvWAIGTGktAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGG-SV~~~N~~el~~~~diDG~LVGgASLka  257 (275)
T 1mo0_A          180 VIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGG-SVTADNAAELGKKPDIDGFLVGGASLKP  257 (275)
T ss_dssp             EEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEES-SCCTTTHHHHTTSTTCCEEEESGGGGST
T ss_pred             EEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhChhhcCcccEEEcC-CCCHhhHHHHhcCCCCCeeEechHHhCh
Confidence            99999999999999999999999999999999999998888899999999 99999999998        566554443

>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A

Probab=100.00  E-value=8.1e-88  Score=597.40  Aligned_cols=222  Identities=45%  Similarity=0.730  Sum_probs=209.2

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCccccc
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEI   79 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGei   79 (237)
                      |||||||+||||||++.+++.+|++.+.....+  .+++++|||||++|..+.+.+. ++|.+||||||+.++|||||||
T Consensus         2 ~~r~~~i~gNwKmn~~~~~~~~l~~~l~~~~~~--~~vev~v~Pp~~~L~~v~~~~~~~~i~vgAQn~~~~~~GAfTGEi   79 (257)
T 2yc6_A            2 PARRPFIGGNFKCNGSLDFIKSHVAAIAAHKIP--DSVDVVIAPSAVHLSTAIAANTSKQLRIAAQNVYLEGNGAWTGET   79 (257)
T ss_dssp             CCCCCEEEEECCSCCCHHHHHHHHHHHHTSCCC--TTSEEEEECCGGGHHHHHHHCCCSSCEEEESCCCSSCSSSCTTCC
T ss_pred             CCCCeEEEEECccccCHHHHHHHHHHHhhcccc--cCceEEEeCCHHHHHHHHHHhCCCCceEEeccCCCCCCcCccCcc
Confidence            379999999999999999999999998761122  5699999999999999999887 7899999999999999999999


Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc-CC-
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV-SS-  157 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i-~~-  157 (237)
                      ||+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.++|.+||+..|+++ +. 
T Consensus        80 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~  159 (257)
T 2yc6_A           80 SVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESK  159 (257)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCChh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999888 42 


Q ss_pred             --CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          158 --WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       158 --~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                        +++++||||||||||||++||||++|++|++||++|+++||.++++++|||||| ||||+|+.+++..
T Consensus       160 ~~~~~vvIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGG-SV~~~N~~~l~~~  228 (257)
T 2yc6_A          160 MLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGG-SANGSNNEKLGQC  228 (257)
T ss_dssp             HHHHTEEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEES-SCCTTTHHHHHTS
T ss_pred             hccCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcC-ccCHHHHHHHHcC
Confidence              569999999999999999999999999999999999999998888899999999 9999999999843

>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A

Probab=100.00  E-value=4.7e-88  Score=598.31  Aligned_cols=219  Identities=40%  Similarity=0.604  Sum_probs=207.0

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      ||||||+||||||++.+++.+|++.+.... +...+++++|||||++|..+.+.+. ++|.+||||||+.++||||||||
T Consensus         1 Mrk~~i~gNwKmn~~~~~~~~~~~~l~~~~-~~~~~vev~v~Pp~~~L~~v~~~~~~~~i~vgAQn~~~~~~GA~TGEiS   79 (255)
T 1tre_A            1 MRHPLVMGNWKLNGSRHMVHELVSNLRKEL-AGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVNLNLSGAFTGETS   79 (255)
T ss_dssp             CCCCEEEEECCBCCCHHHHHHHHHHHHHHH-TTCCSCEEEEECCTTTHHHHHHHHTTSSEEEEESCCCSCSSBSCTTCCC
T ss_pred             CCCCEEEEecccccCHHHHHHHHHHHHhhc-ccccCeeEEEeCcHHHHHHHHHHhcCCCCeEeeccCCCCCCCCcCCcCC
Confidence            499999999999999999999999986522 2224699999999999999999887 78999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SW  158 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~  158 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.++|.+||+..|++++  ++
T Consensus        80 ~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~  159 (255)
T 1tre_A           80 AAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAF  159 (255)
T ss_dssp             HHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHcCCCEEEECccccccccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998874  47


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL  223 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~  223 (237)
                      ++++||||||||||||++||||++|++|++||++|++ ||.++++++|||||| ||||+|+.+++
T Consensus       160 ~~vvIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~-~~~~~a~~vrIlYGG-SV~~~N~~~l~  222 (255)
T 1tre_A          160 EGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGG-SVNASNAAELF  222 (255)
T ss_dssp             TTCEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHCEEEECS-CCCTTTHHHHH
T ss_pred             CcEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHh-cChhhcCcccEEEcC-CCCHHHHHHHH
Confidence            8999999999999999999999999999999999999 888778899999999 99999999998

>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A

Probab=100.00  E-value=1.1e-87  Score=595.11  Aligned_cols=228  Identities=40%  Similarity=0.613  Sum_probs=213.0

Q ss_pred             CcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCH
Q 026522            3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISA   81 (237)
Q Consensus         3 r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa   81 (237)
                      |||||+||||||++.+++.+|++.+.... +...+++++|||||++|..+.+.+. +++.+||||||+.++|||||||||
T Consensus         1 r~~~i~gNwKmn~~~~~~~~~~~~l~~~~-~~~~~vev~v~Pp~~~L~~v~~~~~~~~i~vgAQn~~~~~~GA~TGEiS~   79 (252)
T 2btm_A            1 RKPIIAGNWKMNGTLAEAVQFVEDVKGHV-PPADEVISVVCAPFLFLDRLVQAADGTDLKIGAQTMHFADQGAYTGEVSP   79 (252)
T ss_dssp             CCCEEEEECCBCCCHHHHHHHHHHHTTTS-CCTTTCEEEEEECGGGHHHHHHHHTTSSEEEEESCCCSSSSBSCTTCCCH
T ss_pred             CCcEEEEEcccccCHHHHHHHHHHHHhhc-ccccCeeEEEECcHHHHHHHHHHhcCCCceEEeccCCCCCCCCcCCcCCH
Confidence            68999999999999999999999986533 2224699999999999999998887 789999999999999999999999


Q ss_pred             HHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCC
Q 026522           82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWS  159 (237)
Q Consensus        82 ~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~~  159 (237)
                      +||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||+++||++|+|.+++.+||+..|++++  +++
T Consensus        80 ~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~~  159 (252)
T 2btm_A           80 VMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVK  159 (252)
T ss_dssp             HHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCHHHHT
T ss_pred             HHHHHcCCCEEEeCchhcccccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhCCCHHHHHHHHHHHHHhcCCHHHcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999885  368


Q ss_pred             CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH--------Hcccccch
Q 026522          160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL--------LLSFGCFY  231 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~--------~~~~~~~~  231 (237)
                      +++||||||||||||++||||++|++|++||++|+++||.++++++|||||| ||||+|+.+++        ++|-+-+.
T Consensus       160 ~~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGG-SV~~~N~~~l~~~~diDG~LVGgAsL~  238 (252)
T 2btm_A          160 QAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGG-SVKPDNIRDFLAQQQIDGALVGGASLE  238 (252)
T ss_dssp             TCEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEES-SCCTTTHHHHHTSTTCCEEEESGGGSS
T ss_pred             CEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcC-CCCHHHHHHHHcCCCCCeeEecHHHhC
Confidence            9999999999999999999999999999999999999998888999999999 99999999999        67665554


Q ss_pred             h
Q 026522          232 N  232 (237)
Q Consensus       232 ~  232 (237)
                      +
T Consensus       239 a  239 (252)
T 2btm_A          239 P  239 (252)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1

Probab=100.00  E-value=7.4e-88  Score=599.25  Aligned_cols=228  Identities=51%  Similarity=0.825  Sum_probs=211.6

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHh---cCCCCCCCCceEEEcCccccHHHHHHhcC-CC----cEEeeeccccccC
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLN---EGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PG----FHVAAQNCWVKKG   72 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~---~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~----i~igAQnv~~~~~   72 (237)
                      |||||||+||||||++.+++.+|++.+.   .... . .+++++|||||++|..+.+.+. ++    |.+|||||| .++
T Consensus         2 ~mr~~~i~gNwKmn~~~~~~~~l~~~l~~~~~~~~-~-~~vev~v~Pp~~~L~~v~~~~~~~~~~~~i~vgAQn~~-~~~   78 (261)
T 1m6j_A            2 GAGKFVVGGNWKCNGTLASIETLTKGVAASVDAEL-A-KKVEVIVGVPFIYIPKVQQILAGEANGANILVSAENAW-TKS   78 (261)
T ss_dssp             CCSCEEEEEECCBCCCHHHHHHHHHHHHHHCCHHH-H-TTEEEEEEECGGGHHHHHHHHHTSTTGGGEEEEESCCB-SSS
T ss_pred             CCCCcEEEEEcccccCHHHHHHHHHHHHhhhhhcc-c-cCceEEEeCCHHHHHHHHHHhcCCCCCceeEEEeccCC-CCC
Confidence            3799999999999999999999999986   4221 1 4689999999999999988876 55    999999999 999


Q ss_pred             cCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 026522           73 GAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA  152 (237)
Q Consensus        73 GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l  152 (237)
                      |||||||||+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.++|.+||+.+|
T Consensus        79 GAfTGEiS~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l  158 (261)
T 1m6j_A           79 GAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAIN  158 (261)
T ss_dssp             BSCTTCCBHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCccccCCHHHHHHcCCCEEEECchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccC--CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH-------
Q 026522          153 DRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL-------  223 (237)
Q Consensus       153 ~~i~--~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~-------  223 (237)
                      ++++  ++++++||||||||||||++||||++|++|++||++|+++|+.++++++|||||| ||||+|+.+++       
T Consensus       159 ~~~~~~~~~~~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGG-SV~~~N~~~l~~~~diDG  237 (261)
T 1m6j_A          159 NAISKEAWKNIILAYEPVWAIGTGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGG-SVNPANCNELAKKADIDG  237 (261)
T ss_dssp             HHSCTGGGGGEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECS-CCCTTTHHHHHTSTTCCE
T ss_pred             hcCCHHHcCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcC-CcCHhhHHHHhcCCCCCe
Confidence            9884  4789999999999999999999999999999999999999998888899999999 99999999998       


Q ss_pred             -Hcccccchh
Q 026522          224 -LLSFGCFYN  232 (237)
Q Consensus       224 -~~~~~~~~~  232 (237)
                       ++|-+-+++
T Consensus       238 ~LVGgAsL~a  247 (261)
T 1m6j_A          238 FLVGGASLDA  247 (261)
T ss_dssp             EEESGGGGSH
T ss_pred             eEecHHHhCh
Confidence             666555543

>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A

Probab=100.00  E-value=2.9e-87  Score=593.84  Aligned_cols=220  Identities=38%  Similarity=0.601  Sum_probs=206.3

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC---CCcEEeeeccccccCcCcccc
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR---PGFHVAAQNCWVKKGGAFTGE   78 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~---~~i~igAQnv~~~~~GA~TGe   78 (237)
                      ||||||+||||||++.+++.+|++.+.... +...+++++|||||++|..+.+.+.   ++|.+||||||+.++||||||
T Consensus         1 mr~~~i~gNwKmn~~~~~~~~~~~~l~~~~-~~~~~vev~v~Pp~~~L~~v~~~~~~~~~~i~vgAQn~~~~~~GA~TGE   79 (256)
T 1aw2_A            1 MRHPVVMGNWKLNGSKEMVVDLLNGLNAEL-EGVTGVDVAVAPPALFVDLAERTLTEAGSAIILGAQNTDLNNSGAFTGD   79 (256)
T ss_dssp             -CCCEEEEECCBCCCHHHHHHHHHHHHHHT-TTCCSSEEEEECCGGGHHHHHHHHHHHTCCCEEEESCCCSCSSBSCTTC
T ss_pred             CCCCEEEEEcccccCHHHHHHHHHHHHhhc-ccccCeeEEEeCcHHHHHHHHHHHhCCCCCceEEeccCCCCCCCCccCc
Confidence            499999999999999999999999987632 2224699999999999999988775   589999999999999999999


Q ss_pred             cCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--
Q 026522           79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--  156 (237)
Q Consensus        79 iSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--  156 (237)
                      |||+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.++|.+||+..|++++  
T Consensus        80 iS~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~  159 (256)
T 1aw2_A           80 MSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVE  159 (256)
T ss_dssp             CCHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHCGG
T ss_pred             cCHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998874  


Q ss_pred             CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          157 SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       157 ~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      ++++++||||||||||||++||||++|++|++||++|++ ++.++++++|||||| ||||+|+.+++.
T Consensus       160 ~~~~vvIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~-~~~~~a~~vrIlYGG-SV~~~N~~~l~~  225 (256)
T 1aw2_A          160 ALEGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAE-KSEAVAKNVVIQYGG-SVKPENAAAYFA  225 (256)
T ss_dssp             GGTTCEEEECCTTTTTSSCCCCHHHHHHHHHHHHHHHHT-TCHHHHHHCEEEECS-CCCTTTHHHHTT
T ss_pred             HcCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHh-cChhhcccccEEEcC-CCCHHHHHHHHc
Confidence            478999999999999999999999999999999999999 788778899999999 999999999984

>3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS}

Probab=100.00  E-value=2.8e-84  Score=585.53  Aligned_cols=219  Identities=27%  Similarity=0.375  Sum_probs=199.5

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCC-----CCCceEEEcCccccHHHHHHhcC---------------CCcE
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPS-----SDVVEVVVSPPFVFLGLVKSSLR---------------PGFH   61 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~-----~~~~~v~i~Pp~~~L~~~~~~~~---------------~~i~   61 (237)
                      ||||||+||||||++..++.+|++.|.......     ..+++|+|||||++|..+.+.++               ++|.
T Consensus        34 mrk~li~gNWKMn~t~~~~~~~~~~l~~~l~~~~~~~~~~~vevvV~Ppf~~L~~v~~~l~~~~~~~~~~~~~~~~~~i~  113 (310)
T 3s6d_A           34 LPKTLLIISLKMYFTPSRTIDYIQGLLEPRNDIIRQENRSRLLLALIPDFLTIYPCSEAIKEFESNLAAPQDADTPPPLL  113 (310)
T ss_dssp             CCSEEEEEECTTCCCHHHHHHHHHHHHCGGGCCSCGGGTTTEEEEEECCGGGHHHHHHHHHHHHTTSCCC------CSSE
T ss_pred             ccCCEEEEEccccCCHHHHHHHHHHHHHHHhhcccccccCCceEEEECCHHHHHHHHHHHhhccccccccccccCCCcce
Confidence            599999999999999999999999986543211     24689999999999999988763               6799


Q ss_pred             EeeeccccccCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHh-----
Q 026522           62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRE-----  136 (237)
Q Consensus        62 igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~-----  136 (237)
                      +||||||+.++|||||||||+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|+     
T Consensus       114 vgAQn~~~~~~GAfTGEISa~mLkd~G~~~ViiGHSERR~~f~Etde~V~~Kv~aAl~~GL~pIvCVGEtleere~~~~~  193 (310)
T 3s6d_A          114 LGAQDCFWDSLGPYTGEISPVCLRDMNVSIVELGHAERRAIFGETDQQVARKAAAAADQGLIPLVCIGEVSTLGPIVSEA  193 (310)
T ss_dssp             EEESCCCSSSSSSCTTCCCHHHHHHTTCCEEEESCHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEECCCSCCCSSHHHH
T ss_pred             EEeccccccCCCCccccCCHHHHHHcCCCEEEecccccccccCCCHHHHHHHHHHHHHCCCEEEEEeCCcHHHhhhhccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             cCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCCh
Q 026522          137 AGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINV  216 (237)
Q Consensus       137 ~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~  216 (237)
                      +|+|.++|.+||+.+|+.++.+++++||||||||||||++||||++|++|++||++|+++|+ ++++++|||||| ||||
T Consensus       194 ~g~t~~vv~~Ql~~~l~~l~~~~~vVIAYEPVWAIGTGk~Atpe~aqevh~~IR~~l~~~~~-~~a~~vrILYGG-SV~~  271 (310)
T 3s6d_A          194 IGRAVGECEAQIRPVLEALPRDAPVIFAYEPVWAIGKPQPARVDHVGAVVSGIRSVIERIDR-HRKGEVRILYGG-SAGP  271 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSCEEEEECCGGGC-----CCHHHHHHHHHHHHHHHHHHHT-TCSSCEEEEEEE-EECT
T ss_pred             cccHHHHHHHHHHHHHhcCCcccceEEEECChhhccCCCCCCHHHHHHHHHHHHHHHHHhhh-cccCceeEEEcC-ccCH
Confidence            99999999999999999987778999999999999999999999999999999999999986 468899999999 9999


Q ss_pred             hhHHHH
Q 026522          217 SHVLVH  222 (237)
Q Consensus       217 ~Na~~~  222 (237)
                      +|+.++
T Consensus       272 ~n~~~~  277 (310)
T 3s6d_A          272 GLWGPG  277 (310)
T ss_dssp             TTTTTT
T ss_pred             HHHhhh
Confidence            999983

>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}

Probab=100.00  E-value=9e-83  Score=561.78  Aligned_cols=213  Identities=46%  Similarity=0.762  Sum_probs=195.9

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      ||||||+||||||++.+++.+|++.+..... . .+++++|||||++|..+.+.+. +++.+||||||+.++        
T Consensus         4 mrk~~i~gNWKmn~~~~~~~~l~~~l~~~~~-~-~~vev~v~Pp~~~L~~v~~~~~~~~i~vgAQn~~~~~~--------   73 (244)
T 2v5b_A            4 KPQPIAAANWKCNGSESLLVPLIETLNAATF-D-HDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNAGNADA--------   73 (244)
T ss_dssp             CCCCEEEEEECC-----CCHHHHHHHHHCCC-C-SCCEEEEEECGGGHHHHHHHCCCTTEEEEESCCCCHHH--------
T ss_pred             CCCcEEEEECCcccCHHHHHHHHHHHHhhcc-c-cCceEEEeCcHHHHHHHHHHhcCCCceEEeccCCCCCC--------
Confidence            7999999999999999999999999976432 2 4699999999999999999887 789999999999887        


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SW  158 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~  158 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+|||||+++|++|+|.+++.+||+..|++++  ++
T Consensus        74 ~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleereag~t~~vv~~Ql~~~l~~~~~~~~  153 (244)
T 2v5b_A           74 LASLKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAW  153 (244)
T ss_dssp             HHHHHHTTCCEEEECCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCTGGG
T ss_pred             HHHHHHcCCCEEEeCchhhhhccCCCHHHHHHHHHHHHHCCCeEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999885  36


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      ++++||||||||||||++||||++|++|++||++|+++||.++++++|||||| ||||+|+.+|+..
T Consensus       154 ~~~vIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGG-SV~~~N~~~l~~~  219 (244)
T 2v5b_A          154 SRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGG-SVTAKNARTLYQM  219 (244)
T ss_dssp             GGEEEEECCHHHHSSSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECS-CCCHHHHHHHHTS
T ss_pred             CCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcC-CCCHhHHHHHhcC
Confidence            79999999999999999999999999999999999999998888899999999 9999999998753

>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}

Probab=100.00  E-value=2.1e-82  Score=555.89  Aligned_cols=213  Identities=31%  Similarity=0.469  Sum_probs=191.7

Q ss_pred             cceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHH
Q 026522            4 KFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEM   83 (237)
Q Consensus         4 ~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~m   83 (237)
                      +|||+||||||++.+++.+|++.+.... +...+++++|||||++|..+.   .++|.+||||||+.++|||||||||+|
T Consensus         1 ~~~i~gNwKmn~~~~~~~~l~~~l~~~~-~~~~~vev~v~Pp~~~L~~v~---~~~i~vgAQn~~~~~~GAfTGEiS~~m   76 (233)
T 2jgq_A            1 TKIAMANFKSAMPIFKSHAYLKELEKTL-KPQHFDRVFVFPDFFGLLPNS---FLHFTLGVQNAYPRDCGAFTGEITSKH   76 (233)
T ss_dssp             CCEEEEECTBCSCHHHHHHHHHHHHHHS-CGGGTTTEEEECCTTTCCCSC---CSSSEECBSCCBSSSSBSCTTCCBHHH
T ss_pred             CcEEEEECCcCcCHHHHHHHHHHHHhhc-ccccCceEEEeCCHHHHHHhc---CCCceEEeccCCCCCCCCccCccCHHH
Confidence            5899999999999999999999987632 222368999999999998775   468999999999999999999999999


Q ss_pred             HHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcC--CcHHHHHHHHHHHHhccCCCCCe
Q 026522           84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAG--STMDVVAAQTKAIADRVSSWSNI  161 (237)
Q Consensus        84 Lkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g--~~~~vl~~Ql~~~l~~i~~~~~i  161 (237)
                      |+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|  +|.+++.+||+. +. .+ ++++
T Consensus        77 L~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~~~t~~vv~~Ql~~-l~-~~-~~~~  153 (233)
T 2jgq_A           77 LEELKIHTLLIGHSERRTLLKESPSFLKEKFDFFKSKNFKIVYCIGEELTTREKGFKAVKEFLSEQLEN-ID-LN-YPNL  153 (233)
T ss_dssp             HHHTTCCEEEECCHHHHHTTCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHCHHHHHHHHHHHHTT-SC-TT-CTTE
T ss_pred             HHHcCCCEEEeCchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCchhHHHHHHHHHHh-hh-hh-ccce
Confidence            9999999999999999999999999999999999999999999999999999999  999999999987 32 23 7899


Q ss_pred             EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH--------Hcccccchh
Q 026522          162 VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL--------LLSFGCFYN  232 (237)
Q Consensus       162 iIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~--------~~~~~~~~~  232 (237)
                      +|||||+||||||++||||++|++|++||++++        +++|||||| ||||+|+.+++        ++|-+-+.+
T Consensus       154 vIAYEPvWAIGTG~~At~e~a~ev~~~IR~~l~--------~~vrIlYGG-SV~~~N~~~l~~~~diDG~LVGgAsl~a  223 (233)
T 2jgq_A          154 VVAYEPIWAIGTKKSASLEDIYLTHGFLKQILN--------QKTPLLYGG-SVNTQNAKEILGIDSVDGLLIGSASWEL  223 (233)
T ss_dssp             EEEECCGGGTTC--CCCHHHHHHHHHHHHHHSC--------TTSCEEEES-SCCTTTHHHHHTSTTCCEEEESGGGGSH
T ss_pred             EEEEeCHHHhCCCCCCCHHHHHHHHHHHHHHHh--------cCCcEEEcC-CcChhhHHHHhcCCCCCeeEecHHHhCh
Confidence            999999999999999999999999999999874        358999999 99999999998        666555543

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=100.00  E-value=4.8e-60  Score=412.95  Aligned_cols=187  Identities=22%  Similarity=0.262  Sum_probs=166.8

Q ss_pred             CCcceEEEecccCCCH--HHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCccccc
Q 026522            2 GRKFFVGGNWKCNGTP--EEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEI   79 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~--~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGei   79 (237)
                      ||+|+|+||||||++.  +++.+|++.+.....  ..+++++++|||++|..+++.+  ++.+++||||+.++|||||||
T Consensus         4 mr~~~i~~NwKmn~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~v~~~~--~i~v~aQdv~~~~~Ga~TGei   79 (225)
T 1hg3_A            4 LKEPIIAINFKTYIEATGKRALEIAKAAEKVYK--ETGVTIVVAPQLVDLRMIAESV--EIPVFAQHIDPIKPGSHTGHV   79 (225)
T ss_dssp             CCSSEEEEECTBCGGGSHHHHHHHHHHHHHHHH--TTCCEEEEECCHHHHHHHHHSC--SSCBEESCCCSCCSBSCTTCC
T ss_pred             CCCCEEEEECcccCCCCHHHHHHHHHHHHhhcc--ccCCcEEEeCCHHHHHHHHHhc--CCceeeeeCCcccCCCccCcc
Confidence            6999999999999875  999999998865321  1468999999999999998765  789999999999999999999


Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      |+.||+++||+|||+||||||.+|+|    +++|++.|+++||+||+||||++|++.               +.   ..+
T Consensus        80 s~~~l~~~Ga~~VllghseRR~~~~e----~~~k~~~A~~~GL~~ivcVge~~e~~~---------------~~---~~~  137 (225)
T 1hg3_A           80 LPEAVKEAGAVGTLLNHSENRMILAD----LEAAIRRAEEVGLMTMVCSNNPAVSAA---------------VA---ALN  137 (225)
T ss_dssp             CHHHHHHTTCCEEEESCGGGCCBHHH----HHHHHHHHHHHTCEEEEEESSHHHHHH---------------HH---TTC
T ss_pred             cHHHHHHcCCCEEEECcchhcCCHHH----HHHHHHHHHHCCCEEEEEeCCHHHHHH---------------Hh---cCC
Confidence            99999999999999999999999998    899999999999999999999987631               22   234


Q ss_pred             CeEEEEcccccccCC---CCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          160 NIVLAYEPVWAIGTG---KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG---~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      +.+|||||+||||||   +++++++++++|++||++         .++++||||| ||++.|..+++.
T Consensus       138 ~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~---------~~~~~ilygg-sV~~~n~~~~~~  195 (225)
T 1hg3_A          138 PDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKV---------NPEVKVLCGA-GISTGEDVKKAI  195 (225)
T ss_dssp             CSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHH---------CTTSEEEEES-SCCSHHHHHHHH
T ss_pred             CCEEEEeChhhhccCCCCCCCChhHHHHHHHHHHhc---------cCCCEEEEeC-CCCcHHHHHHHH
Confidence            579999999999999   899999999999999986         2458999999 999999999775

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=100.00  E-value=9.8e-60  Score=411.20  Aligned_cols=187  Identities=29%  Similarity=0.305  Sum_probs=165.7

Q ss_pred             CCcceEEEecccCCCH--HHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCccccc
Q 026522            2 GRKFFVGGNWKCNGTP--EEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEI   79 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~--~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGei   79 (237)
                      ||+|+|+||||||++.  +++.+|++.+.....  ..+++++++|||++|..+++.+  ++.+++||||+.++|||||||
T Consensus         1 mr~~~i~~NwKmn~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~L~~v~~~~--~i~v~aQdv~~~~~Ga~TGei   76 (226)
T 1w0m_A            1 MRLPILIINFKAYGEAAGKRAVELAKAAERAAR--ELGVNIVVAPNHLELGLVSQSV--DIPVYAQGADVEAGGAHTAHV   76 (226)
T ss_dssp             CCSSEEEEECTBCGGGSTHHHHHHHHHHHHHHH--HHTCEEEEECCGGGHHHHHTTC--SSCBEESCCSBSSCSSCTTCC
T ss_pred             CCCCEEEEECcccCCCCHHHHHHHHHHHHhccc--ccCCcEEEeCCHHHHHHHHHhc--CCceEeeECChhhCCCccCCC
Confidence            4899999999999875  999999998865311  1358999999999999988765  789999999999999999999


Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      |+.||+++||+|||+||||||.+|+|    +++|++.|+++||+||+||||++|++.               +..   ..
T Consensus        77 s~~~l~~~Ga~~VllghseRR~~~~e----~~~k~~~A~~~GL~~ivcVge~~e~~~---------------~~~---~~  134 (226)
T 1w0m_A           77 SLENIKEAGGSGVILNHSEAPLKLND----LARLVAKAKSLGLDVVVCAPDPRTSLA---------------AAA---LG  134 (226)
T ss_dssp             BHHHHHHHTCCEEEECCTTSCCBHHH----HHHHHHHHHHTTCEEEEEESSHHHHHH---------------HHH---TC
T ss_pred             CHHHHHHcCCCEEEEeeeeccCCHHH----HHHHHHHHHHCCCEEEEEeCCHHHHHH---------------Hhc---CC
Confidence            99999999999999999999999998    899999999999999999999987631               222   34


Q ss_pred             CeEEEEcccccccCC---CCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          160 NIVLAYEPVWAIGTG---KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG---~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      +.+|||||+||||||   +++++++++++|++||++         .++++||||| ||++.|..+++.
T Consensus       135 ~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~---------~~~~~ilygg-sV~~~n~~~~~~  192 (226)
T 1w0m_A          135 PHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRH---------FPEVSVITGA-GIESGDDVAAAL  192 (226)
T ss_dssp             CSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHH---------CTTSEEEEES-SCCSHHHHHHHH
T ss_pred             CCEEEEcChhhhccCCCCCCCChhHHHHHHHHHHhc---------cCCCEEEEeC-CCCcHHHHHHHH
Confidence            579999999999999   789999999999999986         2458999999 999999999775

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=2.1e-46  Score=324.54  Aligned_cols=182  Identities=21%  Similarity=0.291  Sum_probs=146.8

Q ss_pred             eEEEecccCCCH--HHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHH
Q 026522            6 FVGGNWKCNGTP--EEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEM   83 (237)
Q Consensus         6 ~i~~NWKmn~~~--~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~m   83 (237)
                      +|+||||||++.  +++.+|++.+.....  ..+++++++||+++|..+++.+  ++.++|||+++.++|+||||+|+.|
T Consensus         2 ~i~~NwKm~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~v~~~~--~~~v~aqd~~~~~~ga~tGei~~~~   77 (219)
T 2h6r_A            2 VIVINYKTYNESIGNRGLEIAKIAEKVSE--ESGITIGVAPQFVDLRMIVENV--NIPVYAQHIDNINPGSHTGHILAEA   77 (219)
T ss_dssp             CEEEECTTCGGGSTHHHHHHHHHHHHHHH--HHTCCEEEECCTTTHHHHHHHC--CSCBEESCCCSCCSBSCTTCCCHHH
T ss_pred             EEEEECccCCCCCHHHHHHHHHHHHhccc--ccCCcEEEECCHHHHHHHHHHc--CCcEEEEECChhhcCCccCchHHHH
Confidence            889999999875  999999998865311  1358999999999999998775  7889999999999999999999999


Q ss_pred             HHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEE
Q 026522           84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVL  163 (237)
Q Consensus        84 Lkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiI  163 (237)
                      ++++||++|++||||||..++|    +++|++.|.++||.||+||+++.+.+.               +..   ....+|
T Consensus        78 ~~~~Gad~Vll~~ser~l~~~e----~~~~~~~a~~~Gl~~iv~v~~~~e~~~---------------~~~---~~~~~i  135 (219)
T 2h6r_A           78 IKDCGCKGTLINHSEKRMLLAD----IEAVINKCKNLGLETIVCTNNINTSKA---------------VAA---LSPDCI  135 (219)
T ss_dssp             HHHHTCCEEEESBTTBCCBHHH----HHHHHHHHHHHTCEEEEEESSSHHHHH---------------HTT---TCCSEE
T ss_pred             HHHcCCCEEEECCccccCCHHH----HHHHHHHHHHCCCeEEEEeCCchHHHH---------------HHh---CCCCEE
Confidence            9999999999999999999877    788889999999999999999976421               121   245689


Q ss_pred             EEcccccccCC---CCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH
Q 026522          164 AYEPVWAIGTG---KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL  223 (237)
Q Consensus       164 AYEPvWAIGtG---~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~  223 (237)
                      +|||+|+||||   +++++++++++++.+|+.         ..++||+||| ||++.|..+.+
T Consensus       136 ~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~---------~~~~~ii~gg-GI~~~~~~~~~  188 (219)
T 2h6r_A          136 AVEPPELIGTGIPVSKANPEVVEGTVRAVKEI---------NKDVKVLCGA-GISKGEDVKAA  188 (219)
T ss_dssp             EECCCC--------------CSHHHHHHHHHH---------CTTCEEEECS-SCCSHHHHHHH
T ss_pred             EEEeccccccCCCCccCCHHHHHHHHHHHHhc---------cCCCeEEEEe-CcCcHHHHHHH
Confidence            99999999999   899999999999999975         2358999999 99987777753

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=99.29  E-value=2e-11  Score=108.97  Aligned_cols=141  Identities=17%  Similarity=0.023  Sum_probs=103.4

Q ss_pred             CCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEeccc--------------ccccccccCHHHHHHHHHHHHHCCCe
Q 026522           58 PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHS--------------ERRLILNELNEFVGDKVAYALSQGLK  123 (237)
Q Consensus        58 ~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHS--------------ERR~~f~Etd~~V~~Kv~~al~~gl~  123 (237)
                      .++.|-|| ++..++|.+||.+- +.||+.|++.| ++||              |+|.-|.+-.+.|    +.|.+.||.
T Consensus        93 ~~iPV~Ag-v~~~DP~~~~g~~L-e~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I----~~A~~~gL~  165 (286)
T 2p10_A           93 RHTPVLAG-VNGTDPFMVMSTFL-RELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMI----AEAHKLDLL  165 (286)
T ss_dssp             SSSCEEEE-ECTTCTTCCHHHHH-HHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHH----HHHHHTTCE
T ss_pred             CCCCEEEE-ECCcCCCcCHHHHH-HHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHH----HHHHHCCCe
Confidence            57889999 99999999999999 99999999999 9999              9999888877777    999999999


Q ss_pred             EEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEccc----ccccCCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 026522          124 VIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPV----WAIGTGKVATPAQAQEVHFELRKWLLANTSP  199 (237)
Q Consensus       124 pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPv----WAIGtG~~as~e~i~~~~~~IR~~l~~~~~~  199 (237)
                      .++|+-...+.+              +..+    ..+.+|+.||.    -.||+|.+.|.++..+.++.+.+..++    
T Consensus       166 Ti~~v~~~eeA~--------------amA~----agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~----  223 (286)
T 2p10_A          166 TTPYVFSPEDAV--------------AMAK----AGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAART----  223 (286)
T ss_dssp             ECCEECSHHHHH--------------HHHH----HTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHH----
T ss_pred             EEEecCCHHHHH--------------HHHH----cCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHH----
Confidence            999998764432              2322    35789999999    699999887766644444444444333    


Q ss_pred             cccCcccEEEcCCC--CChhhHHHHHHccccc
Q 026522          200 EIAAATRIIYGGIS--INVSHVLVHLLLSFGC  229 (237)
Q Consensus       200 ~~a~~i~ILYGG~S--V~~~Na~~~~~~~~~~  229 (237)
                       +++++.+|.|| +  .+|+-+...+...-||
T Consensus       224 -vnpdvivLc~g-GpIstpeDv~~~l~~t~G~  253 (286)
T 2p10_A          224 -IRDDIIILSHG-GPIANPEDARFILDSCQGC  253 (286)
T ss_dssp             -HCSCCEEEEES-TTCCSHHHHHHHHHHCTTC
T ss_pred             -hCCCcEEEecC-CCCCCHHHHHHHHhcCCCc
Confidence             25567777554 3  5889999888774333

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=96.83  E-value=0.0027  Score=56.08  Aligned_cols=123  Identities=13%  Similarity=0.176  Sum_probs=84.5

Q ss_pred             cccCcCcccc---cCHHHHHh--CCCCeEEe-cccccccccccCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCcH
Q 026522           69 VKKGGAFTGE---ISAEMLVN--LEIPWVIL-GHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGSTM  141 (237)
Q Consensus        69 ~~~~GA~TGe---iSa~mLkd--~G~~~viI-GHSERR~~f~Etd~~V~~Kv~~al~~gl~pI-vCiGEt~e~r~~g~~~  141 (237)
                      +...|++|-|   -.+.|.+|  .|.+|+=+ =|||+|..+.+..+++ +..+...+.|++++ +|......-       
T Consensus        78 pNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv-~aa~~L~~~Gf~Vlpy~~dd~~~a-------  149 (265)
T 1wv2_A           78 PNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETL-KAAEQLVKDGFDVMVYTSDDPIIA-------  149 (265)
T ss_dssp             EECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHH-HHHHHHHTTTCEEEEEECSCHHHH-------
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHH-------
Confidence            4578999987   45778888  46777744 5899999999988776 55666677799999 899876322       


Q ss_pred             HHHHHHHHHHHhccCCCCCeEEEEccc-ccccCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-Chhh
Q 026522          142 DVVAAQTKAIADRVSSWSNIVLAYEPV-WAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSH  218 (237)
Q Consensus       142 ~vl~~Ql~~~l~~i~~~~~iiIAYEPv-WAIGtG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~N  218 (237)
                          +.    +..   ....+|  +|. --||||+.. +++.+    +.|++.          .++||+.+| ++ +|+-
T Consensus       150 ----kr----l~~---~G~~aV--mPlg~pIGsG~Gi~~~~lI----~~I~e~----------~~vPVI~eG-GI~TPsD  201 (265)
T 1wv2_A          150 ----RQ----LAE---IGCIAV--MPLAGLIGSGLGICNPYNL----RIILEE----------AKVPVLVDA-GVGTASD  201 (265)
T ss_dssp             ----HH----HHH---SCCSEE--EECSSSTTCCCCCSCHHHH----HHHHHH----------CSSCBEEES-CCCSHHH
T ss_pred             ----HH----HHH---hCCCEE--EeCCccCCCCCCcCCHHHH----HHHHhc----------CCCCEEEeC-CCCCHHH
Confidence                12    221   234444  773 349999765 65555    333331          248999998 76 5799


Q ss_pred             HHHHHHccc
Q 026522          219 VLVHLLLSF  227 (237)
Q Consensus       219 a~~~~~~~~  227 (237)
                      +...+.+|.
T Consensus       202 Aa~AmeLGA  210 (265)
T 1wv2_A          202 AAIAMELGC  210 (265)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHcCC
Confidence            999888754

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=96.79  E-value=0.0031  Score=55.32  Aligned_cols=112  Identities=21%  Similarity=0.196  Sum_probs=73.8

Q ss_pred             ccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEE-EeCCcHHHHhcCCcHHHHHHHHHHHHhccC
Q 026522           78 EISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA-CVGETLEQREAGSTMDVVAAQTKAIADRVS  156 (237)
Q Consensus        78 eiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIv-CiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~  156 (237)
                      |-=.+.+++.|++.+||-+    .-+.|.++..    +.+.++||.+|+ |--.|.++|            ++.+.+   
T Consensus       106 e~F~~~~~~aGvdG~IipD----LP~eE~~~~~----~~~~~~Gl~~I~lvaP~t~~eR------------i~~ia~---  162 (252)
T 3tha_A          106 EKFVKKAKSLGICALIVPE----LSFEESDDLI----KECERYNIALITLVSVTTPKER------------VKKLVK---  162 (252)
T ss_dssp             HHHHHHHHHTTEEEEECTT----CCGGGCHHHH----HHHHHTTCEECEEEETTSCHHH------------HHHHHT---
T ss_pred             HHHHHHHHHcCCCEEEeCC----CCHHHHHHHH----HHHHHcCCeEEEEeCCCCcHHH------------HHHHHH---
Confidence            4456889999999999999    3466777776    888999999987 655554544            333333   


Q ss_pred             CCCCeEEEEccccccc-CCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHcc
Q 026522          157 SWSNIVLAYEPVWAIG-TGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLS  226 (237)
Q Consensus       157 ~~~~iiIAYEPvWAIG-tG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~  226 (237)
                       ..+-.|-|-+  ..| ||... .++++.+..+.||+.          .++|+++|+ ++ +|++++++....
T Consensus       163 -~a~gFiY~Vs--~~GvTG~~~~~~~~~~~~v~~vr~~----------~~~Pv~vGf-GIst~e~a~~~~~~A  221 (252)
T 3tha_A          163 -HAKGFIYLLA--SIGITGTKSVEEAILQDKVKEIRSF----------TNLPIFVGF-GIQNNQDVKRMRKVA  221 (252)
T ss_dssp             -TCCSCEEEEC--CSCSSSCSHHHHHHHHHHHHHHHTT----------CCSCEEEES-SCCSHHHHHHHTTTS
T ss_pred             -hCCCeEEEEe--cCCCCCcccCCCHHHHHHHHHHHHh----------cCCcEEEEc-CcCCHHHHHHHHhcC
Confidence             2333455544  445 66542 233344444444432          247999999 99 899999876543

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=96.67  E-value=0.1  Score=44.14  Aligned_cols=114  Identities=13%  Similarity=0.133  Sum_probs=62.4

Q ss_pred             ccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCC
Q 026522           78 EISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS  157 (237)
Q Consensus        78 eiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~  157 (237)
                      +-.++.+.+.|++++++| .+-   ..+    ..+=++.+.+.|+.+++++.-+       ...+.+    +......  
T Consensus        98 ~~~~~~~~~~Gad~v~~~-~~~---~~~----~~~~~~~~~~~g~~~~~~i~~~-------t~~e~~----~~~~~~~--  156 (248)
T 1geq_A           98 RNFLAEAKASGVDGILVV-DLP---VFH----AKEFTEIAREEGIKTVFLAAPN-------TPDERL----KVIDDMT--  156 (248)
T ss_dssp             HHHHHHHHHHTCCEEEET-TCC---GGG----HHHHHHHHHHHTCEEEEEECTT-------CCHHHH----HHHHHHC--
T ss_pred             HHHHHHHHHCCCCEEEEC-CCC---hhh----HHHHHHHHHHhCCCeEEEECCC-------CHHHHH----HHHHhcC--
Confidence            446788899999999996 332   111    2233456667899999988642       111222    2222221  


Q ss_pred             CCCeEEEEccccccc-CCCC-CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCCh-hhHHHHHHccc
Q 026522          158 WSNIVLAYEPVWAIG-TGKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINV-SHVLVHLLLSF  227 (237)
Q Consensus       158 ~~~iiIAYEPvWAIG-tG~~-as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~-~Na~~~~~~~~  227 (237)
                       +. +|-.-++  -| ||.. ..+....+..+.+|+.    .      ++||+.|| +|+. +|+.+++..|.
T Consensus       157 -d~-~i~~~~~--~G~~g~~~~~~~~~~~~i~~l~~~----~------~~pi~~~G-GI~~~e~i~~~~~~Ga  214 (248)
T 1geq_A          157 -TG-FVYLVSL--YGTTGAREEIPKTAYDLLRRAKRI----C------RNKVAVGF-GVSKREHVVSLLKEGA  214 (248)
T ss_dssp             -SS-EEEEECC--C-------CCCHHHHHHHHHHHHH----C------SSCEEEES-CCCSHHHHHHHHHTTC
T ss_pred             -CC-eEEEEEC--CccCCCCCCCChhHHHHHHHHHhh----c------CCCEEEEe-ecCCHHHHHHHHHcCC
Confidence             12 2323444  23 2322 1112223334444442    1      48999999 9998 99999877653

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=96.09  E-value=0.061  Score=47.40  Aligned_cols=109  Identities=17%  Similarity=0.157  Sum_probs=67.9

Q ss_pred             ccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCcHHHHHHHHHHHHhccC
Q 026522           78 EISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGSTMDVVAAQTKAIADRVS  156 (237)
Q Consensus        78 eiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI-vCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~  156 (237)
                      |-=++.+++.|++.+|+.    -.-+.|.++.+    +.+.++|+.+| +|--.+.++|            ++.+.+.  
T Consensus       115 ~~f~~~~~~aGvdGvIip----Dlp~ee~~~~~----~~~~~~gl~~I~lvap~t~~er------------i~~i~~~--  172 (271)
T 3nav_A          115 DDFYQRCQKAGVDSVLIA----DVPTNESQPFV----AAAEKFGIQPIFIAPPTASDET------------LRAVAQL--  172 (271)
T ss_dssp             HHHHHHHHHHTCCEEEET----TSCGGGCHHHH----HHHHHTTCEEEEEECTTCCHHH------------HHHHHHH--
T ss_pred             HHHHHHHHHCCCCEEEEC----CCCHHHHHHHH----HHHHHcCCeEEEEECCCCCHHH------------HHHHHHH--
Confidence            445888999999999995    23345666666    88899999988 6655554444            3333331  


Q ss_pred             CCCCeEEEEccccccc-CCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHH
Q 026522          157 SWSNIVLAYEPVWAIG-TGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHL  223 (237)
Q Consensus       157 ~~~~iiIAYEPvWAIG-tG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~  223 (237)
                        ..-.|.|-.  ..| ||... .++++.+.++.||+.          .++|++.|+ ++ +|+++++.+
T Consensus       173 --~~gfiY~vs--~~GvTG~~~~~~~~~~~~v~~vr~~----------~~~Pv~vGf-GIst~e~~~~~~  227 (271)
T 3nav_A          173 --GKGYTYLLS--RAGVTGAETKANMPVHALLERLQQF----------DAPPALLGF-GISEPAQVKQAI  227 (271)
T ss_dssp             --CCSCEEECC--CC--------CCHHHHHHHHHHHHT----------TCCCEEECS-SCCSHHHHHHHH
T ss_pred             --CCCeEEEEe--ccCCCCcccCCchhHHHHHHHHHHh----------cCCCEEEEC-CCCCHHHHHHHH
Confidence              122344433  445 55542 356667777777753          147999999 99 599999543

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=95.78  E-value=0.077  Score=44.75  Aligned_cols=112  Identities=14%  Similarity=0.047  Sum_probs=69.7

Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCC-cHHHHhcCCcHHHHHHHHHHHHh---ccC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGE-TLEQREAGSTMDVVAAQTKAIAD---RVS  156 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE-t~e~r~~g~~~~vl~~Ql~~~l~---~i~  156 (237)
                      .++..+.|++++.+- .|      ++++.+.+-++.+.+.|+.+++-+.- |..+            .++..++   .. 
T Consensus        80 i~~~~~agad~v~vH-~~------~~~~~~~~~~~~i~~~g~~igv~~~p~t~~e------------~~~~~~~~~~~~-  139 (228)
T 1h1y_A           80 VEPLAKAGASGFTFH-IE------VSRDNWQELIQSIKAKGMRPGVSLRPGTPVE------------EVFPLVEAENPV-  139 (228)
T ss_dssp             HHHHHHHTCSEEEEE-GG------GCTTTHHHHHHHHHHTTCEEEEEECTTSCGG------------GGHHHHHSSSCC-
T ss_pred             HHHHHHcCCCEEEEC-CC------CcccHHHHHHHHHHHcCCCEEEEEeCCCCHH------------HHHHHHhcCCCC-
Confidence            788888999999763 22      12222134456777889999988842 2111            1233333   22 


Q ss_pred             CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccc
Q 026522          157 SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSF  227 (237)
Q Consensus       157 ~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~  227 (237)
                          ..|.+=++...++|....++..+. .+.+|+..         .++||.-+| ++|++|+.++..-|.
T Consensus       140 ----d~vl~~sv~pg~~g~~~~~~~l~~-i~~~~~~~---------~~~pi~v~G-GI~~~ni~~~~~aGa  195 (228)
T 1h1y_A          140 ----ELVLVMTVEPGFGGQKFMPEMMEK-VRALRKKY---------PSLDIEVDG-GLGPSTIDVAASAGA  195 (228)
T ss_dssp             ----SEEEEESSCTTCSSCCCCGGGHHH-HHHHHHHC---------TTSEEEEES-SCSTTTHHHHHHHTC
T ss_pred             ----CEEEEEeecCCCCcccCCHHHHHH-HHHHHHhc---------CCCCEEEEC-CcCHHHHHHHHHcCC
Confidence                256666666666776666655544 45555542         247999999 999999999766543

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=95.68  E-value=0.093  Score=46.06  Aligned_cols=109  Identities=14%  Similarity=0.135  Sum_probs=65.3

Q ss_pred             ccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCcHHHHHHHHHHHHhccC
Q 026522           78 EISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGSTMDVVAAQTKAIADRVS  156 (237)
Q Consensus        78 eiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI-vCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~  156 (237)
                      |-=.+.+++.|++.+|+.    -.-+.|.++.+    +.+.++|+.+| +|--.|.++|            ++.+.+.. 
T Consensus       113 e~f~~~~~~aGvdgvii~----Dlp~ee~~~~~----~~~~~~gl~~i~liaP~t~~er------------i~~i~~~~-  171 (267)
T 3vnd_A          113 DEFYTKAQAAGVDSVLIA----DVPVEESAPFS----KAAKAHGIAPIFIAPPNADADT------------LKMVSEQG-  171 (267)
T ss_dssp             HHHHHHHHHHTCCEEEET----TSCGGGCHHHH----HHHHHTTCEEECEECTTCCHHH------------HHHHHHHC-
T ss_pred             HHHHHHHHHcCCCEEEeC----CCCHhhHHHHH----HHHHHcCCeEEEEECCCCCHHH------------HHHHHHhC-
Confidence            445788999999999994    23345666666    88899999988 6655554433            33444321 


