Citrus Sinensis ID: 026533

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEEEEEcccccEEEEEcccccEEEccccccccccccEEEcccccccccccEEccEEEEcEEEEEEccccccccEEccccccccccEEEEEEcccccccccEEccccEEEccEEEEEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEEEEcccccccEEEEcEEEcccccccccccccccccccccccccEEEccEEEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEEEEEcccccEEEEEEccccEEEcccccccccccccccHHHcccccccEEEccEEEEEEEEEEEcccccccccEEEEccccccccEEEEEEcccHcccccccccEEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccEEHHHHccccccEEEccEEEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
mentsslqhgwEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRlkrewgfdefipikafndasngflledtCVFGAEVFVskerstgkgeclsmikdapsikhvWRIENFSKLrseccdsqvfssgdqkwqiqlypkgrrhgtgTHLAVYLALadsttltpgskiyAEFTLRLLDQAQARHIAGkadfwfsasnpesgwaRYVSFTyfnkpgngclvkdVCLVEAEVTVHGISNAL
Flexible Loop (DISEMBL)
mentsslqhgwEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVskerstgkgeclsmikdapsikhVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Low Complexity Region (SEG)
MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Disordered region (IsUnstruct)
********HGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI****
Disordered Region (DISOPRED)
****SSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Disordered Region (DISEMBL)
********HGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Disordered Region (DISPRO)
*****SLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q9FPT1	1116	Ubiquitin carboxyl-termin	no	no	0.565	0.120	0.340	3e-16
Q84WU2	1115	Ubiquitin carboxyl-termin	no	no	0.565	0.120	0.333	9e-16
Q8RY18	1055	MATH domain-containing pr	no	no	0.510	0.114	0.282	1e-05

>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 4/138 (2%)

Query: 97  KDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALAD 156
           +D P++K  W I NFS+  +    S VF  G  KW+I ++PKG       HL++YL ++D
Sbjct: 50  EDPPTLKFTWTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKG---NNVDHLSMYLDVSD 106

Query: 157 STTLTPGSKIYAEFTLRLLDQAQARHIAGK-ADFWFSASNPESGWARYVSFTYFNKPGNG 215
           + +L  G   YA+F+L +++Q   R+   K     F+A   + G+  ++  +    P  G
Sbjct: 107 AASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRG 166

Query: 216 CLVKDVCLVEAEVTVHGI 233
            LV D  LVEAEV V  +
Sbjct: 167 YLVNDTVLVEAEVAVRKV 184

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 4/138 (2%)

Query: 97  KDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALAD 156
           +D PS+K  W I  F++L +    S VF  G  KW+I ++PKG       HL++YL +AD
Sbjct: 49  EDPPSLKFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKG---NNVDHLSMYLDVAD 105

Query: 157 STTLTPGSKIYAEFTLRLLDQAQARH-IAGKADFWFSASNPESGWARYVSFTYFNKPGNG 215
           +  L  G   Y++F+L +++Q   R+ I  +    F+A   + G+  ++  +   +P  G
Sbjct: 106 AANLPYGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRG 165

Query: 216 CLVKDVCLVEAEVTVHGI 233
            LV D  L+EAEV V  +
Sbjct: 166 YLVNDTVLIEAEVAVRKV 183

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 10/131 (7%)

Query: 103 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTP 162
           K+ W IE FS +        VF  G  KW I +YP+G       HL+++L +A    L P
Sbjct: 70  KNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQG--CDVCNHLSLFLCVAHHEKLLP 127

Query: 163 GSKIYAEFTLRL--LDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKD 220
           G   +A+FT+ +   D  +++H      FW      + GW +++      +   G +   
Sbjct: 128 GWSHFAQFTIAVSNKDPKKSKHSDTLHRFWKKEH--DWGWKKFIELPKLKE---GFIDDS 182

Query: 221 VCL-VEAEVTV 230
            CL ++A+V V
Sbjct: 183 GCLTIKAQVQV 193

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
21537273	309	unknown [Arabidopsis thaliana]	0.987	0.757	0.637	3e-89
297830352	309	hypothetical protein ARALYDRAFT_479214 [	0.987	0.757	0.637	3e-89
18401489	309	TRAF-like family protein [Arabidopsis th	0.949	0.728	0.653	7e-88
11994555	304	unnamed protein product [Arabidopsis tha	0.949	0.740	0.653	7e-88
255556544	455	nucleic acid binding protein, putative [	0.987	0.514	0.582	7e-77
357479139	311	Ubiquitin carboxyl-terminal hydrolase [M	0.966	0.736	0.565	1e-75
449441502	316	PREDICTED: BTB/POZ and MATH domain-conta	1.0	0.75	0.542	5e-73
449522688	316	PREDICTED: BTB/POZ and MATH domain-conta	1.0	0.75	0.546	6e-73
356519881	310	PREDICTED: uncharacterized protein LOC10	0.966	0.738	0.548	8e-73
255636923	276	unknown [Glycine max]	0.827	0.710	0.568	5e-65

>gi|21537273|gb|AAM61614.1| unknown [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 151/237 (63%), Positives = 189/237 (79%), Gaps = 3/237 (1%)

Query: 1   MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
           + ++SSL  GWEVYAVFRL+LLDQNK N+LILQ   G ERRFH +KREWGFD+FIP   F
Sbjct: 76  LADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKFIPTGTF 132

Query: 61  NDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCD 120
           +D+SNG+L+EDTC+FGA+VFVSKER +G+GECLSMIKDA S KHVW+IENFSKL  E  D
Sbjct: 133 SDSSNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSKLDKESYD 192

Query: 121 SQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQA 180
           S  F +GD+KW+I+ YP G + GTGTHL++YL L D  T++ G+KI+ EFT+R+ DQ Q 
Sbjct: 193 SNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIFDQLQG 252

Query: 181 RHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL 237
           RHIAGK   WFS S+ E GW +YVS  YF +P +G L+KDVCLVEA+V VHGI++A+
Sbjct: 253 RHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830352|ref|XP_002883058.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata] gi|297328898|gb|EFH59317.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 151/237 (63%), Positives = 189/237 (79%), Gaps = 3/237 (1%)

Query: 1   MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
           + ++SSL  GWEVYAVFRL+LLDQNK N+LILQ   G ERRFH +KREWGFD+FIP   F
Sbjct: 76  LADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHAVKREWGFDKFIPTGTF 132

Query: 61  NDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCD 120
           +DASNG+L+EDTC+FGA+VFVSKER +G+GECLSMIKDA S KHVW+IENFSKL  E  D
Sbjct: 133 SDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSKLDKESYD 192

Query: 121 SQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQA 180
           S  F +GD+KW+++ YP G + GTGTHL++YL L D  T++ G+KI+ EFT+R+ DQ Q 
Sbjct: 193 SNAFFAGDRKWKVRFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIFDQLQG 252

Query: 181 RHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL 237
           RHIAGK   WFS S+ E GW +YVS  YF +P +G L+KDVCLVEA+V VHGI++A+
Sbjct: 253 RHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401489|ref|NP_566576.1| TRAF-like family protein [Arabidopsis thaliana] gi|332642426|gb|AEE75947.1| TRAF-like family protein [Arabidopsis thaliana]

 Score =  329 bits (843), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 149/228 (65%), Positives = 183/228 (80%), Gaps = 3/228 (1%)

Query: 10  GWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLL 69
           GWEVYAVFRL+LLDQNK N+LILQ   G ERRFH +KREWGFD+FIP   F+DASNG+L+
Sbjct: 85  GWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKFIPTGTFSDASNGYLM 141

Query: 70  EDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQ 129
           EDTC+FGA+VFVSKER +G+GECLSMIKDA S KHVW+IENFSKL  E  DS  F +GD+
Sbjct: 142 EDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSKLDKESYDSNAFFAGDR 201

Query: 130 KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADF 189
           KW+I+ YP G + GTGTHL++YL L D  T++ G+KI+ EFT+R+ DQ Q RHIAGK   
Sbjct: 202 KWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTK 261

Query: 190 WFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL 237
           WFS S+ E GW +YVS  YF +P +G L+KDVCLVEA+V VHGI++A+
Sbjct: 262 WFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994555|dbj|BAB02742.1| unnamed protein product [Arabidopsis thaliana]

 Score =  329 bits (843), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 149/228 (65%), Positives = 183/228 (80%), Gaps = 3/228 (1%)

Query: 10  GWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLL 69
           GWEVYAVFRL+LLDQNK N+LILQ   G ERRFH +KREWGFD+FIP   F+DASNG+L+
Sbjct: 80  GWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKFIPTGTFSDASNGYLM 136

Query: 70  EDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQ 129
           EDTC+FGA+VFVSKER +G+GECLSMIKDA S KHVW+IENFSKL  E  DS  F +GD+
Sbjct: 137 EDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSKLDKESYDSNAFFAGDR 196

Query: 130 KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADF 189
           KW+I+ YP G + GTGTHL++YL L D  T++ G+KI+ EFT+R+ DQ Q RHIAGK   
Sbjct: 197 KWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTK 256

Query: 190 WFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL 237
           WFS S+ E GW +YVS  YF +P +G L+KDVCLVEA+V VHGI++A+
Sbjct: 257 WFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCVHGITSAI 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556544|ref|XP_002519306.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541621|gb|EEF43170.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 138/237 (58%), Positives = 176/237 (74%), Gaps = 3/237 (1%)

Query: 1   MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
           M ++S+LQ GWEV+ VFRLFLLDQ + N+LIL    G E RFH  + EWGFD+ IP+   
Sbjct: 222 MADSSNLQLGWEVHVVFRLFLLDQIRDNYLILP---GKECRFHGFRLEWGFDQLIPLATL 278

Query: 61  NDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCD 120
            D  NG+L+EDTCVFGAEVFV KE  TGKGECLSMIK + + K++WR ENFSKL +EC D
Sbjct: 279 KDTKNGYLVEDTCVFGAEVFVRKESCTGKGECLSMIKSSSTSKNLWRFENFSKLDAECND 338

Query: 121 SQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQA 180
           S+ F +GDQ+W+IQLYPKG+  G+GTHL+++LALAD T +TPG KI A+FTLR+LDQ++ 
Sbjct: 339 SKTFVAGDQRWKIQLYPKGKGLGSGTHLSLFLALADLTAITPGFKILADFTLRILDQSRG 398

Query: 181 RHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL 237
            H+ GKA+FWFSAS+   GW+R+          N  L KD CL EAE+TV GI++ L
Sbjct: 399 SHLFGKANFWFSASSSVCGWSRFYPLDQLYASSNAYLFKDTCLGEAEITVLGITDEL 455

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479139|ref|XP_003609855.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355510910|gb|AES92052.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 134/237 (56%), Positives = 176/237 (74%)

Query: 1   MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
           +E +SSL  GWE+Y  F+LF+ DQN  N+L+LQD +  E+RFHR+K EWGFD+FIP+K F
Sbjct: 74  LEESSSLHPGWEIYVNFKLFVYDQNNDNYLVLQDDVKKEKRFHRMKVEWGFDQFIPLKDF 133

Query: 61  NDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCD 120
           N  S G+LL+D C FGAEVFV +E  TGKGE L M+KDA   KHVW I++FSKL SECCD
Sbjct: 134 NIGSKGYLLDDICAFGAEVFVCRENYTGKGESLIMMKDALPYKHVWEIKDFSKLDSECCD 193

Query: 121 SQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQA 180
           S+ F+ G+ KWQI+LYPKG+    G +LA+YL LA+ TT+ PGSKIYA+  LR+LDQ Q+
Sbjct: 194 SKPFNVGNYKWQIKLYPKGKATDLGRYLALYLTLANPTTIPPGSKIYAQTILRILDQKQS 253

Query: 181 RHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL 237
           +H   KA++WFSAS+ E G +R++  + F     G LVKD+C V+ EVTV G+ +AL
Sbjct: 254 KHQFWKANYWFSASSHEHGTSRFILCSNFTSQYLGYLVKDICFVDVEVTVLGVVDAL 310

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441502|ref|XP_004138521.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 129/238 (54%), Positives = 174/238 (73%), Gaps = 1/238 (0%)

Query: 1   MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
           +  T SLQ  WEV+ V+RLFLLDQNK N+L ++D     RRF  +K++WGFD++I +K F
Sbjct: 78  IAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQWGFDKYISLKEF 137

Query: 61  NDASNGFLLEDTCVFGAEVFVSKER-STGKGECLSMIKDAPSIKHVWRIENFSKLRSECC 119
            ++SNG+L++D CVFGAEVFV KE    GKGECLSMIK   + KHVW+I+NFSKL +E  
Sbjct: 138 KESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMIKSPVTYKHVWKIDNFSKLDAESY 197

Query: 120 DSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQ 179
           +S++F++GD+KW+I++YPKG   G G+HL+ YL LAD   L P +KIYAE TLRL DQ  
Sbjct: 198 ESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPATKIYAEVTLRLQDQIY 257

Query: 180 ARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL 237
           ++H +GK  +WFSASNPE G  R++    F +P  G LVKD  +VEAEV++ G++NA 
Sbjct: 258 SKHHSGKVSYWFSASNPEVGGPRFILLDNFKQPNIGFLVKDAFIVEAEVSIIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522688|ref|XP_004168358.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/238 (54%), Positives = 173/238 (72%), Gaps = 1/238 (0%)

Query: 1   MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
           +  T SLQ  WEV+ V+RLFLLDQNK N+L ++D     RRF  +K++WGFD++I +K F
Sbjct: 78  IAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQWGFDKYISLKEF 137

Query: 61  NDASNGFLLEDTCVFGAEVFVSKER-STGKGECLSMIKDAPSIKHVWRIENFSKLRSECC 119
            ++SNG+L++D CVFGAEVFV KE    GKGECLSMIK   + KHVW+I+NFSKL +E  
Sbjct: 138 KESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMIKSPVTYKHVWKIDNFSKLDAESY 197

Query: 120 DSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQ 179
           +S++F++GD+KW+I++YPKG   G G+HL+ YL LAD   L P +KIYAE TLRL DQ  
Sbjct: 198 ESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPATKIYAEVTLRLQDQIY 257

Query: 180 ARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL 237
           ++H +GK  +WFSASNPE G  R++    F +P  G LVKD  +VEAEV V G++NA 
Sbjct: 258 SKHHSGKVSYWFSASNPEVGGPRFILLDNFKQPNIGFLVKDAFIVEAEVNVIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519881|ref|XP_003528597.1| PREDICTED: uncharacterized protein LOC100779090 [Glycine max]

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 130/237 (54%), Positives = 175/237 (73%)

Query: 1   MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
           +++TSSL HGWE+Y  FR FL DQ   N+L+  D +  ERRFH++K EWG D+FIP++ F
Sbjct: 73  LDDTSSLHHGWEIYVNFRFFLHDQTNDNYLVGPDTVRNERRFHKMKAEWGIDQFIPLRDF 132

Query: 61  NDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCD 120
           N AS G+L++DTC FGAEVFV KERSTGKGECL M+K+A   KH++  +N SKL  EC D
Sbjct: 133 NLASKGYLVDDTCAFGAEVFVCKERSTGKGECLVMMKEAILYKHLYEFDNLSKLDLECYD 192

Query: 121 SQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQA 180
           S+ F++G+ KW+I+LYPKG+    G +L++YLALAD + L+P SKIYA+ TLR+LDQ QA
Sbjct: 193 SKPFNAGNFKWKIKLYPKGKGAELGNYLSLYLALADPSALSPCSKIYAQITLRILDQKQA 252

Query: 181 RHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL 237
           +H  GKA++WFSAS+ E+G A ++    F     G +VKD C VEAEV + G+ +AL
Sbjct: 253 KHHFGKANYWFSASSHENGAAIFMPINNFTNQNFGYVVKDSCFVEAEVIILGVVDAL 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636923|gb|ACU18794.1| unknown [Glycine max]

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 116/204 (56%), Positives = 157/204 (76%)

Query: 1   MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
           +++TSSL HGWE+Y  FR FL DQ   N+L+  D +  ERRFH++K EWG D+FIP++ F
Sbjct: 73  LDDTSSLHHGWEIYVNFRFFLHDQTNDNYLVGPDTVRNERRFHKMKAEWGIDQFIPLRDF 132

Query: 61  NDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCD 120
           N AS G+L++DTC FGAEVFV KERSTGKGECL M+K+A   KH++  +N SKL  EC D
Sbjct: 133 NLASKGYLVDDTCAFGAEVFVCKERSTGKGECLVMMKEAILYKHLYEFDNLSKLDLECYD 192

Query: 121 SQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQA 180
           S+ F++G+ KW+I+LYPKG+    G +L++YLALAD + L+P SKIYA+ TLR+LDQ QA
Sbjct: 193 SKPFNAGNFKWKIKLYPKGKGAELGNYLSLYLALADPSALSPCSKIYAQITLRILDQKQA 252

