Citrus Sinensis ID: 026538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYLCG
Secondary Structure (PSIPRED)
ccccccccHHHHHHcccccHHHHHHHHHHccccccHHHHHHcccccccccccccccccccHHHHHHHHccccccEEEEEEcccccccccccccEEEEEccccccHHHHHHHHHcccccEEcccccccccEEEEEEEcccEEEEEccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEccccEEEEccccHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccHHHHHHccccccccEEEEEcccHHHcccccccEEEEEccccccHHHHHHHHHccHccccccccccccEEEEEEEEcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
meknvemsknaqfraiqpspsilsfvednllgrrrpielrragynielsapldnipfstsseRERIEENIFRNKLEFFAAAkvsssfpapdlpeiafagrsnvgksSMLNALTRQwgvvrtsdkpgltqtINFFKLGTKlclvdlpgygfaYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIdtkwgvkprdHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYLCG
Flexible Loop (DISEMBL)
MEKNVemsknaqfraiqpspsilsfvednllGRRRPIELRragynielsapldnipfstsSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYvstrvslkrvcllidtkwgvkprdhELISlmersqtkyQVVLTKTDTVFPIDVARRAMQIEEVIFYLCG
Low Complexity Region (SEG)
MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPfstssererieenifrnKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYLCG
Disordered region (IsUnstruct)
*********************ILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNI************ENIFRNKLEFFAAAKVS*******LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYLC*
Disordered Region (DISOPRED)
****************QPS*SILSFVEDNLL******************APL*N***********IEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYLCG
Disordered Region (DISEMBL)
**********AQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYLCG
Disordered Region (DISPRO)
***NVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYLCG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYLCG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q2GAU7	217	Probable GTP-binding prot	yes	no	0.679	0.741	0.466	7e-38
Q1GJX8	216	Probable GTP-binding prot	yes	no	0.776	0.851	0.433	5e-36
Q16AA3	216	Probable GTP-binding prot	yes	no	0.708	0.777	0.456	1e-35
Q5FPX9	227	Probable GTP-binding prot	yes	no	0.675	0.704	0.425	2e-34
Q3IYY4	217	Probable GTP-binding prot	yes	no	0.687	0.751	0.439	9e-34
Q5LW13	217	Probable GTP-binding prot	yes	no	0.687	0.751	0.451	9e-34
Q9ZG89	199	GTP-binding protein EngB	yes	no	0.683	0.814	0.425	3e-33
B8H1E7	199	Probable GTP-binding prot	yes	no	0.683	0.814	0.425	3e-33
Q98D85	212	Probable GTP-binding prot	yes	no	0.691	0.773	0.448	5e-33
Q1GN74	219	Probable GTP-binding prot	yes	no	0.696	0.753	0.414	1e-32

>sp|Q2GAU7|ENGB_NOVAD Probable GTP-binding protein EngB OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=engB PE=3 SV=1

 Score =  157 bits (396), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 113/165 (68%), Gaps = 4/165 (2%)

Query: 56  PFSTSSERERIEEN--IFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALT 113
           P   ++ +E IE+   +F  ++EF  +A      P PD+PEIAFAGRSNVGKSS+LNALT
Sbjct: 3   PEEQAAHQELIEQARLLFAGRVEFLKSAPALKFLPDPDVPEIAFAGRSNVGKSSLLNALT 62

Query: 114 RQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171
            +  + RTS  PG TQ +N+F++G  T+L LVD+PGYGFA A  +V + W  LV++++  
Sbjct: 63  GRKSLARTSVTPGRTQELNYFEVGEPTRLRLVDMPGYGFAKAPPKVVETWRRLVRDFLRG 122

Query: 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216
           RV LKR  LLID++ GVKP D +++ +++ +   Y++VLTK D +
Sbjct: 123 RVVLKRTLLLIDSRHGVKPVDDDMMQMLDEAGVGYRIVLTKADKI 167

Necessary for normal cell division and for the maintenance of normal septation.
Novosphingobium aromaticivorans (strain DSM 12444) (taxid: 279238)

>sp|Q1GJX8|ENGB_RUEST Probable GTP-binding protein EngB OS=Ruegeria sp. (strain TM1040) GN=engB PE=3 SV=1

 Score =  151 bits (381), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 113/187 (60%), Gaps = 3/187 (1%)

Query: 46  IELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGK 105
           ++L  PL   P + + E  R    +F  + EF       S  P  D  E+ FAGRSNVGK
Sbjct: 1   MQLPFPLAEEPDAAAMETGR---KLFAGQSEFLKGVVAMSGLPPADRIEVCFAGRSNVGK 57

Query: 106 SSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
           SS++NALT   G+ R S+ PG TQ INFF  G +L LVDLPGYG+A A   V + W+ L+
Sbjct: 58  SSLINALTGTKGLARASNTPGRTQEINFFTQGPELYLVDLPGYGYANAPLAVVEKWQRLL 117

Query: 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA 225
           K+Y+S R +L+R  +LIDT+ GVK  D E++ L++ S   +QVV+TK D V   D A+  
Sbjct: 118 KQYLSGRQTLRRAFVLIDTRHGVKKVDEEIMKLLDTSAVTFQVVMTKADKVKEKDRAKIL 177

Query: 226 MQIEEVI 232
            Q+ + +
Sbjct: 178 DQVRDAL 184

Necessary for normal cell division and for the maintenance of normal septation.

Silicibacter sp. (strain TM1040) (taxid: 292414)

>sp|Q16AA3|ENGB_ROSDO Probable GTP-binding protein EngB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=engB PE=3 SV=1

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 106/171 (61%), Gaps = 3/171 (1%)

Query: 46  IELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGK 105
           ++L  P+   P   S E+ R+   +F    EF       S  P PD  E+ FAGRSNVGK
Sbjct: 1   MQLPFPVAQDPDQHSLEKGRL---LFAGDTEFVKGVVAMSGLPDPDRLEVCFAGRSNVGK 57

Query: 106 SSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
           SS++NALT + G+ R S+ PG TQ INFF  G    LVDLPGYG+A A   V + W+ L+
Sbjct: 58  SSLINALTGRKGLARASNTPGRTQEINFFTAGESHYLVDLPGYGYANAPVPVVEKWQRLL 117

Query: 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216
           K+Y+S R +L+R  +LID + GVK  D E++SL++ +   +QVVLTK D V
Sbjct: 118 KQYLSGRQTLRRAFVLIDARHGVKKVDEEILSLLDSAAVTFQVVLTKADKV 168

Necessary for normal cell division and for the maintenance of normal septation.

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (taxid: 375451)

>sp|Q5FPX9|ENGB_GLUOX Probable GTP-binding protein EngB OS=Gluconobacter oxydans (strain 621H) GN=engB PE=3 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 106/160 (66%)

Query: 70  IFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
           +F  + EFF  ++     P    PE+AFAGRSNVGKSS++NALT +  + R S +PG T+
Sbjct: 20  LFAGECEFFFGSQKIDQLPPVGRPEVAFAGRSNVGKSSIINALTGRRALARASSEPGRTK 79

Query: 130 TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK 189
            +NFF L  +L LVD+PGYGFA A + VK+ W++++  Y+  R +L+RV LL+D +  +K
Sbjct: 80  QLNFFNLADRLSLVDMPGYGFAKAAKSVKEDWQDMMFAYLRGRTTLERVILLLDARIELK 139

Query: 190 PRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229
             D +++ L++R+   +Q+VLTK D V P  +A +  ++E
Sbjct: 140 ASDKDVMELLDRAAVVFQIVLTKCDQVKPKALAAKIAEVE 179

Necessary for normal cell division and for the maintenance of normal septation.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

>sp|Q3IYY4|ENGB_RHOS4 Probable GTP-binding protein EngB OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=engB PE=3 SV=1

 Score =  143 bits (361), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 102/166 (61%), Gaps = 3/166 (1%)

Query: 51  PLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLN 110
           PL   P   S E  R+   +F    +F        + P  D  E+ FAGRSNVGKSS++N
Sbjct: 7   PLSPEPDEASREAGRL---LFAGPCDFVKGVTTMEALPPADRIEVCFAGRSNVGKSSLIN 63

Query: 111 ALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170
           ALT +  + R S+ PG TQ IN+F LG    LVDLPGYG+A A + +   W+ L+K Y++
Sbjct: 64  ALTGRKALARASNTPGRTQEINYFALGPSRYLVDLPGYGYAEAPKPIVQRWQRLLKGYLA 123

Query: 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216
            R +L+R  +LIDT+ GVK  D E+++L++RS   +QVV+TK D V
Sbjct: 124 GRQTLRRAFVLIDTRHGVKSVDEEILTLLDRSAVTFQVVMTKADKV 169

Necessary for normal cell division and for the maintenance of normal septation.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|Q5LW13|ENGB_RUEPO Probable GTP-binding protein EngB OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=engB PE=3 SV=1

 Score =  143 bits (361), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 103/166 (62%), Gaps = 3/166 (1%)

Query: 51  PLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLN 110
           P+   P + ++E  R    +F    EF       S  P  D  E+ FAGRSNVGKSS++N
Sbjct: 7   PVAEEPDAFTAETGR---KLFAGPSEFVKGVVAMSGLPPADRVEVCFAGRSNVGKSSLIN 63

Query: 111 ALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170
           ALT   G+ R S+ PG TQ INFF  G +L LVDLPGYG+A A  +V + W++L+K+Y+S
Sbjct: 64  ALTGTKGLARASNTPGRTQEINFFTQGPELYLVDLPGYGYANAPLKVVEKWQKLLKQYLS 123

Query: 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216
            R +L+R  +LID + GVK  D E++ L++ S   +Q VLTK D V
Sbjct: 124 GRQTLRRAFVLIDARHGVKAVDDEIMKLLDTSAVTFQCVLTKADKV 169

Necessary for normal cell division and for the maintenance of normal septation.

Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200)

>sp|Q9ZG89|ENGB_CAUCR GTP-binding protein EngB OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=engB PE=3 SV=2

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 100/162 (61%)

Query: 71  FRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 130
           F   + F   A    + P  DLPE+AFAGRSNVGKSS++N L  Q  + R S++PG T+ 
Sbjct: 3   FAQPVSFIMGAVRMDAMPPSDLPEVAFAGRSNVGKSSLINGLVNQKYLARASNEPGRTRE 62

Query: 131 INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP 190
           INFF L  K+ LVDLPGYGFA     + D +++L + Y+  R +LKRV +LID + G+K 
Sbjct: 63  INFFLLAEKVRLVDLPGYGFARVSRSIADKFQDLGRAYLRGRANLKRVYVLIDARHGLKK 122

Query: 191 RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
            D E +  ++ +   YQ+VLTK D + P +V +   + ++ I
Sbjct: 123 VDLEALDALDVAAVSYQIVLTKADKIKPAEVDKVVAETQKAI 164

Necessary for normal cell division and for the maintenance of normal septation.

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

>sp|B8H1E7|ENGB_CAUCN Probable GTP-binding protein EngB OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=engB PE=3 SV=1

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 100/162 (61%)

Query: 71  FRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 130
           F   + F   A    + P  DLPE+AFAGRSNVGKSS++N L  Q  + R S++PG T+ 
Sbjct: 3   FAQPVSFIMGAVRMDAMPPSDLPEVAFAGRSNVGKSSLINGLVNQKYLARASNEPGRTRE 62

Query: 131 INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP 190
           INFF L  K+ LVDLPGYGFA     + D +++L + Y+  R +LKRV +LID + G+K 
Sbjct: 63  INFFLLAEKVRLVDLPGYGFARVSRSIADKFQDLGRAYLRGRANLKRVYVLIDARHGLKK 122

Query: 191 RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
            D E +  ++ +   YQ+VLTK D + P +V +   + ++ I
Sbjct: 123 VDLEALDALDVAAVSYQIVLTKADKIKPAEVDKVVAETQKAI 164

Necessary for normal cell division and for the maintenance of normal septation.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

>sp|Q98D85|ENGB_RHILO Probable GTP-binding protein EngB OS=Rhizobium loti (strain MAFF303099) GN=engB PE=3 SV=1

 Score =  141 bits (355), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 106/176 (60%), Gaps = 12/176 (6%)

Query: 66  IEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP 125
           I  ++F     F          P    PEIAFAGRSNVGKSS++NAL  Q G+ RTS+ P
Sbjct: 2   ITTDLFTRGWIFIRGVPAMKFLPPEGPPEIAFAGRSNVGKSSLINALVNQKGLARTSNTP 61

Query: 126 GLTQTINFF------KLGTKL---CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLK 176
           G TQ +N+F        G  L    LVD+PGYG+A A +E  D W +LV +Y+  RV+LK
Sbjct: 62  GRTQELNYFVPDGFSGEGADLPPMALVDMPGYGYATAPKEKVDEWTKLVFDYLKGRVTLK 121

Query: 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
           RV +LID + G+K +D E++SL++++   YQ+VLTKTD    I VA     IEE +
Sbjct: 122 RVYVLIDARHGIKAKDDEVLSLLDKAAVSYQIVLTKTDK---IKVAGVPRLIEETL 174

Necessary for normal cell division and for the maintenance of normal septation.

Rhizobium loti (strain MAFF303099) (taxid: 266835)

>sp|Q1GN74|ENGB_SPHAL Probable GTP-binding protein EngB OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=engB PE=3 SV=1

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 103/169 (60%), Gaps = 4/169 (2%)

Query: 52  LDNIPFSTSSERERIEE--NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSML 109
           +  I     ++ ER E    +F   + F  +A      P P +PEIAFAGRSNVGKSS+L
Sbjct: 1   MSEIELEPGADPERAERARKLFSGPIAFLKSAPALQHLPVPSVPEIAFAGRSNVGKSSLL 60

Query: 110 NALTRQWGVVRTSDKPGLTQTINFFKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELVKE 167
           NALT + G+ RTS  PG TQ +N+F +G      LVD+PGYGFA A ++V   W  L+ +
Sbjct: 61  NALTNRNGLARTSVTPGRTQELNYFDVGEPPVFRLVDMPGYGFAKAPKDVVRKWRFLIND 120

Query: 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216
           Y+  R  LKR  +LID++ G+K  D +++ +++ +   Y++VLTK D +
Sbjct: 121 YLRGRQVLKRTLVLIDSRHGIKDVDRDVLEMLDTAAVSYRLVLTKADKI 169

Necessary for normal cell division and for the maintenance of normal septation.

Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (taxid: 317655)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
255553339	489	GTP binding protein, putative [Ricinus c	0.953	0.462	0.920	1e-120
356569473	540	PREDICTED: uncharacterized protein LOC10	0.957	0.420	0.894	1e-118
356537641	535	PREDICTED: uncharacterized protein LOC10	0.957	0.424	0.885	1e-117
224145468	305	predicted protein [Populus trichocarpa]	0.974	0.757	0.866	1e-114
343172533	343	putative GTP-binding protein, partial [S	0.962	0.664	0.859	1e-113
343172535	343	putative GTP-binding protein, partial [S	0.962	0.664	0.855	1e-113
42573726	465	putative GTP-binding protein CGPA [Arabi	0.962	0.490	0.859	1e-112
18424095	446	putative GTP-binding protein CGPA [Arabi	0.962	0.511	0.859	1e-112
297793371	467	predicted protein [Arabidopsis lyrata su	0.962	0.488	0.850	1e-112
449439155	535	PREDICTED: uncharacterized protein LOC10	0.949	0.420	0.875	1e-108

>gi|255553339|ref|XP_002517711.1| GTP binding protein, putative [Ricinus communis] gi|223543109|gb|EEF44643.1| GTP binding protein, putative [Ricinus communis]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/226 (92%), Positives = 216/226 (95%)

Query: 7   MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI 66
           MSKNAQFRAI+PSPSILSFVEDNLLGRRR IEL+RAGYNIELSAPLDNIP STSSERERI
Sbjct: 213 MSKNAQFRAIKPSPSILSFVEDNLLGRRRLIELKRAGYNIELSAPLDNIPLSTSSERERI 272

Query: 67  EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
           EENIFRNKL FFAAAKVSSSFP PDLPEIAFAGRSNVGKSS+LNALTRQWGV RTSDKPG
Sbjct: 273 EENIFRNKLTFFAAAKVSSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVARTSDKPG 332

Query: 127 LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186
           LTQTINFF LG KLCLVDLPGYGFAYAKEEVKDAWE+LVKEYVSTRV LKRVCLLIDTKW
Sbjct: 333 LTQTINFFSLGPKLCLVDLPGYGFAYAKEEVKDAWEDLVKEYVSTRVGLKRVCLLIDTKW 392

Query: 187 GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
           G+KPRDHELI+LMERSQTKYQ+VLTKTD VFPIDVARRAMQIEE +
Sbjct: 393 GMKPRDHELINLMERSQTKYQIVLTKTDVVFPIDVARRAMQIEESL 438

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569473|ref|XP_003552925.1| PREDICTED: uncharacterized protein LOC100799694 [Glycine max]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/227 (89%), Positives = 217/227 (95%)

Query: 7   MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI 66
           MSKNAQFRAIQPSP ILSFVE NLLGRRR I+L+RAGYNI+LSAPLDNIPFS+SSERE+I
Sbjct: 277 MSKNAQFRAIQPSPLILSFVEKNLLGRRRMIDLKRAGYNIDLSAPLDNIPFSSSSEREKI 336

Query: 67  EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
           EENIFRNKLEFFAAAKVSSSFP P+LPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPG
Sbjct: 337 EENIFRNKLEFFAAAKVSSSFPTPNLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPG 396

Query: 127 LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186
           LTQTINFF+LGTK CLVDLPGYGFAYAKEEVK++WEELVKEYVSTRV LKRVCLLIDTKW
Sbjct: 397 LTQTINFFQLGTKHCLVDLPGYGFAYAKEEVKESWEELVKEYVSTRVGLKRVCLLIDTKW 456

Query: 187 GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233
           G+KPRD ELI LMERS+TKYQ+VLTKTD VFPIDVARRAMQIEE +F
Sbjct: 457 GMKPRDLELIELMERSKTKYQIVLTKTDMVFPIDVARRAMQIEENLF 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537641|ref|XP_003537334.1| PREDICTED: uncharacterized protein LOC100801850 [Glycine max]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/227 (88%), Positives = 216/227 (95%)

Query: 7   MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI 66
           MSKNAQFRAIQPSP ILSFVE NLLGRRR I+L+RAGYNI+LSAPLDNIPFS+SSERE+I
Sbjct: 272 MSKNAQFRAIQPSPLILSFVEKNLLGRRRMIDLKRAGYNIDLSAPLDNIPFSSSSEREKI 331

Query: 67  EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
           EENIFRNKL+FFAAAKVSSSFP P+LPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPG
Sbjct: 332 EENIFRNKLDFFAAAKVSSSFPPPNLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPG 391

Query: 127 LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186
           LTQTINFF LGTK CLVDLPGYGFAYAKEEVK++WEELVKEYVSTRV L+RVCLLIDTKW
Sbjct: 392 LTQTINFFNLGTKHCLVDLPGYGFAYAKEEVKESWEELVKEYVSTRVGLRRVCLLIDTKW 451

Query: 187 GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233
           G+KPRD ELI LMERS+TKYQ+VLTKTD VFPIDVARRAMQIEE +F
Sbjct: 452 GMKPRDLELIELMERSKTKYQIVLTKTDVVFPIDVARRAMQIEESLF 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145468|ref|XP_002325653.1| predicted protein [Populus trichocarpa] gi|222862528|gb|EEF00035.1| predicted protein [Populus trichocarpa]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/232 (86%), Positives = 214/232 (92%), Gaps = 1/232 (0%)

Query: 1   MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTS 60
           +EK+  MS NAQFRAIQPSPSILSFVEDN LGRRR IEL+RAGYN +LSAPLDNIPFSTS
Sbjct: 38  LEKDAGMSMNAQFRAIQPSPSILSFVEDNFLGRRRSIELKRAGYNTDLSAPLDNIPFSTS 97

Query: 61  SERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVR 120
           SERERIEENIFRNKL FFAAAKVSSSFP P LPEIAFAGRSNVGKSS+LN+LTRQWGV R
Sbjct: 98  SERERIEENIFRNKLTFFAAAKVSSSFPPPGLPEIAFAGRSNVGKSSLLNSLTRQWGVAR 157

Query: 121 TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL 180
           TSDKPGLTQTINFF+LG  +CLVDLPGYGFAYAKEEVKD+WEELVKEYVS RV+LKRVCL
Sbjct: 158 TSDKPGLTQTINFFELGN-VCLVDLPGYGFAYAKEEVKDSWEELVKEYVSMRVNLKRVCL 216

Query: 181 LIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
           LIDTKWG+KPRD ELI LMER QTKYQVV+TKTD VFPIDVARRAMQIEE +
Sbjct: 217 LIDTKWGMKPRDRELIDLMERYQTKYQVVMTKTDLVFPIDVARRAMQIEESL 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172533|gb|AEL98970.1| putative GTP-binding protein, partial [Silene latifolia]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/228 (85%), Positives = 214/228 (93%)

Query: 5   VEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERE 64
           VEMS NAQF+AI+PS SIL+FV++N LGRRR IELRRAGYN+ELSAPLDN+PFS SSERE
Sbjct: 80  VEMSMNAQFKAIKPSHSILTFVQENFLGRRRDIELRRAGYNVELSAPLDNLPFSASSERE 139

Query: 65  RIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK 124
           R+EE++FRNKLEFFAAA+VSSSFP PDLPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDK
Sbjct: 140 RVEESVFRNKLEFFAAARVSSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDK 199

Query: 125 PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 184
           PG TQ+INFF LG+KL LVDLPGYGFAYAK+EVK+AWEELVKEYVSTRV LKRVCLLIDT
Sbjct: 200 PGHTQSINFFNLGSKLNLVDLPGYGFAYAKDEVKEAWEELVKEYVSTRVGLKRVCLLIDT 259

Query: 185 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
           KWG+KPRD ELI LMERSQTKYQVVLTKTD VFPIDVARRAMQIEE +
Sbjct: 260 KWGMKPRDIELIHLMERSQTKYQVVLTKTDVVFPIDVARRAMQIEETL 307

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172535|gb|AEL98971.1| putative GTP-binding protein, partial [Silene latifolia]

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/228 (85%), Positives = 214/228 (93%)

Query: 5   VEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERE 64
           VEMS NAQF+AI+PS SIL+FV++N LGRRR IELRRAGYN+ELSAPLDN+PFS SSERE
Sbjct: 80  VEMSMNAQFKAIKPSHSILTFVQENFLGRRRDIELRRAGYNVELSAPLDNLPFSASSERE 139

Query: 65  RIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK 124
           R+EE++FRNKLEFFAAA+VSSSFP PDLPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDK
Sbjct: 140 RVEESVFRNKLEFFAAARVSSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDK 199

Query: 125 PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 184
           PG TQ+INFF LG+KL LVDLPGYGFAYAK+EVK+AWEELVKEY+STRV LKRVCLLIDT
Sbjct: 200 PGHTQSINFFNLGSKLNLVDLPGYGFAYAKDEVKEAWEELVKEYLSTRVGLKRVCLLIDT 259

Query: 185 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
           KWG+KPRD ELI LMERSQTKYQVVLTKTD VFPIDVARRAMQIEE +
Sbjct: 260 KWGMKPRDIELIHLMERSQTKYQVVLTKTDVVFPIDVARRAMQIEETL 307

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573726|ref|NP_974959.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|222423373|dbj|BAH19659.1| AT5G58370 [Arabidopsis thaliana] gi|332009661|gb|AED97044.1| putative GTP-binding protein CGPA [Arabidopsis thaliana]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/228 (85%), Positives = 214/228 (93%)

Query: 3   KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSE 62
           K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL+RAGYN EL APLDNIP STS+E
Sbjct: 199 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKRAGYNTELPAPLDNIPQSTSTE 258

Query: 63  RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
           RERIEE++FRNKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct: 259 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 318

Query: 123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 182
           DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+
Sbjct: 319 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 378

Query: 183 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230
           DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFPIDVARRAMQIEE
Sbjct: 379 DTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQIEE 426

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424095|ref|NP_568876.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|14334980|gb|AAK59667.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|17104637|gb|AAL34207.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|332009660|gb|AED97043.1| putative GTP-binding protein CGPA [Arabidopsis thaliana]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/228 (85%), Positives = 214/228 (93%)

Query: 3   KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSE 62
           K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL+RAGYN EL APLDNIP STS+E
Sbjct: 199 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKRAGYNTELPAPLDNIPQSTSTE 258

Query: 63  RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
           RERIEE++FRNKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct: 259 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 318

Query: 123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 182
           DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+
Sbjct: 319 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 378

Query: 183 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230
           DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFPIDVARRAMQIEE
Sbjct: 379 DTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQIEE 426

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793371|ref|XP_002864570.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310405|gb|EFH40829.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/228 (85%), Positives = 214/228 (93%)

Query: 3   KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSE 62
           K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL++AGYN EL APLDNIP STS+E
Sbjct: 201 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKKAGYNTELPAPLDNIPQSTSTE 260

Query: 63  RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
           RERIEE++FRNKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct: 261 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 320

Query: 123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 182
           DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+
Sbjct: 321 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 380

Query: 183 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230
           DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFP+DVARRAMQIEE
Sbjct: 381 DTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPMDVARRAMQIEE 428

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439155|ref|XP_004137353.1| PREDICTED: uncharacterized protein LOC101223165 [Cucumis sativus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/225 (87%), Positives = 212/225 (94%)

Query: 6   EMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERER 65
           +MSKNA+FRAIQPS SI+SFVE+NLLGRRR IE+ RAGYN +L++PLDNIPFS S ERER
Sbjct: 272 KMSKNAEFRAIQPSKSIISFVEENLLGRRRMIEIERAGYNTDLTSPLDNIPFSKSEERER 331

Query: 66  IEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP 125
           IEENIFRNKL FFAAAKVSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKP
Sbjct: 332 IEENIFRNKLTFFAAAKVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKP 391

Query: 126 GLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185
           GLTQTINFF LG+KL LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV L+RVCLL+DTK
Sbjct: 392 GLTQTINFFNLGSKLSLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVGLRRVCLLVDTK 451

Query: 186 WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230
           WG+KPRD ELI LMERSQTKYQVVLTKTDTVFP+DVARRAMQIEE
Sbjct: 452 WGMKPRDQELIDLMERSQTKYQVVLTKTDTVFPMDVARRAMQIEE 496

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2161243	465	AT5G58370 [Arabidopsis thalian	0.962	0.490	0.802	2.1e-93
DICTYBASE|DDB_G0348940	743	DDB_G0348940 [Dictyostelium di	0.632	0.201	0.476	2.6e-33
UNIPROTKB|Q5LW13	217	engB "Probable GTP-binding pro	0.594	0.649	0.496	3.3e-31
TIGR_CMR|SPO_0530	217	SPO_0530 "GTP-binding protein"	0.594	0.649	0.496	3.3e-31
GENEDB_PFALCIPARUM|PF14_0400	1000	PF14_0400 "hypothetical protei	0.670	0.159	0.403	1.8e-26
UNIPROTKB|Q8IL49	1000	PF14_0400 "GTP binding protein	0.670	0.159	0.403	1.8e-26
TAIR|locus:2144271	318	AT5G11480 [Arabidopsis thalian	0.535	0.399	0.480	1.8e-25
UNIPROTKB|Q748I9	206	engB "Probable GTP-binding pro	0.662	0.762	0.407	2.9e-25
TIGR_CMR|GSU_3013	206	GSU_3013 "GTP-binding protein"	0.662	0.762	0.407	2.9e-25
UNIPROTKB|Q2GKS7	193	engB "Probable GTP-binding pro	0.582	0.715	0.420	4.6e-25

TAIR|locus:2161243 AT5G58370 [Arabidopsis thaliana (taxid:3702)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 183/228 (80%), Positives = 198/228 (86%)

Query:     3 KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPXXXXXX 62
             K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL+RAGYN EL APLDNIP      
Sbjct:   199 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKRAGYNTELPAPLDNIPQSTSTE 258

Query:    63 XXXXXXXXXXXKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
                        KLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct:   259 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 318

Query:   123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 182
             DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+
Sbjct:   319 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 378

Query:   183 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230
             DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFPIDVARRAMQIEE
Sbjct:   379 DTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQIEE 426

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

DICTYBASE|DDB_G0348940 DDB_G0348940 [Dictyostelium discoideum (taxid:44689)]

 Score = 371 (135.7 bits), Expect = 2.6e-33, P = 2.6e-33
 Identities = 72/151 (47%), Positives = 106/151 (70%)

Query:    74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
             K++F  AAK   SF    LPE+AF GRSNVGKSS++NALT++ G+ +TSDKPG TQ+IN+
Sbjct:   257 KMKFIGAAKNIDSFLPETLPEVAFIGRSNVGKSSLINALTQR-GLAKTSDKPGQTQSINW 315

Query:   134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 193
             F+LG+ L LVDLPGYGFA+AKE + + W ++   Y++ R  +  V +LID++ G+K  D 
Sbjct:   316 FELGSTLYLVDLPGYGFAFAKETLVEQWSDITIHYLTERKCISCVFILIDSRHGLKDSDR 375

Query:   194 ELISLMERSQTKYQVVLTKTDTVFPIDVARR 224
              L+  +++ + K  ++LTK D   P D+ +R
Sbjct:   376 NLLLELDKKKIKTHIILTKADLTKPEDLVKR 406

GO:0005525 "GTP binding" evidence=IEA

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5LW13 engB "Probable GTP-binding protein EngB" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 70/141 (49%), Positives = 93/141 (65%)

Query:    76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
             EF       S  P  D  E+ FAGRSNVGKSS++NALT   G+ R S+ PG TQ INFF 
Sbjct:    29 EFVKGVVAMSGLPPADRVEVCFAGRSNVGKSSLINALTGTKGLARASNTPGRTQEINFFT 88

Query:   136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
              G +L LVDLPGYG+A A  +V + W++L+K+Y+S R +L+R  +LID + GVK  D E+
Sbjct:    89 QGPELYLVDLPGYGYANAPLKVVEKWQKLLKQYLSGRQTLRRAFVLIDARHGVKAVDDEI 148

Query:   196 ISLMERSQTKYQVVLTKTDTV 216
             + L++ S   +Q VLTK D V
Sbjct:   149 MKLLDTSAVTFQCVLTKADKV 169

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0530 SPO_0530 "GTP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 70/141 (49%), Positives = 93/141 (65%)

Query:    76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
             EF       S  P  D  E+ FAGRSNVGKSS++NALT   G+ R S+ PG TQ INFF 
Sbjct:    29 EFVKGVVAMSGLPPADRVEVCFAGRSNVGKSSLINALTGTKGLARASNTPGRTQEINFFT 88

Query:   136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
              G +L LVDLPGYG+A A  +V + W++L+K+Y+S R +L+R  +LID + GVK  D E+
Sbjct:    89 QGPELYLVDLPGYGYANAPLKVVEKWQKLLKQYLSGRQTLRRAFVLIDARHGVKAVDDEI 148

Query:   196 ISLMERSQTKYQVVLTKTDTV 216
             + L++ S   +Q VLTK D V
Sbjct:   149 MKLLDTSAVTFQCVLTKADKV 169

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GENEDB_PFALCIPARUM|PF14_0400 PF14_0400 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 310 (114.2 bits), Expect = 1.8e-26, P = 1.8e-26
 Identities = 65/161 (40%), Positives = 96/161 (59%)

Query:    74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
             ++  +  A   +  P P  PEIAF GRSN GKS+++N L  +    + S  PG T+ I+F
Sbjct:    95 RMVLYKTAIQVNELPLPKYPEIAFIGRSNCGKSTLINELCGRTNKAKVSKIPGCTKEIHF 154

Query:   134 FKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR 191
             +K+G    +CLVDLPGYG+A  KEE++  W E    Y+  R +LK+V +LID + G+K  
Sbjct:   155 YKIGKPCLMCLVDLPGYGYAECKEELRLQWNEFTLFYLKNRKNLKKVFVLIDCRVGLKTS 214

Query:   192 DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
             D EL+   +R   KYQ+VL+K D +   D+A +   I + I
Sbjct:   215 DKELLHFFDRYNIKYQIVLSKCDLLNTKDLAIKIQIINQDI 255

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IL49 PF14_0400 "GTP binding protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 310 (114.2 bits), Expect = 1.8e-26, P = 1.8e-26
 Identities = 65/161 (40%), Positives = 96/161 (59%)

Query:    74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
             ++  +  A   +  P P  PEIAF GRSN GKS+++N L  +    + S  PG T+ I+F
Sbjct:    95 RMVLYKTAIQVNELPLPKYPEIAFIGRSNCGKSTLINELCGRTNKAKVSKIPGCTKEIHF 154

Query:   134 FKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR 191
             +K+G    +CLVDLPGYG+A  KEE++  W E    Y+  R +LK+V +LID + G+K  
Sbjct:   155 YKIGKPCLMCLVDLPGYGYAECKEELRLQWNEFTLFYLKNRKNLKKVFVLIDCRVGLKTS 214

Query:   192 DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
             D EL+   +R   KYQ+VL+K D +   D+A +   I + I
Sbjct:   215 DKELLHFFDRYNIKYQIVLSKCDLLNTKDLAIKIQIINQDI 255

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2144271 AT5G11480 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 61/127 (48%), Positives = 78/127 (61%)

Query:    88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
             PA  LPE A  GRSNVGKSS+LN+L R+  +  TS KPG TQ IN F++  K  LVDLPG
Sbjct:   131 PADGLPEFALVGRSNVGKSSLLNSLVRRKRLALTSKKPGKTQCINHFRINDKWYLVDLPG 190

Query:   148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ 207
             YG+A A  E+K  W +  K+Y   R +L  V LL+D    VKP D E  S + ++Q    
Sbjct:   191 YGYASAPHELKQDWNKFTKDYFLNRSTLVSVFLLVDASIPVKPIDLEYASWLGQNQVPMT 250

Query:   208 VVLTKTD 214
             ++ TK D
Sbjct:   251 LIFTKCD 257

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

UNIPROTKB|Q748I9 engB "Probable GTP-binding protein EngB" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 64/157 (40%), Positives = 87/157 (55%)

Query:    76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
             EF  +      +P  DL EIAF GRSNVGKSS++N L  +  +VRTS  PG TQ INFF+
Sbjct:     8 EFVTSGTRPEHYPPGDLLEIAFVGRSNVGKSSLINVLVNRKSLVRTSSTPGRTQLINFFR 67

Query:   136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
             +   L LVDLPGYGFA    EVK  W  +V+ Y++ R  L  V L++D +      D  +
Sbjct:    68 VNGSLMLVDLPGYGFARVPPEVKRQWGPMVETYLAGRSCLACVVLIVDVRRTPAEEDRLM 127

Query:   196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
             +  +        VV+TK D V   + A++A  I   +
Sbjct:   128 LQWLRAYDIPVLVVITKCDKVSKNERAKQASLISRTL 164

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_3013 GSU_3013 "GTP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 64/157 (40%), Positives = 87/157 (55%)

Query:    76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
             EF  +      +P  DL EIAF GRSNVGKSS++N L  +  +VRTS  PG TQ INFF+
Sbjct:     8 EFVTSGTRPEHYPPGDLLEIAFVGRSNVGKSSLINVLVNRKSLVRTSSTPGRTQLINFFR 67

Query:   136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
             +   L LVDLPGYGFA    EVK  W  +V+ Y++ R  L  V L++D +      D  +
Sbjct:    68 VNGSLMLVDLPGYGFARVPPEVKRQWGPMVETYLAGRSCLACVVLIVDVRRTPAEEDRLM 127

Query:   196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
             +  +        VV+TK D V   + A++A  I   +
Sbjct:   128 LQWLRAYDIPVLVVITKCDKVSKNERAKQASLISRTL 164

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GKS7 engB "Probable GTP-binding protein EngB" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 58/138 (42%), Positives = 88/138 (63%)

Query:    77 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
             F A  +   SFP   +PE+AFAGRSNVGKSS++NA+T      +TS  PG T+ INF+  
Sbjct:     6 FVAGVQDRKSFPDFGVPEVAFAGRSNVGKSSLINAITNNKKNAKTSSNPGSTRQINFYLN 65

Query:   137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
                + LVDLPGYG++ A +E    + ++++ Y+ +R +L+R+ LLID++ G+K  D + +
Sbjct:    66 KGIVALVDLPGYGYSKASKEATRGYLDVMEHYLMSREALQRLVLLIDSRIGLKEIDRDFL 125

Query:   197 SLMERSQTKYQVVLTKTD 214
               +E     Y +VLTK D
Sbjct:   126 CWLEEHGIYYSIVLTKAD 143

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023958001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (573 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
PRK00454	196	PRK00454, engB, GTP-binding protein YsxC; Reviewed	1e-59
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	4e-58
TIGR03598	178	TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi	4e-56
COG0218	200	COG0218, COG0218, Predicted GTPase [General functi	2e-54
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	8e-22
PRK04213	201	PRK04213, PRK04213, GTP-binding protein; Provision	2e-15
cd00880	161	cd00880, Era_like, E	3e-11
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-10
cd11383	140	cd11383, YfjP, YfjP GTPase	2e-09
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	1e-08
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	2e-08
cd04163	168	cd04163, Era, E	4e-08
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	5e-08
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	6e-08
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	2e-07
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	2e-07
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	4e-07
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-07
cd01895	174	cd01895, EngA2, EngA2 GTPase contains the second d	5e-07
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	5e-07
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	2e-06
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	2e-06
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	2e-06
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	4e-06
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	6e-06
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	1e-05
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	1e-05
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	2e-05
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	3e-05
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	7e-05
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	7e-05
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	8e-05
cd04171	170	cd04171, SelB, SelB, the dedicated elongation fact	9e-05
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	2e-04
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	2e-04
COG1159	298	COG1159, Era, GTPase [General function prediction	2e-04
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	4e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	5e-04
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	5e-04
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	7e-04
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	8e-04
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	8e-04
pfam03193	161	pfam03193, DUF258, Protein of unknown function, DU	0.001
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	0.002
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	0.002
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.002
TIGR00436	270	TIGR00436, era, GTP-binding protein Era	0.003
COG1162	301	COG1162, COG1162, Predicted GTPases [General funct	0.003

>gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed

 Score =  186 bits (474), Expect = 1e-59
 Identities = 70/146 (47%), Positives = 96/146 (65%)

Query: 69  NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
            +F +  EF  +A      P  D PEIAFAGRSNVGKSS++NALT +  + RTS  PG T
Sbjct: 1   KLFIHNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRT 60

Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
           Q INFF++  KL LVDLPGYG+A   +E K+ W++L++EY+ TR +LK V LLID++  +
Sbjct: 61  QLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPL 120

Query: 189 KPRDHELISLMERSQTKYQVVLTKTD 214
           K  D ++I  ++       +VLTK D
Sbjct: 121 KELDLQMIEWLKEYGIPVLIVLTKAD 146

Length = 196

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score =  181 bits (462), Expect = 4e-58
 Identities = 66/139 (47%), Positives = 94/139 (67%)

Query: 94  EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA 153
           E+AFAGRSNVGKSS++NALT +  + RTS  PG TQ INFF +G K  LVDLPGYG+A  
Sbjct: 1   EVAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNVGDKFRLVDLPGYGYAKV 60

Query: 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 213
            +EV++ W +L++EY+  R +LK V LLID + G  P D E++  +E     + +VLTK 
Sbjct: 61  SKEVREKWGKLIEEYLENRENLKGVVLLIDARHGPTPIDLEMLEFLEELGIPFLIVLTKA 120

Query: 214 DTVFPIDVARRAMQIEEVI 232
           D +   ++A+   +I+E +
Sbjct: 121 DKLKKSELAKVLKKIKEEL 139

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB

 Score =  176 bits (449), Expect = 4e-56
 Identities = 66/139 (47%), Positives = 88/139 (63%)

Query: 76  EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
           EF  +A      P  D PEIAFAGRSNVGKSS++NALT +  + RTS  PG TQ INFF+
Sbjct: 2   EFVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE 61

Query: 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
           +     LVDLPGYG+A   +E K+ W++L++EY+  R +LK V LL+D +  +K  D E+
Sbjct: 62  VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEM 121

Query: 196 ISLMERSQTKYQVVLTKTD 214
           I  +        +VLTK D
Sbjct: 122 IEWLRERGIPVLIVLTKAD 140

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178

>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only]

 Score =  172 bits (439), Expect = 2e-54
 Identities = 73/164 (44%), Positives = 103/164 (62%)

Query: 69  NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
            +  +K +F  +A     +P  DLPEIAFAGRSNVGKSS++NALT Q  + RTS  PG T
Sbjct: 1   KLNYHKAKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRT 60

Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
           Q INFF++  +L LVDLPGYG+A   +EVK+ W++L++EY+  R +LK V LLID +   
Sbjct: 61  QLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPP 120

Query: 189 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
           K  D E+I  +        VVLTK D +   +  ++  ++ E +
Sbjct: 121 KDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEEL 164

Length = 200

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 86.6 bits (215), Expect = 8e-22
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 94  EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--TINFFKLGTKLCLVDLPGYGFA 151
            +A  GR NVGKS+++NALT    V   SD PG T+   +    LG ++ LVD PG    
Sbjct: 1   RVALVGRPNVGKSTLINALTGA-KVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLI-- 57

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMERSQTKYQVVL 210
             +   +    E    ++        + L++D   G+   D E++  L +  +    +VL
Sbjct: 58  --EGASEGKGVEGFNRFLEAIREADLILLVVDASEGLTEDDEEILEELEKLPKKPIILVL 115

Query: 211 TK 212
            K
Sbjct: 116 NK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 93  PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF-A 151
           PEI F GRSNVGKS+++  LT +   VR   +PG+T+  N +  G  + L DLPG+GF +
Sbjct: 10  PEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWGDFI-LTDLPGFGFMS 66

Query: 152 YAKEEVKDAWEELVKEYV 169
              +EV++  ++ +  Y+
Sbjct: 67  GVPKEVQEKIKDEIVRYI 84

Length = 201

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 18/126 (14%)

Query: 96  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGY--G 149
           A  GR NVGKSS+LNAL  Q  V   S  PG T+              + L+D PG    
Sbjct: 1   AIFGRPNVGKSSLLNALLGQN-VGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTKYQV 208
               +E V++A +         R  L  V L++D+   + P + E  + L+        +
Sbjct: 60  GGLGRERVEEARQVA------DRADL--VLLVVDS--DLTPVEEEAKLGLLRERGKPVLL 109

Query: 209 VLTKTD 214
           VL K D
Sbjct: 110 VLNKID 115

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 16/146 (10%)

Query: 96  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGT-----KLCLVDLPGYGF 150
              GR  VGKSS+LNAL     V   SD PG T+  + +         KL LVD PG   
Sbjct: 1   VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGL-- 57

Query: 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPR-DHELISLMERSQTKYQV 208
               +E      E +   +     L  + L++D T    +      ++  + +      +
Sbjct: 58  ----DEFGGLGREELARLLLRGADL--ILLVVDSTDRESEEDAKLLILRRLRKEGIPIIL 111

Query: 209 VLTKTDTVFPIDVARRAMQIEEVIFY 234
           V  K D +   +V       E     
Sbjct: 112 VGNKIDLLEEREVEELLRLEELAKIL 137

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 14/140 (10%)

Query: 96  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTK---LCLVDLPGYGFAY 152
              G++  GKSS+ NAL     V    D+   T+    +   T    L L+DLPG G   
Sbjct: 1   GLMGKTGAGKSSLCNALFGT-EVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVGERG 59

Query: 153 AKEEVKDAW-EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL-MERSQTKYQVVL 210
                +D   EEL +  +        V  L+D        DH+   L +         VL
Sbjct: 60  ----RRDREYEELYRRLLPE---ADLVLWLLDADDRALAADHDFYLLPLAGHDAPLLFVL 112

Query: 211 TKTDTVFPIDVARRAMQIEE 230
            + D V  +  AR    ++E
Sbjct: 113 NQVDPVLAV-SARTGWGLDE 131

The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           NVGKS+++N L  +  V +  +KPG+T+   + ++G  + L+D PG
Sbjct: 125 NVGKSTLINRLRGK-KVAKVGNKPGVTRGQQWIRIGPNIELLDTPG 169

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 99  GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
           G  NVGKS+++N L  +  V +TS++PG T+ I + KL   + L+D PG   
Sbjct: 139 GYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIP 189

Length = 322

>gnl|CDD|206726 cd04163, Era, E

 Score = 50.9 bits (123), Expect = 4e-08
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 21/131 (16%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG------TKLCLVDLPGY 148
           +A  GR NVGKS++LNAL  Q  +   S KP  T+       G       ++  VD PG 
Sbjct: 6   VAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRI---RGIYTDDDAQIIFVDTPGI 61

Query: 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTK 205
              +  ++     E +VK   S   +LK    V  ++D    +   D  ++ L+++S+T 
Sbjct: 62  ---HKPKKKLG--ERMVKAAWS---ALKDVDLVLFVVDASEWIGEGDEFILELLKKSKTP 113

Query: 206 YQVVLTKTDTV 216
             +VL K D V
Sbjct: 114 VILVLNKIDLV 124

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 23/147 (15%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 149
           I   GR N GKSS++NALT Q  +   SD PG T     + +    LG  + L+D  G  
Sbjct: 9   IGIFGRRNAGKSSLINALTGQ-DIAIVSDVPGTTTDPVYKAMELLPLGPVV-LIDTAG-- 64

Query: 150 FAYAKEEVKDAWE--ELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQT 204
                  + D  E  EL  E   TR  L +     L++D   G    + ELI  ++  + 
Sbjct: 65  -------LDDEGELGELRVE--KTREVLDKTDLALLVVDAGVGPGEYELELIEELKERKI 115

Query: 205 KYQVVLTKTDTVFPIDVARRAMQIEEV 231
            Y VV+ K D         +  +   +
Sbjct: 116 PYIVVINKIDLGEESAELEKLEKKFGL 142

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 20/132 (15%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFK---LGTKLCLVDL 145
            P +A  GR NVGKS++ N LT +    R    SD PG+T+   +     LG +  L+D 
Sbjct: 3   TPVVAIVGRPNVGKSTLFNRLTGR----RIAIVSDTPGVTRDRIYGDAEWLGREFILIDT 58

Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERS 202
            G       +  +D  +EL++E     ++++    +  ++D + G+ P D E+  ++ RS
Sbjct: 59  GGL-----DDGDEDELQELIRE--QALIAIEEADVILFVVDGREGITPADEEIAKILRRS 111

Query: 203 QTKYQVVLTKTD 214
           +    +V+ K D
Sbjct: 112 KKPVILVVNKID 123

Length = 444

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 87  FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLV 143
           F A +   I   G  NVGKSS++NAL      V  S  PG T   QTI    L   + L 
Sbjct: 77  FSALNEATIGLVGYPNVGKSSLINALVGS-KKVSVSSTPGKTKHFQTIF---LEPGITLC 132

Query: 144 DLPG 147
           D PG
Sbjct: 133 DCPG 136

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 21/125 (16%)

Query: 99  GRSNVGKSSMLNALTRQWGVVR---TSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAY 152
           GR NVGKS++ N LT +    R    SD PG+T   +       G +  L+D  G     
Sbjct: 4   GRPNVGKSTLFNRLTGR----RDAIVSDTPGVTRDRKYGEAEWGGREFILIDTGGI---- 55

Query: 153 AKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQVV 209
             E   +   + ++E     ++++    +  ++D + G+ P D E+   + +S+    +V
Sbjct: 56  --EPDDEGISKEIRE--QAEIAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILV 111

Query: 210 LTKTD 214
           + K D
Sbjct: 112 VNKID 116

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 49.7 bits (120), Expect = 4e-07
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 25/134 (18%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLT-----QTINFFKLGTKLCLV 143
            P +A  GR NVGKS++ N LT +    R    +D PG+T         +  LG +  L+
Sbjct: 1   KPVVAIVGRPNVGKSTLFNRLTGK----RDAIVADTPGVTRDRIYGEAEW--LGREFILI 54

Query: 144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLME 200
           D  G       E   D +E+ ++E     ++++    +  ++D + G+ P D E+  ++ 
Sbjct: 55  DTGGI------EPDDDGFEKQIRE--QAELAIEEADVILFVVDGRAGLTPADEEIAKILR 106

Query: 201 RSQTKYQVVLTKTD 214
           +S     +V+ K D
Sbjct: 107 KSNKPVILVVNKVD 120

Length = 435

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 21/132 (15%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYG 149
           I   G  NVGKS++LN L      + T  KPG T+       +      K  L+D  G  
Sbjct: 4   IVIVGDPNVGKSTLLNRLLGNKISI-TEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG-- 60

Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVC----LLIDTKWGVKPRDHELISLMERSQTK 205
                   ++ ++ + + Y     S  RV     L++D +  ++ +  E+I   E S   
Sbjct: 61  --------QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SGVP 111

Query: 206 YQVVLTKTDTVF 217
             +V  K D   
Sbjct: 112 IILVGNKIDLRD 123

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA

 Score = 47.8 bits (115), Expect = 5e-07
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 14/149 (9%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFA 151
           IA  GR NVGKSS+LNAL  +  V+  SD  G T+    + F   G K  L+D  G    
Sbjct: 5   IAIIGRPNVGKSSLLNALLGEERVI-VSDIAGTTRDSIDVPFEYDGQKYTLIDTAG---I 60

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQV 208
             K +V +  E+     + T  +++R   V L++D   G+  +D  +  L+        +
Sbjct: 61  RKKGKVTEGIEKYS--VLRTLKAIERADVVLLVLDASEGITEQDLRIAGLILEEGKALII 118

Query: 209 VLTKTDTVFPIDVARRAM--QIEEVIFYL 235
           V+ K D V   +   +    ++   + +L
Sbjct: 119 VVNKWDLVEKDEKTMKEFEKELRRKLPFL 147

This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 49.4 bits (119), Expect = 5e-07
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 25/131 (19%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLT-----QTINFFKLGTKLCLVDLP 146
           +A  GR NVGKS++ N LT +    R    SD PG+T         +   G +  L+D  
Sbjct: 2   VAIVGRPNVGKSTLFNRLTGK----RDAIVSDTPGVTRDRKYGDAEW--GGREFILIDTG 55

Query: 147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLK---RVCLLIDTKWGVKPRDHELISLMERSQ 203
           G       EE  D  ++ ++E     ++++    +  ++D + G+ P D E+   + +S 
Sbjct: 56  GI------EEDDDGLDKQIRE--QAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSG 107

Query: 204 TKYQVVLTKTD 214
               +V  K D
Sbjct: 108 KPVILVANKID 118

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 12/74 (16%)

Query: 82  KVSSSFPAPDLPE--------IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---T 130
            +    P  +  E        IA  GR NVGKS+++NAL  +  V+  SD  G T+    
Sbjct: 154 AILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVI-VSDIAGTTRDSID 212

Query: 131 INFFKLGTKLCLVD 144
           I F + G K  L+D
Sbjct: 213 IPFERNGKKYTLID 226

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 30/155 (19%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVV--------RTSD------KPGLTQTINFFKLGTKL 140
           +   G  + GK+++  +L  Q G +           D      + G+T      +     
Sbjct: 2   VGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPK 61

Query: 141 C---LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 197
                +D PG+             E+  KE V          L++D   GV+P+  E ++
Sbjct: 62  RRINFIDTPGH-------------EDFSKETVRGLAQADGALLVVDANEGVEPQTREHLN 108

Query: 198 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
           +         V + K D V   D      +I+E++
Sbjct: 109 IALAGGLPIIVAVNKIDRVGEEDFDEVLREIKELL 143

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 97  FAGRSNVGKSSMLNALTRQWGVVR----------TSDKPGLTQTINFFKLGTKLCLVDLP 146
             G +NVGKS+++NAL +  G              S  PG T  +    LG    L D P
Sbjct: 130 VVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTTLGLIKIPLGEGKKLYDTP 189

Query: 147 GY 148
           G 
Sbjct: 190 GI 191

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKLGTKLCLVDLPG 147
           +   G   VGKSS++NAL  +     TS     PG T+ I   ++ +K+ L+D PG
Sbjct: 102 VGVVGYPKVGKSSIINALKGR-HSASTSPIPGSPGYTKGIQLVRIDSKIYLIDTPG 156

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 11/70 (15%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLTQTIN--FFKL-GTKLCLVDLPG-Y 148
           IA  G  NVGK+++ NALT  RQ       + PG+T       FK  G ++ +VDLPG Y
Sbjct: 3   IALVGNPNVGKTTLFNALTGARQ----HVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGTY 58

Query: 149 GF-AYAKEEV 157
               Y++EE 
Sbjct: 59  SLSPYSEEEK 68

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 93  PEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLT---QTINFFKLGTKLCLVDLPG- 147
             +A  G  NVGK+++ NALT   G   +  + PG+T   +       G ++ +VDLPG 
Sbjct: 4   LTVALVGNPNVGKTTLFNALT---GANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGT 60

Query: 148 YGFAYAKEEVKDAWEELVKE 167
           Y      E+ K A + L++ 
Sbjct: 61  YSLTAYSEDEKVARDFLLEG 80

Length = 653

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 97  FAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
             G +NVGKSS++N L +Q      V+ TS  PG T  +    L     L D PG 
Sbjct: 159 VVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGI 214

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 43/146 (29%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------------GLTQTINFFKLGTKLC 141
           +A  GR NVGKS++LNAL  Q  +   S KP                Q I          
Sbjct: 8   VAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQII---------- 56

Query: 142 LVDLPGYGFA-------YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 194
            VD PG              +    + ++         V L  V  ++D    + P D  
Sbjct: 57  FVDTPGI-HKPKRALNRAMNKAAWSSLKD---------VDL--VLFVVDADEKIGPGDEF 104

Query: 195 LISLMERSQTKYQVVLTKTDTVFPID 220
           ++  +++ +T   +VL K D V   +
Sbjct: 105 ILEKLKKVKTPVILVLNKIDLVKDKE 130

Length = 292

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 44.3 bits (106), Expect = 3e-05
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)

Query: 82  KVSSSFPAPDLPE-------IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TI 131
            +    P  +  +       IA  GR NVGKSS++NAL  +  V+  SD  G T+     
Sbjct: 156 AILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVI-VSDIAGTTRDSIDT 214

Query: 132 NFFKLGTKLCLVD 144
            F + G K  L+D
Sbjct: 215 PFERDGQKYTLID 227

Length = 435

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           NVGKS+++N L  +  V +  ++PG+T+   + KL   L L+D PG
Sbjct: 128 NVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPG 172

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 41.3 bits (98), Expect = 7e-05
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 11/68 (16%)

Query: 96  AFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLT--QTINFFKLGTKLC-LVDLPG-YG 149
           A  G  NVGK+++ NALT  RQ    +  + PG+T  +    FKLG K   +VDLPG Y 
Sbjct: 1   ALVGNPNVGKTTLFNALTGARQ----KVGNWPGVTVEKKEGEFKLGGKEIEIVDLPGTYS 56

Query: 150 F-AYAKEE 156
              Y+++E
Sbjct: 57  LTPYSEDE 64

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 95  IAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           +A  G  + GKS++LNAL  +     GV  T+       T+  + L   + LVD PG
Sbjct: 3   LAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVI----TVLRYGLLKGVVLVDTPG 55

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome

 Score = 41.4 bits (98), Expect = 9e-05
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 26/149 (17%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINF----FKLGTKLCLVDLPGYG 149
           I  AG  + GK++++ ALT         +K  G+T  + F       G +L  +D+PG+ 
Sbjct: 2   IGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPDGKRLGFIDVPGH- 60

Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RDH-ELISLMERSQTKY 206
                       E+ VK  ++    +  V L++    G+ P  R+H E++ L+   +   
Sbjct: 61  ------------EKFVKNMLAGAGGIDAVLLVVAADEGIMPQTREHLEILELLGIKKG-- 106

Query: 207 QVVLTKTDTVFPIDVARRAMQIEEVIFYL 235
            VVLTK D V   D  R  +  EE++  L
Sbjct: 107 LVVLTKADLV---DEDRLELVEEEILELL 132

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
           NVGKSS++N+L R          PG+T+++    L   + L+D PG 
Sbjct: 126 NVGKSSVINSLKRS-RACNVGATPGVTKSMQEVHLDKHVKLLDSPGV 171

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 16/126 (12%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFA 151
           +A  G  NVGKSS+LNAL +Q   +  SD  G T+ +   +F   G  + L+D  G    
Sbjct: 206 LAIVGSPNVGKSSLLNALLKQDRAI-VSDIKGTTRDVVEGDFELNGILIKLLDTAGI--- 261

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQV 208
               E  D  E L  E   +  ++K+   V  ++D    +   D  LI  + +S+  + +
Sbjct: 262 ---REHADFVERLGIE--KSFKAIKQADLVIYVLDASQPLTKDD-FLIIDLNKSKKPFIL 315

Query: 209 VLTKTD 214
           VL K D
Sbjct: 316 VLNKID 321

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 20/150 (13%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGF 150
           +A  GR NVGKS++LNAL  Q  +   S KP  T    + I       ++  VD PG   
Sbjct: 9   VAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGI-- 64

Query: 151 AYAKEEVKDAWEE-LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVV 209
                + K A  E + K   S    +  +  ++D   G  P D  ++  +++++T   +V
Sbjct: 65  ----HKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILV 120

Query: 210 LTKTDTVFP-------IDVARRAMQIEEVI 232
           + K D V P       I   ++ +  +E++
Sbjct: 121 VNKIDKVKPKTVLLKLIAFLKKLLPFKEIV 150

Length = 298

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           +   G  NVGKSS +NAL  ++  ++    PG T+     KL  ++ L D PG
Sbjct: 94  VGVVGLPNVGKSSFINALLNKFK-LKVGSIPGTTKLQQDVKLDKEIYLYDTPG 145

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 32/155 (20%)

Query: 95  IAFAGRSNVGKSSMLNALTRQ-WGVVRTSDKPGLTQTI--NFFKLGTKLC-LVDLPGY-- 148
           +   GR NVGKSS+LNAL  +   +V  +D  G T+ +      L      LVD  G   
Sbjct: 220 VVIIGRPNVGKSSLLNALLGRDRAIV--TDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE 277

Query: 149 --------GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME 200
                   G   AK+ +++A                 V  ++D    +   D  LI L  
Sbjct: 278 TDDVVERIGIERAKKAIEEA---------------DLVLFVLDASQPLDKEDLALIEL-L 321

Query: 201 RSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYL 235
             +    VVL K D V  I++    +   + I  +
Sbjct: 322 PKKKPIIVVLNKADLVSKIELESEKLANGDAIISI 356

Length = 454

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 96  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPG 147
              G  NVGKS++L+ALT     V  +  P  T   N     F  G  + ++DLPG
Sbjct: 1   GLVGLPNVGKSTLLSALTS--AKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPG 54

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 52  LDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPD-LPEIAFAGRSNVGKSSMLN 110
           L   P+  S+   R   ++    L+    A+ +S F  P  L  +A  GR NVGKSS+LN
Sbjct: 410 LGE-PYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLN 468

Query: 111 ALTRQ 115
            LT +
Sbjct: 469 QLTHE 473

Length = 712

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVD 144
           IA  GR NVGKSS++NA+  +  V+  SD  G T+    I F + G K  L+D
Sbjct: 181 IAIIGRPNVGKSSLINAILGEERVI-VSDIAGTTRDSIDIEFERDGRKYVLID 232

Length = 444

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score = 39.4 bits (93), Expect = 8e-04
 Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           NVGKS+++N L  +  + +T ++PG+T+   + KLG  L L+D PG
Sbjct: 131 NVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPG 175

Length = 287

>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 95  IAFAGRSNVGKSSMLNALT---RQW-GVVRTSDKPG--LTQTINFFKLGTKLCLVDLPG- 147
              AG+S VGKS++LNAL        G +      G   T  +  F L     L+D PG 
Sbjct: 38  SVLAGQSGVGKSTLLNALLPELDLRTGEISEKLGRGRHTTTHVELFPLPGGGLLIDTPGF 97

Query: 148 --YGFAY-AKEEVKDAWEELVK 166
              G  +   EE+ + + E  +
Sbjct: 98  RELGLWHLDPEELAEYFPEFRE 119

Length = 161

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           + F G  NVGKSS++N L R   V + +  PG T+   +  L  ++ L+D PG
Sbjct: 105 VGFIGYPNVGKSSVINTL-RSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 13/21 (61%), Positives = 16/21 (76%)

Query: 95  IAFAGRSNVGKSSMLNALTRQ 115
           +  AGR NVGKSS+LNAL  +
Sbjct: 218 VVIAGRPNVGKSSLLNALLGE 238

Length = 449

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 95  IAFAGRSNVGKSSMLNALTRQ 115
           +  AG+ NVGKSS+LNAL  +
Sbjct: 6   VVIAGKPNVGKSSLLNALAGR 26

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGF 150
           +A  GR NVGKS++LN L  Q  +  TS K   T      I      +++  +D PG+  
Sbjct: 3   VAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGI-HTTGASQIIFIDTPGF-- 58

Query: 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISLMERSQTKYQVV 209
               E+       ++KE  S    +  +  ++D  +W        +++ ++  +    + 
Sbjct: 59  ---HEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQW--NGDGEFVLTKLQNLKRPVVLT 113

Query: 210 LTKTDTVFPIDV 221
             K D  F   +
Sbjct: 114 RNKLDNKFKDKL 125

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270

>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only]

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 96  AFAGRSNVGKSSMLNAL----TRQWGVVRTSDKPG--LTQTINFFKLGTKLCLVDLPGY- 148
              G+S VGKS+++NAL     ++ G +      G   T  +  F L     ++D PG+ 
Sbjct: 168 VLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFR 227