Q ss_pred             CCCCeEEEEccccccc-CCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHH
Q 026522          157 SWSNIVLAYEPVWAIG-TGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHL  223 (237)
Q Consensus       157 ~~~~iiIAYEPvWAIG-tG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~  223 (237)
                        ..+ |-| .. ..| ||... .++++.+.++.+|+.          .++||++|| +++ |+++++.+
T Consensus       172 --~gf-vY~-vS-~~GvTG~~~~~~~~~~~~v~~vr~~----------~~~pv~vGf-GI~~~e~~~~~~  225 (267)
T 3vnd_A          172 --EGY-TYL-LS-RAGVTGTESKAGEPIENILTQLAEF----------NAPPPLLGF-GIAEPEQVRAAI  225 (267)
T ss_dssp             --CSC-EEE-SC-CCCCC--------CHHHHHHHHHTT----------TCCCEEECS-SCCSHHHHHHHH
T ss_pred             --CCc-EEE-Ee-cCCCCCCccCCcHHHHHHHHHHHHh----------cCCCEEEEC-CcCCHHHHHHHH
Confidence              122 322 21 223 66553 345556666666642          248999999 995 99999533

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=95.50  E-value=0.055  Score=46.06  Aligned_cols=118  Identities=12%  Similarity=-0.007  Sum_probs=69.9

Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeC-CcHHHHhcCCcHHHHHHHHHHHHhccCCC
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVG-ETLEQREAGSTMDVVAAQTKAIADRVSSW  158 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiG-Et~e~r~~g~~~~vl~~Ql~~~l~~i~~~  158 (237)
                      -.++..++|++++.++- |.=     ..+...+-++.+.+.|+.+.+-+. .|..++            ++..++..   
T Consensus        77 ~i~~~~~aGadgv~vh~-e~~-----~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~------------~~~~~~~~---  135 (230)
T 1tqj_A           77 YVEDFAKAGADIISVHV-EHN-----ASPHLHRTLCQIRELGKKAGAVLNPSTPLDF------------LEYVLPVC---  135 (230)
T ss_dssp             THHHHHHHTCSEEEEEC-STT-----TCTTHHHHHHHHHHTTCEEEEEECTTCCGGG------------GTTTGGGC---
T ss_pred             HHHHHHHcCCCEEEECc-ccc-----cchhHHHHHHHHHHcCCcEEEEEeCCCcHHH------------HHHHHhcC---
Confidence            46899999999998872 100     222345566888899999999883 232322            12223321   


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccc
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSF  227 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~  227 (237)
                       . .|.+=++...-+|....+.- -+-.+.+|+.+.+.     +.++||.-+| ++|++|+.++..-|.
T Consensus       136 -D-~v~~msv~pg~ggq~~~~~~-~~~i~~lr~~~~~~-----~~~~~I~v~G-GI~~~~~~~~~~aGa  195 (230)
T 1tqj_A          136 -D-LILIMSVNPGFGGQSFIPEV-LPKIRALRQMCDER-----GLDPWIEVDG-GLKPNNTWQVLEAGA  195 (230)
T ss_dssp             -S-EEEEESSCC----CCCCGGG-HHHHHHHHHHHHHH-----TCCCEEEEES-SCCTTTTHHHHHHTC
T ss_pred             -C-EEEEEEeccccCCccCcHHH-HHHHHHHHHHHHhc-----CCCCcEEEEC-CcCHHHHHHHHHcCC
Confidence             2 45444555443444444433 33445666665331     2358999999 999999999876553

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=95.38  E-value=0.35  Score=42.06  Aligned_cols=169  Identities=8%  Similarity=-0.008  Sum_probs=105.9

Q ss_pred             ceEEEecccC----CC---HHHHHHHHHHHhcCCCCCCCCceEE-----EcCccccHHHHHHhcCCCcEEeeeccccccC
Q 026522            5 FFVGGNWKCN----GT---PEEVKKIVSVLNEGQVPSSDVVEVV-----VSPPFVFLGLVKSSLRPGFHVAAQNCWVKKG   72 (237)
Q Consensus         5 ~~i~~NWKmn----~~---~~~~~~~~~~l~~~~~~~~~~~~v~-----i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~   72 (237)
                      +-|++|.|-.    +.   .....++++...+. .   ..+.|.     +.+++.+|..+.+..  ++.|-.||     .
T Consensus        41 ~~vIaE~K~aSPSkG~i~~~~~~~~iA~~y~~~-A---~~IsVlTd~~~F~gs~~dL~~ir~~v--~lPvLrKD-----f  109 (251)
T 1i4n_A           41 VKIIAEFKKASPSAGDINADASLEDFIRMYDEL-A---DAISILTEKHYFKGDPAFVRAARNLT--CRPILAKD-----F  109 (251)
T ss_dssp             CEEEEEECSBCSSSCBSCTTCCHHHHHHHHHHH-C---SEEEEECCCSSSCCCTHHHHHHHTTC--CSCEEEEC-----C
T ss_pred             ceEEEeecCCCCCCCccCCCCCHHHHHHHHHHh-C---CceEEEecccccCCCHHHHHHHHHhC--CCCEEEee-----C
Confidence            5688999965    11   01233444444432 1   245554     568899999887754  56677888     2


Q ss_pred             cCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 026522           73 GAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA  152 (237)
Q Consensus        73 GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l  152 (237)
                      + .++-- ...++.+|++.|++-|+-+      +++.+..=++.|.+.||.+++|+-...|              ++.++
T Consensus       110 i-~~~~q-i~ea~~~GAD~ilLi~a~l------~~~~l~~l~~~a~~lGl~~lvEv~~~eE--------------~~~A~  167 (251)
T 1i4n_A          110 Y-IDTVQ-VKLASSVGADAILIIARIL------TAEQIKEIYEAAEELGMDSLVEVHSRED--------------LEKVF  167 (251)
T ss_dssp             C-CSTHH-HHHHHHTTCSEEEEEGGGS------CHHHHHHHHHHHHTTTCEEEEEECSHHH--------------HHHHH
T ss_pred             C-CCHHH-HHHHHHcCCCEEEEecccC------CHHHHHHHHHHHHHcCCeEEEEeCCHHH--------------HHHHH
Confidence            2 22222 4558999999999999943      3356777779999999999999975422              33333


Q ss_pred             hccCCC-CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHc
Q 026522          153 DRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLL  225 (237)
Q Consensus       153 ~~i~~~-~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~  225 (237)
                      +    . +..+|..++.=..+.+  .+.+..   .+.++     .    +...+.++-+| +++ |+.+..+...
T Consensus       168 ~----l~g~~iIGinnr~l~t~~--~d~~~~---~~l~~-----~----ip~~~~vIaEs-GI~t~edv~~~~~~  223 (251)
T 1i4n_A          168 S----VIRPKIIGINTRDLDTFE--IKKNVL---WELLP-----L----VPDDTVVVAES-GIKDPRELKDLRGK  223 (251)
T ss_dssp             T----TCCCSEEEEECBCTTTCC--BCTTHH---HHHGG-----G----SCTTSEEEEES-CCCCGGGHHHHTTT
T ss_pred             h----cCCCCEEEEeCcccccCC--CCHHHH---HHHHH-----h----CCCCCEEEEeC-CCCCHHHHHHHHHh
Confidence            2    3 4557888886554432  232222   22221     1    12346788899 996 9999987665

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=95.25  E-value=0.24  Score=43.64  Aligned_cols=146  Identities=10%  Similarity=0.064  Sum_probs=88.6

Q ss_pred             CceEEEcCccc-----cHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHH
Q 026522           37 VVEVVVSPPFV-----FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVG  111 (237)
Q Consensus        37 ~~~v~i~Pp~~-----~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~  111 (237)
                      .+.|+--|.|.     +|..+.+..  ++.|-.+|.-       +=+.-...++++|++.|+++|+-.      +++.+.
T Consensus        95 ~IsVltd~~~f~Gs~~~L~~ir~~v--~lPVl~Kdfi-------~d~~qi~ea~~~GAD~VlLi~a~L------~~~~l~  159 (272)
T 3tsm_A           95 CLSVLTDTPSFQGAPEFLTAARQAC--SLPALRKDFL-------FDPYQVYEARSWGADCILIIMASV------DDDLAK  159 (272)
T ss_dssp             EEEEECCSTTTCCCHHHHHHHHHTS--SSCEEEESCC-------CSTHHHHHHHHTTCSEEEEETTTS------CHHHHH
T ss_pred             EEEEeccccccCCCHHHHHHHHHhc--CCCEEECCcc-------CCHHHHHHHHHcCCCEEEEccccc------CHHHHH
Confidence            35565555554     666665543  4555566632       111136678899999999999944      466777


Q ss_pred             HHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 026522          112 DKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK  191 (237)
Q Consensus       112 ~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~  191 (237)
                      .=++.|.+.||.+++|+-.. +|             +..+++    ....+|..-+.-.    ++.+++ .+...+.+ +
T Consensus       160 ~l~~~a~~lGl~~lvevh~~-eE-------------l~~A~~----~ga~iIGinnr~l----~t~~~d-l~~~~~L~-~  215 (272)
T 3tsm_A          160 ELEDTAFALGMDALIEVHDE-AE-------------MERALK----LSSRLLGVNNRNL----RSFEVN-LAVSERLA-K  215 (272)
T ss_dssp             HHHHHHHHTTCEEEEEECSH-HH-------------HHHHTT----SCCSEEEEECBCT----TTCCBC-THHHHHHH-H
T ss_pred             HHHHHHHHcCCeEEEEeCCH-HH-------------HHHHHh----cCCCEEEECCCCC----ccCCCC-hHHHHHHH-H
Confidence            77889999999999999543 22             333332    2233444433311    222222 22222222 2


Q ss_pred             HHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHcccccc
Q 026522          192 WLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLSFGCF  230 (237)
Q Consensus       192 ~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~~~~~  230 (237)
                      .+        ..+++++.+| ++ +|+++..+...|+-++
T Consensus       216 ~i--------p~~~~vIaes-GI~t~edv~~l~~~Ga~gv  246 (272)
T 3tsm_A          216 MA--------PSDRLLVGES-GIFTHEDCLRLEKSGIGTF  246 (272)
T ss_dssp             HS--------CTTSEEEEES-SCCSHHHHHHHHTTTCCEE
T ss_pred             hC--------CCCCcEEEEC-CCCCHHHHHHHHHcCCCEE
Confidence            11        2357999999 99 9999999888876554

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=95.18  E-value=0.1  Score=44.51  Aligned_cols=115  Identities=14%  Similarity=0.005  Sum_probs=72.5

Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCC-cHHHHhcCCcHHHHHHHHHHHHhccCCC
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGE-TLEQREAGSTMDVVAAQTKAIADRVSSW  158 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE-t~e~r~~g~~~~vl~~Ql~~~l~~i~~~  158 (237)
                      -.+++.+.|++++.+ |.|-       .+.+.+-++.+.+.|+.+.+-+-- |..            ++++.+++.+   
T Consensus        79 ~i~~~~~aGad~itv-H~Ea-------~~~~~~~i~~i~~~G~k~gval~p~t~~------------e~l~~~l~~~---  135 (228)
T 3ovp_A           79 WVKPMAVAGANQYTF-HLEA-------TENPGALIKDIRENGMKVGLAIKPGTSV------------EYLAPWANQI---  135 (228)
T ss_dssp             GHHHHHHHTCSEEEE-EGGG-------CSCHHHHHHHHHHTTCEEEEEECTTSCG------------GGTGGGGGGC---
T ss_pred             HHHHHHHcCCCEEEE-ccCC-------chhHHHHHHHHHHcCCCEEEEEcCCCCH------------HHHHHHhccC---
Confidence            368899999999999 6553       122445557888899999888852 211            1222333322   


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF  230 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~  230 (237)
                       . .|.+=.++.-.+|+...|+..++ ++.+|+.    .     .+++|.-.| +|+++|+.++..-|.-++
T Consensus       136 -D-~Vl~msv~pGf~Gq~f~~~~l~k-i~~lr~~----~-----~~~~I~VdG-GI~~~t~~~~~~aGAd~~  194 (228)
T 3ovp_A          136 -D-MALVMTVEPGFGGQKFMEDMMPK-VHWLRTQ----F-----PSLDIEVDG-GVGPDTVHKCAEAGANMI  194 (228)
T ss_dssp             -S-EEEEESSCTTTCSCCCCGGGHHH-HHHHHHH----C-----TTCEEEEES-SCSTTTHHHHHHHTCCEE
T ss_pred             -C-eEEEeeecCCCCCcccCHHHHHH-HHHHHHh----c-----CCCCEEEeC-CcCHHHHHHHHHcCCCEE
Confidence             1 23343444334677777776655 3445543    2     247899999 999999999877665443

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=95.14  E-value=0.065  Score=44.91  Aligned_cols=161  Identities=14%  Similarity=0.176  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHHHhcCCCCCCCCceEEEcCccc-----cHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCCC
Q 026522           15 GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFV-----FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEI   89 (237)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~-----~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~   89 (237)
                      .+.+++.++++.+... .   +-+++.. |++.     .+..+++.. ++..+.. |++..+.    ++.-++++.++|+
T Consensus        16 ~~~~~~~~~~~~~~~~-v---d~ie~g~-~~~~~~G~~~i~~lr~~~-~~~~i~l-d~~l~d~----p~~~~~~~~~aGa   84 (218)
T 3jr2_A           16 TNLTDAVAVASNVASY-V---DVIEVGT-ILAFAEGMKAVSTLRHNH-PNHILVC-DMKTTDG----GAILSRMAFEAGA   84 (218)
T ss_dssp             SSHHHHHHHHHHHGGG-C---SEEEECH-HHHHHHTTHHHHHHHHHC-TTSEEEE-EEEECSC----HHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHhcCC-c---eEEEeCc-HHHHhcCHHHHHHHHHhC-CCCcEEE-EEeeccc----HHHHHHHHHhcCC
Confidence            5678888888876331 1   2245443 4321     223333221 2334443 6776643    3446799999999


Q ss_pred             CeEEecccccccccccCHHHHHHHHHHHHHCCCeEEE-EeCC-cHHHHhcCCcHHHHHHHHHHHHh-ccCCCCCeEE--E
Q 026522           90 PWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA-CVGE-TLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVL--A  164 (237)
Q Consensus        90 ~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIv-CiGE-t~e~r~~g~~~~vl~~Ql~~~l~-~i~~~~~iiI--A  164 (237)
                      +++.+ |.|-.      ++.+.+=++.+.++|+.+++ ++|= |.+             ++..+.+ ++   +-+++  +
T Consensus        85 d~i~v-h~~~~------~~~~~~~~~~~~~~g~~~~~d~l~~~T~~-------------~~~~~~~~g~---d~v~~~~~  141 (218)
T 3jr2_A           85 DWITV-SAAAH------IATIAACKKVADELNGEIQIEIYGNWTMQ-------------DAKAWVDLGI---TQAIYHRS  141 (218)
T ss_dssp             SEEEE-ETTSC------HHHHHHHHHHHHHHTCEEEEECCSSCCHH-------------HHHHHHHTTC---CEEEEECC
T ss_pred             CEEEE-ecCCC------HHHHHHHHHHHHHhCCccceeeeecCCHH-------------HHHHHHHcCc---cceeeeec
Confidence            99988 66642      23344444666778999987 7763 321             1222222 22   22221  2


Q ss_pred             EcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          165 YEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       165 YEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      |.|-.   .|.+.+++.++    .||+...        .++||.-+| +++|+|+.+++.-
T Consensus       142 ~~~~~---~g~~~~~~~l~----~i~~~~~--------~~~pi~v~G-GI~~~~~~~~~~a  186 (218)
T 3jr2_A          142 RDAEL---AGIGWTTDDLD----KMRQLSA--------LGIELSITG-GIVPEDIYLFEGI  186 (218)
T ss_dssp             HHHHH---HTCCSCHHHHH----HHHHHHH--------TTCEEEEES-SCCGGGGGGGTTS
T ss_pred             ccccc---CCCcCCHHHHH----HHHHHhC--------CCCCEEEEC-CCCHHHHHHHHHc
Confidence            33321   25555666654    4455421        248999999 9999999985443

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=95.09  E-value=0.035  Score=49.06  Aligned_cols=124  Identities=19%  Similarity=0.166  Sum_probs=78.2

Q ss_pred             cccCcCcc---cccCHHHHHhCC-CCeE-EecccccccccccCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCcHH
Q 026522           69 VKKGGAFT---GEISAEMLVNLE-IPWV-ILGHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGSTMD  142 (237)
Q Consensus        69 ~~~~GA~T---GeiSa~mLkd~G-~~~v-iIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI-vCiGEt~e~r~~g~~~~  142 (237)
                      +...|.+|   ..-.+.+-+|+. -+|+ |==|+|+|..+-+..+++ ++.+...+.|++++ +|....           
T Consensus        68 pntaG~~taeeAv~~a~lare~~gt~~iKlEvi~d~~~l~pD~~~tv-~aa~~L~k~Gf~Vlpy~~~D~-----------  135 (268)
T 2htm_A           68 PNTAGARTAEEAVRLARLGRLLTGERWVKLEVIPDPTYLLPDPLETL-KAAERLIEEDFLVLPYMGPDL-----------  135 (268)
T ss_dssp             EBCTTCCSHHHHHHHHHHHHHHHCCSEEBCCCCSCTTTTCCCHHHHH-HHHHHHHHTTCEECCEECSCH-----------
T ss_pred             CcccCCCCHHHHHHHHHhhhHhcCcceeeeeeccCccccCcCHHHHH-HHHHHHHHCCCEEeeccCCCH-----------
Confidence            45778888   555666667654 4454 234788888777766666 55666667799999 897443           


Q ss_pred             HHHHHHHHHHhccCCCCCeEEEEcccc-cccCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCc-ccEEEcCCCC-Chhh
Q 026522          143 VVAAQTKAIADRVSSWSNIVLAYEPVW-AIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAA-TRIIYGGISI-NVSH  218 (237)
Q Consensus       143 vl~~Ql~~~l~~i~~~~~iiIAYEPvW-AIGtG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~-i~ILYGG~SV-~~~N  218 (237)
                      .+.+.+..+       ...+|  +|.= -||||+.. +|+.+    +.|++.         ..+ +||+.+| ++ +|+-
T Consensus       136 ~~ak~l~~~-------G~~aV--mPlg~pIGsG~Gi~~~~~L----~~i~~~---------~~~~vPVI~~G-GI~tpsD  192 (268)
T 2htm_A          136 VLAKRLAAL-------GTATV--MPLAAPIGSGWGVRTRALL----ELFARE---------KASLPPVVVDA-GLGLPSH  192 (268)
T ss_dssp             HHHHHHHHH-------TCSCB--EEBSSSTTTCCCSTTHHHH----HHHHHT---------TTTSSCBEEES-CCCSHHH
T ss_pred             HHHHHHHhc-------CCCEE--EecCccCcCCcccCCHHHH----HHHHHh---------cCCCCeEEEeC-CCCCHHH
Confidence            122333331       23334  8843 49999876 44442    333321         123 7899998 87 4688


Q ss_pred             HHHHHHccc
Q 026522          219 VLVHLLLSF  227 (237)
Q Consensus       219 a~~~~~~~~  227 (237)
                      +...+.+|.
T Consensus       193 Aa~AmeLGA  201 (268)
T 2htm_A          193 AAEVMELGL  201 (268)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHcCC
Confidence            988887764

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=95.06  E-value=0.14  Score=43.88  Aligned_cols=107  Identities=15%  Similarity=0.096  Sum_probs=62.6

Q ss_pred             HHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeC-CcHHHHhcCCcHHHHHHHHHHHHhccCCCCCe
Q 026522           83 MLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVG-ETLEQREAGSTMDVVAAQTKAIADRVSSWSNI  161 (237)
Q Consensus        83 mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiG-Et~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~i  161 (237)
                      .+++.|++++++.-        ++.+.+.+=+..+.++|+..++=+. .+.++            .++.+....   .. 
T Consensus       113 ~a~~aGadgv~v~d--------~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e------------~~~~~~~~~---~g-  168 (262)
T 1rd5_A          113 KMKEAGVHGLIVPD--------LPYVAAHSLWSEAKNNNLELVLLTTPAIPED------------RMKEITKAS---EG-  168 (262)
T ss_dssp             HHHHTTCCEEECTT--------CBTTTHHHHHHHHHHTTCEECEEECTTSCHH------------HHHHHHHHC---CS-
T ss_pred             HHHHcCCCEEEEcC--------CChhhHHHHHHHHHHcCCceEEEECCCCCHH------------HHHHHHhcC---CC-
Confidence            39999999999842        1112244444678889998665333 22221            222322211   12 


Q ss_pred             EEEEccccccc-CCCC-CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHcc
Q 026522          162 VLAYEPVWAIG-TGKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLLS  226 (237)
Q Consensus       162 iIAYEPvWAIG-tG~~-as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~~  226 (237)
                      ++.+.++  -| ||.. ..+....+.++.+|+.          .++||+.|| +++ ++|+.+++..|
T Consensus       169 ~v~~~s~--~G~tG~~~~~~~~~~~~i~~v~~~----------~~~pI~vgG-GI~~~e~~~~~~~~G  223 (262)
T 1rd5_A          169 FVYLVSV--NGVTGPRANVNPRVESLIQEVKKV----------TNKPVAVGF-GISKPEHVKQIAQWG  223 (262)
T ss_dssp             CEEEECS--SCCBCTTSCBCTHHHHHHHHHHHH----------CSSCEEEES-CCCSHHHHHHHHHTT
T ss_pred             eEEEecC--CCCCCCCcCCCchHHHHHHHHHhh----------cCCeEEEEC-CcCCHHHHHHHHHcC
Confidence            3456675  35 5542 2233344455555543          148999999 999 99999987754

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=94.81  E-value=0.17  Score=41.52  Aligned_cols=170  Identities=17%  Similarity=0.158  Sum_probs=89.2

Q ss_pred             ceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCc-eEEEcCcc------ccHHHHHHhcCCCcEEeeeccccccCcCccc
Q 026522            5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVV-EVVVSPPF------VFLGLVKSSLRPGFHVAAQNCWVKKGGAFTG   77 (237)
Q Consensus         5 ~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~-~v~i~Pp~------~~L~~~~~~~~~~i~igAQnv~~~~~GA~TG   77 (237)
                      .++..++   .+.+++.++++.+...     -++ ++..  |+      ..+..+++.. +++.+.+ |.-..+.    .
T Consensus         3 li~a~D~---~~~~~~~~~~~~~~~~-----~diie~G~--p~~~~~g~~~i~~ir~~~-~~~~i~~-~~~~~~~----~   66 (211)
T 3f4w_A            3 LQLALDE---LTLPEAMVFMDKVVDD-----VDIIEVGT--PFLIREGVNAIKAIKEKY-PHKEVLA-DAKIMDG----G   66 (211)
T ss_dssp             EEEEECS---CCHHHHHHHHHHHGGG-----CSEEEECH--HHHHHHTTHHHHHHHHHC-TTSEEEE-EEEECSC----H
T ss_pred             EEEEeCC---CCHHHHHHHHHHhhcC-----ccEEEeCc--HHHHhccHHHHHHHHHhC-CCCEEEE-EEEeccc----h
Confidence            3445553   5778888888877421     122 4443  33      2233333321 3566643 3322221    2


Q ss_pred             ccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEE-EeCCcHHHHhcCCcHHHHHHHHHHHHhccC
Q 026522           78 EISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA-CVGETLEQREAGSTMDVVAAQTKAIADRVS  156 (237)
Q Consensus        78 eiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIv-CiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~  156 (237)
                      +.-.+.+++.|++++++ |.+-      .++.+..=++.+.+.|+.+++ +++-+        +   ..++++.+++.  
T Consensus        67 ~~~~~~~~~~Gad~v~v-~~~~------~~~~~~~~~~~~~~~g~~~~v~~~~~~--------t---~~~~~~~~~~~--  126 (211)
T 3f4w_A           67 HFESQLLFDAGADYVTV-LGVT------DVLTIQSCIRAAKEAGKQVVVDMICVD--------D---LPARVRLLEEA--  126 (211)
T ss_dssp             HHHHHHHHHTTCSEEEE-ETTS------CHHHHHHHHHHHHHHTCEEEEECTTCS--------S---HHHHHHHHHHH--
T ss_pred             HHHHHHHHhcCCCEEEE-eCCC------ChhHHHHHHHHHHHcCCeEEEEecCCC--------C---HHHHHHHHHHc--
Confidence            23489999999999999 5553      123344445677788999886 33321        1   11233333331  