Query: 181 RHIAGKADFWFSASNPESGWARYV 204
           +H  GKA++WFSAS+ E+G A ++
Sbjct: 253 KHHFGKANYWFSASSHENGAAIFM 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2089045	309	AT3G17380 "AT3G17380" [Arabido	0.987	0.757	0.641	4.4e-84
TAIR|locus:2092344	379	AT3G20370 "AT3G20370" [Arabido	0.898	0.562	0.303	3.6e-25
TAIR|locus:2055998	420	AT2G04170 "AT2G04170" [Arabido	0.974	0.55	0.279	1.7e-23
TAIR|locus:2026745	231	AT1G69660 "AT1G69660" [Arabido	0.827	0.848	0.278	2.3e-23
TAIR|locus:2179744	351	AT5G26260 "AT5G26260" [Arabido	0.974	0.658	0.279	3.8e-23
TAIR|locus:2098318	370	AT3G28220 "AT3G28220" [Arabido	0.924	0.591	0.280	6.1e-23
TAIR|locus:2053674	365	AT2G15710 "AT2G15710" [Arabido	0.818	0.531	0.320	1.3e-22
TAIR|locus:2179699	350	AT5G26280 "AT5G26280" [Arabido	0.974	0.66	0.292	1.6e-22
TAIR|locus:2016590	396	ZW9 "AT1G58270" [Arabidopsis t	0.915	0.547	0.290	2.7e-22
TAIR|locus:2092329	363	AT3G20360 "AT3G20360" [Arabido	0.962	0.628	0.273	1.9e-21

TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 152/237 (64%), Positives = 189/237 (79%)

Query:     1 MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
             + ++SSL  GWEVYAVFRL+LLDQNK N+LILQ   G ERRFH +KREWGFD+FIP   F
Sbjct:    76 LADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKFIPTGTF 132

Query:    61 NDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCD 120
             +DASNG+L+EDTC+FGA+VFVSKER +G+GECLSMIKDA S KHVW+IENFSKL  E  D
Sbjct:   133 SDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSKLDKESYD 192

Query:   121 SQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQA 180
             S  F +GD+KW+I+ YP G + GTGTHL++YL L D  T++ G+KI+ EFT+R+ DQ Q 
Sbjct:   193 SNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIFDQLQG 252

Query:   181 RHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL 237
             RHIAGK   WFS S+ E GW +YVS  YF +P +G L+KDVCLVEA+V VHGI++A+
Sbjct:   253 RHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCVHGITSAI 309

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092344 AT3G20370 "AT3G20370" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 67/221 (30%), Positives = 105/221 (47%)

Query:    12 EVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLE- 70
             E+YA  R ++ ++N+  +  +QD      +F   K  WGF + +PI  F D + G+L + 
Sbjct:   152 EIYADLRFYIFNKNERKYFTIQDT--DVWKFSVFKTMWGFSQVLPIDTFKDPTKGYLYDG 209

Query:    71 DTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQK 130
             D C FG +V +       K E  S+ ++  + +  W I  FS L      S+VFS G + 
Sbjct:   210 DHCEFGVDVTMPSLYE--KSELFSVTENFLNPRFTWTIRGFSTLLKNSYLSEVFSIGGRS 267

Query:   131 WQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFW 190
             W IQ+ P G   G G  L++YL L  +    P  KIY    LR L+Q    +I  + D W
Sbjct:   268 WNIQINPSGLGTGEGKALSMYLGLNVNEIFRPYEKIYVRAKLRALNQLNLSNIERELDIW 327

Query:   191 FSASN-PESGWA--RYVSFTYFNKPGNGCLVKDVCLVEAEV 228
             ++     E  W    ++ F Y      G +  DV +V+ E+
Sbjct:   328 YNGPGYGEYSWGFPEFIYFPYLTDSSKGFVKNDVLMVQVEM 368

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2055998 AT2G04170 "AT2G04170" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 66/236 (27%), Positives = 112/236 (47%)

Query:     1 MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
             +E T SL  GWEV    +LF+ +  +  +LI++D  G  +R++  K+EWG+ + IP+  F
Sbjct:   185 IEETESLPKGWEVNVELKLFVYNGKQRKYLIVKD--GIVKRYNDAKKEWGYGKLIPLTTF 242

Query:    61 NDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCD 120
              D + G+L +D   FGAE+F     +    E ++ I + P+    W+I +FS L  +   
Sbjct:   243 LDTNEGYLEQDIASFGAEIFSGT--AVQVQEKVTFISNPPNNVFTWKILHFSNLEDKFYY 300

Query:   121 SQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQA 180
             S  F   D+ W++   PKG   G    + ++L           +  +    LRL +Q  +
Sbjct:   301 SDDFLVEDRYWRLGFNPKGTGDGRSQAIPIFLYAQGHKPNAVATNTWGAVNLRLKNQRSS 360

Query:   181 RHIAGKADFWF-SASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN 235
              H    +  W+ + S+   G    +S   FN    G  V D  + EAE+    ++N
Sbjct:   361 NHAQIYSAAWYPTRSDYGVGVNTIISLAEFNDASKGYSVNDSIIFEAEMVKVSVTN 416

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026745 AT1G69660 "AT1G69660" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 56/201 (27%), Positives = 102/201 (50%)

Query:    12 EVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLED 71
             E +A  R ++ ++ +  +  +QD     +RF+ L+  WG  + +    F +  NGF+ E 
Sbjct:     8 EAFAELRFYVYNKKENKYFTIQDV--EVKRFNALRMVWGLLKVLSYDTFTNPENGFIFEG 65

Query:    72 -TCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQK 130
               C FG +V V+   +    E LS  +     K  W ++NFS+L+ +   S  +  G ++
Sbjct:    66 GECEFGVDVLVAPPLTNW--EILSFDEKLSPPKFSWNLKNFSELKEDVYTSNKYPMGGKE 123

Query:   131 WQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFW 190
             W ++LYPKG     G +L++Y+ LADS TL    K + +  +R+L+   + H+  ++  W
Sbjct:   124 WVLKLYPKGNSRADGKYLSLYVHLADSETLKSDEKNFKQGHVRVLNPLGSNHVEVQSSCW 183

Query:   191 FSASNPESGWARYVSFTYFNK 211
             +  S+   GW  ++S     K
Sbjct:   184 YKESSRGWGWDHFLSIANLRK 204

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179744 AT5G26260 "AT5G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 66/236 (27%), Positives = 111/236 (47%)

Query:     1 MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
             +E T +L  GWEV    +LF+ ++    +L + D  G  +R++  K+EWGF + I +  F
Sbjct:   116 IEETETLPRGWEVNVDLKLFVHNRKLKKYLSVTD--GTVKRYNDAKKEWGFTQLISLPTF 173

Query:    61 NDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCD 120
              +A+ G+L++DT  FGAE+F+     T K E ++ I + P     W+I  FS L  +   
Sbjct:   174 YNANEGYLVQDTASFGAEIFIVNP--TEKQEKVTFISNPPDNVFTWKILRFSTLEDKFYY 231

Query:   121 SQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQA 180
             S  F  GD+ W++   PKG   G    L ++L           +  +    LRL +Q  +
Sbjct:   232 SDDFLVGDRYWRLGFNPKGSGGGRPHALPIFLYAQGHKANAVVTNTWGAVNLRLKNQRSS 291

Query:   181 RHIAGKADFWFSA-SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN 235
              H    +  W+   S+   G    +  +       G +V D  + EAE+    ++N
Sbjct:   292 NHKQLYSAAWYPIRSDYGVGVNNIILMSELKDASKGYMVNDAIIFEAEMVKVSVTN 347

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2098318 AT3G28220 "AT3G28220" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 64/228 (28%), Positives = 110/228 (48%)

Query:     1 MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
             ++N++ L    EVYA  + F+ ++ +  +L  Q+     +RF   K  WG+    P    
Sbjct:   139 IDNSTLLNSPKEVYAEVKFFIYNRKEDKYLTYQETDA--KRFFLFKPYWGYGNVRPYTDV 196

Query:    61 NDASNGFLLE-DTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECC 119
              + + G+L + D  +FG +VFV++  +  K E  S  K      + W + NFS L  +  
Sbjct:   197 ANPNAGWLFDGDNVLFGVDVFVTEVFN--KWEVFSFTKSLHDRLYKWTLPNFSSLEKQYY 254

Query:   120 DSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQ 179
              S  F  G + W +++YP G   G G  L++Y+   D   + P  KIY +  LR+++Q  
Sbjct:   255 VSDKFVIGGRSWALKVYPSGDGEGQGNSLSLYVVAVD---VKPYDKIYLKAKLRIINQRD 311

Query:   180 ARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAE 227
             ++H+  K + W   +N   G+ ++V F        G LV D   +E E
Sbjct:   312 SKHMEKKVESWSDQAN-SWGFQKFVPFADLKDTSKGLLVNDTLKMEIE 358

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

TAIR|locus:2053674 AT2G15710 "AT2G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 68/212 (32%), Positives = 106/212 (50%)

Query:     2 ENTS-SLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
             +NT  S     EV+A    F+ ++ +  +  +QD     +RF+ L+  WG  + + ++ F
Sbjct:   153 DNTKVSSTSPMEVFAYIIFFVYNKKENKYFTIQDV--EVKRFNALRTVWGLSQVLSLETF 210

Query:    61 NDASNGFLLE-DTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECC 119
             ND  NG+  E + C FG +V V+   +  K E +S  +    +K  W +++FS L+ E  
Sbjct:   211 NDLENGYTFEGEQCEFGVDVMVASPIT--KWEVVSFDEKLDILKFSWSVKDFSVLKEEFY 268

Query:   120 DSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQ 179
              S+ FS G + W +Q+YPKG        L+++L L+ S TLT   KIY    LR+LD   
Sbjct:   269 VSERFSMGGRLWDLQMYPKGDPRRDKKWLSIFLRLSGSETLTVDEKIYVIAHLRVLDPL- 327

Query:   180 ARHIAGKADFWFSASNPESGWARYVSFTYFNK 211
                  G    WF   N   GW  Y+ F  F+K
Sbjct:   328 -----GN---WFRDRN--KGWG-YLEFLSFSK 348

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179699 AT5G26280 "AT5G26280" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 69/236 (29%), Positives = 108/236 (45%)

Query:     1 MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
             +E T+SL  GWEV    +LF+ +     +L + D  G  +R++  K+EWGF + IP   F
Sbjct:   115 IEETNSLPLGWEVNVDLKLFVHNGKLHKYLTVTD--GLVKRYNNAKKEWGFGQLIPRSTF 172

Query:    61 NDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCD 120
              +A+ G+L +DT  FGAE+F+ K     + E ++ I + P+    W+I  FS L  +   
Sbjct:   173 YNANEGYLDQDTGSFGAEIFIVKPAQ--QQEKVTFISNPPNNVFTWKILRFSTLEDKFYY 230

Query:   121 SQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQA 180
             S  F   D+ W++   PKG   G    L ++L           +  +    LRL +Q   
Sbjct:   231 SDDFLVEDRYWRLGFNPKGDGGGRPHALPIFLFAQGHKANAVATNTWGAVNLRLKNQRST 290

Query:   181 RHIAGKADFWFS-ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN 235
              H    +  W+   S    G    +     N    G LV D  + EAE+    I+N
Sbjct:   291 NHRQIYSAAWYPIGSGYGVGVNNIILLADLNDASKGYLVNDAIIFEAEMVKVSITN 346

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2016590 ZW9 "AT1G58270" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 67/231 (29%), Positives = 114/231 (49%)

Query:     1 MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
             ++N+S + +  +VYA         +   + I Q+     +RFH  K++WG  +F+PI  F
Sbjct:   154 VDNSSLITNPKDVYAEITFLAYKSSTDKYQISQETEA--QRFHLFKQQWGLLQFLPIYYF 211

Query:    61 NDASNGFLLE-DTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECC 119
              + + G+  E ++ VFG ++ + K       E  S  ++       WR+  FS    +  
Sbjct:   212 ENPAYGYFFEGESVVFGVDINIVKPFENW--EVFSNEQNIRDPIFEWRLTKFSTRFLDSY 269

Query:   120 DSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQ 179
              S  FSSG + W +++YP G  + TG  L++YL L+D +      K Y E  LR++DQ Q
Sbjct:   270 TSDSFSSGGRNWALKVYPNGVGNATGNSLSLYL-LSDQSN----DKGYVEAKLRVIDQIQ 324

Query:   180 ARHIAGKADFWFSASNPESGWA--RYVSFTYFNKPGNGCLVKDVCLVEAEV 228
             + +   K   W +A+  E+GW   R++SF        G LV D   +E ++
Sbjct:   325 SNNFEKKVAAWPNAT--ENGWGFDRFLSFADIKNTSKGFLVNDTLKLEVQI 373

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2092329 AT3G20360 "AT3G20360" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 66/241 (27%), Positives = 118/241 (48%)

Query:     1 MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 60
             ++N++      EV+   R ++ ++ +  +  +QD      RF  +KR WGF + +P+  F
Sbjct:   124 LDNSTLTSQSEEVHVDLRFYVFNKKETKYFTIQDT--DVWRFSAIKRMWGFSKVLPLITF 181

Query:    61 NDASNGFLLE-DTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECC 119
             N+  NG+L + D C FG +V +       K E  S+ K  PS +  W I+ +S L ++  
Sbjct:   182 NNLKNGYLYDVDHCEFGVDVIIPPFYE--KSEVFSVTKSFPSPRFTWYIQGYSTLPTDYL 239

Query:   120 DSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT--PGSKIYAEFTLRLLDQ 177
              S+ F  G + W ++++  G     G +L++YL L     L   P  K+Y    LR+ +Q
Sbjct:   240 -SEEFIIGGKSWNLRIFKNGFGAFEGKNLSLYLNLGPQELLKAKPYDKVYVRAKLRVPNQ 298

Query:   178 --AQARHIAGKA-DFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGIS 234
               +Q+  +  +  D WFS      G+A ++  +       G LV D+ +V+  V +  IS
Sbjct:   299 FGSQSNLVLERPLDNWFSPQTIGWGYADFMPLSDLRNSSKGFLVNDMLVVQ--VAMEEIS 356

Query:   235 N 235
             +
Sbjct:   357 S 357

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.3__1915__AT3G17380.1 annotation not avaliable (309 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	3e-28
smart00061	95	smart00061, MATH, meprin and TRAF homology	8e-08
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	5e-07
pfam00917	116	pfam00917, MATH, MATH domain	1e-05
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	2e-05

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score =  103 bits (259), Expect = 3e-28
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 4/128 (3%)

Query: 103 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTP 162
           KH W+I NFS+L  E   S  F  G  KW+I++YP G    +G +L++YL L    +   
Sbjct: 2   KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDG-ESGDYLSLYLELDKGESDLE 60

Query: 163 GSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPES-GWARYVSFTYFNKPGNGCLVKDV 221
              + AEFTL+L++Q   + ++      F +      G+ +++S+          LV D 
Sbjct: 61  KWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYY--LVDDS 118

Query: 222 CLVEAEVT 229
             +E EV 
Sbjct: 119 LTIEVEVK 126

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 48.4 bits (116), Expect = 8e-08
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 104 HVWRIENFSKL-RSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTP 162
                +N S+L   E   S      +  W++++Y K         L++YL        + 
Sbjct: 2   LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRKN------GFLSLYLHCEKEECDSR 55

Query: 163 GSKIYAEFTLRLLDQ 177
              I AEFTL+L+ Q
Sbjct: 56  KWSIEAEFTLKLVSQ 70

Length = 95

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 2   ENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFN 61
           +   S    W V A F L L++QN G  L           F      WGF +FI      
Sbjct: 53  DKGESDLEKWSVRAEFTLKLVNQNGGKSLSKS---FTHVFFSEKGSGWGFPKFISWDDLE 109

Query: 62  DASNGFLLEDTCVFGAEV 79
           D  + +L++D+     EV
Sbjct: 110 D--SYYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 108 IENFSKLR--SECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYL-ALADSTTLTPGS 164
           I+NFSK++       S         W++++Y  G        L +YL           G 
Sbjct: 1   IKNFSKIKEGENYYTSPYEERFGIPWRLRIYRNGG------FLGLYLHCEKGEKDELLGW 54

Query: 165 KIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLV 224
            I  EFTL+L+     + +  +            GW +++S+       N  +V D  ++
Sbjct: 55  SIETEFTLKLVSD-NGKSLTKRNKSHVFTKPTGYGWGKFISWDDLE---NDYVVDDTIII 110

Query: 225 EAEVTV 230
           EAEV +
Sbjct: 111 EAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 102 IKHVWRIENFSKLRSECCD---SQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALA 155
             ++W I NFS  R E  +   S  FSSG     KW +++ PKG    +  +L++YL L 
Sbjct: 5   FCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 64

Query: 156 DSTTLTPGSKIYAEFTLRLLDQAQARHIAGKAD-FWFSASNPESGWARYVSFTYFNKPGN 214
                 P S++ A+F   +L+       A ++   +      + G+ +++   +     N
Sbjct: 65  SC----PKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 120

Query: 215 GCLVKDVCLVEAEVTVHG 232
           G L  D   +  EV+V  
Sbjct: 121 GLLPDDKLTLFCEVSVVQ 138

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.97
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.96
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.95
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.94
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.93
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.93
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.92
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.92
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.92
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.89
smart00061	95	MATH meprin and TRAF homology.	99.79
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.77
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.77
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.54
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.51
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.48
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.35
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.04
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.99
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	98.87
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	98.86
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	98.83
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	98.83
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.79
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	98.66
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	98.62
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	98.6
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	98.44
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.35
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	98.24
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	98.22
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	98.0
smart00061	95	MATH meprin and TRAF homology.	97.71
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	97.43
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.91
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	96.75
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	96.38