Query: 149 --GFAYA-KEEVKDAWEEL 164
             G A+   E++  A+ E 
Sbjct: 228 SLGLAHLEPEDLVQAFPEF 246

Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
COG0218	200	Predicted GTPase [General function prediction only	99.97
COG0486	454	ThdF Predicted GTPase [General function prediction	99.95
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.93
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
COG2262	411	HflX GTPases [General function prediction only]	99.91
PRK11058	426	GTPase HflX; Provisional	99.91
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.9
COG1159	298	Era GTPase [General function prediction only]	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.89
COG1160	444	Predicted GTPases [General function prediction onl	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.88
COG1160	444	Predicted GTPases [General function prediction onl	99.86
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.85
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.84
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.84
PRK00089	292	era GTPase Era; Reviewed	99.83
PRK04213	201	GTP-binding protein; Provisional	99.82
PRK15494	339	era GTPase Era; Provisional	99.81
PRK00093	435	GTP-binding protein Der; Reviewed	99.81
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.81
PRK03003	472	GTP-binding protein Der; Reviewed	99.81
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.81
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.8
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.8
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.8
COG1084	346	Predicted GTPase [General function prediction only	99.8
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.8
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.8
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.8
PRK12298	390	obgE GTPase CgtA; Reviewed	99.8
PRK03003	472	GTP-binding protein Der; Reviewed	99.79
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.79
PRK00093	435	GTP-binding protein Der; Reviewed	99.78
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.78
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.78
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.78
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.77
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.77
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.77
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.77
cd00881	189	GTP_translation_factor GTP translation factor fami	99.76
PRK12297	424	obgE GTPase CgtA; Reviewed	99.76
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.76
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.76
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.75
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.75
PRK12299	335	obgE GTPase CgtA; Reviewed	99.75
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.74
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.74
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.74
KOG2486	320	consensus Predicted GTPase [General function predi	99.73
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.73
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.73
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.72
PRK12296	500	obgE GTPase CgtA; Reviewed	99.72
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.72
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.71
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.71
CHL00071	409	tufA elongation factor Tu	99.71
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.71
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.7
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.7
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.69
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.69
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.69
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.69
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.69
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.69
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.69
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.69
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.68
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.68
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.68
PRK12317	425	elongation factor 1-alpha; Reviewed	99.68
PRK12735	396	elongation factor Tu; Reviewed	99.67
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.67
PRK12736	394	elongation factor Tu; Reviewed	99.67
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.67
PLN03127	447	Elongation factor Tu; Provisional	99.67
PRK05306	787	infB translation initiation factor IF-2; Validated	99.67
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.67
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.67
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.67
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.67
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.67
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.67
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.66
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.66
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.66
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.66
COG3596	296	Predicted GTPase [General function prediction only	99.66
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.66
CHL00189	742	infB translation initiation factor 2; Provisional	99.66
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.66
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.66
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.66
PLN03126	478	Elongation factor Tu; Provisional	99.66
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.66
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.66
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.65
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.65
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.65
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.65
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.65
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.65
PLN00223	181	ADP-ribosylation factor; Provisional	99.65
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.65
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.65
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.65
PRK00049	396	elongation factor Tu; Reviewed	99.64
PTZ00133	182	ADP-ribosylation factor; Provisional	99.64
PRK00007	693	elongation factor G; Reviewed	99.64
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.64
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.64
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.64
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.64
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.64
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.64
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.64
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.64
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.63
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.63
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.63
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.63
PRK09866	741	hypothetical protein; Provisional	99.63
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.63
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.63
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.63
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.63
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.63
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.63
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.63
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.63
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.63
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.63
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.62
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.62
PRK04004	586	translation initiation factor IF-2; Validated	99.62
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.62
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.62
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.62
PLN03118	211	Rab family protein; Provisional	99.62
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.62
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.62
PRK12739	691	elongation factor G; Reviewed	99.62
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.62
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.62
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.61
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.61
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.61
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.61
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.61
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.61
PTZ00369	189	Ras-like protein; Provisional	99.61
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.61
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.61
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.61
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.61
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.6
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.6
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.6
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.6
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.6
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.6
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.6
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.6
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.6
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.6
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.6
PLN03110	216	Rab GTPase; Provisional	99.59
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.59
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.59
PLN00023	334	GTP-binding protein; Provisional	99.59
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.59
KOG0410	410	consensus Predicted GTP binding protein [General f	99.59
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.59
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.59
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.59
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.59
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.59
PRK10218	607	GTP-binding protein; Provisional	99.58
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.58
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.58
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.58
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.58
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.58
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.58
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.58
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.58
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.58
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.58
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.58
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.57
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.57
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.57
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.57
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.57
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.57
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.56
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.56
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.56
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.56
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.56
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.56
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.56
PTZ00416	836	elongation factor 2; Provisional	99.56
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.55
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.55
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.55
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.55
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.55
PRK05433	600	GTP-binding protein LepA; Provisional	99.55
PRK13351	687	elongation factor G; Reviewed	99.55
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.55
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.54
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.54
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.54
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.54
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.54
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.54
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.54
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.54
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.53
PLN03108	210	Rab family protein; Provisional	99.53
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.53
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.53
PTZ00141	446	elongation factor 1- alpha; Provisional	99.53
COG0536	369	Obg Predicted GTPase [General function prediction	99.53
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.53
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.53
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.52
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.51
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.5
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.5
KOG1145	683	consensus Mitochondrial translation initiation fac	99.49
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.49
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.48
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.48
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.48
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.48
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.48
COG1100	219	GTPase SAR1 and related small G proteins [General	99.47
COG2229	187	Predicted GTPase [General function prediction only	99.46
KOG0394	210	consensus Ras-related GTPase [General function pre	99.45
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.45
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.44
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.44
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.44
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.44
COG1163	365	DRG Predicted GTPase [General function prediction	99.43
PRK07560	731	elongation factor EF-2; Reviewed	99.42
PLN00043	447	elongation factor 1-alpha; Provisional	99.41
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.41
PTZ00258	390	GTP-binding protein; Provisional	99.41
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.4
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.4
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.4
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.4
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.4
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.4
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.39
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.39
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.39
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.38
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.38
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.37
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.37
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.37
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.36
PRK12740	668	elongation factor G; Reviewed	99.36
KOG0090	238	consensus Signal recognition particle receptor, be	99.35
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.35
PRK09601	364	GTP-binding protein YchF; Reviewed	99.35
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.34
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.32
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.3
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.29
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.28
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.27
COG1161	322	Predicted GTPases [General function prediction onl	99.26
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.25
PRK09602	396	translation-associated GTPase; Reviewed	99.25
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.24
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.23
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.23
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.23
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.21
PRK13768	253	GTPase; Provisional	99.2
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.19
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.18
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.18
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.17
KOG0395	196	consensus Ras-related GTPase [General function pre	99.15
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.15
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.13
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.13
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.13
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.13
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.11
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.11
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.1
KOG0467	887	consensus Translation elongation factor 2/ribosome	99.09
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.09
PRK14845	1049	translation initiation factor IF-2; Provisional	99.08
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.08
PRK12289	352	GTPase RsgA; Reviewed	99.08
PRK13796	365	GTPase YqeH; Provisional	99.08
PRK12288	347	GTPase RsgA; Reviewed	99.07
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.06
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.06
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.06
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.05
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	99.04
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.01
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.0
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.99
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.98
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.97
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.97
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	98.96
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.95
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.95
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.93
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.9
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.9
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.89
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.89
PRK00098	298	GTPase RsgA; Reviewed	98.88
COG1162	301	Predicted GTPases [General function prediction onl	98.88
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	98.88
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.85
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	98.84
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.84
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.82
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.81
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.81
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.77
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.76
KOG0460	449	consensus Mitochondrial translation elongation fac	98.75
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.73
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.73
cd03112	158	CobW_like The function of this protein family is u	98.7
KOG2484	435	consensus GTPase [General function prediction only	98.7
COG3523	1188	IcmF Type VI protein secretion system component Va	98.65
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.63
KOG1143	591	consensus Predicted translation elongation factor	98.63
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	98.62
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.6
KOG2423	572	consensus Nucleolar GTPase [General function predi	98.59
COG0523	323	Putative GTPases (G3E family) [General function pr	98.57
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	98.53
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.52
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.51
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.5
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.48
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	98.47
PRK10416	318	signal recognition particle-docking protein FtsY;	98.44
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.44
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.42
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.41
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.39
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.37
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.36
PTZ00099	176	rab6; Provisional	98.35
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.33
PRK14974	336	cell division protein FtsY; Provisional	98.28
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.27
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.24
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.22
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.2
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.19
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.17
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.17
cd03114	148	ArgK-like The function of this protein family is u	98.17
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.16
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.14
KOG0780	483	consensus Signal recognition particle, subunit Srp	98.13
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.12
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.12
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.1
PRK10867	433	signal recognition particle protein; Provisional	98.1
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.09
PRK01889	356	GTPase RsgA; Reviewed	98.04
TIGR00959	428	ffh signal recognition particle protein. This mode	98.04
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.02
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.99
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.98
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.98
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.97
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.97
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.95
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.94
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.93
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.93
KOG1673	205	consensus Ras GTPases [General function prediction	97.91
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.91
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.91
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.84
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.84
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.82
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.82
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.79
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.76
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	97.76
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.73
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.7
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.66
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.66
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.65
KOG2484	435	consensus GTPase [General function prediction only	97.65
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.64
PF00004	132	AAA: ATPase family associated with various cellula	97.56
KOG0082	354	consensus G-protein alpha subunit (small G protein	97.53
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.52
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	97.52
KOG1533	290	consensus Predicted GTPase [General function predi	97.51
KOG3887	347	consensus Predicted small GTPase involved in nucle	97.49
cd02036	179	MinD Bacterial cell division requires the formatio	97.45
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.44
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.4
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.39
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.37
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.31
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.3
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.3
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.29
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.28
PRK13695	174	putative NTPase; Provisional	97.27
COG1341	398	Predicted GTPase or GTP-binding protein [General f	97.26
cd03111	106	CpaE_like This protein family consists of proteins	97.26
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.25
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.24
PRK12289	352	GTPase RsgA; Reviewed	97.23
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.22
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.17
PRK14737	186	gmk guanylate kinase; Provisional	97.15
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.15
KOG0781	587	consensus Signal recognition particle receptor, al	97.08
KOG4181	491	consensus Uncharacterized conserved protein [Funct	97.07
PRK14738	206	gmk guanylate kinase; Provisional	97.06
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.06
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.03
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	97.02
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.01
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.01
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.01
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.98
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.97
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.96
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.96
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.96
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.95
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	96.94
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	96.94
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.94
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.94
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.93
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.93
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.92
PRK08118	167	topology modulation protein; Reviewed	96.92
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.92
PRK07261	171	topology modulation protein; Provisional	96.92
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.91
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.91
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.9
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.89
PRK04195	482	replication factor C large subunit; Provisional	96.89
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.89
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.88
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.88
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.88
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.88
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.88
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.88
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.88
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.87
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.87
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.87
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.87
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.85
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.85
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.85
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.84
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.84
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.84
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.84
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.84
cd03110	179	Fer4_NifH_child This protein family's function is	96.83
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	96.83
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.83
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.82
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.82
PRK00098	298	GTPase RsgA; Reviewed	96.82
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.81
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.81
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.81
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.81
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.81
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.81

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.97  E-value=1.6e-29  Score=195.73  Aligned_cols=159  Identities=45%  Similarity=0.698  Sum_probs=144.6

Q ss_pred             hHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccc
Q 026538           75 LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK  154 (237)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~  154 (237)
                      ..++.++....+.|.+..|.|+++|++|||||||||+|++....+.++..||.|+.++++..+..+.++|.|||+.+...
T Consensus         7 ~~f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~   86 (200)
T COG0218           7 AKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVP   86 (200)
T ss_pred             cEEEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCC
Confidence            34556666777888899999999999999999999999998678999999999999999999888999999999998777


Q ss_pred             hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      ....+.|..++..|+..+....++++++|+.+++...|.++++++...++|+++|+||+|.++..+..+.+..+++.+.
T Consensus        87 k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~  165 (200)
T COG0218          87 KEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELK  165 (200)
T ss_pred             HHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence            7889999999999999998899999999999999999999999999999999999999999998888877777776554

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.95  E-value=4e-28  Score=208.33  Aligned_cols=174  Identities=25%  Similarity=0.242  Sum_probs=133.4

Q ss_pred             CCcceEEeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHH
Q 026538           33 RRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNAL  112 (237)
Q Consensus        33 ~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L  112 (237)
                      |..+++... .+|+.+|||+|+++.............+......++..+...+.+  ..+.+++++|.||+|||||+|+|
T Consensus       161 r~~li~~~a-~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~il--r~G~kvvIiG~PNvGKSSLLNaL  237 (454)
T COG0486         161 REALLELLA-QVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKIL--REGLKVVIIGRPNVGKSSLLNAL  237 (454)
T ss_pred             HHHHHHHHH-HheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hcCceEEEECCCCCcHHHHHHHH
Confidence            445555555 899999999998888777666555555555555666666655444  36679999999999999999999


Q ss_pred             hcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccc---hHHHHHHHHHHHHHHhccccccEEEEEEeCCC
Q 026538          113 TRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK---EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  186 (237)
Q Consensus       113 ~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~  186 (237)
                      +++ +.++|++.||||+|+....   .|.++.++||+|++++.+.   ..+++.+..        ...+|+|+||+|++.
T Consensus       238 ~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~--------i~~ADlvL~v~D~~~  308 (454)
T COG0486         238 LGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA--------IEEADLVLFVLDASQ  308 (454)
T ss_pred             hcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH--------HHhCCEEEEEEeCCC
Confidence            999 6699999999999986444   4899999999999975322   223333333        334999999999998


Q ss_pred             CCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          187 GVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       187 ~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                      +++..+...+. ....+.|+++|+||+|+..+.
T Consensus       309 ~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~  340 (454)
T COG0486         309 PLDKEDLALIE-LLPKKKPIIVVLNKADLVSKI  340 (454)
T ss_pred             CCchhhHHHHH-hcccCCCEEEEEechhccccc
Confidence            87777777777 445578999999999998643

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.93  E-value=1.9e-24  Score=169.38  Aligned_cols=155  Identities=41%  Similarity=0.654  Sum_probs=123.1

Q ss_pred             hhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHH
Q 026538           80 AAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKD  159 (237)
Q Consensus        80 ~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~  159 (237)
                      ++-...+.++...++|+++|.+|+|||||+|+|++......+++.+|+|.++.++..+..+.+|||||+...........
T Consensus         6 ~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~   85 (179)
T TIGR03598         6 SAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKE   85 (179)
T ss_pred             eeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHH
Confidence            33444556667889999999999999999999999743456778888999887766566899999999876544444455


Q ss_pred             HHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 026538          160 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFY  234 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~  234 (237)
                      .|..+...|+.....++++++|+|++.++...+..+++.+...++|+++|+||+|+....+.....+.+++.++.
T Consensus        86 ~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~  160 (179)
T TIGR03598        86 KWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKK  160 (179)
T ss_pred             HHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh
Confidence            677777777776666899999999988888888888888888889999999999998777776677777776653

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=1.5e-24  Score=186.08  Aligned_cols=201  Identities=18%  Similarity=0.215  Sum_probs=130.0

Q ss_pred             cccccccccCCChhhhHHHHHhhcCCCcceEEeecccccccCCCCCCCCCCChhHHHHHHHhh--hhhhhHHHHhhh--c
Q 026538            8 SKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI--FRNKLEFFAAAK--V   83 (237)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~   83 (237)
                      -+.++++++|...+.+++..+++.+.+..+....++++  .++|+|+.   ...+++.+..++  +...+..+...+  .
T Consensus       106 ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~--~~g~gE~~---~~~~~~~i~~ri~~l~~~L~~~~~~~~~~  180 (351)
T TIGR03156       106 RARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIG--TRGPGETQ---LETDRRLIRERIAQLKKELEKVEKQRERQ  180 (351)
T ss_pred             hccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCC--CCCCChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677779999999999999999998877655554454  36666642   133344455444  222333222222  2


Q ss_pred             cCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----cCCeEEEEeCCCCCCcccchHHHH
Q 026538           84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKD  159 (237)
Q Consensus        84 ~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~  159 (237)
                      +..+.+.+.++|+++|++|+|||||+|+|++..  ..+.+.+++|.+.....    .+..+.+|||||+......+ ..+
T Consensus       181 r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~-lie  257 (351)
T TIGR03156       181 RRRRKRADVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHE-LVA  257 (351)
T ss_pred             HhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHH-HHH
Confidence            222333567999999999999999999999984  56777788877654221    36789999999984321122 112


Q ss_pred             HHHHHHHHHHhccccccEEEEEEeCCCCCChhHH----HHHHHHHhcCCcEEEEEecCCCCChHH
Q 026538          160 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~----~~~~~l~~~~~piilv~NK~Dl~~~~~  220 (237)
                      .+.....    ....+|++++|+|++++......    .+++.+...+.|+++|+||+|+.+..+
T Consensus       258 ~f~~tle----~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~  318 (351)
T TIGR03156       258 AFRATLE----EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR  318 (351)
T ss_pred             HHHHHHH----HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh
Confidence            2332222    22339999999999876544332    333333334789999999999976543

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>COG2262 HflX GTPases [General function prediction only]

Probab=99.91  E-value=5.9e-24  Score=179.85  Aligned_cols=202  Identities=19%  Similarity=0.231  Sum_probs=138.4

Q ss_pred             ccccccccccCCChhhhHHHHHhhcCCCcceEEeecccccccCCCCCCCCCCChhHHHHHHHhh--hhhhhHHHHhhh--
Q 026538            7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI--FRNKLEFFAAAK--   82 (237)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--   82 (237)
                      +-+++++.++|+..++++|..+++.+.|..+....+++.  ...|+|.   ....+++.+..+|  +...++.+...+  
T Consensus       108 ~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG--~rGpGE~---~lE~drR~ir~rI~~i~~eLe~v~~~R~~  182 (411)
T COG2262         108 QRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGIG--FRGPGET---QLETDRRRIRRRIAKLKRELENVEKAREP  182 (411)
T ss_pred             HHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCCC--CCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677779999999999999999999999994443333  6667765   5666777788777  344444444333  


Q ss_pred             ccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE----EEcCCeEEEEeCCCCCCcccchHHH
Q 026538           83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPGYGFAYAKEEVK  158 (237)
Q Consensus        83 ~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~----~~~~~~~~liDTpG~~~~~~~~~~~  158 (237)
                      .++.+.+.+.|.|+++|++|+|||||+|+|++..  ..+.+..+.|-+...    ...+..+.+-||-||....... +-
T Consensus       183 ~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~-LV  259 (411)
T COG2262         183 RRKKRSRSGIPLVALVGYTNAGKSTLFNALTGAD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHP-LV  259 (411)
T ss_pred             HhhhhcccCCCeEEEEeeccccHHHHHHHHhccC--eeccccccccccCceeEEEeCCCceEEEecCccCcccCChH-HH
Confidence            4455666789999999999999999999999874  444555554444322    1236789999999986532221 22


Q ss_pred             HHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-H---HHHHHHHhcCCcEEEEEecCCCCChHH
Q 026538          159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-H---ELISLMERSQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~---~~~~~l~~~~~piilv~NK~Dl~~~~~  220 (237)
                      ++|...+    .....+|++++|+|++++..... .   .++..+....+|+++|+||+|++....
T Consensus       260 ~AFksTL----EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~  321 (411)
T COG2262         260 EAFKSTL----EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE  321 (411)
T ss_pred             HHHHHHH----HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence            2232222    22334899999999987632222 2   334444445689999999999886554

>PRK11058 GTPase HflX; Provisional

Probab=99.91  E-value=1e-23  Score=184.90  Aligned_cols=200  Identities=16%  Similarity=0.216  Sum_probs=131.8

Q ss_pred             ccccccccccCCChhhhHHHHHhhcCCCcceEEeecccccccCCCCCCCCCCChhHHHHHHHhhhh--hhhHHHHhhhc-
Q 026538            7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR--NKLEFFAAAKV-   83 (237)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-   83 (237)
                      +-+.++++++|.+.|.++|..++|.+.|..+..+.+++.  ...|+|.   ....+++.+..++..  ..+..+...+. 
T Consensus       113 ~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g--~~g~ge~---~~e~d~r~i~~ri~~l~~~L~~~~~~r~~  187 (426)
T PRK11058        113 QRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIG--LRGPGET---QLETDRRLLRNRIVQILSRLERVEKQREQ  187 (426)
T ss_pred             HhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCC--CCCCChh---HhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            345677779999999999999999999998888876665  4677764   344455555555522  22222222221 


Q ss_pred             -cCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cC-CeEEEEeCCCCCCcccchHHH
Q 026538           84 -SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LG-TKLCLVDLPGYGFAYAKEEVK  158 (237)
Q Consensus        84 -~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~-~~~~liDTpG~~~~~~~~~~~  158 (237)
                       +..+...+.|+|+++|++|||||||+|+|++..  ..+.+.+++|.+.....   .+ ..+.+|||||+......+ .-
T Consensus       188 ~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~--~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~-lv  264 (426)
T PRK11058        188 GRRARIKADVPTVSLVGYTNAGKSTLFNRITEAR--VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHD-LV  264 (426)
T ss_pred             HHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCc--eeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHH-HH
Confidence             112222466899999999999999999999984  33677788887754322   23 378999999984311111 11


Q ss_pred             HHHHHHHHHHHhccccccEEEEEEeCCCCCChhHH----HHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~----~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      +.+...    +.....+|++++|+|++++......    .++..+...++|+++|+||+|+.+.
T Consensus       265 e~f~~t----l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~  324 (426)
T PRK11058        265 AAFKAT----LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD  324 (426)
T ss_pred             HHHHHH----HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence            222222    2223449999999999876444332    3344444447899999999999753

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.90  E-value=5.1e-22  Score=157.41  Aligned_cols=161  Identities=43%  Similarity=0.669  Sum_probs=123.3

Q ss_pred             hhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcc
Q 026538           73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY  152 (237)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~  152 (237)
                      +..++..+.-..+..+.+..++|+++|.+|+|||||+|+|++......+++.+|+|+.+.++..+..+.+|||||+....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~   84 (196)
T PRK00454          5 HNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAK   84 (196)
T ss_pred             hHHHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcC
Confidence            34455555555566666788999999999999999999999874356677888999988877767889999999986543


Q ss_pred             cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                      ......+.+..+...|+.....++++++++|+..+....+..+.+.+...+.|+++|+||+|+....+.+...+.+.+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l  164 (196)
T PRK00454         85 VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKAL  164 (196)
T ss_pred             CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence            33334556667777777776667889999998877777666677777777899999999999987766666665555554


Q ss_pred             H
Q 026538          233 F  233 (237)
Q Consensus       233 ~  233 (237)
                      .
T Consensus       165 ~  165 (196)
T PRK00454        165 K  165 (196)
T ss_pred             H
Confidence            4

>COG1159 Era GTPase [General function prediction only]

Probab=99.90  E-value=8.5e-23  Score=166.69  Aligned_cols=131  Identities=27%  Similarity=0.336  Sum_probs=106.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      -.|+++|+||+|||||+|+|+|. .++++|+.+.||+...   +...+..+.++||||+..+  ....   ...+.+...
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p--k~~l---~~~m~~~a~   80 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP--KHAL---GELMNKAAR   80 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc--chHH---HHHHHHHHH
Confidence            36899999999999999999999 8899999999998753   3334778999999999875  2222   234555666


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHH-HHHHHHHHH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIE  229 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~-~~~~~~~l~  229 (237)
                      .+..++|+|+||+|+.+++...+..+++.++..+.|+++++||+|+..+.. +....+.+.
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~  141 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLK  141 (298)
T ss_pred             HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHH
Confidence            667779999999999999999999999999987789999999999987776 444444443

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.89  E-value=4.1e-23  Score=182.85  Aligned_cols=169  Identities=24%  Similarity=0.243  Sum_probs=109.3

Q ss_pred             eecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhccccee
Q 026538           40 RRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVV  119 (237)
Q Consensus        40 ~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~  119 (237)
                      ..+.+++.+|||+|+.+.............+......+..........  ...++|+++|++|+|||||+|+|++. ...
T Consensus       165 ~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~--~~~~kV~ivG~~nvGKSSLln~L~~~-~~a  241 (449)
T PRK05291        165 LLALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEALLASARQGEIL--REGLKVVIAGRPNVGKSSLLNALLGE-ERA  241 (449)
T ss_pred             HHHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCEEEEECCCCCCHHHHHHHHhCC-CCc
Confidence            344799999999987654443333222323333333333333322222  24579999999999999999999998 446


Q ss_pred             eccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHH
Q 026538          120 RTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI  196 (237)
Q Consensus       120 ~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~  196 (237)
                      .+++.+|+|++...   ...+.++.+|||||+.+.  .+.++...   +.........+|++++|+|++.+.+..+..++
T Consensus       242 ~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~--~~~ie~~g---i~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l  316 (449)
T PRK05291        242 IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRET--DDEVEKIG---IERSREAIEEADLVLLVLDASEPLTEEDDEIL  316 (449)
T ss_pred             ccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCC--ccHHHHHH---HHHHHHHHHhCCEEEEEecCCCCCChhHHHHH
Confidence            78889999987643   334778999999998752  12111110   11111122339999999999877655554444


Q ss_pred             HHHHhcCCcEEEEEecCCCCCh
Q 026538          197 SLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       197 ~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      ..  ..+.|+++|+||+|+.+.
T Consensus       317 ~~--~~~~piiiV~NK~DL~~~  336 (449)
T PRK05291        317 EE--LKDKPVIVVLNKADLTGE  336 (449)
T ss_pred             Hh--cCCCCcEEEEEhhhcccc
Confidence            43  346899999999999754

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.89  E-value=1.7e-22  Score=173.30  Aligned_cols=121  Identities=28%  Similarity=0.467  Sum_probs=99.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      |.|+++|.||||||||+|+|++. ..+++++.||+|+|..+.   ..+..|.++||+|+.... .+.+.   ..+..+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~-~~~l~---~~i~~Qa~   78 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD-EDELQ---ELIREQAL   78 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC-chHHH---HHHHHHHH
Confidence            78999999999999999999999 779999999999997543   347889999999997532 12222   22333444


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      ....+||+++||+|+..++++.|..+.+.+...++|+++|+||+|....
T Consensus        79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~  127 (444)
T COG1160          79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA  127 (444)
T ss_pred             HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh
Confidence            4455599999999999999999999999999888999999999998633

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=2.4e-22  Score=177.18  Aligned_cols=172  Identities=22%  Similarity=0.209  Sum_probs=112.7

Q ss_pred             CCcceEEeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHH
Q 026538           33 RRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNAL  112 (237)
Q Consensus        33 ~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L  112 (237)
                      |.++++... .+++.||||+|+.+.   .+.......+.......+.+. .....  ...++|+++|++|||||||+|+|
T Consensus       151 r~~l~~~~a-~iea~iDf~ee~~~~---~~~~~~l~~~~~~l~~ll~~~-~~~~~--~~g~kVvIvG~~nvGKSSLiN~L  223 (442)
T TIGR00450       151 RKSLLQLLA-QVEVNIDYEEDDDEQ---DSLNQLLLSIIAELKDILNSY-KLEKL--DDGFKLAIVGSPNVGKSSLLNAL  223 (442)
T ss_pred             HHHHHHHHH-HeeEECCcCCCCccH---HHHHHHHHHHHHHHHHHHHHH-HHHHh--hcCCEEEEECCCCCcHHHHHHHH
Confidence            344444554 799999999987332   222222333333333444444 22112  35679999999999999999999


Q ss_pred             hcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCC
Q 026538          113 TRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK  189 (237)
Q Consensus       113 ~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~  189 (237)
                      ++. ....+++.+|+|++....   ..+.++.+|||||+.+..  +.++...-.....++   ..+|++++|+|++.+.+
T Consensus       224 ~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie~~gi~~~~~~~---~~aD~il~V~D~s~~~s  297 (442)
T TIGR00450       224 LKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVERLGIEKSFKAI---KQADLVIYVLDASQPLT  297 (442)
T ss_pred             hCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHHHHHHHHHHHHH---hhCCEEEEEEECCCCCC
Confidence            997 446788999999986432   346789999999986531  111111101111222   33999999999987765


Q ss_pred             hhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          190 PRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       190 ~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      ..+. ++..+...++|+++|+||+|+...
T Consensus       298 ~~~~-~l~~~~~~~~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       298 KDDF-LIIDLNKSKKPFILVLNKIDLKIN  325 (442)
T ss_pred             hhHH-HHHHHhhCCCCEEEEEECccCCCc
Confidence            5554 566666568999999999998643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.88  E-value=8.5e-23  Score=155.01  Aligned_cols=132  Identities=27%  Similarity=0.261  Sum_probs=92.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|.||||||||+|+|+|.+  ..+++.||+|.+...   ...+..+.++||||+.+-.....-    +.....|+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e----e~v~~~~l   74 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE----ERVARDYL   74 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH----HHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH----HHHHHHHH
Confidence            479999999999999999999995  778999999998754   334788999999996542222111    12333444


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      . ....|++++|+|+++.  +.+..+..++.+.++|+++|+||+|+.......-..+.+.+.++
T Consensus        75 ~-~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg  135 (156)
T PF02421_consen   75 L-SEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLG  135 (156)
T ss_dssp             H-HTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT
T ss_pred             h-hcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC
Confidence            3 2349999999999852  55667888888899999999999998754433333445555443

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.86  E-value=2.5e-21  Score=166.23  Aligned_cols=140  Identities=27%  Similarity=0.340  Sum_probs=107.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHH-HH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-VK  166 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~-~~  166 (237)
                      ..++|+++|.||+|||||+|+|+++ ...++++.+|||+|.   .+...+..+.++||+|+.....   +.+..+.+ +.
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k---i~e~~E~~Sv~  252 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK---ITESVEKYSVA  252 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccc---cccceEEEeeh
Confidence            4689999999999999999999999 558999999999986   3445588999999999865211   11100000 11


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh--HHHHHHHHHHHHHHHh
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEEVIFY  234 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~~~l~~  234 (237)
                      ........+|++++|+|+..+++.++..+...+...+.++++|+||||++..  .........++..+..
T Consensus       253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~  322 (444)
T COG1160         253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPF  322 (444)
T ss_pred             hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcc
Confidence            2223333499999999999999999999999999999999999999999876  4445566666665554

>TIGR00436 era GTP-binding protein Era

Probab=99.85  E-value=3.8e-20  Score=154.20  Aligned_cols=128  Identities=20%  Similarity=0.222  Sum_probs=91.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      +|+++|++|||||||+|+|++. ....+++.++||++..   ....+..+.+|||||+.+..  ....   ..+...+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~l~---~~~~~~~~~   75 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK--HSLN---RLMMKEARS   75 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc--chHH---HHHHHHHHH
Confidence            6899999999999999999998 6678899999998753   22235679999999986531  1111   122222333


Q ss_pred             ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI  228 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l  228 (237)
                      ....+|++++|+|++...... ..++..+...+.|+++|+||+|+..+.+.......+
T Consensus        76 ~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~  132 (270)
T TIGR00436        76 AIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKY  132 (270)
T ss_pred             HHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHH
Confidence            334599999999998754443 556677777789999999999998665544433333

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.84  E-value=3.9e-20  Score=134.80  Aligned_cols=113  Identities=24%  Similarity=0.399  Sum_probs=85.2

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      +|+++|.+|+|||||+|+|++. ....++..+++|+.....   ..+..+.++||||+.+........    .....++.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~----~~~~~~~~   75 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG----KEIRKFLE   75 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH----HHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH----HHHHHHHH
Confidence            5899999999999999999997 456788889998887432   246678999999997643332211    12333444


Q ss_pred             ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEec
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK  212 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK  212 (237)
                      ....+|+++||+|+.+.....+..+++.+. .+.|+++|+||
T Consensus        76 ~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK  116 (116)
T PF01926_consen   76 QISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK  116 (116)
T ss_dssp             HHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred             HHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence            445599999999987755556677888886 78999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.84  E-value=3.3e-19  Score=136.92  Aligned_cols=138  Identities=47%  Similarity=0.747  Sum_probs=107.4

Q ss_pred             EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcccc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS  174 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (237)
                      |+++|.+|+|||||+|.|++.......+..+++|.....+.....+.+|||||+..........+.+......|+.....
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN   81 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence            78999999999999999995434466777778888877776677899999999877544444455566677777777667


Q ss_pred             ccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       175 ~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                      ++++++++|...........+.+++...+.|+++|+||+|+..+.+.......+...+
T Consensus        82 ~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l  139 (170)
T cd01876          82 LKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKEL  139 (170)
T ss_pred             hhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHH
Confidence            8999999998876667767778888888899999999999987766655555554443

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK00089 era GTPase Era; Reviewed

Probab=99.83  E-value=4.1e-19  Score=149.59  Aligned_cols=132  Identities=26%  Similarity=0.303  Sum_probs=97.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--EE-cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      -.|+++|.+|||||||+|+|++. ..+.+++.+.+|++...  .. .+..+.++||||+.++.  ....+   .+.....
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~--~~l~~---~~~~~~~   79 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK--RALNR---AMNKAAW   79 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch--hHHHH---HHHHHHH
Confidence            47899999999999999999998 66778888888876532  22 34689999999987532  11111   1222222


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC-ChHHHHHHHHHHHH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEE  230 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~-~~~~~~~~~~~l~~  230 (237)
                      .....+|++++|+|++..++..+..+++.+...+.|+++|+||+|+. +..+.....+.+.+
T Consensus        80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~  141 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSE  141 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHh
Confidence            33345999999999988777777778888877789999999999998 55555555555544

>PRK04213 GTP-binding protein; Provisional

Probab=99.82  E-value=7.2e-19  Score=140.10  Aligned_cols=126  Identities=32%  Similarity=0.536  Sum_probs=88.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCccc-chHHHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYV  169 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~~  169 (237)
                      ..++|+++|.+|||||||+|+|++..  ..++..+|+|.+......+ .+.+|||||++.... .....+.+......|+
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI   84 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence            45799999999999999999999874  4466778888876655445 699999999754211 1122334445555555


Q ss_pred             h-ccccccEEEEEEeCCCCC-----------ChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          170 S-TRVSLKRVCLLIDTKWGV-----------KPRDHELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       170 ~-~~~~~d~v~~vvd~~~~~-----------~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                      . ....++++++|+|+....           ...+..++..+...++|+++|+||+|+....
T Consensus        85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~  146 (201)
T PRK04213         85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR  146 (201)
T ss_pred             HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH
Confidence            4 445589999999985321           1223455666666789999999999997544

>PRK15494 era GTPase Era; Provisional

Probab=99.81  E-value=5.7e-19  Score=151.32  Aligned_cols=122  Identities=22%  Similarity=0.221  Sum_probs=90.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...+|+++|.+|||||||+|+|++. ....+++.+++|++...   ...+..+.+|||||+.+....  +.   ..+.+.
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~--l~---~~~~r~  124 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS--LE---KAMVRC  124 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc--HH---HHHHHH
Confidence            3469999999999999999999998 56778888888876532   234678999999998543211  11   122222


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      +......+|++++|+|+..++...+..+++.+...+.|+++|+||+|+...
T Consensus       125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~  175 (339)
T PRK15494        125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK  175 (339)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc
Confidence            223334499999999998877777777888887777899999999998643

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.81  E-value=1e-18  Score=154.99  Aligned_cols=139  Identities=27%  Similarity=0.286  Sum_probs=102.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|+|||||+|+|++. ....+++.+|+|++..   +...+..+.+|||||+..........+.+.  ...
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~--~~~  248 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS--VIR  248 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH--HHH
Confidence            4689999999999999999999998 4467888999998863   233477899999999865322111111111  111


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                      .+.....+|++++|+|+..+.+..+..++..+...+.|+++|+||+|+.+.+...+..+.+...+
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l  313 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRL  313 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhc
Confidence            12223348999999999999999888888888888899999999999986665555555555544

>cd01894 EngA1 EngA1 subfamily

Probab=99.81  E-value=1e-18  Score=132.99  Aligned_cols=120  Identities=25%  Similarity=0.357  Sum_probs=87.0

Q ss_pred             EEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        96 ~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      +++|.+|+|||||+|+|++. .....+..+++|++....   ..+..+.+|||||+.+...  ....   .+...+....
T Consensus         1 ~l~G~~~~GKssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~---~~~~~~~~~~   74 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGR-RDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISK---EIREQAELAI   74 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCC-cEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHH---HHHHHHHHHH
Confidence            47899999999999999998 445566777888765433   2367799999999875321  1111   1122222222


Q ss_pred             ccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHH
Q 026538          173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~  221 (237)
                      ..+|++++|+|+.++....+..+.+.+...+.|+++|+||+|+......
T Consensus        75 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~  123 (157)
T cd01894          75 EEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE  123 (157)
T ss_pred             HhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH
Confidence            3389999999998777777777788888888999999999999875543

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.81  E-value=8.7e-19  Score=156.60  Aligned_cols=121  Identities=24%  Similarity=0.368  Sum_probs=93.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      +.|+|+++|.+|||||||+|+|++. ....+.+.+|+|++.....   .+..+.+|||||+...  ...+...+......
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~--~~~~~~~~~~~~~~  113 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPD--AKGLQASVAEQAEV  113 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCc--chhHHHHHHHHHHH
Confidence            4589999999999999999999998 4467788999998865432   4678999999998631  11222223333333


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|++.+.+..+..+.+.+...++|+++|+||+|+..
T Consensus       114 ~~~~---aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~  160 (472)
T PRK03003        114 AMRT---ADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER  160 (472)
T ss_pred             HHHh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence            3333   9999999999988887788888888888999999999999864

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=1.4e-19  Score=155.72  Aligned_cols=184  Identities=21%  Similarity=0.205  Sum_probs=114.2

Q ss_pred             HHHhhcC-CCcceEEeecccccccCCCCCCCCCCC--hhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCC
Q 026538           26 VEDNLLG-RRRPIELRRAGYNIELSAPLDNIPFST--SSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSN  102 (237)
Q Consensus        26 ~~~~l~~-~~~~~~~~~~~~~~~l~~~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~  102 (237)
                      +....++ |..+|++.. .+++.+||.++.-....  .+....... +.......+.........  ...+.|+++|+||
T Consensus       203 ~~~l~~~~r~~lIe~~a-~l~a~idf~e~~~l~~~~t~~~~~~~~~-l~d~v~s~l~~~~~~e~l--q~gl~iaIvGrPN  278 (531)
T KOG1191|consen  203 ALALCFGWRKILIEALA-GLEARIDFEEERPLEEIETVEIFIESLS-LLDDVLSHLNKADEIERL--QSGLQIAIVGRPN  278 (531)
T ss_pred             hHHhhhhHHHHHHHHHh-ccceeechhhcCchhhccchhhhhHHHH-HHHHHHHHHHhhhhHHHh--hcCCeEEEEcCCC
Confidence            3444445 445556666 78888999764311111  111111111 001111122222222212  2458999999999


Q ss_pred             CchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEE
Q 026538          103 VGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVC  179 (237)
Q Consensus       103 ~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~  179 (237)
                      +|||||+|+|... +.+++++.+|||+|..   +...|.++.|+||+|+.+. ..+.++.   .-+.........+|+++
T Consensus       279 vGKSSLlNaL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~-~~~~iE~---~gI~rA~k~~~~advi~  353 (531)
T KOG1191|consen  279 VGKSSLLNALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE-SNDGIEA---LGIERARKRIERADVIL  353 (531)
T ss_pred             CCHHHHHHHHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc-cCChhHH---HhHHHHHHHHhhcCEEE
Confidence            9999999999999 7799999999999863   4445999999999999871 1221211   11223333334499999


Q ss_pred             EEEeCCCCCChhHHHHHHHHHhc------------CCcEEEEEecCCCCCh
Q 026538          180 LLIDTKWGVKPRDHELISLMERS------------QTKYQVVLTKTDTVFP  218 (237)
Q Consensus       180 ~vvd~~~~~~~~~~~~~~~l~~~------------~~piilv~NK~Dl~~~  218 (237)
                      +|+|+.......+..+.+.+...            ..|+++|.||.|+.++
T Consensus       354 ~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  354 LVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             EEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            99999766666666655555432            3689999999999754

>cd04171 SelB SelB subfamily

Probab=99.80  E-value=2.6e-18  Score=131.78  Aligned_cols=126  Identities=26%  Similarity=0.359  Sum_probs=81.1

Q ss_pred             EEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEE---c-CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~---~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +|+++|.+|||||||+|+|++.. ........+++|.+..+..   . +..+.+|||||...          +   ...+
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~----------~---~~~~   68 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK----------F---IKNM   68 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH----------H---HHHH
Confidence            68999999999999999999752 1111122345665543321   2 56899999999631          1   1112


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCC-cEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-piilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                      ......+|++++|+|+..++.......+..+...+. |+++|+||+|+..........+.+.+.+
T Consensus        69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~  133 (164)
T cd04171          69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELL  133 (164)
T ss_pred             HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHH
Confidence            222234999999999987655555555555554455 9999999999986544333444444443

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04163 Era Era subfamily

Probab=99.80  E-value=4.2e-18  Score=130.34  Aligned_cols=133  Identities=27%  Similarity=0.278  Sum_probs=92.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..+|+++|.+|+|||||+|+|++. ......+.+.+++....   ...+..+.+|||||+.......  ...+...   +
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~---~   76 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL--GERMVKA---A   76 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC-ceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH--HHHHHHH---H
Confidence            358999999999999999999998 44555665666654322   2235679999999987532211  1111111   1


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC-ChHHHHHHHHHHHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEE  230 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~-~~~~~~~~~~~l~~  230 (237)
                      ......+|++++|+|+..........+.+.+...+.|+++|+||+|+. .+.+..+..+.+..
T Consensus        77 ~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~  139 (168)
T cd04163          77 WSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKE  139 (168)
T ss_pred             HHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHh
Confidence            222333899999999987766666777777777789999999999998 45555555555544

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.80  E-value=9.2e-19  Score=154.96  Aligned_cols=120  Identities=25%  Similarity=0.347  Sum_probs=93.4

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      +|+++|.+|||||||+|+|++. ..+.+++.+|+|++....   ..+..+.+|||||+...  .+.+.+.+......++ 
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~--~~~~~~~~~~~~~~~~-   76 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGK-RDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED--DDGLDKQIREQAEIAI-   76 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCc--chhHHHHHHHHHHHHH-
Confidence            4899999999999999999998 456788999999876433   34778999999998542  2222232333333333 


Q ss_pred             ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                        ..+|++++|+|+..+++..+..+.+++...++|+++|+||+|+....
T Consensus        77 --~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~  123 (429)
T TIGR03594        77 --EEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED  123 (429)
T ss_pred             --hhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc
Confidence              34999999999998888888888999988899999999999987543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=3.5e-18  Score=141.06  Aligned_cols=149  Identities=25%  Similarity=0.299  Sum_probs=100.6

Q ss_pred             hhHHHHhhh-ccCCCCC--CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCC
Q 026538           74 KLEFFAAAK-VSSSFPA--PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPG  147 (237)
Q Consensus        74 ~~~~~~~~~-~~~~~~~--~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG  147 (237)
                      .+.++..++ ..+.+|.  ++.|.|++.|+||||||||++++++..  ..+.++|.||+.+...+.   +..+.+|||||
T Consensus       147 ~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPG  224 (346)
T COG1084         147 DLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPG  224 (346)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCc
Confidence            344444444 2344443  578999999999999999999999995  678999999999875543   56899999999


Q ss_pred             CCCcccchHHHHHHHHHHHHHHhcc-ccccEEEEEEeCCC--CCChh-HHHHHHHHHh-cCCcEEEEEecCCCCChHHHH
Q 026538          148 YGFAYAKEEVKDAWEELVKEYVSTR-VSLKRVCLLIDTKW--GVKPR-DHELISLMER-SQTKYQVVLTKTDTVFPIDVA  222 (237)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~v~~vvd~~~--~~~~~-~~~~~~~l~~-~~~piilv~NK~Dl~~~~~~~  222 (237)
                      +-+....+.     ..+-.+...++ .-.++|+|++|.+.  +.+-+ ...+++.+.. ...|+++|+||+|....+.+.
T Consensus       225 lLDRPl~Er-----N~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~  299 (346)
T COG1084         225 LLDRPLEER-----NEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLE  299 (346)
T ss_pred             ccCCChHHh-----cHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHH
Confidence            876321111     11111111111 11688999999875  33322 2456666654 367999999999998877776


Q ss_pred             HHHHHHH
Q 026538          223 RRAMQIE  229 (237)
Q Consensus       223 ~~~~~l~  229 (237)
                      +....+.
T Consensus       300 ~~~~~~~  306 (346)
T COG1084         300 EIEASVL  306 (346)
T ss_pred             HHHHHHH
Confidence            6555443

>cd01895 EngA2 EngA2 subfamily

Probab=99.80  E-value=3.3e-18  Score=132.03  Aligned_cols=138  Identities=28%  Similarity=0.284  Sum_probs=93.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|.+|+|||||+|+|++. ......+.+++|.+..   +...+..+.+|||||+.+........+.+.  ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~--~~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGE-ERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYS--VLRT   78 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCc-cceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHH--HHHH
Confidence            368999999999999999999987 3345566677765542   233467799999999865321111111111  0111


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh--HHHHHHHHHHHHHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEEVI  232 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~~~l  232 (237)
                      +.....+|++++|+|+..+.+.....++..+...+.|+++|+||+|+...  .......+.+++.+
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  144 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL  144 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhc
Confidence            22223489999999998877777777777777678999999999999866  44444455555443

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.80  E-value=3.3e-18  Score=151.46  Aligned_cols=139  Identities=25%  Similarity=0.274  Sum_probs=99.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|+|||||+|+|++. ....+++.+|+|++..   +...+..+.+|||||+..........+.+.  ...
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~--~~~  247 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS--VLR  247 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH--HHH
Confidence            4579999999999999999999998 4466788899998753   223467899999999865321111111111  011


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC-ChHHHHHHHHHHHHHH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEEVI  232 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~-~~~~~~~~~~~l~~~l  232 (237)
                      .......+|++++|+|+.++.+..+..++..+...+.|+++|+||+|+. +........+.+...+
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~  313 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKL  313 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhc
Confidence            1122234999999999999999988888888888889999999999998 4444455555555444

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.80  E-value=1.8e-18  Score=137.43  Aligned_cols=129  Identities=13%  Similarity=0.126  Sum_probs=91.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|.+|+|||||+|+|++..........+++|+.+...   ..+..+.++||||+.+.....  ......+...+.
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~--~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP--EQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh--HHHHHHHHHHHH
Confidence            379999999999999999999984322222345677765433   347789999999998753211  111233444444


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhc-----CCcEEEEEecCCCCChHHHHHH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARR  224 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~Dl~~~~~~~~~  224 (237)
                      ...+.+|++++|+|+.+ ++..+...++.+...     ..++++|+|++|.+...++.+.
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~  137 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDY  137 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHH
Confidence            44567899999999887 788888888877653     3689999999998865554444

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.80  E-value=1.7e-18  Score=150.50  Aligned_cols=130  Identities=20%  Similarity=0.230  Sum_probs=90.1

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .|+|+|.||||||||+|+|++..  ..+++.|+||+.......    +..+.++||||+.+......      .+...++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~------~Lg~~~l  232 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGA------GLGIRFL  232 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchh------hHHHHHH
Confidence            89999999999999999999884  578999999987654332    34699999999875422211      1222333


Q ss_pred             hccccccEEEEEEeCCC----CCChhHHHHHHHHHh-----cCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538          170 STRVSLKRVCLLIDTKW----GVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEEV  231 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~----~~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~~~~~~~~~~l~~~  231 (237)
                      .....++++++|+|++.    ........+++.+..     .+.|+++|+||+|+....+..+.++.+.+.
T Consensus       233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~  303 (390)
T PRK12298        233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA  303 (390)
T ss_pred             HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH
Confidence            34455999999999762    111222445555554     258999999999998766665555555443

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=2.3e-18  Score=153.85  Aligned_cols=136  Identities=21%  Similarity=0.204  Sum_probs=95.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|||||||+|+|++. ....+++.+|+|++..   +...+..+.+|||||+..........+.+..+.. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~-~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~-  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGE-ERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRT-  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHH-
Confidence            4689999999999999999999998 3456788999998753   3334677899999997542111100111111110 


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                       ......+|++++|+|++.+.+..+..++..+...++|+++|+||+|+..........+.+.
T Consensus       288 -~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~  348 (472)
T PRK03003        288 -HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREID  348 (472)
T ss_pred             -HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHH
Confidence             1112339999999999998888888888888878999999999999986443333333333

>cd01878 HflX HflX subfamily

Probab=99.79  E-value=3.5e-18  Score=136.49  Aligned_cols=125  Identities=19%  Similarity=0.211  Sum_probs=79.4

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---E-cCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---K-LGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ++.++|+++|++|||||||+|+|++..  ....+.+++|.+....   . ....+.+|||||+.+..... ....+....
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~  115 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQ-LVEAFRSTL  115 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcch--hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHH-HHHHHHHHH
Confidence            567899999999999999999999983  2333444444433221   1 23489999999985432221 112222222


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhHH----HHHHHHHhcCCcEEEEEecCCCCChHHH
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~----~~~~~l~~~~~piilv~NK~Dl~~~~~~  221 (237)
                      .    ....+|++++|+|++.+......    .++..+...++|+++|+||+|+.+....
T Consensus       116 ~----~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~  171 (204)
T cd01878         116 E----EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL  171 (204)
T ss_pred             H----HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH
Confidence            1    12238999999998865443332    2333333346899999999999765543

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.78  E-value=4.8e-18  Score=150.65  Aligned_cols=119  Identities=26%  Similarity=0.411  Sum_probs=91.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|.+|||||||+|+|++. ..+.+.+.+|+|++....   ..+..+.+|||||+...  .......+......++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~-~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~   78 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGK-RDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPD--DDGFEKQIREQAELAI   78 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCc--chhHHHHHHHHHHHHH
Confidence            68999999999999999999998 446778889998876433   23788999999998752  1112222222222222


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                         ..+|++++|+|+..+++..+..+.+++...+.|+++|+||+|+..
T Consensus        79 ---~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~  123 (435)
T PRK00093         79 ---EEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD  123 (435)
T ss_pred             ---HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence               339999999999988888888888888888999999999999754

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.78  E-value=7e-18  Score=130.28  Aligned_cols=123  Identities=24%  Similarity=0.238  Sum_probs=80.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHH-HHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWE-ELVKEY  168 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~-~~~~~~  168 (237)
                      |+|+++|.+|+|||||+|+|++..  ..+++.+++|.++....   .+..+.+|||||+.+......  ..+. .... .
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~~~-~   75 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEER--NTIEMQAIT-A   75 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCC--CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCC--chHHHHHHH-H
Confidence            589999999999999999999984  33455667777665433   246899999999854211110  0010 1111 1


Q ss_pred             HhccccccEEEEEEeCCCCCC---hhHHHHHHHHHhc--CCcEEEEEecCCCCChHHHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVK---PRDHELISLMERS--QTKYQVVLTKTDTVFPIDVA  222 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~---~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~~~  222 (237)
                      ..  ...|++++|+|++....   .....++..+...  +.|+++|+||+|+....+..
T Consensus        76 ~~--~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~  132 (168)
T cd01897          76 LA--HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLS  132 (168)
T ss_pred             HH--hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHH
Confidence            11  11588999999876432   2224566666554  79999999999998655543

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01889 SelB_euk SelB subfamily

Probab=99.78  E-value=5.7e-18  Score=134.10  Aligned_cols=126  Identities=22%  Similarity=0.325  Sum_probs=85.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccc-----eeeccCCCCceEEEEEE---E--------------cCCeEEEEeCCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWG-----VVRTSDKPGLTQTINFF---K--------------LGTKLCLVDLPGYGF  150 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~-----~~~~~~~~g~t~~~~~~---~--------------~~~~~~liDTpG~~~  150 (237)
                      ++|+++|++|+|||||+++|++...     .......+|+|.+..+.   .              .+..+.+|||||+. 
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-   79 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-   79 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence            4799999999999999999997311     11223345666654321   1              15679999999963 


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                                  .+...++.....+|++++|+|+..+......+.+......+.|+++|+||+|+....+.....+.+++
T Consensus        80 ------------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~  147 (192)
T cd01889          80 ------------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKK  147 (192)
T ss_pred             ------------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence                        23334444444489999999998876665555455555567899999999999866555444555544


Q ss_pred             H
Q 026538          231 V  231 (237)
Q Consensus       231 ~  231 (237)
                      .
T Consensus       148 ~  148 (192)
T cd01889         148 K  148 (192)
T ss_pred             H
Confidence            3

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01898 Obg Obg subfamily

Probab=99.78  E-value=1.3e-18  Score=134.62  Aligned_cols=125  Identities=18%  Similarity=0.176  Sum_probs=79.7

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCC-eEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      +|+++|.+|||||||+|+|.+..  ..++..+++|.+...   ...+. .+.+|||||+.+.....      ..+...++
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~   73 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG------KGLGHRFL   73 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc------CCchHHHH
Confidence            68999999999999999999873  345566666655422   12244 89999999985421111      01122222


Q ss_pred             hccccccEEEEEEeCCCC-CChh-HHHHHHHHHh-----cCCcEEEEEecCCCCChHHHHHHHH
Q 026538          170 STRVSLKRVCLLIDTKWG-VKPR-DHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAM  226 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~-~~~~-~~~~~~~l~~-----~~~piilv~NK~Dl~~~~~~~~~~~  226 (237)
                      .....+|++++|+|++.. -... ...+.+.+..     .+.|+++|+||+|+.+.....+..+
T Consensus        74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~  137 (170)
T cd01898          74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLK  137 (170)
T ss_pred             HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHH
Confidence            223348999999998764 1211 2234444432     2689999999999977655544433

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.77  E-value=1.1e-17  Score=156.08  Aligned_cols=123  Identities=24%  Similarity=0.382  Sum_probs=95.2

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ...++|+++|.+|||||||+|+|++. ..+.+++.+|+|++.....   .+..+.+|||||+...  ...+...+.....
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~  349 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEAD--VEGIDSAIASQAQ  349 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCC--CccHHHHHHHHHH
Confidence            34579999999999999999999998 5577889999999875443   3678999999998642  1122222222222


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      .++.   .+|++++|+|+..++...+..+.+.+...++|+++|+||+|+...
T Consensus       350 ~~~~---~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~  398 (712)
T PRK09518        350 IAVS---LADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS  398 (712)
T ss_pred             HHHH---hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc
Confidence            3333   399999999999888888888888888889999999999998643

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.77  E-value=1.2e-17  Score=127.05  Aligned_cols=119  Identities=26%  Similarity=0.309  Sum_probs=83.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|++|+|||||+|++++. .....++.+++|.+....   ..+..+.+|||||+.+....  .....   .....
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~---~~~~~   75 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE--IEKIG---IERAR   75 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch--HHHHH---HHHHH
Confidence            58999999999999999999998 455667788888765422   23568999999998653211  11110   11111


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                      .....+|++++|+|+.......+...+..  ..+.|+++|+||+|+.+..
T Consensus        76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~  123 (157)
T cd04164          76 EAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDS  123 (157)
T ss_pred             HHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcc
Confidence            12223899999999987666666555444  4579999999999997544

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.77  E-value=1.6e-17  Score=128.12  Aligned_cols=110  Identities=23%  Similarity=0.361  Sum_probs=79.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE------cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      |.|+++|.+|+|||||+|+|++..  ......+++|.+.....      .+..+.+|||||...          +..+..
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~   68 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTN--VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA----------FTNMRA   68 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhcc--cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH----------HHHHHH
Confidence            579999999999999999999873  22334455666553221      256799999999642          111222


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      .++   ..+|++++|+|++.+........+..+...++|+++|+||+|+..
T Consensus        69 ~~~---~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~  116 (168)
T cd01887          69 RGA---SLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPN  116 (168)
T ss_pred             HHH---hhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccc
Confidence            222   238999999999877666666667777778899999999999874

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.77  E-value=1.7e-17  Score=154.91  Aligned_cols=137  Identities=21%  Similarity=0.222  Sum_probs=97.6

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ...++|+++|.+|||||||+|+|++. ....+++.+|+|++..   +...+..+.+|||||+........-.+.+.. .+
T Consensus       448 ~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~-~r  525 (712)
T PRK09518        448 SGLRRVALVGRPNVGKSSLLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSS-LR  525 (712)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHH-HH
Confidence            35689999999999999999999998 4456788899998763   3335778999999998642111110111111 11


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                       .......+|++++|+|++.+.+..+..++..+...++|+++|+||+|+.+..........+.
T Consensus       526 -~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~  587 (712)
T PRK09518        526 -TQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWK  587 (712)
T ss_pred             -HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHH
Confidence             11223349999999999999888888888888778899999999999986544333333333

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.76  E-value=9.9e-18  Score=131.52  Aligned_cols=127  Identities=21%  Similarity=0.287  Sum_probs=86.8

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeec--------------cCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRT--------------SDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEE  156 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~--------------~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~  156 (237)
                      +|+++|.+|+|||||+|+|++.......              ....++|.+..   ....+..+.+|||||+.+      
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------   74 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------   74 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence            4899999999999999999987421111              01123343332   222356799999999743      


Q ss_pred             HHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                          +......++.   .+|++++|+|+.++.......++..+...+.|+++|+||+|+..+.+.....+.+++.++
T Consensus        75 ----~~~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~  144 (189)
T cd00881          75 ----FSSEVIRGLS---VSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLG  144 (189)
T ss_pred             ----HHHHHHHHHH---hcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHc
Confidence                1112222222   399999999998877777777777777778999999999999876655555555555543

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.76  E-value=1.3e-17  Score=145.76  Aligned_cols=116  Identities=17%  Similarity=0.171  Sum_probs=83.5

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .|+|+|.||||||||+|+|++..  ..+++.|+||....+...    +..+.++||||+.+....      +..+...|+
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~------~~gLg~~fL  231 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE------GVGLGHQFL  231 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc------cchHHHHHH
Confidence            99999999999999999999884  456788999988764432    578999999998653221      123344455


Q ss_pred             hccccccEEEEEEeCCCC----CChhHHHHHHHHHh-----cCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWG----VKPRDHELISLMER-----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~----~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~  217 (237)
                      .....++++++|+|++..    .......+.+++..     .++|+++|+||+|+..
T Consensus       232 rhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~  288 (424)
T PRK12297        232 RHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE  288 (424)
T ss_pred             HHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence            555569999999998642    11122344455543     3689999999999853

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.76  E-value=2e-17  Score=130.56  Aligned_cols=127  Identities=25%  Similarity=0.406  Sum_probs=91.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceee----------------ccCCCCceE---EEEEE--EcCCeEEEEeCCCCCC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR----------------TSDKPGLTQ---TINFF--KLGTKLCLVDLPGYGF  150 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~----------------~~~~~g~t~---~~~~~--~~~~~~~liDTpG~~~  150 (237)
                      .++|+++|+.++|||||+++|+.......                .....+.|.   ...+.  ..+..++++||||+.+
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~   82 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED   82 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence            46899999999999999999996531100                001122332   23344  4578899999999732


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                                   +..........+|++++|+|+..++.....+.+..+...++|+++|+||+|+. ..+..+..+++..
T Consensus        83 -------------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~  148 (188)
T PF00009_consen   83 -------------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKE  148 (188)
T ss_dssp             -------------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHH
T ss_pred             -------------eeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch-hhhHHHHHHHHHH
Confidence                         22233333445999999999999999999999999999999999999999998 5556666666664


Q ss_pred             HH
Q 026538          231 VI  232 (237)
Q Consensus       231 ~l  232 (237)
                      .+
T Consensus       149 ~l  150 (188)
T PF00009_consen  149 KL  150 (188)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.76  E-value=2.4e-17  Score=130.79  Aligned_cols=128  Identities=19%  Similarity=0.304  Sum_probs=91.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccc---------e-----eeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccch
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWG---------V-----VRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKE  155 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~---------~-----~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~  155 (237)
                      .+|+++|+.++|||||+++|+....         .     ......+|+|.+....   ..+..+.++||||+.      
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~------   76 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA------   76 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH------
Confidence            5899999999999999999986410         0     0011145666665322   236679999999973      


Q ss_pred             HHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHH-HHHHHHHHHH
Q 026538          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEEVIF  233 (237)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~-~~~~l~~~l~  233 (237)
                             .+..........+|++++|+|+..++...+...+..+...++| +++|+||+|+....+..+ ..+++.+.+.
T Consensus        77 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~  149 (195)
T cd01884          77 -------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLS  149 (195)
T ss_pred             -------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence                   2333334444559999999999988888888899998888887 789999999975444333 4455666554

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.75  E-value=1.8e-17  Score=141.24  Aligned_cols=131  Identities=18%  Similarity=0.200  Sum_probs=87.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cC-CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LG-TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...|+++|.+|||||||+|+|++..  ..+++.++||.......   .+ ..+.+|||||+.+.....      ..+...
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~  228 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG------AGLGHR  228 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc------ccHHHH
Confidence            3689999999999999999999874  45778888887654322   23 689999999986532211      112233


Q ss_pred             HHhccccccEEEEEEeCCCC---CC-hhHHHHHHHHHh-----cCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          168 YVSTRVSLKRVCLLIDTKWG---VK-PRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~---~~-~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                      |++....++++++|+|++..   -. .....+.+++..     .+.|+++|+||+|+.......+..+.+.+
T Consensus       229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~  300 (329)
T TIGR02729       229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK  300 (329)
T ss_pred             HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH
Confidence            33334449999999998743   11 111233344432     36899999999999876555555444443