Q ss_pred             CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522          157 SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS  226 (237)
Q Consensus       157 ~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~  226 (237)
                        ...+|.+.|-.   +|....+.. .+..+.+|+.    +     .++||+.+| +++++|+.+++..|
T Consensus       127 --g~d~i~v~~g~---~g~~~~~~~-~~~i~~l~~~----~-----~~~~i~~~g-GI~~~~~~~~~~~G  180 (211)
T 3f4w_A          127 --GADMLAVHTGT---DQQAAGRKP-IDDLITMLKV----R-----RKARIAVAG-GISSQTVKDYALLG  180 (211)
T ss_dssp             --TCCEEEEECCH---HHHHTTCCS-HHHHHHHHHH----C-----SSCEEEEES-SCCTTTHHHHHTTC
T ss_pred             --CCCEEEEcCCC---cccccCCCC-HHHHHHHHHH----c-----CCCcEEEEC-CCCHHHHHHHHHcC
Confidence              11235555521   121111111 1222344442    1     248999999 99999999987654

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=94.66  E-value=1.8  Score=36.75  Aligned_cols=99  Identities=13%  Similarity=0.034  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCccccc-----CHHHHHhCCCCe
Q 026522           17 PEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEI-----SAEMLVNLEIPW   91 (237)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGei-----Sa~mLkd~G~~~   91 (237)
                      .....++++...+.      +..-+.+.+.-+|..+++..  ++.+-+++-.  +.|.++.-|     -...+.+.|++.
T Consensus        35 ~~~~~~~A~a~~~~------Ga~~i~~~~~~~i~~ir~~v--~~Pvig~~k~--d~~~~~~~I~~~~~~i~~~~~~Gad~  104 (232)
T 3igs_A           35 PEIVAAMALAAEQA------GAVAVRIEGIDNLRMTRSLV--SVPIIGIIKR--DLDESPVRITPFLDDVDALAQAGAAI  104 (232)
T ss_dssp             HHHHHHHHHHHHHT------TCSEEEEESHHHHHHHHTTC--CSCEEEECBC--CCSSCCCCBSCSHHHHHHHHHHTCSE
T ss_pred             cchHHHHHHHHHHC------CCeEEEECCHHHHHHHHHhc--CCCEEEEEee--cCCCcceEeCccHHHHHHHHHcCCCE
Confidence            34556666665542      22233345667777766553  4555555443  333322222     246789999999


Q ss_pred             EEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 026522           92 VILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGE  130 (237)
Q Consensus        92 viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE  130 (237)
                      |+++.+-|.+-  ++.+.+   ++.+.+.|+..++.+..
T Consensus       105 V~l~~~~~~~p--~~l~~~---i~~~~~~g~~v~~~v~t  138 (232)
T 3igs_A          105 IAVDGTARQRP--VAVEAL---LARIHHHHLLTMADCSS  138 (232)
T ss_dssp             EEEECCSSCCS--SCHHHH---HHHHHHTTCEEEEECCS
T ss_pred             EEECccccCCH--HHHHHH---HHHHHHCCCEEEEeCCC
Confidence            99999865322  332223   36666779999987753

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=94.62  E-value=0.16  Score=43.71  Aligned_cols=147  Identities=14%  Similarity=0.054  Sum_probs=87.8

Q ss_pred             CccccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHC---
Q 026522           44 PPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ---  120 (237)
Q Consensus        44 Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~---  120 (237)
                      |.+++=..+.+.++.....   |+|.--..   .+-=.+++.+.|++++.+ |       .|.+..+.+-++.+.+.   
T Consensus        54 pn~t~G~~~v~~lr~~~~~---DvhLMv~~---p~~~i~~~~~aGAd~itv-H-------~ea~~~~~~~i~~i~~~~~~  119 (237)
T 3cu2_A           54 SLFTVGAIGIKYFPTHCFK---DVHLMVRN---QLEVAKAVVANGANLVTL-Q-------LEQYHDFALTIEWLAKQKTT  119 (237)
T ss_dssp             SCBCBCTHHHHTSCTTSEE---EEEEECSC---HHHHHHHHHHTTCSEEEE-E-------TTCTTSHHHHHHHHTTCEEE
T ss_pred             cchhhhHHHHHHHhhhCCC---CeEEEEEC---HHHHHHHHHHcCCCEEEE-e-------cCCcccHHHHHHHHHhcccc
Confidence            4444444555556533333   88875222   266688999999999754 3       33333455666778888   


Q ss_pred             ------CCeEEEEeC-CcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeE-EEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 026522          121 ------GLKVIACVG-ETLEQREAGSTMDVVAAQTKAIADRVSSWSNIV-LAYEPVWAIGTGKVATPAQAQEVHFELRKW  192 (237)
Q Consensus       121 ------gl~pIvCiG-Et~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~ii-IAYEPvWAIGtG~~as~e~i~~~~~~IR~~  192 (237)
                            |+.+.+.+. .|..++            ++..++.   .+-+. .+.+|...   |++. .+..-+-++.+|+.
T Consensus       120 ~~~~~~g~~~gv~l~p~Tp~~~------------l~~~l~~---~D~vlvMsv~pgfg---gq~f-~~~~l~ki~~lr~~  180 (237)
T 3cu2_A          120 YANQVYPVLIGACLCPETPISE------------LEPYLDQ---IDVIQLLTLDPRNG---TKYP-SELILDRVIQVEKR  180 (237)
T ss_dssp             ETTEEEECEEEEEECTTSCGGG------------GTTTTTT---CSEEEEESEETTTT---EECC-HHHHHHHHHHHHHH
T ss_pred             cccccCCceEEEEEeCCChHHH------------HHHHhhc---CceeeeeeeccCcC---Ceec-ChhHHHHHHHHHHH
Confidence                  999999883 232221            2223332   22222 36799654   3333 33334445566666


Q ss_pred             HHhcCCccccCcccEEEcCCCCChhhHHHHHH--ccccc
Q 026522          193 LLANTSPEIAAATRIIYGGISINVSHVLVHLL--LSFGC  229 (237)
Q Consensus       193 l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~--~~~~~  229 (237)
                      +.+.     +.+++|.-.| +||++|+.++..  -|.-.
T Consensus       181 ~~~~-----~~~~~I~vdG-GI~~~~~~~~~~~~aGad~  213 (237)
T 3cu2_A          181 LGNR-----RVEKLINIDG-SMTLELAKYFKQGTHQIDW  213 (237)
T ss_dssp             HGGG-----GGGCEEEEES-SCCHHHHHHHHHSSSCCCC
T ss_pred             HHhc-----CCCceEEEEC-CcCHHHHHHHHHhCCCCcE
Confidence            5321     2357899999 999999999877  65433

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=94.53  E-value=0.42  Score=41.29  Aligned_cols=113  Identities=13%  Similarity=0.014  Sum_probs=62.8

Q ss_pred             ccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCc-HHHHhcCCcHHHHHHHHHHHHhccC
Q 026522           78 EISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET-LEQREAGSTMDVVAAQTKAIADRVS  156 (237)
Q Consensus        78 eiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt-~e~r~~g~~~~vl~~Ql~~~l~~i~  156 (237)
                      +--.+.+++.|++.+++.-        -..+.+..-++.+.++|+.+|.-+..+ .++|            ++.+...  
T Consensus       112 ~~f~~~~~~aG~dgvii~d--------l~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~r------------l~~ia~~--  169 (262)
T 2ekc_A          112 EKFCRLSREKGIDGFIVPD--------LPPEEAEELKAVMKKYVLSFVPLGAPTSTRKR------------IKLICEA--  169 (262)
T ss_dssp             HHHHHHHHHTTCCEEECTT--------CCHHHHHHHHHHHHHTTCEECCEECTTCCHHH------------HHHHHHH--
T ss_pred             HHHHHHHHHcCCCEEEECC--------CCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHH------------HHHHHHh--
Confidence            3446779999999999951        122445556688889999876644432 2222            2222221  


Q ss_pred             CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHH
Q 026522          157 SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLL  224 (237)
Q Consensus       157 ~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~  224 (237)
                       ...++..-...=..|+..+.+++++.+.++.+|+.          .++||..|| +++ |++++++..
T Consensus       170 -a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~----------~~~pv~vG~-GI~t~e~~~~~~~  226 (262)
T 2ekc_A          170 -ADEMTYFVSVTGTTGAREKLPYERIKKKVEEYREL----------CDKPVVVGF-GVSKKEHAREIGS  226 (262)
T ss_dssp             -CSSCEEEESSCC---------CHHHHHHHHHHHHH----------CCSCEEEES-SCCSHHHHHHHHT
T ss_pred             -CCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhh----------cCCCEEEeC-CCCCHHHHHHHHc
Confidence             12232221222223333222215566667777764          147999999 998 999999543

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=94.04  E-value=0.24  Score=43.37  Aligned_cols=110  Identities=15%  Similarity=0.119  Sum_probs=59.4

Q ss_pred             cccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEE-EeCCcHHHHhcCCcHHHHHHHHHHHHhcc
Q 026522           77 GEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA-CVGETLEQREAGSTMDVVAAQTKAIADRV  155 (237)
Q Consensus        77 GeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIv-CiGEt~e~r~~g~~~~vl~~Ql~~~l~~i  155 (237)
                      .+--++.+++.|++++|+.--    .+.|..+.+    +.+.++|+..|+ |-..+.++|            ++.+... 
T Consensus       108 ~~~f~~~~~~aG~dGviv~Dl----~~ee~~~~~----~~~~~~gl~~i~liap~s~~er------------i~~ia~~-  166 (271)
T 1ujp_A          108 PERFFGLFKQAGATGVILPDL----PPDEDPGLV----RLAQEIGLETVFLLAPTSTDAR------------IATVVRH-  166 (271)
T ss_dssp             HHHHHHHHHHHTCCEEECTTC----CGGGCHHHH----HHHHHHTCEEECEECTTCCHHH------------HHHHHTT-
T ss_pred             HHHHHHHHHHcCCCEEEecCC----CHHHHHHHH----HHHHHcCCceEEEeCCCCCHHH------------HHHHHHh-
Confidence            355577899999999998632    234445544    677788986555 333332322            3333331 


Q ss_pred             CCCCCeEEEEcccccccCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHH
Q 026522          156 SSWSNIVLAYEPVWAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVH  222 (237)
Q Consensus       156 ~~~~~iiIAYEPvWAIGtG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~  222 (237)
                        ...++..-+..-.  ||... .++.+.+..+.+|+.          .++||++|| +++ |++++++
T Consensus       167 --~~gfiy~vs~~G~--TG~~~~~~~~~~~~v~~vr~~----------~~~Pv~vGf-GI~t~e~a~~~  220 (271)
T 1ujp_A          167 --ATGFVYAVSVTGV--TGMRERLPEEVKDLVRRIKAR----------TALPVAVGF-GVSGKATAAQA  220 (271)
T ss_dssp             --CCSCEEEECC--------------CCHHHHHHHHTT----------CCSCEEEES-CCCSHHHHHHH
T ss_pred             --CCCCEEEEecCcc--cCCCCCCCccHHHHHHHHHhh----------cCCCEEEEc-CCCCHHHHHHh
Confidence              1233322233222  34332 233334455555542          248999999 998 9999996

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=93.99  E-value=0.2  Score=43.45  Aligned_cols=118  Identities=15%  Similarity=0.185  Sum_probs=71.1

Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCC-cHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGE-TLEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE-t~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      .+++.++|++++.+ |.|-       .+.+.+=++.+.+.|+++-+-+.- |..+            .++.+++.+    
T Consensus       102 i~~~~~aGAd~itv-H~Ea-------~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e------------~l~~~l~~v----  157 (246)
T 3inp_A          102 IESFAKAGATSIVF-HPEA-------SEHIDRSLQLIKSFGIQAGLALNPATGID------------CLKYVESNI----  157 (246)
T ss_dssp             HHHHHHHTCSEEEE-CGGG-------CSCHHHHHHHHHTTTSEEEEEECTTCCSG------------GGTTTGGGC----
T ss_pred             HHHHHHcCCCEEEE-cccc-------chhHHHHHHHHHHcCCeEEEEecCCCCHH------------HHHHHHhcC----
Confidence            68899999999988 4443       223455557888999999988852 2111            122333322    


Q ss_pred             CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522          160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF  230 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~  230 (237)
                      . .|.+=+|..--+|+..-|+..++ ++.+|+.+.+.     +.+++|--.| +||++|+.++..-|.-++
T Consensus       158 D-~VlvMsV~PGfgGQ~fi~~~l~K-I~~lr~~~~~~-----~~~~~I~VDG-GI~~~ti~~~~~aGAD~~  220 (246)
T 3inp_A          158 D-RVLIMSVNPGFGGQKFIPAMLDK-AKEISKWISST-----DRDILLEIDG-GVNPYNIAEIAVCGVNAF  220 (246)
T ss_dssp             S-EEEEECSCTTC--CCCCTTHHHH-HHHHHHHHHHH-----TSCCEEEEES-SCCTTTHHHHHTTTCCEE
T ss_pred             C-EEEEeeecCCCCCcccchHHHHH-HHHHHHHHHhc-----CCCeeEEEEC-CcCHHHHHHHHHcCCCEE
Confidence            1 23232333222466554554444 34556655432     3458899999 999999999887776544

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=93.83  E-value=0.6  Score=38.89  Aligned_cols=112  Identities=13%  Similarity=0.059  Sum_probs=64.6

Q ss_pred             CHHHHHhCCCCeEEeccc--ccccccccCHHHHHHHHHHHHHCCCeEEEEeC-CcHHHHhcCCcHHHHHHHHHHHHhccC
Q 026522           80 SAEMLVNLEIPWVILGHS--ERRLILNELNEFVGDKVAYALSQGLKVIACVG-ETLEQREAGSTMDVVAAQTKAIADRVS  156 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHS--ERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiG-Et~e~r~~g~~~~vl~~Ql~~~l~~i~  156 (237)
                      -.+.+.++|++++.++=.  +.     |.   ...-++.+.+.|+..++-+- .|..++            ++....   
T Consensus        83 ~v~~~~~~Gad~v~vh~~~~~~-----~~---~~~~~~~~~~~g~~ig~~~~p~t~~e~------------~~~~~~---  139 (230)
T 1rpx_A           83 RVPDFIKAGADIVSVHCEQSST-----IH---LHRTINQIKSLGAKAGVVLNPGTPLTA------------IEYVLD---  139 (230)
T ss_dssp             HHHHHHHTTCSEEEEECSTTTC-----SC---HHHHHHHHHHTTSEEEEEECTTCCGGG------------GTTTTT---
T ss_pred             HHHHHHHcCCCEEEEEecCccc-----hh---HHHHHHHHHHcCCcEEEEeCCCCCHHH------------HHHHHh---
Confidence            467789999999987543  22     22   22233556677888777663 121221            111111   


Q ss_pred             CCCCeEE---EEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522          157 SWSNIVL---AYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS  226 (237)
Q Consensus       157 ~~~~iiI---AYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~  226 (237)
                       ... .|   +.+|.   ++|.+..+...+. .+.+|+.+.+.     +.++|+.-+| +++|+|+.+++..|
T Consensus       140 -~~d-~vl~~~~~pg---~~g~~~~~~~~~~-i~~l~~~~~~~-----~~~~pi~v~G-GI~~~n~~~~~~aG  200 (230)
T 1rpx_A          140 -AVD-LVLIMSVNPG---FGGQSFIESQVKK-ISDLRKICAER-----GLNPWIEVDG-GVGPKNAYKVIEAG  200 (230)
T ss_dssp             -TCS-EEEEESSCTT---CSSCCCCTTHHHH-HHHHHHHHHHH-----TCCCEEEEES-SCCTTTHHHHHHHT
T ss_pred             -hCC-EEEEEEEcCC---CCCccccHHHHHH-HHHHHHHHHhc-----CCCceEEEEC-CCCHHHHHHHHHcC
Confidence             112 34   67773   4566655544333 45566654321     2247999999 99999999976654

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=93.54  E-value=0.51  Score=40.80  Aligned_cols=112  Identities=13%  Similarity=0.057  Sum_probs=62.9

Q ss_pred             cccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCc-HHHHhcCCcHHHHHHHHHHHHhcc
Q 026522           77 GEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET-LEQREAGSTMDVVAAQTKAIADRV  155 (237)
Q Consensus        77 GeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt-~e~r~~g~~~~vl~~Ql~~~l~~i  155 (237)
                      .+--.+.+++.|++++++ |.+-   ..|..    .-++.+.++|+.+++=+..+ ..+            .++.+.+..
T Consensus       111 ~~~~~~~~~~aGadgii~-~d~~---~e~~~----~~~~~~~~~g~~~i~l~~p~t~~~------------~i~~i~~~~  170 (268)
T 1qop_A          111 IDAFYARCEQVGVDSVLV-ADVP---VEESA----PFRQAALRHNIAPIFICPPNADDD------------LLRQVASYG  170 (268)
T ss_dssp             HHHHHHHHHHHTCCEEEE-TTCC---GGGCH----HHHHHHHHTTCEEECEECTTCCHH------------HHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCEEEE-cCCC---HHHHH----HHHHHHHHcCCcEEEEECCCCCHH------------HHHHHHhhC
Confidence            355677899999999998 3322   23333    33478889999876544432 222            122333321


Q ss_pred             CCCCCeEEEEccccccc-CCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHc
Q 026522          156 SSWSNIVLAYEPVWAIG-TGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLL  225 (237)
Q Consensus       156 ~~~~~iiIAYEPvWAIG-tG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~  225 (237)
                         ..++. +--+ . | ||... .++...+.++.+|+..          ++||..|| +++ |+|+.+.+.-
T Consensus       171 ---~g~v~-~~s~-~-G~tG~~~~~~~~~~~~i~~lr~~~----------~~pi~vgg-GI~t~e~~~~~~~a  226 (268)
T 1qop_A          171 ---RGYTY-LLSR-S-GVTGAENRGALPLHHLIEKLKEYH----------AAPALQGF-GISSPEQVSAAVRA  226 (268)
T ss_dssp             ---CSCEE-EESS-S-SCCCSSSCC--CCHHHHHHHHHTT----------CCCEEEES-SCCSHHHHHHHHHT
T ss_pred             ---CCcEE-EEec-C-CcCCCccCCCchHHHHHHHHHhcc----------CCcEEEEC-CCCCHHHHHHHHHc
Confidence               22332 2121 1 3 55432 2334444455566531          47999999 999 9999995543

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=93.41  E-value=3.2  Score=35.12  Aligned_cols=157  Identities=12%  Similarity=0.005  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCccccc-----CHHHHHhCCCCeE
Q 026522           18 EEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEI-----SAEMLVNLEIPWV   92 (237)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGei-----Sa~mLkd~G~~~v   92 (237)
                      ....++++...+.      +..-+-+.+.-+|..+++..  ++.+-+++-.  +.|.++.-|     ....+.+.|++.|
T Consensus        36 ~~~~~~A~a~~~~------Ga~~i~~~~~~~i~~ir~~v--~~Pvig~~k~--~~~~~~~~I~~~~~~i~~~~~aGad~I  105 (229)
T 3q58_A           36 EIVAAMAQAAASA------GAVAVRIEGIENLRTVRPHL--SVPIIGIIKR--DLTGSPVRITPYLQDVDALAQAGADII  105 (229)
T ss_dssp             HHHHHHHHHHHHT------TCSEEEEESHHHHHHHGGGC--CSCEEEECBC--CCSSCCCCBSCSHHHHHHHHHHTCSEE
T ss_pred             chHHHHHHHHHHC------CCcEEEECCHHHHHHHHHhc--CCCEEEEEee--cCCCCceEeCccHHHHHHHHHcCCCEE
Confidence            4455566655542      22223345667777766553  5666656532  223222222     2467999999999


Q ss_pred             EecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEE-----Ecc
Q 026522           93 ILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLA-----YEP  167 (237)
Q Consensus        93 iIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIA-----YEP  167 (237)
                      +++.+-|.+-  ++.+.+   ++.+.+.|+..+..+... ++             .+...+    ..-.+|.     |++
T Consensus       106 ~l~~~~~~~p--~~l~~~---i~~~~~~g~~v~~~v~t~-ee-------------a~~a~~----~Gad~Ig~~~~g~t~  162 (229)
T 3q58_A          106 AFDASFRSRP--VDIDSL---LTRIRLHGLLAMADCSTV-NE-------------GISCHQ----KGIEFIGTTLSGYTG  162 (229)
T ss_dssp             EEECCSSCCS--SCHHHH---HHHHHHTTCEEEEECSSH-HH-------------HHHHHH----TTCSEEECTTTTSSS
T ss_pred             EECccccCCh--HHHHHH---HHHHHHCCCEEEEecCCH-HH-------------HHHHHh----CCCCEEEecCccCCC
Confidence            9999865322  332223   356667799999887532 22             111221    1111222     333


Q ss_pred             cccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHcc
Q 026522          168 VWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLS  226 (237)
Q Consensus       168 vWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~  226 (237)
                      ..     ++..++     ...+++...       . ++|++-.| ++ +|+++..++..|
T Consensus       163 ~~-----~~~~~~-----~~li~~l~~-------~-~ipvIA~G-GI~t~~d~~~~~~~G  203 (229)
T 3q58_A          163 PI-----TPVEPD-----LAMVTQLSH-------A-GCRVIAEG-RYNTPALAANAIEHG  203 (229)
T ss_dssp             SC-----CCSSCC-----HHHHHHHHT-------T-TCCEEEES-SCCSHHHHHHHHHTT
T ss_pred             CC-----cCCCCC-----HHHHHHHHH-------c-CCCEEEEC-CCCCHHHHHHHHHcC
Confidence            21     121221     133444321       1 58999999 99 699999988774

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=93.17  E-value=0.15  Score=43.72  Aligned_cols=115  Identities=19%  Similarity=0.179  Sum_probs=71.5

Q ss_pred             HHHHHhCCCCeEEecccccccccccC-HHHHHHHHHHHHHCCCeEEEEeCC-cHHHHhcCCcHHHHHHHHHHHHhccCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNEL-NEFVGDKVAYALSQGLKVIACVGE-TLEQREAGSTMDVVAAQTKAIADRVSSW  158 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiGE-t~e~r~~g~~~~vl~~Ql~~~l~~i~~~  158 (237)
                      .+++.+.|++++.+ |       .|. ...+.+=++.+.+.|+++.+-+.= |..+            .++.+++.+   
T Consensus        73 i~~~~~aGAd~itv-h-------~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~------------~~~~~l~~~---  129 (231)
T 3ctl_A           73 IAQLARAGADFITL-H-------PETINGQAFRLIDEIRRHDMKVGLILNPETPVE------------AMKYYIHKA---  129 (231)
T ss_dssp             HHHHHHHTCSEEEE-C-------GGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGG------------GGTTTGGGC---
T ss_pred             HHHHHHcCCCEEEE-C-------cccCCccHHHHHHHHHHcCCeEEEEEECCCcHH------------HHHHHHhcC---
Confidence            59999999999987 3       344 334556668888999999887731 2111            122333332   


Q ss_pred             CCe-EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccc
Q 026522          159 SNI-VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFG  228 (237)
Q Consensus       159 ~~i-iIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~  228 (237)
                      +-+ +...+|-..   |+..-|+..+ -++.+|+.+.+.     +.+++|--.| +||++|+.++..-|.-
T Consensus       130 D~VlvmsV~pGfg---gQ~f~~~~l~-kI~~lr~~~~~~-----~~~~~I~VdG-GI~~~~~~~~~~aGAd  190 (231)
T 3ctl_A          130 DKITVMTVDPGFA---GQPFIPEMLD-KLAELKAWRERE-----GLEYEIEVDG-SCNQATYEKLMAAGAD  190 (231)
T ss_dssp             SEEEEESSCTTCS---SCCCCTTHHH-HHHHHHHHHHHH-----TCCCEEEEES-CCSTTTHHHHHHHTCC
T ss_pred             CEEEEeeeccCcC---CccccHHHHH-HHHHHHHHHhcc-----CCCceEEEEC-CcCHHHHHHHHHcCCC
Confidence            222 235777442   5554444333 345567665431     2347899999 9999999998776543