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.97  E-value=2.6e-29  Score=190.94  Aligned_cols=130  Identities=16%  Similarity=0.309  Sum_probs=110.0

Q ss_pred             CCeEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcC--CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCC
Q 026533          101 SIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRH--GTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQA  178 (237)
Q Consensus       101 ~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~--~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~~  178 (237)
                      .++|+|+|+|||.+ ++.++|+.|.+||++|+|++||+|...  +..++||+||.|.+. .....|++.|+|+|+|+||.
T Consensus         2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~-~~~~~w~i~a~~~~~l~~~~   79 (137)
T cd03772           2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLRIINYK   79 (137)
T ss_pred             CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCc-CCCCCCeEEEEEEEEEEcCC
Confidence            57899999999999 688999999999999999999999654  234899999999763 33458999999999999998


Q ss_pred             CC-ceeeecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEe
Q 026533          179 QA-RHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG  232 (237)
Q Consensus       179 ~~-~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~  232 (237)
                      +. .+......+.|+.....|||++||+|++|+++++|||+||+|+|||+|+|=.
T Consensus        80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~  134 (137)
T cd03772          80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA  134 (137)
T ss_pred             CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence            53 3333445567876667999999999999987779999999999999998854

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.96  E-value=2.5e-28  Score=184.79  Aligned_cols=124  Identities=22%  Similarity=0.435  Sum_probs=106.4

Q ss_pred             eEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCC----CCCCCeEEEEEEEEEEeCC
Q 026533          103 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTT----LTPGSKIYAEFTLRLLDQA  178 (237)
Q Consensus       103 ~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~----~~~~~~~~~~~~l~l~n~~  178 (237)
                      +|+|+|+|||.+ ++.+.|++|.+|||+|+|.+||+|+..  .+++|+||.+.+.+.    ++++|.+.|+|+|+|+||.
T Consensus         2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~   78 (134)
T cd03775           2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG   78 (134)
T ss_pred             cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence            699999999997 578999999999999999999999865  689999999976443    2568999999999999997


Q ss_pred             CCce-eeecceeecCCCCccccccceeeccccCCC----CCceeeCCEEEEEEEEE
Q 026533          179 QARH-IAGKADFWFSASNPESGWARYVSFTYFNKP----GNGCLVKDVCLVEAEVT  229 (237)
Q Consensus       179 ~~~~-~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~----~~gfl~~D~l~ie~~v~  229 (237)
                      ++.. ......+.|+....+|||.+||++++|++|    .+|||+||+|+|+|.|.
T Consensus        79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            6442 334556899877789999999999999954    57999999999999873

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.95  E-value=1.3e-27  Score=182.04  Aligned_cols=128  Identities=27%  Similarity=0.484  Sum_probs=107.4

Q ss_pred             CCCeEEEEEccccccC---CceeecccEEeCCe---EEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEE
Q 026533          100 PSIKHVWRIENFSKLR---SECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLR  173 (237)
Q Consensus       100 ~~~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~  173 (237)
                      ...+|+|+|+|||.++   ++.+.|++|.+||+   +|+|++||+|...+..+|+||||++.+.    ..+++.|+|+|+
T Consensus         3 ~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~----~~~~v~a~f~~~   78 (139)
T cd03774           3 VKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFS   78 (139)
T ss_pred             eEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccC----CCCcEEEEEEEE
Confidence            3468999999999874   67899999999995   9999999999876567899999999753    245799999999


Q ss_pred             EEeCCCCcee--eecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEe
Q 026533          174 LLDQAQARHI--AGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG  232 (237)
Q Consensus       174 l~n~~~~~~~--~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~  232 (237)
                      |+||.+....  .....+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus        79 l~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~  138 (139)
T cd03774          79 ILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  138 (139)
T ss_pred             EEecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence            9999876542  2223466764 47899999999999987778999999999999999985

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.94  E-value=1.3e-26  Score=174.88  Aligned_cols=124  Identities=23%  Similarity=0.435  Sum_probs=104.0

Q ss_pred             CCCCeEEEEEccccccC--CceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEe
Q 026533           99 APSIKHVWRIENFSKLR--SECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLD  176 (237)
Q Consensus        99 ~~~~~~~w~I~nfs~l~--~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n  176 (237)
                      ++.++++|+|.|||.++  ++.++|++|.+||++|+|++||+|...+.++|||+||++.++    ..+.+.++|+|+|+|
T Consensus         2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~lln   77 (132)
T cd03773           2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVH   77 (132)
T ss_pred             CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEc
Confidence            34678999999999985  678999999999999999999999887667899999998763    246788899999999


Q ss_pred             CC-CCceeeecceeecCCCCccccccceeeccccCCCCCceeeC--CEEEEEEEEE
Q 026533          177 QA-QARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVK--DVCLVEAEVT  229 (237)
Q Consensus       177 ~~-~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~--D~l~ie~~v~  229 (237)
                      |. ...+......+.|.. ..+|||.+||++++|++  +|||+|  |+|+|+|.|+
T Consensus        78 q~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          78 QANPTKNIKREFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             CCCCccceEEeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence            95 333444445567865 46799999999999986  799999  9999999985

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.93  E-value=8e-26  Score=174.13  Aligned_cols=126  Identities=24%  Similarity=0.407  Sum_probs=102.6

Q ss_pred             CeEEEEEccccccC-------CceeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEEEEEE
Q 026533          102 IKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAEFT  171 (237)
Q Consensus       102 ~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~~~~~  171 (237)
                      ++|+|+|.+||.++       ++.++|+.|.+|  ||+|+|++||+|...+.++||||||++.+++.. ...|++.++|+
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~   80 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT   80 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence            57999999999974       358999999999  999999999999876667899999999875442 35799999999


Q ss_pred             EEEEeCCCC---ceeeec-----ceeecC-----CCCccccccceeeccccCCCCCceeeCCEEEEEEEEE
Q 026533          172 LRLLDQAQA---RHIAGK-----ADFWFS-----ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  229 (237)
Q Consensus       172 l~l~n~~~~---~~~~~~-----~~~~F~-----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~  229 (237)
                      |+|+||.++   .+....     ....|.     ....+|||.+||++++|++  .|||+||+|+|+|+|.
T Consensus        81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~  149 (149)
T cd00270          81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD  149 (149)
T ss_pred             EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence            999999873   222111     123454     1357899999999999986  5899999999999983

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=1.8e-25  Score=170.89  Aligned_cols=127  Identities=24%  Similarity=0.372  Sum_probs=104.5

Q ss_pred             CeEEEEEccccccC-----Cc--eeecccE--EeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEEEEEE
Q 026533          102 IKHVWRIENFSKLR-----SE--CCDSQVF--SSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYAEFT  171 (237)
Q Consensus       102 ~~~~w~I~nfs~l~-----~~--~~~S~~f--~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~~~~~  171 (237)
                      |.+.|+|.+||.++     +.  .+.|++|  .++||+|+|++||||.+.+.++|+|+||++..++..+ ..|++.++++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t   80 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT   80 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence            57999999999985     44  7999999  8999999999999999887889999999998754332 4799999999


Q ss_pred             EEEEeCCCCc-e-e-e-e--cceeecCCC----CccccccceeeccccCCCCCceeeCCEEEEEEEE
Q 026533          172 LRLLDQAQAR-H-I-A-G--KADFWFSAS----NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEV  228 (237)
Q Consensus       172 l~l~n~~~~~-~-~-~-~--~~~~~F~~~----~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v  228 (237)
                      |.|+||.+.. + . . .  .....|.+.    +.+||+++||++++|+.++.+||.||+++|+|.|
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            9999997542 2 1 1 1  113568654    5579999999999998644699999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.93  E-value=1.4e-25  Score=172.46  Aligned_cols=126  Identities=22%  Similarity=0.292  Sum_probs=101.3

Q ss_pred             CeEEEEEccccccC-----Cc--eeecccEEe--CCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCC-CCCCCeEEEEEE
Q 026533          102 IKHVWRIENFSKLR-----SE--CCDSQVFSS--GDQKWQIQLYPKGRRHGTGTHLAVYLALADSTT-LTPGSKIYAEFT  171 (237)
Q Consensus       102 ~~~~w~I~nfs~l~-----~~--~~~S~~f~~--gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~-~~~~~~~~~~~~  171 (237)
                      +.|+|+|.+||.++     ++  .+.|+.|.+  |||+|+|++||+|..++..+|||+||++.+++. ...+|++.++++
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~   80 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT   80 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence            57999999999764     34  488999985  799999999999998777789999999987543 234799999999


Q ss_pred             EEEEeCCCCc-eee-----ecceeecCC-----CCccccccceeeccccCCCCCceeeCCEEEEEEEEE
Q 026533          172 LRLLDQAQAR-HIA-----GKADFWFSA-----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  229 (237)
Q Consensus       172 l~l~n~~~~~-~~~-----~~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~  229 (237)
                      |+|+||.+.. +..     ......|.+     .+.+|||.+||++++|+.  .+||+||+|+|+|+|.
T Consensus        81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~  147 (147)
T cd03776          81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence            9999998632 211     112245653     346799999999999986  6899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=8.4e-25  Score=166.59  Aligned_cols=127  Identities=21%  Similarity=0.315  Sum_probs=102.2

Q ss_pred             CeEEEEEccccccC-----C--ceeecccEEe--CCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEEEEEE
Q 026533          102 IKHVWRIENFSKLR-----S--ECCDSQVFSS--GDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAEFT  171 (237)
Q Consensus       102 ~~~~w~I~nfs~l~-----~--~~~~S~~f~~--gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~~~~~  171 (237)
                      |.+.|+|+||+++.     +  ..++||.|..  .||+|+|++||||.+.+.++|+|+||++..++.. -..|++.++++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t   80 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT   80 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence            57999999999763     2  3699999975  5999999999999998778899999999875321 23799999999


Q ss_pred             EEEEeCCCCcee--eecc---eeecC----CCCccccccceeeccccCCCCCceeeCCEEEEEEEE
Q 026533          172 LRLLDQAQARHI--AGKA---DFWFS----ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEV  228 (237)
Q Consensus       172 l~l~n~~~~~~~--~~~~---~~~F~----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v  228 (237)
                      |.|+||.+..+.  ....   ...|+    ..+.+||+++||++++|+.+..+||+||+++|+|+|
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V  146 (147)
T cd03779          81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV  146 (147)
T ss_pred             EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence            999999865442  1111   25686    345579999999999998633499999999999998

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.92  E-value=7.4e-25  Score=169.46  Aligned_cols=126  Identities=23%  Similarity=0.335  Sum_probs=102.9

Q ss_pred             CeEEEEEccccccC-------CceeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEEEEEE
Q 026533          102 IKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYAEFT  171 (237)
Q Consensus       102 ~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~~~~~  171 (237)
                      |.|.|+|.+||.++       ++.+.|+.|.+|  ||+|+|++||+|..++.++|+|+||++.+++..+ ..|++.++++
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~   80 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT   80 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence            57999999999875       257999999999  9999999999999887788999999998855433 4899999999


Q ss_pred             EEEEeCCCC--c---eeee-----cceeecCC--------CCccccccceeeccccCCCCCceeeCCEEEEEEEEE
Q 026533          172 LRLLDQAQA--R---HIAG-----KADFWFSA--------SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  229 (237)
Q Consensus       172 l~l~n~~~~--~---~~~~-----~~~~~F~~--------~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~  229 (237)
                      |+|+||.+.  .   +...     .....|++        .+.+||+.+||++++|+.  ++||+||+|+|+|+|.
T Consensus        81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~  154 (154)
T cd03781          81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence            999999864  1   1111     11234542        345799999999999986  7899999999999983

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.92  E-value=1.4e-24  Score=171.75  Aligned_cols=129  Identities=22%  Similarity=0.364  Sum_probs=105.4

Q ss_pred             CCCCeEEEEEccccccC-----Cc--eeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEEE
Q 026533           99 APSIKHVWRIENFSKLR-----SE--CCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYA  168 (237)
Q Consensus        99 ~~~~~~~w~I~nfs~l~-----~~--~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~~  168 (237)
                      ..+|.|.|+|.+||..+     ++  .++|++|.+|  ||+|+|++||+|.+.+.++|+|+||++..++.. -..|++.+
T Consensus        36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~  115 (186)
T cd03777          36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  115 (186)
T ss_pred             ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence            44799999999999874     34  7999999999  999999999999988778999999999875432 23799999


Q ss_pred             EEEEEEEeCCCC-cee-----eecceeecCC-C---CccccccceeeccccCCCCCceeeCCEEEEEEEEE
Q 026533          169 EFTLRLLDQAQA-RHI-----AGKADFWFSA-S---NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  229 (237)
Q Consensus       169 ~~~l~l~n~~~~-~~~-----~~~~~~~F~~-~---~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~  229 (237)
                      +++|.|+||.+. .+.     .......|.+ .   +.+||+++||++++|+.  ++||+||+++|+|.|.
T Consensus       116 ~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~  184 (186)
T cd03777         116 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD  184 (186)
T ss_pred             EEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEe
Confidence            999999999752 111     1112355762 2   45799999999999986  7899999999999986

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.92  E-value=2.1e-24  Score=166.24  Aligned_cols=129  Identities=22%  Similarity=0.338  Sum_probs=107.9

Q ss_pred             CCCCeEEEEEccccccC-----C--ceeecccEEe--CCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 026533           99 APSIKHVWRIENFSKLR-----S--ECCDSQVFSS--GDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYA  168 (237)
Q Consensus        99 ~~~~~~~w~I~nfs~l~-----~--~~~~S~~f~~--gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~~  168 (237)
                      ...|.++|+|.||+++.     +  ..++||.|..  +||+|+|++||+|++.+++.|||+|+++.+++.++ ..|++..
T Consensus        16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~   95 (164)
T cd03778          16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (164)
T ss_pred             ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence            45799999999999975     2  3789999964  79999999999999988889999999999988876 7999999


Q ss_pred             EEEEEEEeCCCCceeeecce-----eecCC----CCccccccceeeccccCCCCCceeeCCEEEEEEEE
Q 026533          169 EFTLRLLDQAQARHIAGKAD-----FWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEV  228 (237)
Q Consensus       169 ~~~l~l~n~~~~~~~~~~~~-----~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v  228 (237)
                      +++|.|+||.++.|......     ..|.+    .+.+|||+.|+++++|..+ ++||+||+|.|+|.|
T Consensus        96 ~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778          96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             EEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            99999999987766532211     13532    4567999999999999864 599999999999987

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.92  E-value=2.5e-24  Score=166.91  Aligned_cols=126  Identities=22%  Similarity=0.388  Sum_probs=99.4

Q ss_pred             CCeEEEEEccccccC-----CceeecccE-EeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCe-EEEEEEE
Q 026533          101 SIKHVWRIENFSKLR-----SECCDSQVF-SSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSK-IYAEFTL  172 (237)
Q Consensus       101 ~~~~~w~I~nfs~l~-----~~~~~S~~f-~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~-~~~~~~l  172 (237)
                      ++.|+|+|.|||.++     ++.++|++| .+|||+|+|++||+|... .++||||||++.+++.. ..+|+ +.++++|
T Consensus         1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~   79 (167)
T cd03771           1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATM   79 (167)
T ss_pred             CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEE
Confidence            468999999999985     458999998 999999999999999987 78999999999875442 35799 5899999


Q ss_pred             EEEeCCCC----cee----eecc--------eeecCC-----------------CCccccccceeeccccCCCCCceeeC
Q 026533          173 RLLDQAQA----RHI----AGKA--------DFWFSA-----------------SNPESGWARYVSFTYFNKPGNGCLVK  219 (237)
Q Consensus       173 ~l~n~~~~----~~~----~~~~--------~~~F~~-----------------~~~~~G~~~fi~~~~L~~~~~gfl~~  219 (237)
                      +|+||...    .+.    +...        ...|.+                 .+.+|||++||++++|+.  .+||+|
T Consensus        80 ~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~  157 (167)
T cd03771          80 TLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKG  157 (167)
T ss_pred             EEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcC
Confidence            99999731    111    1000        011221                 235899999999999997  679999


Q ss_pred             CEEEEEEEEE
Q 026533          220 DVCLVEAEVT  229 (237)
Q Consensus       220 D~l~ie~~v~  229 (237)
                      |+|.|+++++
T Consensus       158 dtl~i~~~~~  167 (167)
T cd03771         158 DDLIILLDFE  167 (167)
T ss_pred             CEEEEEEEeC
Confidence            9999999873

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.92  E-value=8.9e-24  Score=156.74  Aligned_cols=125  Identities=31%  Similarity=0.548  Sum_probs=104.2

Q ss_pred             CeEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCc
Q 026533          102 IKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQAR  181 (237)
Q Consensus       102 ~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~~~~~  181 (237)
                      ++|+|+|.+|+...++.++|+.|.++|+.|+|++||+|... ..++||+||+|.+.......|++.++++|+|+++++.+
T Consensus         1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   79 (126)
T cd00121           1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK   79 (126)
T ss_pred             CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence            37999999999966789999999999999999999999765 56899999999875544467999999999999998555