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.75  E-value=1.7e-17  Score=126.56  Aligned_cols=124  Identities=22%  Similarity=0.243  Sum_probs=83.0

Q ss_pred             EecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538           97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (237)
Q Consensus        97 lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      ++|.+|+|||||+|++++..  ...+..+++|.+..   +...+..+.+|||||+.+......    ...+...++.. .
T Consensus         1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~-~   73 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLG-E   73 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcC-C
Confidence            57999999999999999873  45566777777653   222356799999999764221110    11233444443 4


Q ss_pred             cccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                      .+|++++|+|+...  .....+...+...++|+++|+||+|+.+........+.+.
T Consensus        74 ~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~  127 (158)
T cd01879          74 KPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLS  127 (158)
T ss_pred             CCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHH
Confidence            59999999998753  2334455566667899999999999976543333333333

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.75  E-value=2.7e-17  Score=140.35  Aligned_cols=121  Identities=19%  Similarity=0.221  Sum_probs=85.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...|+|+|.||||||||+|+|++..  ..+++.++||.......    .+..+.+|||||+.+.....      ..+...
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~  229 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG------AGLGHR  229 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc------ccHHHH
Confidence            3689999999999999999999873  55788899998765432    34679999999986532221      122234


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-----cCCcEEEEEecCCCCChHH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~piilv~NK~Dl~~~~~  220 (237)
                      |++..+.++++++|+|++..-...+ ..+.+.+..     .++|+++|+||+|+.+..+
T Consensus       230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~  288 (335)
T PRK12299        230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEE  288 (335)
T ss_pred             HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchh
Confidence            4444455999999999875322222 344455543     2689999999999976544

>cd01850 CDC_Septin CDC/Septin

Probab=99.74  E-value=1.3e-16  Score=133.10  Aligned_cols=138  Identities=23%  Similarity=0.388  Sum_probs=91.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccC--------CCCce-EEE---EEEEcC--CeEEEEeCCCCCCcccchHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPGLT-QTI---NFFKLG--TKLCLVDLPGYGFAYAKEEV  157 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~--------~~g~t-~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~  157 (237)
                      .++|+++|.+|+|||||+|+|++.. ......        ...++ ...   .....+  ..+.+|||||+++...... 
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~-~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~-   81 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTK-LIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD-   81 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCC-CccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh-
Confidence            4689999999999999999999883 332221        12222 111   111123  4699999999987533221 


Q ss_pred             HHHHHHHH-------HHHHh-----------ccccccEEEEEEeCC-CCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          158 KDAWEELV-------KEYVS-----------TRVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       158 ~~~~~~~~-------~~~~~-----------~~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                        .|..+.       ..|+.           ....+|+++|++++. +++...+.++++.+.. ++|+++|+||+|++..
T Consensus        82 --~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~  158 (276)
T cd01850          82 --CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTP  158 (276)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCH
Confidence              122111       11111           111378899999876 4788888899999886 7999999999999988


Q ss_pred             HHHHHHHHHHHHHHHh
Q 026538          219 IDVARRAMQIEEVIFY  234 (237)
Q Consensus       219 ~~~~~~~~~l~~~l~~  234 (237)
                      .+.....+.+.+.+..
T Consensus       159 ~e~~~~k~~i~~~l~~  174 (276)
T cd01850         159 EELKEFKQRIMEDIEE  174 (276)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777777766553

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.74  E-value=1.4e-16  Score=130.62  Aligned_cols=128  Identities=23%  Similarity=0.203  Sum_probs=88.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ....+|+++|.+|+|||||+|+|++. ....++...++|.....+.   .+..+.+|||||+.+........+.....+.
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~-~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~  107 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGE-RKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK  107 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence            35579999999999999999999998 4456667767777665433   3678999999999875322222222233344


Q ss_pred             HHHhccccccEEEEEEeCC-CCCChhHHHHHHHHHhc-----CCcEEEEEecCCCCChH
Q 026538          167 EYVSTRVSLKRVCLLIDTK-WGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~-----~~piilv~NK~Dl~~~~  219 (237)
                      .|+... ..++++||.... ..+...+..+++.+...     ..++++|+||+|..++.
T Consensus       108 ~~l~~~-~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         108 RYLKKK-TPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHhcc-CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            455432 378888887544 35566777777777642     35799999999997544

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.74  E-value=4.9e-17  Score=130.45  Aligned_cols=110  Identities=19%  Similarity=0.235  Sum_probs=75.8

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeecc------------------------------CCCCceEEEEE---EEcCCeE
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS------------------------------DKPGLTQTINF---FKLGTKL  140 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~------------------------------~~~g~t~~~~~---~~~~~~~  140 (237)
                      +|+++|++|+|||||+++|+...+. +.+                              ..+|+|.+...   ...+..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKS-IFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence            5899999999999999999865321 110                              12566766532   2347789


Q ss_pred             EEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCC-cEEEEEecCCCCC
Q 026538          141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVF  217 (237)
Q Consensus       141 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-piilv~NK~Dl~~  217 (237)
                      .+|||||+.+             +..........+|++++|+|+..++..........+...+. ++++|+||+|+..
T Consensus        80 ~liDTpG~~~-------------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~  144 (208)
T cd04166          80 IIADTPGHEQ-------------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD  144 (208)
T ss_pred             EEEECCcHHH-------------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence            9999999632             11111222334999999999988876666666666666564 4788999999874

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.73  E-value=2.7e-17  Score=132.76  Aligned_cols=132  Identities=41%  Similarity=0.607  Sum_probs=114.5

Q ss_pred             CCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccC-CCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538           85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (237)
Q Consensus        85 ~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~  163 (237)
                      ...|+.+.|.++++|.+|+|||||||.++........+. .+|-|+.++.+..+..+.++|.||++.+.-..+....|..
T Consensus       129 ~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  129 EDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             ccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhH
Confidence            345567789999999999999999999998754443333 8899999999999999999999997765445555677889


Q ss_pred             HHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +...|+..+...-.+++++|++.+++..|...++++.+.++|+.+|+||||..
T Consensus       209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~  261 (320)
T KOG2486|consen  209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ  261 (320)
T ss_pred             hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh
Confidence            99999999988889999999999999999999999999999999999999975

>cd01890 LepA LepA subfamily

Probab=99.73  E-value=8e-17  Score=125.68  Aligned_cols=111  Identities=21%  Similarity=0.229  Sum_probs=73.6

Q ss_pred             EEEEecCCCCchhhHHHHHhccccee-------ec------cCCCCceEEEE---EE-----EcCCeEEEEeCCCCCCcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVV-------RT------SDKPGLTQTIN---FF-----KLGTKLCLVDLPGYGFAY  152 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~-------~~------~~~~g~t~~~~---~~-----~~~~~~~liDTpG~~~~~  152 (237)
                      +|+++|.+|+|||||+++|++.....       ..      ....|+|....   ..     ..+..+.+|||||+.+  
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--   79 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD--   79 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence            79999999999999999999742100       00      11223443321   11     1245688999999753  


Q ss_pred             cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                              +......++..   +|++++|+|++.+....+...+..+...++|+++|+||+|+..
T Consensus        80 --------~~~~~~~~~~~---ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~  133 (179)
T cd01890          80 --------FSYEVSRSLAA---CEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPS  133 (179)
T ss_pred             --------hHHHHHHHHHh---cCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCc
Confidence                    12223333333   9999999999877665555555555556899999999999864

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.73  E-value=1.2e-16  Score=126.76  Aligned_cols=111  Identities=26%  Similarity=0.296  Sum_probs=77.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeecc---------------CCCCceEEE---EEEEcCCeEEEEeCCCCCCcccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS---------------DKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK  154 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~---------------~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~  154 (237)
                      .+|+++|.+|+|||||+++|+.... ....               ...|+|...   .+...+..+.+|||||+.+    
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~----   77 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSG-TFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD----   77 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcC-CCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH----
Confidence            5899999999999999999996311 1111               113344332   2334467899999999643    


Q ss_pred             hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                            +......++..   +|++++|+|+..+.......++..+...++|+++|+||+|+..
T Consensus        78 ------~~~~~~~~~~~---~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~  131 (194)
T cd01891          78 ------FGGEVERVLSM---VDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPD  131 (194)
T ss_pred             ------HHHHHHHHHHh---cCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence                  22233334433   8999999999876555555666666667899999999999964

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.72  E-value=7.2e-17  Score=150.64  Aligned_cols=133  Identities=19%  Similarity=0.174  Sum_probs=92.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCccc--c-hHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYA--K-EEVKDAWEELVK  166 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~--~-~~~~~~~~~~~~  166 (237)
                      ++|+++|.+|||||||+|+|++..  ..+++.+|+|.+...   ...+..+.++||||+.+-..  . ....   +....
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~   78 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD---EQIAC   78 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHH---HHHHH
Confidence            589999999999999999999984  467888999987643   33467899999999754211  0 1111   11223


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      .|+. ...+|++++|+|+++.  +....+..++.+.++|+++|+||+|+.+........+.+++.++
T Consensus        79 ~~l~-~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG  142 (772)
T PRK09554         79 HYIL-SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLG  142 (772)
T ss_pred             HHHh-ccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhC
Confidence            3333 2348999999998764  33445666777789999999999998755444444555555443

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.72  E-value=9.1e-17  Score=142.38  Aligned_cols=122  Identities=20%  Similarity=0.207  Sum_probs=82.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ...|+|+|.||||||||+|+|++..  ..+++.|+||.......   .+..+.++||||+.+.....      ..+...+
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g------~gLg~~f  230 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG------KGLGLDF  230 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchh------hHHHHHH
Confidence            4689999999999999999999884  45688899998764432   35689999999986532211      1222334


Q ss_pred             HhccccccEEEEEEeCCCCC----ChhH-HHHHHHH--------------HhcCCcEEEEEecCCCCChHHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGV----KPRD-HELISLM--------------ERSQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~----~~~~-~~~~~~l--------------~~~~~piilv~NK~Dl~~~~~~  221 (237)
                      +.....++++++|+|++...    ...+ ..+.+.+              ...+.|+++|+||+|+....+.
T Consensus       231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el  302 (500)
T PRK12296        231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL  302 (500)
T ss_pred             HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH
Confidence            44445599999999986411    0111 1122222              1236899999999999755443

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.72  E-value=4.5e-16  Score=125.64  Aligned_cols=126  Identities=18%  Similarity=0.255  Sum_probs=84.6

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccC---------------CCCceEEE---EEEEc----------CCeEEEEeC
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQTI---NFFKL----------GTKLCLVDL  145 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~---------------~~g~t~~~---~~~~~----------~~~~~liDT  145 (237)
                      +|+++|+.++|||||+++|+...+. ....               ..|.|...   .....          +..+.+|||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGI-ISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCC-CccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            7999999999999999999865321 1111               11222211   11111          567899999


Q ss_pred             CCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC------ChH
Q 026538          146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV------FPI  219 (237)
Q Consensus       146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~------~~~  219 (237)
                      ||+.+          +......++.   .+|++++|+|+..+.......+++.+...++|+++|+||+|+.      +++
T Consensus        81 PG~~~----------f~~~~~~~l~---~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~  147 (222)
T cd01885          81 PGHVD----------FSSEVTAALR---LCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPE  147 (222)
T ss_pred             CCccc----------cHHHHHHHHH---hcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHH
Confidence            99864          1112222222   2999999999999888888888888777789999999999985      555


Q ss_pred             HHHHHHHHHHHHHH
Q 026538          220 DVARRAMQIEEVIF  233 (237)
Q Consensus       220 ~~~~~~~~l~~~l~  233 (237)
                      +....+..+-+.++
T Consensus       148 ~~~~~~~~ii~~~n  161 (222)
T cd01885         148 EAYQRLARIIEQVN  161 (222)
T ss_pred             HHHHHHHHHHHHHh
Confidence            55554444444443

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.71  E-value=2.5e-16  Score=128.65  Aligned_cols=127  Identities=23%  Similarity=0.275  Sum_probs=88.1

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceee----cc------------CCCCceEEE---EEEEcCCeEEEEeCCCCCCcccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVR----TS------------DKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK  154 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~----~~------------~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~  154 (237)
                      +|+++|++|+|||||+++|+...+...    +.            ...+.|...   .+...+..+.+|||||+.+-   
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f---   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF---   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence            589999999999999999986522100    00            011222222   23345778999999998541   


Q ss_pred             hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 026538          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFY  234 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~  234 (237)
                             ......++..   +|++++|+|+..+.......+++.+...++|+++|+||+|+... +..+.++.+++.++.
T Consensus        78 -------~~~~~~~l~~---aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a-~~~~~~~~i~~~~~~  146 (237)
T cd04168          78 -------IAEVERSLSV---LDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGA-DLEKVYQEIKEKLSS  146 (237)
T ss_pred             -------HHHHHHHHHH---hCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCC-CHHHHHHHHHHHHCC
Confidence                   1112223322   89999999999888877778888888889999999999998754 345677777776653

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04154 Arl2 Arl2 subfamily

Probab=99.71  E-value=2e-16  Score=123.03  Aligned_cols=113  Identities=19%  Similarity=0.225  Sum_probs=72.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ..++|+++|++|||||||+++|++. ......+..|..... +...+..+.+|||||...          +..+...++.
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~-~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~   80 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKT-LEYEGYKLNIWDVGGQKT----------LRPYWRNYFE   80 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEE-EEECCEEEEEEECCCCHH----------HHHHHHHHhC
Confidence            4579999999999999999999987 333333333322211 122367789999999532          1223334443


Q ss_pred             ccccccEEEEEEeCCCCCC--hhHHHHHHHHH---hcCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVK--PRDHELISLME---RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~--~~~~~~~~~l~---~~~~piilv~NK~Dl~~~  218 (237)
                      .   +|++++|+|+...-+  .....+...+.   ..+.|+++|+||+|+...
T Consensus        81 ~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  130 (173)
T cd04154          81 S---TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA  130 (173)
T ss_pred             C---CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence            3   899999999876421  11112222222   247899999999998753

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>CHL00071 tufA elongation factor Tu

Probab=99.71  E-value=3.9e-16  Score=137.20  Aligned_cols=130  Identities=20%  Similarity=0.287  Sum_probs=92.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccce--------------eeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYA  153 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~--------------~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~  153 (237)
                      ...+|+++|++++|||||+|+|++....              ......+|+|.+....   ..+..+.++||||+.    
T Consensus        11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~----   86 (409)
T CHL00071         11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA----   86 (409)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence            4469999999999999999999975210              0111236777775322   235678999999963    


Q ss_pred             chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHH-HHHHHHHH
Q 026538          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEEV  231 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~-~~~~l~~~  231 (237)
                               .++.........+|++++|+|+..++..++.+.+..+...++| +++|+||+|+.+.++..+ ..+++.+.
T Consensus        87 ---------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~  157 (409)
T CHL00071         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVREL  157 (409)
T ss_pred             ---------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence                     1222333333449999999999999888888999988888999 778999999987555433 33455555


Q ss_pred             HH
Q 026538          232 IF  233 (237)
Q Consensus       232 l~  233 (237)
                      +.
T Consensus       158 l~  159 (409)
T CHL00071        158 LS  159 (409)
T ss_pred             HH
Confidence            54

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.71  E-value=2.9e-16  Score=130.48  Aligned_cols=126  Identities=19%  Similarity=0.206  Sum_probs=87.5

Q ss_pred             EEEEecCCCCchhhHHHHHhcccce----eecc------------CCCCceEEE---EEEEcCCeEEEEeCCCCCCcccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGV----VRTS------------DKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK  154 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~----~~~~------------~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~  154 (237)
                      +|+++|++|+|||||+++|+...+.    ..+.            ..+|+|.+.   .+.+.+..+.+|||||+.+    
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d----   76 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD----   76 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence            5899999999999999999743210    0111            234555553   3344578899999999743    


Q ss_pred             hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                        ..    .....++   ..+|++++|+|+..++...+..+++.+...++|+++++||+|+... +.....+.+++.++
T Consensus        77 --f~----~~~~~~l---~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a-~~~~~~~~l~~~l~  145 (270)
T cd01886          77 --FT----IEVERSL---RVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGA-DFFRVVEQIREKLG  145 (270)
T ss_pred             --HH----HHHHHHH---HHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHhC
Confidence              11    1112222   2389999999999988888888888888889999999999998743 23345555655554

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.70  E-value=2.7e-16  Score=120.43  Aligned_cols=110  Identities=18%  Similarity=0.281  Sum_probs=69.4

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      +|+++|.+|||||||+|++.+.. .....+..+.+...........+.+|||||...      ....|    ..++..  
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~------~~~~~----~~~~~~--   67 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAE-LVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEK------MRTVW----KCYLEN--   67 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-cccccCccCcceEEEEeCCceEEEEEECCCCHh------HHHHH----HHHhcc--
Confidence            48999999999999999999884 222223233222222222346799999999632      22222    233333  


Q ss_pred             cccEEEEEEeCCCCCC--hhHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          174 SLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       174 ~~d~v~~vvd~~~~~~--~~~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                       +|++++|+|+++..+  .....+...+..   .+.|+++|+||+|+..
T Consensus        68 -~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  115 (160)
T cd04156          68 -TDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG  115 (160)
T ss_pred             -CCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence             899999999876431  222223333322   4789999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.70  E-value=6.7e-16  Score=140.78  Aligned_cols=126  Identities=25%  Similarity=0.377  Sum_probs=91.6

Q ss_pred             EEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      +|+++|++|+|||||+|+|++.. +.......+|.|.++.+..   .+..+.+|||||+.             .+...+.
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------------~f~~~~~   68 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------------KFISNAI   68 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------------HHHHHHH
Confidence            68999999999999999999752 1011233467787765433   25678999999963             2333333


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                      .....+|++++|+|+..++..+..+.+..+...++| +++|+||+|+.+.+......+++++.+
T Consensus        69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l  132 (581)
T TIGR00475        69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQIL  132 (581)
T ss_pred             hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            334449999999999988878888888778778898 999999999987765544444554443

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.69  E-value=3.2e-16  Score=124.67  Aligned_cols=116  Identities=22%  Similarity=0.202  Sum_probs=76.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeecc---CCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~---~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ++|+++|.+|+|||||+|+|++........   ....+|.....+..  ...+.+|||||+.+....  .+    .+...
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~--~~----~~l~~   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFP--PD----DYLEE   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCC--HH----HHHHH
Confidence            589999999999999999999863111111   11123333333322  346899999998763221  11    11111


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      .  ....+|+++++.+  .+++..+..+++.+...+.|+++|+||+|+..+
T Consensus        76 ~--~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~  122 (197)
T cd04104          76 M--KFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLS  122 (197)
T ss_pred             h--CccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhh
Confidence            1  1233788888754  357788888999998889999999999999643

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.69  E-value=7.2e-17  Score=125.27  Aligned_cols=119  Identities=23%  Similarity=0.264  Sum_probs=75.4

Q ss_pred             EecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEc-CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        97 lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      ++|++|||||||+|+|++.. . .++..+++|.+...   ... +..+.+|||||+.+.....      ..+...+....
T Consensus         1 iiG~~~~GKStll~~l~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~------~~~~~~~~~~~   72 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAK-P-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG------RGLGNQFLAHI   72 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCC-c-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC------CCccHHHHHHH
Confidence            58999999999999999983 2 45667777766532   223 7889999999985421111      01111122222


Q ss_pred             ccccEEEEEEeCCCCC-----Ch-hH-HHHHHHHH----------hcCCcEEEEEecCCCCChHHHHH
Q 026538          173 VSLKRVCLLIDTKWGV-----KP-RD-HELISLME----------RSQTKYQVVLTKTDTVFPIDVAR  223 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~-----~~-~~-~~~~~~l~----------~~~~piilv~NK~Dl~~~~~~~~  223 (237)
                      ..+|++++|+|+....     .. .. ..+...+.          ..+.|+++|+||+|+........
T Consensus        73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~  140 (176)
T cd01881          73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEE  140 (176)
T ss_pred             hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHH
Confidence            3389999999987652     11 11 12222222          13689999999999986655443

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd00880 Era_like Era (E

Probab=99.69  E-value=8.4e-16  Score=116.28  Aligned_cols=121  Identities=26%  Similarity=0.320  Sum_probs=83.4

Q ss_pred             EecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        97 lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      ++|++|+|||||+|+|++. .....+..+++|........    +..+.+|||||+.+.......   +......++.. 
T Consensus         1 i~G~~gsGKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~~~~-   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---REELARRVLER-   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh---HHHHHHHHHHh-
Confidence            5799999999999999987 33445566666655432221    568999999998764222210   11122222222 


Q ss_pred             ccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHH
Q 026538          173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR  224 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~  224 (237)
                        +|++++++|+..........+.......+.|+++|+||+|+..+.+....
T Consensus        76 --~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~  125 (163)
T cd00880          76 --ADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEEL  125 (163)
T ss_pred             --CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHH
Confidence              89999999998776665555566666678999999999999877655443

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04157 Arl6 Arl6 subfamily

Probab=99.69  E-value=5.2e-16  Score=118.92  Aligned_cols=111  Identities=18%  Similarity=0.249  Sum_probs=71.4

Q ss_pred             EEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      +|+++|.+|||||||+++|.+.. ......+..|.+... +...+..+.+|||||...          +..+...|+.. 
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~-   68 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-FEKGNLSFTAFDMSGQGK----------YRGLWEHYYKN-   68 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-EEECCEEEEEEECCCCHh----------hHHHHHHHHcc-
Confidence            48999999999999999999863 122333444433322 233467799999999642          22233344433 


Q ss_pred             ccccEEEEEEeCCCCCChhH-HHHHHHH-H-----hcCCcEEEEEecCCCCCh
Q 026538          173 VSLKRVCLLIDTKWGVKPRD-HELISLM-E-----RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~-----~~~~piilv~NK~Dl~~~  218 (237)
                        +|++++|+|++...+... ..++..+ .     ..++|+++|+||+|+...
T Consensus        69 --~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~  119 (162)
T cd04157          69 --IQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA  119 (162)
T ss_pred             --CCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence              999999999886432211 1222222 1     236899999999998753

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.69  E-value=7e-16  Score=123.27  Aligned_cols=125  Identities=20%  Similarity=0.291  Sum_probs=76.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-----cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      |+|+++|++|||||||++.|.....   ....+.++.......     .+..+.+|||||+..      ..    .....
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~~---~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~------~~----~~~~~   67 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGKY---RSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPK------LR----DKLLE   67 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCC---CCccCcEeecceEEEeecCCCCceEEEEECCCCHH------HH----HHHHH
Confidence            5799999999999999999998731   111222222222211     256799999999743      11    22223


Q ss_pred             HHhccccc-cEEEEEEeCCCCCChhH--HHH-HHHHH-----hcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          168 YVSTRVSL-KRVCLLIDTKWGVKPRD--HEL-ISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       168 ~~~~~~~~-d~v~~vvd~~~~~~~~~--~~~-~~~l~-----~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      ++..   + ++++||+|+........  ..+ ...+.     ..++|+++|+||+|+..........+.+++.+.
T Consensus        68 ~~~~---~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~  139 (203)
T cd04105          68 TLKN---SAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELN  139 (203)
T ss_pred             HHhc---cCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHH
Confidence            3333   5 99999999876421111  112 22221     137999999999999765544455555555443

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd04169 RF3 RF3 subfamily

Probab=99.69  E-value=1.1e-15  Score=126.84  Aligned_cols=127  Identities=20%  Similarity=0.229  Sum_probs=83.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccccee----ec----------cCC------CCce---EEEEEEEcCCeEEEEeCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVV----RT----------SDK------PGLT---QTINFFKLGTKLCLVDLPGYG  149 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~----~~----------~~~------~g~t---~~~~~~~~~~~~~liDTpG~~  149 (237)
                      .+|+++|++|+|||||+++|+...+..    .+          .+.      .+.+   ....+.+.+..+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            589999999999999999998542110    00          010      1111   112344457889999999974


Q ss_pred             CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                      +      .    ......++.   .+|++++|+|+..++......+++.+...++|+++++||+|+.... ..+.+++++
T Consensus        83 d------f----~~~~~~~l~---~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~l~  148 (267)
T cd04169          83 D------F----SEDTYRTLT---AVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD-PLELLDEIE  148 (267)
T ss_pred             H------H----HHHHHHHHH---HCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC-HHHHHHHHH
Confidence            3      1    111112222   2899999999988877766777777777789999999999986443 233455666


Q ss_pred             HHHH
Q 026538          230 EVIF  233 (237)
Q Consensus       230 ~~l~  233 (237)
                      +.++
T Consensus       149 ~~l~  152 (267)
T cd04169         149 EELG  152 (267)
T ss_pred             HHHC
Confidence            6554

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.69  E-value=4.9e-16  Score=122.23  Aligned_cols=110  Identities=21%  Similarity=0.287  Sum_probs=70.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      .++|+++|.+|||||||+|++.+. ....+.+..+.+.. .....+..+.+|||||...      .    ......|+..
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G~~~------~----~~~~~~~~~~   84 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKND-RLAQHQPTQHPTSE-ELAIGNIKFTTFDLGGHQQ------A----RRLWKDYFPE   84 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcC-CCcccCCccccceE-EEEECCEEEEEEECCCCHH------H----HHHHHHHhCC
Confidence            479999999999999999999987 33333222222221 1222467899999999642      1    2223344443


Q ss_pred             cccccEEEEEEeCCCC--CChhHHHHHHHHH---hcCCcEEEEEecCCCC
Q 026538          172 RVSLKRVCLLIDTKWG--VKPRDHELISLME---RSQTKYQVVLTKTDTV  216 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~---~~~~piilv~NK~Dl~  216 (237)
                         +|++++|+|+++.  +......+.+.+.   ..+.|+++|+||+|+.
T Consensus        85 ---ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~  131 (184)
T smart00178       85 ---VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP  131 (184)
T ss_pred             ---CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence               9999999998754  1112122222222   2478999999999985

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01893 Miro1 Miro1 subfamily

Probab=99.69  E-value=6.1e-16  Score=119.50  Aligned_cols=113  Identities=17%  Similarity=0.159  Sum_probs=71.2

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccC-CCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      +|+++|.+|||||||+|+|.+......... .+.++....+......+.+|||||....          ......++   
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~---   68 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQD----------RANLAAEI---   68 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhh----------hHHHhhhc---
Confidence            799999999999999999998742111111 1122322233223567899999996431          11122222   


Q ss_pred             ccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCChH
Q 026538          173 VSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~~  219 (237)
                      ..+|++++|+|...+.+...  ..++..+..  .+.|+++|+||+|+.+..
T Consensus        69 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~  119 (166)
T cd01893          69 RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS  119 (166)
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccc
Confidence            23899999999876433332  234444443  368999999999997544

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04149 Arf6 Arf6 subfamily

Probab=99.68  E-value=6.6e-16  Score=119.78  Aligned_cols=111  Identities=18%  Similarity=0.207  Sum_probs=70.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      .++|+++|.+|||||||+++|..... ....+..|.+.. .....+..+.+|||||...      .    ..+...++..
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~~~~-~~~~~~~~~~l~Dt~G~~~------~----~~~~~~~~~~   76 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE-TVTYKNVKFNVWDVGGQDK------I----RPLWRHYYTG   76 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCC-ccccCCcccceE-EEEECCEEEEEEECCCCHH------H----HHHHHHHhcc
Confidence            47999999999999999999987632 222222222221 1222467799999999632      1    2223334443


Q ss_pred             cccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          172 RVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                         +|++++|+|++..  +......+.+.+..   .++|+++|+||+|+..
T Consensus        77 ---a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  124 (168)
T cd04149          77 ---TQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD  124 (168)
T ss_pred             ---CCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence               9999999998764  22222223333332   3589999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.68  E-value=8.7e-16  Score=117.40  Aligned_cols=109  Identities=15%  Similarity=0.124  Sum_probs=68.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|||||||+|++++...   .....+++.+.   .....  ...+.+|||||...          +..+...
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~l~~~   68 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHF---VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQ   68 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC---cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc----------hHHHHHH
Confidence            5899999999999999999998732   12222222211   11111  23477899999643          2334445


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                      |+..   ++++++|+|..+..+... ..++..+.    ..+.|+++|+||+|+..
T Consensus        69 ~~~~---~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  120 (162)
T cd04138          69 YMRT---GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA  120 (162)
T ss_pred             HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            5554   899999999775322111 12333332    23689999999999865

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.68  E-value=9.8e-16  Score=118.64  Aligned_cols=111  Identities=18%  Similarity=0.273  Sum_probs=73.1

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      +|+++|.+|||||||+++|.+. ......+..|.+.. .+...+..+.+|||||...      .    ..+...|+..  
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~-~~~~~~~~~~i~D~~G~~~------~----~~~~~~~~~~--   66 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT-KLRLDKYEVCIFDLGGGAN------F----RGIWVNYYAE--   66 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE-EEEECCEEEEEEECCCcHH------H----HHHHHHHHcC--
Confidence            4799999999999999999976 32333344444332 2333467899999999532      2    2233445544  


Q ss_pred             cccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCChH
Q 026538          174 SLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       174 ~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~~  219 (237)
                       +|++++|+|++....... ..++..+..    .++|+++|+||+|+....
T Consensus        67 -a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~  116 (167)
T cd04161          67 -AHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL  116 (167)
T ss_pred             -CCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence             999999999876422221 233333322    368999999999987544

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.68  E-value=7.2e-16  Score=136.31  Aligned_cols=129  Identities=20%  Similarity=0.274  Sum_probs=87.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceee-----------------------c------cCCCCceEEEEEEE---cCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-----------------------T------SDKPGLTQTINFFK---LGT  138 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-----------------------~------~~~~g~t~~~~~~~---~~~  138 (237)
                      ...+|+++|++++|||||+++|+.......                       +      ...+|+|.+..+..   .+.
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~   84 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY   84 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence            456999999999999999999985421110                       0      11578888875443   367


Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCC--CCChhHHHHHHHHHhcCC-cEEEEEecCCC
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERSQT-KYQVVLTKTDT  215 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~--~~~~~~~~~~~~l~~~~~-piilv~NK~Dl  215 (237)
                      .+.+|||||+.+             +...+......+|++++|+|+..  ++.....+.+..+...++ |+++|+||+|+
T Consensus        85 ~i~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl  151 (425)
T PRK12317         85 YFTIVDCPGHRD-------------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDA  151 (425)
T ss_pred             EEEEEECCCccc-------------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccc
Confidence            899999999743             11112222334999999999987  676666676666666665 58999999999


Q ss_pred             CC--hHHHHHHHHHHHHHH
Q 026538          216 VF--PIDVARRAMQIEEVI  232 (237)
Q Consensus       216 ~~--~~~~~~~~~~l~~~l  232 (237)
                      ..  .+......+++.+.+
T Consensus       152 ~~~~~~~~~~~~~~i~~~l  170 (425)
T PRK12317        152 VNYDEKRYEEVKEEVSKLL  170 (425)
T ss_pred             ccccHHHHHHHHHHHHHHH
Confidence            75  222333444444433

>PRK12735 elongation factor Tu; Reviewed

Probab=99.67  E-value=1.8e-15  Score=132.51  Aligned_cols=130  Identities=21%  Similarity=0.306  Sum_probs=89.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc------ccee--------eccCCCCceEEEEEEE---cCCeEEEEeCCCCCCccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ------WGVV--------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA  153 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~------~~~~--------~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~  153 (237)
                      ...+|+++|++++|||||+++|++.      ....        ......|+|.+.....   .+..+.++||||+.    
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~----   86 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA----   86 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence            4468999999999999999999862      1100        0112466777764333   35679999999963    


Q ss_pred             chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEE-EEEecCCCCChHHHHH-HHHHHHHH
Q 026538          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVAR-RAMQIEEV  231 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~Dl~~~~~~~~-~~~~l~~~  231 (237)
                               .++.........+|++++|+|+..+....+.+.+..+...++|.+ +|+||+|+.+.++..+ ..+++++.
T Consensus        87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~  157 (396)
T PRK12735         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL  157 (396)
T ss_pred             ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence                     233444444455899999999998887888888888888889965 5799999985444322 33345444


Q ss_pred             HH
Q 026538          232 IF  233 (237)
Q Consensus       232 l~  233 (237)
                      +.
T Consensus       158 l~  159 (396)
T PRK12735        158 LS  159 (396)
T ss_pred             HH
Confidence            43

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.67  E-value=2e-15  Score=120.70  Aligned_cols=127  Identities=22%  Similarity=0.301  Sum_probs=80.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEE------------------------------cC----
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK------------------------------LG----  137 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~------------------------------~~----  137 (237)
                      .+|+++|+.|+|||||+.+|.+.. .........+.|....+..                              .+    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            378999999999999999998652 0000011111121111000                              02    


Q ss_pred             --CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-CChhHHHHHHHHHhcCC-cEEEEEecC
Q 026538          138 --TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVLTKT  213 (237)
Q Consensus       138 --~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~~-piilv~NK~  213 (237)
                        ..+.+|||||+.             .+...++.....+|++++|+|+..+ ........+..+...+. |+++|+||+
T Consensus        81 ~~~~i~~iDtPG~~-------------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~  147 (203)
T cd01888          81 LVRHVSFVDCPGHE-------------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI  147 (203)
T ss_pred             cccEEEEEECCChH-------------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence              578999999952             2344555555558999999999863 34444555555555554 689999999


Q ss_pred             CCCChHHHHHHHHHHHHHH
Q 026538          214 DTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       214 Dl~~~~~~~~~~~~l~~~l  232 (237)
                      |+....+.....+.+++.+
T Consensus       148 Dl~~~~~~~~~~~~i~~~~  166 (203)
T cd01888         148 DLVKEEQALENYEQIKKFV  166 (203)
T ss_pred             hccCHHHHHHHHHHHHHHH
Confidence            9987665555556665544

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12736 elongation factor Tu; Reviewed

Probab=99.67  E-value=1.8e-15  Score=132.38  Aligned_cols=130  Identities=21%  Similarity=0.293  Sum_probs=92.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccc-----ee---------eccCCCCceEEEEEEE---cCCeEEEEeCCCCCCccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VV---------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA  153 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~-----~~---------~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~  153 (237)
                      ...+|+++|+.++|||||+++|++...     ..         .....+|+|.+.....   .+..+.+|||||+.    
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~----   86 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA----   86 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH----
Confidence            446999999999999999999987310     00         0111456777764333   25678999999963    


Q ss_pred             chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHH-HHHHHHHH
Q 026538          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEEV  231 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~-~~~~l~~~  231 (237)
                               .++..++.....+|++++|+|+..++...+.+.+..+...++| +++|+||+|+.+.++..+ ..+++.+.
T Consensus        87 ---------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~  157 (394)
T PRK12736         87 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVREL  157 (394)
T ss_pred             ---------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence                     2334444444558999999999988888888888888888998 678999999986555443 33355554


Q ss_pred             HH
Q 026538          232 IF  233 (237)
Q Consensus       232 l~  233 (237)
                      +.
T Consensus       158 l~  159 (394)
T PRK12736        158 LS  159 (394)
T ss_pred             HH
Confidence            43

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.67  E-value=3.9e-16  Score=120.34  Aligned_cols=112  Identities=17%  Similarity=0.154  Sum_probs=68.1

Q ss_pred             EEEEecCCCCchhhHHHHHhcccce--eeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~--~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +|+++|++|||||||+|+|++....  ........+|....   +...+..+.+|||||...          +..+...+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~   70 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES----------LRSLWDKY   70 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHH
Confidence            5899999999999999999875210  01111122232221   222367899999999643          12222333


Q ss_pred             HhccccccEEEEEEeCCCCCChh-HHHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLME----RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~----~~~~piilv~NK~Dl~~~  218 (237)
                      +..   +|++++|+|+...-... ...++..+.    ..+.|+++|+||+|+...
T Consensus        71 ~~~---~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~  122 (167)
T cd04160          71 YAE---CHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA  122 (167)
T ss_pred             hCC---CCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence            333   89999999987532111 122222222    247899999999998654

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.67  E-value=2.3e-15  Score=133.21  Aligned_cols=129  Identities=20%  Similarity=0.279  Sum_probs=90.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc-----cee---------eccCCCCceEEEEEEEc---CCeEEEEeCCCCCCccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA  153 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~---------~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~  153 (237)
                      ...+|+++|+.++|||||+++|.+..     ...         .....+|+|.+......   +..+.++||||+.+   
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~---  136 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD---  136 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence            45699999999999999999997320     000         11123678887644332   56799999999853   


Q ss_pred             chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHHHH-HHHHHH
Q 026538          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRA-MQIEEV  231 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~~~-~~l~~~  231 (237)
                                ++.........+|++++|+|+..++..++.+.+..+...++| +++|+||+|+.+.++..+.. +++.+.
T Consensus       137 ----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~  206 (447)
T PLN03127        137 ----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELREL  206 (447)
T ss_pred             ----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence                      222222222349999999999988888889999999988999 57899999998655443333 344444


Q ss_pred             H
Q 026538          232 I  232 (237)
Q Consensus       232 l  232 (237)
                      +
T Consensus       207 l  207 (447)
T PLN03127        207 L  207 (447)
T ss_pred             H
Confidence            3

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.67  E-value=1.2e-15  Score=142.00  Aligned_cols=113  Identities=25%  Similarity=0.375  Sum_probs=86.0

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .+.|+|+++|+.++|||||+++|.+..  ......+|.|.++..+.   .+..++||||||+..          |..+..
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~--v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~----------F~~m~~  355 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTN--VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA----------FTAMRA  355 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCC--ccccccCceeeeccEEEEEECCEEEEEEECCCCcc----------chhHHH
Confidence            467899999999999999999998763  22334566776654332   367899999999754          112222


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      .+.   ..+|++++|+|+.++......+.+..+...++|+++|+||+|+..
T Consensus       356 rga---~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~  403 (787)
T PRK05306        356 RGA---QVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG  403 (787)
T ss_pred             hhh---hhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc
Confidence            222   238999999999988888888888888888999999999999964

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.67  E-value=6.1e-16  Score=138.79  Aligned_cols=130  Identities=21%  Similarity=0.266  Sum_probs=96.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCC--cccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGF--AYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~--~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.||+|||||+|+|+|.+  ..+++.||+|.+....   ..+..+.++|+||..+  +.+.+      +...+.
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D------E~Var~   75 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED------EKVARD   75 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch------HHHHHH
Confidence            469999999999999999999996  7899999999886543   3477799999999644  22222      234455


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      |+.. ..+|+++.|+|+++-  +....+.-++.+.+.|+++++|++|........-..+.+++.++
T Consensus        76 ~ll~-~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG  138 (653)
T COG0370          76 FLLE-GKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLG  138 (653)
T ss_pred             HHhc-CCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhC
Confidence            5543 348999999999843  44455566677889999999999998655444444555555554

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.67  E-value=4.2e-15  Score=120.35  Aligned_cols=127  Identities=20%  Similarity=0.168  Sum_probs=88.6

Q ss_pred             EEEEecCCCCchhhHHHHHhcccc-----eeec--c-----CCCCceEE---------------------------EEEE
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWG-----VVRT--S-----DKPGLTQT---------------------------INFF  134 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~-----~~~~--~-----~~~g~t~~---------------------------~~~~  134 (237)
                      +|+++|..++|||||+++|.....     ....  .     ...|.|..                           -.+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            578999999999999999985310     0000  0     00111110                           0111


Q ss_pred             EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc--ccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEec
Q 026538          135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK  212 (237)
Q Consensus       135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK  212 (237)
                      ..+..+.++||||+..             +.+......  ..+|++++|+|+..++...+..++.++...++|+++|+||
T Consensus        81 ~~~~~i~liDtpG~~~-------------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK  147 (224)
T cd04165          81 KSSKLVTFIDLAGHER-------------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTK  147 (224)
T ss_pred             eCCcEEEEEECCCcHH-------------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEC
Confidence            2356799999999742             112222221  2389999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHH
Q 026538          213 TDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       213 ~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      +|+.+.....+..+.+.+.++
T Consensus       148 ~D~~~~~~~~~~~~~l~~~L~  168 (224)
T cd04165         148 IDLAPANILQETLKDLKRILK  168 (224)
T ss_pred             ccccCHHHHHHHHHHHHHHhc
Confidence            999887777777777777654

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01861 Rab6 Rab6 subfamily

Probab=99.67  E-value=1.4e-15  Score=116.43  Aligned_cols=109  Identities=17%  Similarity=0.182  Sum_probs=70.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--E-EcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F-KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~-~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +|+++|++|||||||+|+|++.. . .....++++.+...  . ..+  ..+.+|||||...          +..+...+
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~~~~   69 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDT-F-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER----------FRSLIPSY   69 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC-C-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHHH
Confidence            79999999999999999999884 2 22344444444321  1 112  4589999999532          22334444


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHH-hc--CCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RS--QTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-~~--~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|.+.+-+... ..++..+. ..  +.|+++|+||+|+..
T Consensus        70 ~~~---~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~  119 (161)
T cd01861          70 IRD---SSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD  119 (161)
T ss_pred             hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence            443   899999999875422222 23444333 23  489999999999953

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.67  E-value=1.3e-15  Score=122.57  Aligned_cols=129  Identities=18%  Similarity=0.193  Sum_probs=83.8

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeecc-CCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~-~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      +|+++|.+|+||||++|.|+|... .... ...+.|..+..   ...+..+.+|||||+.++....  .+....+.+...
T Consensus         2 ~IlllG~tGsGKSs~~N~ilg~~~-f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~--~~~~~~i~~~l~   78 (212)
T PF04548_consen    2 RILLLGKTGSGKSSLGNSILGKEV-FKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD--EEIIREIKRCLS   78 (212)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS--SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH--HHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcccc-eeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccH--HHHHHHHHHHHH
Confidence            799999999999999999999852 2222 22334444332   3358889999999997754322  222333444334


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhc-----CCcEEEEEecCCCCChHHHHHHHH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAM  226 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~Dl~~~~~~~~~~~  226 (237)
                      ...++.+++++|++.. .++..+...++.+...     ...++||+|.+|...+..+.+.++
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~  139 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLK  139 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHH
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHh
Confidence            4456689999999988 7888888877777642     456999999999887665544444

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01864 Rab19 Rab19 subfamily

Probab=99.67  E-value=1.7e-15  Score=116.67  Aligned_cols=114  Identities=20%  Similarity=0.229  Sum_probs=71.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-cC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|++|+|||||++++.+...........+......... .+  ..+.+|||||...          +..+...+
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~   72 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER----------FRTITQSY   72 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence            36999999999999999999987631111112222222222222 22  4689999999421          22333344


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      +..   +|++++|+|++...+... ..++..+..   .+.|+++|+||+|+...
T Consensus        73 ~~~---~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  123 (165)
T cd01864          73 YRS---ANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ  123 (165)
T ss_pred             hcc---CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence            433   899999999876432222 345554443   36899999999998744

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.67  E-value=2.4e-15  Score=136.83  Aligned_cols=113  Identities=22%  Similarity=0.322  Sum_probs=85.0

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCC-eEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT-KLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      .+.|+|+++|++|+|||||+++|.+..  ......+|+|.++..+.   .+. .+.+|||||+..          +..+.
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~--v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~----------F~~~r  152 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTK--VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA----------FTSMR  152 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCC--cccccCCceeecceEEEEEECCCcEEEEEECCCCcc----------hhhHH
Confidence            456899999999999999999999873  22344567777764332   233 899999999753          11222


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      ..+   ...+|++++|+|+.++...+..+.+..+...++|+++++||+|+..
T Consensus       153 ~rg---a~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~  201 (587)
T TIGR00487       153 ARG---AKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE  201 (587)
T ss_pred             Hhh---hccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc
Confidence            222   2338999999999988888888888887778999999999999863

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04124 RabL2 RabL2 subfamily

Probab=99.66  E-value=9e-16  Score=118.03  Aligned_cols=111  Identities=17%  Similarity=0.146  Sum_probs=70.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|.+|||||||++++++........+..+.+...   ........+.+|||||...          +..+...|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~   70 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER----------FQTMHASYY   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh----------hhhhhHHHh
Confidence            379999999999999999998773211111111111111   1111234688999999532          333444555


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHHhc--CCcEEEEEecCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTV  216 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~piilv~NK~Dl~  216 (237)
                      ..   +|++++|+|.+++.+... ..++..+...  +.|+++|+||+|+.
T Consensus        71 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~  117 (161)
T cd04124          71 HK---AHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD  117 (161)
T ss_pred             CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence            44   899999999876533322 3455555443  68999999999985

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.66  E-value=2.9e-15  Score=137.10  Aligned_cols=127  Identities=24%  Similarity=0.355  Sum_probs=93.8

Q ss_pred             EEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .|+++|+.++|||||+++|++.+ +........|.|.+..+...    +..+.+|||||+.             .+...+
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------------~fi~~m   68 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------------KFLSNM   68 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------------HHHHHH
Confidence            68999999999999999999752 11122344688887754432    5668999999963             223333


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      ......+|++++|+|+..++.+++.+.+..+...++| +++|+||+|+.+.+......+++.+.+.
T Consensus        69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~  134 (614)
T PRK10512         69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLR  134 (614)
T ss_pred             HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence            3334449999999999999889888888888887887 5799999999876666666666665543

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.66  E-value=9.4e-16  Score=117.21  Aligned_cols=111  Identities=19%  Similarity=0.207  Sum_probs=71.0

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      +|+++|.+|||||||++++++.. ........+.+... +...+..+.+|||||...      .    ......++..  
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~------~----~~~~~~~~~~--   66 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET-VEYKNVSFTVWDVGGQDK------I----RPLWKHYYEN--   66 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE-EEECCEEEEEEECCCChh------h----HHHHHHHhcc--
Confidence            58999999999999999999884 23333333333322 222367899999999643      1    2222333333  


Q ss_pred             cccEEEEEEeCCCCC--ChhHHHHHHHHH---hcCCcEEEEEecCCCCChH
Q 026538          174 SLKRVCLLIDTKWGV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       174 ~~d~v~~vvd~~~~~--~~~~~~~~~~l~---~~~~piilv~NK~Dl~~~~  219 (237)
                       +|++++|+|+..+-  ......+...+.   ..+.|+++|+||+|+....
T Consensus        67 -~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~  116 (158)
T cd00878          67 -TNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL  116 (158)
T ss_pred             -CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence             89999999987541  111112222222   2468999999999997644

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd00154 Rab Rab family

Probab=99.66  E-value=2.6e-15  Score=113.90  Aligned_cols=110  Identities=17%  Similarity=0.145  Sum_probs=70.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeec-cCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~-~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ++|+++|.+|+|||||+|++++.. .... .+..+.+.......   ....+.+||+||...          +......+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~   69 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGK-FDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER----------FRSITPSY   69 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCc-CCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH----------HHHHHHHH
Confidence            479999999999999999999883 2222 22222222222222   245689999999632          22333444


Q ss_pred             HhccccccEEEEEEeCCCCCChh-HHHHHHHHHhc---CCcEEEEEecCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTV  216 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~---~~piilv~NK~Dl~  216 (237)
                      +..   +|++++|+|+.+.-+.. ...++..+...   +.|+++|+||+|+.
T Consensus        70 ~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  118 (159)
T cd00154          70 YRG---AHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE  118 (159)
T ss_pred             hcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence            433   89999999987532111 12344444443   48999999999996

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.66  E-value=9.1e-16  Score=124.12  Aligned_cols=120  Identities=25%  Similarity=0.298  Sum_probs=82.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce----EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t----~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ...+|+++|.+|+|||||||+|+.. ....++..+.++    +....+ .+..++||||||+++....+.   .+...+.
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~-~~~~v~~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~---~~r~~~~  112 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQG-EVKEVSKVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDA---EHRQLYR  112 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhc-cCceeeecccCCCchhhHHhhc-cccceEEecCCCcccchhhhH---HHHHHHH
Confidence            3468889999999999999999976 334455444333    222222 357799999999998543331   1223333


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~Dl~~~  218 (237)
                      .++   ...|++++++|+.++.-..+.++++.+..  .+.|+++|+|.+|...+
T Consensus       113 d~l---~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p  163 (296)
T COG3596         113 DYL---PKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEP  163 (296)
T ss_pred             HHh---hhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcc
Confidence            333   33899999999887766667777666543  35899999999998643

>cd04151 Arl1 Arl1 subfamily

Probab=99.66  E-value=1.5e-15  Score=116.24  Aligned_cols=110  Identities=21%  Similarity=0.199  Sum_probs=68.5

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      +|+++|++|+|||||+++|..... ....+..+.+.. .+...+..+.+|||||...      .    ..+...++..  
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~-~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~------~----~~~~~~~~~~--   66 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEV-VTTIPTIGFNVE-TVTYKNLKFQVWDLGGQTS------I----RPYWRCYYSN--   66 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCC-cCcCCccCcCeE-EEEECCEEEEEEECCCCHH------H----HHHHHHHhcC--
Confidence            589999999999999999977632 221111111111 1222467799999999642      1    2223333433  


Q ss_pred             cccEEEEEEeCCCCCC--hhHHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          174 SLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       174 ~~d~v~~vvd~~~~~~--~~~~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                       +|++++|+|++...+  .....+...+..   .+.|+++|+||+|+...
T Consensus        67 -~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~  115 (158)
T cd04151          67 -TDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA  115 (158)
T ss_pred             -CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence             999999999875321  112233333332   36899999999998643

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.66  E-value=1.3e-15  Score=140.80  Aligned_cols=113  Identities=21%  Similarity=0.375  Sum_probs=84.3

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-------cCCeEEEEeCCCCCCcccchHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWE  162 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-------~~~~~~liDTpG~~~~~~~~~~~~~~~  162 (237)
                      .+.|+|+++|++|+|||||+++|.+..  ......+|.|.++..+.       .+..+++|||||+..          |.
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~--~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~----------F~  309 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQ--IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA----------FS  309 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhcc--CccccCCccccccceEEEEEEecCCceEEEEEECCcHHH----------HH
Confidence            466899999999999999999999873  22233455665532221       247899999999632          22


Q ss_pred             HHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      .+...++..   +|++++|+|+..+......+.+..+...++|+++|+||+|+..
T Consensus       310 ~mr~rg~~~---aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~  361 (742)
T CHL00189        310 SMRSRGANV---TDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN  361 (742)
T ss_pred             HHHHHHHHH---CCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc
Confidence            333333332   8999999999988888888888888888999999999999864

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.66  E-value=2.2e-15  Score=117.35  Aligned_cols=111  Identities=20%  Similarity=0.267  Sum_probs=70.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      ..+|+++|++|+|||||+++|++... ....+..+.+.. .+...+..+.+|||||...      ....|    ..++. 
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~-~~~~~t~~~~~~-~~~~~~~~~~l~D~~G~~~------~~~~~----~~~~~-   81 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEV-VHTSPTIGSNVE-EIVYKNIRFLMWDIGGQES------LRSSW----NTYYT-   81 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceE-EEEECCeEEEEEECCCCHH------HHHHH----HHHhh-
Confidence            36899999999999999999987632 222333332221 2223367899999999632      22222    23333 


Q ss_pred             cccccEEEEEEeCCCCCCh--hHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          172 RVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                        .+|++++|+|++.....  ....+.+.+..   .+.|+++|+||+|+..
T Consensus        82 --~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~  130 (174)
T cd04153          82 --NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG  130 (174)
T ss_pred             --cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence              29999999998754221  11223333322   2589999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.66  E-value=5.4e-15  Score=123.37  Aligned_cols=123  Identities=21%  Similarity=0.237  Sum_probs=84.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|+||||++|+|++. ....++...+++...   .....+..+.+|||||+.+..   ...+.....+..
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~---~~~e~~~~~ik~  112 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG---YINDQAVNIIKR  112 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH---HHHHHHHHHHHH
Confidence            4579999999999999999999998 445555655544332   222357889999999998642   222223344555


Q ss_pred             HHhccccccEEEEEEeCC-CCCChhHHHHHHHHHhc-----CCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTK-WGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~-----~~piilv~NK~Dl~~~  218 (237)
                      |+.. ...|+++||.... ..+...+..+++.+...     ..++++|+|++|..++
T Consensus       113 ~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       113 FLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             Hhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence            5443 3489999995432 24666667777666542     4679999999998754

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.66  E-value=2.1e-15  Score=115.83  Aligned_cols=110  Identities=17%  Similarity=0.182  Sum_probs=68.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      .+|+++|.+|||||||++++..... ....+..|.... .+......+.+|||||...          +..+...|+.. 
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~-~~~~pt~g~~~~-~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~-   67 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK----------IRPLWRHYFQN-   67 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC-cccCCCCCcceE-EEEECCEEEEEEECCCCHh----------HHHHHHHHhcC-
Confidence            3799999999999999999976532 211111122111 1222467799999999632          22233344444 


Q ss_pred             ccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          173 VSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                        +|++++|+|++..  +......+.+.+..   ...|+++|+||+|+..
T Consensus        68 --ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  115 (159)
T cd04150          68 --TQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN  115 (159)
T ss_pred             --CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence              9999999998753  22222223333322   2589999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PLN03126 Elongation factor Tu; Provisional

Probab=99.66  E-value=3.8e-15  Score=132.57  Aligned_cols=131  Identities=21%  Similarity=0.245  Sum_probs=92.3

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccce--------------eeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAY  152 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~--------------~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~  152 (237)
                      ....+|+++|++++|||||+++|+.....              .......|.|.+...   ...+..+.+|||||+.+  
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~--  156 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD--  156 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH--
Confidence            34578999999999999999999963110              011223556666532   23467899999999632  


Q ss_pred             cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHH-HHHHHHH
Q 026538          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEE  230 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~-~~~~l~~  230 (237)
                                 ++.........+|++++|+|+..+...+..+.+..+...++| +++++||+|+.+.++..+ ..+++.+
T Consensus       157 -----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~  225 (478)
T PLN03126        157 -----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRE  225 (478)
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence                       233333333448999999999999888888888888888998 778999999987555433 3335555


Q ss_pred             HHH
Q 026538          231 VIF  233 (237)
Q Consensus       231 ~l~  233 (237)
                      .+.
T Consensus       226 ~l~  228 (478)
T PLN03126        226 LLS  228 (478)
T ss_pred             HHH
Confidence            544

>cd01866 Rab2 Rab2 subfamily

Probab=99.66  E-value=2.9e-15  Score=115.97  Aligned_cols=113  Identities=17%  Similarity=0.145  Sum_probs=71.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..+|+++|.+|||||||++++++...........|.+........   ...+.+|||||...          +..+...+
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~   73 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES----------FRSITRSY   73 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHHH
Confidence            469999999999999999999987321112222333322222221   34689999999421          22333344


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|++...+... ..++..+..   .+.|+++|+||+|+..
T Consensus        74 ~~~---~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~  123 (168)
T cd01866          74 YRG---AAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES  123 (168)
T ss_pred             hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence            433   899999999875322222 234444443   3689999999999874

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.66  E-value=2.2e-15  Score=121.83  Aligned_cols=127  Identities=17%  Similarity=0.222  Sum_probs=81.0

Q ss_pred             EEEEecCCCCchhhHHHHHhcccce-----------------------------eeccCCCCceEEEEE---EEcCCeEE
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINF---FKLGTKLC  141 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~-----------------------------~~~~~~~g~t~~~~~---~~~~~~~~  141 (237)
                      +|+++|+.++|||||+.+|+...+.                             ......+|+|++...   ...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            5899999999999999999743110                             001113456766533   33478899


Q ss_pred             EEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-------CChhHHHHHHHHHhcC-CcEEEEEecC
Q 026538          142 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQ-TKYQVVLTKT  213 (237)
Q Consensus       142 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~-~piilv~NK~  213 (237)
                      +|||||+.+             +...++.....+|++++|+|+..+       ........+......+ .|+++|+||+
T Consensus        81 liDtpG~~~-------------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~  147 (219)
T cd01883          81 ILDAPGHRD-------------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM  147 (219)
T ss_pred             EEECCChHH-------------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence            999999632             122233333449999999998863       3334444444455555 5799999999


Q ss_pred             CCCC----hHHHHHHHHHHHHHHH
Q 026538          214 DTVF----PIDVARRAMQIEEVIF  233 (237)
Q Consensus       214 Dl~~----~~~~~~~~~~l~~~l~  233 (237)
                      |+..    ........+.++..+.
T Consensus       148 Dl~~~~~~~~~~~~i~~~l~~~l~  171 (219)
T cd01883         148 DDVTVNWSEERYDEIKKELSPFLK  171 (219)
T ss_pred             ccccccccHHHHHHHHHHHHHHHH
Confidence            9973    3334455555554443

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.65  E-value=1.4e-15  Score=116.81  Aligned_cols=110  Identities=15%  Similarity=0.124  Sum_probs=70.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|+|||||++++++..   ......+++.+.   .....  ...+.+|||||..+          +..+...
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~   69 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSY---FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE----------FSAMREQ   69 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc----------hhHHHHH
Confidence            589999999999999999999873   233333333221   11111  24588999999643          2233444


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~  218 (237)
                      ++..   +|++++|+|++...+... ..++..+.    ..+.|+++|+||+|+...
T Consensus        70 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~  122 (164)
T cd04145          70 YMRT---GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ  122 (164)
T ss_pred             HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence            4443   899999999875322211 22333332    236899999999998653

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.65  E-value=3.8e-15  Score=114.52  Aligned_cols=112  Identities=18%  Similarity=0.162  Sum_probs=69.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|.+|||||||+|+|++........+..+.....   ........+.+|||||...          +..+...++
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~   70 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE----------YLEVRNEFY   70 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHH----------HHHHHHHHh
Confidence            379999999999999999999884222112221111111   1111245688999999632          223334444


Q ss_pred             hccccccEEEEEEeCCCCCChh-HHHHHHHHHh--------cCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPR-DHELISLMER--------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~--------~~~piilv~NK~Dl~~  217 (237)
                      ..   +|++++|+|.++..+.. ...++..+..        .+.|+++|+||+|+.+
T Consensus        71 ~~---~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  124 (168)
T cd04119          71 KD---TQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK  124 (168)
T ss_pred             cc---CCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence            33   89999999987542211 1234433322        3578999999999873

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.65  E-value=2.6e-15  Score=124.98  Aligned_cols=126  Identities=20%  Similarity=0.310  Sum_probs=84.0

Q ss_pred             EEEEecCCCCchhhHHHHHhccccee----eccC------------CCCceEE---EEEEEcCCeEEEEeCCCCCCcccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVV----RTSD------------KPGLTQT---INFFKLGTKLCLVDLPGYGFAYAK  154 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~----~~~~------------~~g~t~~---~~~~~~~~~~~liDTpG~~~~~~~  154 (237)
                      +|+++|.+|+|||||+|+|+...+..    .+..            ..+.+..   ..+...+..+.+|||||+.+    
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~----   76 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD----   76 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence            58999999999999999998642110    0100            0111111   12333467899999999642    


Q ss_pred             hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                            +......++.   .+|++++|+|+..+.......+++.+...++|+++|+||+|+... +....++.+++.++
T Consensus        77 ------f~~~~~~~l~---~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~-~~~~~~~~l~~~~~  145 (268)
T cd04170          77 ------FVGETRAALR---AADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA-DFDKTLAALQEAFG  145 (268)
T ss_pred             ------HHHHHHHHHH---HCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC-CHHHHHHHHHHHhC
Confidence                  1111222222   299999999998887777777777788889999999999998754 34455666666554

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04167 Snu114p Snu114p subfamily

Probab=99.65  E-value=3.7e-15  Score=119.94  Aligned_cols=110  Identities=22%  Similarity=0.254  Sum_probs=72.6

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceee-----------cc------CCCCceEEE---EEEE-----cCCeEEEEeCCCC
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVR-----------TS------DKPGLTQTI---NFFK-----LGTKLCLVDLPGY  148 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~-----------~~------~~~g~t~~~---~~~~-----~~~~~~liDTpG~  148 (237)
                      +|+++|+.|+|||||+++|+.......           ..      ...|.|...   .+..     ....+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            789999999999999999987532110           00      011222211   1111     1356899999997


Q ss_pred             CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      .+-          ......++.   .+|++++|+|+..+.......+++.+...+.|+++|+||+|++
T Consensus        82 ~~f----------~~~~~~~~~---~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNF----------MDEVAAALR---LSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL  136 (213)
T ss_pred             cch----------HHHHHHHHH---hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence            541          111222222   2899999999988776666666666666679999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.65  E-value=3.3e-15  Score=115.32  Aligned_cols=111  Identities=15%  Similarity=0.233  Sum_probs=69.9

Q ss_pred             EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcccc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS  174 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (237)
                      |+++|.+|||||||++++.+........+..|.. ...+...+..+.+|||||...      ..    .+...|+..   
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~-~~~i~~~~~~l~i~Dt~G~~~------~~----~~~~~~~~~---   67 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN-SVAIPTQDAIMELLEIGGSQN------LR----KYWKRYLSG---   67 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc-eEEEeeCCeEEEEEECCCCcc------hh----HHHHHHHhh---
Confidence            7899999999999999999873212122222221 122333467899999999643      12    222233333   


Q ss_pred             ccEEEEEEeCCCCCChh-HHHHHHHHH-h-cCCcEEEEEecCCCCChH
Q 026538          175 LKRVCLLIDTKWGVKPR-DHELISLME-R-SQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       175 ~d~v~~vvd~~~~~~~~-~~~~~~~l~-~-~~~piilv~NK~Dl~~~~  219 (237)
                      +|++++|+|+++..+.. ...++..+. . .++|+++|+||+|+....
T Consensus        68 ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~  115 (164)
T cd04162          68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR  115 (164)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC
Confidence            99999999987643211 122333332 2 478999999999986543