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=93.12  E-value=0.39  Score=41.56  Aligned_cols=112  Identities=13%  Similarity=-0.014  Sum_probs=71.2

Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      ...++++|++.|++|++-..       +.+.+=+..+.+.||.+++|+-...|              +...+.    ...
T Consensus       121 i~~a~~~GAD~VlL~~~~l~-------~~l~~l~~~a~~lGl~~lvev~~~~E--------------~~~a~~----~ga  175 (254)
T 1vc4_A          121 LEEARAFGASAALLIVALLG-------ELTGAYLEEARRLGLEALVEVHTERE--------------LEIALE----AGA  175 (254)
T ss_dssp             HHHHHHTTCSEEEEEHHHHG-------GGHHHHHHHHHHHTCEEEEEECSHHH--------------HHHHHH----HTC
T ss_pred             HHHHHHcCCCEEEECccchH-------HHHHHHHHHHHHCCCeEEEEECCHHH--------------HHHHHH----cCC
Confidence            36688899999999999542       24555557777889999999975422              222222    122


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHcccccc
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLLSFGCF  230 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~~~~~~  230 (237)
                      .+|...|+...  ....+.+...++...+..    .     ..+++++..| +++ ++++..+.. |+-++
T Consensus       176 d~IGvn~~~l~--~~~~dl~~~~~L~~~i~~----~-----~~~~~vIAeg-GI~s~~dv~~l~~-Ga~gv  233 (254)
T 1vc4_A          176 EVLGINNRDLA--TLHINLETAPRLGRLARK----R-----GFGGVLVAES-GYSRKEELKALEG-LFDAV  233 (254)
T ss_dssp             SEEEEESBCTT--TCCBCTTHHHHHHHHHHH----T-----TCCSEEEEES-CCCSHHHHHTTTT-TCSEE
T ss_pred             CEEEEccccCc--CCCCCHHHHHHHHHhCcc----c-----cCCCeEEEEc-CCCCHHHHHHHHc-CCCEE
Confidence            46788887643  223444444433333221    0     1147899999 998 999999887 65543

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=91.92  E-value=1.3  Score=38.30  Aligned_cols=121  Identities=15%  Similarity=0.092  Sum_probs=65.6

Q ss_pred             CcCccccc---CHHHHHhCC-CCeEEe-cccccccccccCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCcHHHHH
Q 026522           72 GGAFTGEI---SAEMLVNLE-IPWVIL-GHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGSTMDVVA  145 (237)
Q Consensus        72 ~GA~TGei---Sa~mLkd~G-~~~viI-GHSERR~~f~Etd~~V~~Kv~~al~~gl~pI-vCiGEt~e~r~~g~~~~vl~  145 (237)
                      .|.|+=+-   -+++++++| ..++-+ .+.+.+..+.|.. .+.+.++..+..|+.++ +|...+ +            
T Consensus        73 ~~~~~~~~~~~f~~~a~~agg~~~i~l~i~~d~~~~~~e~~-~~~~~a~~~~~~g~~vi~~~~~~~-~------------  138 (264)
T 1xm3_A           73 AGASTAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPDPV-ETLKASEQLLEEGFIVLPYTSDDV-V------------  138 (264)
T ss_dssp             TTCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCHH-HHHHHHHHHHHTTCCEEEEECSCH-H------------
T ss_pred             cccCCHHHHHHHHHHHHHcCCCCeEEEeecCCCcccccchH-HHHHHHHHHHCCCeEEEEEcCCCH-H------------
Confidence            35454442   456677774 455432 3445544455544 45455666666699999 777543 2            


Q ss_pred             HHHHHHHhccCCCCCeEEEEcccccccCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHH
Q 026522          146 AQTKAIADRVSSWSNIVLAYEPVWAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHL  223 (237)
Q Consensus       146 ~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~  223 (237)
                       +++.+.+.   ...+++.+-++  +|++... +++    ..+.+|+.          .++||+-|| +++ |+++.+++
T Consensus       139 -~a~~~~~~---gad~v~~~~~~--~Gt~~~~~~~~----~l~~i~~~----------~~iPviv~g-GI~t~eda~~~~  197 (264)
T 1xm3_A          139 -LARKLEEL---GVHAIMPGASP--IGSGQGILNPL----NLSFIIEQ----------AKVPVIVDA-GIGSPKDAAYAM  197 (264)
T ss_dssp             -HHHHHHHH---TCSCBEECSSS--TTCCCCCSCHH----HHHHHHHH----------CSSCBEEES-CCCSHHHHHHHH
T ss_pred             -HHHHHHHh---CCCEEEECCcc--cCCCCCCCCHH----HHHHHHhc----------CCCCEEEEe-CCCCHHHHHHHH
Confidence             12222211   12233333332  4665433 333    33444431          248999999 996 99999987


Q ss_pred             Hccc
Q 026522          224 LLSF  227 (237)
Q Consensus       224 ~~~~  227 (237)
                      ..|.
T Consensus       198 ~~GA  201 (264)
T 1xm3_A          198 ELGA  201 (264)
T ss_dssp             HTTC
T ss_pred             HcCC
Confidence            7653

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=91.66  E-value=3.7  Score=33.47  Aligned_cols=113  Identities=11%  Similarity=0.110  Sum_probs=64.3

Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCC-cHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGE-TLEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE-t~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      .+.+.++|+++|.++=.+.     |....+   ++.+.+.|+..++-+.- +..++            ++....   ..+
T Consensus        77 i~~~~~~gad~v~vh~~~~-----~~~~~~---~~~~~~~g~~i~~~~~~~t~~e~------------~~~~~~---~~d  133 (220)
T 2fli_A           77 VEAFAQAGADIMTIHTEST-----RHIHGA---LQKIKAAGMKAGVVINPGTPATA------------LEPLLD---LVD  133 (220)
T ss_dssp             HHHHHHHTCSEEEEEGGGC-----SCHHHH---HHHHHHTTSEEEEEECTTSCGGG------------GGGGTT---TCS
T ss_pred             HHHHHHcCCCEEEEccCcc-----ccHHHH---HHHHHHcCCcEEEEEcCCCCHHH------------HHHHHh---hCC
Confidence            5899999999998854432     222222   24445678887776621 11111            111111   112


Q ss_pred             CeE-EEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522          160 NIV-LAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS  226 (237)
Q Consensus       160 ~ii-IAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~  226 (237)
                      -+. .+++|.   ++|.+..+.-.++ .+.+|+...+.     ..++||.-.| +++++|+.++...|
T Consensus       134 ~vl~~~~~~g---~~g~~~~~~~~~~-i~~~~~~~~~~-----~~~~~i~v~G-GI~~~~~~~~~~~G  191 (220)
T 2fli_A          134 QVLIMTVNPG---FGGQAFIPECLEK-VATVAKWRDEK-----GLSFDIEVDG-GVDNKTIRACYEAG  191 (220)
T ss_dssp             EEEEESSCTT---CSSCCCCGGGHHH-HHHHHHHHHHT-----TCCCEEEEES-SCCTTTHHHHHHHT
T ss_pred             EEEEEEECCC---CcccccCHHHHHH-HHHHHHHHHhc-----CCCceEEEEC-cCCHHHHHHHHHcC
Confidence            222 256763   4566666644333 45566655321     1247899999 99999999976654

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=90.91  E-value=2.6  Score=36.74  Aligned_cols=110  Identities=6%  Similarity=-0.038  Sum_probs=65.4

Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      ....+++|++.|++|++--+      ++.+..=++.+.+.||.+++++-.. ++             +..+++.    ..
T Consensus       128 v~~A~~~GAD~VlLi~a~l~------~~~l~~l~~~a~~lGl~~lvev~t~-ee-------------~~~A~~~----Ga  183 (272)
T 3qja_A          128 IHEARAHGADMLLLIVAALE------QSVLVSMLDRTESLGMTALVEVHTE-QE-------------ADRALKA----GA  183 (272)
T ss_dssp             HHHHHHTTCSEEEEEGGGSC------HHHHHHHHHHHHHTTCEEEEEESSH-HH-------------HHHHHHH----TC
T ss_pred             HHHHHHcCCCEEEEecccCC------HHHHHHHHHHHHHCCCcEEEEcCCH-HH-------------HHHHHHC----CC
Confidence            46677899999999998432      4455555678888999999998543 22             1122211    12


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHccccc
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLLSFGC  229 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~~~~~  229 (237)
                      .+|.+-|.-    ..+..++ .+    .+++. .+..    ..+++++-+| +++ |+|+..+...|+-+
T Consensus       184 d~IGv~~r~----l~~~~~d-l~----~~~~l-~~~v----~~~~pvVaeg-GI~t~edv~~l~~~Gadg  238 (272)
T 3qja_A          184 KVIGVNARD----LMTLDVD-RD----CFARI-APGL----PSSVIRIAES-GVRGTADLLAYAGAGADA  238 (272)
T ss_dssp             SEEEEESBC----TTTCCBC-TT----HHHHH-GGGS----CTTSEEEEES-CCCSHHHHHHHHHTTCSE
T ss_pred             CEEEECCCc----ccccccC-HH----HHHHH-HHhC----cccCEEEEEC-CCCCHHHHHHHHHcCCCE
Confidence            244554421    1222221 11    12222 1211    2358999999 998 99999988876544

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=88.97  E-value=1.8  Score=38.48  Aligned_cols=109  Identities=8%  Similarity=0.056  Sum_probs=57.1

Q ss_pred             CHHHHHhCCCCeEEecc--cccccccccCHHHHHHHHHHHHHCCCeEEEE--eCCcHHHHhcCCcHHHHHHHHHHHHhcc
Q 026522           80 SAEMLVNLEIPWVILGH--SERRLILNELNEFVGDKVAYALSQGLKVIAC--VGETLEQREAGSTMDVVAAQTKAIADRV  155 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGH--SERR~~f~Etd~~V~~Kv~~al~~gl~pIvC--iGEt~e~r~~g~~~~vl~~Ql~~~l~~i  155 (237)
                      ...+++++|++.+.+|=  .|-     +-|..-.+++..+. .++...+-  +.+.       .....-.+||...  + 
T Consensus       116 dI~~~~~~GAdGvVfG~L~~dg-----~iD~~~~~~Li~~a-~~l~vTFHRAFD~~-------~d~~~Ale~Li~l--G-  179 (287)
T 3iwp_A          116 DIRLAKLYGADGLVFGALTEDG-----HIDKELCMSLMAIC-RPLPVTFHRAFDMV-------HDPMAALETLLTL--G-  179 (287)
T ss_dssp             HHHHHHHTTCSEEEECCBCTTS-----CBCHHHHHHHHHHH-TTSCEEECGGGGGC-------SCHHHHHHHHHHH--T-
T ss_pred             HHHHHHHcCCCEEEEeeeCCCC-----CcCHHHHHHHHHHc-CCCcEEEECchhcc-------CCHHHHHHHHHHc--C-
Confidence            46788999999999994  332     23444444444433 34433321  1111       0111122233221  2 


Q ss_pred             CCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          156 SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       156 ~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                        .+++.-         +|..++..   +-...||+.+..     .+..++|+-|| +|+++|+.+++.
T Consensus       180 --vdrILT---------SG~~~~a~---~Gl~~Lk~Lv~~-----a~~rI~ImaGG-GV~~~Ni~~l~~  228 (287)
T 3iwp_A          180 --FERVLT---------SGCDSSAL---EGLPLIKRLIEQ-----AKGRIVVMPGG-GITDRNLQRILE  228 (287)
T ss_dssp             --CSEEEE---------CTTSSSTT---TTHHHHHHHHHH-----HTTSSEEEECT-TCCTTTHHHHHH
T ss_pred             --CCEEEC---------CCCCCChH---HhHHHHHHHHHH-----hCCCCEEEECC-CcCHHHHHHHHH
Confidence              334322         44443332   233445554432     13469999999 999999999876

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=88.53  E-value=2.8  Score=35.85  Aligned_cols=143  Identities=18%  Similarity=0.275  Sum_probs=79.2

Q ss_pred             EcCccccHHHHH---HhcCCCcEEeeeccccccC-cC--ccc-cc-----CHHHHHhCCCCeEEecccccccccccCHHH
Q 026522           42 VSPPFVFLGLVK---SSLRPGFHVAAQNCWVKKG-GA--FTG-EI-----SAEMLVNLEIPWVILGHSERRLILNELNEF  109 (237)
Q Consensus        42 i~Pp~~~L~~~~---~~~~~~i~igAQnv~~~~~-GA--~TG-ei-----Sa~mLkd~G~~~viIGHSERR~~f~Etd~~  109 (237)
                      +-|++-.+..+.   +..  ++.|-   +=.... |-  ||- |+     ...+++++|++.+.+|=--.   =++-|..
T Consensus        36 lTPS~g~i~~~~~~~~~~--~ipV~---vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~---dg~iD~~  107 (224)
T 2bdq_A           36 TTPSYGVIKEANQYLHEK--GISVA---VMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGILTS---NNHIDTE  107 (224)
T ss_dssp             BCCCHHHHHHHHHHHHHT--TCEEE---EECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCT---TSSBCHH
T ss_pred             cCCCHHHHHHHHHhhhhc--CCceE---EEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECC---CCCcCHH
Confidence            558888887775   443  34332   111222 22  332 22     35678999999999997644   3456766


Q ss_pred             HHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHH--HHHHHHHHhcc-C-CCCCeEEEEcccccccCCCCCC--HHHHH
Q 026522          110 VGDKVAYALSQGLKVIACVGETLEQREAGSTMDVV--AAQTKAIADRV-S-SWSNIVLAYEPVWAIGTGKVAT--PAQAQ  183 (237)
Q Consensus       110 V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl--~~Ql~~~l~~i-~-~~~~iiIAYEPvWAIGtG~~as--~e~i~  183 (237)
                      ..+++-.+. .|+...+-           +..|.+  .+|.++ ++.+ + ..+++.         =+|..++  .++= 
T Consensus       108 ~~~~Li~~a-~~~~vTFH-----------RAFD~~~~~d~~~a-le~L~~lGv~rIL---------TSG~~~~~~a~~g-  164 (224)
T 2bdq_A          108 AIEQLLPAT-QGLPLVFH-----------MAFDVIPKSDQKKS-IDQLVALGFTRIL---------LHGSSNGEPIIEN-  164 (224)
T ss_dssp             HHHHHHHHH-TTCCEEEC-----------GGGGGSCTTTHHHH-HHHHHHTTCCEEE---------ECSCSSCCCGGGG-
T ss_pred             HHHHHHHHh-CCCeEEEE-----------CchhccCCcCHHHH-HHHHHHcCCCEEE---------CCCCCCCCcHHHH-
Confidence            667766544 58877761           112222  222211 1111 0 133432         1455554  3332 


Q ss_pred             HHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH
Q 026522          184 EVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL  223 (237)
Q Consensus       184 ~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~  223 (237)
                        ...||+++..     .+..+.|+-|| +|+++|+.+++
T Consensus       165 --~~~L~~Lv~~-----a~~ri~Im~Gg-GV~~~Ni~~l~  196 (224)
T 2bdq_A          165 --IKHIKALVEY-----ANNRIEIMVGG-GVTAENYQYIC  196 (224)
T ss_dssp             --HHHHHHHHHH-----HTTSSEEEECS-SCCTTTHHHHH
T ss_pred             --HHHHHHHHHh-----hCCCeEEEeCC-CCCHHHHHHHH
Confidence              3455555432     13468999999 99999999987

>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}

Probab=87.74  E-value=8.4  Score=36.22  Aligned_cols=163  Identities=18%  Similarity=0.174  Sum_probs=88.7

Q ss_pred             CCcEEee-eccccccCcCcccc---cCH----HHHHhCCCCe--EEe--ccccc--ccccccCHH--HHHHHHHHHHHCC
Q 026522           58 PGFHVAA-QNCWVKKGGAFTGE---ISA----EMLVNLEIPW--VIL--GHSER--RLILNELNE--FVGDKVAYALSQG  121 (237)
Q Consensus        58 ~~i~igA-Qnv~~~~~GA~TGe---iSa----~mLkd~G~~~--viI--GHSER--R~~f~Etd~--~V~~Kv~~al~~g  121 (237)
                      +++-|.+ +|-- ...|-|||-   .=.    .+.++.|+..  |++  -|-.-  -+...+..+  .--.-++.|+++|
T Consensus        46 sPVIIe~t~~qv-~~~gGYtG~~p~~f~~~V~~~A~~~~vPv~pV~LhlDHg~~~~w~~~~~~~am~~a~e~i~~aI~AG  124 (450)
T 3txv_A           46 APVLIEATCNQV-NQDGGYTGMTPEDFTRFVGAIADRIEFPREKILLGGDHLGPNPWKHLPADEAMAKAEAMITAYAKAG  124 (450)
T ss_dssp             SCEEEEEETTTS-CTTCTTTTCCHHHHHHHHHHHHHHTTCCGGGEEEEEEEESSGGGTTSCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEcChhhH-hhcCCCCCCCHHHHHHHHHHHHHHcCcCcccEEEECCCCCCcccccccHHHHHHHHHHHHHHHHHcC
Confidence            5665543 3322 123779982   222    3445678884  333  35532  222221111  1223358999999


Q ss_pred             CeEEE------EeCCcHHHHhcCCcHHHHHHHHHHHHhccCC-CCCeEEEEcccccccCCC--------------CCCHH
Q 026522          122 LKVIA------CVGETLEQREAGSTMDVVAAQTKAIADRVSS-WSNIVLAYEPVWAIGTGK--------------VATPA  180 (237)
Q Consensus       122 l~pIv------CiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~-~~~iiIAYEPvWAIGtG~--------------~as~e  180 (237)
                      ++.|-      |.+|+     --.|.+++.+....+.+-... ....-.. ||..-|||-.              ..+|+
T Consensus       125 FtSVMiD~S~~p~eeN-----i~lt~evva~rtaeL~~~A~~~~~~~g~~-e~~yviGtEvpvpGGa~~~~~~~~~T~Pe  198 (450)
T 3txv_A          125 FTKLHLDTSMGCAGEP-----TALPDATTAARAARLAAVAEDAVGGRGGV-LPVYIIGTEVPIPGGALEELDTLEVTAPE  198 (450)
T ss_dssp             CCEEEECCCBCCSSSC-----SBCCHHHHHHHHHHHHHHHHHTC-------CCEEEEECC-------------CCCCCHH
T ss_pred             CCEEEECCCCCchhhc-----cchhHHHHHHHHHHHHHHHHHHHhhcCCC-CceEEeeeecCCCCccccccccCCCCCHH
Confidence            99985      66665     236788887766555532211 1111112 7888888832              35888


Q ss_pred             HHHHHHHHHHHHHHh---------------cCCcccc-------------------Cccc-EE-EcCCC---CChhhHHH
Q 026522          181 QAQEVHFELRKWLLA---------------NTSPEIA-------------------AATR-II-YGGIS---INVSHVLV  221 (237)
Q Consensus       181 ~i~~~~~~IR~~l~~---------------~~~~~~a-------------------~~i~-IL-YGG~S---V~~~Na~~  221 (237)
                      ++.+.++.-+..+.+               ..|.+-+                   .++| ++ =|| |   +++++.+.
T Consensus       199 eA~~fv~~~~~~f~~~gld~~w~~v~~lvVqpGt~f~~~~v~~y~~e~~~~L~~~v~~~P~LVlhgh-StDy~~~e~l~~  277 (450)
T 3txv_A          199 AAIETVRVHRAAFEEAGAAGAFSRVVGAVVQPGVEFGNENVIAYDRARAEKLSATLGQLHGMVFEAH-STDYQTPDALRE  277 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHTTEEEEECCCSCEECSSCEECCCTTTTSHHHHGGGTSTTCEEEES-CCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcccccCceeEEEecCCcccCCCCCCCCCHHHHHHHHHHhccCCCEEEecC-CCCCCCHHHHHH
Confidence            888777765555542               1111111                   2446 44 488 7   88999999


Q ss_pred             HHHcccc
Q 026522          222 HLLLSFG  228 (237)
Q Consensus       222 ~~~~~~~  228 (237)
                      +...||.
T Consensus       278 ~V~~Gia  284 (450)
T 3txv_A          278 LVADGFA  284 (450)
T ss_dssp             HHHTTEE
T ss_pred             HHHcCCc
Confidence            8776663

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=86.18  E-value=2  Score=37.49  Aligned_cols=144  Identities=13%  Similarity=0.146  Sum_probs=80.3

Q ss_pred             EcCccccHHHHHHhcCCCcEEeeeccccccC-cC--ccc-cc-----CHHHHHhCCCCeEEecccccccccccCHHHHHH
Q 026522           42 VSPPFVFLGLVKSSLRPGFHVAAQNCWVKKG-GA--FTG-EI-----SAEMLVNLEIPWVILGHSERRLILNELNEFVGD  112 (237)
Q Consensus        42 i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~-GA--~TG-ei-----Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~  112 (237)
                      +-|++-.+..+.+..  +++|-   +=..+. |-  ||- |+     ...+++++|++.+.+|=--.   =++-|....+
T Consensus        36 lTPS~g~i~~~~~~~--~ipv~---vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~---dg~iD~~~~~  107 (256)
T 1twd_A           36 LTPSLGVLKSVRQRV--TIPVH---PIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDV---DGNVDMPRME  107 (256)
T ss_dssp             BCCCHHHHHHHHHHC--CSCEE---EBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCT---TSSBCHHHHH
T ss_pred             CCCCHHHHHHHHHHc--CCceE---EEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECC---CCCcCHHHHH
Confidence            558888887776654  23221   111222 22  332 22     45678999999999997643   3556766767


Q ss_pred             HHHHHHHCCCeEEEE--eCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHH
Q 026522          113 KVAYALSQGLKVIAC--VGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELR  190 (237)
Q Consensus       113 Kv~~al~~gl~pIvC--iGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR  190 (237)
                      ++..+. .|+...+-  +....+       ...-.+||...  +   .+++.=         +|..++..+   -...||
T Consensus       108 ~Li~~a-~~~~vTFHRAfD~~~d-------~~~ale~L~~l--G---~~rILT---------SG~~~~a~~---g~~~L~  162 (256)
T 1twd_A          108 KIMAAA-GPLAVTFHRAFDMCAN-------PLYTLNNLAEL--G---IARVLT---------SGQKSDALQ---GLSKIM  162 (256)
T ss_dssp             HHHHHH-TTSEEEECGGGGGCSC-------HHHHHHHHHHH--T---CCEEEE---------CTTSSSTTT---THHHHH
T ss_pred             HHHHHh-CCCcEEEECchhccCC-------HHHHHHHHHHc--C---CCEEEC---------CCCCCCHHH---HHHHHH
Confidence            766544 58876661  111100       01112333322  1   233321         344444333   345566


Q ss_pred             HHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          191 KWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       191 ~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      +.+.. .    + .+.|+-|| +|+++|+.+++..
T Consensus       163 ~Lv~~-a----~-~i~Im~Gg-Gv~~~Ni~~l~~t  190 (256)
T 1twd_A          163 ELIAH-R----D-APIIMAGA-GVRAENLHHFLDA  190 (256)
T ss_dssp             HHHTS-S----S-CCEEEEES-SCCTTTHHHHHHH
T ss_pred             HHHHh-h----C-CcEEEecC-CcCHHHHHHHHHc
Confidence            65432 1    2 68999999 9999999998743

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=85.74  E-value=7.4  Score=31.27  Aligned_cols=23  Identities=17%  Similarity=0.111  Sum_probs=19.5