Q ss_pred             eeeecceeecC-CCCccccccceeeccccCCCCCceeeCCEEEEEEEEE
Q 026533          182 HIAGKADFWFS-ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  229 (237)
Q Consensus       182 ~~~~~~~~~F~-~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~  229 (237)
                      +........|. ....+|||.+||++++|++  ..+++||+|+|+|+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~  126 (126)
T cd00121          80 SLSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK  126 (126)
T ss_pred             cceEeccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence            44444444553 4568999999999999997  3349999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.89  E-value=1.1e-22  Score=150.17  Aligned_cols=116  Identities=35%  Similarity=0.580  Sum_probs=95.8

Q ss_pred             EccccccC-C-ceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEEEEEEEEEEeCCCCceee
Q 026533          108 IENFSKLR-S-ECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYAEFTLRLLDQAQARHIA  184 (237)
Q Consensus       108 I~nfs~l~-~-~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~~~~~l~l~n~~~~~~~~  184 (237)
                      |+|||+++ + ..+.|+.|.++|++|+|.+||+|+    ++++++||+|..++... ..|++.++++++|+++.++....
T Consensus         1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~   76 (119)
T PF00917_consen    1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK   76 (119)
T ss_dssp             ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred             CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence            78999997 3 344558999999999999999976    57999999999865543 68999999999999998876432


Q ss_pred             ecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEE
Q 026533          185 GKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTV  230 (237)
Q Consensus       185 ~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v  230 (237)
                      ....+.|+.. .+|||.+||++++|.++  .|++||+|+|+|+|+|
T Consensus        77 ~~~~~~F~~~-~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   77 RIKSHSFNNP-SSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEECEEECTT-SEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred             eeeeeEEeee-cccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence            2124788754 78999999999999974  3899999999999987

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>smart00061 MATH meprin and TRAF homology

Probab=99.79  E-value=2e-18  Score=122.14  Aligned_cols=93  Identities=24%  Similarity=0.338  Sum_probs=79.9

Q ss_pred             EEEEEccccccC-CceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCce
Q 026533          104 HVWRIENFSKLR-SECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARH  182 (237)
Q Consensus       104 ~~w~I~nfs~l~-~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~  182 (237)
                      ++|+|+||+.+. ++.++|+.|.+||++|+|++||+      ++|||+||.|.+....+..|++.|+++++|+||++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~   75 (95)
T smart00061        2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL   75 (95)
T ss_pred             ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence            579999999985 78899999999999999999998      58999999998765544589999999999999998765


Q ss_pred             eeecceeecCCCCcccccccee
Q 026533          183 IAGKADFWFSASNPESGWARYV  204 (237)
Q Consensus       183 ~~~~~~~~F~~~~~~~G~~~fi  204 (237)
                      . ....+.|.. ..+|||.+||
T Consensus        76 ~-~~~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       76 S-KKDKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             e-eeeeEEEcC-CCccceeeEC
Confidence            3 445678886 6789999886

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.77  E-value=2.5e-18  Score=132.04  Aligned_cols=127  Identities=18%  Similarity=0.343  Sum_probs=98.9

Q ss_pred             CCeEEEEEccccccC-----CceeecccEEe-CCeEEEEEEEeCCCcC-CCCCeEEEEEEecCCCCCC-CCCeE-EEEEE
Q 026533          101 SIKHVWRIENFSKLR-----SECCDSQVFSS-GDQKWQIQLYPKGRRH-GTGTHLAVYLALADSTTLT-PGSKI-YAEFT  171 (237)
Q Consensus       101 ~~~~~w~I~nfs~l~-----~~~~~S~~f~~-gg~~W~l~vyp~G~~~-~~~~~lslyL~~~~~~~~~-~~~~~-~~~~~  171 (237)
                      ++.+.|+|.||+++.     +..++||.|.. .|++.+|++||+|.+. +.+.|+|||+++..++..+ ..|++ .-+++
T Consensus         1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it   80 (167)
T cd03783           1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI   80 (167)
T ss_pred             CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence            357899999999874     45799999976 5999999999999874 5678999999999877643 58995 56899


Q ss_pred             EEEEeCCC----Ccee----eecc---------eeecCC--------------CCccccccceeeccccCCCCCceeeCC
Q 026533          172 LRLLDQAQ----ARHI----AGKA---------DFWFSA--------------SNPESGWARYVSFTYFNKPGNGCLVKD  220 (237)
Q Consensus       172 l~l~n~~~----~~~~----~~~~---------~~~F~~--------------~~~~~G~~~fi~~~~L~~~~~gfl~~D  220 (237)
                      |.|+||+.    +.+.    +...         ...|.+              .+.++||++||+++.|+.  ++||+||
T Consensus        81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdD  158 (167)
T cd03783          81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKND  158 (167)
T ss_pred             EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCC
Confidence            99999964    1111    1111         011332              245899999999999997  8999999


Q ss_pred             EEEEEEEEE
Q 026533          221 VCLVEAEVT  229 (237)
Q Consensus       221 ~l~ie~~v~  229 (237)
                      +|.|.++++
T Consensus       159 tlfI~~~~~  167 (167)
T cd03783         159 DLIIFVDFE  167 (167)
T ss_pred             eEEEEEecC
Confidence            999998863

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.77  E-value=3.7e-18  Score=130.49  Aligned_cols=125  Identities=21%  Similarity=0.269  Sum_probs=99.5

Q ss_pred             CCeEEEEEccccccC-----CceeecccEE-eCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEE-EEEEE
Q 026533          101 SIKHVWRIENFSKLR-----SECCDSQVFS-SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIY-AEFTL  172 (237)
Q Consensus       101 ~~~~~w~I~nfs~l~-----~~~~~S~~f~-~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~-~~~~l  172 (237)
                      ++.+.|+|.||+++.     ...++||+|. ..||+.+|++||||.+.+ ++|||||+++..++..+ ..|++. -+++|
T Consensus         1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~   79 (167)
T cd03782           1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATM   79 (167)
T ss_pred             CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence            357899999999975     4679999994 589999999999999875 68999999999887643 489999 89999


Q ss_pred             EEEeCCC----Cceeee----c-----c-eeec--CCC-----------------CccccccceeeccccCCCCCceeeC
Q 026533          173 RLLDQAQ----ARHIAG----K-----A-DFWF--SAS-----------------NPESGWARYVSFTYFNKPGNGCLVK  219 (237)
Q Consensus       173 ~l~n~~~----~~~~~~----~-----~-~~~F--~~~-----------------~~~~G~~~fi~~~~L~~~~~gfl~~  219 (237)
                      .|+||+.    +.+...    .     . ...|  .+.                 +.++||+.||++++|+.  +.||+|
T Consensus        80 ~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikd  157 (167)
T cd03782          80 MLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKG  157 (167)
T ss_pred             EEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccC
Confidence            9999974    222211    0     0 0124  221                 57899999999999997  789999


Q ss_pred             CEEEEEEEE
Q 026533          220 DVCLVEAEV  228 (237)
Q Consensus       220 D~l~ie~~v  228 (237)
                      |++.|-+++
T Consensus       158 D~ifi~~~~  166 (167)
T cd03782         158 DDVIFLLTM  166 (167)
T ss_pred             CeEEEEEec
Confidence            999998876

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1e-14  Score=132.39  Aligned_cols=131  Identities=20%  Similarity=0.409  Sum_probs=108.4

Q ss_pred             CCCCeEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCC--C-CCCCeEEEEEEEEEE
Q 026533           99 APSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTT--L-TPGSKIYAEFTLRLL  175 (237)
Q Consensus        99 ~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~--~-~~~~~~~~~~~l~l~  175 (237)
                      ....+++|+|+++|.+. +.++||+|.+||+.|+|.++|+|+..   ...|+||.....+.  . ...|.|+|+|.|.+-
T Consensus        36 ~~~~sftW~vk~wsel~-~k~~Sp~F~vg~~twki~lfPqG~nq---~~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is  111 (1089)
T COG5077          36 LLEMSFTWKVKRWSELA-KKVESPPFSVGGHTWKIILFPQGNNQ---CNVSVYLEYEPQELEETGGKYYDCCAQFAFDIS  111 (1089)
T ss_pred             HhhcccceecCChhhhh-hhccCCcccccCeeEEEEEecccCCc---cccEEEEEeccchhhhhcCcchhhhhheeeecC
Confidence            44678999999999997 47899999999999999999999864   23899999875321  1 234899999999998


Q ss_pred             eCCCCce-eeecceeecCCCCccccccceeeccccCCCCCc---eeeCCEEEEEEEEEEEee
Q 026533          176 DQAQARH-IAGKADFWFSASNPESGWARYVSFTYFNKPGNG---CLVKDVCLVEAEVTVHGI  233 (237)
Q Consensus       176 n~~~~~~-~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g---fl~~D~l~ie~~v~v~~~  233 (237)
                      ++..+.. ......++|+....+|||.+|+.+..|..|+.|   |+.+|++.|.|.|+|++.
T Consensus       112 ~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd  173 (1089)
T COG5077         112 NPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD  173 (1089)
T ss_pred             CCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence            8776432 234567899988899999999999999987655   678999999999999986

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.51  E-value=7.8e-14  Score=105.79  Aligned_cols=75  Identities=19%  Similarity=0.358  Sum_probs=63.4

Q ss_pred             CCCCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeec
Q 026533            7 LQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE   84 (237)
Q Consensus         7 ~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~   84 (237)
                      ..++|+++|+|+|.|+|+.++..+..+.   ..|+|.....+|||++||+|++|+++.+|||+||+|+|+|+|.+-.+
T Consensus        61 ~~~~w~i~a~~~~~l~~~~~~~~~~~~~---~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~~  135 (137)
T cd03772          61 DSTSWSCHAQAVLRIINYKDDEPSFSRR---ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADAP  135 (137)
T ss_pred             CCCCCeEEEEEEEEEEcCCCCcccEEEe---eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeCC
Confidence            3458999999999999998654444443   45789877789999999999999988899999999999999987653

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.48  E-value=1e-13  Score=104.74  Aligned_cols=71  Identities=24%  Similarity=0.478  Sum_probs=61.2

Q ss_pred             CCCCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccC----CCCeeecCeEEEEEEEE
Q 026533            7 LQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDA----SNGFLLEDTCVFGAEVF   80 (237)
Q Consensus         7 ~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~----~~gfl~~d~~~~~~~v~   80 (237)
                      ++++|.++|+|+|.|+||.++..+..+.   +.|+|+....+|||.+||++++|++|    .+|||+||+++|+|+|+
T Consensus        60 ~~~~~~v~a~f~~~l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          60 LDEDWSVCAQFALVISNPGDPSIQLSNV---AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             CCCCCeEEEEEEEEEEcCCCCccceEcc---ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            5789999999999999998766554443   67999987789999999999999965    67999999999999873

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.35  E-value=2.3e-12  Score=97.92  Aligned_cols=72  Identities=28%  Similarity=0.465  Sum_probs=60.8

Q ss_pred             CcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeec
Q 026533           10 GWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE   84 (237)
Q Consensus        10 ~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~   84 (237)
                      .+.++|+|+|.|+||++++......+  ..++|.. ..+|||.+||++++|+++.+|||.||+++|+|+|.|+++
T Consensus        68 ~~~v~a~f~~~l~n~~~~~~~~~~~~--~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~~  139 (139)
T cd03774          68 KSEVRAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  139 (139)
T ss_pred             CCcEEEEEEEEEEecCCCeeeeeccc--CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEcC
Confidence            46899999999999987765433332  4578876 579999999999999988899999999999999999853

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.04  E-value=4.6e-10  Score=82.34  Aligned_cols=66  Identities=29%  Similarity=0.539  Sum_probs=55.1

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEE
Q 026533            9 HGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV   81 (237)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v   81 (237)
                      .+|++.|++++.|+|+.++......    ..++|+.. ..||+.+||++++|.++.  ||.||+++|+|+|.|
T Consensus        54 ~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~F~~~-~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   54 LEWSIEAEFRFRLLNQNGKSISKRI----KSHSFNNP-SSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI  119 (119)
T ss_dssp             SSSSEEEEEEEEEE-TTSCEEEEEE----ECEEECTT-SEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred             cceeeeEEEEEEEecCCCCcceeee----eeeEEeee-cccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence            6999999999999999888744221    24788774 899999999999999755  999999999999976

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.99  E-value=4.3e-11  Score=102.15  Aligned_cols=218  Identities=22%  Similarity=0.278  Sum_probs=147.2

Q ss_pred             CcEEEEEEEEEEEeCCCCce-EEEe-cccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeecccC
Q 026533           10 GWEVYAVFRLFLLDQNKGNF-LILQ-DAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERST   87 (237)
Q Consensus        10 ~w~~~a~f~~~l~n~~~~~~-~~~~-~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~~~~   87 (237)
                      +|+++|+++|+++|+...++ +..+ ..  ...+|......||+..++++..+.++..||+.+..+++.+.+.|.+..  
T Consensus        54 ~~~~~~~~~l~v~n~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~--  129 (297)
T KOG1987|consen   54 GWERYAKLRLTVVNQKSEKYLSTVEEGF--SWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAM--  129 (297)
T ss_pred             CcceeEEEEEEEccCCCcceeeeeeeeE--EeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeee--
Confidence            99999999999999999987 6653 21  233444447899999999999999999999999888888888777766  


Q ss_pred             Cccceeee--------eecCCC----CeEEEEEccccccCC----ceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEE
Q 026533           88 GKGECLSM--------IKDAPS----IKHVWRIENFSKLRS----ECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVY  151 (237)
Q Consensus        88 ~~~e~~~~--------~~~~~~----~~~~w~I~nfs~l~~----~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lsly  151 (237)
                      .+.+.+..        +.+...    ..|+|.+.+++..+.    ....+..|..++..|++.++|.+........++.+
T Consensus       130 ~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~  209 (297)
T KOG1987|consen  130 GKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQS  209 (297)
T ss_pred             cccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhccc
Confidence            55554432        333444    889999999998872    36778999999999999999999876555677888


Q ss_pred             EEecCCCCC--CCCCeEEEEEEEEEEeCCCC--cee-eec-ceeecCCCCccccccceeeccccCCCCCceeeCCEEEEE
Q 026533          152 LALADSTTL--TPGSKIYAEFTLRLLDQAQA--RHI-AGK-ADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVE  225 (237)
Q Consensus       152 L~~~~~~~~--~~~~~~~~~~~l~l~n~~~~--~~~-~~~-~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie  225 (237)
                      |...+...+  ...-.+++......+|+...  ++. .+. ...+.......+ ..++.++.++.....+++.++++.++
T Consensus       210 l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~  288 (297)
T KOG1987|consen  210 LQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVE  288 (297)
T ss_pred             HHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhh
Confidence            886652221  11222334444445665442  221 111 111111111122 45566666665555677788888887


Q ss_pred             EEEEEEe
Q 026533          226 AEVTVHG  232 (237)
Q Consensus       226 ~~v~v~~  232 (237)
                      +....+.
T Consensus       289 ~~~~~~~  295 (297)
T KOG1987|consen  289 AESEPLS  295 (297)
T ss_pred             cccCCcC
Confidence            7766554

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=98.87  E-value=4.7e-09  Score=80.56  Aligned_cols=71  Identities=24%  Similarity=0.419  Sum_probs=51.7

Q ss_pred             CCCcEEEEEEEEEEEeCCCC--ceEEEec--ccceeeecc-----cCccccccccceeccccccCCCCeeecCeEEEEEE
Q 026533            8 QHGWEVYAVFRLFLLDQNKG--NFLILQD--AMGAERRFH-----RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAE   78 (237)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~--~~~~~~~--~~~~~~~F~-----~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~   78 (237)
                      +.+|.+.|+|+|.|+||.++  ..+....  +....+.|.     ....+|||.+||++++|++  .|||+||+|+|+|+
T Consensus        70 ~~~w~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~  147 (149)
T cd00270          70 LLEWPFRGKITLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVE  147 (149)
T ss_pred             cccCCccceEEEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEE
Confidence            46799999999999999864  2221111  000124554     1357899999999999985  59999999999998


Q ss_pred             EE
Q 026533           79 VF   80 (237)
Q Consensus        79 v~   80 (237)
                      |.
T Consensus       148 v~  149 (149)
T cd00270         148 VD  149 (149)
T ss_pred             EC
Confidence            73

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=98.86  E-value=4.4e-09  Score=79.03  Aligned_cols=65  Identities=22%  Similarity=0.389  Sum_probs=52.7

Q ss_pred             CcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeec--CeEEEEEEEE
Q 026533           10 GWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLE--DTCVFGAEVF   80 (237)
Q Consensus        10 ~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~--d~~~~~~~v~   80 (237)
                      +|.+.++|+|+|+||.++..+....   ..++|.. ..+|||.+||++++|.+  +|||.|  |+++|++.|+
T Consensus        64 ~~~~~~~~~l~llnq~~~~~~~~~~---~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          64 GEASKYEYRVEMVHQANPTKNIKRE---FASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             CCceeEEEEEEEEcCCCCccceEEe---ccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence            4778999999999996555454444   4678876 46899999999999974  799999  9999998864

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.5e-09  Score=99.44  Aligned_cols=73  Identities=26%  Similarity=0.426  Sum_probs=65.8