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04155 Arl3 Arl3 subfamily

Probab=99.65  E-value=2.1e-15  Score=116.97  Aligned_cols=117  Identities=20%  Similarity=0.272  Sum_probs=73.8

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ...++|+++|++|||||||+++|.+.. .....+..|.+... ....+..+.+|||||...      .    ......++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~-~~~~~~t~g~~~~~-i~~~~~~~~~~D~~G~~~------~----~~~~~~~~   79 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASED-ISHITPTQGFNIKT-VQSDGFKLNVWDIGGQRA------I----RPYWRNYF   79 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCC-CcccCCCCCcceEE-EEECCEEEEEEECCCCHH------H----HHHHHHHh
Confidence            346799999999999999999999873 23333333433222 222367899999999532      1    12223333


Q ss_pred             hccccccEEEEEEeCCCCCC--hhHHHHHHHH---HhcCCcEEEEEecCCCCChHHH
Q 026538          170 STRVSLKRVCLLIDTKWGVK--PRDHELISLM---ERSQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~--~~~~~~~~~l---~~~~~piilv~NK~Dl~~~~~~  221 (237)
                      .   .+|++++|+|+.....  .....+...+   ...++|+++++||+|+....+.
T Consensus        80 ~---~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  133 (173)
T cd04155          80 E---NTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA  133 (173)
T ss_pred             c---CCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH
Confidence            3   3899999999875311  1111222222   2246899999999998764433

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.65  E-value=3.4e-15  Score=117.21  Aligned_cols=113  Identities=17%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      ..+|+++|.+|||||||++++..... ....+..|.+.. .+...+..+.+|||||...      .    ..+...|+..
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~-~~~~pt~g~~~~-~~~~~~~~~~i~D~~Gq~~------~----~~~~~~~~~~   84 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK------I----RPLWRHYFQN   84 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCC-ccccCCcceeEE-EEEECCEEEEEEECCCCHH------H----HHHHHHHhcc
Confidence            46999999999999999999986532 222222222211 1223367799999999521      2    2333444443


Q ss_pred             cccccEEEEEEeCCCCCCh--hHHHHHHHHHh---cCCcEEEEEecCCCCChH
Q 026538          172 RVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~Dl~~~~  219 (237)
                         +|++++|+|+++..+-  ...++...+..   .+.|+++|+||+|+....
T Consensus        85 ---a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~  134 (181)
T PLN00223         85 ---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM  134 (181)
T ss_pred             ---CCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence               8999999998753211  11122222221   368999999999986543

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.65  E-value=1.7e-15  Score=113.86  Aligned_cols=101  Identities=19%  Similarity=0.200  Sum_probs=65.6

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      +|+++|++|||||||+|+|.+.. ..   .  ..|..+.+.     -.+|||||...     .....+..+.. +   ..
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~-~~---~--~~t~~~~~~-----~~~iDt~G~~~-----~~~~~~~~~~~-~---~~   61 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEE-IL---Y--KKTQAVEYN-----DGAIDTPGEYV-----ENRRLYSALIV-T---AA   61 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCc-cc---c--ccceeEEEc-----CeeecCchhhh-----hhHHHHHHHHH-H---hh
Confidence            79999999999999999999873 11   1  123222222     17899999621     01112222222 2   33


Q ss_pred             cccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      .+|++++|+|+..+.+.....+...+   ..|+++|+||+|+.+
T Consensus        62 ~ad~vilv~d~~~~~s~~~~~~~~~~---~~p~ilv~NK~Dl~~  102 (142)
T TIGR02528        62 DADVIALVQSATDPESRFPPGFASIF---VKPVIGLVTKIDLAE  102 (142)
T ss_pred             cCCEEEEEecCCCCCcCCChhHHHhc---cCCeEEEEEeeccCC
Confidence            49999999998776554444443332   359999999999865

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.65  E-value=3.7e-15  Score=116.29  Aligned_cols=110  Identities=16%  Similarity=0.204  Sum_probs=69.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .++|+++|.+|||||||++++..... .  ...|.+..+.. ....+..+.+|||||...          +..+...|+.
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~--~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~   79 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGES-V--TTIPTIGFNVETVTYKNISFTVWDVGGQDK----------IRPLWRHYYT   79 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCC-C--CcCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHHhC
Confidence            47999999999999999999975522 1  22222222221 222366799999999632          2233344444


Q ss_pred             ccccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      .   +|++++|+|++..  +......+...+..   .+.|+++|+||+|+..
T Consensus        80 ~---ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~  128 (175)
T smart00177       80 N---TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD  128 (175)
T ss_pred             C---CCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence            4   9999999998753  22222222222222   2589999999999864

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01868 Rab11_like Rab11-like

Probab=99.65  E-value=1.9e-15  Score=116.31  Aligned_cols=114  Identities=20%  Similarity=0.188  Sum_probs=71.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..+|+++|++|||||||++++++........+..+.+.... +...+  ..+.+|||||...          +..+...+
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~   72 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER----------YRAITSAY   72 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH----------HHHHHHHH
Confidence            46899999999999999999998742112222222211111 11112  4688999999532          23344444


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      +..   ++++++|+|.++..+... ..++..+..   .+.|+++|+||+|+...
T Consensus        73 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~  123 (165)
T cd01868          73 YRG---AVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL  123 (165)
T ss_pred             HCC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence            443   899999999875322222 234444433   25899999999998643

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PRK00049 elongation factor Tu; Reviewed

Probab=99.64  E-value=5.2e-15  Score=129.50  Aligned_cols=130  Identities=21%  Similarity=0.307  Sum_probs=92.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccc-----ee---------eccCCCCceEEEEEEEc---CCeEEEEeCCCCCCccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA  153 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~-----~~---------~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~  153 (237)
                      ...+|+++|+.++|||||+++|++...     ..         .....+|+|.+......   +..+.++||||+.    
T Consensus        11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~----   86 (396)
T PRK00049         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA----   86 (396)
T ss_pred             CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence            346899999999999999999997310     00         01124677777654333   5679999999963    


Q ss_pred             chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEE-EEEecCCCCChHHHH-HHHHHHHHH
Q 026538          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVA-RRAMQIEEV  231 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~Dl~~~~~~~-~~~~~l~~~  231 (237)
                               .++.........+|++++|+|+..++...+.+++..+...++|.+ +++||+|+.+.++.. ...+++++.
T Consensus        87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~  157 (396)
T PRK00049         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL  157 (396)
T ss_pred             ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHH
Confidence                     233333444556999999999998888888888888888899976 689999998644433 233455555


Q ss_pred             HH
Q 026538          232 IF  233 (237)
Q Consensus       232 l~  233 (237)
                      +.
T Consensus       158 l~  159 (396)
T PRK00049        158 LS  159 (396)
T ss_pred             HH
Confidence            43

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.64  E-value=3.7e-15  Score=117.07  Aligned_cols=111  Identities=18%  Similarity=0.180  Sum_probs=70.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      ..+|+++|++|||||||++++..... ....+..+.... .....+..+.+|||||...          +..+...|+..
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~-~~~~~T~~~~~~-~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~   84 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYKNLKFTMWDVGGQDK----------LRPLWRHYYQN   84 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCc-cccCCccccceE-EEEECCEEEEEEECCCCHh----------HHHHHHHHhcC
Confidence            36999999999999999999976522 222222222211 1222467799999999632          22233344444


Q ss_pred             cccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          172 RVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                         +|++++|+|+++.  +......+.+.+..   ...|+++|+||+|+..
T Consensus        85 ---ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~  132 (182)
T PTZ00133         85 ---TNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN  132 (182)
T ss_pred             ---CCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence               9999999998753  22222223333332   3589999999999864

>PRK00007 elongation factor G; Reviewed

Probab=99.64  E-value=2.9e-15  Score=139.56  Aligned_cols=131  Identities=18%  Similarity=0.183  Sum_probs=95.9

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccce----eecc------------CCCCceEEE---EEEEcCCeEEEEeCCCCCC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTS------------DKPGLTQTI---NFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~----~~~~------------~~~g~t~~~---~~~~~~~~~~liDTpG~~~  150 (237)
                      ...++|+++|++|+|||||+|+|+...+.    ..+.            ..+|+|.+.   .+.+.+..++++||||+.+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            35679999999999999999999742110    1111            245566654   3444588899999999742


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                                   +..........+|++++|+|+..+++.++..++..+...++|+++++||+|+.... ....++.+++
T Consensus        88 -------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~-~~~~~~~i~~  153 (693)
T PRK00007         88 -------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD-FYRVVEQIKD  153 (693)
T ss_pred             -------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence                         11112222333899999999999999999999999999999999999999998644 5566777777


Q ss_pred             HHHh
Q 026538          231 VIFY  234 (237)
Q Consensus       231 ~l~~  234 (237)
                      .++.
T Consensus       154 ~l~~  157 (693)
T PRK00007        154 RLGA  157 (693)
T ss_pred             HhCC
Confidence            6654

>cd04158 ARD1 ARD1 subfamily

Probab=99.64  E-value=2.4e-15  Score=116.56  Aligned_cols=108  Identities=19%  Similarity=0.245  Sum_probs=67.6

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      +|+++|.+|||||||+++|.+.. .  ....+....+. .+...+..+.+|||||...      ..    .....++.. 
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~-~--~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~------~~----~~~~~~~~~-   66 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDE-F--MQPIPTIGFNVETVEYKNLKFTIWDVGGKHK------LR----PLWKHYYLN-   66 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCC-C--CCcCCcCceeEEEEEECCEEEEEEECCCChh------cc----hHHHHHhcc-
Confidence            58999999999999999999873 1  22222111122 1223467899999999643      11    222233333 


Q ss_pred             ccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          173 VSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                        +|++++|+|++..  +......+...+..   .+.|+++|+||+|+..
T Consensus        67 --ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  114 (169)
T cd04158          67 --TQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG  114 (169)
T ss_pred             --CCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence              8999999998753  22222222223322   2479999999999864

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.64  E-value=5.3e-15  Score=134.41  Aligned_cols=111  Identities=23%  Similarity=0.354  Sum_probs=79.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC-ceEEEEEEE--c-------------------CCeEEEEeCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFK--L-------------------GTKLCLVDLPGY  148 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-~t~~~~~~~--~-------------------~~~~~liDTpG~  148 (237)
                      +.|.|+++|++|+|||||+|+|.+..   .....+| +|+++....  .                   ...+.+|||||+
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~---v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~   79 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSA---VAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH   79 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc---cccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc
Confidence            45899999999999999999999873   2223333 444321110  0                   023889999996


Q ss_pred             CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      ..          +..+...++.   .+|++++|+|+.+++...+.+.+..+...++|+++|+||+|+.+
T Consensus        80 e~----------f~~l~~~~~~---~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        80 EA----------FTNLRKRGGA---LADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP  135 (590)
T ss_pred             Hh----------HHHHHHHHHh---hCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence            42          2222223333   39999999999988888888888888888999999999999974

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.64  E-value=3.3e-15  Score=112.86  Aligned_cols=118  Identities=25%  Similarity=0.231  Sum_probs=69.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--E-EcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F-KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~-~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ++|+++|.+|+|||||+|+|++..  ......++++.+...  . ..+  ..+.+|||||....      ...+......
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~~~   73 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK--FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY------RAIRRLYYRA   73 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC--CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc------hHHHHHHHhh
Confidence            589999999999999999999984  555666677766543  2 224  56899999995431      1112222222


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                      .......+|.+++|++...........+...... +.|+++|+||+|+....
T Consensus        74 ~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~  124 (161)
T TIGR00231        74 VESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK  124 (161)
T ss_pred             hhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch
Confidence            1111122333333333332221222222222222 78999999999997643

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04127 Rab27A Rab27a subfamily

Probab=99.64  E-value=4.7e-15  Score=115.83  Aligned_cols=113  Identities=18%  Similarity=0.148  Sum_probs=70.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE---EEEEEE----------cCCeEEEEeCCCCCCcccchHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFK----------LGTKLCLVDLPGYGFAYAKEEVK  158 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~---~~~~~~----------~~~~~~liDTpG~~~~~~~~~~~  158 (237)
                      ..+|+++|.+|||||||++++.+........+..+...   .+.+..          ....+.+|||||..         
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------   74 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE---------   74 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH---------
Confidence            36999999999999999999988732111111111111   111110          12468899999942         


Q ss_pred             HHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                       .+..+...++..   +|++++|+|..+.-+... ..++..+..    .+.|+++|+||+|+.+
T Consensus        75 -~~~~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~  134 (180)
T cd04127          75 -RFRSLTTAFFRD---AMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED  134 (180)
T ss_pred             -HHHHHHHHHhCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence             233444455544   899999999875322222 234444433    2578999999999864

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.64  E-value=5.3e-15  Score=113.48  Aligned_cols=112  Identities=19%  Similarity=0.182  Sum_probs=70.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce---EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t---~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|++|+|||||+|++++........+..+.+   ..+.+...+..+.+|||||...          +......++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~   71 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER----------YRSLAPMYY   71 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHHh
Confidence            589999999999999999999884212123333322   2233332345789999999421          122222333


Q ss_pred             hccccccEEEEEEeCCCCCCh-hHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKP-RDHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ..   +|++++|+|+...-+- ....++..+..   ...|+++|+||+|+.+
T Consensus        72 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  120 (163)
T cd01860          72 RG---AAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES  120 (163)
T ss_pred             cc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence            33   8999999998753211 11334444433   3578999999999873

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.64  E-value=6.5e-15  Score=113.81  Aligned_cols=113  Identities=19%  Similarity=0.152  Sum_probs=71.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|++|+|||||++++.+........+..+......   +......+.+|||||...          +..+...+
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~~   72 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER----------FRTITTAY   72 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHH
Confidence            47999999999999999999998742122222222222221   111234689999999532          22333344


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|+.+..+... ..++..+..   .+.|+++|+||+|+..
T Consensus        73 ~~~---ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~  122 (167)
T cd01867          73 YRG---AMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE  122 (167)
T ss_pred             hCC---CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence            433   899999999875422211 234444433   3689999999999974

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.64  E-value=2.3e-15  Score=123.15  Aligned_cols=127  Identities=20%  Similarity=0.204  Sum_probs=89.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ....|+++|.||+|||||.|.++|. .+..++....||+.-..   ......+.++||||+........ ......+...
T Consensus        71 k~L~vavIG~PNvGKStLtN~mig~-kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~-~~l~~s~lq~  148 (379)
T KOG1423|consen   71 KSLYVAVIGAPNVGKSTLTNQMIGQ-KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRR-HHLMMSVLQN  148 (379)
T ss_pred             eEEEEEEEcCCCcchhhhhhHhhCC-ccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhh-HHHHHHhhhC
Confidence            3468999999999999999999999 78889998888876532   23367799999999865322111 0111123334


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc-CCcEEEEEecCCCCChH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-~~piilv~NK~Dl~~~~  219 (237)
                      +..+...||+|++|+|++..-......++..+... .+|-++|+||.|++...
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k  201 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQK  201 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhh
Confidence            44445559999999998853333344455555443 68999999999987544

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.64  E-value=5.8e-15  Score=129.24  Aligned_cols=130  Identities=22%  Similarity=0.300  Sum_probs=90.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc-----cee---------eccCCCCceEEEEEEEc---CCeEEEEeCCCCCCccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA  153 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~---------~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~  153 (237)
                      ...+|+++|+.++|||||+++|++..     ...         .....+|+|.+......   +..+.+|||||+.+   
T Consensus        11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~---   87 (394)
T TIGR00485        11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD---   87 (394)
T ss_pred             ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH---
Confidence            34689999999999999999998431     000         01123677777643332   55699999999742   


Q ss_pred             chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEE-EEEecCCCCChHHHHH-HHHHHHHH
Q 026538          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVAR-RAMQIEEV  231 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~Dl~~~~~~~~-~~~~l~~~  231 (237)
                                +...++.....+|++++|+|+..+....+.+.+..+...++|.+ +|+||+|+.+.++..+ ..+++++.
T Consensus        88 ----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~  157 (394)
T TIGR00485        88 ----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL  157 (394)
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence                      33444444455899999999998888888888888888888865 6899999987554333 23345444


Q ss_pred             HH
Q 026538          232 IF  233 (237)
Q Consensus       232 l~  233 (237)
                      +.
T Consensus       158 l~  159 (394)
T TIGR00485       158 LS  159 (394)
T ss_pred             HH
Confidence            43

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.63  E-value=5.1e-15  Score=123.45  Aligned_cols=140  Identities=22%  Similarity=0.348  Sum_probs=88.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeecc-CCC------CceEEEE-----EEEc--CCeEEEEeCCCCCCcccchHH-
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKP------GLTQTIN-----FFKL--GTKLCLVDLPGYGFAYAKEEV-  157 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~-~~~------g~t~~~~-----~~~~--~~~~~liDTpG~~~~~~~~~~-  157 (237)
                      ++|+++|.+|+|||||+|+|++.. ..... ..+      ..+..+.     ....  ...++++|||||++....... 
T Consensus         5 fnImVvG~sG~GKTTFIntL~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    5 FNIMVVGESGLGKTTFINTLFNSD-IISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSS----------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcc-cccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            689999999999999999999974 22221 111      0111111     1111  346889999999875332211 


Q ss_pred             ---HHHHHHHHHHHHhc----------cccccEEEEEEeCC-CCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHH
Q 026538          158 ---KDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  223 (237)
Q Consensus       158 ---~~~~~~~~~~~~~~----------~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~  223 (237)
                         ......-...|+..          ...+|+++|+++++ +++.+.+.+.++.+... +++|-|+.|+|.++++++..
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaKaD~lt~~el~~  162 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAKADTLTPEELQA  162 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEESTGGGS-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEecccccCHHHHHH
Confidence               11111111222211          11268899999964 68999999999998875 89999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 026538          224 RAMQIEEVIFY  234 (237)
Q Consensus       224 ~~~~l~~~l~~  234 (237)
                      ..+.+.+.+..
T Consensus       163 ~k~~i~~~l~~  173 (281)
T PF00735_consen  163 FKQRIREDLEE  173 (281)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888887763

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.63  E-value=7.1e-15  Score=112.71  Aligned_cols=110  Identities=20%  Similarity=0.164  Sum_probs=69.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--E-EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--N-FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~-~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|++|||||||++++++...  .....+..+.+.  . +...+  ..+.+|||||...          +......
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~   68 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKF--SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER----------FRSITSS   68 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHH
Confidence            3899999999999999999998732  112222222221  1 11122  4688999999531          2233344


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|+.+..+... ..++..+..   .++|+++|+||+|+..
T Consensus        69 ~~~~---~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~  119 (164)
T smart00175       69 YYRG---AVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED  119 (164)
T ss_pred             HhCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence            4443   899999999876432222 234444433   3689999999999865

Rab GTPases are implicated in vesicle trafficking.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.63  E-value=8.2e-15  Score=116.82  Aligned_cols=109  Identities=13%  Similarity=0.134  Sum_probs=68.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEE----cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ++|+++|.+|||||||+++|++... . ....+....+.  ....    ....+.+|||||...          +..+..
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~-~-~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~----------~~~~~~   68 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIF-S-QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER----------FGGMTR   68 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC-C-CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh----------hhhhHH
Confidence            4799999999999999999998731 1 11112111121  1111    134578999999632          233444


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH-------hcCCcEEEEEecCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-------RSQTKYQVVLTKTDTV  216 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-------~~~~piilv~NK~Dl~  216 (237)
                      .|+..   ++++++|+|.+...+... ..++..+.       ..++|+++|+||+|+.
T Consensus        69 ~~~~~---a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~  123 (201)
T cd04107          69 VYYRG---AVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK  123 (201)
T ss_pred             HHhCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence            55544   899999999875422222 22333332       1468999999999996

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.63  E-value=4.9e-15  Score=116.40  Aligned_cols=111  Identities=19%  Similarity=0.209  Sum_probs=68.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-EEEE--E-cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFF--K-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-~~~~--~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .+|+++|.+|||||||+++++.... ....+..|.+.. ....  . .+..+.+|||||...      .    ..+...+
T Consensus         4 ~kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~----~~~~~~~   72 (183)
T cd04152           4 LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK------L----RPLWKSY   72 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccCCCceEEEEEECCCcHh------H----HHHHHHH
Confidence            5899999999999999999987732 211121222221 1221  1 246799999999532      1    2223333


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHH----HHHhcCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELIS----LMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~----~l~~~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|++..-+... ..++.    .....+.|+++|+||+|+..
T Consensus        73 ~~~---~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~  123 (183)
T cd04152          73 TRC---TDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN  123 (183)
T ss_pred             hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence            333   999999999875311111 11222    22334789999999999863

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PRK09866 hypothetical protein; Provisional

Probab=99.63  E-value=2.3e-14  Score=128.52  Aligned_cols=72  Identities=18%  Similarity=0.143  Sum_probs=53.1

Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcC--CcEEEEEecCCC
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDT  215 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~--~piilv~NK~Dl  215 (237)
                      ..+.++||||+..+... .+.    ..+...   ...+|+|+||+|+.......+..+++.+...+  .|+++|+||+|+
T Consensus       230 ~QIIFVDTPGIhk~~~~-~L~----k~M~eq---L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl  301 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQP-HLQ----KMLNQQ---LARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ  301 (741)
T ss_pred             CCEEEEECCCCCCccch-HHH----HHHHHH---HhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence            45899999999754221 111    112222   33399999999998877888888888888876  499999999999


Q ss_pred             CC
Q 026538          216 VF  217 (237)
Q Consensus       216 ~~  217 (237)
                      .+
T Consensus       302 ~d  303 (741)
T PRK09866        302 QD  303 (741)
T ss_pred             CC
Confidence            75

>cd04140 ARHI_like ARHI subfamily

Probab=99.63  E-value=6.7e-15  Score=113.51  Aligned_cols=112  Identities=14%  Similarity=0.077  Sum_probs=68.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCC-ceEEE-EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-~t~~~-~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+|+++|.+|||||||++++++........+..+ +.... ........+.+|||||...          +..+...++.
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~   71 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQ----------FPAMQRLSIS   71 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCc----------chHHHHHHhh
Confidence            5899999999999999999998732111111111 11111 1111235688999999753          1122223333


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHHh------cCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~piilv~NK~Dl~~  217 (237)
                      .   ++++++|+|.+...+... ..++..+..      .++|+++|+||+|+..
T Consensus        72 ~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  122 (165)
T cd04140          72 K---GHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH  122 (165)
T ss_pred             c---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence            2   899999999876433222 334444432      3689999999999965

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=2.1e-15  Score=115.99  Aligned_cols=117  Identities=18%  Similarity=0.171  Sum_probs=79.9

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce---EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t---~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      +..++|+++|.+|||||.|+.++.+...........|..   +.+.......++.+|||+|.          +.+..+..
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ----------ERFrtit~   76 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ----------ERFRTITS   76 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeecccc----------HHHhhhhH
Confidence            346899999999999999999999874222222222211   11122222467999999994          23557788


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---CCcEEEEEecCCCCChH
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~piilv~NK~Dl~~~~  219 (237)
                      .|++.   +++|++|+|.....+... ..|+..+.+.   ++|.++|+||||+.+..
T Consensus        77 syYR~---ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~  130 (205)
T KOG0084|consen   77 SYYRG---AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKR  130 (205)
T ss_pred             hhccC---CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhhe
Confidence            88887   999999999875433222 3456666543   68999999999997543

>cd01862 Rab7 Rab7 subfamily

Probab=99.63  E-value=1.7e-14  Score=111.53  Aligned_cols=112  Identities=15%  Similarity=0.087  Sum_probs=67.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE---EEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~---~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|++|||||||+|++++...........+.+.   .+........+.+|||||...          +..+...++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~   70 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER----------FQSLGVAFY   70 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH----------HHhHHHHHh
Confidence            3799999999999999999998731111111112111   111111134577999999532          222333444


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHH-Hh------cCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~~------~~~piilv~NK~Dl~~  217 (237)
                      ..   +|++++++|+.++.+... ..+...+ ..      .++|+++|+||+|+..
T Consensus        71 ~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  123 (172)
T cd01862          71 RG---ADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE  123 (172)
T ss_pred             cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence            33   899999999876432111 1222222 11      2689999999999973

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04136 Rap_like Rap-like subfamily

Probab=99.63  E-value=4.8e-15  Score=113.64  Aligned_cols=109  Identities=16%  Similarity=0.121  Sum_probs=68.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-----EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ++|+++|.+|||||||++++.....   .....+++.+     +........+.+|||||...          +..+...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ----------FTAMRDL   68 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC---CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------cchHHHH
Confidence            5899999999999999999997631   2222222221     11111134578899999643          1223334


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      |+..   ++++++|+|.+...+... ..++..+..    .+.|+++|+||+|+..
T Consensus        69 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  120 (163)
T cd04136          69 YIKN---GQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED  120 (163)
T ss_pred             Hhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            4433   899999999875322221 233344432    3689999999999865

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04113 Rab4 Rab4 subfamily

Probab=99.63  E-value=5.7e-15  Score=113.21  Aligned_cols=112  Identities=16%  Similarity=0.093  Sum_probs=70.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|++|||||||+++|++........+..+.....   .+......+.+|||||...          +......++
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~   70 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER----------FRSVTRSYY   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHH----------HHHhHHHHh
Confidence            379999999999999999999874212222222221111   1111135688999999532          223333444


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~  217 (237)
                      ..   +|++++|+|.+...+... ..++..+.   ..+.|+++|+||+|+..
T Consensus        71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  119 (161)
T cd04113          71 RG---AAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD  119 (161)
T ss_pred             cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence            33   899999999876433222 23434333   24789999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01863 Rab18 Rab18 subfamily

Probab=99.63  E-value=5e-15  Score=113.44  Aligned_cols=111  Identities=22%  Similarity=0.223  Sum_probs=70.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|++|||||||+|+|++........+..+.+........   ...+.+|||||...          +......++
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~   70 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER----------FRTLTSSYY   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHHh
Confidence            47999999999999999999987422223344444333222211   35689999999532          122223333


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTV  216 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~  216 (237)
                      .   .+|++++|+|.+...+... ..++..+.    ..+.|+++|+||+|+.
T Consensus        71 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~  119 (161)
T cd01863          71 R---GAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE  119 (161)
T ss_pred             C---CCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence            3   3899999999875422222 22333333    2368899999999997

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.63  E-value=5.1e-15  Score=113.45  Aligned_cols=111  Identities=20%  Similarity=0.198  Sum_probs=70.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-----EEE--EcCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-----~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      .+|+++|.+|+|||||++++++....  ....+....+.     ...  .....+.+|||||..          .+..+.
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~   68 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFT--KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE----------EFDAIT   68 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH----------HHHHhH
Confidence            37999999999999999999987321  11122222222     111  113568999999942          233444


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~~  218 (237)
                      ..++..   +|++++|+|....-+... ..++..+..  .++|+++|+||+|+...
T Consensus        69 ~~~~~~---~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  121 (162)
T cd04106          69 KAYYRG---AQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ  121 (162)
T ss_pred             HHHhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc
Confidence            555544   899999999875322211 233333332  37899999999998653

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.63  E-value=7.7e-15  Score=136.76  Aligned_cols=130  Identities=19%  Similarity=0.239  Sum_probs=92.4

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccccee----eccC------------CCCceEEE---EEEEcCCeEEEEeCCCCCC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV----RTSD------------KPGLTQTI---NFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~----~~~~------------~~g~t~~~---~~~~~~~~~~liDTpG~~~  150 (237)
                      .+..+|+++|++|+|||||+|+|+...+..    .+.+            .+|+|.+.   .+.+.+..+.+|||||+.+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   87 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD   87 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence            356799999999999999999997542111    1111            34566554   3444578899999999864


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                      -  .        .....++.   .+|++++|+|+..+....+..++..+...++|+++|+||+|+.... ..+.++.+++
T Consensus        88 ~--~--------~~~~~~l~---~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~i~~  153 (689)
T TIGR00484        88 F--T--------VEVERSLR---VLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN-FLRVVNQIKQ  153 (689)
T ss_pred             h--h--------HHHHHHHH---HhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence            1  0        11112222   2899999999998888888888888888899999999999997543 4556666666


Q ss_pred             HHH
Q 026538          231 VIF  233 (237)
Q Consensus       231 ~l~  233 (237)
                      .++
T Consensus       154 ~l~  156 (689)
T TIGR00484       154 RLG  156 (689)
T ss_pred             HhC
Confidence            554

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd00879 Sar1 Sar1 subfamily

Probab=99.63  E-value=5.5e-15  Score=116.55  Aligned_cols=111  Identities=22%  Similarity=0.259  Sum_probs=69.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      .++|+++|++|||||||+++|.+.. .....+..+.+. ..+...+..+.+|||||...      ..    .....++..
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~-~~~~~~T~~~~~-~~i~~~~~~~~l~D~~G~~~------~~----~~~~~~~~~   86 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDR-LAQHVPTLHPTS-EELTIGNIKFKTFDLGGHEQ------AR----RLWKDYFPE   86 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC-CcccCCccCcce-EEEEECCEEEEEEECCCCHH------HH----HHHHHHhcc
Confidence            4799999999999999999999873 222222222221 12223367899999999532      11    222333333


Q ss_pred             cccccEEEEEEeCCCC--CChhHHHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538          172 RVSLKRVCLLIDTKWG--VKPRDHELISLME---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~---~~~~piilv~NK~Dl~~  217 (237)
                         ++++++|+|+++.  +......+...+.   ..+.|+++|+||+|+..
T Consensus        87 ---ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~  134 (190)
T cd00879          87 ---VDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG  134 (190)
T ss_pred             ---CCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence               8999999998753  1112222222222   24689999999999864

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01865 Rab3 Rab3 subfamily

Probab=99.63  E-value=7.3e-15  Score=113.29  Aligned_cols=113  Identities=17%  Similarity=0.157  Sum_probs=69.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|.+|||||||++++.+........+..+.+... .....  ...+.+|||||...          +..+...++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~----------~~~~~~~~~   71 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER----------YRTITTAYY   71 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHHc
Confidence            589999999999999999999874211111221211111 11111  35689999999532          222333343


Q ss_pred             hccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          170 STRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      ..   +|++++|+|.+..-+.. -..+++.+..   ...|+++|+||+|+.+.
T Consensus        72 ~~---~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~  121 (165)
T cd01865          72 RG---AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE  121 (165)
T ss_pred             cC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence            33   99999999987532111 1334444443   25789999999999653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04116 Rab9 Rab9 subfamily

Probab=99.62  E-value=5e-15  Score=114.60  Aligned_cols=113  Identities=15%  Similarity=0.091  Sum_probs=68.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE---EEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~---~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...+|+++|.+|||||||++++++........+..+...   .+.+......+.+|||||...          +..+...
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~   73 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER----------FRSLRTP   73 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH----------HHHhHHH
Confidence            457999999999999999999997632111112222111   111111234678999999421          2334444


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHH-------hcCCcEEEEEecCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-------RSQTKYQVVLTKTDTV  216 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-------~~~~piilv~NK~Dl~  216 (237)
                      ++..   +|++++|+|....-+... ..+...+.       ..++|+++|+||+|+.
T Consensus        74 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  127 (170)
T cd04116          74 FYRG---SDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP  127 (170)
T ss_pred             HhcC---CCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence            4443   899999998765321111 22333222       1357999999999986

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.62  E-value=8.6e-15  Score=113.49  Aligned_cols=115  Identities=20%  Similarity=0.147  Sum_probs=69.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..+|+++|++|||||||++++++........+..+...... +...  ...+.+|||||...      ..   ..+...+
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~---~~~~~~~   72 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER------FR---KSMVQHY   72 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHH------HH---HhhHHHh
Confidence            36899999999999999999987731111111111111111 1111  35689999999532      11   1233344


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~  218 (237)
                      +..   +|++++|+|...+.+... ..++..+..    .++|+++|+||+|+...
T Consensus        73 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  124 (170)
T cd04115          73 YRN---VHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ  124 (170)
T ss_pred             hcC---CCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh
Confidence            433   899999999876433222 234444433    35899999999998643

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.62  E-value=1.5e-14  Score=131.82  Aligned_cols=110  Identities=25%  Similarity=0.411  Sum_probs=78.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCC-CceEEEEEEEc---------C------------CeEEEEeCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKL---------G------------TKLCLVDLPGY  148 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~-g~t~~~~~~~~---------~------------~~~~liDTpG~  148 (237)
                      +.|.|+++|++|+|||||+|+|.+..   .....+ +.|+++..+..         +            ..+++|||||+
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~---v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~   81 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTA---VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH   81 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcc---cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence            45899999999999999999998762   233333 24443311110         0            12789999997


Q ss_pred             CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      ..          +..+...++   ..+|++++|+|+..++.......+..+...++|+++|+||+|+.
T Consensus        82 e~----------f~~~~~~~~---~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~  136 (586)
T PRK04004         82 EA----------FTNLRKRGG---ALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI  136 (586)
T ss_pred             HH----------HHHHHHHhH---hhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence            43          122222222   23899999999998888888888888888899999999999985

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.62  E-value=8.1e-15  Score=112.98  Aligned_cols=111  Identities=16%  Similarity=0.143  Sum_probs=69.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|++|||||||++++++... . ....+..+.+..   +..  ....+.+|||||...          +..+...
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~   70 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTY-T-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER----------FRTITSS   70 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh----------HHHHHHH
Confidence            5899999999999999999998732 1 122222222221   111  134689999999532          2233344


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      ++..   +|++++|+|+++.-+... ..++..+..   .+.|+++|+||+|+...
T Consensus        71 ~~~~---~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~  122 (166)
T cd01869          71 YYRG---AHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK  122 (166)
T ss_pred             HhCc---CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence            4443   899999999875321111 234444433   35899999999998643

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.62  E-value=6.5e-15  Score=113.17  Aligned_cols=108  Identities=15%  Similarity=0.102  Sum_probs=66.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +|+++|++|||||||+|++++...   .....+++.+.   ....  ....+.+|||||...          +..+...+
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----------~~~~~~~~   68 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHF---VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE----------FSAMRDQY   68 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcC---CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------chHHHHHH
Confidence            799999999999999999998731   12222222211   1111  134678999999643          11223333


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|+...-+... ..+...+.    ..+.|+++|+||+|+.+
T Consensus        69 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~  119 (164)
T smart00173       69 MRT---GEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES  119 (164)
T ss_pred             Hhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            333   899999999875322111 22222222    23689999999999864

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.62  E-value=6.4e-15  Score=115.00  Aligned_cols=110  Identities=15%  Similarity=0.079  Sum_probs=70.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-E--EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-~--~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|||||||++++.....   .....++..+ .  .+...+  ..+.||||||...          +..+...
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f---~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED----------YDRLRPL   68 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc----------hhhhhhh
Confidence            5899999999999999999998732   1222222211 1  111122  5688999999643          1122223


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHH--HHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~piilv~NK~Dl~~~  218 (237)
                      ++..   +|++++|+|.++..+....  .++..+..  .+.|+++|+||+|+...
T Consensus        69 ~~~~---a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~  120 (175)
T cd01874          69 SYPQ---TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD  120 (175)
T ss_pred             hccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhC
Confidence            3333   8999999998764333222  35555543  26899999999998654

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PLN03118 Rab family protein; Provisional

Probab=99.62  E-value=9.9e-15  Score=117.25  Aligned_cols=114  Identities=21%  Similarity=0.176  Sum_probs=72.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|||||||+++|++. ......+..+.+..+.....   ...+.+|||||...          +..+...
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~   81 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISS-SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER----------FRTLTSS   81 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC-CCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh----------hHHHHHH
Confidence            4579999999999999999999987 33333333333332222222   34689999999643          2233344


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHH--HHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~----~~~piilv~NK~Dl~~~  218 (237)
                      ++..   +|++++|+|.+...+....  .+...+..    .+.|+++|+||+|+...
T Consensus        82 ~~~~---~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~  135 (211)
T PLN03118         82 YYRN---AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE  135 (211)
T ss_pred             HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            4443   8999999998764222222  13233322    35789999999998643

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.62  E-value=1.5e-14  Score=109.73  Aligned_cols=111  Identities=15%  Similarity=0.168  Sum_probs=68.5

Q ss_pred             EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      |+++|++|||||||+|+|.+...  .....+....+. .....+..+.+|||||...          +......++..  
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~~--   67 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQF--SEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPR----------FRSMWERYCRG--   67 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCC--CcCccCCCCcceEEEEECCEEEEEEECCCCHh----------HHHHHHHHHhc--
Confidence            78999999999999999998842  122222222221 1222356789999999632          22233334333  


Q ss_pred             cccEEEEEEeCCCCCChh-HHHHHHHHH----hcCCcEEEEEecCCCCChHH
Q 026538          174 SLKRVCLLIDTKWGVKPR-DHELISLME----RSQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       174 ~~d~v~~vvd~~~~~~~~-~~~~~~~l~----~~~~piilv~NK~Dl~~~~~  220 (237)
                       +|++++|+|+....... ....+..+.    ..+.|+++|+||+|+.....
T Consensus        68 -~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~  118 (159)
T cd04159          68 -VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS  118 (159)
T ss_pred             -CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC
Confidence             89999999987531111 112222221    14689999999999876543

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.62  E-value=1.3e-14  Score=111.46  Aligned_cols=113  Identities=16%  Similarity=0.122  Sum_probs=70.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce-EEE--EEE----EcCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI--NFF----KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t-~~~--~~~----~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      .+|+++|.+|||||||+++|..... ........++ .++  ...    .....+.+|||||..          .+..+.
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~   69 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGA-VFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE----------LYSDMV   69 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC-CcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH----------HHHHHH
Confidence            3799999999999999999986411 1112222222 121  111    123568999999942          223344


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHhc--CCcEEEEEecCCCCChH
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS--QTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~--~~piilv~NK~Dl~~~~  219 (237)
                      ..++.   .+|++++|+|.++..+.. ...++..+...  +.|+++|+||+|+.+..
T Consensus        70 ~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  123 (164)
T cd04101          70 SNYWE---SPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA  123 (164)
T ss_pred             HHHhC---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence            44443   399999999987542221 13445554433  58999999999986543

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PRK12739 elongation factor G; Reviewed

Probab=99.62  E-value=6e-15  Score=137.44  Aligned_cols=130  Identities=18%  Similarity=0.212  Sum_probs=93.4

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccce----eecc------------CCCCceEEE---EEEEcCCeEEEEeCCCCCC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTS------------DKPGLTQTI---NFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~----~~~~------------~~~g~t~~~---~~~~~~~~~~liDTpG~~~  150 (237)
                      ....+|+++|++|+|||||+++|+...+.    ..+.            ..+|+|.+.   .+.+.+..++++||||+.+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            35679999999999999999999753210    1111            134556544   3444578899999999742


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                                   +..........+|++++|+|+..++...+..++..+...++|+++++||+|+.... ....++.+++
T Consensus        86 -------------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~-~~~~~~~i~~  151 (691)
T PRK12739         86 -------------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGAD-FFRSVEQIKD  151 (691)
T ss_pred             -------------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence                         11112222233899999999999988888899999888899999999999998543 4556666666


Q ss_pred             HHH
Q 026538          231 VIF  233 (237)
Q Consensus       231 ~l~  233 (237)
                      .++
T Consensus       152 ~l~  154 (691)
T PRK12739        152 RLG  154 (691)
T ss_pred             HhC
Confidence            554

>cd04122 Rab14 Rab14 subfamily

Probab=99.62  E-value=9.9e-15  Score=112.61  Aligned_cols=110  Identities=16%  Similarity=0.162  Sum_probs=69.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCc---eEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---TQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~---t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .+|+++|++|||||||++++.+...   ....+.+   .........   ...+.+|||||...          +..+..
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~   69 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKF---MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER----------FRAVTR   69 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC---CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHH
Confidence            5899999999999999999998731   2222222   111111111   34689999999531          223344


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      .++..   ++++++|+|.++..+... ..++..+..   .+.|+++|+||+|+...
T Consensus        70 ~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~  122 (166)
T cd04122          70 SYYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ  122 (166)
T ss_pred             HHhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence            44443   899999999876422221 233333322   35789999999998644

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04142 RRP22 RRP22 subfamily

Probab=99.62  E-value=9.2e-15  Score=116.37  Aligned_cols=118  Identities=16%  Similarity=0.092  Sum_probs=70.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|||||||++++++... .. ...|.++.+.   .+...+  ..+.+|||||.....  ......+......
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--~~~~~e~~~~~~~   76 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEF-PE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP--GTAGQEWMDPRFR   76 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCC-Cc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCC--ccchhHHHHHHHh
Confidence            3799999999999999999998732 11 1222222221   111223  467899999975311  1111112111112


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHH------hcCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME------RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~------~~~~piilv~NK~Dl~~  217 (237)
                      +   ...+|++++|+|++.+.+... ..+.+.+.      ..++|+++|+||+|+..
T Consensus        77 ~---~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~  130 (198)
T cd04142          77 G---LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR  130 (198)
T ss_pred             h---hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence            2   234999999999876432222 23333332      24689999999999964

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04175 Rap1 Rap1 subgroup

Probab=99.61  E-value=7.4e-15  Score=112.98  Aligned_cols=109  Identities=14%  Similarity=0.079  Sum_probs=68.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|||||||+++++...   .....++++.+   ..+...  ...+.+|||||...          +..+...
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ----------FTAMRDL   68 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCC---CCcccCCcchheEEEEEEECCEEEEEEEEECCCccc----------chhHHHH
Confidence            589999999999999999998662   22222233322   111112  34577999999642          2233334


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|.+..-+... ..++..+.    ..+.|+++|+||+|+..
T Consensus        69 ~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  120 (164)
T cd04175          69 YMKN---GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED  120 (164)
T ss_pred             HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence            4444   899999999764322221 23333332    23689999999999964

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.61  E-value=1.7e-14  Score=112.08  Aligned_cols=110  Identities=16%  Similarity=0.174  Sum_probs=68.3

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +|+++|.+|||||||++++++.......  .+....+..  ..   .....+.+|||||...          +..+...+
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~   69 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNY--KATIGVDFEMERFEILGVPFSLQLWDTAGQER----------FKCIASTY   69 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEeCCChHH----------HHhhHHHH
Confidence            7899999999999999999987321111  121112221  11   1134689999999532          23334444


Q ss_pred             HhccccccEEEEEEeCCCCCCh-hHHHHHHHHHhc----CCcEEEEEecCCCCCh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS----QTKYQVVLTKTDTVFP  218 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~~----~~piilv~NK~Dl~~~  218 (237)
                      +..   +|++++|+|++..-+. ....++..+...    ..|+++|+||+|+.+.
T Consensus        70 ~~~---ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~  121 (170)
T cd04108          70 YRG---AQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP  121 (170)
T ss_pred             hcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence            443   9999999998753111 123445444322    3568999999998654

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04110 Rab35 Rab35 subfamily

Probab=99.61  E-value=1.7e-14  Score=114.90  Aligned_cols=115  Identities=20%  Similarity=0.164  Sum_probs=71.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|++|||||||++++.+........+..+......... .  ...+.+|||||...          +..+...
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~   74 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER----------FRTITST   74 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchh----------HHHHHHH
Confidence            457999999999999999999998731111112222111111111 1  24688999999532          2233344


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~~  218 (237)
                      ++..   ++++++|+|++...+... ..++..+..  ...|+++|+||+|+.+.
T Consensus        75 ~~~~---a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~  125 (199)
T cd04110          75 YYRG---THGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER  125 (199)
T ss_pred             HhCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence            4443   899999999875422221 234444433  25899999999998653

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.61  E-value=1.1e-14  Score=114.59  Aligned_cols=110  Identities=15%  Similarity=0.095  Sum_probs=68.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ++|+++|.+|+|||||++++++...  .....+....+.  .....   ...+.+|||||...          +..+...
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~--~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKF--PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE----------YDRLRPL   68 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcC--CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh----------HHHHHHH
Confidence            3799999999999999999998731  111112111121  11111   24588999999532          2222333


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHH--HHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                      ++.   .+|++++|+|.++..+....  .++..+..  .+.|+++|+||+|+..
T Consensus        69 ~~~---~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  119 (187)
T cd04132          69 SYP---DVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK  119 (187)
T ss_pred             hCC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence            333   39999999998764333222  24433332  3689999999999864

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=99.61  E-value=1.6e-14  Score=114.13  Aligned_cols=108  Identities=15%  Similarity=0.187  Sum_probs=67.3

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +|+++|.+|||||||+++|+... .  ....++++.+   ......+  ..+.+|||||...          +..+...|
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~-f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~   67 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNH-F--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE----------YTALRDQW   67 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC-C--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchh----------hHHHHHHH
Confidence            48999999999999999998763 1  1222222211   1111122  4588999999532          22233344


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh------cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|.+...+... ..++..+..      .+.|+++|+||+|+..
T Consensus        68 ~~~---ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~  120 (190)
T cd04144          68 IRE---GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY  120 (190)
T ss_pred             HHh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence            443   899999999875432222 234444432      3589999999999864

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00053 DYNc Dynamin, GTPase

Probab=99.61  E-value=7.6e-14  Score=113.51  Aligned_cols=80  Identities=18%  Similarity=0.244  Sum_probs=61.6

Q ss_pred             CeEEEEeCCCCCCc---ccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhcCCcEEEEEecC
Q 026538          138 TKLCLVDLPGYGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKT  213 (237)
Q Consensus       138 ~~~~liDTpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~piilv~NK~  213 (237)
                      ..++++||||+...   .........+..++..|+...  .+++++|+|+..++...+ ..+.+.+...+.|+++|+||+
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~--~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~  202 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKE--ECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKL  202 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCc--cCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECC
Confidence            56999999999643   112445566777787887652  469999999987777766 588888888899999999999


Q ss_pred             CCCChH
Q 026538          214 DTVFPI  219 (237)
Q Consensus       214 Dl~~~~  219 (237)
                      |...+.
T Consensus       203 D~~~~~  208 (240)
T smart00053      203 DLMDEG  208 (240)
T ss_pred             CCCCcc
Confidence            998643

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PTZ00369 Ras-like protein; Provisional

Probab=99.61  E-value=7.4e-15  Score=115.95  Aligned_cols=113  Identities=12%  Similarity=0.046  Sum_probs=70.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .++|+++|.+|||||||++++++........+..+.+...  .+......+.+|||||..+          +..+...|+
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~l~~~~~   74 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE----------YSAMRDQYM   74 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc----------chhhHHHHh
Confidence            4799999999999999999999873211112222222111  1111234578999999653          222333444


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      ..   +|++++|+|+++..+... ..+...+..    .+.|+++|+||+|+..
T Consensus        75 ~~---~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~  124 (189)
T PTZ00369         75 RT---GQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS  124 (189)
T ss_pred             hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            43   899999999876432111 233333322    3689999999999854

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.61  E-value=1.7e-14  Score=114.99  Aligned_cols=113  Identities=18%  Similarity=0.135  Sum_probs=72.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE--------cCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--------LGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~--------~~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      .+|+++|.+|||||||++++++........+..|.+.......        ....+.+|||+|...          +..+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~----------~~~l   70 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES----------VKST   70 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh----------HHHH
Confidence            3799999999999999999998742121122222222221111        124588999999532          2344


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----------------------cCCcEEEEEecCCCCCh
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----------------------SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----------------------~~~piilv~NK~Dl~~~  218 (237)
                      ...|+..   +|++++|+|.+..-+... ..|+..+..                      .++|+++|+||+|+.+.
T Consensus        71 ~~~~yr~---ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102          71 RAVFYNQ---VNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             HHHHhCc---CCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence            4455554   999999999876533322 244444432                      25899999999999754

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.61  E-value=1.8e-14  Score=131.44  Aligned_cols=112  Identities=27%  Similarity=0.334  Sum_probs=81.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceee----c----------cCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccch
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVR----T----------SDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKE  155 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~----~----------~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~  155 (237)
                      .+|+++|+.++|||||+++|+...+...    +          ....|.|...   .+.+.+..+++|||||+.+     
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D-----   76 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD-----   76 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH-----
Confidence            4899999999999999999986421110    0          1123444443   3445578899999999743     


Q ss_pred             HHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                           |......++..   +|++++|+|+..+...+...++..+...++|+++|+||+|+..
T Consensus        77 -----F~~ev~~~l~~---aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~  130 (594)
T TIGR01394        77 -----FGGEVERVLGM---VDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPS  130 (594)
T ss_pred             -----HHHHHHHHHHh---CCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCC
Confidence                 11222233332   9999999999988888888888888888999999999999864

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04109 Rab28 Rab28 subfamily

Probab=99.61  E-value=1.3e-14  Score=116.94  Aligned_cols=110  Identities=20%  Similarity=0.210  Sum_probs=69.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--EE----cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .+|+++|.+|||||||+|+|++...  .....+..+.+...  ..    ....+.||||||...          +..+..
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~--~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~----------~~~l~~   68 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGF--GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI----------GGKMLD   68 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH----------HHHHHH
Confidence            3799999999999999999998731  11222222223211  11    135688999999531          233444


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc------CCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS------QTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~------~~piilv~NK~Dl~~  217 (237)
                      .|+..   +|++++|+|.+..-+... ..++..+...      +.|+++|+||+|+..
T Consensus        69 ~~~~~---ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~  123 (215)
T cd04109          69 KYIYG---AHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH  123 (215)
T ss_pred             HHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence            55443   999999999875422222 2344444432      357999999999964

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04131 Rnd Rnd subfamily

Probab=99.61  E-value=9.6e-15  Score=114.34  Aligned_cols=109  Identities=16%  Similarity=0.163  Sum_probs=70.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce-EE----EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QT----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t-~~----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|||||||++++.+...   .....+|. ..    +........+.+|||||...          +..+...
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~----------~~~~~~~   68 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCY---PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPY----------YDNVRPL   68 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcC---CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchh----------hhhcchh
Confidence            4899999999999999999998732   12222221 11    11111235688999999532          2223333


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                      |+..   +|++++|+|.++.-+...  ..|+..+..  .+.|+++|+||+|+..
T Consensus        69 ~~~~---a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~  119 (178)
T cd04131          69 CYPD---SDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT  119 (178)
T ss_pred             hcCC---CCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence            4433   899999999876543333  245555543  2689999999999853

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.60  E-value=2.7e-14  Score=111.11  Aligned_cols=112  Identities=15%  Similarity=0.083  Sum_probs=69.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce--EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t--~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+|+++|.+|||||||++++.+........+..+..  ..+........+.+|||||...          +..+...++.
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~l~~~~~~   72 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE----------FTAMRDQYMR   72 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchh----------hHHHhHHHhh
Confidence            589999999999999999999773211111111111  1111111134688999999532          2334444444


Q ss_pred             ccccccEEEEEEeCCCCCChhHH-HHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      .   +|++++|+|.++..+.... .+...+..    .++|+++|+||+|+..
T Consensus        73 ~---~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~  121 (172)
T cd04141          73 C---GEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES  121 (172)
T ss_pred             c---CCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence            3   8999999998765443332 23333332    3689999999999854

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.60  E-value=1e-14  Score=111.79  Aligned_cols=109  Identities=14%  Similarity=0.077  Sum_probs=68.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-----EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|++|||||||+++++...   ......+++.+     .........+.+|||||...          +..+...
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~   67 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED----------YAAIRDN   67 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC---CccccCCcchhhEEEEEEECCEEEEEEEEECCChhh----------hhHHHHH
Confidence            389999999999999999999773   22232332221     11111235689999999642          2233334


Q ss_pred             HHhccccccEEEEEEeCCCCCChh-HHHHHHHH-H---hcCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLM-E---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l-~---~~~~piilv~NK~Dl~~  217 (237)
                      ++..   ++++++++|....-+.. ...+...+ .   ..++|+++|+||+|+..
T Consensus        68 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~  119 (164)
T cd04139          68 YHRS---GEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED  119 (164)
T ss_pred             Hhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence            4443   79999999976431111 12222222 2   24799999999999975

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.60  E-value=1.2e-14  Score=114.11  Aligned_cols=113  Identities=16%  Similarity=0.123  Sum_probs=71.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC--ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG--LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g--~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ...+|+++|.+|||||||++++..........+..+  .+..+........+.+|||+|...          +..+...|
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~----------~~~~~~~~   73 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY----------YDNVRPLS   73 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchh----------hHhhhhhh
Confidence            346899999999999999999998732111111111  111111111235689999999532          23333444


Q ss_pred             HhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTV  216 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~  216 (237)
                      +..   +|++++|+|.+...+...  ..|+..+...  +.|+++|+||+|+.
T Consensus        74 ~~~---ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~  122 (182)
T cd04172          74 YPD---SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR  122 (182)
T ss_pred             cCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence            444   899999999876533333  2455555432  68999999999985

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04120 Rab12 Rab12 subfamily

Probab=99.60  E-value=1.1e-14  Score=116.09  Aligned_cols=109  Identities=17%  Similarity=0.237  Sum_probs=70.8

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCC-CCceEEEE--EEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTIN--FFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~-~g~t~~~~--~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .|+++|..|||||||++++.....   .... +..+.+..  ... .  ...+.+|||+|...          +..+...
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f---~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~----------~~~l~~~   68 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTF---CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQER----------FNSITSA   68 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCC---CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchh----------hHHHHHH
Confidence            589999999999999999997632   1111 11122221  111 1  36689999999532          3344555


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      |+..   +|++++|+|.++.-+... ..++..+..   .+.|+++|+||+|+...
T Consensus        69 y~~~---ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~  120 (202)
T cd04120          69 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD  120 (202)
T ss_pred             HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence            6655   999999999876433222 234444443   36899999999998643

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.60  E-value=6.9e-15  Score=134.32  Aligned_cols=124  Identities=24%  Similarity=0.232  Sum_probs=83.2

Q ss_pred             cCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccc
Q 026538           99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSL  175 (237)
Q Consensus        99 G~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (237)
                      |.+|||||||+|+|++..  ..+++.+|+|.+...   ...+..+.+|||||..+-..... .   +...+.|+.. ..+
T Consensus         1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~-~---e~v~~~~l~~-~~a   73 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL-E---EEVARDYLLN-EKP   73 (591)
T ss_pred             CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch-H---HHHHHHHHhh-cCC
Confidence            899999999999999984  467889999988643   23467799999999754211111 0   1223333332 348


Q ss_pred             cEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538          176 KRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV  231 (237)
Q Consensus       176 d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~  231 (237)
                      |++++|+|+++.  +.......++.+.++|+++|+||+|+.+........+.+.+.
T Consensus        74 DvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~  127 (591)
T TIGR00437        74 DLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEER  127 (591)
T ss_pred             CEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHH
Confidence            999999998752  333445555666789999999999986433332233444443

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.60  E-value=1.7e-14  Score=117.18  Aligned_cols=113  Identities=17%  Similarity=0.132  Sum_probs=72.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC--ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG--LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g--~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ...+|+++|.+|||||||++++++........+..+  .+..+........+.||||+|...          +..+...|
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~----------~~~~~~~~   81 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPY----------YDNVRPLC   81 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchh----------hHHHHHHH
Confidence            346899999999999999999997732111111111  111111212246689999999532          23344445


Q ss_pred             HhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTV  216 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~  216 (237)
                      +..   +|++++|+|.+...+...  ..|+..+..  .+.|+++|+||+|+.
T Consensus        82 ~~~---ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~  130 (232)
T cd04174          82 YSD---SDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR  130 (232)
T ss_pred             cCC---CcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence            544   999999999876543332  345555543  268999999999985

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.60  E-value=1.1e-14  Score=117.74  Aligned_cols=115  Identities=12%  Similarity=0.061  Sum_probs=74.0

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ...++|+++|.+|||||||+++++.........+..|.+.... +..  ....+.+|||||...          +..+..
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~   80 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRD   80 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hhhhhH
Confidence            3557999999999999999999876632222333333332221 111  235789999999642          223334


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                      .|+..   ++++++|+|.+...+... ..|+..+..  .+.|+++|+||+|+..
T Consensus        81 ~~~~~---~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~  131 (219)
T PLN03071         81 GYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (219)
T ss_pred             HHccc---ccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence            44443   899999999876432222 244444432  3689999999999853

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.60  E-value=1.1e-14  Score=112.62  Aligned_cols=111  Identities=13%  Similarity=0.099  Sum_probs=68.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-EEEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|.+|||||||+++++.........+..+.... ..+..  ....+.+|||||....          ..+...++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~   70 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF----------GGLRDGYY   70 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhh----------ccccHHHh
Confidence            48999999999999999999866311112222221111 11111  2356899999996431          12222333


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHHhc--CCcEEEEEecCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTV  216 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~piilv~NK~Dl~  216 (237)
                      .   .+|++++|+|.+...+... ..++..+...  ++|+++|+||+|+.
T Consensus        71 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~  117 (166)
T cd00877          71 I---GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK  117 (166)
T ss_pred             c---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence            3   2899999999876432222 2344444432  69999999999986

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04118 Rab24 Rab24 subfamily

Probab=99.60  E-value=1.7e-14  Score=114.07  Aligned_cols=112  Identities=16%  Similarity=0.172  Sum_probs=69.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhccccee-eccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVV-RTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~-~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .+|+++|.+|+|||||++++++..... ...+..+.+........ +  ..+.+|||||...          +..+...+
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~   70 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER----------YEAMSRIY   70 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHhh
Confidence            379999999999999999999874211 11222221111111222 2  4567999999532          12223333


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|.+...+... ..++..+...  +.|+++|+||+|+..
T Consensus        71 ~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  119 (193)
T cd04118          71 YRG---AKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE  119 (193)
T ss_pred             cCC---CCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence            333   899999999875422211 3455555443  689999999999864

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01882 BMS1 Bms1

Probab=99.60  E-value=7.2e-14  Score=113.35  Aligned_cols=124  Identities=19%  Similarity=0.275  Sum_probs=84.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ....|+++|.+|+|||||+|+|++...........|+. .+ ....+..+.++||||..        .    .++.    
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~--------~----~~l~----   99 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI--------N----AMID----   99 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH--------H----HHHH----
Confidence            34578999999999999999999863222333334431 11 22357789999999842        1    1111    


Q ss_pred             ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEE-EEEecCCCCChH-HHHHHHHHHHHHH
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPI-DVARRAMQIEEVI  232 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~Dl~~~~-~~~~~~~~l~~~l  232 (237)
                      ....+|++++|+|+..++...+..++..+...+.|.+ +|+||+|+.... ......+.+++.+
T Consensus       100 ~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~  163 (225)
T cd01882         100 IAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRF  163 (225)
T ss_pred             HHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHH
Confidence            1123899999999998888888888888887788854 599999998433 3445555555533

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.60  E-value=1.1e-14  Score=111.92  Aligned_cols=103  Identities=22%  Similarity=0.281  Sum_probs=65.3

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      +|+++|.+|+|||||+|+|.+...   ..   ..|..+.+...    .+|||||+....  .   +....+..    ...
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~---~~---~~~~~v~~~~~----~~iDtpG~~~~~--~---~~~~~~~~----~~~   63 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT---LA---RKTQAVEFNDK----GDIDTPGEYFSH--P---RWYHALIT----TLQ   63 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc---cC---ccceEEEECCC----CcccCCccccCC--H---HHHHHHHH----HHh
Confidence            799999999999999999998731   11   13333333221    379999974321  1   11122221    123


Q ss_pred             cccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      .+|++++|+|++.+.+.....+...  ..+.|+++++||+|+..
T Consensus        64 ~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~  105 (158)
T PRK15467         64 DVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD  105 (158)
T ss_pred             cCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc
Confidence            4999999999886544333333322  13579999999999854

>PLN03110 Rab GTPase; Provisional

Probab=99.59  E-value=2.7e-14  Score=115.21  Aligned_cols=114  Identities=18%  Similarity=0.182  Sum_probs=72.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...+|+++|++|||||||+++|++........+..+.........   ....+.||||||...          +..+...
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~----------~~~~~~~   80 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER----------YRAITSA   80 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHH
Confidence            457999999999999999999998742111112222211111111   134789999999431          2334445


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++..   ++++++|+|.+...+... ..++..+..   .+.|+++|+||+|+..
T Consensus        81 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~  131 (216)
T PLN03110         81 YYRG---AVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH  131 (216)
T ss_pred             HhCC---CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc
Confidence            5544   899999999875432222 244544443   3689999999999854

>cd04112 Rab26 Rab26 subfamily

Probab=99.59  E-value=4e-14  Score=111.97  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=68.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|||||||++++.+... ......+.+..+.  .....   ...+.||||||...          +......
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~   69 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER----------FRSVTHA   69 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH----------HHHhhHH
Confidence            3799999999999999999998742 1111112111121  11111   35688999999421          2223334


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|.+...+... ..++..+..   .++|+++|+||+|+..
T Consensus        70 ~~~~---ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~  120 (191)
T cd04112          70 YYRD---AHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG  120 (191)
T ss_pred             HccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence            4433   899999999875422211 234444433   3689999999999864

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.59  E-value=5.7e-15  Score=114.63  Aligned_cols=129  Identities=19%  Similarity=0.278  Sum_probs=70.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .+.|+++|++|+|||+|+..|........++..   .....+..   .+..+.++|+||+..-  ..       .+... 
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~~~~~~~~~~~~~~lvD~PGH~rl--r~-------~~~~~-   69 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNIAYNVNNSKGKKLRLVDIPGHPRL--RS-------KLLDE-   69 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEEECCGSSTCGTCECEEEETT-HCC--CH-------HHHHH-
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCceEEeecCCCCEEEEEECCCcHHH--HH-------HHHHh-
Confidence            368999999999999999999987322212221   11111111   2567999999998541  11       12222 