Q ss_pred             cccEEEcCCCCChhhHHHHHHccc
Q 026522          204 ATRIIYGGISINVSHVLVHLLLSF  227 (237)
Q Consensus       204 ~i~ILYGG~SV~~~Na~~~~~~~~  227 (237)
                      ++||+-+| +++++|+.+++..|.
T Consensus       162 ~~pvia~G-GI~~~nv~~~~~~Ga  184 (215)
T 1xi3_A          162 KIPVVAIG-GINKDNAREVLKTGV  184 (215)
T ss_dssp             SSCEEEES-SCCTTTHHHHHTTTC
T ss_pred             CCCEEEEC-CcCHHHHHHHHHcCC
Confidence            47999999 999999999877543

>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A

Probab=83.48  E-value=9.8  Score=32.38  Aligned_cols=52  Identities=6%  Similarity=0.001  Sum_probs=38.0

Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET  131 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt  131 (237)
                      ....+|++|++.|=+.|++.-.+-.+.-+.+.+=+..|.++||.+|+.+--.
T Consensus        36 ~~~~i~~~G~N~VRi~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~Vild~H~~   87 (294)
T 2whl_A           36 AIPAIAEQGANTIRIVLSDGGQWEKDDIDTIREVIELAEQNKMVAVVEVHDA   87 (294)
T ss_dssp             HHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred             HHHHHHHcCCCEEEEEecCCCccCccHHHHHHHHHHHHHHCCCEEEEEeccC
Confidence            4678899999999888874322222334556666699999999999988643

>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A

Probab=83.00  E-value=14  Score=31.96  Aligned_cols=121  Identities=19%  Similarity=0.143  Sum_probs=63.5

Q ss_pred             HHHHHhCCCCeEEecccccccc-------ccc-----------CHHHHHHHHHHHHHCCCeEEEEeCCcHHHHh------
Q 026522           81 AEMLVNLEIPWVILGHSERRLI-------LNE-----------LNEFVGDKVAYALSQGLKVIACVGETLEQRE------  136 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~-------f~E-----------td~~V~~Kv~~al~~gl~pIvCiGEt~e~r~------  136 (237)
                      ...||++|++.|=+.++-.|..       +++           .-+.+.+=+..|.++||.+|+.+--......      
T Consensus        50 ~~~~~~~G~n~vRi~~~~~~~~~~~~~~~~~~~~~np~~~g~~~~~~ld~~v~~a~~~Gi~vild~h~~~~~~~~~~w~~  129 (358)
T 1ece_A           50 LDQIKSLGYNTIRLPYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRHRPDCSGQSALWYT  129 (358)
T ss_dssp             HHHHHHTTCCEEEEEEEGGGGSTTCCCCSCCCSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEEESBTTBCCSSSCC
T ss_pred             HHHHHHcCCCEEEeeccHHHhcCCCCCccccccccCccccCccHHHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCcC
Confidence            5678889998887777643321       111           1133444569999999999998843100000      


Q ss_pred             cCCcHHHHHHHHHHHHhccCCCCCeEEEE----ccccc--ccCCCCC--CHHHHHHHHHHHHHHHHhcCCccccCcccEE
Q 026522          137 AGSTMDVVAAQTKAIADRVSSWSNIVLAY----EPVWA--IGTGKVA--TPAQAQEVHFELRKWLLANTSPEIAAATRII  208 (237)
Q Consensus       137 ~g~~~~vl~~Ql~~~l~~i~~~~~iiIAY----EPvWA--IGtG~~a--s~e~i~~~~~~IR~~l~~~~~~~~a~~i~IL  208 (237)
                      ...+.+...+-++.+..... ..+-+++|    ||.-.  -|++...  =.+.++++.+.||+.         ..+..|+
T Consensus       130 ~~~~~~~~~~~~~~ia~r~~-~~p~v~~~el~NEP~~~~~w~~~~~~~~~~~~~~~~~~~Ir~~---------dp~~~v~  199 (358)
T 1ece_A          130 SSVSEATWISDLQALAQRYK-GNPTVVGFDLHNEPHDPACWGCGDPSIDWRLAAERAGNAVLSV---------NPNLLIF  199 (358)
T ss_dssp             SSSCHHHHHHHHHHHHHHTT-TCTTEEEEECSSCCCTTCBSSCCCTTTBHHHHHHHHHHHHHHH---------CTTSEEE
T ss_pred             CCccHHHHHHHHHHHHHHhc-CCCcEEEEEcccCCCCcccCCCCCCHHHHHHHHHHHHHHHHhh---------CCCeEEE
Confidence            01123333333444443322 23456778    45321  1222221  122357777777764         3346788


Q ss_pred             EcC
Q 026522          209 YGG  211 (237)
Q Consensus       209 YGG  211 (237)
                      .||
T Consensus       200 v~g  202 (358)
T 1ece_A          200 VEG  202 (358)
T ss_dssp             EEC
T ss_pred             ECC
Confidence            887

>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}

Probab=81.72  E-value=24  Score=31.41  Aligned_cols=52  Identities=8%  Similarity=0.003  Sum_probs=38.9

Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET  131 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt  131 (237)
                      ....|++.|++.|=+-|++.-.+-.+.-+.+.+=+..|.++||.+|+-+-..
T Consensus        59 ~i~~lk~~G~N~VRip~~~~~~~~~~~l~~ld~~v~~a~~~GiyVIlDlH~~  110 (345)
T 3jug_A           59 AIPAIAEQGANTIRIVLSDGGQWEKDDIDTVREVIELAEQNKMVAVVEVHDA  110 (345)
T ss_dssp             HHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred             HHHHHHHcCCCEEEEEecCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeccC
Confidence            5678999999999888875432222334556666799999999999988654

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=81.24  E-value=9.2  Score=31.23  Aligned_cols=50  Identities=14%  Similarity=0.078  Sum_probs=32.3

Q ss_pred             EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHcc
Q 026522          162 VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLLS  226 (237)
Q Consensus       162 iIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~~  226 (237)
                      .|.+-|+..-|++...+.+.+.    .+++.          .++||+.+| +|+ ++|+.+++..|
T Consensus       170 ~i~~~~~~~~g~~~~~~~~~i~----~l~~~----------~~~pvia~G-Gi~~~~~~~~~~~~G  220 (253)
T 1h5y_A          170 EILLTSIDRDGTGLGYDVELIR----RVADS----------VRIPVIASG-GAGRVEHFYEAAAAG  220 (253)
T ss_dssp             EEEEEETTTTTTCSCCCHHHHH----HHHHH----------CSSCEEEES-CCCSHHHHHHHHHTT
T ss_pred             EEEEecccCCCCcCcCCHHHHH----HHHHh----------cCCCEEEeC-CCCCHHHHHHHHHcC
Confidence            3445566666776555544442    23322          148999999 998 59999988654

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=80.08  E-value=17  Score=29.41  Aligned_cols=154  Identities=12%  Similarity=0.109  Sum_probs=78.7

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHH---HHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCCCC
Q 026522           14 NGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLG---LVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIP   90 (237)
Q Consensus        14 n~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~---~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~   90 (237)
                      ..+.++..+.++.+.+.-.   .-+++- .+....+.   .+.+....++.+|+-.+.       +-+ ..+...++|++
T Consensus        15 ~~d~~~~~~~~~~~~~~G~---~~i~l~-~~~~~~~~~i~~i~~~~~~~l~vg~g~~~-------~~~-~i~~a~~~Gad   82 (212)
T 2v82_A           15 GITPDEALAHVGAVIDAGF---DAVEIP-LNSPQWEQSIPAIVDAYGDKALIGAGTVL-------KPE-QVDALARMGCQ   82 (212)
T ss_dssp             TCCHHHHHHHHHHHHHHTC---CEEEEE-TTSTTHHHHHHHHHHHHTTTSEEEEECCC-------SHH-HHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHHHHCCC---CEEEEe-CCChhHHHHHHHHHHhCCCCeEEEecccc-------CHH-HHHHHHHcCCC
Confidence            4466777777776654211   123332 22212223   333322235777764332       112 57899999999


Q ss_pred             eEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEccccc
Q 026522           91 WVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWA  170 (237)
Q Consensus        91 ~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWA  170 (237)
                      +|.+|+..        .+.+    +.+.+.|+..++.+. +.++         +   .+....+.    ..+ ...|.  
T Consensus        83 ~V~~~~~~--------~~~~----~~~~~~g~~~~~g~~-t~~e---------~---~~a~~~G~----d~v-~v~~t--  130 (212)
T 2v82_A           83 LIVTPNIH--------SEVI----RRAVGYGMTVCPGCA-TATE---------A---FTALEAGA----QAL-KIFPS--  130 (212)
T ss_dssp             EEECSSCC--------HHHH----HHHHHTTCEEECEEC-SHHH---------H---HHHHHTTC----SEE-EETTH--
T ss_pred             EEEeCCCC--------HHHH----HHHHHcCCCEEeecC-CHHH---------H---HHHHHCCC----CEE-EEecC--
Confidence            99877632        2233    556678887765432 2211         1   11111111    222 22341  


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccc
Q 026522          171 IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFG  228 (237)
Q Consensus       171 IGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~  228 (237)
                         +    +    ...+.+++.. +...    .++||+-.| +++++|+.+++..|.-
T Consensus       131 ---~----~----~g~~~~~~l~-~~~~----~~ipvia~G-GI~~~~i~~~~~~Ga~  171 (212)
T 2v82_A          131 ---S----A----FGPQYIKALK-AVLP----SDIAVFAVG-GVTPENLAQWIDAGCA  171 (212)
T ss_dssp             ---H----H----HCHHHHHHHH-TTSC----TTCEEEEES-SCCTTTHHHHHHHTCS
T ss_pred             ---C----C----CCHHHHHHHH-Hhcc----CCCeEEEeC-CCCHHHHHHHHHcCCC
Confidence               1    1    1124444432 2221    158999999 9999999999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d1r2ra_	246	c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Or	9e-47
d1b9ba_	252	c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga	5e-46
d1mo0a_	257	c.1.1.1 (A:) Triosephosphate isomerase {Nematode (	5e-44
d1neya_	247	c.1.1.1 (A:) Triosephosphate isomerase {Baker's ye	2e-43
d1o5xa_	246	c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium	2e-42
d2btma_	251	c.1.1.1 (A:) Triosephosphate isomerase {Bacillus s	2e-42
d1n55a_	249	c.1.1.1 (A:) Triosephosphate isomerase {Leishmania	1e-40
d1m6ja_	260	c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba	6e-40
d1aw1a_	255	c.1.1.1 (A:) Triosephosphate isomerase {Vibrio mar	2e-38
d1kv5a_	249	c.1.1.1 (A:) Triosephosphate isomerase {Trypanosom	5e-37
d1trea_	255	c.1.1.1 (A:) Triosephosphate isomerase {Escherichi	7e-37
d1w0ma_	226	c.1.1.1 (A:) Triosephosphate isomerase {Thermoprot	7e-24
d1hg3a_	224	c.1.1.1 (A:) Triosephosphate isomerase {Archaeon P	4e-17

>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 246

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  153 bits (387), Expect = 9e-47
 Identities = 119/213 (55%), Positives = 149/213 (69%), Gaps = 3/213 (1%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
           RKFFVGGNWK NG  + + ++++ LN  +VP+    EVV +PP  ++   +  L P   V
Sbjct: 2   RKFFVGGNWKMNGRKKNLGELITTLNAAKVPAD--TEVVCAPPTAYIDFARQKLDPKIAV 59

Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
           AAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+ALS+GL
Sbjct: 60  AAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGL 119

Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QA
Sbjct: 120 GVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 179

Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QEVH +LR WL +N S  +A +TRIIYGG S+ 
Sbjct: 180 QEVHEKLRGWLKSNVSDAVAQSTRIIYGG-SVT 211

>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]} Length = 252

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermotoga maritima [TaxId: 2336]

 Score =  151 bits (382), Expect = 5e-46
 Identities = 100/216 (46%), Positives = 125/216 (57%), Gaps = 5/216 (2%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSL-RPGFH 61
           RK  + GNWK + T  E KK VS+L   ++      E+VV PPF  L  V   L      
Sbjct: 2   RKLILAGNWKMHKTISEAKKFVSLLVN-ELHDVKEFEIVVCPPFTALSEVGEILSGRNIK 60

Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           + AQN + +  GAFTGEIS  ML  + + +VI+GHSERR I  E +EF+  KV   L +G
Sbjct: 61  LGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKG 120

Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKA--IADRVSSWSNIVLAYEPVWAIGTGKVATP 179
           +  I CVGETLE+RE G T  VV  Q +             +V+AYEPVWAIGTG+VATP
Sbjct: 121 MTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATP 180

Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
            QAQEVH  +RK L      E A + RI+YGG SI 
Sbjct: 181 QQAQEVHAFIRKLLSEMYDEETAGSIRILYGG-SIK 215

>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 257

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score =  146 bits (369), Expect = 5e-44
 Identities = 117/215 (54%), Positives = 144/215 (66%), Gaps = 3/215 (1%)

Query: 1   MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
           + RKFFVGGNWK NG    V  IV+ LN     SS  V+VVV+PP  +L   KS L+ G 
Sbjct: 9   LTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSS--VDVVVAPPAPYLAYAKSKLKAGV 66

Query: 61  HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
            VAAQNC+    GAFTGEIS  M+ +L + WVILGHSERR +  E +  + +K  +AL  
Sbjct: 67  LVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEA 126

Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
           G+KV+ C+GE LE+REAG T DV   Q +AI D+  SW NIV+AYEPVWAIGTGK A+  
Sbjct: 127 GIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGE 186

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQEVH  +R +L    SP +A ATRIIYGG S+ 
Sbjct: 187 QAQEVHEWIRAFLKEKVSPAVADATRIIYGG-SVT 220

>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 247

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  144 bits (364), Expect = 2e-43
 Identities = 100/214 (46%), Positives = 143/214 (66%), Gaps = 4/214 (1%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-GFH 61
           R FFVGGN+K NG+ + +K+IV  LN   +P +  VEVV+ PP  +L    S ++     
Sbjct: 2   RTFFVGGNFKLNGSKQSIKEIVERLNTASIPEN--VEVVICPPATYLDYSVSLVKKPQVT 59

Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           V AQN ++K  GAFTGE S + + ++   +VILGHSERR   +E ++F+ DK  +AL QG
Sbjct: 60  VGAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQG 119

Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQ 181
           + VI C+GETLE+++AG T+DVV  Q  A+ + V  ++N+V+AYEPVWAIGTG  ATP  
Sbjct: 120 VGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVWAIGTGLAATPED 179

Query: 182 AQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           AQ++H  +RK+L +    + A+  RI+YGG S N
Sbjct: 180 AQDIHASIRKFLASKLGDKAASELRILYGG-SAN 212

>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]} Length = 246

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Plasmodium falciparum [TaxId: 5833]

 Score =  142 bits (359), Expect = 2e-42
 Identities = 92/213 (43%), Positives = 128/213 (60%), Gaps = 2/213 (0%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
           RK+FV  NWKCNGT E +K + +  N      S + +VVV P  V     +  L+  F  
Sbjct: 1   RKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKL-DVVVFPVSVHYDHTRKLLQSKFST 59

Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
             QN      G++TGE+SAE+  +L I +VI+GH ERR   +E +E V +K+  +L   L
Sbjct: 60  GIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNL 119

Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
           K + C GE+LEQRE   T++V+  Q KA  D + ++ N++L YEP+WAIGTGK ATP QA
Sbjct: 120 KAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQA 179

Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           Q VH E+RK +      + A   RI+YGG S+N
Sbjct: 180 QLVHKEIRKIVKDTCGEKQANQIRILYGG-SVN 211

>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]} Length = 251

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  142 bits (358), Expect = 2e-42
 Identities = 94/216 (43%), Positives = 122/216 (56%), Gaps = 5/216 (2%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLG-LVKSSLRPGFH 61
           RK  + GNWK NGT  E  + V  +  G VP +D V  VV  PF+FL  LV+++      
Sbjct: 1   RKPIIAGNWKMNGTLAEAVQFVEDVK-GHVPPADEVISVVCAPFLFLDRLVQAADGTDLK 59

Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           + AQ       GA+TGE+S  ML +L + +VILGHSERR +  E +E V  KV  A ++G
Sbjct: 60  IGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRG 119

Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKA--IADRVSSWSNIVLAYEPVWAIGTGKVATP 179
           L  I C GE+LE+REAG T  VVA+Q +              V+AYEP+WAIGTGK +TP
Sbjct: 120 LIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTP 179

Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
             A  V   +R  +     PE A A RI YGG S+ 
Sbjct: 180 EDANSVCGHIRSVVSRLFGPEAAEAIRIQYGG-SVK 214

>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} Length = 249

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Leishmania mexicana [TaxId: 5665]

 Score =  137 bits (346), Expect = 1e-40
 Identities = 110/215 (51%), Positives = 142/215 (66%), Gaps = 5/215 (2%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
            +     NWKCNGT   ++K+V V NE     S  V+ VV+P FV + LV++ LR   +V
Sbjct: 3   PQPIAAANWKCNGTTASIEKLVQVFNEH--TISHDVQCVVAPTFVHIPLVQAKLRNPKYV 60

Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
            +    + K GAFTGE+S  +L ++ + WVILGHSERR    E +E V  KV+ A  QG 
Sbjct: 61  ISAQNAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGF 120

Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPA 180
            VIAC+GETL+QREA  T  VV +QT AIA +++   W+ +VLAYEPVWAIGTGKVATP 
Sbjct: 121 MVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPE 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQEVH  LRKW+  N   ++AA  RI+YGG S+N
Sbjct: 181 QAQEVHLLLRKWVSENIGTDVAAKLRILYGG-SVN 214

>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]} Length = 260

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Entamoeba histolytica [TaxId: 5759]

 Score =  136 bits (342), Expect = 6e-40
 Identities = 113/221 (51%), Positives = 144/221 (65%), Gaps = 10/221 (4%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEG-QVPSSDVVEVVVSPPFVFLGLVK-----SSL 56
            KF VGGNWKCNGT   ++ +   +        +  VEV+V  PF+++  V+      + 
Sbjct: 3   GKFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEAN 62

Query: 57  RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAY 116
                V+A+N W K G A+TGE+   MLV+ ++P+VILGHSERR I +E NE V +KV  
Sbjct: 63  GANILVSAENAWTKSG-AYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKV 121

Query: 117 ALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTG 174
           A+  GLKVIAC+GET  QR A  T +VVAAQ KAI +     +W NI+LAYEPVWAIGTG
Sbjct: 122 AIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTG 181

Query: 175 KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           K ATP QAQEVH  +RKW+  N S E+A ATRI YGG S+N
Sbjct: 182 KTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGG-SVN 221

>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]} Length = 255

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Vibrio marinus [TaxId: 90736]

 Score =  132 bits (332), Expect = 2e-38
 Identities = 85/218 (38%), Positives = 120/218 (55%), Gaps = 8/218 (3%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR---PG 59
           R   V GNWK NG+ E V  +++ LN  ++     V+V V+PP +F+ L + +L      
Sbjct: 1   RHPVVMGNWKLNGSKEMVVDLLNGLNA-ELEGVTGVDVAVAPPALFVDLAERTLTEAGSA 59

Query: 60  FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
             + AQN  +   GAFTG++S  ML       +I+GHSERR    E +EFV  K A+   
Sbjct: 60  IILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKE 119

Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVA 177
            GL  + C+GE+  Q EAG TM V A Q  A+ +   V +    ++AYEP+WAIGTGK A
Sbjct: 120 NGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAA 179

Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           T   AQ +H ++R   +A  S  +A    I YGG S+ 
Sbjct: 180 TAEDAQRIHAQIRAH-IAEKSEAVAKNVVIQYGG-SVK 215

>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]} Length = 249

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Trypanosoma brucei [TaxId: 5691]

 Score =  128 bits (322), Expect = 5e-37
 Identities = 94/215 (43%), Positives = 131/215 (60%), Gaps = 5/215 (2%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
            +     NWKCNG+ + + +++ + N   +     V+ VV+  FV L + K  L     V
Sbjct: 3   PQPIAAANWKCNGSQQSLSELIDLFNSTSINHD--VQCVVASTFVHLAMTKERLSHPKFV 60

Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
            A    + K GAFTGE+S  +L +  + W++LGHSERR    E NE V DKVA A++ G 
Sbjct: 61  IAAQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGF 120

Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPA 180
            VIAC+GETL++RE+G T  VV  Q  AIA   + + W+ +V+AYEPVWAIGTGKVATP 
Sbjct: 121 MVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQ 180

Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           QAQE H  +  W+ +    ++A   RI+YGG S+N
Sbjct: 181 QAQEAHALISSWVSSKIGADVAGELRILYGG-SVN 214

>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score =  128 bits (321), Expect = 7e-37
 Identities = 87/216 (40%), Positives = 119/216 (55%), Gaps = 6/216 (2%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-GFH 61
           R   V GNWK NG+   V ++VS L + ++       V ++PP +++ + K         
Sbjct: 2   RHPLVMGNWKLNGSRHMVHELVSNLRK-ELAGVAGCAVAIAPPEMYIDMAKREAEGSHIM 60

Query: 62  VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
           + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    E +E +  K A    QG
Sbjct: 61  LGAQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQG 120

Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATP 179
           L  + C+GET  + EAG T +V A Q  A+       ++   V+AYEPVWAIGTGK ATP
Sbjct: 121 LTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATP 180

Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
           AQAQ VH  +R   +A     IA    I YGG S+N
Sbjct: 181 AQAQAVHKFIRDH-IAKVDANIAEQVIIQYGG-SVN 214

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} Length = 226

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

 Score = 93.4 bits (231), Expect = 7e-24
 Identities = 50/210 (23%), Positives = 75/210 (35%), Gaps = 30/210 (14%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
           R   +  N+K  G     + +       +      V +VV+P  + LGLV  S+     V
Sbjct: 2   RLPILIINFKAYGEAAGKRAVELAKAAERAARELGVNIVVAPNHLELGLVSQSVD--IPV 59

Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
            AQ   V+ GGA T  +S E +       VIL HSE  L LN+L       VA A S GL
Sbjct: 60  YAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLA----RLVAKAKSLGL 115

Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
            V+ C  +                         ++     +A EP   IGTG+  +  + 
Sbjct: 116 DVVVCAPDPRTSLA------------------AAALGPHAVAVEPPELIGTGRAVSRYKP 157

Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGGI 212
           + +   +                 +I G  
Sbjct: 158 EAIVETVGLV------SRHFPEVSVITGAG 181

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 224

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

 Score = 75.0 bits (183), Expect = 4e-17
 Identities = 37/209 (17%), Positives = 74/209 (35%), Gaps = 30/209 (14%)

Query: 3   RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
           ++  +  N+K        + +       +V     V +VV+P  V L ++  S+     V
Sbjct: 4   KEPIIAINFKTYIEATGKRALEIAKAAEKVYKETGVTIVVAPQLVDLRMIAESVE--IPV 61

Query: 63  AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
            AQ+    K G+ TG +  E +        +L HSE R+    +   +   +  A   GL
Sbjct: 62  FAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRM----ILADLEAAIRRAEEVGL 117

Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
             + C                        +  V++ +   +A EP   IGTG   + A+ 
Sbjct: 118 MTMVCSNNPAV------------------SAAVAALNPDYVAVEPPELIGTGIPVSKAKP 159

Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
           + +   +          ++    +++ G 
Sbjct: 160 EVITNTVELV------KKVNPEVKVLCGA 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1r2ra_	246	Triosephosphate isomerase {Rabbit (Oryctolagus cun	100.0
d1neya_	247	Triosephosphate isomerase {Baker's yeast (Saccharo	100.0
d1b9ba_	252	Triosephosphate isomerase {Thermotoga maritima [Ta	100.0
d1mo0a_	257	Triosephosphate isomerase {Nematode (Caenorhabditi	100.0
d1o5xa_	246	Triosephosphate isomerase {Plasmodium falciparum [	100.0
d2btma_	251	Triosephosphate isomerase {Bacillus stearothermoph	100.0
d1n55a_	249	Triosephosphate isomerase {Leishmania mexicana [Ta	100.0
d1trea_	255	Triosephosphate isomerase {Escherichia coli [TaxId	100.0
d1kv5a_	249	Triosephosphate isomerase {Trypanosoma brucei [Tax	100.0
d1aw1a_	255	Triosephosphate isomerase {Vibrio marinus [TaxId:	100.0
d1m6ja_	260	Triosephosphate isomerase {Entamoeba histolytica [	100.0
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	100.0
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	100.0
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	89.98
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	89.85
d1bqca_	302	Beta-mannanase {Thermomonospora fusca [TaxId: 2021	86.34
d1vjza_	325	Endoglucanase homologue TM1752 {Thermotoga maritim	86.33
d1jfxa_	217	Streptomyces lysozyme {Streptomyces coelicolor, "m	85.6
d2j8ga2	189	N-terminal domain of endolysin {Bacteriophage cp-1	81.47