Q ss_pred             CcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCC---eeecCeEEEEEEEEEeecc
Q 026533           10 GWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNG---FLLEDTCVFGAEVFVSKER   85 (237)
Q Consensus        10 ~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~g---fl~~d~~~~~~~v~v~~~~   85 (237)
                      .|.|||+|.|.|.|++.+.......   ++|||....++|||++||.|..|..|+.|   |+.+++++|.|.|+|++++
T Consensus        99 ~~~ccaqFaf~Is~p~~pti~~iN~---sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP  174 (1089)
T COG5077          99 YYDCCAQFAFDISNPKYPTIEYINK---SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP  174 (1089)
T ss_pred             chhhhhheeeecCCCCCCchhhhhc---ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence            5999999999999998877665443   78999999999999999999999987776   8999999999999999985

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=98.83  E-value=1.4e-08  Score=74.63  Aligned_cols=66  Identities=32%  Similarity=0.545  Sum_probs=51.9

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEecccceeeecc-cCccccccccceeccccccCCCCeeecCeEEEEEEE
Q 026533            8 QHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFH-RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV   79 (237)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~-~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v   79 (237)
                      +..|.+.|+|+|.|+|++.++.....    ..+.|. ....+|||.+||++++|.++  +++.||+++|+|+|
T Consensus        59 ~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v  125 (126)
T cd00121          59 LEKWSVRAEFTLKLVNQNGGKSLSKS----FTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEV  125 (126)
T ss_pred             CCCCcEEEEEEEEEECCCCCccceEe----ccCCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEE
Confidence            46899999999999999845543322    234453 55789999999999999963  34999999999987

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.79  E-value=9.2e-08  Score=81.62  Aligned_cols=121  Identities=29%  Similarity=0.480  Sum_probs=98.1

Q ss_pred             EEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCce-
Q 026533          104 HVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARH-  182 (237)
Q Consensus       104 ~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~-  182 (237)
                      +.|.+.+++... ..++|..|..+|..|++.+||.|+      ++++|+.+...    ++|.+++.++|.+.|+..... 
T Consensus         6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----~~~~~~~~~~l~v~n~~~~~~~   74 (297)
T KOG1987|consen    6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDS----PGWERYAKLRLTVVNQKSEKYL   74 (297)
T ss_pred             cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccC----CCcceeEEEEEEEccCCCccee
Confidence            338888988876 778999999999999999999864      78999988763    289999999999999988754 


Q ss_pred             eee-cceeecCCC--CccccccceeeccccCCCCCceeeCCEEEEEEEEEEEeeec
Q 026533          183 IAG-KADFWFSAS--NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN  235 (237)
Q Consensus       183 ~~~-~~~~~F~~~--~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~~~  235 (237)
                      ... ....+|...  ...||+...++...+.++..||++++.+++-+.+.|++..+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~  130 (297)
T KOG1987|consen   75 STVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMG  130 (297)
T ss_pred             eeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeec
Confidence            333 344454443  57899999999999999889999998888888887776543

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=98.66  E-value=5.9e-08  Score=74.11  Aligned_cols=69  Identities=20%  Similarity=0.337  Sum_probs=51.5

Q ss_pred             CcEEEEEEEEEEEeCCCCce--EEEecccceeeecc----cCccccccccceeccccccCCCCeeecCeEEEEEEE
Q 026533           10 GWEVYAVFRLFLLDQNKGNF--LILQDAMGAERRFH----RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV   79 (237)
Q Consensus        10 ~w~~~a~f~~~l~n~~~~~~--~~~~~~~~~~~~F~----~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v   79 (237)
                      .|.+.|+|+|+|++|.+...  .... +....+.|.    .....||+++||++++|+...++||.||++.|+|+|
T Consensus        72 ~wpv~~~~tfsLlDq~~~~~~~~~~~-~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V  146 (147)
T cd03779          72 PWPFRHKVTFMLLDQNNREHVIDAFR-PDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV  146 (147)
T ss_pred             CcceEEEEEEEEECCCCCCCCcEeec-CCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence            79999999999999964332  1111 100135686    334579999999999998544699999999999987

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=98.62  E-value=5.1e-08  Score=74.73  Aligned_cols=71  Identities=27%  Similarity=0.380  Sum_probs=51.5

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEe--cccceeeeccc-----CccccccccceeccccccCCCCeeecCeEEEEEEEE
Q 026533            8 QHGWEVYAVFRLFLLDQNKGNFLILQ--DAMGAERRFHR-----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF   80 (237)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~--~~~~~~~~F~~-----~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~   80 (237)
                      ..+|.+.|+|+|.|++|.++..+...  ......+.|..     ....|||.+||++++|+.  .|||.||+++|+|+|.
T Consensus        70 ~l~wpv~a~~~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~  147 (147)
T cd03776          70 HLDWPFQGTITLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN  147 (147)
T ss_pred             ccCCcccceeEEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence            34799999999999999754322110  00002345653     235799999999999985  5899999999999873

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=98.60  E-value=8.4e-08  Score=73.49  Aligned_cols=70  Identities=21%  Similarity=0.324  Sum_probs=52.7

Q ss_pred             CCcEEEEEEEEEEEeCCCCceE---EEecccceeeecccC----ccccccccceeccccccCCCCeeecCeEEEEEEE
Q 026533            9 HGWEVYAVFRLFLLDQNKGNFL---ILQDAMGAERRFHRL----KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV   79 (237)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~---~~~~~~~~~~~F~~~----~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v   79 (237)
                      ..|.+.|+++|+|++|.+....   +... ....+.|...    ...||+.+||++++|+.++++||.||++.|.|.|
T Consensus        71 l~wp~~~~~tfsLlDq~~~~~~~~~~~~~-~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          71 LQWPFRQRVTLMLLDQSGKKNHIMETFKA-DPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             cCcceEEEEEEEEECCCCCCCCcceeeec-CCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            4799999999999999744322   1111 0023568654    3479999999999998666799999999999876

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=98.44  E-value=3.8e-07  Score=70.46  Aligned_cols=69  Identities=17%  Similarity=0.348  Sum_probs=49.2

Q ss_pred             CCcEEEEEEEEEEEeCCCC--ceE-EEecc---cceeeeccc--------CccccccccceeccccccCCCCeeecCeEE
Q 026533            9 HGWEVYAVFRLFLLDQNKG--NFL-ILQDA---MGAERRFHR--------LKREWGFDEFIPIKAFNDASNGFLLEDTCV   74 (237)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~--~~~-~~~~~---~~~~~~F~~--------~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~   74 (237)
                      ..|.+.|+|+|+|++|.++  ... ....+   ......|..        ....|||.+||++++|+.  .|||.||+++
T Consensus        71 l~wp~~a~~~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~  148 (154)
T cd03781          71 LEWPFSHRITFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIF  148 (154)
T ss_pred             cCCceeeEEEEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEE
Confidence            4899999999999999754  110 01000   001234542        234699999999999974  7899999999


Q ss_pred             EEEEE
Q 026533           75 FGAEV   79 (237)
Q Consensus        75 ~~~~v   79 (237)
                      |+|+|
T Consensus       149 Irc~v  153 (154)
T cd03781         149 LRASV  153 (154)
T ss_pred             EEEEe
Confidence            99987

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=4.7e-07  Score=89.43  Aligned_cols=130  Identities=18%  Similarity=0.190  Sum_probs=105.9

Q ss_pred             CCeEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCC
Q 026533          101 SIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQA  180 (237)
Q Consensus       101 ~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~~~~  180 (237)
                      ....+|...+...+.. ...||.|..|+.+|++.+.|+++.   ...+++|+.+...... ..|++.+++.+++.|..+.
T Consensus        26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~  100 (1093)
T KOG1863|consen   26 NQSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDN  100 (1093)
T ss_pred             cccccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCC-cceEecchhhhccccCCCC
Confidence            3345566655555544 788999999999999999999873   5779999999876655 5699999999999993332


Q ss_pred             -ceeeecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEeeec
Q 026533          181 -RHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN  235 (237)
Q Consensus       181 -~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~~~  235 (237)
                       ....+...|.|.....+||+.+|+.++++.++..||+.+|++.++++|.+...++
T Consensus       101 ~~~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~  156 (1093)
T KOG1863|consen  101 LPDPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTS  156 (1093)
T ss_pred             chhhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCc
Confidence             2234566789998889999999999999999999999999999999999987665

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=98.24  E-value=2.7e-06  Score=67.60  Aligned_cols=70  Identities=16%  Similarity=0.209  Sum_probs=50.0

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEe--cccceeeecc-cC---ccccccccceeccccccCCCCeeecCeEEEEEEEE
Q 026533            9 HGWEVYAVFRLFLLDQNKGNFLILQ--DAMGAERRFH-RL---KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF   80 (237)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~--~~~~~~~~F~-~~---~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~   80 (237)
                      ..|.+.|+|+|+|++|.+...+...  .+....+.|. ..   ...||+++||++++|+  +++||.||++.|.|.|.
T Consensus       109 L~WP~~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~  184 (186)
T cd03777         109 LPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD  184 (186)
T ss_pred             cCCceeEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence            3799999999999999642111100  0000224575 22   3479999999999997  47899999999999875

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=98.22  E-value=4.2e-06  Score=64.88  Aligned_cols=70  Identities=24%  Similarity=0.397  Sum_probs=49.8

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEE--Ee-ccc-ceeeec-ccCccccccccceeccccccCCCCeeecCeEEEEEEE
Q 026533            9 HGWEVYAVFRLFLLDQNKGNFLI--LQ-DAM-GAERRF-HRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV   79 (237)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~--~~-~~~-~~~~~F-~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v   79 (237)
                      ..|.+..+++|.|++|.+.+...  .. +.. -+-+|. ......||+..||++++|.++ +|||.||++-|+|.|
T Consensus        89 L~WPf~~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778          89 LRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             cCCceeeEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            68999999999999997544221  00 100 011233 233347999999999999853 699999999999876

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=98.00  E-value=1.7e-05  Score=61.76  Aligned_cols=71  Identities=20%  Similarity=0.248  Sum_probs=47.6

Q ss_pred             CCCCcE-EEEEEEEEEEeCCC---CceEEEe----cccc-----eeeeccc-----------------Ccccccccccee
Q 026533            7 LQHGWE-VYAVFRLFLLDQNK---GNFLILQ----DAMG-----AERRFHR-----------------LKREWGFDEFIP   56 (237)
Q Consensus         7 ~~~~w~-~~a~f~~~l~n~~~---~~~~~~~----~~~~-----~~~~F~~-----------------~~~~wG~~~fi~   56 (237)
                      ....|. +.|+++|+|++|..   ...+...    +...     ....|..                 ....|||..||+
T Consensus        66 ~~L~WP~v~a~~t~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis  145 (167)
T cd03771          66 DVLEWPCPNRQATMTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFIS  145 (167)
T ss_pred             ccccCcceeEEEEEEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCcccccccee
Confidence            356799 58999999999962   1112111    1000     0011222                 224799999999


Q ss_pred             ccccccCCCCeeecCeEEEEEEE
Q 026533           57 IKAFNDASNGFLLEDTCVFGAEV   79 (237)
Q Consensus        57 ~~~l~~~~~gfl~~d~~~~~~~v   79 (237)
                      +++|..  ++||.||++.|.+++
T Consensus       146 ~~~L~~--r~ylk~dtl~i~~~~  166 (167)
T cd03771         146 HSRLRR--RDFLKGDDLIILLDF  166 (167)
T ss_pred             HHHhcc--CCCCcCCEEEEEEEe
Confidence            999985  679999999999886

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>smart00061 MATH meprin and TRAF homology

Probab=97.71  E-value=9.1e-05  Score=51.53  Aligned_cols=43  Identities=30%  Similarity=0.624  Sum_probs=34.5

Q ss_pred             CCCCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccce
Q 026533            7 LQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFI   55 (237)
Q Consensus         7 ~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi   55 (237)
                      .+.+|+++|+|+|.|+|+.+++..  +.   ..++|.. ..+|||.+||
T Consensus        53 ~~~~w~v~a~~~~~l~~~~~~~~~--~~---~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       53 DSRKWSIEAEFTLKLVSQNGKSLS--KK---DKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             CCCCeEEEEEEEEEEEeCCCCEEe--ee---eeEEEcC-CCccceeeEC
Confidence            345899999999999999876542  22   5788987 7899999986

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=5.9e-05  Score=74.83  Aligned_cols=76  Identities=17%  Similarity=0.216  Sum_probs=66.1

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeecccC
Q 026533            9 HGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERST   87 (237)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~~~~   87 (237)
                      ..|++++++.+.+.|..++.....+.   .+|+|....++|||.+|+.+.++.+|..||+.+|++.++++|.+-+++..
T Consensus        82 ~~~s~~~~~~~~v~~~~~~~~~~~~~---~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~  157 (1093)
T KOG1863|consen   82 KSWSCGAQAVLRVKNTIDNLPDPEKA---IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL  157 (1093)
T ss_pred             cceEecchhhhccccCCCCchhhhhh---hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence            34999999999999954555454433   68999999999999999999999999999999999999999999888754

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.91  E-value=0.00071  Score=60.01  Aligned_cols=80  Identities=24%  Similarity=0.347  Sum_probs=68.5

Q ss_pred             cCCCCeEEEEEccccccC-------CceeecccEE--eCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEE
Q 026533           98 DAPSIKHVWRIENFSKLR-------SECCDSQVFS--SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIY  167 (237)
Q Consensus        98 ~~~~~~~~w~I~nfs~l~-------~~~~~S~~f~--~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~  167 (237)
                      ....+...|+|.+++..+       ...++|+.|.  .+||..+.++|-+|++.+++.++|+|+.+..++..+ ..|++.
T Consensus       276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~  355 (391)
T KOG0297|consen  276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFR  355 (391)
T ss_pred             hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCC
Confidence            356899999999995554       3578899996  489999999999999998899999999999876543 479999


Q ss_pred             EEEEEEEEeC
Q 026533          168 AEFTLRLLDQ  177 (237)
Q Consensus       168 ~~~~l~l~n~  177 (237)
                      -++++.+++|
T Consensus       356 ~~v~~~l~dq  365 (391)
T KOG0297|consen  356 QKVTLMLLDQ  365 (391)
T ss_pred             CceEEEEecc
Confidence            9999999999

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=96.75  E-value=0.0017  Score=50.37  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=28.6

Q ss_pred             ccccccccceeccccccCCCCeeecCeEEEEEEE
Q 026533           46 KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV   79 (237)
Q Consensus        46 ~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v   79 (237)
                      ..++||+.||+++.|..  ++||.||++.|.+++
T Consensus       135 ~~gfG~~~Fish~~L~~--r~yikdDtlfI~~~~  166 (167)
T cd03783         135 GIDFGWSTFISHSQLRR--RSFLKNDDLIIFVDF  166 (167)
T ss_pred             CcccccccceeHHHHhh--CCcccCCeEEEEEec
Confidence            34899999999999984  899999999998875

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=96.38  E-value=0.005  Score=47.64  Aligned_cols=69  Identities=16%  Similarity=0.252  Sum_probs=47.9

Q ss_pred             CCcEEE-EEEEEEEEeCCC---CceEEEe--cc--cceee---ec--ccC-----------------ccccccccceecc
Q 026533            9 HGWEVY-AVFRLFLLDQNK---GNFLILQ--DA--MGAER---RF--HRL-----------------KREWGFDEFIPIK   58 (237)
Q Consensus         9 ~~w~~~-a~f~~~l~n~~~---~~~~~~~--~~--~~~~~---~F--~~~-----------------~~~wG~~~fi~~~   58 (237)
                      ..|.+. -+.+|.|++|..   ...+...  .+  .....   .|  ...                 ..++|++.||+++
T Consensus        68 L~WPf~~~qit~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~  147 (167)
T cd03782          68 LQWPCPWQQATMMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHL  147 (167)
T ss_pred             ccCCCcCCeEEEEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHH
Confidence            579988 899999999963   2233222  11  00001   24  222                 4689999999999


Q ss_pred             ccccCCCCeeecCeEEEEEEE
Q 026533           59 AFNDASNGFLLEDTCVFGAEV   79 (237)
Q Consensus        59 ~l~~~~~gfl~~d~~~~~~~v   79 (237)
                      .|..  +.||.||.+.|-+++
T Consensus       148 ~L~~--r~yikdD~ifi~~~~  166 (167)
T cd03782         148 RLRS--RDFIKGDDVIFLLTM  166 (167)
T ss_pred             HHhh--cCcccCCeEEEEEec
Confidence            9984  889999999988765

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	2e-26
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	7e-12
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	3e-26
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	2e-10
1d00_A	168	Tumor necrosis factor receptor associated protein	9e-18
1d00_A	168	Tumor necrosis factor receptor associated protein	7e-05
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	1e-17
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	7e-17
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	5e-05
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	2e-14
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	2e-05
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	8e-14
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	1e-13
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	4e-12
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	2e-06

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score = 99.5 bits (248), Expect = 2e-26
 Identities = 22/136 (16%), Positives = 54/136 (39%), Gaps = 7/136 (5%)

Query: 103 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGT-HLAVYLALADSTTLT 161
              + +E FS+L SE   S      +  W+I + P+          +  +L   ++ + +
Sbjct: 20  TFQFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQC-NAESDS 77

Query: 162 PGSKIYAEFTLRLLDQA-QARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKD 220
                +A+  L++++     +  + +    F     + G++ +++++    P  G +  D
Sbjct: 78  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 137

Query: 221 VCLVEAEVTV---HGI 233
               E  V     HG+
Sbjct: 138 KVTFEVFVQADAPHGV 153

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score = 60.6 bits (147), Expect = 7e-12
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 5/86 (5%)