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHH----HHHHHH-----hcCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHE----LISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFY  234 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~----~~~~l~-----~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~  234 (237)
                      +.....+.+||||+|++. +...-.+    ++..+.     ...+|++++.||.|+........+...+++.+..
T Consensus        70 ~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~  143 (181)
T PF09439_consen   70 LKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDK  143 (181)
T ss_dssp             HHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHH
T ss_pred             hhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHH
Confidence            111233899999999873 1121122    222221     2468999999999998766666666666666543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PLN00023 GTP-binding protein; Provisional

Probab=99.59  E-value=2.5e-14  Score=120.12  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=76.1

Q ss_pred             CCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----------------cCCeEEEEeCCCCCC
Q 026538           87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----------------LGTKLCLVDLPGYGF  150 (237)
Q Consensus        87 ~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----------------~~~~~~liDTpG~~~  150 (237)
                      .+.....+|+++|..|||||||++++++........+..|.+.......                ....+.||||+|...
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            3445667999999999999999999998732222222333332221111                124489999999532


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---------------CCcEEEEEecCC
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---------------QTKYQVVLTKTD  214 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---------------~~piilv~NK~D  214 (237)
                                +..+...|+..   ++++++|+|.+..-+... ..|++.+...               ++|+++|+||+|
T Consensus        96 ----------frsL~~~yyr~---AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D  162 (334)
T PLN00023         96 ----------YKDCRSLFYSQ---INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD  162 (334)
T ss_pred             ----------hhhhhHHhccC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence                      33444555554   999999999875322222 3455555432               378999999999


Q ss_pred             CCCh
Q 026538          215 TVFP  218 (237)
Q Consensus       215 l~~~  218 (237)
                      +...
T Consensus       163 L~~~  166 (334)
T PLN00023        163 IAPK  166 (334)
T ss_pred             cccc
Confidence            9654

>cd04134 Rho3 Rho3 subfamily

Probab=99.59  E-value=1.2e-14  Score=114.88  Aligned_cols=114  Identities=18%  Similarity=0.126  Sum_probs=69.6

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCce--EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t--~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      +|+++|.+|||||||++++++........+..+..  ..+........+.+|||||...          +..+...++. 
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~l~~~~~~-   70 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEE----------FDRLRSLSYA-   70 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChh----------cccccccccc-
Confidence            79999999999999999999873211111111111  1111111235689999999632          1122222333 


Q ss_pred             cccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCChHH
Q 026538          172 RVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~~~  220 (237)
                        .+|++++|+|.+..-+...  ..++..+..  .+.|+++|+||+|+....+
T Consensus        71 --~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~  121 (189)
T cd04134          71 --DTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARN  121 (189)
T ss_pred             --CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChh
Confidence              3899999999775422222  235555543  2689999999999975443

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.59  E-value=1.4e-15  Score=125.24  Aligned_cols=195  Identities=17%  Similarity=0.147  Sum_probs=116.6

Q ss_pred             ccccccccCCChhhhHHHHHhhcCCCcceEEeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhh-ccCCC
Q 026538            9 KNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAK-VSSSF   87 (237)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   87 (237)
                      +.+.++++|.-.+..+|..+++..-+..+....++.  .++..+..++... ....++.+.-+++.++.+...+ .+..+
T Consensus        97 a~T~earlqvalAempy~~~rl~r~~~hl~r~~g~~--v~gsges~id~d~-~rllr~kea~lrKeL~~vrrkr~~r~gr  173 (410)
T KOG0410|consen   97 AVTAEARLQVALAEMPYVGGRLERELQHLRRQSGGQ--VKGSGESIIDRDI-RRLLRIKEAQLRKELQRVRRKRQRRVGR  173 (410)
T ss_pred             hhhHHHHHhhhhhcCccccchHHHHHHHHHhcCCCc--ccCccchHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            345566788888888888888777666655555332  2232222211111 0111222222333333333333 22344


Q ss_pred             CCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE----EEEcCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (237)
Q Consensus        88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~----~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~  163 (237)
                      .....|.|+++|++|||||||+++|++..  ....+.-..|.|..    ....|..+.+.||-||...        ....
T Consensus       174 ~~~s~pviavVGYTNaGKsTLikaLT~Aa--l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd--------LP~~  243 (410)
T KOG0410|consen  174 EGESSPVIAVVGYTNAGKSTLIKALTKAA--LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD--------LPIQ  243 (410)
T ss_pred             ccCCCceEEEEeecCccHHHHHHHHHhhh--cCccchhheeccchhhhccCCCCcEEEEeechhhhhh--------CcHH
Confidence            44677999999999999999999999652  22333334444443    3345788999999998542        2233


Q ss_pred             HHHHHH---hccccccEEEEEEeCCCCCChhH-HHHHHHHHhcCCc-------EEEEEecCCCC
Q 026538          164 LVKEYV---STRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTK-------YQVVLTKTDTV  216 (237)
Q Consensus       164 ~~~~~~---~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p-------iilv~NK~Dl~  216 (237)
                      ++.+|.   ....++|+++.|+|.+++..+.. ..++..+...++|       ++-|.||+|..
T Consensus       244 LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e  307 (410)
T KOG0410|consen  244 LVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE  307 (410)
T ss_pred             HHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence            333332   23334899999999998754443 5566777776664       67799999975

>cd04176 Rap2 Rap2 subgroup

Probab=99.59  E-value=1.9e-14  Score=110.56  Aligned_cols=109  Identities=12%  Similarity=0.064  Sum_probs=67.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|+|||||+++++.... .  ....++..+.   .....  ...+.+|||||...          +..+...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTF-I--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ----------FASMRDL   68 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC-C--CCCCCchhheEEEEEEECCEEEEEEEEECCCccc----------ccchHHH
Confidence            5899999999999999999997732 1  1112222111   11111  23578999999532          1222333


Q ss_pred             HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      |+..   +|++++|+|.++.-+-. ...++..+..    .++|+++|+||+|+..
T Consensus        69 ~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~  120 (163)
T cd04176          69 YIKN---GQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES  120 (163)
T ss_pred             HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence            3333   89999999987542211 1333333332    4689999999999864

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.59  E-value=1.2e-14  Score=115.68  Aligned_cols=108  Identities=15%  Similarity=0.121  Sum_probs=67.2

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +|+++|.+|||||||++++++...   ......++.+   ..+...+  ..+.+|||||...          +..+...+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~   67 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTF---EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS----------FPAMRKLS   67 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC---CccCCCchhhheeEEEEECCEEEEEEEEECCCchh----------hhHHHHHH
Confidence            589999999999999999998732   1222222211   1122223  4688999999643          12222233


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|.++..+... ..++..+.    ..++|+++|+||+|+..
T Consensus        68 ~~~---ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  118 (198)
T cd04147          68 IQN---SDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE  118 (198)
T ss_pred             hhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence            333   899999999875422222 22222222    24689999999999865

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04121 Rab40 Rab40 subfamily

Probab=99.59  E-value=1.6e-14  Score=114.14  Aligned_cols=114  Identities=19%  Similarity=0.191  Sum_probs=72.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...+|+++|..|||||||+.++..........+..+....   +.+......+.+|||||...          +..+...
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~----------~~~l~~~   74 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR----------FCTIFRS   74 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHHHH
Confidence            3479999999999999999999976321111122221111   11111235688999999532          3344445


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                      |+..   +|++++|+|.+...+... ..++..+..  .+.|+++|+||+|+..
T Consensus        75 ~~~~---ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~  124 (189)
T cd04121          75 YSRG---AQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF  124 (189)
T ss_pred             HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence            5543   999999999876433222 345555543  3689999999999853

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04123 Rab21 Rab21 subfamily

Probab=99.59  E-value=4.7e-14  Score=107.72  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=68.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|+|||||+|+|++.. ... ...+.++....   +..  ....+.+|||||...          +..+...
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~   68 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENK-FNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER----------YHALGPI   68 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC-CCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHH----------HHHhhHH
Confidence            379999999999999999999873 221 12222212211   111  134588999999421          2233333


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      ++..   +|++++|+|.++.-.... ..++..+..   .++|+++|+||+|+...
T Consensus        69 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~  120 (162)
T cd04123          69 YYRD---ADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ  120 (162)
T ss_pred             Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence            4433   899999999875422221 233333332   26899999999998743

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.59  E-value=2.4e-14  Score=106.56  Aligned_cols=113  Identities=22%  Similarity=0.212  Sum_probs=74.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCC-CCCcccchHHHHHHHHHHHHHHhc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG-YGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG-~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      .+|+++|++|||||||+++|.+.+  .    ....|+.+.+.     =.+||||| |.+.          ..+....+..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~--~----~~~KTq~i~~~-----~~~IDTPGEyiE~----------~~~y~aLi~t   60 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE--I----RYKKTQAIEYY-----DNTIDTPGEYIEN----------PRFYHALIVT   60 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC--C----CcCccceeEec-----ccEEECChhheeC----------HHHHHHHHHH
Confidence            489999999999999999999873  1    12245555544     13499999 3321          1233333344


Q ss_pred             cccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC-ChHHHHHHHHHHH
Q 026538          172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIE  229 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~-~~~~~~~~~~~l~  229 (237)
                      ..++|+|++|.|+..+...-...+..   ..+.|+|-|+||+|+. +..++.+..+.++
T Consensus        61 a~dad~V~ll~dat~~~~~~pP~fa~---~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~  116 (143)
T PF10662_consen   61 AQDADVVLLLQDATEPRSVFPPGFAS---MFNKPVIGVITKIDLPSDDANIERAKKWLK  116 (143)
T ss_pred             HhhCCEEEEEecCCCCCccCCchhhc---ccCCCEEEEEECccCccchhhHHHHHHHHH
Confidence            44599999999988654333333332   2368999999999998 4555555554444

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK10218 GTP-binding protein; Provisional

Probab=99.58  E-value=4.6e-14  Score=128.73  Aligned_cols=128  Identities=21%  Similarity=0.201  Sum_probs=87.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceee--------------ccCCCCceEEEE---EEEcCCeEEEEeCCCCCCccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR--------------TSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYA  153 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~--------------~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~  153 (237)
                      ...+|+++|+.++|||||+++|+...+...              .....|.|....   +.+.+..+++|||||+.+-  
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df--   81 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF--   81 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh--
Confidence            456999999999999999999996421110              011234554432   3334778999999997541  


Q ss_pred             chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                              ......++..   +|++++|+|+..+.......++..+...++|+++|+||+|+... .....++++.+.+
T Consensus        82 --------~~~v~~~l~~---aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a-~~~~vl~ei~~l~  148 (607)
T PRK10218         82 --------GGEVERVMSM---VDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGA-RPDWVVDQVFDLF  148 (607)
T ss_pred             --------HHHHHHHHHh---CCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCC-chhHHHHHHHHHH
Confidence                    1222233332   99999999999888888888888888889999999999998642 2233344444443

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=4.7e-14  Score=108.36  Aligned_cols=115  Identities=20%  Similarity=0.235  Sum_probs=80.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE-----E--EcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-----F--KLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~-----~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ..+|+++|..+|||||||++++-...    ......|..+.|     +  ....++.+|||+|.          +.|..+
T Consensus        22 ~~KlVflGdqsVGKTslItRf~yd~f----d~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ----------ERFrsl   87 (221)
T KOG0094|consen   22 KYKLVFLGDQSVGKTSLITRFMYDKF----DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSL   87 (221)
T ss_pred             EEEEEEEccCccchHHHHHHHHHhhh----cccccceeeeEEEEEEEEEcCcEEEEEEEecccH----------HHHhhh
Confidence            36999999999999999999987631    111122222221     1  12567899999993          457788


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCC-hhHHHHHHHHHhc----CCcEEEEEecCCCCChHHHHH
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS----QTKYQVVLTKTDTVFPIDVAR  223 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~-~~~~~~~~~l~~~----~~piilv~NK~Dl~~~~~~~~  223 (237)
                      +..|++.   +.++++|+|..+.-+ +....|++.+...    ++-+++|+||.||.++.++..
T Consensus        88 ipsY~Rd---s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~  148 (221)
T KOG0094|consen   88 IPSYIRD---SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSI  148 (221)
T ss_pred             hhhhccC---CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhH
Confidence            8999887   899999999765332 2335566665543    355788999999998876543

>cd00157 Rho Rho (Ras homology) family

Probab=99.58  E-value=1e-14  Score=112.63  Aligned_cols=112  Identities=17%  Similarity=0.047  Sum_probs=69.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-----EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ++|+++|.+|||||||+++|++...  .....+ +..+     .........+.+|||||....          ..+...
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~----------~~~~~~   67 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKF--PTEYVP-TVFDNYSATVTVDGKQVNLGLWDTAGQEEY----------DRLRPL   67 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCC-ceeeeeEEEEEECCEEEEEEEEeCCCcccc----------cccchh
Confidence            4899999999999999999998832  111111 1111     111112346899999997531          111111


Q ss_pred             HHhccccccEEEEEEeCCCCCC--hhHHHHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~--~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~  220 (237)
                      ++   ..+|++++|+|+....+  .....++..+...  +.|+++|+||+|+.....
T Consensus        68 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  121 (171)
T cd00157          68 SY---PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN  121 (171)
T ss_pred             hc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence            22   23899999999875322  2223345544433  599999999999976553

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04126 Rab20 Rab20 subfamily

Probab=99.58  E-value=4.3e-14  Score=114.11  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=68.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE-EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      .+|+++|.+|||||||+++++... ...  ..+....+.... .....+.+|||||...          +..+...|+..
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~-f~~--~~~Tig~~~~~~~~~~~~l~iwDt~G~e~----------~~~l~~~~~~~   67 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERR-FKD--TVSTVGGAFYLKQWGPYNISIWDTAGREQ----------FHGLGSMYCRG   67 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC-CCC--CCCccceEEEEEEeeEEEEEEEeCCCccc----------chhhHHHHhcc
Confidence            379999999999999999999873 221  122111122111 1245689999999643          12233344443


Q ss_pred             cccccEEEEEEeCCCCCChhH--HHHHHHHH--hcCCcEEEEEecCCCCC
Q 026538          172 RVSLKRVCLLIDTKWGVKPRD--HELISLME--RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~--~~~~piilv~NK~Dl~~  217 (237)
                         +|++++|+|.++..+...  ..+.....  ..+.|+++|+||+|+..
T Consensus        68 ---ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~  114 (220)
T cd04126          68 ---AAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE  114 (220)
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence               999999999876432222  22222222  23589999999999865

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.58  E-value=3.3e-14  Score=129.90  Aligned_cols=113  Identities=19%  Similarity=0.203  Sum_probs=76.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccce-------eecc------CCCCceEEEE---EEE---c--CCeEEEEeCCCCCC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGV-------VRTS------DKPGLTQTIN---FFK---L--GTKLCLVDLPGYGF  150 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~-------~~~~------~~~g~t~~~~---~~~---~--~~~~~liDTpG~~~  150 (237)
                      ..+|+++|+.++|||||+++|+...+.       ....      ...|.|....   +.+   .  ...+.||||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            459999999999999999999875211       0111      1235554432   211   1  25689999999753


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                                +......++..   +|++++|+|++.+.+......+..+...++|+++|+||+|+..
T Consensus        83 ----------F~~~v~~~l~~---aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~  136 (595)
T TIGR01393        83 ----------FSYEVSRSLAA---CEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPS  136 (595)
T ss_pred             ----------HHHHHHHHHHh---CCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCc
Confidence                      12223333333   9999999999988777665555555556899999999999864

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.58  E-value=3.5e-14  Score=115.73  Aligned_cols=85  Identities=24%  Similarity=0.235  Sum_probs=58.4

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      +|+++|.+|+|||||+|+|++..  ..+...+++|.+...   ...+..+.+|||||+.+.....      ..+......
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~l~   73 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG------KGRGRQVIA   73 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccc------hhHHHHHHH
Confidence            68999999999999999999984  446667777765432   2347789999999975421111      011122222


Q ss_pred             ccccccEEEEEEeCCC
Q 026538          171 TRVSLKRVCLLIDTKW  186 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~  186 (237)
                      ....+|++++|+|+++
T Consensus        74 ~~~~ad~il~V~D~t~   89 (233)
T cd01896          74 VARTADLILMVLDATK   89 (233)
T ss_pred             hhccCCEEEEEecCCc
Confidence            3344999999999764

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.58  E-value=3.9e-14  Score=130.91  Aligned_cols=126  Identities=17%  Similarity=0.189  Sum_probs=82.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeec----------cCCC----------------------CceEEEEE---EE
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT----------SDKP----------------------GLTQTINF---FK  135 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~----------~~~~----------------------g~t~~~~~---~~  135 (237)
                      ..++|+++|++|+|||||+|+|+...+ .+.          +...                      |.|.+..+   ..
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSK-MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            446899999999999999999997532 111          1122                      33444322   22


Q ss_pred             cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcC-CcEEEEEecCC
Q 026538          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTD  214 (237)
Q Consensus       136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~piilv~NK~D  214 (237)
                      .+..+.++||||+.+             +..........+|++++|+|+..++..++.+.+..+...+ .|+++|+||+|
T Consensus       102 ~~~~~~liDtPG~~~-------------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D  168 (632)
T PRK05506        102 PKRKFIVADTPGHEQ-------------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMD  168 (632)
T ss_pred             CCceEEEEECCChHH-------------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecc
Confidence            356799999999632             1222222334499999999999888777776666666665 46888999999


Q ss_pred             CCC--hHHHHHHHHHHHH
Q 026538          215 TVF--PIDVARRAMQIEE  230 (237)
Q Consensus       215 l~~--~~~~~~~~~~l~~  230 (237)
                      +.+  .+......+++.+
T Consensus       169 ~~~~~~~~~~~i~~~i~~  186 (632)
T PRK05506        169 LVDYDQEVFDEIVADYRA  186 (632)
T ss_pred             cccchhHHHHHHHHHHHH
Confidence            974  3323344444443

>cd04114 Rab30 Rab30 subfamily

Probab=99.58  E-value=3.1e-14  Score=109.87  Aligned_cols=113  Identities=19%  Similarity=0.202  Sum_probs=70.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .++|+++|.+|||||||++++.+..  ......+..+.+.   .+...+  ..+.+|||||...          +.....
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~   74 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER----------FRSITQ   74 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHH
Confidence            4799999999999999999998662  1111122222222   112223  4578999999532          222333


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCChH
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~~~  219 (237)
                      .++..   +|++++|+|.+...+... ..++..+.   ..+.|+++|+||+|+....
T Consensus        75 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~  128 (169)
T cd04114          75 SYYRS---ANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR  128 (169)
T ss_pred             HHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence            44443   899999999875422211 23333333   3468999999999987543

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.58  E-value=4.9e-14  Score=124.68  Aligned_cols=129  Identities=21%  Similarity=0.329  Sum_probs=82.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceee-----------------------------ccCCCCceEEEEEEE---cCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-----------------------------TSDKPGLTQTINFFK---LGT  138 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-----------------------------~~~~~g~t~~~~~~~---~~~  138 (237)
                      ...+|+++|+.++|||||+++|+...+...                             .....|+|.+.....   .+.
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~   85 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY   85 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence            456999999999999999999985321000                             011346777764433   367


Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC---CChhHHHHHHHHHhcC-CcEEEEEecCC
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---VKPRDHELISLMERSQ-TKYQVVLTKTD  214 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~---~~~~~~~~~~~l~~~~-~piilv~NK~D  214 (237)
                      .+.+|||||+.+             +...+......+|++++|+|++.+   ......+.+..+...+ .|+++|+||+|
T Consensus        86 ~i~iiDtpGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~D  152 (426)
T TIGR00483        86 EVTIVDCPGHRD-------------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMD  152 (426)
T ss_pred             EEEEEECCCHHH-------------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChh
Confidence            899999999631             223333333459999999999876   4344444444444444 46899999999


Q ss_pred             CCC--hHHHHHHHHHHHHHH
Q 026538          215 TVF--PIDVARRAMQIEEVI  232 (237)
Q Consensus       215 l~~--~~~~~~~~~~l~~~l  232 (237)
                      +..  .+......+++++.+
T Consensus       153 l~~~~~~~~~~~~~ei~~~~  172 (426)
T TIGR00483       153 SVNYDEEEFEAIKKEVSNLI  172 (426)
T ss_pred             ccCccHHHHHHHHHHHHHHH
Confidence            974  333334444444433

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04125 RabA_like RabA-like subfamily

Probab=99.58  E-value=2.2e-14  Score=113.01  Aligned_cols=112  Identities=22%  Similarity=0.184  Sum_probs=69.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|.+|||||||++++++........+..+.+........   ...+.+|||||...          +......++
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~~~~~   70 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER----------FRSLNNSYY   70 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHhhHHHHc
Confidence            47999999999999999999987321112222222222221221   34578999999532          122333333


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ..   +|++++|+|.++.-+... ..++..+..   ...|+++|+||+|+..
T Consensus        71 ~~---~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~  119 (188)
T cd04125          71 RG---AHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN  119 (188)
T ss_pred             cC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence            33   999999999875422111 234444433   2579999999999874

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01892 Miro2 Miro2 subfamily

Probab=99.58  E-value=2.9e-14  Score=110.60  Aligned_cols=113  Identities=17%  Similarity=0.065  Sum_probs=69.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE---EEE-EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TIN-FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~---~~~-~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      +.++|+++|.+|||||||++++++... . .....+|+.   ... +...+  ..+.+|||+|....          ..+
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f-~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~   70 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSF-S-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA----------ILL   70 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCC-C-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccc----------ccc
Confidence            457999999999999999999998732 1 122222221   111 11123  45789999995431          112


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH-hcCCcEEEEEecCCCCCh
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-~~~~piilv~NK~Dl~~~  218 (237)
                      ...|+.   .+|++++|+|+++..+... ..+++.+. ..++|+++|+||+|+.+.
T Consensus        71 ~~~~~~---~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~  123 (169)
T cd01892          71 NDAELA---ACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQ  123 (169)
T ss_pred             chhhhh---cCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccc
Confidence            222332   2999999999875422111 13333332 236899999999998643

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.58  E-value=5.1e-14  Score=126.84  Aligned_cols=129  Identities=22%  Similarity=0.258  Sum_probs=86.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccce-e---ec----------cC------CCCceEE---EEEEEcCCeEEEEeCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-V---RT----------SD------KPGLTQT---INFFKLGTKLCLVDLPG  147 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~-~---~~----------~~------~~g~t~~---~~~~~~~~~~~liDTpG  147 (237)
                      ...+|+++|++|+|||||+++|+...+. .   .+          ++      ..|.+..   ..+.+.+..+++|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            3469999999999999999999742110 0   00          11      0112211   23444578899999999


Q ss_pred             CCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHH
Q 026538          148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ  227 (237)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~  227 (237)
                      +.+          +......++.   .+|++++|+|+..++......+++.+...++|+++++||+|+.... ..+.++.
T Consensus        89 ~~d----------f~~~~~~~l~---~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~-~~~~l~~  154 (526)
T PRK00741         89 HED----------FSEDTYRTLT---AVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGRE-PLELLDE  154 (526)
T ss_pred             chh----------hHHHHHHHHH---HCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccC-HHHHHHH
Confidence            743          1111122222   2999999999998887777788888888899999999999986433 3355566


Q ss_pred             HHHHHH
Q 026538          228 IEEVIF  233 (237)
Q Consensus       228 l~~~l~  233 (237)
                      +++.++
T Consensus       155 i~~~l~  160 (526)
T PRK00741        155 IEEVLG  160 (526)
T ss_pred             HHHHhC
Confidence            666554

>cd04133 Rop_like Rop subfamily

Probab=99.57  E-value=3.2e-14  Score=111.12  Aligned_cols=112  Identities=15%  Similarity=0.000  Sum_probs=72.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE--EEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~--~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+|+++|.+|+|||||+.++..........+..+.+.  .+........+.+|||+|...          +..+...|+.
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~----------~~~~~~~~~~   71 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED----------YNRLRPLSYR   71 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcc----------ccccchhhcC
Confidence            5899999999999999999997732111112111111  111111236689999999643          2223334444


Q ss_pred             ccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                      .   ++++++|+|.++.-+...  ..|+..+..  .+.|+++|+||+|+.+
T Consensus        72 ~---a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~  119 (176)
T cd04133          72 G---ADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD  119 (176)
T ss_pred             C---CcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence            3   899999999876544433  245665543  3689999999999954

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.57  E-value=3.9e-14  Score=110.43  Aligned_cols=112  Identities=14%  Similarity=-0.015  Sum_probs=68.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCc--eEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~--t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+|+++|.+|||||||+.+++.........+..+.  ...+........+.+|||||...          +..+...++.
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~   71 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRLRPLSYP   71 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchh----------hhhhhhhhcC
Confidence            48999999999999999999876321111111111  11111111135688999999532          1222333443


Q ss_pred             ccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                         .+|++++|+|.++.-+...  ..++..+..  .+.|+++|+||+|+.+
T Consensus        72 ---~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~  119 (174)
T cd01871          72 ---QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD  119 (174)
T ss_pred             ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence               3899999999876433222  234444433  2689999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04177 RSR1 RSR1 subgroup

Probab=99.57  E-value=1.5e-14  Score=111.80  Aligned_cols=113  Identities=14%  Similarity=0.105  Sum_probs=68.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce--EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t--~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ++|+++|.+|||||||++++.+........+..+..  ..+........+.+|||||...          +..+.+.++.
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~   71 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ----------FTAMRELYIK   71 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCccc----------chhhhHHHHh
Confidence            489999999999999999999773211111111111  1111111235688999999643          2233344444


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~  218 (237)
                      .   ++++++|+|.+..-+-.. ..+...+.    ..+.|+++|+||+|+...
T Consensus        72 ~---~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~  121 (168)
T cd04177          72 S---GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD  121 (168)
T ss_pred             h---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence            3   899999999775321111 22333332    236899999999998643

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.57  E-value=1.6e-14  Score=112.14  Aligned_cols=108  Identities=16%  Similarity=0.064  Sum_probs=66.7

Q ss_pred             EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      |+++|.+|||||||++++++...  .....+......  .....  ...+.+|||||....          ..+...++.
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~   68 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAF--PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY----------DRLRPLSYP   68 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCC--CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc----------chhchhhcC
Confidence            58999999999999999998731  111112111111  11111  245889999996431          112222232


Q ss_pred             ccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                         .+|++++|+|.++.-+...  ..++..+..  .+.|+++|+||+|+..
T Consensus        69 ---~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  116 (174)
T smart00174       69 ---DTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE  116 (174)
T ss_pred             ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence               3899999999875422222  234555543  3799999999999865

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.57  E-value=4.4e-14  Score=124.08  Aligned_cols=127  Identities=22%  Similarity=0.313  Sum_probs=81.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceee--ccCCCCceEEEEEEE-----------------------------cCCeE
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR--TSDKPGLTQTINFFK-----------------------------LGTKL  140 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~--~~~~~g~t~~~~~~~-----------------------------~~~~~  140 (237)
                      ..+|+++|..++|||||+++|.+.. ...  .....|.|.++.+..                             .+..+
T Consensus         4 ~~~i~iiG~~~~GKSTL~~~Lt~~~-~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         4 EVNIGMVGHVDHGKTTLTKALTGVW-TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             eEEEEEEccCCCCHHHHHHHHhCee-cccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            4689999999999999999997641 100  011123333322100                             13579


Q ss_pred             EEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-ChhHHHHHHHHHhcCC-cEEEEEecCCCCCh
Q 026538          141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFP  218 (237)
Q Consensus       141 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-piilv~NK~Dl~~~  218 (237)
                      .+|||||+.+             +...++.....+|++++|+|+..+. ..+..+.+..+...++ |+++|+||+|+.+.
T Consensus        83 ~liDtPGh~~-------------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~  149 (406)
T TIGR03680        83 SFVDAPGHET-------------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK  149 (406)
T ss_pred             EEEECCCHHH-------------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence            9999999632             2223333333489999999999876 5666666666666654 58999999999876


Q ss_pred             HHHHHHHHHHHHHH
Q 026538          219 IDVARRAMQIEEVI  232 (237)
Q Consensus       219 ~~~~~~~~~l~~~l  232 (237)
                      +......+++.+.+
T Consensus       150 ~~~~~~~~~i~~~l  163 (406)
T TIGR03680       150 EKALENYEEIKEFV  163 (406)
T ss_pred             HHHHHHHHHHHhhh
Confidence            55544444444433

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.57  E-value=1.8e-14  Score=118.46  Aligned_cols=132  Identities=17%  Similarity=0.178  Sum_probs=87.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE----EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~----~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...|.++|.||+|||||+|+|....  ..+.+++.||....+    +.....+.+-|.||+.......      +.+-..
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n------kGlG~~  267 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN------KGLGYK  267 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCcccccccccc------CcccHH
Confidence            4578899999999999999999984  578889999876533    2233449999999987643222      123345


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH----HHHHHHHHh-----cCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD----HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~----~~~~~~l~~-----~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      |++..+.|+.++||+|.+.......    ..+..++..     ...|.++|+||+|+.+.+  ...+..+.+.++
T Consensus       268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq  340 (366)
T KOG1489|consen  268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQ  340 (366)
T ss_pred             HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcC
Confidence            5566666999999999875421111    222223322     267999999999986322  233455555443

>TIGR00503 prfC peptide chain release factor 3

Probab=99.56  E-value=6e-14  Score=126.44  Aligned_cols=129  Identities=19%  Similarity=0.257  Sum_probs=84.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccccee-e---c----------cC------CCCceEE---EEEEEcCCeEEEEeCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-R---T----------SD------KPGLTQT---INFFKLGTKLCLVDLPG  147 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~-~---~----------~~------~~g~t~~---~~~~~~~~~~~liDTpG  147 (237)
                      ...+|+++|++++|||||+++|+...+.. .   +          ++      ..|.+..   ..+.+.+..+.+|||||
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            34699999999999999999986421110 0   1          00      1122222   23344578899999999


Q ss_pred             CCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHH
Q 026538          148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ  227 (237)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~  227 (237)
                      +.+      .    ......++   ..+|++++|+|+..++......+++.+...++|+++++||+|+... +..+.++.
T Consensus        90 ~~d------f----~~~~~~~l---~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~-~~~~ll~~  155 (527)
T TIGR00503        90 HED------F----SEDTYRTL---TAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIR-DPLELLDE  155 (527)
T ss_pred             hhh------H----HHHHHHHH---HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCC-CHHHHHHH
Confidence            742      1    11111122   2399999999999888777777888777788999999999998632 23345555


Q ss_pred             HHHHHH
Q 026538          228 IEEVIF  233 (237)
Q Consensus       228 l~~~l~  233 (237)
                      +++.++
T Consensus       156 i~~~l~  161 (527)
T TIGR00503       156 VENELK  161 (527)
T ss_pred             HHHHhC
Confidence            555544

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.56  E-value=7.9e-14  Score=122.45  Aligned_cols=111  Identities=17%  Similarity=0.224  Sum_probs=77.0

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeec-------------------------------cCCCCceEEEEEEE---cCCe
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRT-------------------------------SDKPGLTQTINFFK---LGTK  139 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~-------------------------------~~~~g~t~~~~~~~---~~~~  139 (237)
                      +|+++|+.++|||||+++|+...+....                               ....|.|.+..+..   .+..
T Consensus         2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~   81 (406)
T TIGR02034         2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK   81 (406)
T ss_pred             eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence            7999999999999999999754211100                               01233455553322   3667


Q ss_pred             EEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCC
Q 026538          140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVF  217 (237)
Q Consensus       140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~  217 (237)
                      +.++||||+.+             +..........+|++++|+|+..++..++.+.+..+...++| +++|+||+|+..
T Consensus        82 ~~liDtPGh~~-------------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~  147 (406)
T TIGR02034        82 FIVADTPGHEQ-------------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD  147 (406)
T ss_pred             EEEEeCCCHHH-------------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence            99999999632             222222233449999999999998888887777777666654 888999999975

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.56  E-value=6.4e-14  Score=113.23  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=69.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce--EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t--~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+|+++|.+|||||||++++.+........+..+..  ..+........+.||||+|...          +..+...++.
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~----------~~~l~~~~~~   71 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSY----------YDNVRPLAYP   71 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHH----------HHHHhHHhcc
Confidence            489999999999999999999873211111111111  1112211245688999999532          2233333443


Q ss_pred             ccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                      .   +|++++|+|.+..-+...  ..|...+..  .+.|+++|+||+|+..
T Consensus        72 ~---~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~  119 (222)
T cd04173          72 D---SDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT  119 (222)
T ss_pred             C---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence            3   999999999876422222  223333332  3689999999999864

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04117 Rab15 Rab15 subfamily

Probab=99.56  E-value=9.5e-14  Score=106.75  Aligned_cols=110  Identities=15%  Similarity=0.185  Sum_probs=68.5

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +|+++|++|+|||||++++++... . ....+....+.  .... .  ...+.+|||||...          +..+...+
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~~   69 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEF-H-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER----------YQTITKQY   69 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC-C-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh----------HHhhHHHH
Confidence            799999999999999999998732 1 11222222221  1111 1  24678999999532          22334444


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      +..   +|++++|+|.+..-+... ..++..+..   .+.|+++|+||+|+...
T Consensus        70 ~~~---~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~  120 (161)
T cd04117          70 YRR---AQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK  120 (161)
T ss_pred             hcC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence            443   899999999875322211 234443332   35899999999998643

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.56  E-value=9.9e-14  Score=123.83  Aligned_cols=114  Identities=19%  Similarity=0.237  Sum_probs=76.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeec-------------c------------------CCCCceEEEEEE---Ec
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-------------S------------------DKPGLTQTINFF---KL  136 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~-------------~------------------~~~g~t~~~~~~---~~  136 (237)
                      ..++|+++|+.++|||||+++|+...+....             +                  ...|.|.+..+.   ..
T Consensus        26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~  105 (474)
T PRK05124         26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE  105 (474)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence            4579999999999999999999865321100             0                  012345554322   23


Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcC-CcEEEEEecCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDT  215 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~piilv~NK~Dl  215 (237)
                      +..+.+|||||+.+             +..........+|++++|+|+..++...+.+.+..+...+ .|+++|+||+|+
T Consensus       106 ~~~i~~iDTPGh~~-------------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~  172 (474)
T PRK05124        106 KRKFIIADTPGHEQ-------------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDL  172 (474)
T ss_pred             CcEEEEEECCCcHH-------------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecc
Confidence            56899999999632             1112222234499999999999888776665555555555 468899999999


Q ss_pred             CC
Q 026538          216 VF  217 (237)
Q Consensus       216 ~~  217 (237)
                      ..
T Consensus       173 ~~  174 (474)
T PRK05124        173 VD  174 (474)
T ss_pred             cc
Confidence            74

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.56  E-value=4.4e-14  Score=110.36  Aligned_cols=109  Identities=17%  Similarity=0.132  Sum_probs=66.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCc-----eEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-----TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~-----t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|+|||||++++++...   .....++     +........+..+.+|||||..+          +..+...
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~   68 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHF---VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE----------YSILPQK   68 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC---ccccCcchhhhEEEEEEECCEEEEEEEEECCChHh----------hHHHHHH
Confidence            4899999999999999999997731   2212222     22222221235678999999642          1122222


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                      ++..   ++++++++|.+...+... ..++..+.    ..+.|+++|+||+|+..
T Consensus        69 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  120 (180)
T cd04137          69 YSIG---IHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT  120 (180)
T ss_pred             HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence            3322   899999999875322111 12222222    24679999999999864

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01875 RhoG RhoG subfamily

Probab=99.56  E-value=6.2e-14  Score=110.96  Aligned_cols=113  Identities=13%  Similarity=-0.030  Sum_probs=69.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE--EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~--~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+|+++|..|||||||++++..........+..+....  +........+.+|||||...          +..+...|+.
T Consensus         4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~----------~~~l~~~~~~   73 (191)
T cd01875           4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE----------YDRLRTLSYP   73 (191)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchh----------hhhhhhhhcc
Confidence            58999999999999999999976321111111111111  11111135688999999532          2334444544


Q ss_pred             ccccccEEEEEEeCCCCCChhHH--HHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~piilv~NK~Dl~~~  218 (237)
                      .   +|++++|+|..+.-+....  .+...+..  .++|+++|+||+|+...
T Consensus        74 ~---a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~  122 (191)
T cd01875          74 Q---TNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND  122 (191)
T ss_pred             C---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC
Confidence            4   9999999998754322222  24443432  36899999999998643

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PTZ00416 elongation factor 2; Provisional

Probab=99.56  E-value=8.6e-14  Score=131.82  Aligned_cols=112  Identities=16%  Similarity=0.240  Sum_probs=81.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC---------------ceEEE---EEEEc----------CCeEEE
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---------------LTQTI---NFFKL----------GTKLCL  142 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g---------------~t~~~---~~~~~----------~~~~~l  142 (237)
                      ...+|+++|+.++|||||+++|+...+. ......|               .|.+.   .+.+.          +..+++
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGI-ISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCC-cccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            4569999999999999999999975321 1111222               22221   11111          456899


Q ss_pred             EeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       143 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +||||+.+             +..........+|++++|+|+..++...+..+++.+...++|+++++||+|+.
T Consensus        97 iDtPG~~~-------------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVD-------------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHh-------------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence            99999753             22223333444999999999999999999999999988899999999999986

>cd04111 Rab39 Rab39 subfamily

Probab=99.55  E-value=6.2e-14  Score=112.70  Aligned_cols=110  Identities=22%  Similarity=0.244  Sum_probs=68.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEE--c--CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK--L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~--~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ++|+++|.+|||||||+++|++.. ..... .+....+..  ...  .  ...+.+|||||...          +..+..
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~-~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~----------~~~~~~   70 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGR-FAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER----------FRSITR   70 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC-CCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcchh----------HHHHHH
Confidence            689999999999999999999873 22221 122212211  111  1  24688999999532          233444


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      .|+..   +|++++|+|.++.-+... ..++..+..    ...|+++|+||+|+..
T Consensus        71 ~~~~~---~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~  123 (211)
T cd04111          71 SYYRN---SVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES  123 (211)
T ss_pred             HHhcC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence            55544   899999999875422111 233443332    2467899999999865

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00876 Ras Ras family

Probab=99.55  E-value=7.3e-14  Score=106.44  Aligned_cols=108  Identities=13%  Similarity=0.078  Sum_probs=67.6

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +|+++|++|||||||++++++..   ......+++.+.   .+...  ...+.+||+||...          +..+...+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~   67 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGT---FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----------FSAMRDLY   67 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC---CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence            58999999999999999999873   223333333221   11112  35688999999542          22223333


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|.....+... ..+...+..    ...|+++|+||+|+..
T Consensus        68 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  118 (160)
T cd00876          68 IRQ---GDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN  118 (160)
T ss_pred             Hhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence            333   899999999875322111 222222221    3689999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.55  E-value=8e-14  Score=122.50  Aligned_cols=128  Identities=23%  Similarity=0.314  Sum_probs=84.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEE-----------------------------cCCeE
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK-----------------------------LGTKL  140 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~-----------------------------~~~~~  140 (237)
                      ...+|+++|+.++|||||+.+|.+.. +........|.|.++.+..                             ....+
T Consensus         8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   87 (411)
T PRK04000          8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV   87 (411)
T ss_pred             CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence            44699999999999999999997641 0001111244554432210                             02468


Q ss_pred             EEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-ChhHHHHHHHHHhcCC-cEEEEEecCCCCCh
Q 026538          141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFP  218 (237)
Q Consensus       141 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-piilv~NK~Dl~~~  218 (237)
                      .+|||||+.             .+...++.....+|++++|+|+..+. .......+..+...+. |+++|+||+|+.+.
T Consensus        88 ~liDtPG~~-------------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~  154 (411)
T PRK04000         88 SFVDAPGHE-------------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK  154 (411)
T ss_pred             EEEECCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc
Confidence            999999952             34445555555689999999999876 5666666666666655 68999999999876


Q ss_pred             HHHHHHHHHHHHH
Q 026538          219 IDVARRAMQIEEV  231 (237)
Q Consensus       219 ~~~~~~~~~l~~~  231 (237)
                      .+.....+.+.+.
T Consensus       155 ~~~~~~~~~i~~~  167 (411)
T PRK04000        155 ERALENYEQIKEF  167 (411)
T ss_pred             hhHHHHHHHHHHH
Confidence            5544444444443

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=9.4e-15  Score=111.99  Aligned_cols=115  Identities=17%  Similarity=0.131  Sum_probs=79.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCC---CCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK---PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~---~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..+|+++|.+|||||||+-++..........+.   ...|+.+.......++.||||+|...          +..+...|
T Consensus         5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQER----------y~slapMY   74 (200)
T KOG0092|consen    5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQER----------YHSLAPMY   74 (200)
T ss_pred             eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccc----------ccccccce
Confidence            469999999999999999998876322211222   22444444444457788999999642          55677778


Q ss_pred             HhccccccEEEEEEeCCCCCCh-hHHHHHHHHHhcC---CcEEEEEecCCCCChH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERSQ---TKYQVVLTKTDTVFPI  219 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~~~---~piilv~NK~Dl~~~~  219 (237)
                      ++.   ++++++|+|..+.-+. .-..|++.+.+..   +-+.+|+||+|+....
T Consensus        75 yRg---A~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R  126 (200)
T KOG0092|consen   75 YRG---ANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR  126 (200)
T ss_pred             ecC---CcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc
Confidence            877   9999999998753222 2246677776543   3366799999998643

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.55  E-value=3.9e-13  Score=121.08  Aligned_cols=126  Identities=20%  Similarity=0.199  Sum_probs=82.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCC-CCceEEEEEE--EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~-~g~t~~~~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      -..+|+++|.+|+||||++|+|++.. ...++.. ++||+.....  ..+..+.+|||||+.++.........+...+..
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGek-vf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~  195 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEV-KFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK  195 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccc-cccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence            34689999999999999999999984 3444444 5566543332  347889999999998753332222222333334


Q ss_pred             HHhccccccEEEEEEeCCC-CCChhHHHHHHHHHh-----cCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMER-----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~  218 (237)
                      ++... .+|+|+||+.... .....+..+++.+..     ....+|||+|++|..++
T Consensus       196 ~Lsk~-gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       196 FIKKN-PPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHhcC-CCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            44432 3788888876432 222345556666643     24679999999999864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.55  E-value=1e-13  Score=126.75  Aligned_cols=114  Identities=19%  Similarity=0.224  Sum_probs=77.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccccee-------ecc------CCCCceEEE---EEEEc-----CCeEEEEeCCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTS------DKPGLTQTI---NFFKL-----GTKLCLVDLPGYG  149 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~-------~~~------~~~g~t~~~---~~~~~-----~~~~~liDTpG~~  149 (237)
                      ...+++++|+.++|||||+.+|+...+..       ...      ...|.|...   .+.+.     +..++||||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            45699999999999999999998642110       010      123444332   12111     4678999999975


Q ss_pred             CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      +          +......++..   +|++++|+|++.+.+..+...+..+...++|+++|+||+|+..
T Consensus        86 d----------F~~~v~~sl~~---aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~  140 (600)
T PRK05433         86 D----------FSYEVSRSLAA---CEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPA  140 (600)
T ss_pred             H----------HHHHHHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc
Confidence            4          11222333333   8999999999988877776666666667899999999999864

>PRK13351 elongation factor G; Reviewed

Probab=99.55  E-value=9.1e-14  Score=129.72  Aligned_cols=131  Identities=19%  Similarity=0.242  Sum_probs=90.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccccee-e---------ccC------CCCceEEE---EEEEcCCeEEEEeCCCCCC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-R---------TSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~-~---------~~~------~~g~t~~~---~~~~~~~~~~liDTpG~~~  150 (237)
                      ....+|+++|..|+|||||+++|+...+.. .         ..+      ..+.|...   .+.+.+..+.+|||||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            355799999999999999999998542110 0         010      12333322   3334577899999999753


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                                +......++..   +|++++|+|+..+........+..+...++|+++|+||+|+... +....++.+++
T Consensus        86 ----------f~~~~~~~l~~---aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~~  151 (687)
T PRK13351         86 ----------FTGEVERSLRV---LDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA-DLFKVLEDIEE  151 (687)
T ss_pred             ----------HHHHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC-CHHHHHHHHHH
Confidence                      11122223332   89999999999888777777888888889999999999998754 45666677776


Q ss_pred             HHHh
Q 026538          231 VIFY  234 (237)
Q Consensus       231 ~l~~  234 (237)
                      .++.
T Consensus       152 ~l~~  155 (687)
T PRK13351        152 RFGK  155 (687)
T ss_pred             HHCC
Confidence            6553

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=7.6e-14  Score=108.73  Aligned_cols=114  Identities=18%  Similarity=0.140  Sum_probs=79.8

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE-------EEcCCeEEEEeCCCCCCcccchHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAKEEVKDAWE  162 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~-------~~~~~~~~liDTpG~~~~~~~~~~~~~~~  162 (237)
                      +..++|+++|.+|||||+++-++....   .... ...|..+.+       ......+.+|||+|..          .+.
T Consensus        10 d~~~kvlliGDs~vGKt~~l~rf~d~~---f~~~-~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQe----------rf~   75 (207)
T KOG0078|consen   10 DYLFKLLLIGDSGVGKTCLLLRFSDDS---FNTS-FISTIGIDFKIKTIELDGKKIKLQIWDTAGQE----------RFR   75 (207)
T ss_pred             ceEEEEEEECCCCCchhHhhhhhhhcc---CcCC-ccceEEEEEEEEEEEeCCeEEEEEEEEcccch----------hHH
Confidence            456899999999999999999998773   1111 112332222       1124568999999943          356


Q ss_pred             HHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---CCcEEEEEecCCCCChHH
Q 026538          163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~piilv~NK~Dl~~~~~  220 (237)
                      .+...|++.   |+++++|+|.....+... ..|++.+..+   ++|.++|+||+|+....+
T Consensus        76 ti~~sYyrg---A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~  134 (207)
T KOG0078|consen   76 TITTAYYRG---AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQ  134 (207)
T ss_pred             HHHHHHHhh---cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccccc
Confidence            778888877   999999999765433222 3466666543   789999999999976443

>cd04128 Spg1 Spg1p

Probab=99.54  E-value=9.8e-14  Score=109.00  Aligned_cols=110  Identities=14%  Similarity=0.097  Sum_probs=66.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|.+|||||||++++++........+..|......... .  ...+.+|||+|...          +..+...++
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~----------~~~~~~~~~   70 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE----------FINMLPLVC   70 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchh----------HHHhhHHHC
Confidence            3799999999999999999988732111122222111111111 1  25689999999532          223333444


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTV  216 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~  216 (237)
                      ..   +|++++|+|.++..+... ..++..+..   ...| ++|+||+|+.
T Consensus        71 ~~---a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~  117 (182)
T cd04128          71 ND---AVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF  117 (182)
T ss_pred             cC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence            33   999999999876433222 234444443   2355 6889999986

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04135 Tc10 TC10 subfamily

Probab=99.54  E-value=4.3e-14  Score=109.69  Aligned_cols=110  Identities=14%  Similarity=0.027  Sum_probs=67.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|++|+|||||++++.+...   .....++..+.   .+..  ....+.+|||||....          ..+...
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~   67 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAF---PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------DRLRPL   67 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc----------cccccc
Confidence            3799999999999999999998732   12222222211   1111  1344789999996431          111111


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~  218 (237)
                      ++   ..+|++++|+|..+.-+...  ..++..+..  .+.|+++|+||+|+.+.
T Consensus        68 ~~---~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~  119 (174)
T cd04135          68 SY---PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD  119 (174)
T ss_pred             cC---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence            22   23899999999875422222  234444433  47899999999998643

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.54  E-value=6.1e-14  Score=108.95  Aligned_cols=113  Identities=12%  Similarity=0.034  Sum_probs=67.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce--EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t--~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+|+++|++|||||||++++.+........+..+..  ..+.+......+.+|||||...          +..+...++ 
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~-   70 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED----------YDRLRPLSY-   70 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchh----------hhhcccccc-
Confidence            589999999999999999999873211111111111  1111111234688999999642          111111222 


Q ss_pred             ccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~  218 (237)
                        ..+|++++|+|....-+...  ..++..+..  .+.|+++|+||+|+.+.
T Consensus        71 --~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  120 (175)
T cd01870          71 --PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  120 (175)
T ss_pred             --CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccC
Confidence              33899999999764321111  224444433  37899999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.54  E-value=5.6e-14  Score=108.23  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=65.5

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCce-----EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t-----~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +|+++|.+|||||||+++++...   .....++++     ...........+.+|||||..... .        .....+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~--------~~~~~~   68 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKR---FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD-T--------EQLERS   68 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCc---cccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc-c--------chHHHH
Confidence            58999999999999999998762   122222222     111111112357899999975310 0        011122


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-----cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|.+...+... ..++..+..     .+.|+++|+||+|+..
T Consensus        69 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  120 (165)
T cd04146          69 IRW---ADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH  120 (165)
T ss_pred             HHh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence            222   899999999876422221 223333332     3689999999999853

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.54  E-value=4.5e-14  Score=122.21  Aligned_cols=147  Identities=20%  Similarity=0.217  Sum_probs=95.9

Q ss_pred             hhccCCCC--CCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC---CeEEEEeCCCCCCcccch
Q 026538           81 AKVSSSFP--APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKE  155 (237)
Q Consensus        81 ~~~~~~~~--~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~liDTpG~~~~~~~~  155 (237)
                      .+...++|  .+..++++++|.||+|||||+|.++...  ..+.+.+.||+.+...+..   ..+.++||||+-+.-..+
T Consensus       155 rqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEd  232 (620)
T KOG1490|consen  155 RQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEED  232 (620)
T ss_pred             HHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhh
Confidence            33445555  5788999999999999999999998874  6788899999887554433   458899999987642221


Q ss_pred             HHHHHHHHHHHHHHhccccccEEEEEEeCCC--CCChhH-HHHHHHHHh--cCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~--~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                      .  ...+...-..+..+  -.+|+|++|.+.  |.+... ..++..++.  .+.|+|+|+||+|...++++.+..+++.+
T Consensus       233 r--N~IEmqsITALAHL--raaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~  308 (620)
T KOG1490|consen  233 R--NIIEMQIITALAHL--RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQ  308 (620)
T ss_pred             h--hHHHHHHHHHHHHh--hhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHH
Confidence            1  11111111122222  245889999765  333222 345555554  37999999999999987776555544444


Q ss_pred             HHH
Q 026538          231 VIF  233 (237)
Q Consensus       231 ~l~  233 (237)
                      .+.
T Consensus       309 ~~~  311 (620)
T KOG1490|consen  309 TII  311 (620)
T ss_pred             HHH
Confidence            443

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.54  E-value=2.9e-14  Score=110.81  Aligned_cols=110  Identities=15%  Similarity=0.085  Sum_probs=69.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-----EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-----~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|+|||||++++.+..   ......+++.+.     ........+.+|||||...          +..+...
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~   67 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNG---YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE----------FDKLRPL   67 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChh----------hcccccc
Confidence            379999999999999999998763   222333333222     1111134678999999632          1112222


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~  218 (237)
                      ++.   .+|++++|+|..+.-+...  ..++..+..  .+.|+++|+||+|+...
T Consensus        68 ~~~---~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  119 (173)
T cd04130          68 CYP---DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD  119 (173)
T ss_pred             ccC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC
Confidence            222   3899999999876432222  345555543  36899999999998643

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.54  E-value=2.6e-14  Score=104.12  Aligned_cols=108  Identities=19%  Similarity=0.206  Sum_probs=62.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcccce--eeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~--~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +|+|+|.+|||||||+++|++....  .......+.+........   ...+.+||++|......      .+..+... 
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~~~-   73 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS------QHQFFLKK-   73 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC------TSHHHHHH-
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc------cccchhhc-
Confidence            6899999999999999999988422  012223333333222211   23488999999643111      11111222 


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHH---HHHHHh--cCCcEEEEEecCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HEL---ISLMER--SQTKYQVVLTKTD  214 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~---~~~l~~--~~~piilv~NK~D  214 (237)
                            +|++++|+|.++..+-.. ..+   +..+..  .++|+++|+||.|
T Consensus        74 ------~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   74 ------ADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             ------SCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             ------CcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence                  999999999875422221 122   333332  3599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04148 RGK RGK subfamily

Probab=99.54  E-value=6.1e-14  Score=113.53  Aligned_cols=112  Identities=14%  Similarity=0.050  Sum_probs=67.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccce-eeccCCCC---ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~-~~~~~~~g---~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ++|+++|.+|||||||++++++.... ....+..+   ....+.+......+.+|||||...     ..       ...+
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~-----~~-------~~~~   68 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM-----WT-------EDSC   68 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch-----HH-------HhHH
Confidence            37999999999999999999765321 11111111   111222222346689999999641     01       1111


Q ss_pred             HhccccccEEEEEEeCCCCCChh-HHHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~piilv~NK~Dl~~~  218 (237)
                      +..  .+|++++|+|+.+.-+.. ...++..+..    .++|+++|+||+|+...
T Consensus        69 ~~~--~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~  121 (221)
T cd04148          69 MQY--QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS  121 (221)
T ss_pred             hhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccc
Confidence            110  389999999987642222 1334444433    36899999999998654

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.53  E-value=9.6e-14  Score=114.08  Aligned_cols=109  Identities=13%  Similarity=0.128  Sum_probs=67.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|||||||++++++...   .....+++.+.  ..+..   ...+.||||+|...          +..+...
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f---~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~----------~~~~~~~   67 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRF---EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP----------FPAMRRL   67 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChh----------hhHHHHH
Confidence            3799999999999999999987632   11222222221  11121   25688999999642          1122222


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh------------cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------------~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|.+...+... ..+++.+..            .+.|+++|+||+|+..
T Consensus        68 ~~~~---ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~  127 (247)
T cd04143          68 SILT---GDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF  127 (247)
T ss_pred             Hhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence            3332   899999999875422211 233333321            3689999999999864

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PLN03108 Rab family protein; Provisional

Probab=99.53  E-value=1.9e-13  Score=109.77  Aligned_cols=113  Identities=16%  Similarity=0.152  Sum_probs=69.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..+|+++|++|+|||||+|+|++........+..+.+........   ...+.+|||||...          +..+...+
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~----------~~~~~~~~   75 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----------FRSITRSY   75 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHHHHH
Confidence            479999999999999999999987321111122222222111111   24588999999531          22233344


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|+....+... ..++..+..   ...|+++|+||+|+..
T Consensus        76 ~~~---ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~  125 (210)
T PLN03108         76 YRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (210)
T ss_pred             hcc---CCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence            433   899999999875422222 233333332   3689999999999864

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.53  E-value=2.4e-13  Score=128.96  Aligned_cols=113  Identities=15%  Similarity=0.215  Sum_probs=81.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC---------------ceEEE---EEEE----------------
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---------------LTQTI---NFFK----------------  135 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g---------------~t~~~---~~~~----------------  135 (237)
                      ...++|+++|+.++|||||+++|+...+. +.....|               .|...   .+.+                
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCC-cccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            35679999999999999999999865321 1111122               22221   1111                


Q ss_pred             cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCC
Q 026538          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT  215 (237)
Q Consensus       136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl  215 (237)
                      .+..++++||||+.+             +..........+|++++|+|+..++......+++.+...++|+++++||+|+
T Consensus        96 ~~~~inliDtPGh~d-------------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~  162 (843)
T PLN00116         96 NEYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR  162 (843)
T ss_pred             CceEEEEECCCCHHH-------------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcc
Confidence            145689999999743             2222333334499999999999999999999999998889999999999999


Q ss_pred             C
Q 026538          216 V  216 (237)
Q Consensus       216 ~  216 (237)
                      .
T Consensus       163 ~  163 (843)
T PLN00116        163 C  163 (843)
T ss_pred             c
Confidence            7

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.53  E-value=3.3e-13  Score=113.40  Aligned_cols=142  Identities=23%  Similarity=0.314  Sum_probs=97.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeec---cCCCC----ceEEEEEEE-------cCCeEEEEeCCCCCCcccch-
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT---SDKPG----LTQTINFFK-------LGTKLCLVDLPGYGFAYAKE-  155 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~---~~~~g----~t~~~~~~~-------~~~~~~liDTpG~~~~~~~~-  155 (237)
                      -.++|+++|.+|.|||||+|.|++.. ....   .+..+    .|..+....       ....++++|||||++..... 
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTS-LVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhh-ccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            45799999999999999999999872 1111   01111    222222221       13568999999999853322 


Q ss_pred             ---HHHHHHHHHHHHHHhc-----------cccccEEEEEEe-CCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHH
Q 026538          156 ---EVKDAWEELVKEYVST-----------RVSLKRVCLLID-TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       156 ---~~~~~~~~~~~~~~~~-----------~~~~d~v~~vvd-~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~  220 (237)
                         .+......-.+.|+..           ...+++++|++. ..+++.+.+.++++.+... +.+|-|+.|+|.++.++
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNlIPVI~KaD~lT~~E  179 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNLIPVIAKADTLTDDE  179 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCeeeeeeccccCCHHH
Confidence               2222222333344321           112678888887 4579999999999988874 89999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 026538          221 VARRAMQIEEVIFY  234 (237)
Q Consensus       221 ~~~~~~~l~~~l~~  234 (237)
                      +....+.+.+.+..
T Consensus       180 l~~~K~~I~~~i~~  193 (373)
T COG5019         180 LAEFKERIREDLEQ  193 (373)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988887764

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.53  E-value=2.3e-13  Score=120.66  Aligned_cols=130  Identities=17%  Similarity=0.213  Sum_probs=89.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccccee-----------------------------eccCCCCceEEEEEEE---cCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFK---LGT  138 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~-----------------------------~~~~~~g~t~~~~~~~---~~~  138 (237)
                      ...+|+++|+.++|||||+.+|+...+..                             ......|.|.++.+..   .+.
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~   85 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence            34689999999999999999987521100                             0011345666654333   366


Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-------ChhHHHHHHHHHhcCCc-EEEEE
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVL  210 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-------~~~~~~~~~~l~~~~~p-iilv~  210 (237)
                      .++|+||||+.+             ++.........+|++++|+|+..+.       ..+..+.+..+...++| +++++
T Consensus        86 ~i~lIDtPGh~~-------------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~v  152 (446)
T PTZ00141         86 YFTIIDAPGHRD-------------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCI  152 (446)
T ss_pred             EEEEEECCChHH-------------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEE
Confidence            799999999642             3333344444599999999998875       35667788888888887 67899


Q ss_pred             ecCCCC----ChHHHHHHHHHHHHHHH
Q 026538          211 TKTDTV----FPIDVARRAMQIEEVIF  233 (237)
Q Consensus       211 NK~Dl~----~~~~~~~~~~~l~~~l~  233 (237)
                      ||+|..    ++....+..+++.+.+.
T Consensus       153 NKmD~~~~~~~~~~~~~i~~~i~~~l~  179 (446)
T PTZ00141        153 NKMDDKTVNYSQERYDEIKKEVSAYLK  179 (446)
T ss_pred             EccccccchhhHHHHHHHHHHHHHHHH
Confidence            999953    23455666666666654

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.53  E-value=5.7e-14  Score=116.78  Aligned_cols=130  Identities=21%  Similarity=0.247  Sum_probs=89.7

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE----EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~----~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      -|.++|.||+|||||+++++...  ..+.++|.||.....    ...+..|++-|.||+.+..+..      ..+-..|+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G------~GLG~~FL  232 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG------VGLGLRFL  232 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccC------CCccHHHH
Confidence            56789999999999999999985  788999999976532    2346779999999987643322      12334555


Q ss_pred             hccccccEEEEEEeCCCCCC--h-hH-HHHHHHHHh-----cCCcEEEEEecCCCC-ChHHHHHHHHHHHHH
Q 026538          170 STRVSLKRVCLLIDTKWGVK--P-RD-HELISLMER-----SQTKYQVVLTKTDTV-FPIDVARRAMQIEEV  231 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~--~-~~-~~~~~~l~~-----~~~piilv~NK~Dl~-~~~~~~~~~~~l~~~  231 (237)
                      ++.+.+.++++|+|.+..-.  + .+ ..+...+..     .++|.++|+||+|+. +.++.+...+.+.+.
T Consensus       233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~  304 (369)
T COG0536         233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA  304 (369)
T ss_pred             HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh
Confidence            55566999999999764211  1 11 233344443     368999999999955 555555555555543

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.53  E-value=6.7e-14  Score=108.19  Aligned_cols=66  Identities=26%  Similarity=0.465  Sum_probs=45.0

Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHH-HhcCCcEEEEEecC
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTKT  213 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l-~~~~~piilv~NK~  213 (237)
                      .+.|+||||+.+......      .+...|+.   .+|+++||+++...+...+...+... ......+++|+||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~------~~~~~~~~---~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHT------EITEEYLP---KADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTS------HHHHHHHS---TTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhH------HHHHHhhc---cCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence            489999999976322221      44555553   39999999999987776665555544 44456699999995

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.53  E-value=2.7e-13  Score=107.60  Aligned_cols=141  Identities=21%  Similarity=0.280  Sum_probs=93.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeecc-------CCCCceEEEE-------EEEcCCeEEEEeCCCCCCcccchH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEE  156 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~-------~~~g~t~~~~-------~~~~~~~~~liDTpG~~~~~~~~~  156 (237)
                      -.++|++||.+|.|||||+|.|+..+ +...+       +.+-| ..+.       ......+++++|||||++....+.
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~-v~~~s~~~~~~~p~pkT-~eik~~thvieE~gVklkltviDTPGfGDqInN~n  122 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSH-VSDSSSSDNSAEPIPKT-TEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN  122 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHH-HhhccCCCcccCcccce-EEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence            34799999999999999999999763 22111       11212 2221       111245689999999998643332