>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=3e-87  Score=589.36  Aligned_cols=221  Identities=53%  Similarity=0.879  Sum_probs=208.5

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCH
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISA   81 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa   81 (237)
                      .||+||+||||||++..++.+|++.+.....  ..++++++|||+++|..+.....++|.+||||||+.+.||||||||+
T Consensus         1 SrK~~IagNWKMN~~~~~~~~~~~~l~~~~~--~~~~~vii~Pp~~~l~~~~~~~~s~I~iGAQn~~~~~~GA~TGeiSa   78 (246)
T d1r2ra_           1 SRKFFVGGNWKMNGRKKNLGELITTLNAAKV--PADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISP   78 (246)
T ss_dssp             CCCEEEEEECCBCCCHHHHHHHHHHHHHSCC--CTTEEEEEECCGGGHHHHHHHSCTTSEEEESCCCSSSSBSCTTCCCH
T ss_pred             CCCeEEEEecccCCCHHHHHHHHHHHHhccC--CCCCEEEEECCHHHHHHHHHhccCCcceeceeeeeeccccccccccH
Confidence            4899999999999999999999999876432  25789999999999988776655889999999999999999999999


Q ss_pred             HHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCe
Q 026522           82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNI  161 (237)
Q Consensus        82 ~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~i  161 (237)
                      .||+|+||+||||||||||++|+|||++|++|+++|+++||+||+|||||+++|++|+|.+++.+||+.++++++..+++
T Consensus        79 ~mL~d~G~~~viiGHSERR~~f~Etd~~i~~K~~~al~~gl~pIlCVGEt~~er~~g~t~~~l~~Ql~~~l~~~~~~~~i  158 (246)
T d1r2ra_          79 GMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKV  158 (246)
T ss_dssp             HHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHTCSCGGGE
T ss_pred             HHHHHHhhhhhhhcchhhhhhcCCCHHHHHHHHHHhhccCceEEEEecCccccccccchhhhHHHHHHHHhhcccccceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888777899


Q ss_pred             EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          162 VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       162 iIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      +||||||||||||++|+|++++++|.+||++|.+.|+...++++|||||| ||||+|+.+|+.+
T Consensus       159 iiAYEPvWAIGTG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGG-SV~~~N~~~i~~~  221 (246)
T d1r2ra_         159 VLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGG-SVTGATCKELASQ  221 (246)
T ss_dssp             EEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECS-CCCTTTHHHHHTS
T ss_pred             EEecCceeeccCCCCccchhhhhhHHHHHHHHHHhhhHhhcCcccEEecC-CCCHHHHHHHhcC
Confidence            99999999999999999999999999999999999998888999999999 9999999999753

>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-87  Score=590.92  Aligned_cols=221  Identities=46%  Similarity=0.776  Sum_probs=210.6

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      .||+||+||||||++.+++.+|++.+.....  ..+++++|||||++|..+.+.+. +++.+||||||+.+.||||||||
T Consensus         1 sRk~~IagNWKMN~~~~~~~~~~~~l~~~~~--~~~~~v~i~Pp~~~L~~~~~~~~~~~i~iGAQn~~~~~~GA~TGeiS   78 (247)
T d1neya_           1 ARTFFVGGNFKLNGSKQSIKEIVERLNTASI--PENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENS   78 (247)
T ss_dssp             CCCEEEEEECCBCCCHHHHHHHHHHHHHSCC--CTTEEEEEECCGGGHHHHHHHCCCTTEEEEESCCCSSSSBSCTTCCC
T ss_pred             CCCcEEEEeccccCCHHHHHHHHHHHHccCC--CCCceEEEECCHHHHHHHHHHHhhccccccccccccccccchhhhhh
Confidence            4899999999999999999999999976432  25799999999999999998887 78999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+|||||+++|++|++.+++.+|+...++++...++
T Consensus        79 a~mLkd~G~~yviIGHSERR~~f~Etd~~i~~K~~~al~~gl~pIlCVGEtle~r~~~~~~~~~~~Ql~~~l~~~~~~~~  158 (247)
T d1neya_          79 VDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTN  158 (247)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTTCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHhhccchhhhcchhhhhhccchHHHHHHHHHHHhhcCceEEEEecchhhhhccccchhhhHHHHHhhhcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998877889


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      ++||||||||||||++|+|++++++|++||+++.+.++...++++|||||| ||||+|+.+|+.+
T Consensus       159 iiIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~iLYGG-SV~~~N~~~i~~~  222 (247)
T d1neya_         159 VVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGG-SANGSNAVTFKDK  222 (247)
T ss_dssp             EEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEES-SCCTTTGGGGTTC
T ss_pred             eEEEecchhcccCCcccChhhhhhhhHHHHHHHHHhhhhhhcccCcEEEeC-CCCHHHHHHHhcC
Confidence            999999999999999999999999999999999999998888899999999 9999999998765

>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.1e-87  Score=588.86  Aligned_cols=221  Identities=46%  Similarity=0.674  Sum_probs=208.8

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      +||++|+||||||++.+++.+|++.+..... ..++++++|||||++|..+.+.+. +++.+||||||+.+.||||||||
T Consensus         1 sRK~iIagNWKMN~~~~~~~~~~~~l~~~~~-~~~~~~vvi~Pp~~~L~~~~~~~~~~~i~igaQn~~~~~~GA~TGeIS   79 (252)
T d1b9ba_           1 TRKLILAGNWKMHKTISEAKKFVSLLVNELH-DVKEFEIVVCPPFTALSEVGEILSGRNIKLGAQNVFYEDQGAFTGEIS   79 (252)
T ss_dssp             CCSCEEEEECCBCCCHHHHHHHHHHHHHHTS-SCCSSEEEEECCGGGHHHHHHHHTTSSSEEEESCCCSSSSBSCTTCCC
T ss_pred             CCCeEEEEecccCCCHHHHHHHHHHHHHhcc-CcCCcEEEEECCHHHHHHHHHHHhhcccchhhhhcccccCCccccccc
Confidence            4899999999999999999999999865332 335799999999999999998887 78999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SW  158 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~  158 (237)
                      ++||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.+++.+||...+.+++  ..
T Consensus        80 a~mL~d~G~~~viiGHSERR~~~~Etd~~i~~K~~~al~~gl~pIlCIGE~~~~r~~g~t~~~l~~Ql~~~l~~~~~~~~  159 (252)
T d1b9ba_          80 PLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEA  159 (252)
T ss_dssp             HHHHHTTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHhhcchheecchhhhhhhcccCHHHHHHHHHHHHCCCeEEEEecccchhhhccchHHHHHHHHHhhhcccchhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998875  47


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      ++++|||||+||||||++|+|++++++|++||++|+++++.+.++++|||||| ||||+|+.+|+.
T Consensus       160 ~~iiIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGG-SV~~~N~~~i~~  224 (252)
T d1b9ba_         160 KRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGG-SIKPDNFLGLIV  224 (252)
T ss_dssp             TTCEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEES-SCCHHHHTTTSS
T ss_pred             cceEEEeccccccccccCCChHHHHHHHHHHHHHHHHhccccccCcccEEEcC-CCCHHHHHHHhc
Confidence            79999999999999999999999999999999999999998888999999999 999999999864

>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-85  Score=581.75  Aligned_cols=222  Identities=52%  Similarity=0.825  Sum_probs=210.0

Q ss_pred             CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccC
Q 026522            1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      |+||+||+||||||++.+++.+|++.+....  ...+++++|||||++|..+.+.+.+++.+||||||+.+.||||||||
T Consensus         9 M~rk~~I~gNWKMN~~~~~~~~~~~~l~~~~--~~~~~~vvi~Pp~~~L~~~~~~~~s~i~lGAQn~s~~~~GA~TGeiS   86 (257)
T d1mo0a_           9 LTRKFFVGGNWKMNGDYASVDGIVTFLNASA--DNSSVDVVVAPPAPYLAYAKSKLKAGVLVAAQNCYKVPKGAFTGEIS   86 (257)
T ss_dssp             SCSCEEEEEECCBCCCHHHHHHHHHHHHHSC--CCTTEEEEEECCGGGHHHHHHHSCTTEEEEESCCCSSSSBSCTTCCC
T ss_pred             CCCCcEEEEEcccCCCHHHHHHHHHHHHhcC--CCCCCeEEEECCchhHHHHHHhhccceEeecceeeeccccccccccc
Confidence            8899999999999999999999999887643  23678999999999999988776688999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN  160 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~  160 (237)
                      |+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|+.|++.+++.+|+...++.....++
T Consensus        87 a~mL~d~G~~yviiGHSERR~~~~Etd~~i~~K~~~al~~~l~pIlCvGE~~~~~~~~~~~~~~~~Ql~~~~~~~~~~~~  166 (257)
T d1mo0a_          87 PAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWEN  166 (257)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTTCCSTT
T ss_pred             HHHHHHhCcceeeecchhhhhhhcchHHHHHHHHHHHhhccceEEEeeccccccccccchhheehhhhhccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987666789


Q ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      ++||||||||||||++|+|++++++|.+||+.+.+.++..+++++|||||| ||||+|+.+++.+
T Consensus       167 iiIAYEPvWAIGtG~~a~~~~i~e~~~~Ir~~l~~~~~~~~~~~~~iLYGG-SV~~~N~~~i~~~  230 (257)
T d1mo0a_         167 IVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGG-SVTADNAAELGKK  230 (257)
T ss_dssp             EEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEES-SCCTTTHHHHTTS
T ss_pred             eEEEecchhhcccccccchhhhhhHHHHHHHHHHHhhCHhhcCcccEEeeC-CcCHHHHHHHhcC
Confidence            999999999999999999999999999999999999998888899999999 9999999998754

>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.5e-84  Score=572.31  Aligned_cols=220  Identities=41%  Similarity=0.680  Sum_probs=208.7

Q ss_pred             CcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCHH
Q 026522            3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAE   82 (237)
Q Consensus         3 r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~   82 (237)
                      ||++|+||||||++.+++.+|++.+.+... ...++++++|||+++|..+.+...++|.+||||||+.+.|||||||||.
T Consensus         1 RK~~IiaNWKMN~~~~~~~~~~~~~~~~~~-~~~~~~vvi~P~~~~l~~~~~~~~s~I~lGAQnvs~~~~Ga~TGeiSa~   79 (246)
T d1o5xa_           1 RKYFVAANWKCNGTLESIKSLTNSFNNLDF-DPSKLDVVVFPVSVHYDHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSAE   79 (246)
T ss_dssp             CCEEEEEECCBCCCHHHHHHHHHHHHTSCC-CTTTEEEEEECCGGGHHHHHHHSCTTSEEEESCCCSSCSBSCTTCCCHH
T ss_pred             CCeEEEEecccCCCHHHHHHHHHHHhcccC-CcCCCEEEEECCHHHHHHHHHHhcccchhhhhhhhhhhcccccccccHH
Confidence            799999999999999999999999976432 2357899999999999988776668899999999999999999999999


Q ss_pred             HHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeE
Q 026522           83 MLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIV  162 (237)
Q Consensus        83 mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~ii  162 (237)
                      ||||+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|+.|+|.+++.+|+...++.++..++++
T Consensus        80 mLkd~G~~~viiGHSERR~~~~Etd~~i~~K~~~al~~~l~pI~CiGE~~~~~~~~~~~~~~~~Ql~~~l~~~~~~~~ii  159 (246)
T d1o5xa_          80 IAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVI  159 (246)
T ss_dssp             HHHHTTCCEEEECCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHTTGGGCCCTTSEE
T ss_pred             HHhhcccceeeeccccchhhhccchHHHHHHHHHHHHcccceEEEEecccccccchhhHHHHHHHHHhhhhhhcccccEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887788999


Q ss_pred             EEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          163 LAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       163 IAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      |||||+||||||++|+|++++++|++||+.+++.++...++++|||||| ||||+|+.+|+.
T Consensus       160 IAYEPvWAIGTG~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ilYGG-SV~~~N~~~i~~  220 (246)
T d1o5xa_         160 LVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGG-SVNTENCSSLIQ  220 (246)
T ss_dssp             EEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECS-CCCTTTHHHHHT
T ss_pred             EEecccccccCCCCcccchhhhhhhHHHHHHHHHhhHhhcCcccEEEeC-CCCHhHHHHHhc
Confidence            9999999999999999999999999999999999998888999999999 999999999984

>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.6e-84  Score=572.11  Aligned_cols=222  Identities=41%  Similarity=0.612  Sum_probs=210.0

Q ss_pred             CcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCH
Q 026522            3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISA   81 (237)
Q Consensus         3 r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa   81 (237)
                      |||||+||||||++..++.+|++.+..... ..++++++||||+++|..+.+.+. +++.+||||||+.+.||||||||+
T Consensus         1 RkkiIiaNWKMN~~~~~~~~~~~~l~~~~~-~~~~~~iii~Pp~~~L~~~~~~~~~~~i~vgaQnvs~~~~GA~TGeiSa   79 (251)
T d2btma_           1 RKPIIAGNWKMNGTLAEAVQFVEDVKGHVP-PADEVISVVCAPFLFLDRLVQAADGTDLKIGAQTMHFADQGAYTGEVSP   79 (251)
T ss_dssp             CCCEEEEECCBCCCHHHHHHHHHHHTTTSC-CTTTCEEEEEECGGGHHHHHHHHTTSSEEEEESCCCSSSSBSCTTCCCH
T ss_pred             CCeEEEEecccCCCHHHHHHHHHHHHhhCC-CcCCeEEEEECCHHHHHHHHHHHhcccccccchhhhccccchhhcccCH
Confidence            899999999999999999999999876433 335789999999999999998887 789999999999999999999999


Q ss_pred             HHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCC
Q 026522           82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWS  159 (237)
Q Consensus        82 ~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~~  159 (237)
                      .||+|+||+||||||||||++|+|||++|++|+++++++||+||+||||++++|+.|++.+++..|+...+..+.  ..+
T Consensus        80 ~mlkd~g~~yviiGHSErR~~~~E~~~~i~~K~~~~~~~~l~pI~CiGE~~~e~~~~~~~~~~~~ql~~~~~~~~~~~~~  159 (251)
T d2btma_          80 VMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVK  159 (251)
T ss_dssp             HHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCHHHHT
T ss_pred             HHHHHhCcceeeecchhhhhhhcchHHHHHHHHHHhhcCCCeEEEEecccccccccchhhhHHHHHHHhhhcccchhccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998764  467


Q ss_pred             CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522          160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS  226 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~  226 (237)
                      +++|||||+||||||++|+|++|+++|++||++|.+.++...++++|||||| ||||+|+.+|+.+.
T Consensus       160 ~iiIAYEPvWAIGTG~~a~~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ilYGG-SV~~~N~~~i~~~~  225 (251)
T d2btma_         160 QAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGG-SVKPDNIRDFLAQQ  225 (251)
T ss_dssp             TCEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEES-SCCTTTHHHHHTST
T ss_pred             eEEEEeccccccccccCCChhhhhhhHHHHHHHHHhhcchhhcccCcEEeeC-CCCHhHHHHHhcCC
Confidence            8999999999999999999999999999999999999998888999999999 99999999998764

>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Leishmania mexicana [TaxId: 5665]

Probab=100.00  E-value=6.3e-84  Score=569.12  Aligned_cols=218  Identities=52%  Similarity=0.865  Sum_probs=205.9

Q ss_pred             CcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCH
Q 026522            3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISA   81 (237)
Q Consensus         3 r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa   81 (237)
                      +||||+||||||++.+++.+|++.+.....  ..++++++||||++|..+.+.++ +++.+|||||++ +.|||||||||
T Consensus         3 ~kpiI~aNWKMN~~~~~~~~~~~~~~~~~~--~~~~~iiiaPp~~~L~~~~~~l~~~~i~lgaQn~~~-~~GA~TGevSa   79 (249)
T d1n55a_           3 PQPIAAANWKCNGTTASIEKLVQVFNEHTI--SHDVQCVVAPTFVHIPLVQAKLRNPKYVISAQNAIA-KSGAFTGEVSM   79 (249)
T ss_dssp             CCCEEEEECCSCCCHHHHHHHHHHHHHSCC--CSCCEEEEECCGGGHHHHHHHCCCTTEEEEESCCBS-SCSSCTTCCBH
T ss_pred             CCCEEEEecccCCCHHHHHHHHHHHhccCC--CCCCEEEEeCCHHHHHHHHHHhcCCCceeccccccc-cccchhccccH
Confidence            579999999999999999999999877432  25789999999999999998887 789999999985 67999999999


Q ss_pred             HHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCC
Q 026522           82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWS  159 (237)
Q Consensus        82 ~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~~  159 (237)
                      .||+|+||+||||||||||++|+|||++|++|+++|+++||+||+|||||+++|+.|.+.+++..||...+..+.  .++
T Consensus        80 ~mL~d~g~~yviiGHSERR~~~~Etd~~v~~K~~~al~~~l~pI~CiGE~~~~~~~~~~~~~l~~ql~~~l~~~~~~~~~  159 (249)
T d1n55a_          80 PILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWN  159 (249)
T ss_dssp             HHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCGGGGG
T ss_pred             HHHHHhccceeeeccchhhhhhcccHHHHHHHHHHHHHcCCceEEEecccccccccccceeeehhhhhhhhccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999875  367


Q ss_pred             CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      +++|||||+||||||++|+|++++++|.+||++++++++...++++|||||| ||||+|+.+++.
T Consensus       160 ~iiIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGG-SV~~~N~~~i~~  223 (249)
T d1n55a_         160 QVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGG-SVNAANAATLYA  223 (249)
T ss_dssp             GEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEES-SCCTTTHHHHHT
T ss_pred             ceEEEecceecccCCcccChHHHHHHHHHHHHHHHhhcchhhcCcccEEEcC-CCCHhHHHHHhc
Confidence            9999999999999999999999999999999999999998888999999999 999999999984

>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.8e-84  Score=571.11  Aligned_cols=221  Identities=39%  Similarity=0.591  Sum_probs=205.7

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS   80 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS   80 (237)
                      ||||||+||||||++..++.+|++.+.+... ...+++++|||||++|..+.+.+. ++|.+||||||+.+.||||||||
T Consensus         1 MrkkiIigNWKMN~~~~~~~~l~~~l~~~~~-~~~~~~vvi~Pp~~~L~~~~~~~~~~~i~iGAQn~~~~~~GA~TGeiS   79 (255)
T d1trea_           1 MRHPLVMGNWKLNGSRHMVHELVSNLRKELA-GVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVNLNLSGAFTGETS   79 (255)
T ss_dssp             CCCCEEEEECCBCCCHHHHHHHHHHHHHHHT-TCCSCEEEEECCTTTHHHHHHHHTTSSEEEEESCCCSCSSBSCTTCCC
T ss_pred             CCCCEEEEEcccCCCHHHHHHHHHHHHhhcc-ccCCCeEEEeCCHHHHHHHHHhhccCceeeechhcccccccccccchh
Confidence            5999999999999999999999998865322 335799999999999999998887 78999999999999999999999


Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CC
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SW  158 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~  158 (237)
                      ++||+|+||+||||||||||++|+|||++|++|+++|+++||+|||||||++++|+.|++.+++.+||+.+++.++  ++
T Consensus        80 a~mlkd~G~~~viiGHSERR~~~~E~~~~i~~K~~~al~~~l~pIlCvGE~~~~r~~~~~~~~~~~Ql~~~~~~~~~~~~  159 (255)
T d1trea_          80 AAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAF  159 (255)
T ss_dssp             HHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHhccchhhhccccccccccccCHHHHHHHHHHHhhheeeEEecccchhhhcchhhhhhhhhhhhhhhcccchhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998764  47


Q ss_pred             CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      ++++|||||+||||||++|+|++++++|++||+.|.+.++ ..++++|||||| ||||+|+.+++.+
T Consensus       160 ~~iiIAYEPvWAIGtG~~a~~~~~~~~~~~ir~~l~~~~~-~~~~~v~iLYGG-SV~~~N~~~i~~~  224 (255)
T d1trea_         160 EGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDA-NIAEQVIIQYGG-SVNASNAAELFAQ  224 (255)
T ss_dssp             TTCEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHCEEEECS-CCCTTTHHHHHTS
T ss_pred             cCcEEEecchhhcccccccCcchhhhhHHHHHHHHhhhch-hhcCCccEEecC-CcCHhHHHHHhcC
Confidence            8999999999999999999999999999999999987654 357889999999 9999999998753

>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=3.6e-83  Score=564.29  Aligned_cols=221  Identities=44%  Similarity=0.769  Sum_probs=207.2

Q ss_pred             CcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCH
Q 026522            3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISA   81 (237)
Q Consensus         3 r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa   81 (237)
                      +||||+||||||++.+++.+|++.+....  ...+++++|||||++|..+.+.+. +.+.+|||||++ +.||||||||+
T Consensus         3 ~kpiIaaNWKMN~s~~~~~~~~~~~~~~~--~~~~~~vii~Pp~~~L~~~~~~l~~~~i~igaQn~~~-~~GA~TGeiS~   79 (249)
T d1kv5a_           3 PQPIAAANWKCNGSQQSLSELIDLFNSTS--INHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAIA-KSGAFTGEVSL   79 (249)
T ss_dssp             CCCEEEEECCBCCCHHHHHHHHHHHHTCC--CCSCCEEEEECCGGGHHHHHHHCCCTTEEEEESCCBS-SCBSCTTCCBH
T ss_pred             CCCEEEEecccCCCHHHHHHHHHHHHhcC--CCCCeEEEeCCCHHHHHHHHHHHhhhhhhhhcccccc-ccccccccccH
Confidence            68999999999999999999999887642  235789999999999999998887 789999999985 68999999999


Q ss_pred             HHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCC
Q 026522           82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWS  159 (237)
Q Consensus        82 ~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~~  159 (237)
                      .||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|+.|.+.+++..|+...++.+.  ..+
T Consensus        80 ~mLkd~G~~yvIiGHSERR~~~~Et~~~i~~K~~~~~~~~l~pI~CiGE~~~~~~~~~~~~~l~~Ql~~~~~~~~~~~~~  159 (249)
T d1kv5a_          80 PILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWA  159 (249)
T ss_dssp             HHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHTCCGGGGG
T ss_pred             HHHHhhccchhhhcchhhhhhhcccHHHHHHHHHHHHhcCCceEEEeccccccccccchHHHHHHHHHhhhccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998764  367


Q ss_pred             CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccc
Q 026522          160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSF  227 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~  227 (237)
                      +++|||||+||||||++|+|++++++|.+||+.|++.|+...+.++|||||| ||||+|+.+++.+.-
T Consensus       160 ~iiIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~~~ilYGG-SV~~~N~~~i~~~~~  226 (249)
T d1kv5a_         160 KVVIAYEPVWAIGTGKVATPQQAQEAHALISSWVSSKIGADVAGELRILYGG-SVNGKNARTLYQQRD  226 (249)
T ss_dssp             GEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEES-SCCTTTHHHHHTSTT
T ss_pred             ceEEecCceecccccccccchhhhhhhHHHHHHHHHhcChhhcCCCcEEEcC-CCCHhHHHHHhcCCC
Confidence            8999999999999999999999999999999999999998888899999999 999999999987643

>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Vibrio marinus [TaxId: 90736]

Probab=100.00  E-value=4.3e-83  Score=565.49  Aligned_cols=220  Identities=37%  Similarity=0.603  Sum_probs=203.6