Query: 3   NTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFND 62
           N  S    W  +A   L +++         +        F   + +WGF  F+      D
Sbjct: 72  NAESDSTSWSCHAQAVLKIINYRDDEKSFSRRI---SHLFFHKENDWGFSNFMAWSEVTD 128

Query: 63  ASNGFLLEDTCVFGAEVFVSKERSTG 88
              GF+ +D   F   V        G
Sbjct: 129 PEKGFIDDDKVTFEVFVQADAP--HG 152

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 98.5 bits (245), Expect = 3e-26
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 11/135 (8%)

Query: 103 KHVWRIENFSKLRS---ECCDSQVFSSG---DQKWQIQLYPKGRRHGTGTHLAVYLALAD 156
            ++W I NFS  R    E   S  FSSG     KW +++ PKG    +  +L++YL L  
Sbjct: 12  SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 71

Query: 157 STTLTPGSKIYAEFTLRLLDQAQAR-HIAGKADFWFSASNPESGWARYVSFTYFNKPGNG 215
                P S++ A+F   +L+              +      + G+ +++   +     NG
Sbjct: 72  C----PKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANG 127

Query: 216 CLVKDVCLVEAEVTV 230
            L  D   +  EV+V
Sbjct: 128 LLPDDKLTLFCEVSV 142

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 56.5 bits (136), Expect = 2e-10
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 9   HGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFL 68
              EV A F+  +L+        ++             ++WGF +FI      D +NG L
Sbjct: 73  PKSEVRAKFKFSILNAKGEETKAMESQR---AYRFVQGKDWGFKKFIRRDFLLDEANGLL 129

Query: 69  LEDTCVFGAEVFVSKE 84
            +D      EV V ++
Sbjct: 130 PDDKLTLFCEVSVVQD 145

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 77.0 bits (189), Expect = 9e-18
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 103 KHVWRIENFSKLRSE-------CCDSQVFSSGDQ--KWQIQLYPKGRRHGTGTHLAVYLA 153
             +W+I +F++ R E          S  F +     K  +++Y  G   G GTHL+++  
Sbjct: 20  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 79

Query: 154 LADSTT-LTPGSKIYAEFTLRLLDQAQARHIAGKADFW---------FSASNPESGWARY 203
           +               + TL LLDQ    H+                 +  N  SG   +
Sbjct: 80  VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 139

Query: 204 VSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 233
              +   +  N  +  D   ++A V + G+
Sbjct: 140 CPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 168

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 2   ENTSSLQHGWEVYAVFRLFLLDQN-KGNFLILQDAMGAERRFHRLKRE----WGFDEFIP 56
            N + L+  W       L LLDQN + + +           F R   +     G   F P
Sbjct: 84  PNDALLR--WPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCP 141

Query: 57  IKAFNDASNGFLLEDTCVFGAEVFVSK 83
           +    +A N ++ +D     A V ++ 
Sbjct: 142 VSKM-EAKNSYVRDDAIFIKAIVDLTG 167

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 79.2 bits (195), Expect = 1e-17
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 11/139 (7%)

Query: 103 KHVWRIENFSKLRS---ECCDSQVFSSG---DQKWQIQLYPKGRRHGTGTHLAVYLALAD 156
            ++W I NFS  R    E   S  FSSG     KW +++ PKG    +  +L++YL L  
Sbjct: 8   SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 67

Query: 157 STTLTPGSKIYAEFTLRLLDQA-QARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNG 215
                P S++ A+F   +L+   +          +      + G+ +++   +     NG
Sbjct: 68  ----CPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANG 123

Query: 216 CLVKDVCLVEAEVTVHGIS 234
            L  D   +  EV+V   S
Sbjct: 124 LLPDDKLTLFCEVSVVQDS 142

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 75.0 bits (184), Expect = 7e-17
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 20/150 (13%)

Query: 103 KHVWRIENFSKLRSE-------CCDSQVFSSGDQ--KWQIQLYPKGRRHGTGTHLAVYLA 153
             +W+I +F++ R E          S  F +     K  +++Y  G   G GTHL+++  
Sbjct: 44  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 103

Query: 154 LADSTT-LTPGSKIYAEFTLRLLDQAQARHIAGKADFW---------FSASNPESGWARY 203
           +               + TL LLDQ    H+                 +  N  SG   +
Sbjct: 104 VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 163

Query: 204 VSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 233
              +      N  +  D   ++A V + G+
Sbjct: 164 CPVSKMEAK-NSYVRDDAIFIKAIVDLTGL 192

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 2   ENTSSLQHGWEVYAVFRLFLLDQ-NKGNFLILQDAMGAERRFHRLKRE----WGFDEFIP 56
            N + L+  W       L LLDQ N+ + +           F R   +     G   F P
Sbjct: 108 PNDALLR--WPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCP 165

Query: 57  IKAFNDASNGFLLEDTCVFGAEVFVSK 83
           +    +A N ++ +D     A V ++ 
Sbjct: 166 VSKM-EAKNSYVRDDAIFIKAIVDLTG 191

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 70.8 bits (173), Expect = 2e-14
 Identities = 18/131 (13%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 103 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGT-HLAVYLALADSTTLT 161
              + +E FS+L      S      +  W+I + P+          +  +L   ++ + +
Sbjct: 32  TFQFTVERFSRLSESVL-SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQ-CNAESDS 89

Query: 162 PGSKIYAEFTLRLLDQA-QARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKD 220
                +A+  L++++     +  + +    F     + G++ +++++    P  G +  D
Sbjct: 90  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 149

Query: 221 VCLVEAEVTVH 231
               E  V   
Sbjct: 150 KVTFEVFVQAD 160

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 3   NTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFND 62
           N  S    W  +A   L +++         +        F   + +WGF  F+      D
Sbjct: 84  NAESDSTSWSCHAQAVLKIINYRDDEKSFSRRI---SHLFFHKENDWGFSNFMAWSEVTD 140

Query: 63  ASNGFLLEDTCVFGAEVFVSKER 85
              GF+ +D   F   V      
Sbjct: 141 PEKGFIDDDKVTFEVFVQADAPH 163

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 67.4 bits (164), Expect = 8e-14
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 28/155 (18%)

Query: 103 KHVWRIENFSKLRSE-------CCDSQVFSSGDQ--KWQIQLYPKGRRHGTGTHLAVYLA 153
             +W+I ++ + + E          SQ F +G    K   ++Y  G   G GTHL+++  
Sbjct: 77  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 136

Query: 154 LA----DSTTLTPGSKIYAEFTLRLLDQAQARH--------IAGKADFW--FSASNPESG 199
           +     D+    P      + TL L+DQ  +R             + F       N  SG
Sbjct: 137 IMRGEYDALLPWP---FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 193

Query: 200 WARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGIS 234
              +V+ T         +  D   ++  V    + 
Sbjct: 194 CPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 226

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 66.2 bits (161), Expect = 1e-13
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 28/155 (18%)

Query: 103 KHVWRIENFSKLRSE-------CCDSQVFSSGDQ--KWQIQLYPKGRRHGTGTHLAVYLA 153
             +W+I ++ + + E          SQ F +G    K   ++Y  G   G GTHL+++  
Sbjct: 41  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 100

Query: 154 LA----DSTTLTPGSKIYAEFTLRLLDQAQARH--------IAGKADFW--FSASNPESG 199
           +     D+    P      + TL L+DQ  +R             + F       N  SG
Sbjct: 101 IMRGEYDALLPWP---FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 157

Query: 200 WARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGIS 234
              +V+ T         +  D   ++  V    + 
Sbjct: 158 CPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 190

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 61.1 bits (148), Expect = 4e-12
 Identities = 24/155 (15%), Positives = 45/155 (29%), Gaps = 28/155 (18%)

Query: 103 KHVWRIENFSKLRSE-------CCDSQVFSSGDQ--KWQIQLYPKGRRHG-TGTHLAVYL 152
            ++W+I NF                S  F +G    K  ++L+ +         ++++++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 153 ALADSTT-LTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNK 211
                               L +LDQ++A       +    A      + R       N 
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEI-MDAKPELLAFQRPTIPR--NP 122

Query: 212 PGNGC--------------LVKDVCLVEAEVTVHG 232
            G G               +  D  LV  EV+   
Sbjct: 123 KGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRF 157

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 11  WEVYAVFRLFLLDQN----KGNFLILQDAMGAERRFHRLKRE-----WGFDEFIPIKAFN 61
           W      RL +LDQ+    + N   + DA      F R         +G+  F+ ++A  
Sbjct: 78  WPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR 137

Query: 62  DASNGFLLEDTCVFGAEVFVSKE 84
                F+ +DT +   EV    +
Sbjct: 138 --QRTFIKDDTLLVRCEVSTRFD 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	100.0
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.97
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.96
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.96
1d00_A	168	Tumor necrosis factor receptor associated protein	99.95
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.95
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.95
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.95
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.94
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.94
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.93
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.61
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.57
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.44
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.28
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.27
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.23
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.11
1d00_A	168	Tumor necrosis factor receptor associated protein	99.1
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.06
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.0
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	98.96
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	98.93
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	93.5

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=100.00  E-value=4.4e-33  Score=214.89  Aligned_cols=137  Identities=14%  Similarity=0.245  Sum_probs=117.3

Q ss_pred             CCCCeEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcC-CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 026533           99 APSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRH-GTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQ  177 (237)
Q Consensus        99 ~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~-~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~  177 (237)
                      ...++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+.. +.++||||||+|.. +..+.+|++.|+|+|+|+||
T Consensus        16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~-~~~~~~w~v~a~~~l~l~~~   93 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNA-ESDSTSWSCHAQAVLKIINY   93 (155)
T ss_dssp             CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEEST-TCCCSSCEEEEEEEEEECCS
T ss_pred             CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCC-CCCCCCCEEEEEEEEEEEcC
Confidence            45689999999999996 78999999999999999999999765 35789999999964 44466899999999999999


Q ss_pred             CCCc-eeeecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEeeecCC
Q 026533          178 AQAR-HIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL  237 (237)
Q Consensus       178 ~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~~~~~  237 (237)
                      +++. +..+...++|.....+|||++||++++|+++.+|||+||+|+|+|+|+|.+++|++
T Consensus        94 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~  154 (155)
T 2foj_A           94 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA  154 (155)
T ss_dssp             SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred             CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence            8765 44455678898767889999999999999888999999999999999999999974

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.97  E-value=2.8e-31  Score=202.58  Aligned_cols=131  Identities=27%  Similarity=0.480  Sum_probs=113.3

Q ss_pred             cCCCCeEEEEEccccccC---CceeecccEEeCCe---EEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEE
Q 026533           98 DAPSIKHVWRIENFSKLR---SECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFT  171 (237)
Q Consensus        98 ~~~~~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~  171 (237)
                      +...++|+|+|+|||.++   ++.++||+|.+|||   +|+|++||+|+..+.++|||+||+|.+.    +.|++.|+|+
T Consensus         7 ~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~   82 (145)
T 3ivv_A            7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFK   82 (145)
T ss_dssp             CCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEE
T ss_pred             cEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEE
Confidence            456789999999999986   57899999999996   9999999999877667899999999873    5799999999


Q ss_pred             EEEEeCCCCceee--ecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEee
Q 026533          172 LRLLDQAQARHIA--GKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI  233 (237)
Q Consensus       172 l~l~n~~~~~~~~--~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~  233 (237)
                      |+|+||.++.+..  ....++|.. ..+|||++||++++|+++++|||+||+|+|+|+|+|+++
T Consensus        83 l~llnq~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           83 FSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             EEEECTTSCEEEEEECSSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             EEEEecCCCceeeecccceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            9999999876542  234678864 578999999999999776789999999999999999863

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.96  E-value=3.6e-30  Score=202.91  Aligned_cols=136  Identities=24%  Similarity=0.350  Sum_probs=113.1

Q ss_pred             cCCCCeEEEEEccccccCC-------ceeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCC-CCCCCeEE
Q 026533           98 DAPSIKHVWRIENFSKLRS-------ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTT-LTPGSKIY  167 (237)
Q Consensus        98 ~~~~~~~~w~I~nfs~l~~-------~~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~-~~~~~~~~  167 (237)
                      ....+.|+|+|+|||.+++       ..++|++|.+|  ||+|+|++||+|+..+.++|||+||+|.+++. ...+|++.
T Consensus        20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~   99 (178)
T 4gjh_A           20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR   99 (178)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred             cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence            4678999999999999863       27999999999  99999999999988766799999999987543 12479999


Q ss_pred             EEEEEEEEeCCCCc-eeeec-----ceeecCC----CCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEee
Q 026533          168 AEFTLRLLDQAQAR-HIAGK-----ADFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI  233 (237)
Q Consensus       168 ~~~~l~l~n~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~  233 (237)
                      |+|+|+|+||.+.. +....     ..+.|+.    .+.+|||.+||++++|+++.+|||+||+|+|+|+|+|.++
T Consensus       100 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~  175 (178)
T 4gjh_A          100 QRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL  175 (178)
T ss_dssp             CEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred             EEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence            99999999998653 33221     3467763    3568999999999999988899999999999999987543

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.96  E-value=2.2e-29  Score=200.80  Aligned_cols=133  Identities=23%  Similarity=0.354  Sum_probs=110.5

Q ss_pred             CCCCeEEEEEccccccCC-----c--eeecccEEe--CCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 026533           99 APSIKHVWRIENFSKLRS-----E--CCDSQVFSS--GDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYA  168 (237)
Q Consensus        99 ~~~~~~~w~I~nfs~l~~-----~--~~~S~~f~~--gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~~  168 (237)
                      ...+.|+|+|+|||.+++     +  .++||+|.+  ||++|+|++||+|+..+.++|||+||++.+++..+ .+|++.|
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a  119 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ  119 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence            578999999999999863     2  599999999  99999999999998776679999999998765544 6899999


Q ss_pred             EEEEEEEeCCCCceeeecc-----eeecCC----CCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEe
Q 026533          169 EFTLRLLDQAQARHIAGKA-----DFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG  232 (237)
Q Consensus       169 ~~~l~l~n~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~  232 (237)
                      +|+|+|+||.+..+.....     ...|.+    .+.+|||++||++++|++ .+|||+||+|+|+|+|+|.+
T Consensus       120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~  191 (192)
T 1ca9_A          120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG  191 (192)
T ss_dssp             CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence            9999999999875542221     124642    356899999999999985 37999999999999998853

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.95  E-value=5.2e-29  Score=194.48  Aligned_cols=132  Identities=22%  Similarity=0.337  Sum_probs=109.4

Q ss_pred             CCCCeEEEEEccccccC-----Cc--eeecccEE--eCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 026533           99 APSIKHVWRIENFSKLR-----SE--CCDSQVFS--SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYA  168 (237)
Q Consensus        99 ~~~~~~~w~I~nfs~l~-----~~--~~~S~~f~--~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~~  168 (237)
                      ...+.|+|+|+|||.++     ++  .++||+|.  +||++|+|++||+|+..+.++|||+||++.+++..+ .+|++.|
T Consensus        16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~   95 (168)
T 1d00_A           16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (168)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence            46899999999999986     23  38999996  799999999999998776679999999998765543 6899999


Q ss_pred             EEEEEEEeCCCCceeeecc-----eeecCC----CCccccccceeeccccCCCCCceeeCCEEEEEEEEEEE
Q 026533          169 EFTLRLLDQAQARHIAGKA-----DFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVH  231 (237)
Q Consensus       169 ~~~l~l~n~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~  231 (237)
                      +|+|+|+||.+..+.....     ...|..    .+.+|||++||++++|+++ +|||+||+|+|+|+|+|.
T Consensus        96 ~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~  166 (168)
T 1d00_A           96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT  166 (168)
T ss_dssp             CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred             EEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence            9999999999876543221     235653    3578999999999999973 399999999999999874

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.95  E-value=5.3e-28  Score=187.34  Aligned_cols=132  Identities=16%  Similarity=0.179  Sum_probs=104.1

Q ss_pred             CCCeEEEEEccccccC-----Cc--eeecccEEeC--CeEEEEEEEeCCCcCCC-CCeEEEEEEecCCCCC-CCCCeEEE
Q 026533          100 PSIKHVWRIENFSKLR-----SE--CCDSQVFSSG--DQKWQIQLYPKGRRHGT-GTHLAVYLALADSTTL-TPGSKIYA  168 (237)
Q Consensus       100 ~~~~~~w~I~nfs~l~-----~~--~~~S~~f~~g--g~~W~l~vyp~G~~~~~-~~~lslyL~~~~~~~~-~~~~~~~~  168 (237)
                      ..+.|+|+|+|||.++     ++  .++|++|.+|  ||+|+|++||+|+..+. ++|||+||++.+++.. ..+|++.|
T Consensus         3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a   82 (160)
T 1lb6_A            3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG   82 (160)
T ss_dssp             CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence            4689999999999986     33  8999999999  99999999999987543 7899999999876543 34699999


Q ss_pred             EEEEEEEeCCCCc---eeeec-----ceeecCC-----CCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEee
Q 026533          169 EFTLRLLDQAQAR---HIAGK-----ADFWFSA-----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI  233 (237)
Q Consensus       169 ~~~l~l~n~~~~~---~~~~~-----~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~  233 (237)
                      +|+|+|+||.+..   +....     ....|.+     ...+|||++||++++|+.  +|||+||+|+|+|+|+|+..
T Consensus        83 ~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~  158 (160)
T 1lb6_A           83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD  158 (160)
T ss_dssp             EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred             eEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence            9999999998652   11111     1123542     124799999999999995  79999999999999999864