Q ss_pred             H----HHHHHHHHHHHHhc-----------cccccEEEEEEeC-CCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHH
Q 026538          157 V----KDAWEELVKEYVST-----------RVSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       157 ~----~~~~~~~~~~~~~~-----------~~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~  220 (237)
                      .    .....+-...|++.           ...+++++|++.. .+.+.+.+.++++.+.+. +.++-|+.|+|-++-++
T Consensus       123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaDtlTleE  201 (336)
T KOG1547|consen  123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKADTLTLEE  201 (336)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEeecccccHHH
Confidence            1    11111112222221           1125778888875 467889999999988875 78999999999999888


Q ss_pred             HHHHHHHHHHHHHh
Q 026538          221 VARRAMQIEEVIFY  234 (237)
Q Consensus       221 ~~~~~~~l~~~l~~  234 (237)
                      .....+.+++.+..
T Consensus       202 r~~FkqrI~~el~~  215 (336)
T KOG1547|consen  202 RSAFKQRIRKELEK  215 (336)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888887654

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.52  E-value=2.7e-14  Score=111.53  Aligned_cols=114  Identities=19%  Similarity=0.288  Sum_probs=73.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ...+|+++|..||||||+++.|... ......+..|.... .+...+..+.+||.+|...      .+..|.    .|+.
T Consensus        13 ~~~~ililGl~~sGKTtll~~l~~~-~~~~~~pT~g~~~~-~i~~~~~~~~~~d~gG~~~------~~~~w~----~y~~   80 (175)
T PF00025_consen   13 KEIKILILGLDGSGKTTLLNRLKNG-EISETIPTIGFNIE-EIKYKGYSLTIWDLGGQES------FRPLWK----SYFQ   80 (175)
T ss_dssp             SEEEEEEEESTTSSHHHHHHHHHSS-SEEEEEEESSEEEE-EEEETTEEEEEEEESSSGG------GGGGGG----GGHT
T ss_pred             cEEEEEEECCCccchHHHHHHhhhc-cccccCcccccccc-eeeeCcEEEEEEecccccc------ccccce----eecc
Confidence            4469999999999999999999876 33333333332222 2223577899999999532      222333    3333


Q ss_pred             ccccccEEEEEEeCCCC--CChhHHHHHHHHH---hcCCcEEEEEecCCCCChH
Q 026538          171 TRVSLKRVCLLIDTKWG--VKPRDHELISLME---RSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~---~~~~piilv~NK~Dl~~~~  219 (237)
                      .   +++++||+|+++.  +.+....+.+.+.   ..++|+++++||+|+....
T Consensus        81 ~---~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~  131 (175)
T PF00025_consen   81 N---ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM  131 (175)
T ss_dssp             T---ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred             c---cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc
Confidence            3   8999999998853  1222222323333   2368999999999987543

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.51  E-value=2e-13  Score=101.99  Aligned_cols=111  Identities=18%  Similarity=0.250  Sum_probs=76.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      ..+|+++|..|+||||+++.|.+. ....+++..|..... ....+..+.+||.-|..      ..++.|..    |+..
T Consensus        16 E~riLiLGLdNsGKTti~~kl~~~-~~~~i~pt~gf~Ikt-l~~~~~~L~iwDvGGq~------~lr~~W~n----Yfes   83 (185)
T KOG0073|consen   16 EVRILILGLDNSGKTTIVKKLLGE-DTDTISPTLGFQIKT-LEYKGYTLNIWDVGGQK------TLRSYWKN----YFES   83 (185)
T ss_pred             eeEEEEEecCCCCchhHHHHhcCC-CccccCCccceeeEE-EEecceEEEEEEcCCcc------hhHHHHHH----hhhc
Confidence            479999999999999999999998 445555554433322 22347789999999943      24445554    4444


Q ss_pred             cccccEEEEEEeCCCCCChhH-H----HHHHHHHhcCCcEEEEEecCCCCC
Q 026538          172 RVSLKRVCLLIDTKWGVKPRD-H----ELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~-~----~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                         .|++++|+|+++...-++ .    +.+..-+..+.|++++.||.|+..
T Consensus        84 ---tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~  131 (185)
T KOG0073|consen   84 ---TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG  131 (185)
T ss_pred             ---cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence               899999999976432222 1    222222234789999999999973

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=5.1e-14  Score=109.43  Aligned_cols=114  Identities=22%  Similarity=0.200  Sum_probs=80.6

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccC-CCC---ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g---~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      +..++|+++|.+++|||-|+.++...+ ....+. ..|   .|+.+.+...-.+..||||+|..          .+..+.
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnE-F~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQE----------RyrAit   80 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNE-FSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQE----------RYRAIT   80 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccc-cCcccccceeEEEEeeceeecCcEEEEeeecccchh----------hhcccc
Confidence            356899999999999999999999874 222221 112   23333333334567899999943          345667


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHhc---CCcEEEEEecCCCCC
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVF  217 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~---~~piilv~NK~Dl~~  217 (237)
                      ..|++.   +.++++|+|.....+.. ...|+++++.+   ++++++|+||+||..
T Consensus        81 SaYYrg---AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~  133 (222)
T KOG0087|consen   81 SAYYRG---AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH  133 (222)
T ss_pred             chhhcc---cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence            778776   89999999987654433 35677777764   688999999999964

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=3.7e-13  Score=113.86  Aligned_cols=142  Identities=20%  Similarity=0.277  Sum_probs=97.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceee------ccCCCCceEEEEEE-----E--cCCeEEEEeCCCCCCcccch--
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR------TSDKPGLTQTINFF-----K--LGTKLCLVDLPGYGFAYAKE--  155 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~------~~~~~g~t~~~~~~-----~--~~~~~~liDTpG~~~~~~~~--  155 (237)
                      -.++++++|.+|.|||||+|+|+... +..      ....+..|..+...     .  ....++++||||+++.....  
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~-l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTD-LSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhh-ccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            45799999999999999999999872 111      11111122222211     1  13568899999999863322  


Q ss_pred             --HHHHHHHHHHHHHHhcc----------ccccEEEEEEeC-CCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHH
Q 026538          156 --EVKDAWEELVKEYVSTR----------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA  222 (237)
Q Consensus       156 --~~~~~~~~~~~~~~~~~----------~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~  222 (237)
                        .+.....+-...|+...          ..+++++|++.+ .+++.+.|.++++.+.. .+++|-|+.|+|.++++++.
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~~El~  177 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTKDELN  177 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCHHHHH
Confidence              22222333334444321          136788888875 56899999999888876 48999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 026538          223 RRAMQIEEVIFY  234 (237)
Q Consensus       223 ~~~~~l~~~l~~  234 (237)
                      .....+.+.+..
T Consensus       178 ~~K~~I~~~i~~  189 (366)
T KOG2655|consen  178 QFKKRIRQDIEE  189 (366)
T ss_pred             HHHHHHHHHHHH
Confidence            999888887764

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=5.4e-13  Score=116.67  Aligned_cols=113  Identities=25%  Similarity=0.378  Sum_probs=90.6

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----cCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ++.|.|-++|+-..|||||+.+|.+..  .......|.|+++-.+.    .|..++++||||+..          |..  
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~--VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaA----------F~a--  216 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSS--VAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAA----------FSA--  216 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCc--eehhhcCCccceeceEEEecCCCCEEEEecCCcHHH----------HHH--
Confidence            467899999999999999999999883  23345567888874433    478999999999742          222  


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                       .-.+.....|+|++|+-+.+++.++..+.++..+..++|+++++||||...
T Consensus       217 -MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~  267 (683)
T KOG1145|consen  217 -MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPG  267 (683)
T ss_pred             -HHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCC
Confidence             222334447999999999999999999999999999999999999999863

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=6.1e-13  Score=116.64  Aligned_cols=112  Identities=20%  Similarity=0.302  Sum_probs=88.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc------CCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~------~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      +.|.|.++|+-..|||||+..+-+.+  ......-|.|+++-.+..      ...++++||||+..             |
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~--Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeA-------------F   68 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTN--VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEA-------------F   68 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCc--cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHH-------------H
Confidence            45899999999999999999998873  333444568888743332      36799999999742             2


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      ...-.+...-+|++++|+|+.+++.++..+.++.++..++|+++++||+|+.+
T Consensus        69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~  121 (509)
T COG0532          69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPE  121 (509)
T ss_pred             HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCC
Confidence            22222333448999999999999999999999999999999999999999974

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.2e-12  Score=109.82  Aligned_cols=142  Identities=19%  Similarity=0.243  Sum_probs=99.4

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccce-eeccCCCCceEEEEEEEc--------------------------------
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFKL--------------------------------  136 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~-~~~~~~~g~t~~~~~~~~--------------------------------  136 (237)
                      ...|.|+++|+.+.||||+|+.|+..+.. ..+++.|.|.+-+...+.                                
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            46799999999999999999999987411 112222322222111110                                


Q ss_pred             ----------CCeEEEEeCCCCCCcccchHHHH--HHHHHHHHHHhccccccEEEEEEeCCC-CCChhHHHHHHHHHhcC
Q 026538          137 ----------GTKLCLVDLPGYGFAYAKEEVKD--AWEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQ  203 (237)
Q Consensus       137 ----------~~~~~liDTpG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~~  203 (237)
                                -..+++|||||+-+...+ .+.+  .+...+.+|...   +|.|++++|+.. .++++..+++..++...
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQ-risR~ydF~~v~~WFaeR---~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E  211 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQ-RISRGYDFTGVLEWFAER---VDRIILLFDAHKLDISDEFKRVIDALKGHE  211 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchh-cccccCChHHHHHHHHHh---ccEEEEEechhhccccHHHHHHHHHhhCCc
Confidence                      023999999998653211 1111  133444444444   999999999754 56777788999999888


Q ss_pred             CcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 026538          204 TKYQVVLTKTDTVFPIDVARRAMQIEEVIFYL  235 (237)
Q Consensus       204 ~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~~  235 (237)
                      -.+-+|+||+|.++.+++.++.-.+...++.+
T Consensus       212 dkiRVVLNKADqVdtqqLmRVyGALmWslgkv  243 (532)
T KOG1954|consen  212 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKV  243 (532)
T ss_pred             ceeEEEeccccccCHHHHHHHHHHHHHhhhhh
Confidence            89999999999999999999998888877754

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.48  E-value=3e-13  Score=107.73  Aligned_cols=106  Identities=13%  Similarity=0.086  Sum_probs=67.3

Q ss_pred             ecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcccc
Q 026538           98 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS  174 (237)
Q Consensus        98 vG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (237)
                      +|.+|||||||+++++.........+..|.+.....+.   ....+.+|||||...          +..+...|+..   
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~----------~~~l~~~~~~~---   67 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK----------FGGLRDGYYIQ---   67 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHHhcC---
Confidence            69999999999999997632111222222222111111   246789999999532          33444455554   


Q ss_pred             ccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCC
Q 026538          175 LKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTV  216 (237)
Q Consensus       175 ~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~  216 (237)
                      ++++++|+|.+...+... ..|+..+..  .++|+++|+||+|+.
T Consensus        68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~  112 (200)
T smart00176       68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK  112 (200)
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence            899999999886533322 245555544  368999999999985

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=2.8e-13  Score=103.35  Aligned_cols=115  Identities=17%  Similarity=0.154  Sum_probs=78.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccC-CCCc---eEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGL---TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g~---t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ..++++++|.+|||||.|+.+++... ...+.+ .-|.   .+.+.+.....++.+|||+|..          .+.+..+
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~kr-F~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe----------~frsv~~   73 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKR-FQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQE----------SFRSVTR   73 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccC-ccccccceeeeeeceeEEEEcCceEEEEEEecCCcH----------HHHHHHH
Confidence            45799999999999999999999984 232222 1221   1222333335779999999953          3567788


Q ss_pred             HHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHhc---CCcEEEEEecCCCCChH
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~---~~piilv~NK~Dl~~~~  219 (237)
                      .|++.   +.++++|+|....-+.. ...|+..++..   +.-+++++||+||....
T Consensus        74 syYr~---a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR  127 (216)
T KOG0098|consen   74 SYYRG---AAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR  127 (216)
T ss_pred             HHhcc---CcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence            88887   88899999976532221 23455555543   56688999999997443

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.48  E-value=6.3e-13  Score=117.72  Aligned_cols=129  Identities=20%  Similarity=0.268  Sum_probs=86.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceee--ccCCCCceEEEEEEE---------------------------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR--TSDKPGLTQTINFFK---------------------------------  135 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~--~~~~~g~t~~~~~~~---------------------------------  135 (237)
                      ...+|+++|+-..|||||+.+|++.. ...  ..-..|.|.+.-|..                                 
T Consensus        33 ~~~~ig~~GHVDhGKTtLv~aLtg~~-~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         33 ATINIGTIGHVAHGKSTVVKALSGVK-TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CcEEEEEEccCCCCHHHHHHHHhCCC-cccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            34689999999999999999999753 111  111123332221110                                 


Q ss_pred             ---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-CChhHHHHHHHHHhcCC-cEEEEE
Q 026538          136 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVL  210 (237)
Q Consensus       136 ---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~~-piilv~  210 (237)
                         ....+.++||||+.             .++.........+|.+++|+|+..+ ...+..+.+..+...++ |+++|+
T Consensus       112 ~~~~~~~i~~IDtPGH~-------------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl  178 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHD-------------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ  178 (460)
T ss_pred             cccccceEeeeeCCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence               12368999999963             2333334444458999999999875 56666666666666666 488999


Q ss_pred             ecCCCCChHHHHHHHHHHHHHHH
Q 026538          211 TKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       211 NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      ||+|+.+.+...+..+++++.+.
T Consensus       179 NKiDlv~~~~~~~~~~ei~~~l~  201 (460)
T PTZ00327        179 NKIDLVKEAQAQDQYEEIRNFVK  201 (460)
T ss_pred             ecccccCHHHHHHHHHHHHHHHH
Confidence            99999987777676777766554

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=9.8e-13  Score=96.86  Aligned_cols=113  Identities=20%  Similarity=0.246  Sum_probs=80.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE-------EEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~-------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      .++|+++|..|+|||.|+.+++..-    ..+..|.|..+.+       .....++.+|||+|.          +.+..+
T Consensus         7 lfkivlvgnagvgktclvrrftqgl----fppgqgatigvdfmiktvev~gekiklqiwdtagq----------erfrsi   72 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGL----FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ----------ERFRSI   72 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccC----CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch----------HHHHHH
Confidence            4799999999999999999998762    2333344433322       122467899999994          346677


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---CCcEEEEEecCCCCChHHH
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~piilv~NK~Dl~~~~~~  221 (237)
                      ...|+++   ++.+++|.|.+...+... .+|++.+...   ++--|+|+||+|+.+..++
T Consensus        73 tqsyyrs---ahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrev  130 (213)
T KOG0095|consen   73 TQSYYRS---AHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREV  130 (213)
T ss_pred             HHHHhhh---cceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhh
Confidence            8888887   999999999876433322 4666666543   4557899999999876554

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.47  E-value=1.4e-12  Score=105.07  Aligned_cols=113  Identities=19%  Similarity=0.142  Sum_probs=74.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCC-ceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|..|||||||+++|.+... .. ...+. .+........    ...+.+|||+|..+          +..+...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~----------~~~~~~~   73 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEF-PE-GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE----------YRSLRPE   73 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcC-cc-cCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHH----------HHHHHHH
Confidence            6999999999999999999998842 21 11111 1111111111    34589999999532          3345555


Q ss_pred             HHhccccccEEEEEEeCCC--CCChhHHHHHHHHHhc---CCcEEEEEecCCCCChHH
Q 026538          168 YVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS---QTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~--~~~~~~~~~~~~l~~~---~~piilv~NK~Dl~~~~~  220 (237)
                      |+..   ++++++++|...  ........+...+...   ..|+++|.||+|+.....
T Consensus        74 y~~~---~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~  128 (219)
T COG1100          74 YYRG---ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQS  128 (219)
T ss_pred             HhcC---CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchh
Confidence            5554   899999999764  3333345566555543   489999999999986654

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.46  E-value=1.8e-12  Score=99.02  Aligned_cols=122  Identities=18%  Similarity=0.194  Sum_probs=84.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceee---c-cC----CCCceEEEEEE----EcCCeEEEEeCCCCCCcccchHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR---T-SD----KPGLTQTINFF----KLGTKLCLVDLPGYGFAYAKEEVK  158 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~---~-~~----~~g~t~~~~~~----~~~~~~~liDTpG~~~~~~~~~~~  158 (237)
                      ...+|++.|+.++||||++.++.....+..   . +.    ...+|....+.    ..+..+.|+||||+..        
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R--------   80 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER--------   80 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH--------
Confidence            346999999999999999999998731111   0 11    11255544332    2347899999999642        


Q ss_pred             HHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcC-CcEEEEEecCCCCChHHHHHHH
Q 026538          159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRA  225 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~piilv~NK~Dl~~~~~~~~~~  225 (237)
                        +..++.-+.+.   +.++++++|++.+.......+++.+.... +|+++++||.|+.+....+.+.
T Consensus        81 --F~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~  143 (187)
T COG2229          81 --FKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIR  143 (187)
T ss_pred             --HHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHH
Confidence              23333333333   89999999999887777778888888777 9999999999998544333333

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.45  E-value=3.6e-13  Score=102.54  Aligned_cols=115  Identities=17%  Similarity=0.144  Sum_probs=76.2

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccccee---eccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~---~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ....+|+++|.+|+|||||+|.+.......   .+-.....|+++.+...-..+.+|||+|..          .+..+.-
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQE----------RFqsLg~   76 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQE----------RFQSLGV   76 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHH----------Hhhhccc
Confidence            456799999999999999999998763111   111222367777665445668899999942          3444544


Q ss_pred             HHHhccccccEEEEEEeCCC--CCChhHHHHHHHHHh------cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMER------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~--~~~~~~~~~~~~l~~------~~~piilv~NK~Dl~~  217 (237)
                      .+++.   +|.+++++|...  .+...+.+--+++..      ..-|+|+++||+|+..
T Consensus        77 aFYRg---aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~  132 (210)
T KOG0394|consen   77 AFYRG---ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG  132 (210)
T ss_pred             ceecC---CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence            55554   899999988764  333333322233332      2468999999999864

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.45  E-value=5.4e-13  Score=99.55  Aligned_cols=110  Identities=21%  Similarity=0.101  Sum_probs=66.7

Q ss_pred             EecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        97 lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      ++|++|+|||||+|++.+... . ......+..+.  ....   .+..+.+|||||....          ......+.  
T Consensus         1 iiG~~~~GKStl~~~l~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~~~--   66 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEF-V-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF----------RSLRRLYY--   66 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCc-C-CcccccchhheeeEEEEECCEEEEEEEEecCChHHH----------HhHHHHHh--
Confidence            579999999999999998732 1 11111111111  1111   2567999999996531          11112222  


Q ss_pred             cccccEEEEEEeCCCCCChhHHHH-----HHHHHhcCCcEEEEEecCCCCChHHH
Q 026538          172 RVSLKRVCLLIDTKWGVKPRDHEL-----ISLMERSQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~~~~-----~~~l~~~~~piilv~NK~Dl~~~~~~  221 (237)
                       ..+|++++|+|++.+........     .......++|+++|+||+|+......
T Consensus        67 -~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~  120 (157)
T cd00882          67 -RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV  120 (157)
T ss_pred             -cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch
Confidence             23899999999886533333221     22233457999999999999765443

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.44  E-value=2.6e-12  Score=103.45  Aligned_cols=115  Identities=13%  Similarity=0.035  Sum_probs=68.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ....+|+++|++|||||||+++++.........+..+.......+   .....+.+|||||...          +..+..
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~----------~~~~~~   76 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK----------FGGLRD   76 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchh----------hhhhhH
Confidence            345799999999999999998765542211222222222211111   1245789999999532          122233


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                      .++..   ++++++|+|.+...+... ..++..+..  .+.|+++|+||+|+..
T Consensus        77 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~  127 (215)
T PTZ00132         77 GYYIK---GQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD  127 (215)
T ss_pred             HHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence            34433   799999999875432222 233333322  3689999999999864

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.44  E-value=1.8e-12  Score=109.90  Aligned_cols=83  Identities=22%  Similarity=0.211  Sum_probs=59.1

Q ss_pred             EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE--E-------------------------cCCeEEEEeCCC
Q 026538           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-------------------------LGTKLCLVDLPG  147 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~--~-------------------------~~~~~~liDTpG  147 (237)
                      |+++|.+|||||||+|+|++..  ..+++.|++|.+....  .                         ...++.+|||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            5799999999999999999984  5778888888665321  0                         124689999999


Q ss_pred             CCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538          148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (237)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~  185 (237)
                      +......      ...+...++.....+|++++|+|++
T Consensus        79 lv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          79 LVPGAHE------GKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCCCccc------hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            8543211      1233344444445599999999986

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.44  E-value=8e-13  Score=101.44  Aligned_cols=105  Identities=15%  Similarity=0.120  Sum_probs=65.2

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCC-ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      +|+++|.+|||||||+++++.........+..+ ....+.+......+.+|||+|...               ..|+.  
T Consensus         2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~~~~--   64 (158)
T cd04103           2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD---------------AQFAS--   64 (158)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc---------------hhHHh--
Confidence            799999999999999999876622111111111 111122211124588999999642               01222  


Q ss_pred             ccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCC
Q 026538          173 VSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTV  216 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~  216 (237)
                       .+|++++|+|.++.-+... ..++..+..    .+.|+++|+||+|+.
T Consensus        65 -~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~  112 (158)
T cd04103          65 -WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS  112 (158)
T ss_pred             -cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence             2899999999876433333 344444443    357999999999984

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.44  E-value=1.2e-12  Score=122.55  Aligned_cols=113  Identities=17%  Similarity=0.203  Sum_probs=78.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccce--------eeccC------CCCceEEEE-------EEEcCCeEEEEeCCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------VRTSD------KPGLTQTIN-------FFKLGTKLCLVDLPGYG  149 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~--------~~~~~------~~g~t~~~~-------~~~~~~~~~liDTpG~~  149 (237)
                      ...+|+++|+.++|||||+++|+...+.        ....+      .+|.|.+..       +.+.+..+++|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            4579999999999999999999753110        00011      133343321       22236779999999986


Q ss_pred             CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +-          ......++.   .+|++++|+|+..++...+..+++.+...+.|+++|+||+|..
T Consensus        98 ~f----------~~~~~~al~---~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        98 DF----------GGDVTRAMR---AVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL  151 (720)
T ss_pred             cc----------HHHHHHHHH---hcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence            41          111122222   2999999999998888888888887777788999999999986

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.43  E-value=8.7e-13  Score=109.04  Aligned_cols=92  Identities=23%  Similarity=0.231  Sum_probs=68.3

Q ss_pred             CCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ++.+...|+++|+|++|||||+|.|++..  ..+.+.+.||...   .+.+.|..+.++|+||+.+..+...      ..
T Consensus        59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~------gr  130 (365)
T COG1163          59 KKSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR------GR  130 (365)
T ss_pred             eccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCC------CC
Confidence            34667899999999999999999999985  6788889888775   3455688999999999865432221      01


Q ss_pred             HHHHHhccccccEEEEEEeCCCC
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWG  187 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~  187 (237)
                      -++.+.....||+|++|+|+...
T Consensus       131 G~~vlsv~R~ADlIiiVld~~~~  153 (365)
T COG1163         131 GRQVLSVARNADLIIIVLDVFED  153 (365)
T ss_pred             cceeeeeeccCCEEEEEEecCCC
Confidence            12334444559999999997643

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.42  E-value=3.7e-12  Score=119.49  Aligned_cols=113  Identities=19%  Similarity=0.272  Sum_probs=77.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeec--------cC------CCCceEEE---EEEE----cCCeEEEEeCCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--------SD------KPGLTQTI---NFFK----LGTKLCLVDLPGYG  149 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~--------~~------~~g~t~~~---~~~~----~~~~~~liDTpG~~  149 (237)
                      ...+|+++|+.++|||||+.+|+...+....        .+      ..|.|.+.   .+.+    .+..++++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            4569999999999999999999864321110        00      11222221   1111    25668999999986


Q ss_pred             CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +-          ......   ....+|++++|+|+..++...+..+++.+...+.|.++++||+|+.
T Consensus        99 df----------~~~~~~---~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~  152 (731)
T PRK07560         99 DF----------GGDVTR---AMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL  152 (731)
T ss_pred             Ch----------HHHHHH---HHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence            41          111112   2223899999999999988888888888777788999999999986

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.41  E-value=4.8e-12  Score=112.24  Aligned_cols=130  Identities=18%  Similarity=0.239  Sum_probs=83.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccccee-----------------------------eccCCCCceEEEEEEE---cCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFK---LGT  138 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~-----------------------------~~~~~~g~t~~~~~~~---~~~  138 (237)
                      ...+|+++|+.++|||||+-+|+...+..                             ......|.|.++.+..   .+.
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~   85 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY   85 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence            34689999999999999999887421100                             0011234566654333   366


Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-CC------hhHHHHHHHHHhcCCc-EEEEE
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VK------PRDHELISLMERSQTK-YQVVL  210 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~------~~~~~~~~~l~~~~~p-iilv~  210 (237)
                      .++++||||+.             +++.........+|++++|+|+..+ +.      .+..+.+..+...++| +++++
T Consensus        86 ~i~liDtPGh~-------------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v  152 (447)
T PLN00043         86 YCTVIDAPGHR-------------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC  152 (447)
T ss_pred             EEEEEECCCHH-------------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence            79999999963             2333333333449999999999875 21      4556666667777885 68899


Q ss_pred             ecCCCCC----hHHHHHHHHHHHHHHH
Q 026538          211 TKTDTVF----PIDVARRAMQIEEVIF  233 (237)
Q Consensus       211 NK~Dl~~----~~~~~~~~~~l~~~l~  233 (237)
                      ||+|+.+    .....+..++++..++
T Consensus       153 NKmD~~~~~~~~~~~~~i~~ei~~~l~  179 (447)
T PLN00043        153 NKMDATTPKYSKARYDEIVKEVSSYLK  179 (447)
T ss_pred             EcccCCchhhhHHHHHHHHHHHHHHHH
Confidence            9999863    2233444555555444

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.41  E-value=3.9e-12  Score=109.15  Aligned_cols=125  Identities=17%  Similarity=0.249  Sum_probs=85.1

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccc---cee-----------eccCCCC---ceEEEEEEE-------c----CCeEE
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQW---GVV-----------RTSDKPG---LTQTINFFK-------L----GTKLC  141 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~---~~~-----------~~~~~~g---~t~~~~~~~-------~----~~~~~  141 (237)
                      .+.+.|+++|+.++|||||+|+|.+.-   ...           .+++.+|   +|.+..+..       .    ..++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            466799999999999999999999871   122           5677888   777765521       1    37899


Q ss_pred             EEeCCCCCCcccchHHH--H------HHH----------HH-HHHHHhccccccEEEEEE-eCC------CCCChhHHHH
Q 026538          142 LVDLPGYGFAYAKEEVK--D------AWE----------EL-VKEYVSTRVSLKRVCLLI-DTK------WGVKPRDHEL  195 (237)
Q Consensus       142 liDTpG~~~~~~~~~~~--~------~~~----------~~-~~~~~~~~~~~d~v~~vv-d~~------~~~~~~~~~~  195 (237)
                      ++||+|+.........+  .      .|.          ++ .+..+.  ..+++.++|. |.+      ......+..+
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~--dhstIgivVtTDgsi~dI~Re~y~~aEe~~  172 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ--EHSTIGVVVTTDGTITDIPREDYVEAEERV  172 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH--hcCcEEEEEEcCCCccccccccchHHHHHH
Confidence            99999986532111111  0      000          00 111111  1378888888 875      3455667889


Q ss_pred             HHHHHhcCCcEEEEEecCCCC
Q 026538          196 ISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       196 ~~~l~~~~~piilv~NK~Dl~  216 (237)
                      ++.++..++|+++|+||+|-.
T Consensus       173 i~eLk~~~kPfiivlN~~dp~  193 (492)
T TIGR02836       173 IEELKELNKPFIILLNSTHPY  193 (492)
T ss_pred             HHHHHhcCCCEEEEEECcCCC
Confidence            999999999999999999943

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.41  E-value=1.1e-12  Score=113.51  Aligned_cols=88  Identities=23%  Similarity=0.268  Sum_probs=65.0

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--------------------CCeEEEEeCCCCC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYG  149 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--------------------~~~~~liDTpG~~  149 (237)
                      ....+|+++|.||||||||+|+|++..  ..+++.|++|.+......                    +..+.++||||+.
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            455699999999999999999998874  678899999987644322                    2248999999987


Q ss_pred             CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~  185 (237)
                      ......      ..+...++.....+|++++|+|+.
T Consensus        97 ~ga~~g------~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASEG------EGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcch------hHHHHHHHHHHHHCCEEEEEEeCC
Confidence            532221      123344555555699999999974

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=1.5e-12  Score=111.25  Aligned_cols=129  Identities=19%  Similarity=0.243  Sum_probs=93.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhccccee--------------eccC------CCC---ceEEEEEEEcCCeEEEEeCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTSD------KPG---LTQTINFFKLGTKLCLVDLPGYG  149 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~--------------~~~~------~~g---~t~~~~~~~~~~~~~liDTpG~~  149 (237)
                      ...+|+-+|.+|||||-..|+---+..              ..|+      .+|   ++.-+++.+.+..++|+||||+.
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe   92 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE   92 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence            488999999999999997766210000              0010      111   23334566668899999999986


Q ss_pred             CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                      +             +....++++..+|..+.|+|+..++.++...+++.++-.++|++-.+||+|.... +-.+++++++
T Consensus        93 D-------------FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r-dP~ELLdEiE  158 (528)
T COG4108          93 D-------------FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGR-DPLELLDEIE  158 (528)
T ss_pred             c-------------cchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccC-ChHHHHHHHH
Confidence            5             2223333333489999999999999999999999999999999999999998643 3456778888


Q ss_pred             HHHHhh
Q 026538          230 EVIFYL  235 (237)
Q Consensus       230 ~~l~~~  235 (237)
                      +.|+--
T Consensus       159 ~~L~i~  164 (528)
T COG4108         159 EELGIQ  164 (528)
T ss_pred             HHhCcc
Confidence            777643

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.40  E-value=9.5e-13  Score=98.08  Aligned_cols=108  Identities=20%  Similarity=0.162  Sum_probs=73.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-------EEEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-------~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      .++|+++|.+|+|||||+-++....    ..+...+|..+.       +.....++.||||+|.          +.|..+
T Consensus        11 t~KiLlIGeSGVGKSSLllrFv~~~----fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq----------ErFRtL   76 (209)
T KOG0080|consen   11 TFKILLIGESGVGKSSLLLRFVSNT----FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ----------ERFRTL   76 (209)
T ss_pred             eEEEEEEccCCccHHHHHHHHHhcc----cCccCCceeeeeEEEEEEEEcCceEEEEEEeccch----------Hhhhcc
Confidence            4799999999999999999998772    222223333322       1222467899999994          335667


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc----CCcEEEEEecCCCC
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTV  216 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~----~~piilv~NK~Dl~  216 (237)
                      ...|++.   +.++++|+|....-+... ..|++.+...    ++-.++|+||+|.-
T Consensus        77 TpSyyRg---aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke  130 (209)
T KOG0080|consen   77 TPSYYRG---AQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE  130 (209)
T ss_pred             CHhHhcc---CceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence            7788877   899999999765322221 3455555432    45568899999975

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.40  E-value=1.4e-12  Score=103.48  Aligned_cols=110  Identities=13%  Similarity=-0.025  Sum_probs=65.9

Q ss_pred             CEEEEecCCCCchhhHHH-HHhcccce--eeccCCCCceE--E-E------------EEEEcCCeEEEEeCCCCCCcccc
Q 026538           93 PEIAFAGRSNVGKSSMLN-ALTRQWGV--VRTSDKPGLTQ--T-I------------NFFKLGTKLCLVDLPGYGFAYAK  154 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin-~L~~~~~~--~~~~~~~g~t~--~-~------------~~~~~~~~~~liDTpG~~~~~~~  154 (237)
                      .+|+++|.+|||||||++ .+.+....  ........|.-  + .            ........+.+|||||...    
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~----   78 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD----   78 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence            589999999999999996 55443100  00111111210  1 0            0111145689999999642    


Q ss_pred             hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHH--HHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                              .+...|+.   .+|++++|+|..+..+....  .|+..+..  .+.|+++|+||+|+..
T Consensus        79 --------~~~~~~~~---~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~  134 (195)
T cd01873          79 --------KDRRFAYG---RSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY  134 (195)
T ss_pred             --------hhhcccCC---CCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence                    01112333   39999999998765433332  35555543  3689999999999853

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.40  E-value=9.1e-13  Score=112.84  Aligned_cols=112  Identities=29%  Similarity=0.293  Sum_probs=67.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc----ceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~----~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .+|+|+|.+|+|||||||+|.|-.    +.+.++. ..||.....|..  -..+.+||.||++.+....      ..++.
T Consensus        36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~------~~Yl~  108 (376)
T PF05049_consen   36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPP------EEYLK  108 (376)
T ss_dssp             EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-SS-TTEEEEEE--GGGSS--H------HHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCH------HHHHH
Confidence            699999999999999999998731    2222222 235555554443  3579999999987542211      11121


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT  215 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl  215 (237)
                      ..  .....|.++++.+.  .+...+..+.+.+...++|+++|.||+|.
T Consensus       109 ~~--~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~  153 (376)
T PF05049_consen  109 EV--KFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDS  153 (376)
T ss_dssp             HT--TGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred             Hc--cccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence            11  12237876666543  57889999999999999999999999996

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd01858 NGP_1 NGP-1

Probab=99.40  E-value=8.3e-13  Score=101.22  Aligned_cols=56  Identities=34%  Similarity=0.596  Sum_probs=50.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~  148 (237)
                      ..+|+++|.||+|||||+|+|.+. ....+++.+|+|+...++..+..+.++||||+
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi  157 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKRIYLIDCPGV  157 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence            468899999999999999999998 55788999999999988877777999999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.40  E-value=5.5e-12  Score=102.08  Aligned_cols=132  Identities=17%  Similarity=0.133  Sum_probs=75.5

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      +|+++|+.++||||+.+.+++.. .+.-+..-+.|.++....    ....+.+||.||.......     .+..-....+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~-----~~~~~~~~if   74 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN-----YFNSQREEIF   74 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT-----THTCCHHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc-----cccccHHHHH
Confidence            68999999999999999999873 233334445565554333    2568999999997542111     0000011122


Q ss_pred             hccccccEEEEEEeCCCCCChhHH----HHHHHHHhc--CCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDH----ELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEEVIFY  234 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~----~~~~~l~~~--~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~  234 (237)
                      +.   +.+++||+|+...-...+.    ..++.+...  +..+.+.+.|+|++.++......+.+.+.+..
T Consensus        75 ~~---v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~  142 (232)
T PF04670_consen   75 SN---VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRD  142 (232)
T ss_dssp             CT---ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHH
T ss_pred             hc---cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHH
Confidence            22   8999999998732223332    222333332  67799999999999888777776666665543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04129 Rho2 Rho2 subfamily

Probab=99.39  E-value=3.1e-12  Score=100.81  Aligned_cols=110  Identities=16%  Similarity=0.064  Sum_probs=65.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE----EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .+|+++|++|+|||||++++.......  ...+.....    +.+......+.+|||||....          ......+
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----------~~~~~~~   69 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY----------ERLRPLS   69 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhc----------cccchhh
Confidence            389999999999999999998552211  111111111    111111245789999996431          1111112


Q ss_pred             HhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~  217 (237)
                      +   ..++++++++|....-+...  ..++..+...  ..|+++|+||+|+..
T Consensus        70 ~---~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~  119 (187)
T cd04129          70 Y---SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ  119 (187)
T ss_pred             c---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence            2   23899999998764322222  2355555432  689999999999853

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.39  E-value=2.5e-12  Score=98.50  Aligned_cols=111  Identities=17%  Similarity=0.155  Sum_probs=67.8

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-EEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      +|+++|.+|||||||++++.+........+..|..... .+..  ....+.+||++|...          +..+...++.
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~~~~   70 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQER----------FDSLRDIFYR   70 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGG----------GHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccc----------cccccccccc
Confidence            68999999999999999999873211111222211111 1211  245689999999542          1222233333


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      .   +|++++++|..+.-+-.. ..++..+..   ...|+++|+||+|+..
T Consensus        71 ~---~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~  118 (162)
T PF00071_consen   71 N---SDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD  118 (162)
T ss_dssp             T---ESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred             c---cccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            3   899999999865311111 244444433   2489999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.2e-11  Score=105.49  Aligned_cols=127  Identities=19%  Similarity=0.285  Sum_probs=85.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccc-----------------------ee------eccCCCCceEEEEE---EEcCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------VV------RTSDKPGLTQTINF---FKLGT  138 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~-----------------------~~------~~~~~~g~t~~~~~---~~~~~  138 (237)
                      ...+++++|+..+|||||+-+|+-..+                       ++      ......|.|.+...   .....
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~   85 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY   85 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence            446999999999999999988873210                       00      11123456666533   33356


Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-------CChhHHHHHHHHHhcCC-cEEEEE
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL  210 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~-piilv~  210 (237)
                      .++|+|+||+.             +++...+.....+|..++|+|++.+       ...+..+.+-...-.++ .+++++
T Consensus        86 ~~tIiDaPGHr-------------dFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVav  152 (428)
T COG5256          86 NFTIIDAPGHR-------------DFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAV  152 (428)
T ss_pred             eEEEeeCCchH-------------HHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEE
Confidence            79999999964             3455555555559999999999876       55556665555555555 488999


Q ss_pred             ecCCCCC--hHHHHHHHHHHHH
Q 026538          211 TKTDTVF--PIDVARRAMQIEE  230 (237)
Q Consensus       211 NK~Dl~~--~~~~~~~~~~l~~  230 (237)
                      ||+|+++  ++..++....+..
T Consensus       153 NKMD~v~wde~rf~ei~~~v~~  174 (428)
T COG5256         153 NKMDLVSWDEERFEEIVSEVSK  174 (428)
T ss_pred             EcccccccCHHHHHHHHHHHHH
Confidence            9999984  4444555555555

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.38  E-value=4e-13  Score=116.19  Aligned_cols=136  Identities=18%  Similarity=0.230  Sum_probs=87.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc----ceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~----~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .+++++|.+|||||||+|+|++..    ....++..||+|++......+..+.++||||+....   .+...+..-.-.+
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~---~~~~~l~~~~l~~  231 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSH---QMAHYLDKKDLKY  231 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChh---HhhhhcCHHHHhh
Confidence            589999999999999999999853    235788999999999887776678999999987531   1111111101112


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV  231 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~  231 (237)
                      +.-......+.+.+|..+.+.......+..+......+.+.++|.+.......++..+.+++.
T Consensus       232 ~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~  294 (360)
T TIGR03597       232 ITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKH  294 (360)
T ss_pred             cCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhh
Confidence            333344677888888765433333333333333345677888888876554444444444443

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=3e-12  Score=112.06  Aligned_cols=133  Identities=22%  Similarity=0.232  Sum_probs=92.1

Q ss_pred             CCCCCCCEEEEecCCCCchhhHHHHHhcccce-------------eeccCCCCceEEE---EEEEcC---CeEEEEeCCC
Q 026538           87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTI---NFFKLG---TKLCLVDLPG  147 (237)
Q Consensus        87 ~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~-------------~~~~~~~g~t~~~---~~~~~~---~~~~liDTpG  147 (237)
                      .|.++..++.|+-+...|||||..+|+...+.             ..+...+|.|...   .+++.+   +.+++|||||
T Consensus        55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG  134 (650)
T KOG0462|consen   55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG  134 (650)
T ss_pred             CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence            34466789999999999999999999865321             1122345666443   233333   7799999999


Q ss_pred             CCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHH
Q 026538          148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ  227 (237)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~  227 (237)
                      +.+-  ..++.+.           ...|+++++|+|++++++.+...-+-..-+.+..+|.|+||+|+... +.++...+
T Consensus       135 HvDF--s~EVsRs-----------laac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a-dpe~V~~q  200 (650)
T KOG0462|consen  135 HVDF--SGEVSRS-----------LAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA-DPERVENQ  200 (650)
T ss_pred             cccc--cceeheh-----------hhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC-CHHHHHHH
Confidence            8651  1122211           12299999999999999998877666666778999999999999643 34455555


Q ss_pred             HHHHHH
Q 026538          228 IEEVIF  233 (237)
Q Consensus       228 l~~~l~  233 (237)
                      +.+.+.
T Consensus       201 ~~~lF~  206 (650)
T KOG0462|consen  201 LFELFD  206 (650)
T ss_pred             HHHHhc
Confidence            555543

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.37  E-value=1.3e-12  Score=101.59  Aligned_cols=57  Identities=33%  Similarity=0.545  Sum_probs=51.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~  148 (237)
                      ...+++++|.||+|||||+|+|++. ....+++.||+|+.......+..+.++||||+
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~-~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRS-RACNVGATPGVTKSMQEVHLDKKVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCc-ccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence            4579999999999999999999998 55788999999999888877778999999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.37  E-value=3.1e-12  Score=94.11  Aligned_cols=111  Identities=19%  Similarity=0.192  Sum_probs=75.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-----cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .++.+|+|.+|+|||||+-.+....  ...+.+..+-.|..+..     ....+.||||+|.          +.+..+..
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddt--Fs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq----------ErFrtits   75 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDT--FSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ----------ERFRTITS   75 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcc--cccceEEEeeeeEEEEEeecCCcEEEEEEeecccH----------HHHHHHHH
Confidence            3577899999999999999888763  11121111112222221     2356899999993          45667777


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~piilv~NK~Dl~~  217 (237)
                      .|++.   .+++++|+|...+-+... ..|++.+...  .+|-++|+||.|...
T Consensus        76 tyyrg---thgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~  126 (198)
T KOG0079|consen   76 TYYRG---THGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE  126 (198)
T ss_pred             HHccC---CceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc
Confidence            78776   899999999876543332 4666666653  578899999999864

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=5.7e-12  Score=116.09  Aligned_cols=130  Identities=18%  Similarity=0.264  Sum_probs=91.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccccee-eccC---------------CCCceEE---EEEEEcC-CeEEEEeCCCCC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-RTSD---------------KPGLTQT---INFFKLG-TKLCLVDLPGYG  149 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~-~~~~---------------~~g~t~~---~~~~~~~-~~~~liDTpG~~  149 (237)
                      .+..+|.++|+..+|||||..+|+-..+.. ....               .+|.|..   +..++.+ ..+++|||||+.
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV   87 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV   87 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence            456799999999999999998887432111 0001               1233332   2445554 899999999986


Q ss_pred             CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                      +-  ..           ...+.+..+|++++|+|+..++.++...+++++...++|.++++||+|.... +.....+++.
T Consensus        88 DF--t~-----------EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a-~~~~~~~~l~  153 (697)
T COG0480          88 DF--TI-----------EVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGA-DFYLVVEQLK  153 (697)
T ss_pred             cc--HH-----------HHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccccc-ChhhhHHHHH
Confidence            51  11           1112222289999999999999999999999999999999999999998743 3444555555


Q ss_pred             HHHH
Q 026538          230 EVIF  233 (237)
Q Consensus       230 ~~l~  233 (237)
                      ..+.
T Consensus       154 ~~l~  157 (697)
T COG0480         154 ERLG  157 (697)
T ss_pred             HHhC
Confidence            5544

>cd01900 YchF YchF subfamily

Probab=99.36  E-value=1.6e-12  Score=107.79  Aligned_cols=83  Identities=25%  Similarity=0.309  Sum_probs=60.4

Q ss_pred             EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---C-----------------CeEEEEeCCCCCCcccc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-----------------TKLCLVDLPGYGFAYAK  154 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~-----------------~~~~liDTpG~~~~~~~  154 (237)
                      |+++|.||||||||+|+|++..  ..+++.|++|.+......   +                 ..+.++||||+......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~--~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCC--CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            5799999999999999999984  478888999977543211   1                 14899999998754322


Q ss_pred             hHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~  185 (237)
                      .      ..+...++.....+|++++|+|+.
T Consensus        79 ~------~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          79 G------EGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             h------hHHHHHHHHHHHhCCEEEEEEeCc
Confidence            1      123345555555699999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK12740 elongation factor G; Reviewed

Probab=99.36  E-value=1e-11  Score=115.74  Aligned_cols=122  Identities=23%  Similarity=0.270  Sum_probs=82.0

Q ss_pred             ecCCCCchhhHHHHHhccccee----------eccC------CCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHH
Q 026538           98 AGRSNVGKSSMLNALTRQWGVV----------RTSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVK  158 (237)
Q Consensus        98 vG~~~~GKSTLin~L~~~~~~~----------~~~~------~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~  158 (237)
                      +|++|+|||||+++|+...+..          .+.+      .+|.|...   .+...+..+.+|||||+.+      . 
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~------~-   73 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD------F-   73 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH------H-
Confidence            5999999999999997543210          0111      13344333   3344578899999999743      1 


Q ss_pred             HHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                         ......++.   .+|++++|+|++.+........+..+...++|+++|+||+|+... ......+.+++.++
T Consensus        74 ---~~~~~~~l~---~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~-~~~~~~~~l~~~l~  141 (668)
T PRK12740         74 ---TGEVERALR---VLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA-DFFRVLAQLQEKLG  141 (668)
T ss_pred             ---HHHHHHHHH---HhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHHC
Confidence               111122222   289999999999888777777778887888999999999998753 34455566665543

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=6.7e-12  Score=97.98  Aligned_cols=129  Identities=19%  Similarity=0.227  Sum_probs=80.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeec-cCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~-~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+.|+++|.++||||+|+-.|........+ +-.|   -...+......+.++|.||+..      +    ..-+..|+.
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep---n~a~~r~gs~~~~LVD~PGH~r------l----R~kl~e~~~  104 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP---NEATYRLGSENVTLVDLPGHSR------L----RRKLLEYLK  104 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeeeeecc---ceeeEeecCcceEEEeCCCcHH------H----HHHHHHHcc
Confidence            368999999999999999887765211111 1111   0112333455589999999743      1    222334555


Q ss_pred             ccccccEEEEEEeCCCCCChhH----HHHHHHHH-----hcCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD----HELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFY  234 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~----~~~~~~l~-----~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~  234 (237)
                      ....+-+|+||+|+..- ...-    ..++..+.     ...+|++++.||.|+......+.+.+.+++.+..
T Consensus       105 ~~~~akaiVFVVDSa~f-~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~  176 (238)
T KOG0090|consen  105 HNYSAKAIVFVVDSATF-LKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHK  176 (238)
T ss_pred             ccccceeEEEEEecccc-chhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHH
Confidence            44558999999997632 2222    22233332     3367899999999998766666666777766654

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.35  E-value=1.2e-11  Score=106.68  Aligned_cols=114  Identities=27%  Similarity=0.347  Sum_probs=84.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceee--------------ccCCCCceE---EEEEEEcCCeEEEEeCCCCCCccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR--------------TSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFAYA  153 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~--------------~~~~~g~t~---~~~~~~~~~~~~liDTpG~~~~~~  153 (237)
                      ...+|+++.+...|||||+..|+.+.+...              .....|.|.   ...+.+.+..++++||||+.+  -
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD--F   81 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD--F   81 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC--c
Confidence            456999999999999999999997642111              011233442   234455688999999999865  2


Q ss_pred             chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      ..+++    ..+..       +|.+++++|+..+..++...+++..-..+.+.|+|+||+|...
T Consensus        82 GGEVE----Rvl~M-------VDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~  134 (603)
T COG1217          82 GGEVE----RVLSM-------VDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPD  134 (603)
T ss_pred             cchhh----hhhhh-------cceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCC
Confidence            22232    22222       8999999999999999999988888888999999999999874

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.35  E-value=3.6e-12  Score=109.10  Aligned_cols=85  Identities=22%  Similarity=0.282  Sum_probs=63.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE--Ec-C-----------------CeEEEEeCCCCCCcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL-G-----------------TKLCLVDLPGYGFAY  152 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~-----------------~~~~liDTpG~~~~~  152 (237)
                      ++|+++|.||||||||+|+|++..  ..+++.|++|.+....  .. +                 ..+.++||||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            589999999999999999999984  6788999999776421  11 1                 248999999987532


Q ss_pred             cchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~  185 (237)
                      ...      ..+...++.....+|++++|+|+.
T Consensus        81 ~~g------~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKG------EGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             ChH------HHHHHHHHHHHHhCCEEEEEEeCC
Confidence            221      234455666666699999999975

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=1.6e-11  Score=90.25  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=73.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-EEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...+++++|.+.+|||||+-+.++.......-..-|..-.+ .++.  ...++.+|||+|..          .+..+...
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqE----------ryrtiTTa   89 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQE----------RYRTITTA   89 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccch----------hhhHHHHH
Confidence            45699999999999999999999873211111111111111 1222  24678999999953          24566667


Q ss_pred             HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      |++.   ++++++++|....-+-. ...+.-++..   .+.|+|+|.||||+-++
T Consensus        90 yyRg---amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e  141 (193)
T KOG0093|consen   90 YYRG---AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE  141 (193)
T ss_pred             Hhhc---cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc
Confidence            7776   99999999976431111 1233333332   37899999999998643

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.32  E-value=9.6e-12  Score=91.44  Aligned_cols=111  Identities=22%  Similarity=0.302  Sum_probs=72.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ..+.++|-.++|||||+|.++.........    .|.....   ......+.+||.||...      .+..|+    .|.
T Consensus        21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmi----ptvGfnmrk~tkgnvtiklwD~gGq~r------frsmWe----ryc   86 (186)
T KOG0075|consen   21 MELSLVGLQNSGKTTLVNVIARGQYLEDMI----PTVGFNMRKVTKGNVTIKLWDLGGQPR------FRSMWE----RYC   86 (186)
T ss_pred             eeEEEEeeccCCcceEEEEEeeccchhhhc----ccccceeEEeccCceEEEEEecCCCcc------HHHHHH----HHh
Confidence            488999999999999999988753222222    2333332   22357799999999542      333444    444


Q ss_pred             hccccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCChHH
Q 026538          170 STRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~~~~  220 (237)
                      +.   +++++|++|++++  ++....++...+..   .++|+++++||.|+...-.
T Consensus        87 R~---v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~  139 (186)
T KOG0075|consen   87 RG---VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS  139 (186)
T ss_pred             hc---CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc
Confidence            44   9999999998863  22222333333332   4799999999999975433

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=4.7e-11  Score=88.40  Aligned_cols=118  Identities=15%  Similarity=0.112  Sum_probs=76.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++++++|+.|.|||.|+..+.....-..++..-|..-...+...   ..++.||||+|.          +.+....+.
T Consensus         8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQ----------ErFRSVtRs   77 (214)
T KOG0086|consen    8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ----------ERFRSVTRS   77 (214)
T ss_pred             hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccH----------HHHHHHHHH
Confidence            3579999999999999999999876321222333332222222333   356899999994          346677788


Q ss_pred             HHhccccccEEEEEEeCCCCCChh-HHHHHHHHH---hcCCcEEEEEecCCCCChHHH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLME---RSQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~---~~~~piilv~NK~Dl~~~~~~  221 (237)
                      |++.   +.+.++|+|....-+.. ...|+...+   ..++-+++++||.|+-+..++
T Consensus        78 YYRG---AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V  132 (214)
T KOG0086|consen   78 YYRG---AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREV  132 (214)
T ss_pred             Hhcc---ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhh
Confidence            8877   78889999976432211 123333332   235668899999999765554

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.29  E-value=1.4e-11  Score=89.96  Aligned_cols=119  Identities=18%  Similarity=0.266  Sum_probs=82.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      +.++|+++|-.|+|||||+..|.+. +.....+..|.......+.....+++||.-|...      ++..|..    |+.
T Consensus        16 rEirilllGldnAGKTT~LKqL~sE-D~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~------IRpyWsN----Yye   84 (185)
T KOG0074|consen   16 REIRILLLGLDNAGKTTFLKQLKSE-DPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRG------IRPYWSN----YYE   84 (185)
T ss_pred             ceEEEEEEecCCCcchhHHHHHccC-ChhhccccCCcceEEEeecCcEEEEEEecCCccc------cchhhhh----hhh
Confidence            4579999999999999999999998 5555566655544444445568899999999543      4444544    444


Q ss_pred             ccccccEEEEEEeCCCC--CChhHHHHHHHH---HhcCCcEEEEEecCCCCChHHHHH
Q 026538          171 TRVSLKRVCLLIDTKWG--VKPRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVAR  223 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l---~~~~~piilv~NK~Dl~~~~~~~~  223 (237)
                      +   .|.++||+|+.+.  +.+...++.+.+   +-..+|+.+..||-|++.....++
T Consensus        85 n---vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~ee  139 (185)
T KOG0074|consen   85 N---VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEE  139 (185)
T ss_pred             c---cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHH
Confidence            4   9999999997652  222233333333   334789999999999985544433

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.28  E-value=2.3e-11  Score=98.50  Aligned_cols=88  Identities=19%  Similarity=0.216  Sum_probs=56.0

Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChh-----HHHHHHHHHhcCCcEEEEEec
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-----DHELISLMERSQTKYQVVLTK  212 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~-----~~~~~~~l~~~~~piilv~NK  212 (237)
                      ..++|+||||..+......-    ..++-..+.+.. .-+|+||+|+...-.+.     -......+.+...|+++|+||
T Consensus       116 ~~~~liDTPGQIE~FtWSAs----GsIIte~lass~-ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK  190 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSAS----GSIITETLASSF-PTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNK  190 (366)
T ss_pred             cCEEEEcCCCceEEEEecCC----ccchHhhHhhcC-CeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEec
Confidence            34899999997653222111    122222232222 57789999976533222     245567778889999999999


Q ss_pred             CCCCChHHHHHHHHHHHH
Q 026538          213 TDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       213 ~Dl~~~~~~~~~~~~l~~  230 (237)
                      +|+.+.+-..++...+++
T Consensus       191 ~Dv~d~~fa~eWm~DfE~  208 (366)
T KOG1532|consen  191 TDVSDSEFALEWMTDFEA  208 (366)
T ss_pred             ccccccHHHHHHHHHHHH
Confidence            999987766666655544

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=9.5e-12  Score=95.13  Aligned_cols=115  Identities=17%  Similarity=0.241  Sum_probs=77.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ...+|+++|--|+||||++..|-..+ .....+.-|...+... ..+..+.+||.-|...      .+..|    +.|+.
T Consensus        16 ~e~~IlmlGLD~AGKTTILykLk~~E-~vttvPTiGfnVE~v~-ykn~~f~vWDvGGq~k------~R~lW----~~Y~~   83 (181)
T KOG0070|consen   16 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTVPTIGFNVETVE-YKNISFTVWDVGGQEK------LRPLW----KHYFQ   83 (181)
T ss_pred             ceEEEEEEeccCCCceeeeEeeccCC-cccCCCccccceeEEE-EcceEEEEEecCCCcc------cccch----hhhcc
Confidence            44699999999999999999988773 2333343343333222 2388899999999532      33333    44554


Q ss_pred             ccccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCChHH
Q 026538          171 TRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~~~~  220 (237)
                      .   .+++|||+|+++.  +.+...++.+.+..   .+.|+++..||.|+...-.
T Consensus        84 ~---t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als  135 (181)
T KOG0070|consen   84 N---TQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS  135 (181)
T ss_pred             C---CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC
Confidence            4   8999999999863  33333444444443   3689999999999874433

>COG1161 Predicted GTPases [General function prediction only]

Probab=99.26  E-value=9.1e-12  Score=106.05  Aligned_cols=60  Identities=35%  Similarity=0.557  Sum_probs=54.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA  151 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~  151 (237)
                      ...+++++|.||+|||||||+|++. ..+.+++.||+|+..++...+..+.|+||||+..+
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~  190 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPP  190 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCCC
Confidence            3468999999999999999999999 56889999999999999999889999999998654

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.25  E-value=1.7e-11  Score=92.24  Aligned_cols=55  Identities=38%  Similarity=0.536  Sum_probs=48.6

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCC
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG  149 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~  149 (237)
                      +++++|.+|+|||||+|+|++. ....++..+|+|++......+..+.+|||||+.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~  139 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGK-KKVSVSATPGKTKHFQTIFLTPTITLCDCPGLV  139 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCcccceEEEEeCCCEEEEECCCcC
Confidence            8999999999999999999998 445788889999988877777789999999975

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.25  E-value=2.6e-11  Score=105.79  Aligned_cols=85  Identities=22%  Similarity=0.213  Sum_probs=61.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---------------------------cCCeEEEEeC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDL  145 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---------------------------~~~~~~liDT  145 (237)
                      ++|+++|.||+|||||+|+|++..  ..+++.+++|.+.....                           ....+.++||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            589999999999999999999884  45678888887654311                           1245789999


Q ss_pred             CCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538          146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (237)
Q Consensus       146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~  185 (237)
                      ||+.......      ..+...++.....+|++++|+|++
T Consensus        80 aGl~~ga~~g------~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEG------RGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence            9986532111      133445555555599999999986

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.24  E-value=2.6e-11  Score=101.89  Aligned_cols=62  Identities=34%  Similarity=0.604  Sum_probs=54.5

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY  152 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~  152 (237)
                      ....+++++|.||+|||||+|+|++. ....+++.||+|++..+...+..+.++||||+..+.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~  180 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK  180 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence            34578999999999999999999998 556789999999999888888889999999987653

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.23  E-value=2.1e-11  Score=93.19  Aligned_cols=58  Identities=34%  Similarity=0.487  Sum_probs=50.4

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~  148 (237)
                      ....+++++|.+|+|||||+|+|++. ....++..+++|++......+..+.++||||+
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNK-LKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHcc-ccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence            35679999999999999999999998 33567888999999888777788999999995

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01855 YqeH YqeH

Probab=99.23  E-value=1.8e-11  Score=96.72  Aligned_cols=57  Identities=35%  Similarity=0.475  Sum_probs=48.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccc-------eeeccCCCCceEEEEEEEcCCeEEEEeCCCC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWG-------VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~-------~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~  148 (237)
                      ...++++|.+|+|||||+|+|++...       ...++..||+|++......+..+.++||||+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence            35899999999999999999998531       1356788999999988877767999999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.23  E-value=3.9e-11  Score=85.97  Aligned_cols=116  Identities=20%  Similarity=0.199  Sum_probs=75.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      .+++++|..|+|||||+++|-|..- .     +-.|+.+.+...+    .+||||-..   .  .    ..+..+.+...
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~-l-----ykKTQAve~~d~~----~IDTPGEy~---~--~----~~~Y~aL~tt~   62 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDT-L-----YKKTQAVEFNDKG----DIDTPGEYF---E--H----PRWYHALITTL   62 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchh-h-----hcccceeeccCcc----ccCCchhhh---h--h----hHHHHHHHHHh
Confidence            4899999999999999999999841 1     1135555554332    499999321   0  1    12233334445


Q ss_pred             ccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                      .++|++++|-.+.++.+.....+..   -...|+|-|++|+|+.+..++......+.+
T Consensus        63 ~dadvi~~v~~and~~s~f~p~f~~---~~~k~vIgvVTK~DLaed~dI~~~~~~L~e  117 (148)
T COG4917          63 QDADVIIYVHAANDPESRFPPGFLD---IGVKKVIGVVTKADLAEDADISLVKRWLRE  117 (148)
T ss_pred             hccceeeeeecccCccccCCccccc---ccccceEEEEecccccchHhHHHHHHHHHH
Confidence            5589999998877654433322222   224679999999999987777766665554

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=2.9e-10  Score=94.87  Aligned_cols=130  Identities=21%  Similarity=0.280  Sum_probs=92.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc-----ceeeccCCCCceEEEEEEEc------------CCeEEEEeCCCCCCccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKL------------GTKLCLVDLPGYGFAYA  153 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~~~g~t~~~~~~~~------------~~~~~liDTpG~~~~~~  153 (237)
                      -..++.++|...+|||||..+|..-.     +....+..+|.|.|.-+...            ...++++|+||+.    
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa----   81 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA----   81 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH----
Confidence            34699999999999999999997542     11233445667777644321            2347999999974    


Q ss_pred             chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                               .+++..+....-.|..++|+|+..+.+.+..+.+-.-.......++|+||+|.+++.+....++.+...++
T Consensus        82 ---------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~  152 (522)
T KOG0461|consen   82 ---------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVR  152 (522)
T ss_pred             ---------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHH
Confidence                     45666666555589999999999888887766554444445678999999999988776665555554443

>PRK13768 GTPase; Provisional

Probab=99.20  E-value=1.2e-10  Score=96.08  Aligned_cols=84  Identities=25%  Similarity=0.282  Sum_probs=53.7

Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHH-----hcCCcEEEEEec
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTK  212 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~-----~~~~piilv~NK  212 (237)
                      ..+.+|||||..+...   ....+..+.+.... .. .+++++|+|+.......+.....++.     ..++|+++|+||
T Consensus        97 ~~~~~~d~~g~~~~~~---~~~~~~~~~~~l~~-~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK  171 (253)
T PRK13768         97 ADYVLVDTPGQMELFA---FRESGRKLVERLSG-SS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNK  171 (253)
T ss_pred             CCEEEEeCCcHHHHHh---hhHHHHHHHHHHHh-cC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence            4699999999654221   12223333333222 22 78999999998766666644433332     468999999999