Q ss_pred             CcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC---CCcEEeeeccccccCcCccccc
Q 026522            3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR---PGFHVAAQNCWVKKGGAFTGEI   79 (237)
Q Consensus         3 r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~---~~i~igAQnv~~~~~GA~TGei   79 (237)
                      |||||+||||||++..++.+|++.+..... ...++++++|||+++|..+.+.+.   ++|.+||||||+.+.|||||||
T Consensus         1 Rk~iIiaNWKMn~~~~~~~~~~~~l~~~~~-~~~~~~ivi~Pp~~~L~~~~~~l~~~~~~I~lgAQn~~~~~~Ga~TGei   79 (255)
T d1aw1a_           1 RHPVVMGNWKLNGSKEMVVDLLNGLNAELE-GVTGVDVAVAPPALFVDLAERTLTEAGSAIILGAQNTDLNNSGAFTGDM   79 (255)
T ss_dssp             CCCEEEEECCBCCCHHHHHHHHHHHHHHTT-TCCSSEEEEECCGGGHHHHHHHHHHHTCCCEEEESCCCSCSSBSCTTCC
T ss_pred             CCeEEEEEcCcCCCHHHHHHHHHHHHHhcC-CCCCCEEEEECCHHHHHHHHHHHhccCCeeEeccccchhhccccccchh
Confidence            899999999999999999999999865332 335789999999999998876553   6899999999999999999999


Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--C
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--S  157 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~  157 (237)
                      ||.||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.+++.+|++.++..+.  +
T Consensus        80 Sa~mlkd~g~~yviiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCVGE~~~~r~~~~~~~vv~~Ql~~~~~~~~~~~  159 (255)
T d1aw1a_          80 SPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEA  159 (255)
T ss_dssp             CHHHHGGGTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHhhhcceeeecchhccccccccHHHHHHHHHHHHHhccceEEEeccchhhhhcccceeeeehhhhhhhcchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988764  4


Q ss_pred             CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       158 ~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      +++++|||||+||||||++|++++++++|.+||+.+.+.++ ..++++|||||| ||||+|+.+++.+
T Consensus       160 ~~~iiIAYEPvWAIGtg~~a~~~~i~~~~~~i~~~~~~~~~-~~~~~i~ilYGG-SV~~~N~~~i~~~  225 (255)
T d1aw1a_         160 LEGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEKSE-AVAKNVVIQYGG-SVKPENAAAYFAQ  225 (255)
T ss_dssp             GTTCEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHTTCH-HHHHHCEEEECS-CCCTTTHHHHHTS
T ss_pred             cccceEEecchhcccCCcccchhhhhHHHHHHHHhhhcccc-cccccceEEEcC-CCCHhHHHHHhcC
Confidence            78999999999999999999999999999999999988654 457889999999 9999999998854

>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Entamoeba histolytica [TaxId: 5759]

Probab=100.00  E-value=6.5e-83  Score=565.72  Aligned_cols=222  Identities=52%  Similarity=0.827  Sum_probs=203.9

Q ss_pred             CCcceEEEecccCCCHHHHHHHHHHHhcCCCC-CCCCceEEEcCccccHHHHHHhcC-----CCcEEeeeccccccCcCc
Q 026522            2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVP-SSDVVEVVVSPPFVFLGLVKSSLR-----PGFHVAAQNCWVKKGGAF   75 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~-~~~~~~v~i~Pp~~~L~~~~~~~~-----~~i~igAQnv~~~~~GA~   75 (237)
                      .||+||+||||||++.+++.+|++.+...... ...++++++||||++|+.+.+.+.     +++.+|||||+. +.|||
T Consensus         2 ~~K~iIagNWKMN~~~~~~~~~~~~l~~~~~~~~~~~~~ivi~Pp~~~L~~~~~~~~~~~~~~~i~~gaQn~~~-~~GA~   80 (260)
T d1m6ja_           2 AGKFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANGANILVSAENAWT-KSGAY   80 (260)
T ss_dssp             CSCEEEEEECCBCCCHHHHHHHHHHHHHHCCHHHHTTEEEEEEECGGGHHHHHHHHHTSTTGGGEEEEESCCBS-SSBSC
T ss_pred             CCCeEEEEecccCCCHHHHHHHHHHHHHhccccccCCCcEEEeCChHhHHHHHHHHHhhhcCCceeeehhhccc-cccch
Confidence            37999999999999999999999988653221 124689999999999999877542     579999999985 68999


Q ss_pred             ccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc
Q 026522           76 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV  155 (237)
Q Consensus        76 TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i  155 (237)
                      |||||+.||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.+++..|++.++..+
T Consensus        81 TGeiSa~mLkd~G~~yviiGHSERR~~f~Etd~~i~~K~~~al~~gl~pIlCIGE~~~~re~~~~~~~~~~Ql~~~~~~~  160 (260)
T d1m6ja_          81 TGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAI  160 (260)
T ss_dssp             TTCCBHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             hccccHHHHHhhCcceeeecchhhhhhhcccHHHHHHHHHHHHhcCCcEEEEeccchhhhhcCchHHHHHHHHHhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             C--CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          156 S--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       156 ~--~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      .  ++++++||||||||||||++|+|++|+++|.+||++|.+.++.+.++++|||||| ||||+|+.+++.+
T Consensus       161 ~~~~~~~iiIAYEPvWAIGTG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~v~ilYGG-SV~~~N~~~i~~~  231 (260)
T d1m6ja_         161 SKEAWKNIILAYEPVWAIGTGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGG-SVNPANCNELAKK  231 (260)
T ss_dssp             CTGGGGGEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECS-CCCTTTHHHHHTS
T ss_pred             chhhhhccEEeccceecccCCcccChHHHHHHHHHHHHHHHhhcchhhcCCCcEEEcC-CCCHhHHHHHhCC
Confidence            4  4789999999999999999999999999999999999999998888899999999 9999999998854

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=100.00  E-value=6.9e-59  Score=400.99  Aligned_cols=191  Identities=21%  Similarity=0.245  Sum_probs=163.6

Q ss_pred             CCcceEEEecccCCCH--HHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCccccc
Q 026522            2 GRKFFVGGNWKCNGTP--EEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEI   79 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~--~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGei   79 (237)
                      ||||+|++|||||++.  .++.+|++.+.+..  ...++++++||||++|..+.+.  +++.+|||||++.+.||||||+
T Consensus         3 m~k~iii~NwKmn~~~~~~~~~~~~~~~~~~~--~~~~~~vvvaP~~~~L~~~~~~--~~i~vgaQn~~~~~~Ga~TGei   78 (224)
T d1hg3a_           3 LKEPIIAINFKTYIEATGKRALEIAKAAEKVY--KETGVTIVVAPQLVDLRMIAES--VEIPVFAQHIDPIKPGSHTGHV   78 (224)
T ss_dssp             CCSSEEEEECTBCGGGSHHHHHHHHHHHHHHH--HTTCCEEEEECCHHHHHHHHHS--CSSCBEESCCCSCCSBSCTTCC
T ss_pred             CCCCEEEEEcccCcChHHHHHHHHHHHHHhcc--ccCCceEEEeCCHHHHHhhccc--cceeeeecccccccccchhhee
Confidence            5999999999999865  56677777665532  2257899999999999987654  5799999999999999999999


Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      |+.||+|+||+||||||||||.+|+|+++.+    +.+.++||.||+|+||+.+++.               +.   .++
T Consensus        79 s~~~l~~~g~~~~iiGHSErr~~~~e~~~~i----~~~~~~gl~~i~cv~~~~~~~~---------------~~---~~~  136 (224)
T d1hg3a_          79 LPEAVKEAGAVGTLLNHSENRMILADLEAAI----RRAEEVGLMTMVCSNNPAVSAA---------------VA---ALN  136 (224)
T ss_dssp             CHHHHHHTTCCEEEESCGGGCCBHHHHHHHH----HHHHHHTCEEEEEESSHHHHHH---------------HH---TTC
T ss_pred             chhhccccCcceeeeccccccccccchhHHH----HHHHHcCCceeechhhHHHHHh---------------hh---hcc
Confidence            9999999999999999999999999988776    6678899999999999977653               11   357


Q ss_pred             CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522          160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL  225 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~  225 (237)
                      +++|||||+||||||++++++++++++++||..- +     .++++|||||| ||+++|..+++..
T Consensus       137 ~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~-~-----~~~~v~vlygG-sV~~~n~~~~~~~  195 (224)
T d1hg3a_         137 PDYVAVEPPELIGTGIPVSKAKPEVITNTVELVK-K-----VNPEVKVLCGA-GISTGEDVKKAIE  195 (224)
T ss_dssp             CSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHH-H-----HCTTSEEEEES-SCCSHHHHHHHHH
T ss_pred             cceEEecchHhhccccCCCchhhhhhhhhhhhhh-h-----hccccceEEeC-CcCCHHHHHHHHh
Confidence            8899999999999999999999999999998652 2     35679999999 9999998887654

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=100.00  E-value=1.1e-56  Score=388.41  Aligned_cols=190  Identities=27%  Similarity=0.284  Sum_probs=164.0

Q ss_pred             CCcceEEEecccCCCH--HHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCccccc
Q 026522            2 GRKFFVGGNWKCNGTP--EEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEI   79 (237)
Q Consensus         2 ~r~~~i~~NWKmn~~~--~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGei   79 (237)
                      ||+|+|++|||||++.  +++.+|++.+.+...  ..++++++||||++|..+.+.  .++.+|||||++.+.|+||||+
T Consensus         1 mr~p~ii~N~K~y~~~~g~~~~~la~~~~~~~~--~~~~~v~iaP~~~~l~~~~~~--~~i~v~aQn~~~~~~ga~TG~i   76 (226)
T d1w0ma_           1 MRLPILIINFKAYGEAAGKRAVELAKAAERAAR--ELGVNIVVAPNHLELGLVSQS--VDIPVYAQGADVEAGGAHTAHV   76 (226)
T ss_dssp             CCSSEEEEECTBCGGGSTHHHHHHHHHHHHHHH--HHTCEEEEECCGGGHHHHHTT--CSSCBEESCCSBSSCSSCTTCC
T ss_pred             CCCCEEEEEeCCCcCchhHHHHHHHHHHHhccc--ccCCEEEEeCChHhHHHHhhc--ccceecccccccccccccceee
Confidence            5999999999999876  677888887766321  247899999999999988664  4799999999999999999999


Q ss_pred             CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522           80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS  159 (237)
Q Consensus        80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~  159 (237)
                      |++||+|+||+|||+||||||.+|+|    +++|+++|+++||+||+||||+.++++              ..    .+.
T Consensus        77 s~~~l~~~g~~~viigHsErR~~~~e----~~~~~~~~~~~gl~~ivcvge~~~~~~--------------~~----~~~  134 (226)
T d1w0ma_          77 SLENIKEAGGSGVILNHSEAPLKLND----LARLVAKAKSLGLDVVVCAPDPRTSLA--------------AA----ALG  134 (226)
T ss_dssp             BHHHHHHHTCCEEEECCTTSCCBHHH----HHHHHHHHHHTTCEEEEEESSHHHHHH--------------HH----HTC
T ss_pred             eHhhhcccccceEEeechhhhhhccc----hHHHHHHHHHcCCEEEEecCchHHhhh--------------hh----ccc
Confidence            99999999999999999999999987    455678999999999999999977653              11    256


Q ss_pred             CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522          160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL  224 (237)
Q Consensus       160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~  224 (237)
                      +++|||||+||||||++++++++++++..+|....      .+.++|||||| ||+++|..++..
T Consensus       135 ~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~------~~~~i~vlygG-gV~~~n~~~~~~  192 (226)
T d1w0ma_         135 PHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSR------HFPEVSVITGA-GIESGDDVAAAL  192 (226)
T ss_dssp             CSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHH------HCTTSEEEEES-SCCSHHHHHHHH
T ss_pred             cceeeecchhhccCCCCCChhhhhHhhhhhhhhhc------cCCCceEEEec-CcCChHHHHHHh
Confidence            88999999999999999999999999999886532      25679999999 999999988654

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.98  E-value=2.8  Score=31.87  Aligned_cols=152  Identities=11%  Similarity=0.014  Sum_probs=82.7

Q ss_pred             CccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCC
Q 026522           44 PPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL  122 (237)
Q Consensus        44 Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl  122 (237)
                      ...-.+..+.+... +.+.+--+.......+..........+.+.|++.+++...-.-+...+.++.    ++.+.+.+.
T Consensus        43 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agad~v~~~~~~~~~~~~~~~~~----~~~~~~~~~  118 (222)
T d1y0ea_          43 NTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDEL----VSYIRTHAP  118 (222)
T ss_dssp             ESHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHH----HHHHHHHCT
T ss_pred             CCHHHHHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhHHHcCCCEEEeeccccccccchHHHH----HHHHHHhCC
Confidence            34445555555443 2222322333323334444455667777899999999876654444443333    478888888


Q ss_pred             eEEEEeCCc-HHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccc
Q 026522          123 KVIACVGET-LEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEI  201 (237)
Q Consensus       123 ~pIvCiGEt-~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~  201 (237)
                      .++++.+-+ .+++            ++ ..+    ..-..|.+-+.=..++.....+.  ......|++...       
T Consensus       119 ~~~v~~~~~t~~~a------------~~-~~~----~g~d~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~-------  172 (222)
T d1y0ea_         119 NVEIMADIATVEEA------------KN-AAR----LGFDYIGTTLHGYTSYTQGQLLY--QNDFQFLKDVLQ-------  172 (222)
T ss_dssp             TSEEEEECSSHHHH------------HH-HHH----TTCSEEECTTTTSSTTSTTCCTT--HHHHHHHHHHHH-------
T ss_pred             ceEEeecCCCHHHH------------HH-HHH----cCCCeEEEeccCCcccccCccch--hhHHHHHHHHHh-------
Confidence            888887754 2221            11 111    12224445443222222222222  223455555432       


Q ss_pred             cCcccEEEcCCCC-ChhhHHHHHHcc
Q 026522          202 AAATRIIYGGISI-NVSHVLVHLLLS  226 (237)
Q Consensus       202 a~~i~ILYGG~SV-~~~Na~~~~~~~  226 (237)
                      +.++||+++| ++ +++.+..++..|
T Consensus       173 ~~~iPVia~G-GI~t~~d~~~~~~~G  197 (222)
T d1y0ea_         173 SVDAKVIAEG-NVITPDMYKRVMDLG  197 (222)
T ss_dssp             HCCSEEEEES-SCCSHHHHHHHHHTT
T ss_pred             cCCCcEEEeC-CCCCHHHHHHHHHcC
Confidence            3359999999 99 699999988754

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=89.85  E-value=0.36  Score=39.95  Aligned_cols=147  Identities=15%  Similarity=0.192  Sum_probs=81.3

Q ss_pred             EEcCccccHHHHHHhcCCCcEEeeeccccccCcCcc--c------ccCHHHHHhCCCCeEEecccccccccccCHHHHHH
Q 026522           41 VVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFT--G------EISAEMLVNLEIPWVILGHSERRLILNELNEFVGD  112 (237)
Q Consensus        41 ~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~T--G------eiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~  112 (237)
                      .+-|++-.+..+.+...  ++|-.  |=-.-.|-|.  -      .-+..++|++|++.+.+|--..   =++-|....+
T Consensus        34 GlTPS~g~i~~~~~~~~--iPv~v--MIRPR~GdF~Ys~~E~~~M~~di~~~k~~G~dGvV~G~L~~---dg~iD~~~~~  106 (247)
T d1twda_          34 GLTPSLGVLKSVRQRVT--IPVHP--IIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDV---DGNVDMPRME  106 (247)
T ss_dssp             CBCCCHHHHHHHHHHCC--SCEEE--BCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCT---TSSBCHHHHH
T ss_pred             CCCCCHHHHHHHHHhcC--CCeEE--EEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECC---CCCccHHHHH
Confidence            45688888877776543  32211  1111224333  2      2356788999999999998765   3456666666


Q ss_pred             HHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc-C-CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHH
Q 026522          113 KVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV-S-SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELR  190 (237)
Q Consensus       113 Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i-~-~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR  190 (237)
                      ++..+. .++...+           -+..|.+.++++++ +.+ + ..+++.         =+|...+..+-   ...|+
T Consensus       107 ~L~~~a-~~l~vTF-----------HRAfD~~~d~~~al-~~Li~lG~~rIL---------TSGg~~~a~~G---~~~L~  161 (247)
T d1twda_         107 KIMAAA-GPLAVTF-----------HRAFDMCANPLYTL-NNLAELGIARVL---------TSGQKSDALQG---LSKIM  161 (247)
T ss_dssp             HHHHHH-TTSEEEE-----------CGGGGGCSCHHHHH-HHHHHHTCCEEE---------ECTTSSSTTTT---HHHHH
T ss_pred             HHHHHh-cccCeee-----------ehhhhhhCCHHHHH-HHHHhcCCCeEe---------ccCCCCchhHH---HHHHH
Confidence            665554 4666554           12233333333221 111 0 133432         14555554443   34555


Q ss_pred             HHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522          191 KWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS  226 (237)
Q Consensus       191 ~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~  226 (237)
                      +.+..      ++..-|+-|| +|+++|+.++...|
T Consensus       162 ~L~~~------a~~~iIm~Gg-GI~~~Ni~~l~~~g  190 (247)
T d1twda_         162 ELIAH------RDAPIIMAGA-GVRAENLHHFLDAG  190 (247)
T ss_dssp             HHHTS------SSCCEEEEES-SCCTTTHHHHHHHT
T ss_pred             HHHHh------cCCcEEEecC-CCCHHHHHHHHHcC
Confidence            54421      2233499999 99999999988743

>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Thermomonospora fusca [TaxId: 2021]

Probab=86.34  E-value=1.2  Score=35.76  Aligned_cols=48  Identities=10%  Similarity=-0.115  Sum_probs=39.2

Q ss_pred             HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEe
Q 026522           81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV  128 (237)
Q Consensus        81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCi  128 (237)
                      .+.||++|++.|=+-|.....+....-+.+.+=+..|.++||.+|+.+
T Consensus        38 ~~~i~~~G~N~VRl~~~~~~~~~~~~~~~~~~~v~~a~~~Gi~vildl   85 (302)
T d1bqca_          38 FADIKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLICMLEV   85 (302)
T ss_dssp             HHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHhcCCCEEEEecccccccCcchHHHHHHHHHHHHHCCCEEEEEe
Confidence            578999999999887776555555555667777899999999999988

>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase homologue TM1752
species: Thermotoga maritima [TaxId: 2336]

Probab=86.33  E-value=2.4  Score=33.96  Aligned_cols=56  Identities=11%  Similarity=0.102  Sum_probs=35.7

Q ss_pred             cCcccccCHHHHHhCCCCeEEecccccc-----c--cccc-CHHHHHHHHHHHHHCCCeEEEEe
Q 026522           73 GAFTGEISAEMLVNLEIPWVILGHSERR-----L--ILNE-LNEFVGDKVAYALSQGLKVIACV  128 (237)
Q Consensus        73 GA~TGeiSa~mLkd~G~~~viIGHSERR-----~--~f~E-td~~V~~Kv~~al~~gl~pIvCi  128 (237)
                      +.++-|--...|++.|.+.|=|.=+=++     .  .+++ .=+.+.+-+..|.++||.+||..
T Consensus        18 ~~~~~e~d~~~l~~~G~n~vRlpv~~~~~~~~~~~~~~~~~~l~~ld~~v~~~~~~gi~vildl   81 (325)
T d1vjza_          18 TGNFKEEDFLWMAQWDFNFVRIPMCHLLWSDRGNPFIIREDFFEKIDRVIFWGEKYGIHICISL   81 (325)
T ss_dssp             CCCCCHHHHHHHHHTTCCEEEEEEEGGGTSCSSCTTCCCGGGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             cCCCCHHHHHHHHHcCCCEEEecccHHHccCCCCCCccCHHHHHHHHHHHHHHHHcCCcEEEee
Confidence            3344455677889999999976322111     1  1112 12446666799999999999955

>d1jfxa_ c.1.8.8 (A:) Streptomyces lysozyme {Streptomyces coelicolor, "mueller" dsm3030 [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: 1,4-beta-N-acetylmuraminidase
domain: Streptomyces lysozyme
species: Streptomyces coelicolor, "mueller" dsm3030 [TaxId: 1902]

Probab=85.60  E-value=3.7  Score=31.92  Aligned_cols=121  Identities=14%  Similarity=0.044  Sum_probs=73.3

Q ss_pred             cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 026522           75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGSTMDVVAAQTKAIAD  153 (237)
Q Consensus        75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI-vCiGEt~e~r~~g~~~~vl~~Ql~~~l~  153 (237)
                      |-|.|....||..|+++|||==+|-..+   .|.....-++.|.++||..= +-.....     +..   =.+|.+..+.
T Consensus        13 ~qg~id~~~vk~~gi~fviikat~G~~~---~D~~~~~n~~~A~~aGl~~G~Yhf~~~~-----~~~---~~~qa~~f~~   81 (217)
T d1jfxa_          13 WQGSINWSSVKSAGMSFAYIKATEGTNY---KDDRFSANYTNAYNAGIIRGAYHFARPN-----ASS---GTAQADYFAS   81 (217)
T ss_dssp             GGCSCCHHHHHHTTCCEEEEEEEETTTE---ECTTHHHHHHHHHHTTCEEEEEEECCTT-----TSC---HHHHHHHHHH
T ss_pred             cCCCCCHHHHHHCCCcEEEEEEecCCCc---cChHHHHHHHHHHHcCCeEEEEEEeecC-----CCc---HHHHHHHHHH
Confidence            6789999999999999999977776443   45567778899999999641 2122110     000   0134444454


Q ss_pred             ccCC------CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522          154 RVSS------WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG  211 (237)
Q Consensus       154 ~i~~------~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG  211 (237)
                      .+..      .-++++-+|.--.-+.+...++.+.+..+....+.+.+..+     .-++||.+
T Consensus        82 ~~~~~~~~~~~lp~~lD~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~iY~~  140 (217)
T d1jfxa_          82 NGGGWSRDNRTLPGVLDIEHNPSGAMCYGLSTTQMRTWINDFHARYKARTT-----RDVVIYTT  140 (217)
T ss_dssp             TTCCCCCSSSBCCCEEECCSCSSSCTTTTCCHHHHHHHHHHHHHHHHHHHS-----SCCEEEEC
T ss_pred             HhhccCCCCCcCceEEEEeeccCCCccCCCCHHHHHHHHHHHHHHHHHhhC-----CCCeEecC
Confidence            4321      23567888864332333445677776655544444544333     35899998

>d2j8ga2 c.1.8.8 (A:2-190) N-terminal domain of endolysin {Bacteriophage cp-1 [TaxId: 10747]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: 1,4-beta-N-acetylmuraminidase
domain: N-terminal domain of endolysin
species: Bacteriophage cp-1 [TaxId: 10747]

Probab=81.47  E-value=2.1  Score=32.46  Aligned_cols=82  Identities=20%  Similarity=0.215  Sum_probs=57.1

Q ss_pred             CcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 026522           74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD  153 (237)
Q Consensus        74 A~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~  153 (237)
                      .|+|++....+|+.|+++|||==+|--.+.+   .....-++.|++.|+--..|-+.+..         --.+|.+-.+.
T Consensus        12 ~~qg~~d~~~~k~~G~~f~iiKateG~~y~D---~~~~~~~~~a~~~G~yh~~~~~~~~~---------~a~~eA~~f~~   79 (189)
T d2j8ga2          12 SHNGYDITGILEQMGTTNTIIKISESTTYLN---PCLSAQVEQSNPIGFYHFARFGGDVA---------EAEREAQFFLD   79 (189)
T ss_dssp             GGGCSCCHHHHHHHTCCEEEEEEEETTTEEC---TTHHHHHHTSEEEEEEEECCCTTCHH---------HHHHHHHHHHH
T ss_pred             CCCCccCHHHHHHCCCcEEEEEEecCCCccC---HHHHHHHHHHHHcCCeeEeecccccc---------cHHHHHHHHHH
Confidence            4899999999999999999998888765543   34556678888888854444554322         23456666666


Q ss_pred             ccCC-CCCeEEEEcc
Q 026522          154 RVSS-WSNIVLAYEP  167 (237)
Q Consensus       154 ~i~~-~~~iiIAYEP  167 (237)
                      .+.. ...+++-+|.
T Consensus        80 ~v~~~~~~~~lD~E~   94 (189)
T d2j8ga2          80 NVPMQVKYLVLDYQD   94 (189)
T ss_dssp             TCCSCCSEEEEECCS
T ss_pred             hccccCCCEEEEEec
Confidence            6642 3356788885