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.95  E-value=1e-28  Score=197.30  Aligned_cols=135  Identities=21%  Similarity=0.340  Sum_probs=110.5

Q ss_pred             cCCCCeEEEEEccccccCC-------ceeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEE
Q 026533           98 DAPSIKHVWRIENFSKLRS-------ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIY  167 (237)
Q Consensus        98 ~~~~~~~~w~I~nfs~l~~-------~~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~  167 (237)
                      ....+.|+|+|+|||.+++       +.++||+|.+|  |++|+|++||+|+..+.++||||||++.+++.. ...|++.
T Consensus        36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~  115 (198)
T 4ghu_A           36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK  115 (198)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence            3567999999999999863       68999999999  999999999999987678899999999875542 3489999


Q ss_pred             EEEEEEEEeCCCCc-eeeec-----ceeec----CCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEeee
Q 026533          168 AEFTLRLLDQAQAR-HIAGK-----ADFWF----SASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGIS  234 (237)
Q Consensus       168 ~~~~l~l~n~~~~~-~~~~~-----~~~~F----~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~~  234 (237)
                      |+|+|+|+||.+.. +....     ....|    ...+.+|||++||++++|++  +|||+||+|+|+|+|+|+.-.
T Consensus       116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~  190 (198)
T 4ghu_A          116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP  190 (198)
T ss_dssp             CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC
T ss_pred             EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCC
Confidence            99999999998642 32211     11123    33457899999999999996  799999999999999987643

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.95  E-value=2e-28  Score=195.09  Aligned_cols=132  Identities=22%  Similarity=0.349  Sum_probs=109.2

Q ss_pred             CCCCeEEEEEccccccC-----Cc--eeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEEE
Q 026533           99 APSIKHVWRIENFSKLR-----SE--CCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYA  168 (237)
Q Consensus        99 ~~~~~~~w~I~nfs~l~-----~~--~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~~  168 (237)
                      ...++|+|+|+|||.++     ++  .++|++|.+|  ||+|+|++||+|++.+.++|+|+||++.+++.. ..+|++.|
T Consensus        37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a  116 (192)
T 2gkw_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  116 (192)
T ss_dssp             CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEE
Confidence            36889999999999986     33  5999999999  999999999999877678999999999876543 24799999


Q ss_pred             EEEEEEEeCCCCc-eeeec-----ceeecCC----CCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEe
Q 026533          169 EFTLRLLDQAQAR-HIAGK-----ADFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG  232 (237)
Q Consensus       169 ~~~l~l~n~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~  232 (237)
                      +|+|+|+||.+.. +....     ..+.|.+    .+.+|||++||++++|++  +|||+||+|+|+|+|.|..
T Consensus       117 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~  188 (192)
T 2gkw_A          117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD  188 (192)
T ss_dssp             CEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence            9999999998763 33211     1245754    246899999999999986  6999999999999997754

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.94  E-value=9.9e-28  Score=195.86  Aligned_cols=133  Identities=22%  Similarity=0.343  Sum_probs=110.4

Q ss_pred             CCCCeEEEEEccccccCC-------ceeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEEE
Q 026533           99 APSIKHVWRIENFSKLRS-------ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYA  168 (237)
Q Consensus        99 ~~~~~~~w~I~nfs~l~~-------~~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~~  168 (237)
                      ...+.|+|+|.|||.++.       ..++|++|.+|  ||+|+|++||+|++.+.++|+|+||++.+++.. ..+|++.|
T Consensus        73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a  152 (228)
T 1flk_A           73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  152 (228)
T ss_dssp             CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred             CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence            478999999999999862       27999999999  999999999999887678999999999876553 34799999


Q ss_pred             EEEEEEEeCCCCc-eeee-----cceeecCC----CCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEee
Q 026533          169 EFTLRLLDQAQAR-HIAG-----KADFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI  233 (237)
Q Consensus       169 ~~~l~l~n~~~~~-~~~~-----~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~  233 (237)
                      +|+|+|+||.+.. +...     ...+.|.+    .+.+|||++||++++|++  +|||+||+|+|+|+|+|.+.
T Consensus       153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~  225 (228)
T 1flk_A          153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL  225 (228)
T ss_dssp             CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTS
T ss_pred             EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEcccc
Confidence            9999999998764 2221     12234652    346899999999999997  79999999999999988654

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.94  E-value=2.1e-26  Score=196.48  Aligned_cols=127  Identities=28%  Similarity=0.505  Sum_probs=107.2

Q ss_pred             CCeEEEEEccccccC---CceeecccEEeCCe---EEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 026533          101 SIKHVWRIENFSKLR---SECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRL  174 (237)
Q Consensus       101 ~~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l  174 (237)
                      .++|+|+|+|||.++   ++.+.||+|.+||+   +|+|++||+|+..+.++|+|+||+|.++    +.|++.|+|+|+|
T Consensus         6 ~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~l   81 (312)
T 3hqi_A            6 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI   81 (312)
T ss_dssp             EEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEEE
T ss_pred             EEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEEEE
Confidence            468999999999996   68899999999995   9999999999877667999999999863    4689999999999


Q ss_pred             EeCCCCceee--ecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEe
Q 026533          175 LDQAQARHIA--GKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG  232 (237)
Q Consensus       175 ~n~~~~~~~~--~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~  232 (237)
                      +||++.....  ....+.|.. ..+|||++||++++|+++.+|||+||+|+|+|+|+|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~  140 (312)
T 3hqi_A           82 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQ  140 (312)
T ss_dssp             ECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEE
T ss_pred             EeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEe
Confidence            9999876542  235678875 46899999999999988778999999999999999995

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.93  E-value=3.7e-26  Score=207.66  Aligned_cols=135  Identities=13%  Similarity=0.247  Sum_probs=113.1

Q ss_pred             CCCCeEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcCC-CCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 026533           99 APSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHG-TGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQ  177 (237)
Q Consensus        99 ~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~~-~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~  177 (237)
                      ...++|+|+|+|||.+++ .++|++|.+||++|+|++||+|+..+ .++|||+||.|.+. ..+.+|.+.|+|+|+|+|+
T Consensus        28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~  105 (522)
T 2f1z_A           28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY  105 (522)
T ss_dssp             CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT
T ss_pred             cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC
Confidence            447899999999999986 89999999999999999999997543 56899999999875 5567899999999999999


Q ss_pred             CCCce-eeecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEeeec
Q 026533          178 AQARH-IAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN  235 (237)
Q Consensus       178 ~~~~~-~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~~~  235 (237)
                      .++.. ..+...++|.....+|||.+||++++|.++.+|||+||+++|+|+|+|...+|
T Consensus       106 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g  164 (522)
T 2f1z_A          106 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG  164 (522)
T ss_dssp             TCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred             CCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccc
Confidence            87543 44566788987778899999999999987778999999999999999976665

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.61  E-value=8.4e-16  Score=117.85  Aligned_cols=78  Identities=19%  Similarity=0.367  Sum_probs=68.0

Q ss_pred             CCCCCCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeec
Q 026533            5 SSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE   84 (237)
Q Consensus         5 ~~~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~   84 (237)
                      +..+.+|+++|+|+|.|+||.+++.+..+.   ..|+|.....+|||++||++++|++|.+|||+||+++|+|+|.|.++
T Consensus        74 ~~~~~~w~v~a~~~l~l~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~  150 (155)
T 2foj_A           74 ESDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAP  150 (155)
T ss_dssp             TCCCSSCEEEEEEEEEECCSSCGGGCEEEE---EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCC
T ss_pred             CCCCCCCEEEEEEEEEEEcCCCCcceEEec---cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCc
Confidence            455788999999999999998876444444   57899887789999999999999999999999999999999999766


Q ss_pred             c
Q 026533           85 R   85 (237)
Q Consensus        85 ~   85 (237)
                      +
T Consensus       151 t  151 (155)
T 2foj_A          151 H  151 (155)
T ss_dssp             B
T ss_pred             c
Confidence            5

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.57  E-value=2e-15  Score=114.52  Aligned_cols=73  Identities=27%  Similarity=0.453  Sum_probs=63.5

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeec
Q 026533            9 HGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE   84 (237)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~   84 (237)
                      ++|+++|+|+|.|+||.+++.......  ..|+|+. ..+|||++||++++|+++++|||+||+++|+|+|.|+++
T Consensus        73 ~~w~v~a~f~l~llnq~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           73 PKSEVRAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             SSSEEEEEEEEEEECTTSCEEEEEECS--SCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             CCCcEEEEEEEEEEecCCCceeeeccc--ceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            579999999999999998876654433  5789975 689999999999999988899999999999999999864

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.44  E-value=3e-13  Score=123.09  Aligned_cols=128  Identities=19%  Similarity=0.217  Sum_probs=99.7

Q ss_pred             cCCCCeEEEEEccccccC---CceeecccEE-eCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEE-EEEE
Q 026533           98 DAPSIKHVWRIENFSKLR---SECCDSQVFS-SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIY-AEFT  171 (237)
Q Consensus        98 ~~~~~~~~w~I~nfs~l~---~~~~~S~~f~-~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~-~~~~  171 (237)
                      +..+..+.|+|.||+++.   +..++||+|. ..||.++|.+||++     ..|+|||++|.++++. ...|++. -+++
T Consensus       402 ~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t  476 (592)
T 4gwm_A          402 ETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQAT  476 (592)
T ss_dssp             SSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEE
T ss_pred             eCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEE
Confidence            577889999999999985   5689999996 58999999999974     5799999999987654 3589995 6799


Q ss_pred             EEEEeCCCCce----e----eec-------ce------------eecCC-----CCccccccceeeccccCCCCCceeeC
Q 026533          172 LRLLDQAQARH----I----AGK-------AD------------FWFSA-----SNPESGWARYVSFTYFNKPGNGCLVK  219 (237)
Q Consensus       172 l~l~n~~~~~~----~----~~~-------~~------------~~F~~-----~~~~~G~~~fi~~~~L~~~~~gfl~~  219 (237)
                      +.|+||+....    .    +..       ..            ..|..     .+.+|||+.||+++.|..  +.||+|
T Consensus       477 ~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~  554 (592)
T 4gwm_A          477 MTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKG  554 (592)
T ss_dssp             EEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBT
T ss_pred             EEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccC
Confidence            99999975421    1    100       00            11221     235689999999999996  689999


Q ss_pred             CEEEEEEEEEEEe
Q 026533          220 DVCLVEAEVTVHG  232 (237)
Q Consensus       220 D~l~ie~~v~v~~  232 (237)
                      |+|+|.++|+=+.
T Consensus       555 d~~~i~~~~eD~~  567 (592)
T 4gwm_A          555 DDVYILLTVEDIS  567 (592)
T ss_dssp             TBEEEEEEEEECG
T ss_pred             CeEEEEEEEEeCc
Confidence            9999999997553

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.28  E-value=1.8e-12  Score=117.62  Aligned_cols=77  Identities=19%  Similarity=0.371  Sum_probs=68.0

Q ss_pred             CCCCCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeecc
Q 026533            6 SLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER   85 (237)
Q Consensus         6 ~~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~~   85 (237)
                      +.+++|+++|+|+|.|+|+++++.+..+.   ..|+|.....+|||.+||++++|.++.+|||+||+++|+|+|.|..+.
T Consensus        87 ~~~~~w~v~a~f~l~l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~  163 (522)
T 2f1z_A           87 SDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  163 (522)
T ss_dssp             CCCSSCBEEEEEEEEECCTTCGGGCEEEE---CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred             CCCCCceEEEEEEEEEEcCCCCccceecc---ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence            56889999999999999999887655554   578898878899999999999999989999999999999999997554

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.27  E-value=9.5e-13  Score=103.08  Aligned_cols=76  Identities=21%  Similarity=0.340  Sum_probs=59.6

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEec--ccceeeeccc----CccccccccceeccccccCCCCeeecCeEEEEEEEEE
Q 026533            8 QHGWEVYAVFRLFLLDQNKGNFLILQD--AMGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV   81 (237)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~--~~~~~~~F~~----~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v   81 (237)
                      +.+|.++|+|+|+|+||.++..+....  +....+.|+.    ...+|||++||++++|++|++|||+||+++|+|+|.|
T Consensus        93 ~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i  172 (178)
T 4gjh_A           93 LLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL  172 (178)
T ss_dssp             GSCSSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred             ccCCceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence            357999999999999998765443321  0002467863    3568999999999999999999999999999999966


Q ss_pred             ee
Q 026533           82 SK   83 (237)
Q Consensus        82 ~~   83 (237)
                      .+
T Consensus       173 ~~  174 (178)
T 4gjh_A          173 TD  174 (178)
T ss_dssp             TT
T ss_pred             cC
Confidence            43

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.23  E-value=1e-11  Score=105.43  Aligned_cols=74  Identities=27%  Similarity=0.439  Sum_probs=63.7

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeecc
Q 026533            9 HGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER   85 (237)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~~   85 (237)
                      ++|+++|+|+|.|+||++++....+..  ..++|.. ..+|||++||++++|+++.+|||+||+++|+|+|.|++..
T Consensus        69 ~~~~v~a~~~~~l~~~~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~  142 (312)
T 3hqi_A           69 PKSEVRAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDS  142 (312)
T ss_dssp             CC-CEEEEEEEEEECTTSCEEEEEECS--SCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEEeCCCCcccccccC--CceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEecc
Confidence            589999999999999988776654433  6789986 4699999999999999888999999999999999999765

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.11  E-value=1.2e-11  Score=97.94  Aligned_cols=74  Identities=22%  Similarity=0.305  Sum_probs=55.6

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEeccc-ceeeecc----cCccccccccceeccccccCCCCeeecCeEEEEEEEEEee
Q 026533            9 HGWEVYAVFRLFLLDQNKGNFLILQDAM-GAERRFH----RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK   83 (237)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~-~~~~~F~----~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~   83 (237)
                      .+|+++|+|+|.|+||.+++.....-.. ...+.|.    ....+|||++||++++|++ .+|||+||+++|+|+|.|.+
T Consensus       113 ~~W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~  191 (192)
T 1ca9_A          113 LRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG  191 (192)
T ss_dssp             SCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred             CCCceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence            6899999999999999877532111000 0123464    2346899999999999997 58999999999999998753

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.10  E-value=2.1e-11  Score=94.44  Aligned_cols=72  Identities=24%  Similarity=0.372  Sum_probs=54.9

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEecc--cceeeeccc----CccccccccceeccccccCCCCeeecCeEEEEEEEEEe
Q 026533            9 HGWEVYAVFRLFLLDQNKGNFLILQDA--MGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVS   82 (237)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~--~~~~~~F~~----~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~   82 (237)
                      .+|+++|+|+|.|+||.+.+... ...  ....+.|..    ...+|||.+||++++|+++ +|||+||+++|+|+|.|.
T Consensus        89 ~~w~~~~~~~l~ll~q~~~~~~~-~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~  166 (168)
T 1d00_A           89 LRWPFNQKVTLMLLDQNNREHVI-DAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT  166 (168)
T ss_dssp             SCSSCCCCEEEEECCTTSSCCEE-EEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred             CCCceEEEEEEEEECCCCCccce-eccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence            68999999999999998765332 110  001245653    3568999999999999974 499999999999999764

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.06  E-value=6.1e-11  Score=91.06  Aligned_cols=73  Identities=22%  Similarity=0.390  Sum_probs=52.3

Q ss_pred             CCCcEEEEEEEEEEEeCCCCce--E----EEecccceeeeccc-----CccccccccceeccccccCCCCeeecCeEEEE
Q 026533            8 QHGWEVYAVFRLFLLDQNKGNF--L----ILQDAMGAERRFHR-----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFG   76 (237)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~--~----~~~~~~~~~~~F~~-----~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~   76 (237)
                      +.+|.++|+|+|+|+||.++..  +    ...+.  ..+.|..     ...+|||++||++++|+  ++|||.||+++|+
T Consensus        75 ~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~--~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~  150 (160)
T 1lb6_A           75 HLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKP--ELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVR  150 (160)
T ss_dssp             GSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCT--TSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEE
T ss_pred             cCCCceeeeEEEEEEcCCCccccccceEEeecCC--cchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEE
Confidence            3579999999999999976521  1    10111  1234542     12379999999999998  4899999999999


Q ss_pred             EEEEEeec
Q 026533           77 AEVFVSKE   84 (237)
Q Consensus        77 ~~v~v~~~   84 (237)
                      |+|.|+.+
T Consensus       151 ~~V~v~~~  158 (160)
T 1lb6_A          151 CEVSTRFD  158 (160)
T ss_dssp             EEEEC---
T ss_pred             EEEEEeec
Confidence            99999865

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.00  E-value=5.5e-11  Score=94.50  Aligned_cols=75  Identities=15%  Similarity=0.173  Sum_probs=57.7