Q ss_pred             CCCCChHHHHHHHH
Q 026538          213 TDTVFPIDVARRAM  226 (237)
Q Consensus       213 ~Dl~~~~~~~~~~~  226 (237)
                      +|+.+..+......
T Consensus       172 ~D~~~~~~~~~~~~  185 (253)
T PRK13768        172 ADLLSEEELERILK  185 (253)
T ss_pred             HhhcCchhHHHHHH
Confidence            99987766554444

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.19  E-value=4e-10  Score=94.32  Aligned_cols=127  Identities=18%  Similarity=0.188  Sum_probs=86.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccce---------eecc----------------------CCCCceEEEEEEE---c
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTS----------------------DKPGLTQTINFFK---L  136 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~---------~~~~----------------------~~~g~t~~~~~~~---~  136 (237)
                      ...+++-+|...-||||||-+|+-..+.         ...+                      ...|.|.|+.+..   .
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~   84 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE   84 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence            3468999999999999999999853210         0001                      1234777775543   3


Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT  215 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl  215 (237)
                      ..+|.+.||||+.             ++.+........||+.++++|+..++.++.....-...-.+++ +++.+||+||
T Consensus        85 KRkFIiADTPGHe-------------QYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDL  151 (431)
T COG2895          85 KRKFIIADTPGHE-------------QYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDL  151 (431)
T ss_pred             cceEEEecCCcHH-------------HHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence            6779999999973             3455555555569999999999999888776544444444554 8889999999


Q ss_pred             CCh--HHHHHHHHHHHH
Q 026538          216 VFP--IDVARRAMQIEE  230 (237)
Q Consensus       216 ~~~--~~~~~~~~~l~~  230 (237)
                      ++-  +-..++..++..
T Consensus       152 vdy~e~~F~~I~~dy~~  168 (431)
T COG2895         152 VDYSEEVFEAIVADYLA  168 (431)
T ss_pred             cccCHHHHHHHHHHHHH
Confidence            853  333344444443

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.18  E-value=4.9e-11  Score=99.69  Aligned_cols=60  Identities=32%  Similarity=0.536  Sum_probs=52.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA  151 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~  151 (237)
                      ...+++++|.||+|||||+|+|.+. ....++..||+|+.......+..+.++||||+..+
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~  176 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWP  176 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCcccC
Confidence            4578999999999999999999988 55678899999999988887778999999998554

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=5.3e-10  Score=96.18  Aligned_cols=126  Identities=22%  Similarity=0.334  Sum_probs=100.8

Q ss_pred             EEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .|+..|....|||||+.++.+.. +..+.....|+|.|+.+++.   +..+.++|.||+.             +++...+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~-------------~~i~~mi   68 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHP-------------DFISNLL   68 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcH-------------HHHHHHH
Confidence            47788999999999999999873 22334556889999988775   5679999999984             3455555


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcE-EEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pi-ilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                      ......|..++|||+..++..+..+.+..+...+++- ++|+||+|+.++..++...+++.+.+
T Consensus        69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l  132 (447)
T COG3276          69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADL  132 (447)
T ss_pred             hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhc
Confidence            5666689999999999999999999999998888774 99999999998877666666655543

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=5.5e-10  Score=98.75  Aligned_cols=135  Identities=19%  Similarity=0.266  Sum_probs=91.3

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccc-----------------------------eeeccCCCCceEEEEE---EEcC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTINF---FKLG  137 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~-----------------------------~~~~~~~~g~t~~~~~---~~~~  137 (237)
                      .....++++|...+|||||+..|+-.-+                             ........|.|.++..   ....
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~  254 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS  254 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence            3556889999999999999988873210                             0111224556666532   2235


Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-----CC--hhHHHHHHHHHhcCCc-EEEE
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----VK--PRDHELISLMERSQTK-YQVV  209 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-----~~--~~~~~~~~~l~~~~~p-iilv  209 (237)
                      ..++|+|+||+.+             ++...+.....+|+.++|+|++.+     +.  .+..+....++..++. ++++
T Consensus       255 ~~~tliDaPGhkd-------------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qliva  321 (603)
T KOG0458|consen  255 KIVTLIDAPGHKD-------------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVA  321 (603)
T ss_pred             eeEEEecCCCccc-------------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEE
Confidence            6799999999753             455555555669999999998753     22  2335666666666654 8899


Q ss_pred             EecCCCC--ChHHHHHHHHHHHHHHHhhcC
Q 026538          210 LTKTDTV--FPIDVARRAMQIEEVIFYLCG  237 (237)
Q Consensus       210 ~NK~Dl~--~~~~~~~~~~~l~~~l~~~~g  237 (237)
                      +||+|++  +.+..+++...+...|...||
T Consensus       322 iNKmD~V~Wsq~RF~eIk~~l~~fL~~~~g  351 (603)
T KOG0458|consen  322 INKMDLVSWSQDRFEEIKNKLSSFLKESCG  351 (603)
T ss_pred             eecccccCccHHHHHHHHHHHHHHHHHhcC
Confidence            9999998  455556666777766666655

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.15  E-value=1.8e-10  Score=91.34  Aligned_cols=113  Identities=14%  Similarity=0.062  Sum_probs=70.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCC--ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG--LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g--~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ..+|+++|.+|+|||+|...+++........+...  ..+.+........+.|+||+|..+          +..+...|+
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~----------~~~~~~~~~   72 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEE----------FSAMRDLYI   72 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCccc----------ChHHHHHhh
Confidence            35899999999999999999888743222222221  122222322345678999999432          223444555


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                      ..   .++.++|++..+..+... ..+.+.+.    ...+|+++|+||+|+..
T Consensus        73 ~~---~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~  122 (196)
T KOG0395|consen   73 RN---GDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER  122 (196)
T ss_pred             cc---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence            55   688888888765433333 23333332    23589999999999975

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=2.6e-10  Score=85.63  Aligned_cols=111  Identities=17%  Similarity=0.273  Sum_probs=73.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCC-CceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~-g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      -+++++|--|+|||||++.|-.. +...--+.- +|+....+  .+..++.+|.-|+..      .++.|.+....    
T Consensus        21 gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHPTSE~l~I--g~m~ftt~DLGGH~q------Arr~wkdyf~~----   87 (193)
T KOG0077|consen   21 GKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSEELSI--GGMTFTTFDLGGHLQ------ARRVWKDYFPQ----   87 (193)
T ss_pred             ceEEEEeecCCchhhHHHHHccc-cccccCCCcCCChHHhee--cCceEEEEccccHHH------HHHHHHHHHhh----
Confidence            48999999999999999999877 333322222 23333333  378899999999642      34556555444    


Q ss_pred             cccccEEEEEEeCCC--CCChhHHHHH---HHHHhcCCcEEEEEecCCCCChH
Q 026538          172 RVSLKRVCLLIDTKW--GVKPRDHELI---SLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~--~~~~~~~~~~---~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                         +|++++++|+.+  .+.+...+.-   ..-.-.++|+++..||+|.....
T Consensus        88 ---v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~  137 (193)
T KOG0077|consen   88 ---VDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA  137 (193)
T ss_pred             ---hceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence               999999999864  2333222211   11112479999999999987544

>cd01856 YlqF YlqF

Probab=99.13  E-value=1.9e-10  Score=89.43  Aligned_cols=58  Identities=34%  Similarity=0.617  Sum_probs=49.8

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~  148 (237)
                      +..++++++|.+|+|||||+|+|++. ....++..+++|.....+..+..+.++||||+
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGK-KVAKVGNKPGVTKGIQWIKISPGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence            34578999999999999999999998 44577888999999887776677999999996

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.13  E-value=2.6e-10  Score=85.47  Aligned_cols=113  Identities=25%  Similarity=0.264  Sum_probs=74.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE--------cCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--------LGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~--------~~~~~~liDTpG~~~~~~~~~~~~~~~~  163 (237)
                      .+++.++|++-+|||||+..++... .+..++   .|..+.++.        ...++.+|||+|.          +.+..
T Consensus         8 qfrlivigdstvgkssll~~ft~gk-faelsd---ptvgvdffarlie~~pg~riklqlwdtagq----------erfrs   73 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGK-FAELSD---PTVGVDFFARLIELRPGYRIKLQLWDTAGQ----------ERFRS   73 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCc-ccccCC---CccchHHHHHHHhcCCCcEEEEEEeeccch----------HHHHH
Confidence            3588999999999999999999873 333332   233322211        1356899999994          34678


Q ss_pred             HHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-----cCCcEEEEEecCCCCChHHH
Q 026538          164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~piilv~NK~Dl~~~~~~  221 (237)
                      +.+.|+++   .-++++|+|.+..-+.+. ..|+....-     ..+-+.+|+.|+|+....++
T Consensus        74 itksyyrn---svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV  134 (213)
T KOG0091|consen   74 ITKSYYRN---SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV  134 (213)
T ss_pred             HHHHHhhc---ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc
Confidence            88899988   788999999775432222 333333322     12336789999999754433

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.13  E-value=2.2e-10  Score=99.17  Aligned_cols=130  Identities=22%  Similarity=0.238  Sum_probs=86.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccce-------------eeccCCCCceEEEE-----EEE---cCCeEEEEeCCCC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTIN-----FFK---LGTKLCLVDLPGY  148 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~-------------~~~~~~~g~t~~~~-----~~~---~~~~~~liDTpG~  148 (237)
                      .+..+..++.+...|||||..+|+...+.             -.....+|.|...+     +..   ..+.++++||||+
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            45678999999999999999999864210             01122455564432     221   1366899999998


Q ss_pred             CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538          149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI  228 (237)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l  228 (237)
                      .+-  .-++.+        .+   ..|.+.++|+|++.++..+...-+-..-..+.-++.|+||+||.. .+.++..+++
T Consensus        87 VDF--sYEVSR--------SL---AACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~-Adpervk~eI  152 (603)
T COG0481          87 VDF--SYEVSR--------SL---AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPA-ADPERVKQEI  152 (603)
T ss_pred             cce--EEEehh--------hH---hhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCC-CCHHHHHHHH
Confidence            651  111111        11   129999999999999877765443334456788999999999964 3456677777


Q ss_pred             HHHHH
Q 026538          229 EEVIF  233 (237)
Q Consensus       229 ~~~l~  233 (237)
                      ++.++
T Consensus       153 e~~iG  157 (603)
T COG0481         153 EDIIG  157 (603)
T ss_pred             HHHhC
Confidence            77665

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=4e-10  Score=82.34  Aligned_cols=116  Identities=15%  Similarity=0.255  Sum_probs=74.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ..+|+.+|-.++||||++-.|.-..   .+...|.+--.+. ....+..+++||.-|.      +.++..|.    .|+.
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~---~~~~ipTvGFnvetVtykN~kfNvwdvGGq------d~iRplWr----hYy~   83 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQ---SVTTIPTVGFNVETVTYKNVKFNVWDVGGQ------DKIRPLWR----HYYT   83 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCC---CcccccccceeEEEEEeeeeEEeeeeccCc------hhhhHHHH----hhcc
Confidence            3589999999999999999988762   2222322222222 2224678999999994      33555544    4554


Q ss_pred             ccccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCChHHHHH
Q 026538          171 TRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVAR  223 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~~~~~~~  223 (237)
                      .   ..+++||+|+...  +.+...++.+.+..   ...|+++..||-|+......++
T Consensus        84 g---tqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqe  138 (180)
T KOG0071|consen   84 G---TQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQE  138 (180)
T ss_pred             C---CceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHH
Confidence            4   7899999997653  22222344444433   2578999999999975443333

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=2.6e-10  Score=103.02  Aligned_cols=111  Identities=25%  Similarity=0.419  Sum_probs=85.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEEc-------------------CCeEEEEeCCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-------------------GTKLCLVDLPGYG  149 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~~-------------------~~~~~liDTpG~~  149 (237)
                      +.|.++|+|+..+|||-|+..+.+.+  ...+...|.|+.+-  ++..                   -+.+.+|||||+.
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tN--VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTN--VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccc--cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            46899999999999999999999874  44555566666652  2221                   1348999999974


Q ss_pred             CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      .          |..+-..   ....||++++|+|..+++.++..+-++.++..+.|+|+++||+|.+
T Consensus       552 s----------FtnlRsr---gsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRL  605 (1064)
T KOG1144|consen  552 S----------FTNLRSR---GSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRL  605 (1064)
T ss_pred             h----------hhhhhhc---cccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhh
Confidence            3          2222222   2223999999999999999999999999999999999999999985

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=5.5e-10  Score=99.93  Aligned_cols=129  Identities=19%  Similarity=0.242  Sum_probs=85.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceee---------cc------CCCCceEEE---EEE-E----cCCeEEEEeCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR---------TS------DKPGLTQTI---NFF-K----LGTKLCLVDLPG  147 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~---------~~------~~~g~t~~~---~~~-~----~~~~~~liDTpG  147 (237)
                      ...+|+++|+-++|||+|+..|........         ..      ..+|++...   ... .    ...-++++||||
T Consensus       127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG  206 (971)
T KOG0468|consen  127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG  206 (971)
T ss_pred             eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence            457899999999999999999987631100         00      011111111   000 0    134589999999


Q ss_pred             CCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC------ChHHH
Q 026538          148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV------FPIDV  221 (237)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~------~~~~~  221 (237)
                      +..             +..........+|++++|+|+..++.-....+++..-..+.|+++|+||+|++      ++...
T Consensus       207 HVn-------------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DA  273 (971)
T KOG0468|consen  207 HVN-------------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDA  273 (971)
T ss_pred             ccc-------------chHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHH
Confidence            754             22222222233899999999999999888889988888899999999999974      45554


Q ss_pred             HHHHHHHHHHH
Q 026538          222 ARRAMQIEEVI  232 (237)
Q Consensus       222 ~~~~~~l~~~l  232 (237)
                      ...+..+...+
T Consensus       274 Y~KLrHii~~i  284 (971)
T KOG0468|consen  274 YYKLRHIIDEI  284 (971)
T ss_pred             HHHHHHHHHHh
Confidence            44444444433

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.10  E-value=7.7e-11  Score=89.54  Aligned_cols=116  Identities=19%  Similarity=0.173  Sum_probs=73.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccce---eeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---VRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~---~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++++++|..++||||+|.+.+..-..   ...-......+++.....+..+.+|||+|..          .+..+..+
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqe----------EfDaItkA   88 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQE----------EFDAITKA   88 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccch----------hHHHHHHH
Confidence            3479999999999999999999965110   0000111112222333335667899999953          35667788


Q ss_pred             HHhccccccEEEEEEeCCCCCCh-hHHHHHHHHHh--cCCcEEEEEecCCCCChH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMER--SQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~--~~~piilv~NK~Dl~~~~  219 (237)
                      |++.   +.+.++|+...+..+. ...+|.+.+..  ..+|.++|-||+|+++..
T Consensus        89 yyrg---aqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds  140 (246)
T KOG4252|consen   89 YYRG---AQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDS  140 (246)
T ss_pred             Hhcc---ccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhh
Confidence            8877   7777778766543222 22344444433  369999999999998543

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=1.3e-09  Score=98.84  Aligned_cols=127  Identities=20%  Similarity=0.209  Sum_probs=89.6

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCc---------------eEEE---EEEEcCCeEEEEeCCCCCCc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---------------TQTI---NFFKLGTKLCLVDLPGYGFA  151 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~---------------t~~~---~~~~~~~~~~liDTpG~~~~  151 (237)
                      .+..++.++.+...|||||...|+..++ .+.+..+|.               |...   .....+..+++||+||+.+-
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asng-vis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf   85 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNG-VISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF   85 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhcc-EechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence            4667999999999999999999998753 333344443               2221   12223677999999998751


Q ss_pred             ccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCC------CChHHHHHHH
Q 026538          152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT------VFPIDVARRA  225 (237)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl------~~~~~~~~~~  225 (237)
                                ...+...   ..-+|+.++++|+..++..+...++++....+..+++|+||+|.      +.+.+....+
T Consensus        86 ----------~sevssa---s~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l  152 (887)
T KOG0467|consen   86 ----------SSEVSSA---SRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHL  152 (887)
T ss_pred             ----------hhhhhhh---hhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHH
Confidence                      1112211   12289999999999999999999999888888999999999994      3455544443


Q ss_pred             HHHHH
Q 026538          226 MQIEE  230 (237)
Q Consensus       226 ~~l~~  230 (237)
                      -.+-+
T Consensus       153 ~r~i~  157 (887)
T KOG0467|consen  153 LRVIE  157 (887)
T ss_pred             HHHHH
Confidence            33333

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.09  E-value=8.8e-10  Score=97.49  Aligned_cols=113  Identities=17%  Similarity=0.186  Sum_probs=72.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCC-CCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~-~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ..+|+++|..|+||||||-+|+..+....+.+. +.++....+.....+..++||+.-.+  .    ......-++.   
T Consensus         9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~--~----~~~l~~Eirk---   79 (625)
T KOG1707|consen    9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSD--D----RLCLRKEIRK---   79 (625)
T ss_pred             ceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccc--h----hHHHHHHHhh---
Confidence            469999999999999999999998533333322 22333344445567799999985321  1    1111111222   


Q ss_pred             ccccccEEEEEEeCCCC--CChhHHHHHHHHHh-----cCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWG--VKPRDHELISLMER-----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~  217 (237)
                          +|+|+++....+.  +......|+-.++.     .++|+|+|+||+|...
T Consensus        80 ----A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~  129 (625)
T KOG1707|consen   80 ----ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD  129 (625)
T ss_pred             ----cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence                8999999876542  22333456665554     3689999999999874

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.08  E-value=1.5e-09  Score=103.96  Aligned_cols=100  Identities=24%  Similarity=0.374  Sum_probs=72.2

Q ss_pred             CchhhHHHHHhcccceeeccCCCCceEEEEEEEc--C-------------------CeEEEEeCCCCCCcccchHHHHHH
Q 026538          103 VGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--G-------------------TKLCLVDLPGYGFAYAKEEVKDAW  161 (237)
Q Consensus       103 ~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~-------------------~~~~liDTpG~~~~~~~~~~~~~~  161 (237)
                      ++||||+.+|.+.+  .......|.|+++-.+..  .                   +.+.+|||||+..          +
T Consensus       472 ~~KTtLLD~iR~t~--v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~----------F  539 (1049)
T PRK14845        472 VHNTTLLDKIRKTR--VAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA----------F  539 (1049)
T ss_pred             cccccHHHHHhCCC--cccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH----------H
Confidence            35999999999884  233444567777633221  0                   2389999999642          1


Q ss_pred             HHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       162 ~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      ..+....   ...+|++++|+|++.++..+..+.+..+...++|+++|+||+|+.+
T Consensus       540 ~~lr~~g---~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        540 TSLRKRG---GSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIP  592 (1049)
T ss_pred             HHHHHhh---cccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcc
Confidence            2222221   2338999999999988888888888888888999999999999964

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=2.1e-10  Score=97.20  Aligned_cols=86  Identities=23%  Similarity=0.260  Sum_probs=65.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---------------------CCeEEEEeCCCCCC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---------------------GTKLCLVDLPGYGF  150 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---------------------~~~~~liDTpG~~~  150 (237)
                      .+++.|||.||||||||+|+++...  +...++|.+|-+.+....                     ..++.++|.+|+..
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~   79 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK   79 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence            3689999999999999999999984  677899999987643210                     23488999999865


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~  185 (237)
                      ..+..      +.+-..|+.+.+++|+|++|+|++
T Consensus        80 GAs~G------eGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          80 GASKG------EGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             CcccC------CCcchHHHHhhhhcCeEEEEEEec
Confidence            43332      234556666667799999999976

>PRK12289 GTPase RsgA; Reviewed

Probab=99.08  E-value=2.9e-10  Score=97.72  Aligned_cols=57  Identities=33%  Similarity=0.486  Sum_probs=45.7

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCC-------ceEEEEEEEcCCeEEEEeCCCCCCc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFA  151 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-------~t~~~~~~~~~~~~~liDTpG~~~~  151 (237)
                      .++|+|.||||||||||+|++.. ...++..++       ||++...+.......|+||||+...
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~-~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~  237 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDV-ELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQP  237 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCcc-ccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccc
Confidence            57999999999999999999873 344555555       8888888876444589999999764

>PRK13796 GTPase YqeH; Provisional

Probab=99.08  E-value=2.2e-10  Score=99.31  Aligned_cols=58  Identities=31%  Similarity=0.412  Sum_probs=48.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc----ceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~----~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~  150 (237)
                      ..++++|.+|||||||+|+|++..    ....++..||||++...+..+....++||||+..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~  222 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIH  222 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccc
Confidence            489999999999999999998642    2355789999999998877766679999999853

>PRK12288 GTPase RsgA; Reviewed

Probab=99.07  E-value=4.3e-10  Score=96.57  Aligned_cols=71  Identities=28%  Similarity=0.338  Sum_probs=50.2

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCC-------ceEEEEEEEcCCeEEEEeCCCCCCcc----cchHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFAY----AKEEVKDAWE  162 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-------~t~~~~~~~~~~~~~liDTpG~~~~~----~~~~~~~~~~  162 (237)
                      .++|+|.||||||||+|+|++.. ...++..++       ||+...++..+....|+||||+.+-.    ..+++...|.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~-~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~  285 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEA-EILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFV  285 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhcccc-ceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhH
Confidence            57999999999999999999874 234444332       78888877765456799999987631    2244555555


Q ss_pred             HHH
Q 026538          163 ELV  165 (237)
Q Consensus       163 ~~~  165 (237)
                      ++.
T Consensus       286 ei~  288 (347)
T PRK12288        286 EFR  288 (347)
T ss_pred             HHH
Confidence            543

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.06  E-value=1.1e-10  Score=88.96  Aligned_cols=59  Identities=29%  Similarity=0.337  Sum_probs=39.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhccccee--ecc----CCCCceEEEEEEEcCCeEEEEeCCCCCCc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVV--RTS----DKPGLTQTINFFKLGTKLCLVDLPGYGFA  151 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~--~~~----~~~g~t~~~~~~~~~~~~~liDTpG~~~~  151 (237)
                      ..++++|++|||||||+|+|++.....  .++    ....||+....+.......|+||||+.+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCcc
Confidence            589999999999999999999873211  111    22347777777777777999999998663

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=3.1e-09  Score=87.13  Aligned_cols=130  Identities=20%  Similarity=0.269  Sum_probs=91.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc--------------ceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYA  153 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~--------------~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~  153 (237)
                      ...+|..+|.-+.|||||.-+|+...              +.++-....|.|...   .+...+..+..+|+||+.+   
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD---   87 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD---   87 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH---
Confidence            34699999999999999999987531              001112234555443   3444467789999999743   


Q ss_pred             chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHHH-HHHHHHH
Q 026538          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARR-AMQIEEV  231 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~~-~~~l~~~  231 (237)
                                +++..+......|+.++|+.+.++..++..+.+-..+..++| +++++||+|+++..++.+. ..++++.
T Consensus        88 ----------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreL  157 (394)
T COG0050          88 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVREL  157 (394)
T ss_pred             ----------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence                      344444444458999999999999889888877777778887 6778999999986666554 3455555


Q ss_pred             HH
Q 026538          232 IF  233 (237)
Q Consensus       232 l~  233 (237)
                      +.
T Consensus       158 Ls  159 (394)
T COG0050         158 LS  159 (394)
T ss_pred             HH
Confidence            54

>cd01859 MJ1464 MJ1464

Probab=99.06  E-value=5.9e-10  Score=85.17  Aligned_cols=57  Identities=37%  Similarity=0.567  Sum_probs=48.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~  148 (237)
                      ...+++++|.+|+|||||+|+|.+. ....+++.+|+|....+...+..+.+|||||+
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITSKIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence            3468899999999999999999987 44567788889988877777778999999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.05  E-value=2e-10  Score=85.54  Aligned_cols=116  Identities=16%  Similarity=0.079  Sum_probs=73.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceee-cc--CCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-TS--DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-~~--~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      -.++++++|..-+|||||+-+.+....... .+  .....++.+........+.||||+|..          .|..+-.-
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQE----------rfHALGPI   81 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQE----------RFHALGPI   81 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchH----------hhhccCce
Confidence            347999999999999999988776521000 00  011133444444445669999999942          34445555


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCChH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~~  219 (237)
                      |++.   .+++++|+|..+.-+.+. ..|...++.   ..+-+++|+||+|+-.+.
T Consensus        82 YYRg---SnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR  134 (218)
T KOG0088|consen   82 YYRG---SNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEER  134 (218)
T ss_pred             EEeC---CCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhh
Confidence            5655   899999999875422222 345444443   356789999999985443

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=99.04  E-value=2.6e-10  Score=99.48  Aligned_cols=59  Identities=39%  Similarity=0.620  Sum_probs=54.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA  151 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~  151 (237)
                      ..+|.+||+|||||||+||+|.|. ....++.+||.|++.+.......+.|.|+||+..+
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfP  372 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFP  372 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCcccc
Confidence            578999999999999999999999 56789999999999999999999999999998665

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=4.4e-09  Score=77.02  Aligned_cols=111  Identities=18%  Similarity=0.173  Sum_probs=73.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC------ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG------LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g------~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ..++..++|..|+|||.|+..+....   ...+.|.      -|+-+.......++.+|||+|.          +.+...
T Consensus        10 yifkyiiigdmgvgkscllhqftekk---fmadcphtigvefgtriievsgqkiklqiwdtagq----------erfrav   76 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKK---FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ----------ERFRAV   76 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHH---HhhcCCcccceecceeEEEecCcEEEEEEeecccH----------HHHHHH
Confidence            45788999999999999999998773   2333332      2333333333567899999994          335566


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---CCcEEEEEecCCCCC
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVF  217 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~piilv~NK~Dl~~  217 (237)
                      .+.|++.   +.+.++|.|....-+... ..|+...+..   +..++++.||+|+-.
T Consensus        77 trsyyrg---aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~  130 (215)
T KOG0097|consen   77 TRSYYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES  130 (215)
T ss_pred             HHHHhcc---ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence            7777776   788889999765433322 2344333332   344788999999854

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=2.1e-09  Score=81.44  Aligned_cols=120  Identities=19%  Similarity=0.256  Sum_probs=74.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccc----eeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~----~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ...|+|+|.-|+|||||+-++-....    ....+.+. +|...+...   .+.++.+||.-|.      +..+..|.. 
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~-~tvgLnig~i~v~~~~l~fwdlgGQ------e~lrSlw~~-   88 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKIT-PTVGLNIGTIEVCNAPLSFWDLGGQ------ESLRSLWKK-   88 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHee-cccceeecceeeccceeEEEEcCCh------HHHHHHHHH-
Confidence            35899999999999999988765420    01111111 222222211   2677999999983      334444544 


Q ss_pred             HHHHHhccccccEEEEEEeCCCC--CChhHHHHHHHH---HhcCCcEEEEEecCCCCChHHHHHHH
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRA  225 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l---~~~~~piilv~NK~Dl~~~~~~~~~~  225 (237)
                         |+..   +++++|++|+.++  +......+-+.+   ...++|+++.+||-|+-+..+..++.
T Consensus        89 ---yY~~---~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~  148 (197)
T KOG0076|consen   89 ---YYWL---AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELD  148 (197)
T ss_pred             ---HHHH---hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHH
Confidence               4444   9999999999863  222222222222   22489999999999997766655543

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.99  E-value=4.9e-09  Score=77.82  Aligned_cols=118  Identities=19%  Similarity=0.235  Sum_probs=73.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc------CCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~------~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ..-+|+++|.-++|||+++..|+-.+. ........|-.|+-....      ...+.|.||+|+...  .       .++
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~-~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~--~-------~eL   77 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNH-VPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG--Q-------QEL   77 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccC-CCCCccccchhhheeEeeecCCChhheEEEeecccccCc--h-------hhh
Confidence            446899999999999999988775532 222333333333322221      345899999998652  1       234


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhHHHHHH-HHHh----cCCcEEEEEecCCCCChHHH
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMER----SQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~-~l~~----~~~piilv~NK~Dl~~~~~~  221 (237)
                      -+.|+..   +|+.++|+++.+.-+.+-.+.++ ++..    ..+|++++.||+|+.++.+.
T Consensus        78 prhy~q~---aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v  136 (198)
T KOG3883|consen   78 PRHYFQF---ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREV  136 (198)
T ss_pred             hHhHhcc---CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhc
Confidence            4555554   89999999876532222222222 2222    25899999999999755543

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.98  E-value=2e-09  Score=87.86  Aligned_cols=76  Identities=24%  Similarity=0.275  Sum_probs=34.8

Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHH-----HHHHHHHhcCCcEEEEEecC
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-----ELISLMERSQTKYQVVLTKT  213 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-----~~~~~l~~~~~piilv~NK~  213 (237)
                      .+.|+||||..+-...   ......++ ..+.. ...-++++++|+...-.+...     ..+..+.+.+.|.+.|+||+
T Consensus        92 ~y~l~DtPGQiElf~~---~~~~~~i~-~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~  166 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTH---SDSGRKIV-ERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKI  166 (238)
T ss_dssp             SEEEEE--SSHHHHHH---SHHHHHHH-HTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--G
T ss_pred             cEEEEeCCCCEEEEEe---chhHHHHH-HHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeecc
Confidence            5999999995431100   01111111 11222 224578899998754333221     11222334689999999999


Q ss_pred             CCCChH
Q 026538          214 DTVFPI  219 (237)
Q Consensus       214 Dl~~~~  219 (237)
                      |+.++.
T Consensus       167 Dl~~~~  172 (238)
T PF03029_consen  167 DLLSKY  172 (238)
T ss_dssp             GGS-HH
T ss_pred             Ccccch
Confidence            999744

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.97  E-value=1.1e-09  Score=89.98  Aligned_cols=70  Identities=29%  Similarity=0.427  Sum_probs=48.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccC-------CCCceEEEEEEEcCCeEEEEeCCCCCCc----ccchHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGFA----YAKEEVKDAW  161 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-------~~g~t~~~~~~~~~~~~~liDTpG~~~~----~~~~~~~~~~  161 (237)
                      ..++++|.+|||||||+|+|++... ..++.       ...||++...+..+ ...|+||||+...    ...+++...|
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~-~~t~~i~~~~~~G~hTT~~~~l~~l~-~~~liDtPG~~~~~l~~~~~~~~~~~f  198 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVK-QQVNDISSKLGLGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQGF  198 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhh-ccccceeccCCCCCCcCCceEEEEcC-CcEEEeCCCccccCCCCCCHHHHHHhC
Confidence            4789999999999999999998732 22222       23488888777663 4589999998763    2224455555


Q ss_pred             HHH
Q 026538          162 EEL  164 (237)
Q Consensus       162 ~~~  164 (237)
                      .++
T Consensus       199 ~e~  201 (245)
T TIGR00157       199 VEF  201 (245)
T ss_pred             HHH
Confidence            553

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.97  E-value=1.3e-09  Score=90.83  Aligned_cols=87  Identities=23%  Similarity=0.251  Sum_probs=65.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--------------------CCeEEEEeCCCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF  150 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--------------------~~~~~liDTpG~~~  150 (237)
                      +.+++.|||.||+|||||+|+|+...  +...+.|.+|.+.+....                    ...+.++|.+|+..
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~--a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSK--AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCC--CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            45699999999999999999999984  448889999988754331                    23489999999865


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~  185 (237)
                      ..+..      ..+-..|+.....+|+++.|+++.
T Consensus        97 GAs~G------~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   97 GASAG------EGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             CcccC------cCchHHHHHhhhhccceeEEEEec
Confidence            43222      134445566666699999999865

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=1.6e-09  Score=80.89  Aligned_cols=116  Identities=16%  Similarity=0.085  Sum_probs=69.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeecc---CCCCceEEEEEEEc---------CCeEEEEeCCCCCCcccchHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKL---------GTKLCLVDLPGYGFAYAKEEVKDA  160 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~---~~~g~t~~~~~~~~---------~~~~~liDTpG~~~~~~~~~~~~~  160 (237)
                      ++.+.+|.+|+||||++-..+.........   .+....+.+.+...         ...+.+|||+|.          +.
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ----------ER   79 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ----------ER   79 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH----------HH
Confidence            567889999999999997776542111000   00111111222111         134789999994          34


Q ss_pred             HHHHHHHHHhccccccEEEEEEeCCCCCCh-hHHHHHHHHHhc----CCcEEEEEecCCCCChHHH
Q 026538          161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS----QTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~~----~~piilv~NK~Dl~~~~~~  221 (237)
                      +..+..+|++.   +-+.++++|....-+. ....|+.+++.+    +.-+++++||+|+.+...+
T Consensus        80 FRSLTTAFfRD---AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V  142 (219)
T KOG0081|consen   80 FRSLTTAFFRD---AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV  142 (219)
T ss_pred             HHHHHHHHHHh---hccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh
Confidence            56667777765   7788889996532222 224566666543    3458999999999765544

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=8.7e-09  Score=92.76  Aligned_cols=71  Identities=10%  Similarity=0.223  Sum_probs=50.0

Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      ..+.++|.||+.-....       ...+..+..   ++|++|||+.+...++....+++......+..+.++.||+|...
T Consensus       206 nDivliDsPGld~~se~-------tswid~~cl---daDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIlnnkwDasa  275 (749)
T KOG0448|consen  206 NDIVLIDSPGLDVDSEL-------TSWIDSFCL---DADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFILNNKWDASA  275 (749)
T ss_pred             ccceeccCCCCCCchhh-------hHHHHHHhh---cCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEEechhhhhc
Confidence            35899999998642111       122222222   29999999999888888888888877776556788889999864


Q ss_pred             h
Q 026538          218 P  218 (237)
Q Consensus       218 ~  218 (237)
                      .
T Consensus       276 s  276 (749)
T KOG0448|consen  276 S  276 (749)
T ss_pred             c
Confidence            3

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.95  E-value=2.8e-09  Score=88.05  Aligned_cols=131  Identities=21%  Similarity=0.251  Sum_probs=81.0

Q ss_pred             CCChhhhHHHHHhhcCCCcceEEeecccccccCCCCCC-----------CCCCChhHHHHHHHhhhh---hhhHHHHhhh
Q 026538           17 QPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDN-----------IPFSTSSERERIEENIFR---NKLEFFAAAK   82 (237)
Q Consensus        17 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~-----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~   82 (237)
                      -|+++++..|++.+....++|.++++.+    ..+.+.           .....-.+..........   +.+..+...-
T Consensus        58 iPLssrn~~~~~~~~~k~riiVlNK~DL----ad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l  133 (335)
T KOG2485|consen   58 IPLSSRNELFQDFLPPKPRIIVLNKMDL----ADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEEL  133 (335)
T ss_pred             cCCccccHHHHHhcCCCceEEEEecccc----cCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHH
Confidence            4777999999999999999999998642    221111           000000111111110000   1111111111


Q ss_pred             ccCCCCCCCCCEEEEecCCCCchhhHHHHHhcc----cceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCc
Q 026538           83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFA  151 (237)
Q Consensus        83 ~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~----~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~  151 (237)
                      .+..+..+..+.+.|+|-||+|||||+|++...    ...+.+...||.|+.+..   +.....+.++||||+.-+
T Consensus       134 ~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P  209 (335)
T KOG2485|consen  134 VRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP  209 (335)
T ss_pred             HHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence            222222356789999999999999999998642    256788999999998853   334677999999998655

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=9.9e-09  Score=90.74  Aligned_cols=123  Identities=15%  Similarity=0.217  Sum_probs=81.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ..+.|+++|+||+|||||+.+|.....-...+...|...-  .......++++.+|.-            +..++.    
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv--vsgK~RRiTflEcp~D------------l~~miD----  129 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV--VSGKTRRITFLECPSD------------LHQMID----  129 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE--eecceeEEEEEeChHH------------HHHHHh----
Confidence            3445679999999999999999876311122333322111  1112456888888841            112221    


Q ss_pred             ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHH-HHHHHHHHHHH
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEEV  231 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~-~~~~~~~l~~~  231 (237)
                      ...-+|+|++++|+..++.-...+++..+..++.| ++-|+|..|+..... +......++..
T Consensus       130 vaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhR  192 (1077)
T COG5192         130 VAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHR  192 (1077)
T ss_pred             HHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhh
Confidence            11228999999999999999999999999999988 566999999985443 33444444443

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.90  E-value=1.5e-08  Score=99.74  Aligned_cols=152  Identities=17%  Similarity=0.180  Sum_probs=87.3

Q ss_pred             hHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeec-------cCCCCceEEEEE
Q 026538           61 SERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-------SDKPGLTQTINF  133 (237)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~-------~~~~g~t~~~~~  133 (237)
                      .+...+..++ +..+..+...+...+......|..+|+|++|+||||+|+.- |... ...       ....+.|+++.+
T Consensus        81 ~~~~~l~~~~-~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~c~w  157 (1169)
T TIGR03348        81 AEIRELRARF-NEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRNCDW  157 (1169)
T ss_pred             HHHHHHHHHH-HHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcccce
Confidence            3444444433 33444444333222333457799999999999999999865 3311 110       111234556555


Q ss_pred             EEcCCeEEEEeCCCCCCcc--cchHHHHHHHHHHHHHHhc--cccccEEEEEEeCCCCCChhH---H-------HHHHHH
Q 026538          134 FKLGTKLCLVDLPGYGFAY--AKEEVKDAWEELVKEYVST--RVSLKRVCLLIDTKWGVKPRD---H-------ELISLM  199 (237)
Q Consensus       134 ~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~d~v~~vvd~~~~~~~~~---~-------~~~~~l  199 (237)
                      .. ....+++||+|..-..  ..+.-...|..++....+.  ....++||+++|..+-+....   .       .-+..+
T Consensus       158 wf-~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el  236 (1169)
T TIGR03348       158 WF-TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQEL  236 (1169)
T ss_pred             Ee-cCCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            43 4457899999943211  1122345577777654443  344899999999765332211   1       111222


Q ss_pred             H---hcCCcEEEEEecCCCC
Q 026538          200 E---RSQTKYQVVLTKTDTV  216 (237)
Q Consensus       200 ~---~~~~piilv~NK~Dl~  216 (237)
                      .   ....||++|+||||++
T Consensus       237 ~~~lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       237 REQLGARFPVYLVLTKADLL  256 (1169)
T ss_pred             HHHhCCCCCEEEEEecchhh
Confidence            2   2378999999999987

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.90  E-value=3.1e-08  Score=80.30  Aligned_cols=89  Identities=19%  Similarity=0.102  Sum_probs=58.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEEc------CCeEEEEeCCCCCCcccch-HHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKE-EVKDAWE  162 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~~------~~~~~liDTpG~~~~~~~~-~~~~~~~  162 (237)
                      +...|+++|++++|||||+|.|++.. ..........+|+.+-....      +..+.++||||+.+....+ .......
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence            44578999999999999999999982 33444455678887654432      4679999999998753322 1111111


Q ss_pred             HHHHHHHhccccccEEEEEEeCC
Q 026538          163 ELVKEYVSTRVSLKRVCLLIDTK  185 (237)
Q Consensus       163 ~~~~~~~~~~~~~d~v~~vvd~~  185 (237)
                      .+.     .. -+++++|.++..
T Consensus        86 ~l~-----~l-lss~~i~n~~~~  102 (224)
T cd01851          86 ALA-----TL-LSSVLIYNSWET  102 (224)
T ss_pred             HHH-----HH-HhCEEEEeccCc
Confidence            111     00 168888888765

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.89  E-value=3.1e-08  Score=84.44  Aligned_cols=77  Identities=18%  Similarity=0.128  Sum_probs=46.5

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +..+.|+||+|.+...  .       ....       .+|.++++++...+   .+...... ......-++|+||+|+.
T Consensus       148 g~d~viieT~Gv~qs~--~-------~i~~-------~aD~vlvv~~p~~g---d~iq~~k~-gi~E~aDIiVVNKaDl~  207 (332)
T PRK09435        148 GYDVILVETVGVGQSE--T-------AVAG-------MVDFFLLLQLPGAG---DELQGIKK-GIMELADLIVINKADGD  207 (332)
T ss_pred             CCCEEEEECCCCccch--h-------HHHH-------hCCEEEEEecCCch---HHHHHHHh-hhhhhhheEEeehhccc
Confidence            5779999999987421  1       1111       28999999863322   22222111 01123348999999998


Q ss_pred             ChHHHHHHHHHHHHHHH
Q 026538          217 FPIDVARRAMQIEEVIF  233 (237)
Q Consensus       217 ~~~~~~~~~~~l~~~l~  233 (237)
                      +..........+++.+.
T Consensus       208 ~~~~a~~~~~el~~~L~  224 (332)
T PRK09435        208 NKTAARRAAAEYRSALR  224 (332)
T ss_pred             chhHHHHHHHHHHHHHh
Confidence            76666666666666554

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.89  E-value=7.3e-09  Score=84.30  Aligned_cols=141  Identities=20%  Similarity=0.257  Sum_probs=88.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccC--CCC-----ceEEEEEEEcCCeEEEEeCCCCCCcccchHH----HHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--KPG-----LTQTINFFKLGTKLCLVDLPGYGFAYAKEEV----KDA  160 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~--~~g-----~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~----~~~  160 (237)
                      .++|+.+|.+|.|||||++.|++...-...++  .|+     .|.++.......+++++||.||++....+..    -+.
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy  121 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY  121 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence            47999999999999999999998731111111  122     2222223333567899999999986433321    111


Q ss_pred             HHHHHHHHHh------------ccccccEEEEEEeC-CCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHH
Q 026538          161 WEELVKEYVS------------TRVSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ  227 (237)
Q Consensus       161 ~~~~~~~~~~------------~~~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~  227 (237)
                      ...-...|+.            .....++++|++.. .+++...+.-.++.+.. .+.+|-|+-|+|-....++.+....
T Consensus       122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAKaDtisK~eL~~FK~k  200 (406)
T KOG3859|consen  122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAKADTISKEELKRFKIK  200 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHHhhhhhHHHHHHHHHH
Confidence            1111112221            11225677777754 46777777666666654 5788999999999999998887777


Q ss_pred             HHHHHH
Q 026538          228 IEEVIF  233 (237)
Q Consensus       228 l~~~l~  233 (237)
                      +...+.
T Consensus       201 imsEL~  206 (406)
T KOG3859|consen  201 IMSELV  206 (406)
T ss_pred             HHHHHH
Confidence            766543

>PRK00098 GTPase RsgA; Reviewed

Probab=98.88  E-value=5.4e-09  Score=88.33  Aligned_cols=57  Identities=32%  Similarity=0.506  Sum_probs=42.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCC-------CceEEEEEEEcCCeEEEEeCCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~-------g~t~~~~~~~~~~~~~liDTpG~~~  150 (237)
                      ..++++|++|+|||||+|+|++... ..++..+       .||+....+.......++||||+..
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~-~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLE-LKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcC-CCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence            4789999999999999999998742 2222222       3777777766655679999999874

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.88  E-value=4.4e-09  Score=87.34  Aligned_cols=71  Identities=27%  Similarity=0.392  Sum_probs=49.4

Q ss_pred             EEEEecCCCCchhhHHHHHhcccce--eecc----CCCCceEEEEEEEcCCeEEEEeCCCCCCc----ccchHHHHHHHH
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTS----DKPGLTQTINFFKLGTKLCLVDLPGYGFA----YAKEEVKDAWEE  163 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~--~~~~----~~~g~t~~~~~~~~~~~~~liDTpG~~~~----~~~~~~~~~~~~  163 (237)
                      ..+++|.+|||||||+|+|.+....  ..++    ....||+....+.....-.|+||||+.+-    ...+.+...|.+
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~e  245 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFPE  245 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhHH
Confidence            7789999999999999999985311  1112    23448888888887666789999998653    233444455554


Q ss_pred             H
Q 026538          164 L  164 (237)
Q Consensus       164 ~  164 (237)
                      +
T Consensus       246 f  246 (301)
T COG1162         246 F  246 (301)
T ss_pred             H
Confidence            4

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=98.88  E-value=1e-09  Score=79.62  Aligned_cols=107  Identities=18%  Similarity=0.168  Sum_probs=69.3

Q ss_pred             EEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE-------EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        96 ~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~-------~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +++|.+++|||.|+-++-...   .....--.|..+.+.       ....++.+|||+|.          +.+.+....|
T Consensus         1 mllgds~~gktcllir~kdga---fl~~~fistvgid~rnkli~~~~~kvklqiwdtagq----------erfrsvt~ay   67 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGA---FLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ----------ERFRSVTHAY   67 (192)
T ss_pred             CccccCccCceEEEEEeccCc---eecCceeeeeeeccccceeccCCcEEEEEEeeccch----------HHHhhhhHhh
Confidence            368999999999986654431   111111122222221       12456899999994          2356667777


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---CCcEEEEEecCCCCCh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP  218 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~piilv~NK~Dl~~~  218 (237)
                      ++.   +|.++++.|.....+... ..|+.++.+.   .+.+.+++||||+.++
T Consensus        68 yrd---a~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e  118 (192)
T KOG0083|consen   68 YRD---ADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE  118 (192)
T ss_pred             hcc---cceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh
Confidence            776   999999999765444333 4566666543   5678899999999653

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.85  E-value=1.6e-08  Score=80.28  Aligned_cols=123  Identities=20%  Similarity=0.250  Sum_probs=80.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .+|+++|.+|+||||+-..++.. ..+.-...+|.|.|+...+.    +.-+.+||..|..             .+++.|
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~n-y~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe-------------~fmen~   70 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFAN-YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE-------------EFMENY   70 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhh-hhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH-------------HHHHHH
Confidence            58999999999999998887765 33555667788888765443    4668899999842             233333


Q ss_pred             Hhcc-----ccccEEEEEEeCCCCCChhHHH----HHHHHHhc--CCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          169 VSTR-----VSLKRVCLLIDTKWGVKPRDHE----LISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       169 ~~~~-----~~~d~v~~vvd~~~~~~~~~~~----~~~~l~~~--~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                      +...     ...+++++|+|++..--+.|..    .++.+.+.  ...+.+.+.|+|++.....+...+.-.
T Consensus        71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~  142 (295)
T KOG3886|consen   71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRK  142 (295)
T ss_pred             HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHH
Confidence            3311     2278899999987543344433    23333332  345888999999987665544444333

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=98.84  E-value=4e-09  Score=82.60  Aligned_cols=112  Identities=15%  Similarity=0.087  Sum_probs=69.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCC----ceEEEEEE-EcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG----LTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g----~t~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ..++++||..++|||+|+..+....  ......|.    ...++... .....+.+|||+|..+-          .. ++
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~--fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY----------Dr-lR   70 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNA--FPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY----------DR-LR   70 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCc--CcccccCeEEccceEEEEecCCCEEEEeeeecCCCccc----------cc-cc
Confidence            3689999999999999998877652  11122221    11222332 22355889999997542          11 11


Q ss_pred             HHHhccccccEEEEEEeCCCCC--ChhHHHHHHHHHhc--CCcEEEEEecCCCCCh
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMERS--QTKYQVVLTKTDTVFP  218 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~  218 (237)
                      . + .-..+|+++++++...+.  ......|+..+..+  +.|+++|++|.||.+.
T Consensus        71 p-l-sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d  124 (198)
T KOG0393|consen   71 P-L-SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDD  124 (198)
T ss_pred             c-c-CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhC
Confidence            0 0 112278888777755433  33335666666665  6999999999999843

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=3.1e-08  Score=82.22  Aligned_cols=129  Identities=24%  Similarity=0.329  Sum_probs=86.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeecc--CCCCceEEE-----EEE------------------------EcCCe
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS--DKPGLTQTI-----NFF------------------------KLGTK  139 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~--~~~g~t~~~-----~~~------------------------~~~~~  139 (237)
                      ...+|.++|+-..|||||..+|.|-.. ..-+  -..|.|...     .++                        ..-..
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT-~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWT-DRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceee-echhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            346999999999999999999998530 0000  001111110     000                        00134


Q ss_pred             EEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-CChhHHHHHHHHHhcC-CcEEEEEecCCCCC
Q 026538          140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQ-TKYQVVLTKTDTVF  217 (237)
Q Consensus       140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~-~piilv~NK~Dl~~  217 (237)
                      +.++|.||+.             -++...+....--|+.++|+.++.+ .+++..+.+-.+.-.+ ..+++|-||+|+++
T Consensus        88 VSfVDaPGHe-------------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~  154 (415)
T COG5257          88 VSFVDAPGHE-------------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS  154 (415)
T ss_pred             EEEeeCCchH-------------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec
Confidence            8899999963             2344444444446999999998763 4666777666666554 46899999999999


Q ss_pred             hHHHHHHHHHHHHHHH
Q 026538          218 PIDVARRAMQIEEVIF  233 (237)
Q Consensus       218 ~~~~~~~~~~l~~~l~  233 (237)
                      .++..+..+++++.++
T Consensus       155 ~E~AlE~y~qIk~Fvk  170 (415)
T COG5257         155 RERALENYEQIKEFVK  170 (415)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9988888888887665

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.82  E-value=5.5e-08  Score=82.57  Aligned_cols=133  Identities=18%  Similarity=0.185  Sum_probs=92.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeec-------------cCCCCceEEEEEEEc--------------------
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-------------SDKPGLTQTINFFKL--------------------  136 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~-------------~~~~g~t~~~~~~~~--------------------  136 (237)
                      +....|+.+|.-+.|||||+-+|.... ....             .-..|.+.++.+.-.                    
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~-~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGR-LDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecC-CCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            455688899999999999999887542 0000             001223333322111                    


Q ss_pred             ------CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEE
Q 026538          137 ------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVL  210 (237)
Q Consensus       137 ------~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~  210 (237)
                            +.-+.++||-|+.-         .....++..+.  ...|..++++-+.++++....+.+-.+.....|+++|+
T Consensus       194 ~vv~~aDklVsfVDtvGHEp---------wLrTtirGL~g--qk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvv  262 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEP---------WLRTTIRGLLG--QKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVV  262 (527)
T ss_pred             HhhhhcccEEEEEecCCccH---------HHHHHHHHHhc--cccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEE
Confidence                  12378999999742         11112222221  23899999999999999999999988888899999999


Q ss_pred             ecCCCCChHHHHHHHHHHHHHHHh
Q 026538          211 TKTDTVFPIDVARRAMQIEEVIFY  234 (237)
Q Consensus       211 NK~Dl~~~~~~~~~~~~l~~~l~~  234 (237)
                      ||+|+.+.+..+...+++.+.++.
T Consensus       263 TK~D~~~ddr~~~v~~ei~~~Lk~  286 (527)
T COG5258         263 TKIDMVPDDRFQGVVEEISALLKR  286 (527)
T ss_pred             EecccCcHHHHHHHHHHHHHHHHH
Confidence            999999999888888888887764

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.81  E-value=1.9e-07  Score=81.98  Aligned_cols=114  Identities=18%  Similarity=0.266  Sum_probs=64.9

Q ss_pred             CEEEEecCCCCchhhHHHHHh------cccceeeccCCC---C---------ceEEEEEEE-------------------
Q 026538           93 PEIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKP---G---------LTQTINFFK-------------------  135 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~------~~~~~~~~~~~~---g---------~t~~~~~~~-------------------  135 (237)
                      ..|+++|.+||||||++..|.      |. .+..++.-+   +         .-..+.++.                   
T Consensus       101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            467899999999999998886      22 222222111   0         001111111                   


Q ss_pred             -cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCC
Q 026538          136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  214 (237)
Q Consensus       136 -~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D  214 (237)
                       .+..+.|+||||....  ....   ..+ +..+... ..++.+++|+|+..+  .......+.+...-.+.-+|+||.|
T Consensus       180 ~~~~DvViIDTaGr~~~--d~~l---m~E-l~~i~~~-~~p~e~lLVlda~~G--q~a~~~a~~F~~~~~~~g~IlTKlD  250 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQ--EDSL---FEE-MLQVAEA-IQPDNIIFVMDGSIG--QAAEAQAKAFKDSVDVGSVIITKLD  250 (429)
T ss_pred             hCCCCEEEEECCCCCcc--hHHH---HHH-HHHHhhh-cCCcEEEEEeccccC--hhHHHHHHHHHhccCCcEEEEECcc
Confidence             1467999999996431  1111   112 2222222 236889999998755  2334444555444356788999999


Q ss_pred             CC
Q 026538          215 TV  216 (237)
Q Consensus       215 l~  216 (237)
                      ..
T Consensus       251 ~~  252 (429)
T TIGR01425       251 GH  252 (429)
T ss_pred             CC
Confidence            75

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.81  E-value=8.8e-09  Score=82.78  Aligned_cols=90  Identities=19%  Similarity=0.236  Sum_probs=63.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .+..+|+++|.|++|||||+..+++..  +.......||..+   .+...+..+.++|.||+.+..++..      .--+
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgk------GRGR  131 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGK------GRGR  131 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCC------CCCc
Confidence            456799999999999999999999874  4445555666554   2444588899999999876433221      1122


Q ss_pred             HHHhccccccEEEEEEeCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWG  187 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~  187 (237)
                      +.+.....+|+|++|+|+...
T Consensus       132 QviavArtaDlilMvLDatk~  152 (364)
T KOG1486|consen  132 QVIAVARTADLILMVLDATKS  152 (364)
T ss_pred             eEEEEeecccEEEEEecCCcc
Confidence            334444559999999998754

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.77  E-value=2.3e-08  Score=84.10  Aligned_cols=58  Identities=29%  Similarity=0.394  Sum_probs=42.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhccccee--ecc----CCCCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVV--RTS----DKPGLTQTINFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~--~~~----~~~g~t~~~~~~~~~~~~~liDTpG~~~  150 (237)
                      ..++++|++|+|||||+|+|++.....  .++    ...++|+....+.......++||||+.+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~  225 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE  225 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence            578999999999999999999874211  111    2334777777776654568999999954

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR00092 GTP-binding protein YchF

Probab=98.76  E-value=1.4e-08  Score=87.32  Aligned_cols=86  Identities=21%  Similarity=0.134  Sum_probs=59.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----c----------------CCeEEEEeCCCCCCcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----L----------------GTKLCLVDLPGYGFAY  152 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~----------------~~~~~liDTpG~~~~~  152 (237)
                      .++.++|.||+|||||+|+|++.. .....+.|.+|.+.....    .                ...+.++|.||+....
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~-~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLL-GNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCC-ccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            588999999999999999999984 326677788776543211    1                2358999999986532


Q ss_pred             cchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~  185 (237)
                      +...      .+-..++.....+|++++|+|+.
T Consensus        82 s~g~------Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        82 SKGE------GLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             hccc------CcchHHHHHHHhCCEEEEEEeCC
Confidence            2211      12233444444599999999975

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=1.7e-07  Score=78.45  Aligned_cols=131  Identities=18%  Similarity=0.276  Sum_probs=92.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc--------------ceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYA  153 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~--------------~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~  153 (237)
                      ...+|.-+|....|||||--+++.-.              +-++....+|.|...   .+......+--+|+||+.    
T Consensus        53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA----  128 (449)
T KOG0460|consen   53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA----  128 (449)
T ss_pred             CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH----
Confidence            34588999999999999998887421              011222234555543   333335667889999974    


Q ss_pred             chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHHH-HHHHHHH
Q 026538          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARR-AMQIEEV  231 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~~-~~~l~~~  231 (237)
                               ++++..+.....-|+.++|+.+.++..++..+.+-..++.+++ +++.+||.|+++..+..++ .-++++.
T Consensus       129 ---------DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~REl  199 (449)
T KOG0460|consen  129 ---------DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIREL  199 (449)
T ss_pred             ---------HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHH
Confidence                     3455556555568999999999999999998888777777776 7778999999965555444 4466666


Q ss_pred             HHh
Q 026538          232 IFY  234 (237)
Q Consensus       232 l~~  234 (237)
                      +..
T Consensus       200 Lse  202 (449)
T KOG0460|consen  200 LSE  202 (449)
T ss_pred             HHH
Confidence            653

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.73  E-value=4.6e-07  Score=76.71  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=21.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ....|+|+|++|+|||||++.|..
T Consensus        33 ~~~~i~i~G~~G~GKttl~~~l~~   56 (300)
T TIGR00750        33 NAHRVGITGTPGAGKSTLLEALGM   56 (300)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456889999999999999999775

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.73  E-value=6.1e-08  Score=77.62  Aligned_cols=29  Identities=17%  Similarity=0.366  Sum_probs=24.8

Q ss_pred             CCCCCCCEEEEecCCCCchhhHHHHHhcc
Q 026538           87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        87 ~~~~~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +...+.+.|+++|++|+|||||++.++..
T Consensus        17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             hhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            34457889999999999999999999864

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.70  E-value=7.8e-08  Score=73.75  Aligned_cols=114  Identities=21%  Similarity=0.260  Sum_probs=62.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc---ceeeccCCCC--------------ceEEEE---------------E-------
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG--------------LTQTIN---------------F-------  133 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~---~~~~~~~~~g--------------~t~~~~---------------~-------  133 (237)
                      |.++++|..|+|||||++.++...   ......+..|              ....+.               .       
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~   80 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL   80 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence            468899999999999999988652   1111111111              000000               0       


Q ss_pred             --EEcCCeEEEEeCCCCCCcccchHHHHHHHHH-HHHHHhccccccEEEEEEeCCCCCChh--HHHHHHHHHhcCCcEEE
Q 026538          134 --FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERSQTKYQV  208 (237)
Q Consensus       134 --~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~~~~piil  208 (237)
                        ........++||||+.++.   .+   ...+ ....+.....++.+++++|+.......  ...+..++...   -++
T Consensus        81 ~~~~~~~d~I~IEt~G~~~p~---~~---~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~i  151 (158)
T cd03112          81 DAGKIAFDRIVIETTGLADPG---PV---AQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRI  151 (158)
T ss_pred             HhccCCCCEEEEECCCcCCHH---HH---HHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEE
Confidence              0124568999999987632   11   1111 112233344589999999986422111  12233444433   377


Q ss_pred             EEecCCC
Q 026538          209 VLTKTDT  215 (237)
Q Consensus       209 v~NK~Dl  215 (237)
                      |+||+|+
T Consensus       152 vlnk~dl  158 (158)
T cd03112         152 LLNKTDL  158 (158)
T ss_pred             EEecccC
Confidence            9999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.70  E-value=9.5e-09  Score=87.40  Aligned_cols=59  Identities=34%  Similarity=0.525  Sum_probs=54.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~  150 (237)
                      ..+++.|+|.||+||||+||+|... ....+++.||.|+.+....++..+.|+|.||+.-
T Consensus       251 ~sIrvGViG~PNVGKSSvINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~  309 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVP  309 (435)
T ss_pred             cceEeeeecCCCCChhHHHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceee
Confidence            4579999999999999999999998 6688999999999999999999999999999743

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=2.1e-07  Score=89.98  Aligned_cols=127  Identities=20%  Similarity=0.235  Sum_probs=76.7

Q ss_pred             CCCCCEEEEecCCCCchhhHHHHHhcccce-----eeccCCCCceEEEEEEEcCCeEEEEeCCCCC-Ccc-cchHHHHHH
Q 026538           89 APDLPEIAFAGRSNVGKSSMLNALTRQWGV-----VRTSDKPGLTQTINFFKLGTKLCLVDLPGYG-FAY-AKEEVKDAW  161 (237)
Q Consensus        89 ~~~~~~i~lvG~~~~GKSTLin~L~~~~~~-----~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~-~~~-~~~~~~~~~  161 (237)
                      ..+.|..+|+|++|+||||++..---.-.+     ......+| |+++.+. .+..-.+|||+|-. ... ..+.-...|
T Consensus       122 lyeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdww-f~deaVlIDtaGry~~q~s~~~~~~~~W  199 (1188)
T COG3523         122 LYELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDWW-FTDEAVLIDTAGRYITQDSADEVDRAEW  199 (1188)
T ss_pred             hhcCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCcc-cccceEEEcCCcceecccCcchhhHHHH
Confidence            367899999999999999998543221000     11122333 6666633 36668999999932 221 223345566


Q ss_pred             HHHHHHH--HhccccccEEEEEEeCCCCCChhHH---HHH-------HHHH---hcCCcEEEEEecCCCCC
Q 026538          162 EELVKEY--VSTRVSLKRVCLLIDTKWGVKPRDH---ELI-------SLME---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       162 ~~~~~~~--~~~~~~~d~v~~vvd~~~~~~~~~~---~~~-------~~l~---~~~~piilv~NK~Dl~~  217 (237)
                      ..++...  ++.....|+|++.+|.++-.+....   ...       +.+.   ....||++++||.|+++
T Consensus       200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence            6654322  2333448999999997653332221   122       2222   23689999999999985

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=3.8e-08  Score=84.25  Aligned_cols=128  Identities=19%  Similarity=0.277  Sum_probs=89.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceee----------c------cCCCCceEE---EEEEEcCCeEEEEeCCCCCCcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR----------T------SDKPGLTQT---INFFKLGTKLCLVDLPGYGFAY  152 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~----------~------~~~~g~t~~---~~~~~~~~~~~liDTpG~~~~~  152 (237)
                      ..+|.++....+||||...+++--.+...          +      ....|.|..   +.+.+.|.++++|||||+.+- 
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf-  115 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF-  115 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE-
Confidence            45899999999999999888763211000          1      112344433   355667999999999998652 


Q ss_pred             cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                       .-+++    ..++-       .|+++.|+|++.++..+...+.++....++|-+..+||+|.... ..+..++.+++.+
T Consensus       116 -~leve----rclrv-------ldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a-nfe~avdsi~ekl  182 (753)
T KOG0464|consen  116 -RLEVE----RCLRV-------LDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA-NFENAVDSIEEKL  182 (753)
T ss_pred             -EEEHH----HHHHH-------hcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh-hhhhHHHHHHHHh
Confidence             22222    22222       79999999999999999888888888899999999999998643 3444555666555