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEecc-c-----ceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEe
Q 026533            9 HGWEVYAVFRLFLLDQNKGNFLILQDA-M-----GAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVS   82 (237)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~-~-----~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~   82 (237)
                      .+|.++|+|+|+|+||.+++.+..... .     .-.+.|.....+|||++||++++|++  +|||.||+++|+|+|.|+
T Consensus       110 l~wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~  187 (198)
T 4ghu_A          110 LPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTS  187 (198)
T ss_dssp             SCSSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCT
T ss_pred             CCceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEec
Confidence            589999999999999987654433210 0     01123445567899999999999985  899999999999999988


Q ss_pred             ecc
Q 026533           83 KER   85 (237)
Q Consensus        83 ~~~   85 (237)
                      ..+
T Consensus       188 ~~~  190 (198)
T 4ghu_A          188 DLP  190 (198)
T ss_dssp             TCC
T ss_pred             cCC
Confidence            665

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=98.96  E-value=1.5e-10  Score=94.04  Aligned_cols=74  Identities=16%  Similarity=0.228  Sum_probs=56.7

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEecc--cceeeeccc----CccccccccceeccccccCCCCeeecCeEEEEEEEEE
Q 026533            8 QHGWEVYAVFRLFLLDQNKGNFLILQDA--MGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV   81 (237)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~--~~~~~~F~~----~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v   81 (237)
                      +.+|.+.|+|+|+|+||.+++.+.....  ....+.|..    ...+|||++||++++|.+  +|||.||+++|+|+|.|
T Consensus       145 ~l~Wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v  222 (228)
T 1flk_A          145 LLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT  222 (228)
T ss_dssp             SSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCC
T ss_pred             cCCCcEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEc
Confidence            4589999999999999987765432210  002345752    345899999999999985  79999999999999877


Q ss_pred             ee
Q 026533           82 SK   83 (237)
Q Consensus        82 ~~   83 (237)
                      .+
T Consensus       223 ~~  224 (228)
T 1flk_A          223 SD  224 (228)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=98.93  E-value=1.7e-10  Score=91.33  Aligned_cols=74  Identities=16%  Similarity=0.205  Sum_probs=56.4

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEecc--cceeeecccC----ccccccccceeccccccCCCCeeecCeEEEEEEEEE
Q 026533            8 QHGWEVYAVFRLFLLDQNKGNFLILQDA--MGAERRFHRL----KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV   81 (237)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~--~~~~~~F~~~----~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v   81 (237)
                      +.+|.+.|+|+|.|+||.+++.+.....  ....+.|...    ..+|||++||++++|.+  +|||.||+++|+|+|.|
T Consensus       109 ~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v  186 (192)
T 2gkw_A          109 LLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT  186 (192)
T ss_dssp             GSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECC
T ss_pred             cCCCcEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEc
Confidence            3579999999999999988755432210  0023667542    36899999999999986  69999999999999966


Q ss_pred             ee
Q 026533           82 SK   83 (237)
Q Consensus        82 ~~   83 (237)
                      .+
T Consensus       187 ~~  188 (192)
T 2gkw_A          187 SD  188 (192)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=93.50  E-value=0.029  Score=51.14  Aligned_cols=37  Identities=19%  Similarity=0.191  Sum_probs=31.8

Q ss_pred             cccccccceeccccccCCCCeeecCeEEEEEEEEEeecc
Q 026533           47 REWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER   85 (237)
Q Consensus        47 ~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~~   85 (237)
                      ..||++.||+++.|.  ++.||.||.+.|.+.|.=+..-
T Consensus       533 ~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~eD~~~l  569 (592)
T 4gwm_A          533 GGYGTSAFITHERLK--SRDFIKGDDVYILLTVEDISHL  569 (592)
T ss_dssp             EEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEEECGGG
T ss_pred             CCcCccccccHHHHh--hcCcccCCeEEEEEEEEeCccc
Confidence            468999999999998  5789999999999998666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	3e-20
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	3e-09
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	3e-19
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	7e-05
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	3e-18
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	3e-05
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	5e-14
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	3e-04

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (201), Expect = 3e-20
 Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 103 KHVWRIENFSKLRS---ECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALAD 156
            ++W I NFS  R    E   S  FSSG     KW +++ PKG    +  +L++YL L  
Sbjct: 6   SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 65

Query: 157 STTLTPGSKIYAEFTLRLLDQAQAR-HIAGKADFWFSASNPESGWARYVSFTYFNKPGNG 215
                  S++ A+F   +L+              +      + G+ +++   +     NG
Sbjct: 66  CPK----SEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANG 121

Query: 216 CLVKDVCLVEAEVTV 230
            L  D   +  EV+V
Sbjct: 122 LLPDDKLTLFCEVSV 136

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 3e-09
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 9   HGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFL 68
              EV A F+  +L+        ++             ++WGF +FI      D +NG L
Sbjct: 67  PKSEVRAKFKFSILNAKGEETKAMESQR---AYRFVQGKDWGFKKFIRRDFLLDEANGLL 123

Query: 69  LEDTCVFGAEVFVSKERSTGKGE 91
            +D      EV V ++     G+
Sbjct: 124 PDDKLTLFCEVSVVQDSVNISGQ 146

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.0 bits (194), Expect = 3e-19
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 20/150 (13%)

Query: 103 KHVWRIENFSKLR-------SECCDSQVFSSGDQ--KWQIQLYPKGRRHGTGTHLAVYLA 153
             +W+I +F + R            S  F +     K  +++Y  G   G GTHL+++  
Sbjct: 4   VFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 63

Query: 154 LADSTTLTPG-SKIYAEFTLRLLDQAQARHI---------AGKADFWFSASNPESGWARY 203
           +               + TL LLDQ    H+         +       +  N  SG   +
Sbjct: 64  VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 123

Query: 204 VSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 233
              +   +  N  +  D   ++A V + G+
Sbjct: 124 CPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 152

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 7e-05
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 1   MENTSSLQHGWEVYAVFRLFLLDQNKGN-----FLILQDAMGAERRFHRLKREWGFDEFI 55
           M+  +     W       L LLDQN        F     +   +R  + +    G   F 
Sbjct: 65  MKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFC 124

Query: 56  PIKAFNDASNGFLLEDTCVFGAEVFVS 82
           P+    +A N ++ +D     A V ++
Sbjct: 125 PVSKM-EAKNSYVRDDAIFIKAIVDLT 150

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 3e-18
 Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 22/153 (14%)

Query: 103 KHVWRIENFSKL-------RSECCDSQVFSSGDQ--KWQIQLYPKGRRHGTGTHLAVYLA 153
             +W+I ++ +        ++    SQ F +G    K   ++Y  G   G GTHL+++  
Sbjct: 4   VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 63

Query: 154 LADSTTLTPGS-KIYAEFTLRLLDQAQARHIAGKA----------DFWFSASNPESGWAR 202
           +               + TL L+DQ  +R   G A                 N  SG   
Sbjct: 64  IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPV 123

Query: 203 YVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN 235
           +V+ T         +  D   ++  V    + +
Sbjct: 124 FVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 154

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 8/89 (8%)

Query: 1   MENTSSLQHGWEVYAVFRLFLLDQNKGNFLIL------QDAMGAERRFHRLKREWGFDEF 54
           M         W       L L+DQ      +        ++   ++    +    G   F
Sbjct: 65  MRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVF 124

Query: 55  IPIKAFNDASNGFLLEDTCVFGAEVFVSK 83
           +        +  ++ +DT      V  S 
Sbjct: 125 VAQTVLE--NGTYIKDDTIFIKVIVDTSD 151

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 5e-14
 Identities = 19/151 (12%), Positives = 45/151 (29%), Gaps = 26/151 (17%)

Query: 103 KHVWRIENFSKLR-------SECCDSQVFSSGDQ--KWQIQLYPKGRRHG-TGTHLAVYL 152
            ++W+I NF                S  F +G    K  ++L+ +         ++++++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 153 ALADSTTLTP-GSKIYAEFTLRLLDQAQ-------------ARHIAGKADFWFSASNPES 198
                   +           L +LDQ++                +          +    
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 199 GWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 229
           G+  ++      +     +  D  LV  EV+
Sbjct: 126 GYVTFMHLEALRQ--RTFIKDDTLLVRCEVS 154

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 11/79 (13%)

Query: 10  GWEVYAVFRLFLLDQNKG----NFLILQDAMGAERRFHRLKRE-----WGFDEFIPIKAF 60
            W      RL +LDQ++     N   + DA      F R         +G+  F+ ++A 
Sbjct: 77  PWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEAL 136

Query: 61  NDASNGFLLEDTCVFGAEV 79
                 F+ +DT +   EV
Sbjct: 137 R--QRTFIKDDTLLVRCEV 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.96
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.95
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.95
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.94
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.43
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.03
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	98.92
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	98.92

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-29  Score=190.25  Aligned_cols=129  Identities=27%  Similarity=0.448  Sum_probs=109.6

Q ss_pred             CeEEEEEccccccC---CceeecccEEeCCe---EEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEE
Q 026533          102 IKHVWRIENFSKLR---SECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLL  175 (237)
Q Consensus       102 ~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~  175 (237)
                      .+|+|+|+|||.++   ++.++||.|.+||+   +|+|++||+|..++.++||||||.+.+.    ..|++.++|+|+|+
T Consensus         5 ~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~----~~~~v~~~~~~~l~   80 (146)
T d2cr2a1           5 FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSIL   80 (146)
T ss_dssp             EEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCC----SSSEEEEECEEEEE
T ss_pred             EEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCCEEEEEEEeccC----CCceEEEEEEEEEE
Confidence            47999999999886   46899999998875   7999999999988778899999999873    46999999999999


Q ss_pred             eCCCCcee-eecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEeee
Q 026533          176 DQAQARHI-AGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGIS  234 (237)
Q Consensus       176 n~~~~~~~-~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~~  234 (237)
                      ||.+.... .......+...+.+|||++||++++|.++.+|||+||+|+|+|+|+|++.+
T Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          81 NAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             CTTSCEEEEEECSCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             cCCCCcccceEecceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            99877543 222233344456889999999999999988999999999999999999753

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.4e-29  Score=190.57  Aligned_cols=130  Identities=22%  Similarity=0.343  Sum_probs=106.1

Q ss_pred             CCeEEEEEccccccC-------CceeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEEEEE
Q 026533          101 SIKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAEF  170 (237)
Q Consensus       101 ~~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~~~~  170 (237)
                      .|+|+|+|+|||.++       +..++||+|.+|  |++|+|++||+|+..+.++|+||||++.+++.. ...|++.++|
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV   81 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccccceeeEE
Confidence            579999999999884       346899999998  999999999999987778999999999876543 3479999999


Q ss_pred             EEEEEeCCCCceeeec-----ceee----cCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEE
Q 026533          171 TLRLLDQAQARHIAGK-----ADFW----FSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVH  231 (237)
Q Consensus       171 ~l~l~n~~~~~~~~~~-----~~~~----F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~  231 (237)
                      +|+|+||.++.+....     ....    +...+.+|||.+||++++|+ +++|||+||+|+|+|+|.|.
T Consensus        82 ~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~-~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          82 TLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKME-AKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCC-CSTTTSCSSCEEEEEEECCT
T ss_pred             EEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhc-ccCCcEeCCEEEEEEEEEec
Confidence            9999999877543211     1122    23345789999999999995 45799999999999999764

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-28  Score=185.25  Aligned_cols=130  Identities=21%  Similarity=0.298  Sum_probs=106.4

Q ss_pred             CCeEEEEEccccccC-------CceeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEEEEE
Q 026533          101 SIKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAEF  170 (237)
Q Consensus       101 ~~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~~~~  170 (237)
                      +|+|+|+|+|||.++       +..++||+|.+|  |++|+|++||+|+..+.++|+||||++.+++.. ...|++.++|
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV   81 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTTTTSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccCCcEEEEE
Confidence            689999999999874       357999999988  999999999999987778999999999876543 3579999999


Q ss_pred             EEEEEeCCCCcee-eec-----c----eeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEe
Q 026533          171 TLRLLDQAQARHI-AGK-----A----DFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG  232 (237)
Q Consensus       171 ~l~l~n~~~~~~~-~~~-----~----~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~  232 (237)
                      +|+|+||.+.... ...     .    .+.+...+.+|||++||++++|++  +|||+||+|+|+|+|.+.+
T Consensus        82 ~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~V~~~~  151 (155)
T d1l0aa1          82 TLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD  151 (155)
T ss_dssp             EEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHHT--TTTCBTTEEEEEEEECCSS
T ss_pred             EEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhhh--CCCEECCEEEEEEEEEeCC
Confidence            9999999876431 111     1    122334457899999999999986  7999999999999997644

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-26  Score=176.61  Aligned_cols=129  Identities=16%  Similarity=0.168  Sum_probs=104.3

Q ss_pred             CCCCeEEEEEccccccC-------CceeecccEEeC--CeEEEEEEEeCCCcCCC-CCeEEEEEEecCCCCC-CCCCeEE
Q 026533           99 APSIKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGT-GTHLAVYLALADSTTL-TPGSKIY  167 (237)
Q Consensus        99 ~~~~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~vyp~G~~~~~-~~~lslyL~~~~~~~~-~~~~~~~  167 (237)
                      ...|+|+|+|+|||.++       +..++||+|.+|  |++|+|.+||+|...+. ++|+|+||++.+++.. ..+|++.
T Consensus         2 ~~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~   81 (155)
T d1lb6a_           2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (155)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEE
Confidence            34689999999999984       357999999998  99999999999977653 5799999999876542 3589999


Q ss_pred             EEEEEEEEeCCCCcee---eec----------ceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEE
Q 026533          168 AEFTLRLLDQAQARHI---AGK----------ADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  229 (237)
Q Consensus       168 ~~~~l~l~n~~~~~~~---~~~----------~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~  229 (237)
                      ++++|.|+||.+....   ...          ....+.....+|||++||++++|++  +|||+||+|+|+|+|+
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~--~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEE
T ss_pred             EEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhcc--CCCEECCEEEEEEEEE
Confidence            9999999999876421   100          1123344557899999999999986  7999999999999996

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-13  Score=102.74  Aligned_cols=76  Identities=24%  Similarity=0.355  Sum_probs=65.8

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeecccC
Q 026533            9 HGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERST   87 (237)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~~~~   87 (237)
                      +.|.++|+|+|.|+|+.++.....+.   ..+.+.....+|||++||++++|+++.+|||+||+++|+|+|.|+++..+
T Consensus        67 ~~~~v~~~~~~~l~n~~~~~~~~~~~---~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~~~  142 (146)
T d2cr2a1          67 PKSEVRAKFKFSILNAKGEETKAMES---QRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVN  142 (146)
T ss_dssp             SSSEEEEECEEEEECTTSCEEEEEEC---SCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCSCC
T ss_pred             CCceEEEEEEEEEEcCCCCcccceEe---cceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCCCC
Confidence            57999999999999998887766555   34555566789999999999999999999999999999999999987744

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.8e-11  Score=90.30  Aligned_cols=74  Identities=23%  Similarity=0.331  Sum_probs=55.2

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEecccce-----eeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEe
Q 026533            8 QHGWEVYAVFRLFLLDQNKGNFLILQDAMGA-----ERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVS   82 (237)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~-----~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~   82 (237)
                      +..|.+.|+|+|+|+||.+++.....-....     .+.+......|||.+||++++| ++++|||.||+++|+|+|.|.
T Consensus        72 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L-~~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          72 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             GSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCC-CCSTTTSCSSCEEEEEEECCT
T ss_pred             ccccceeeEEEEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHh-cccCCcEeCCEEEEEEEEEec
Confidence            4589999999999999987764432211001     1224445678999999999998 456899999999999998764

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.4e-10  Score=86.64  Aligned_cols=72  Identities=14%  Similarity=0.176  Sum_probs=55.2

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEeccc------ceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEE
Q 026533            8 QHGWEVYAVFRLFLLDQNKGNFLILQDAM------GAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV   81 (237)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~~------~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v   81 (237)
                      ...|.+.|+|+|.|+||.++..+......      .-.+.+......|||++||++++|.  ++|||.||+++|+|+|.+
T Consensus        72 ~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~V~~  149 (155)
T d1l0aa1          72 LLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT  149 (155)
T ss_dssp             TSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHH--TTTTCBTTEEEEEEEECC
T ss_pred             ccCCcEEEEEEEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhh--hCCCEECCEEEEEEEEEe
Confidence            46799999999999999887654332210      0123344556789999999999997  489999999999999754

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.5e-10  Score=86.32  Aligned_cols=71  Identities=21%  Similarity=0.364  Sum_probs=54.3

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEecc---------cceeeecccCccccccccceeccccccCCCCeeecCeEEEEEE
Q 026533            8 QHGWEVYAVFRLFLLDQNKGNFLILQDA---------MGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAE   78 (237)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~---------~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~   78 (237)
                      +.+|.+.|+|+|.|+||.++........         ....++|.....+|||++||++++|+  ++|||.||++.|+|+
T Consensus        75 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~--~~gyl~dD~l~I~~~  152 (155)
T d1lb6a_          75 HLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCE  152 (155)
T ss_dssp             GSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEE
T ss_pred             cCCCcEEEEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhc--cCCCEECCEEEEEEE
Confidence            4689999999999999987654311110         00123556667789999999999997  489999999999999


Q ss_pred             EE
Q 026533           79 VF   80 (237)
Q Consensus        79 v~   80 (237)
                      |.
T Consensus       153 V~  154 (155)
T d1lb6a_         153 VS  154 (155)
T ss_dssp             EE
T ss_pred             EE
Confidence            85