Q ss_pred             H
Q 026538          233 F  233 (237)
Q Consensus       233 ~  233 (237)
                      +
T Consensus       183 ~  183 (753)
T KOG0464|consen  183 G  183 (753)
T ss_pred             C
Confidence            4

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=1.4e-07  Score=79.90  Aligned_cols=128  Identities=23%  Similarity=0.325  Sum_probs=87.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc-----ceeeccC-------CCCceEEEEEEEc------------------------
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD-------KPGLTQTINFFKL------------------------  136 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~-------~~g~t~~~~~~~~------------------------  136 (237)
                      .+++++|.-.+|||||+..|+..+     +-+...-       ..|.|..+.....                        
T Consensus       168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S  247 (591)
T KOG1143|consen  168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS  247 (591)
T ss_pred             EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence            589999999999999999988642     0011000       1122222211110                        


Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh--ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS--TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  214 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D  214 (237)
                      ..-++++|.+|+...             .+..+.  +.-..+..++|+.+..++.....+.+..+...++|+.++++|+|
T Consensus       248 SKlvTfiDLAGh~kY-------------~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~D  314 (591)
T KOG1143|consen  248 SKLVTFIDLAGHAKY-------------QKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMD  314 (591)
T ss_pred             cceEEEeecccchhh-------------heeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeec
Confidence            234899999997431             110000  01126889999999989888888999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHH
Q 026538          215 TVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       215 l~~~~~~~~~~~~l~~~l~  233 (237)
                      +.++..+.+..+++...+.
T Consensus       315 l~~~~~~~~tv~~l~nll~  333 (591)
T KOG1143|consen  315 LVDRQGLKKTVKDLSNLLA  333 (591)
T ss_pred             cccchhHHHHHHHHHHHHh
Confidence            9999888888887777654

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=1.6e-07  Score=69.18  Aligned_cols=112  Identities=21%  Similarity=0.210  Sum_probs=71.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      ..+++++|-.|+||||++-.+--.+ ....-+.+|.... +..+.+.++.+||.-|...      ++.    +.+.|+..
T Consensus        18 e~rililgldGaGkttIlyrlqvge-vvttkPtigfnve-~v~yKNLk~~vwdLggqtS------irP----yWRcYy~d   85 (182)
T KOG0072|consen   18 EMRILILGLDGAGKTTILYRLQVGE-VVTTKPTIGFNVE-TVPYKNLKFQVWDLGGQTS------IRP----YWRCYYAD   85 (182)
T ss_pred             ceEEEEeeccCCCeeEEEEEcccCc-ccccCCCCCcCcc-ccccccccceeeEccCccc------ccH----HHHHHhcc
Confidence            3589999999999999886665442 2222233332222 1222577899999998543      333    44556655


Q ss_pred             cccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          172 RVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                         .|.++||+|+++.  +.....++...+.+   .+..+++++||.|....
T Consensus        86 ---t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~  134 (182)
T KOG0072|consen   86 ---TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA  134 (182)
T ss_pred             ---cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence               8999999998753  33333444444432   35678899999998643

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.60  E-value=3.1e-07  Score=71.81  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=62.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhc----ccceeeccCCCC-------------c-eEEEE-------------------EEE
Q 026538           93 PEIAFAGRSNVGKSSMLNALTR----QWGVVRTSDKPG-------------L-TQTIN-------------------FFK  135 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~----~~~~~~~~~~~g-------------~-t~~~~-------------------~~~  135 (237)
                      |.+++.|..|||||||++.++.    ..+.....+..|             . ...+.                   ...
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~   80 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE   80 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence            5789999999999999999993    112222222112             0 01110                   000


Q ss_pred             c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC--ChhHHHHHHHHHhcCCcEEEEEe
Q 026538          136 L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMERSQTKYQVVLT  211 (237)
Q Consensus       136 ~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~~~~~piilv~N  211 (237)
                      .  +....++.+.|..++..-  +   +.   ...+...-..+.++.|+|+..-.  ......+..++..   --++|+|
T Consensus        81 ~~~~~d~IiIE~sG~a~p~~l--~---~~---~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---ADvIvln  149 (178)
T PF02492_consen   81 YEERPDRIIIETSGLADPAPL--I---LQ---DPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF---ADVIVLN  149 (178)
T ss_dssp             CHGC-SEEEEEEECSSGGGGH--H---HH---SHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----SEEEEE
T ss_pred             cCCCcCEEEECCccccccchh--h---hc---cccccccccccceeEEeccccccccccchhhhhhcchh---cCEEEEe
Confidence            1  357899999998764322  0   01   11111122278899999985421  1111233333433   3488999


Q ss_pred             cCCCCChH
Q 026538          212 KTDTVFPI  219 (237)
Q Consensus       212 K~Dl~~~~  219 (237)
                      |+|+.+.+
T Consensus       150 K~D~~~~~  157 (178)
T PF02492_consen  150 KIDLVSDE  157 (178)
T ss_dssp             -GGGHHHH
T ss_pred             ccccCChh
Confidence            99998766

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=98.59  E-value=1.6e-08  Score=85.99  Aligned_cols=61  Identities=31%  Similarity=0.572  Sum_probs=53.5

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA  151 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~  151 (237)
                      ...+.|.|+|+||+||||+||+|... .+..+.++||-|+-.++..+-..+.|||+||+..+
T Consensus       305 kkqISVGfiGYPNvGKSSiINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyp  365 (572)
T KOG2423|consen  305 KKQISVGFIGYPNVGKSSIINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYP  365 (572)
T ss_pred             ccceeeeeecCCCCchHHHHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCccCC
Confidence            35578999999999999999999999 78899999999987777667778999999997654

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.57  E-value=8.4e-07  Score=75.42  Aligned_cols=127  Identities=15%  Similarity=0.164  Sum_probs=73.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccc---ee-eccCC-----C--C----ceEEEE-------E----------------E
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWG---VV-RTSDK-----P--G----LTQTIN-------F----------------F  134 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~---~~-~~~~~-----~--g----~t~~~~-------~----------------~  134 (237)
                      |..++.|.-|||||||+|.|+....   ++ ++...     -  .    +..++.       .                .
T Consensus         2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~   81 (323)
T COG0523           2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR   81 (323)
T ss_pred             CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence            6788999999999999999986531   11 11110     0  0    000000       0                0


Q ss_pred             EcCCeEEEEeCCCCCCcccchHHHHHHHHHHH-HHHhccccccEEEEEEeCCCCCChhH---HHHHHHHHhcCCcEEEEE
Q 026538          135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK-EYVSTRVSLKRVCLLIDTKWGVKPRD---HELISLMERSQTKYQVVL  210 (237)
Q Consensus       135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~v~~vvd~~~~~~~~~---~~~~~~l~~~~~piilv~  210 (237)
                      ..+....+|.|.|+.++...  +    ..+.. ..+...-..|.++-|+|+.+......   ..+..++..   -=++|+
T Consensus        82 ~~~~D~ivIEtTGlA~P~pv--~----~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~ivl  152 (323)
T COG0523          82 RDRPDRLVIETTGLADPAPV--I----QTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADVIVL  152 (323)
T ss_pred             cCCCCEEEEeCCCCCCCHHH--H----HHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---CcEEEE
Confidence            12456899999999875211  1    11111 22223334789999999986433332   233344443   348999


Q ss_pred             ecCCCCChHHHHHHHHHH
Q 026538          211 TKTDTVFPIDVARRAMQI  228 (237)
Q Consensus       211 NK~Dl~~~~~~~~~~~~l  228 (237)
                      ||.|+++++++....+.+
T Consensus       153 NK~Dlv~~~~l~~l~~~l  170 (323)
T COG0523         153 NKTDLVDAEELEALEARL  170 (323)
T ss_pred             ecccCCCHHHHHHHHHHH
Confidence            999999988644444333

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=98.53  E-value=9.9e-07  Score=75.86  Aligned_cols=132  Identities=17%  Similarity=0.225  Sum_probs=74.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc---ceeeccCCCC-----------c------eEEEEEE----------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-----------L------TQTINFF----------------  134 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~---~~~~~~~~~g-----------~------t~~~~~~----------------  134 (237)
                      ..|..++.|.-|+|||||+|.++...   +++...+..|           .      ...+...                
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~   82 (341)
T TIGR02475         3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT   82 (341)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence            45788999999999999999998541   1111111111           0      0011000                


Q ss_pred             -------EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChh----------------
Q 026538          135 -------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR----------------  191 (237)
Q Consensus       135 -------~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~----------------  191 (237)
                             .......++.|.|+.++.   .+...+   ....+...-..+.|+.|+|+.......                
T Consensus        83 l~~l~~~~~~~d~IvIEtsG~a~P~---~i~~~~---~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~  156 (341)
T TIGR02475        83 MTKLLARRQRPDHILIETSGLALPK---PLVQAF---QWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADD  156 (341)
T ss_pred             HHHHHhccCCCCEEEEeCCCCCCHH---HHHHHh---cCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccc
Confidence                   113568899999987631   121111   111122222378899999987432100                


Q ss_pred             --------HHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538          192 --------DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV  231 (237)
Q Consensus       192 --------~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~  231 (237)
                              ...+..++.   .--++|+||+|+++++++....+.+++.
T Consensus       157 ~~~~~~~~~~~~~~Qi~---~AD~IvlnK~Dl~~~~~l~~~~~~l~~~  201 (341)
T TIGR02475       157 NLDHETPLEELFEDQLA---CADLVILNKADLLDAAGLARVRAEIAAE  201 (341)
T ss_pred             cccccchHHHHHHHHHH---hCCEEEEeccccCCHHHHHHHHHHHHHh
Confidence                    011223333   3358899999999988877776666553

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=1.7e-07  Score=83.57  Aligned_cols=130  Identities=19%  Similarity=0.216  Sum_probs=88.0

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccce-eeccC---------------CCCceEEE---EEEEcCCeEEEEeCCCCCC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSD---------------KPGLTQTI---NFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~-~~~~~---------------~~g~t~~~---~~~~~~~~~~liDTpG~~~  150 (237)
                      ....+|.+.-+..+||||+-++++-..+. .....               ..|+|-..   .+.+...++++|||||+.+
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            35568999999999999999887743210 11111               11222211   2233478899999999865


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                      -  .-+++++           +...|+.++|+|+..+++.+...+.+++++.++|.+..+||+|.+...- .+.++.+..
T Consensus       117 F--T~EVeRA-----------LrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~-~~~l~~i~~  182 (721)
T KOG0465|consen  117 F--TFEVERA-----------LRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASP-FRTLNQIRT  182 (721)
T ss_pred             E--EEEehhh-----------hhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCCh-HHHHHHHHh
Confidence            1  1122221           1228999999999999999999999999999999999999999985543 344455554


Q ss_pred             HHH
Q 026538          231 VIF  233 (237)
Q Consensus       231 ~l~  233 (237)
                      .++
T Consensus       183 kl~  185 (721)
T KOG0465|consen  183 KLN  185 (721)
T ss_pred             hcC
Confidence            443

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.51  E-value=7.3e-07  Score=72.62  Aligned_cols=104  Identities=22%  Similarity=0.363  Sum_probs=56.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc-----cee-----eccCCCC------------ceEE--EEEEE-----------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV-----RTSDKPG------------LTQT--INFFK-----------  135 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~-----~~~~~~g------------~t~~--~~~~~-----------  135 (237)
                      +.++|.|.|+||+|||||+++|....     .++     +.++..|            ...+  +-+..           
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            34699999999999999999987431     111     1222222            0000  11111           


Q ss_pred             ------------cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC--CChhHHHHHHHHHh
Q 026538          136 ------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER  201 (237)
Q Consensus       136 ------------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~  201 (237)
                                  .|+.+.|+.|.|.+..    ++     ++..       .+|.+++|+-+..+  ++-...-+++    
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQs----E~-----~I~~-------~aD~~v~v~~Pg~GD~iQ~~KaGimE----  167 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQS----EV-----DIAD-------MADTVVLVLVPGLGDEIQAIKAGIME----  167 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTH----HH-----HHHT-------TSSEEEEEEESSTCCCCCTB-TTHHH----
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCcc----HH-----HHHH-------hcCeEEEEecCCCccHHHHHhhhhhh----
Confidence                        2678999999998741    11     1111       28999999865433  3333333333    


Q ss_pred             cCCcEEEEEecCCCC
Q 026538          202 SQTKYQVVLTKTDTV  216 (237)
Q Consensus       202 ~~~piilv~NK~Dl~  216 (237)
                        +.-++|+||+|+.
T Consensus       168 --iaDi~vVNKaD~~  180 (266)
T PF03308_consen  168 --IADIFVVNKADRP  180 (266)
T ss_dssp             --H-SEEEEE--SHH
T ss_pred             --hccEEEEeCCChH
Confidence              3458999999953

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.50  E-value=1e-06  Score=78.08  Aligned_cols=76  Identities=26%  Similarity=0.333  Sum_probs=50.1

Q ss_pred             eEEEEeCCCCCCcccc---hHHHHHHHHHHHHHHhccccccEEEEEE-eCCCC-CChhHHHHHHHHHhcCCcEEEEEecC
Q 026538          139 KLCLVDLPGYGFAYAK---EEVKDAWEELVKEYVSTRVSLKRVCLLI-DTKWG-VKPRDHELISLMERSQTKYQVVLTKT  213 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~v~~vv-d~~~~-~~~~~~~~~~~l~~~~~piilv~NK~  213 (237)
                      ...++|.||+..+...   .+..+....+...|..+   .++|++++ |.+-. -......+...+...+...|+|+||.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~N---PNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQN---PNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcC---CCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence            4789999998654222   22234455666676666   88888887 34321 12233456666777889999999999


Q ss_pred             CCCC
Q 026538          214 DTVF  217 (237)
Q Consensus       214 Dl~~  217 (237)
                      |+..
T Consensus       490 DlAE  493 (980)
T KOG0447|consen  490 DLAE  493 (980)
T ss_pred             chhh
Confidence            9863

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=3.2e-07  Score=70.68  Aligned_cols=115  Identities=12%  Similarity=0.065  Sum_probs=69.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE--cC-CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LG-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~--~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++++++|..|.||||+.++.+..+..-.+....|.........  .| .++..|||+|...          +..+...|
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk----------~gglrdgy   79 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEK----------KGGLRDGY   79 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeeccccee----------eccccccc
Confidence            57899999999999999999876632222333333333322222  23 7899999999543          11222233


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCChH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~~~  219 (237)
                      +-.   ..+.++++|....++... ..+.+.+.+  .++|+++.+||.|...+.
T Consensus        80 yI~---~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~  130 (216)
T KOG0096|consen   80 YIQ---GQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK  130 (216)
T ss_pred             EEe---cceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccc
Confidence            322   566777788665444333 122222222  258999999999976543

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=98.47  E-value=1.8e-06  Score=71.23  Aligned_cols=136  Identities=18%  Similarity=0.169  Sum_probs=79.4

Q ss_pred             CCCCCCCEEEEecCCCCchhhHHHHHhccc---ceeeccCCCC-------------------------------ceE-EE
Q 026538           87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-------------------------------LTQ-TI  131 (237)
Q Consensus        87 ~~~~~~~~i~lvG~~~~GKSTLin~L~~~~---~~~~~~~~~g-------------------------------~t~-~~  131 (237)
                      .+..+.|.-.+.|+-|+|||||+|.++...   +++..-+.-|                               +|. +.
T Consensus        52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~  131 (391)
T KOG2743|consen   52 SLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDN  131 (391)
T ss_pred             CCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecch
Confidence            344567888999999999999999988542   2221111111                               010 00


Q ss_pred             --------EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH--------HHH
Q 026538          132 --------NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--------HEL  195 (237)
Q Consensus       132 --------~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~--------~~~  195 (237)
                              ..........++.|.|+..+..-..  -   -+....+.+.-..|+|+-|+|+.+.....+        .+.
T Consensus       132 gvraie~lvqkkGkfD~IllETTGlAnPaPia~--~---Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA  206 (391)
T KOG2743|consen  132 GVRAIENLVQKKGKFDHILLETTGLANPAPIAS--M---FWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEA  206 (391)
T ss_pred             HHHHHHHHHhcCCCcceEEEeccCCCCcHHHHH--H---HhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHH
Confidence                    0001134578999999987532221  1   122333444445899999999876321111        122


Q ss_pred             HHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       196 ~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                      .+++.   ..--+++||.|++..+++....+.++.
T Consensus       207 ~~QiA---~AD~II~NKtDli~~e~~~~l~q~I~~  238 (391)
T KOG2743|consen  207 TRQIA---LADRIIMNKTDLVSEEEVKKLRQRIRS  238 (391)
T ss_pred             HHHHh---hhheeeeccccccCHHHHHHHHHHHHH
Confidence            22222   233577899999999888777776654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.44  E-value=8.3e-06  Score=69.47  Aligned_cols=123  Identities=16%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc-----ceeecc-CCC--C---------ceEEEEEE-------------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-DKP--G---------LTQTINFF-------------------  134 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~-~~~--g---------~t~~~~~~-------------------  134 (237)
                      ....++++|++|+||||++..|.+..     .+.... +..  +         ....+.+.                   
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            34578999999999999998887531     111111 110  0         00011111                   


Q ss_pred             -EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh-ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEec
Q 026538          135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS-TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK  212 (237)
Q Consensus       135 -~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK  212 (237)
                       ..+..+.|+||||....  .....+....+.+..-. .....+.+++|+|+..+.  ............-.+.-+|+||
T Consensus       193 ~~~~~D~ViIDTaGr~~~--~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~~~giIlTK  268 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHN--KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVGLTGIILTK  268 (318)
T ss_pred             HhCCCCEEEEeCCCCCcC--CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCCCCEEEEEC
Confidence             12467999999996542  11111222222221100 012267889999988542  2222222222222356789999


Q ss_pred             CCCCC
Q 026538          213 TDTVF  217 (237)
Q Consensus       213 ~Dl~~  217 (237)
                      .|...
T Consensus       269 lD~t~  273 (318)
T PRK10416        269 LDGTA  273 (318)
T ss_pred             CCCCC
Confidence            99653

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.44  E-value=6.2e-06  Score=70.28  Aligned_cols=120  Identities=16%  Similarity=0.174  Sum_probs=65.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc---ceeeccCCCC-----------ceEEEEEE-------E--------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-----------LTQTINFF-------K--------------  135 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~---~~~~~~~~~g-----------~t~~~~~~-------~--------------  135 (237)
                      ..|..++.|.-|||||||+|.++...   +++...+..|           ....+...       .              
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~   82 (318)
T PRK11537          3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD   82 (318)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence            46889999999999999999998542   1111111111           00011000       0              


Q ss_pred             ------cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH--HHHHHHHHhcCCcEE
Q 026538          136 ------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQ  207 (237)
Q Consensus       136 ------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~~~pii  207 (237)
                            ......+|.|.|..++.   .+-+.+.  ....+...-..+.++.|+|+.......+  ..+..++..   --+
T Consensus        83 ~~~~~~~~~d~IvIEttG~a~p~---~i~~~~~--~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD~  154 (318)
T PRK11537         83 NLDKGNIQFDRLVIECTGMADPG---PIIQTFF--SHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADR  154 (318)
T ss_pred             HHhccCCCCCEEEEECCCccCHH---HHHHHHh--cChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CCE
Confidence                  02567899999987631   1111110  0111222223688999999875322211  122233333   348


Q ss_pred             EEEecCCCCCh
Q 026538          208 VVLTKTDTVFP  218 (237)
Q Consensus       208 lv~NK~Dl~~~  218 (237)
                      +|+||+|+.++
T Consensus       155 IvlnK~Dl~~~  165 (318)
T PRK11537        155 ILLTKTDVAGE  165 (318)
T ss_pred             EEEeccccCCH
Confidence            89999999875

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.42  E-value=2.4e-06  Score=67.83  Aligned_cols=114  Identities=25%  Similarity=0.378  Sum_probs=60.3

Q ss_pred             EEEEecCCCCchhhHHHHHhccc-----ceeecc-C--CCCc---------eEEEEEEE--------------------c
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-D--KPGL---------TQTINFFK--------------------L  136 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~-~--~~g~---------t~~~~~~~--------------------~  136 (237)
                      .|+++|++||||||.+-.|....     .+..++ +  ..|.         ...+.++.                    .
T Consensus         3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~   82 (196)
T PF00448_consen    3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK   82 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence            57899999999999998776431     111111 1  1110         00111111                    1


Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHH-HHHHHHHhcCCcEEEEEecCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERSQTKYQVVLTKTDT  215 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~~~~piilv~NK~Dl  215 (237)
                      +..+.+|||||....  .....+.+..+..    .. ..+-+++|++++.+  ..+. .+.......+ +--+++||.|.
T Consensus        83 ~~D~vlIDT~Gr~~~--d~~~~~el~~~~~----~~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-~~~lIlTKlDe  152 (196)
T PF00448_consen   83 GYDLVLIDTAGRSPR--DEELLEELKKLLE----AL-NPDEVHLVLSATMG--QEDLEQALAFYEAFG-IDGLILTKLDE  152 (196)
T ss_dssp             TSSEEEEEE-SSSST--HHHHHHHHHHHHH----HH-SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-TCEEEEESTTS
T ss_pred             CCCEEEEecCCcchh--hHHHHHHHHHHhh----hc-CCccceEEEecccC--hHHHHHHHHHhhccc-CceEEEEeecC
Confidence            356999999997542  1111122222222    22 26889999998754  2232 3333333333 34667999998


Q ss_pred             CC
Q 026538          216 VF  217 (237)
Q Consensus       216 ~~  217 (237)
                      ..
T Consensus       153 t~  154 (196)
T PF00448_consen  153 TA  154 (196)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.41  E-value=1.5e-05  Score=66.44  Aligned_cols=77  Identities=18%  Similarity=0.217  Sum_probs=41.3

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH-hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV-STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT  215 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl  215 (237)
                      +..+.|+||||....  .....+....+.+... .....+|.+++|+|+..+  ...........+.-.+.-+|+||+|.
T Consensus       154 ~~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~~~g~IlTKlDe  229 (272)
T TIGR00064       154 NIDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVGLTGIILTKLDG  229 (272)
T ss_pred             CCCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCCCCEEEEEccCC
Confidence            467999999997542  1111122222222111 011237889999998743  33333223322222356889999998


Q ss_pred             CC
Q 026538          216 VF  217 (237)
Q Consensus       216 ~~  217 (237)
                      ..
T Consensus       230 ~~  231 (272)
T TIGR00064       230 TA  231 (272)
T ss_pred             CC
Confidence            54

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=9.6e-07  Score=77.46  Aligned_cols=126  Identities=19%  Similarity=0.261  Sum_probs=81.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC---------------ceEEEE---EE-E---------------c
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---------------LTQTIN---FF-K---------------L  136 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g---------------~t~~~~---~~-~---------------~  136 (237)
                      +..++.++.....|||||..+|..+.++ +.+...|               .|....   .+ .               .
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kAgI-is~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKAGI-ISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhhce-eeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            5568889999999999999999876432 1112222               221111   11 0               1


Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +.-+++||.||+.+-             ..+....+...|+.++|+|.-.++.-+...++++.-...+.-++|+||+|..
T Consensus        97 ~FLiNLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA  163 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA  163 (842)
T ss_pred             ceeEEeccCCCcccc-------------hhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence            455899999998651             1122223333799999999988888788888877666667778899999963


Q ss_pred             ------ChHHHHHHHHHHHH
Q 026538          217 ------FPIDVARRAMQIEE  230 (237)
Q Consensus       217 ------~~~~~~~~~~~l~~  230 (237)
                            +.+++.+..+++-+
T Consensus       164 lLELq~~~EeLyqtf~R~VE  183 (842)
T KOG0469|consen  164 LLELQLSQEELYQTFQRIVE  183 (842)
T ss_pred             HHhhcCCHHHHHHHHHHHHh
Confidence                  44455444444433

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.37  E-value=1.7e-06  Score=64.99  Aligned_cols=56  Identities=16%  Similarity=0.112  Sum_probs=43.2

Q ss_pred             ccccEEEEEEeCCCCCChhHHHHHHHHHhc--CCcEEEEEecCCCCChHHHHHHHHHH
Q 026538          173 VSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQI  228 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~~~~~~~~l  228 (237)
                      ..+|++++|+|+..+....+..+.+.+...  ++|+++|+||+|+.++.+.....+.+
T Consensus        10 ~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~   67 (141)
T cd01857          10 ERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYF   67 (141)
T ss_pred             hhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHH
Confidence            339999999999887777766777777665  79999999999998766554444433

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.36  E-value=3.8e-06  Score=72.73  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.++|+|++|+||||++..|...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458899999999999999998754

>PTZ00099 rab6; Provisional

Probab=98.35  E-value=1.5e-06  Score=67.79  Aligned_cols=68  Identities=18%  Similarity=0.135  Sum_probs=44.5

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEec
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTK  212 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK  212 (237)
                      ...+.||||||...          +..+...|+..   +|++++|+|.+...+... ..++..+..   .+.|+++|+||
T Consensus        28 ~v~l~iwDt~G~e~----------~~~~~~~~~~~---ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK   94 (176)
T PTZ00099         28 PVRLQLWDTAGQER----------FRSLIPSYIRD---SAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK   94 (176)
T ss_pred             EEEEEEEECCChHH----------hhhccHHHhCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence            45689999999532          23344455543   999999999876422222 234443322   35789999999


Q ss_pred             CCCCC
Q 026538          213 TDTVF  217 (237)
Q Consensus       213 ~Dl~~  217 (237)
                      +|+..
T Consensus        95 ~DL~~   99 (176)
T PTZ00099         95 TDLGD   99 (176)
T ss_pred             ccccc
Confidence            99863

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.33  E-value=6.8e-06  Score=68.08  Aligned_cols=24  Identities=33%  Similarity=0.551  Sum_probs=20.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      +..+|.|.|.||+|||||+..|..
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~   73 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGR   73 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHH
Confidence            345899999999999999999874

>PRK14974 cell division protein FtsY; Provisional

Probab=98.28  E-value=8.5e-06  Score=69.77  Aligned_cols=72  Identities=21%  Similarity=0.212  Sum_probs=39.7

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +..+.|+||||....  ....-.....+.    ... ..|.+++|+|+..+  .......+.+...-..--+|+||.|..
T Consensus       222 ~~DvVLIDTaGr~~~--~~~lm~eL~~i~----~~~-~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD~~  292 (336)
T PRK14974        222 GIDVVLIDTAGRMHT--DANLMDELKKIV----RVT-KPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVDAD  292 (336)
T ss_pred             CCCEEEEECCCccCC--cHHHHHHHHHHH----Hhh-CCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeecCC
Confidence            456999999996531  111111122221    111 26889999998644  222333333332223467889999985


Q ss_pred             C
Q 026538          217 F  217 (237)
Q Consensus       217 ~  217 (237)
                      .
T Consensus       293 ~  293 (336)
T PRK14974        293 A  293 (336)
T ss_pred             C
Confidence            4

>cd01858 NGP_1 NGP-1

Probab=98.27  E-value=2.7e-06  Score=64.96  Aligned_cols=57  Identities=19%  Similarity=0.154  Sum_probs=43.0

Q ss_pred             ccccEEEEEEeCCCCCChhHHHHHHHHHhc--CCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          173 VSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                      ..+|++++|+|++.++...+..+.+.+...  ++|+++|+||+|+.++++.......+.
T Consensus         7 ~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~   65 (157)
T cd01858           7 DSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILS   65 (157)
T ss_pred             hhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHh
Confidence            349999999999887666666677766643  489999999999987766555555444

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.24  E-value=5.4e-06  Score=70.52  Aligned_cols=84  Identities=18%  Similarity=0.126  Sum_probs=58.8

Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      -+++||.+|+...         ++..+  |--+....|...+++-++.++--...+.+.......+|+++|++|+|..+.
T Consensus       220 viTFIDLAGHEkY---------LKTTv--FGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPA  288 (641)
T KOG0463|consen  220 VITFIDLAGHEKY---------LKTTV--FGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPA  288 (641)
T ss_pred             eEEEEeccchhhh---------hheee--eccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcH
Confidence            3889999997421         01000  111222368888888888777666677777777778999999999999988


Q ss_pred             HHHHHHHHHHHHHHH
Q 026538          219 IDVARRAMQIEEVIF  233 (237)
Q Consensus       219 ~~~~~~~~~l~~~l~  233 (237)
                      .-+++....+.+.++
T Consensus       289 NiLqEtmKll~rllk  303 (641)
T KOG0463|consen  289 NILQETMKLLTRLLK  303 (641)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            877777766666554

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.22  E-value=2.1e-05  Score=69.73  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=19.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ...|+++|.+|+||||++-.|..
T Consensus        95 p~vI~lvG~~GsGKTTtaakLA~  117 (437)
T PRK00771         95 PQTIMLVGLQGSGKTTTAAKLAR  117 (437)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45788999999999999977753

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.20  E-value=5.6e-05  Score=63.33  Aligned_cols=27  Identities=22%  Similarity=0.371  Sum_probs=24.0

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +...+|+++|..++||||||..|-|.+
T Consensus        50 psgk~VlvlGdn~sGKtsLi~klqg~e   76 (473)
T KOG3905|consen   50 PSGKNVLVLGDNGSGKTSLISKLQGSE   76 (473)
T ss_pred             CCCCeEEEEccCCCchhHHHHHhhccc
Confidence            456799999999999999999998874

>cd00066 G-alpha G protein alpha subunit

Probab=98.19  E-value=4.2e-06  Score=71.39  Aligned_cols=67  Identities=15%  Similarity=0.194  Sum_probs=42.0

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC--------ChhH---HHHHHHHHh----
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRD---HELISLMER----  201 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--------~~~~---~~~~~~l~~----  201 (237)
                      +..+.+||++|...      .+..|..+    +.   .+++|+||+|.++.-        ...-   ...++.+..    
T Consensus       160 ~~~~~~~DvgGq~~------~R~kW~~~----f~---~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~  226 (317)
T cd00066         160 NLKFRMFDVGGQRS------ERKKWIHC----FE---DVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF  226 (317)
T ss_pred             ceEEEEECCCCCcc------cchhHHHH----hC---CCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence            56688999999542      33445443    32   299999999977421        0111   222333322    


Q ss_pred             cCCcEEEEEecCCCC
Q 026538          202 SQTKYQVVLTKTDTV  216 (237)
Q Consensus       202 ~~~piilv~NK~Dl~  216 (237)
                      .+.|+++++||.|+.
T Consensus       227 ~~~pill~~NK~D~f  241 (317)
T cd00066         227 ANTSIILFLNKKDLF  241 (317)
T ss_pred             cCCCEEEEccChHHH
Confidence            368999999999975

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.17  E-value=3.4e-05  Score=66.96  Aligned_cols=117  Identities=24%  Similarity=0.324  Sum_probs=62.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc-----ceeeccC--CC-C------c---eEEEEEE--E---------------cC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD--KP-G------L---TQTINFF--K---------------LG  137 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~--~~-g------~---t~~~~~~--~---------------~~  137 (237)
                      ...|+|+|++||||||++..|...-     .+..++.  .. +      +   ...+.+.  .               .+
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            3588999999999999999987421     1111111  00 0      0   0001111  0               13


Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      ..+.||||||.... ....+.    ++ ..++.. ...+.+++|+|+...- .....+++.+... ..--+|+||.|...
T Consensus       321 ~DvVLIDTaGRs~k-d~~lm~----EL-~~~lk~-~~PdevlLVLsATtk~-~d~~~i~~~F~~~-~idglI~TKLDET~  391 (436)
T PRK11889        321 VDYILIDTAGKNYR-ASETVE----EM-IETMGQ-VEPDYICLTLSASMKS-KDMIEIITNFKDI-HIDGIVFTKFDETA  391 (436)
T ss_pred             CCEEEEeCccccCc-CHHHHH----HH-HHHHhh-cCCCeEEEEECCccCh-HHHHHHHHHhcCC-CCCEEEEEcccCCC
Confidence            57999999996431 111122    21 222221 1257788899875321 2224444444442 23567889999753

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.17  E-value=9.1e-06  Score=67.85  Aligned_cols=28  Identities=14%  Similarity=0.221  Sum_probs=23.8

Q ss_pred             CCCCCCEEEEecCCCCchhhHHHHHhcc
Q 026538           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...+...|.|+|.+|+|||||++.+++.
T Consensus       100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~  127 (290)
T PRK10463        100 AARKQLVLNLVSSPGSGKTTLLTETLMR  127 (290)
T ss_pred             HhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3356789999999999999999888764

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.17  E-value=1.6e-05  Score=60.28  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=18.0

Q ss_pred             EEEecCCCCchhhHHHHHhc
Q 026538           95 IAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~  114 (237)
                      +.++|.+|+||||++..+..
T Consensus         2 i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           2 IGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999988874

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.16  E-value=1.7e-05  Score=69.79  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=21.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..-+|+++|++|+||||++..|.+.
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999988764

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.14  E-value=1.6e-05  Score=71.46  Aligned_cols=116  Identities=22%  Similarity=0.255  Sum_probs=61.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc-------cceeecc-CC-C-C---------ceEEEEEEE--------------cC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ-------WGVVRTS-DK-P-G---------LTQTINFFK--------------LG  137 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~-------~~~~~~~-~~-~-g---------~t~~~~~~~--------------~~  137 (237)
                      ....|+|+|++|+||||++..|...       ..+..++ +. . +         ....+.+..              .+
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~  428 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD  428 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence            3458999999999999999888752       1122111 11 0 0         000011111              14


Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      ..+.||||||..... .. ..+....+ ..    .. ....++|+++....... ..+++.+... .+.-+|+||+|..
T Consensus       429 ~DLVLIDTaG~s~~D-~~-l~eeL~~L-~a----a~-~~a~lLVLpAtss~~Dl-~eii~~f~~~-~~~gvILTKlDEt  497 (559)
T PRK12727        429 YKLVLIDTAGMGQRD-RA-LAAQLNWL-RA----AR-QVTSLLVLPANAHFSDL-DEVVRRFAHA-KPQGVVLTKLDET  497 (559)
T ss_pred             CCEEEecCCCcchhh-HH-HHHHHHHH-HH----hh-cCCcEEEEECCCChhHH-HHHHHHHHhh-CCeEEEEecCcCc
Confidence            679999999975311 11 11111111 11    11 23467778776432222 2344444433 4677999999974

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=3.2e-05  Score=66.18  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=27.0

Q ss_pred             hhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhc
Q 026538           71 FRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      +.....++......-+..+...-.|+++|-.|+||||.+-.|..
T Consensus        80 f~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~  123 (483)
T KOG0780|consen   80 FDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAY  123 (483)
T ss_pred             HHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHH
Confidence            44444444333333333333444678999999999999877763

>cd01859 MJ1464 MJ1464

Probab=98.12  E-value=1.7e-05  Score=60.43  Aligned_cols=58  Identities=22%  Similarity=0.263  Sum_probs=41.7

Q ss_pred             HHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHH
Q 026538          161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~  221 (237)
                      |.++.+.....   +|++++|+|++.+....+..+...+...+.|+++|+||+|+.+....
T Consensus         2 ~~~~~~~i~~~---aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~   59 (156)
T cd01859           2 WKRLVRRIIKE---SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVL   59 (156)
T ss_pred             HHHHHHHHHhh---CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHH
Confidence            34444444443   89999999998766555556666666668999999999999765443

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.12  E-value=8.4e-06  Score=63.35  Aligned_cols=56  Identities=16%  Similarity=0.109  Sum_probs=45.0

Q ss_pred             cEEEEEEeCCCCCChhHHHHHHH--HHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538          176 KRVCLLIDTKWGVKPRDHELISL--MERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV  231 (237)
Q Consensus       176 d~v~~vvd~~~~~~~~~~~~~~~--l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~  231 (237)
                      |+|++|+|+..++...+..+.+.  +...+.|+++|+||+|+.+++.+..+.+.+++.
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~   58 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRRE   58 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence            78999999988777777777776  445578999999999999888777777766554

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.10  E-value=5.5e-05  Score=58.60  Aligned_cols=71  Identities=24%  Similarity=0.195  Sum_probs=39.0

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHH-HhcCCcEEEEEecCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTKTDT  215 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l-~~~~~piilv~NK~Dl  215 (237)
                      +..+.++||||.... ....+    .. +..+.. ....+.+++|+|+...  ....+....+ ...+ ..-+|+||+|.
T Consensus        82 ~~d~viiDt~g~~~~-~~~~l----~~-l~~l~~-~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-~~~viltk~D~  151 (173)
T cd03115          82 NFDVVIVDTAGRLQI-DENLM----EE-LKKIKR-VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-ITGVILTKLDG  151 (173)
T ss_pred             CCCEEEEECcccchh-hHHHH----HH-HHHHHh-hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-CCEEEEECCcC
Confidence            456899999996421 11111    11 122211 1237999999998533  2222333333 3334 46788899997


Q ss_pred             CC
Q 026538          216 VF  217 (237)
Q Consensus       216 ~~  217 (237)
                      ..
T Consensus       152 ~~  153 (173)
T cd03115         152 DA  153 (173)
T ss_pred             CC
Confidence            64

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK10867 signal recognition particle protein; Provisional

Probab=98.10  E-value=5.8e-05  Score=66.77  Aligned_cols=71  Identities=23%  Similarity=0.275  Sum_probs=36.6

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +..+.|+||||....  .+..-.....+..    . -..+.+++|+|+..+  .......+.+...-...-+|+||.|..
T Consensus       183 ~~DvVIIDTaGrl~~--d~~lm~eL~~i~~----~-v~p~evllVlda~~g--q~av~~a~~F~~~~~i~giIlTKlD~~  253 (433)
T PRK10867        183 GYDVVIVDTAGRLHI--DEELMDELKAIKA----A-VNPDEILLVVDAMTG--QDAVNTAKAFNEALGLTGVILTKLDGD  253 (433)
T ss_pred             CCCEEEEeCCCCccc--CHHHHHHHHHHHH----h-hCCCeEEEEEecccH--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence            456999999996431  1111111122211    1 126778999997532  222333333332111245778999854

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.09  E-value=3.9e-06  Score=68.04  Aligned_cols=89  Identities=22%  Similarity=0.251  Sum_probs=61.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..+|.++|.|++||||++..|.+..  ..+....++|-..   .....+.++.+.|.||+.+......      .--++.
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~--s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgk------grg~qv  130 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTF--SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK------GRGKQV  130 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCC--CccccccceeEEEecceEeccccceeeecCcchhcccccCC------CCccEE
Confidence            3489999999999999999999984  5566666655433   2334588899999999866421110      111233


Q ss_pred             HhccccccEEEEEEeCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGV  188 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~  188 (237)
                      +.....|+++++|+|+..++
T Consensus       131 iavartcnli~~vld~~kp~  150 (358)
T KOG1487|consen  131 IAVARTCNLIFIVLDVLKPL  150 (358)
T ss_pred             EEEeecccEEEEEeeccCcc
Confidence            34445599999999986543

>PRK01889 GTPase RsgA; Reviewed

Probab=98.04  E-value=5.8e-06  Score=71.60  Aligned_cols=57  Identities=30%  Similarity=0.332  Sum_probs=38.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeecc-------CCCCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTINFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~-------~~~g~t~~~~~~~~~~~~~liDTpG~~~  150 (237)
                      -+++++|.+|+|||||+|.|++... ...+       ....+|.............++||||+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~  259 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRE  259 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhh
Confidence            4899999999999999999998632 1111       1122444444444444457889999854

>TIGR00959 ffh signal recognition particle protein

Probab=98.04  E-value=9.2e-05  Score=65.45  Aligned_cols=71  Identities=21%  Similarity=0.231  Sum_probs=37.0

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +..+.|+||||....  .+..-.....+.    .. -..+.+++|+|+..+  .........+...-...-+|+||.|..
T Consensus       182 ~~DvVIIDTaGr~~~--d~~l~~eL~~i~----~~-~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~giIlTKlD~~  252 (428)
T TIGR00959       182 GFDVVIVDTAGRLQI--DEELMEELAAIK----EI-LNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTGVVLTKLDGD  252 (428)
T ss_pred             CCCEEEEeCCCcccc--CHHHHHHHHHHH----Hh-hCCceEEEEEeccch--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence            456999999996431  111111122221    11 127889999998633  222333333332112345678898854

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=6.1e-05  Score=66.01  Aligned_cols=118  Identities=19%  Similarity=0.308  Sum_probs=59.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc------ceeecc-CC--CC---------ceEEEEEEE-------------cCCeEE
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW------GVVRTS-DK--PG---------LTQTINFFK-------------LGTKLC  141 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~------~~~~~~-~~--~g---------~t~~~~~~~-------------~~~~~~  141 (237)
                      ..++++|++||||||++..|....      .+..++ +.  .+         ....+.+..             .+..+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            468899999999999998887531      111111 11  00         000001110             256789


Q ss_pred             EEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          142 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       142 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +|||||+.... ...+ +.+..+.... . .....-+++|+|+..+. ....++.+..... -+--+|+||.|-.
T Consensus       304 LIDTaGr~~rd-~~~l-~eL~~~~~~~-~-~~~~~e~~LVLsAt~~~-~~~~~~~~~f~~~-~~~glIlTKLDEt  372 (432)
T PRK12724        304 LIDTAGYSHRN-LEQL-ERMQSFYSCF-G-EKDSVENLLVLSSTSSY-HHTLTVLKAYESL-NYRRILLTKLDEA  372 (432)
T ss_pred             EEeCCCCCccC-HHHH-HHHHHHHHhh-c-CCCCCeEEEEEeCCCCH-HHHHHHHHHhcCC-CCCEEEEEcccCC
Confidence            99999975321 1111 2222222211 0 01134678899987542 1223333333222 2346778888864

>TIGR00101 ureG urease accessory protein UreG

Probab=97.99  E-value=8.6e-05  Score=59.08  Aligned_cols=23  Identities=39%  Similarity=0.614  Sum_probs=20.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+|+++|++|+|||||++.+++.
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~   24 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRA   24 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999988864

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=9.8e-05  Score=64.47  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=19.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ...|+++|++|+||||.+..|..
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~  196 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAA  196 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999987764

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=3.9e-05  Score=66.36  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      +...++++|++||||||++..|..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            455789999999999999988874

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.97  E-value=9e-05  Score=55.46  Aligned_cols=111  Identities=14%  Similarity=0.173  Sum_probs=60.1

Q ss_pred             EEecCCCCchhhHHHHHhccc-----ceeecc-CCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           96 AFAGRSNVGKSSMLNALTRQW-----GVVRTS-DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        96 ~lvG~~~~GKSTLin~L~~~~-----~~~~~~-~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      +.-|..|+||||+--.+....     ....+. +..+.       ...+.+.++|||+...    ..    ....+..  
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~-------~~~yd~VIiD~p~~~~----~~----~~~~l~~--   66 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA-------NLDYDYIIIDTGAGIS----DN----VLDFFLA--   66 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC-------CCCCCEEEEECCCCCC----HH----HHHHHHh--
Confidence            345789999999976655331     111111 11111       1126799999998532    10    1112222  


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhc--CCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                           +|.++++++.+..--......++.+...  ..++.+|+|+++.  ..+..+..+.+++
T Consensus        67 -----aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~--~~~~~~~~~~~~~  122 (139)
T cd02038          67 -----ADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES--PKEGKKVFKRLSN  122 (139)
T ss_pred             -----CCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC--HHHHHHHHHHHHH
Confidence                 8999999987632111223444455332  4578899999973  3334444444444

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.97  E-value=3.2e-05  Score=61.01  Aligned_cols=77  Identities=21%  Similarity=0.173  Sum_probs=42.7

Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-----HHHHHHHHhcCCcEEEEEec
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-----HELISLMERSQTKYQVVLTK  212 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-----~~~~~~l~~~~~piilv~NK  212 (237)
                      ..+.++|.||..+-.+.-.+   ...+++.... ..---+++|++|+.--+....     ...+..+-...+|-|=|++|
T Consensus        98 ddylifDcPGQIELytH~pV---m~~iv~hl~~-~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsK  173 (273)
T KOG1534|consen   98 DDYLIFDCPGQIELYTHLPV---MPQIVEHLKQ-WNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSK  173 (273)
T ss_pred             CCEEEEeCCCeeEEeecChh---HHHHHHHHhc-ccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhH
Confidence            45899999997653322222   1222222111 111245778888753221111     23334444568999999999


Q ss_pred             CCCCCh
Q 026538          213 TDTVFP  218 (237)
Q Consensus       213 ~Dl~~~  218 (237)
                      +|++..
T Consensus       174 MDLlk~  179 (273)
T KOG1534|consen  174 MDLLKD  179 (273)
T ss_pred             HHHhhh
Confidence            999865

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.95  E-value=3.2e-05  Score=58.90  Aligned_cols=53  Identities=17%  Similarity=0.192  Sum_probs=38.4

Q ss_pred             cEEEEEEeCCCCCChhHHHHH-HHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538          176 KRVCLLIDTKWGVKPRDHELI-SLMERSQTKYQVVLTKTDTVFPIDVARRAMQI  228 (237)
Q Consensus       176 d~v~~vvd~~~~~~~~~~~~~-~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l  228 (237)
                      |++++|+|+..+.......+. ..+...++|+++|+||+|+.+.++....+..+
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~   54 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYL   54 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHH
Confidence            689999999876655555444 45556689999999999998766554444334

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.94  E-value=6e-05  Score=65.30  Aligned_cols=117  Identities=21%  Similarity=0.250  Sum_probs=61.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeecc-CCCCceEEE--------------------EEEE------------cCC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTI--------------------NFFK------------LGT  138 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~-~~~g~t~~~--------------------~~~~------------~~~  138 (237)
                      ...|++||++||||||.+-.|.......... ...-.|.|.                    ....            ...
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            4589999999999999987776542100000 001111110                    0000            146


Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      .+.||||.|.... +...+     .-+..|+... ...-+++|+++... .....+++..+...++ --+++||.|...
T Consensus       283 d~ILVDTaGrs~~-D~~~i-----~el~~~~~~~-~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i-~~~I~TKlDET~  352 (407)
T COG1419         283 DVILVDTAGRSQY-DKEKI-----EELKELIDVS-HSIEVYLVLSATTK-YEDLKEIIKQFSLFPI-DGLIFTKLDETT  352 (407)
T ss_pred             CEEEEeCCCCCcc-CHHHH-----HHHHHHHhcc-ccceEEEEEecCcc-hHHHHHHHHHhccCCc-ceeEEEcccccC
Confidence            7999999996531 11111     2233444433 23456677776522 1222445555544322 246789999753

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.93  E-value=6.3e-05  Score=70.46  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.|+|+|++|+||||++..|.+.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhh
Confidence            47899999999999999988864

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.93  E-value=0.0001  Score=65.30  Aligned_cols=117  Identities=19%  Similarity=0.168  Sum_probs=60.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc-------cceeeccCCCCc--------e----EEEEEE--------------EcCC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ-------WGVVRTSDKPGL--------T----QTINFF--------------KLGT  138 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~-------~~~~~~~~~~g~--------t----~~~~~~--------------~~~~  138 (237)
                      ...++|+|++||||||++..|...       ..+..++.-+..        +    ..+.+.              ..+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~  300 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC  300 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence            348899999999999988776542       112211111100        0    000000              0146


Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      .+.||||||.... ... ....+..++.    ......-+++|+++...  ..+ .++++.+...+ +--+|+||+|...
T Consensus       301 DlVlIDt~G~~~~-d~~-~~~~L~~ll~----~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~~-~~~vI~TKlDet~  371 (424)
T PRK05703        301 DVILIDTAGRSQR-DKR-LIEELKALIE----FSGEPIDVYLVLSATTK--YEDLKDIYKHFSRLP-LDGLIFTKLDETS  371 (424)
T ss_pred             CEEEEeCCCCCCC-CHH-HHHHHHHHHh----ccCCCCeEEEEEECCCC--HHHHHHHHHHhCCCC-CCEEEEecccccc
Confidence            7999999997531 111 1112222222    11123567788887633  222 33444444332 2368899999753

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=97.91  E-value=7.5e-05  Score=55.98  Aligned_cols=112  Identities=13%  Similarity=0.119  Sum_probs=67.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCC---ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g---~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..+|.++|++..|||||+-...+...-.......|   ..+.+.+......+.+||.-|..+          +...+.  
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~----------~~n~lP--   87 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQRE----------FINMLP--   87 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHh----------hhccCc--
Confidence            36899999999999999988887632111111122   122222333356688999999532          111211  


Q ss_pred             HhccccccEEEEEEeCCCCCC-hhHHHHHHHHHhcCCc--EEEEEecCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQTK--YQVVLTKTDTV  216 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~-~~~~~~~~~l~~~~~p--iilv~NK~Dl~  216 (237)
                       -...++-+|+|++|-..+.+ ..-.+|.++.+..+.-  -++|++|-|+.
T Consensus        88 -iac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~f  137 (205)
T KOG1673|consen   88 -IACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLF  137 (205)
T ss_pred             -eeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence             11223677899999765422 2235677777665422  46789999975

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.91  E-value=0.00011  Score=61.99  Aligned_cols=120  Identities=22%  Similarity=0.290  Sum_probs=61.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc-----c-------------------------eeeccCCCCceEEEEEE-------
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW-----G-------------------------VVRTSDKPGLTQTINFF-------  134 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~-----~-------------------------~~~~~~~~g~t~~~~~~-------  134 (237)
                      ...|+++|-.|+||||.|-.|....     .                         +..++...|.......+       
T Consensus       139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Ak  218 (340)
T COG0552         139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAK  218 (340)
T ss_pred             cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHH
Confidence            4577899999999999998877421     0                         01111111111110000       


Q ss_pred             EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcccc-ccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecC
Q 026538          135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS-LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT  213 (237)
Q Consensus       135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~  213 (237)
                      ..+..+.|+||+|-..+  ...+......+.+-.-..... .+-+++++|+.-+  .......+.+...-.---+++||+
T Consensus       219 ar~~DvvliDTAGRLhn--k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~eav~l~GiIlTKl  294 (340)
T COG0552         219 ARGIDVVLIDTAGRLHN--KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEAVGLDGIILTKL  294 (340)
T ss_pred             HcCCCEEEEeCcccccC--chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHhcCCceEEEEec
Confidence            02677999999995432  222333334433332222221 3458888898765  222333333333211234677888


Q ss_pred             CC
Q 026538          214 DT  215 (237)
Q Consensus       214 Dl  215 (237)
                      |-
T Consensus       295 Dg  296 (340)
T COG0552         295 DG  296 (340)
T ss_pred             cc
Confidence            84

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.91  E-value=5.1e-05  Score=63.51  Aligned_cols=55  Identities=15%  Similarity=0.119  Sum_probs=39.9

Q ss_pred             cccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538          172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI  228 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l  228 (237)
                      ...+|+|++|+|+..+....+..+.+.+.  +.|+++|+||+|+.++.+.....+.+
T Consensus        19 l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~~~~~~   73 (276)
T TIGR03596        19 LKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYF   73 (276)
T ss_pred             HhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHHHHHHH
Confidence            33499999999998777666666666553  68999999999998665444443333

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.84  E-value=0.0005  Score=60.00  Aligned_cols=44  Identities=11%  Similarity=0.262  Sum_probs=26.4

Q ss_pred             hhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhc
Q 026538           71 FRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ..+....+......-.......-.|+++|-.|+||||..-.|..
T Consensus        79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~  122 (451)
T COG0541          79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK  122 (451)
T ss_pred             HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH
Confidence            44445555532222222222334778999999999999876653

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=4.4e-05  Score=63.43  Aligned_cols=130  Identities=21%  Similarity=0.276  Sum_probs=79.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceee-------------------------ccCCCCceEEEEE------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------------------TSDKPGLTQTINF------------  133 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-------------------------~~~~~g~t~~~~~------------  133 (237)
                      ..++|.-+|....||||++.++.|-+.+-.                         ..+.|++.+....            
T Consensus        37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g  116 (466)
T KOG0466|consen   37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG  116 (466)
T ss_pred             eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence            357999999999999999999997531100                         0111211111100            


Q ss_pred             ----EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCC-CCChhHHHHHHHHHhcC-CcEE
Q 026538          134 ----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQ-TKYQ  207 (237)
Q Consensus       134 ----~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~~-~pii  207 (237)
                          +..-..+.++|.||+.-             ++...+....-.|++++++-++. ..+++..+.+..+.-.. ..++
T Consensus       117 ~~~~~klvRHVSfVDCPGHDi-------------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhii  183 (466)
T KOG0466|consen  117 CEGKMKLVRHVSFVDCPGHDI-------------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHII  183 (466)
T ss_pred             CCCceEEEEEEEeccCCchHH-------------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEE
Confidence                00012378999999731             22333333333588888887654 34455555554444332 5689


Q ss_pred             EEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          208 VVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       208 lv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      ++-||+|+..+++..+..+++.+.++
T Consensus       184 ilQNKiDli~e~~A~eq~e~I~kFi~  209 (466)
T KOG0466|consen  184 ILQNKIDLIKESQALEQHEQIQKFIQ  209 (466)
T ss_pred             EEechhhhhhHHHHHHHHHHHHHHHh
Confidence            99999999988888777777777654

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.82  E-value=0.00051  Score=61.48  Aligned_cols=26  Identities=15%  Similarity=0.235  Sum_probs=22.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ....|+|+|..++|||||+.+|.+.+
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e   49 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE   49 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC
Confidence            44699999999999999999997663

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.82  E-value=0.00046  Score=57.43  Aligned_cols=118  Identities=22%  Similarity=0.297  Sum_probs=62.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc-----ceeeccC--CC-C---------ceEEEEEEE-----------------c
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD--KP-G---------LTQTINFFK-----------------L  136 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~--~~-g---------~t~~~~~~~-----------------~  136 (237)
                      ...+++++|++|+||||++..+....     ....++.  .+ +         ...++.+..                 .
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            44699999999999999998876531     1111111  00 0         000111111                 1


Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +..+.++||||.... ....+++ +..+.    ... ..+.+++|+|+.... ....++++.+... .+--+++||.|..
T Consensus       154 ~~D~ViIDt~Gr~~~-~~~~l~e-l~~~~----~~~-~~~~~~LVl~a~~~~-~d~~~~~~~f~~~-~~~~~I~TKlDet  224 (270)
T PRK06731        154 RVDYILIDTAGKNYR-ASETVEE-MIETM----GQV-EPDYICLTLSASMKS-KDMIEIITNFKDI-HIDGIVFTKFDET  224 (270)
T ss_pred             CCCEEEEECCCCCcC-CHHHHHH-HHHHH----hhh-CCCeEEEEEcCccCH-HHHHHHHHHhCCC-CCCEEEEEeecCC
Confidence            467999999996531 1111221 22222    111 256789999976321 2223444444432 3346788999975


Q ss_pred             C
Q 026538          217 F  217 (237)
Q Consensus       217 ~  217 (237)
                      .
T Consensus       225 ~  225 (270)
T PRK06731        225 A  225 (270)
T ss_pred             C
Confidence            3

>cd01856 YlqF YlqF

Probab=97.79  E-value=0.0001  Score=57.08  Aligned_cols=48  Identities=19%  Similarity=0.178  Sum_probs=35.2

Q ss_pred             cccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHH
Q 026538          172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~  221 (237)
                      ...+|++++|+|++.+....+..++..+.  +.|+++|+||+|+.++.+.
T Consensus        17 i~~aD~il~v~D~~~~~~~~~~~i~~~~~--~k~~ilVlNK~Dl~~~~~~   64 (171)
T cd01856          17 LKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADPKKT   64 (171)
T ss_pred             HhhCCEEEEEeeccCccCcCChhhHhHhc--CCCEEEEEehhhcCChHHH
Confidence            34499999999998766555555555442  5799999999999765443

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.76  E-value=0.00017  Score=58.02  Aligned_cols=44  Identities=20%  Similarity=0.256  Sum_probs=29.7

Q ss_pred             ccccEEEEEEeCCCCCChhHHHHHHHHHhcC-CcEEEEEecCCCC
Q 026538          173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTV  216 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~piilv~NK~Dl~  216 (237)
                      +.+|.++.|+|.+..--.....+-+.....+ .++.+|+||+|--
T Consensus       154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~  198 (255)
T COG3640         154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE  198 (255)
T ss_pred             cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence            3489999999987432222233334444567 8999999999954

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=97.76  E-value=5.1e-05  Score=67.91  Aligned_cols=113  Identities=17%  Similarity=0.138  Sum_probs=62.8

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceee---ccCCCCceEEEEEEEc-CCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~---~~~~~g~t~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ...+.+.++|+.++|||.|+++++|+ ....   .+..+..+........ ...+.+-|.+-. ..           .+.
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr-~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~-----------~~l  489 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGR-SMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQ-----------DFL  489 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhcc-ccccccccCCCCceeeeeeeeccccceEEEeecCcc-cc-----------ccc
Confidence            45678899999999999999999997 2222   1111222222222221 223444444422 10           000


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhHHH-HHHH-HHhcCCcEEEEEecCCCCCh
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISL-MERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~-~~~~-l~~~~~piilv~NK~Dl~~~  218 (237)
                      .   .....||++++++|++++-...-.. +.+. ......|+++|.+|+|+.+.
T Consensus       490 ~---~ke~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~  541 (625)
T KOG1707|consen  490 T---SKEAACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEV  541 (625)
T ss_pred             c---CccceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchh
Confidence            0   0002299999999998543322211 1111 11247999999999998643

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.73  E-value=0.00037  Score=62.45  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...++|+|++||||||++..|.+.
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~  279 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAAR  279 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHH
Confidence            347899999999999999988853

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.70  E-value=0.00069  Score=51.43  Aligned_cols=24  Identities=25%  Similarity=0.497  Sum_probs=21.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+|.+.|+||+||||++..+...
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~   28 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEK   28 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHH
Confidence            469999999999999999888753

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.66  E-value=0.00015  Score=52.39  Aligned_cols=23  Identities=22%  Similarity=0.185  Sum_probs=20.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+|+++|..|+|||+|+.++...
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~   23 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQF   23 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcC
Confidence            37899999999999999998655

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.66  E-value=2.9e-05  Score=71.97  Aligned_cols=75  Identities=20%  Similarity=0.358  Sum_probs=43.2

Q ss_pred             eEEEEeCCCCCCc---ccchHHHHHHHHHHHHHHhccccccEEEEEEeCC-CCC-ChhHHHHHHHHHhcCCcEEEEEecC
Q 026538          139 KLCLVDLPGYGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-WGV-KPRDHELISLMERSQTKYQVVLTKT  213 (237)
Q Consensus       139 ~~~liDTpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~-~~~-~~~~~~~~~~l~~~~~piilv~NK~  213 (237)
                      +++++|+||+...   .....+......++..|+..   .+.+++.+... ..+ +.....+.+.....+...+.|++|.
T Consensus       133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~---~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~  209 (657)
T KOG0446|consen  133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEK---PNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKF  209 (657)
T ss_pred             hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccc---cchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhH
Confidence            4899999998653   34455677777888887765   55555555432 111 1222333333333345566666666


Q ss_pred             CCC
Q 026538          214 DTV  216 (237)
Q Consensus       214 Dl~  216 (237)
                      |+.
T Consensus       210 Dlm  212 (657)
T KOG0446|consen  210 DFM  212 (657)
T ss_pred             Hhh
Confidence            654

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.65  E-value=9.5e-05  Score=63.60  Aligned_cols=119  Identities=18%  Similarity=0.230  Sum_probs=69.4

Q ss_pred             CCCCCEEEEecCCCCchhhHHHHHhcccce-----------------------------eeccCCCCceEEEE---EEEc
Q 026538           89 APDLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTIN---FFKL  136 (237)
Q Consensus        89 ~~~~~~i~lvG~~~~GKSTLin~L~~~~~~-----------------------------~~~~~~~g~t~~~~---~~~~  136 (237)
                      +....+++|+|...+||||+-..|+...+.                             ..-....|.|..+.   +...
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            345679999999999999998776642100                             00011122333332   2223


Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-----CCh--hHHHHHHHHHhcC-CcEEE
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----VKP--RDHELISLMERSQ-TKYQV  208 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-----~~~--~~~~~~~~l~~~~-~piil  208 (237)
                      ...++++|+||+-.             ++..++.....+|+.++|+.+..+     +..  +..+.....+..+ ...|+
T Consensus       156 ~~~ftiLDApGHk~-------------fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv  222 (501)
T KOG0459|consen  156 NKRFTILDAPGHKS-------------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIV  222 (501)
T ss_pred             ceeEEeeccCcccc-------------cchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEE
Confidence            56799999999742             344455555558888888876432     111  1122222222223 46889


Q ss_pred             EEecCCCCChHH
Q 026538          209 VLTKTDTVFPID  220 (237)
Q Consensus       209 v~NK~Dl~~~~~  220 (237)
                      ++||+|-.....
T Consensus       223 ~vNKMddPtvnW  234 (501)
T KOG0459|consen  223 LINKMDDPTVNW  234 (501)
T ss_pred             EEEeccCCccCc
Confidence            999999765433

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.65  E-value=0.00017  Score=61.95  Aligned_cols=63  Identities=17%  Similarity=0.050  Sum_probs=51.1

Q ss_pred             ccccccEEEEEEeCCCCCChhHHHHHHHHHh-c-CCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMER-S-QTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-~-~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      ..+.+|+|+.|+|+.+++.....++-+++.. . +...|+|+||+|+++.+.++.++..++..+.
T Consensus       143 vve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~p  207 (435)
T KOG2484|consen  143 VVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGP  207 (435)
T ss_pred             HHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCC
Confidence            3344899999999999887777666666642 2 4889999999999999999999998887654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.64  E-value=0.00024  Score=59.77  Aligned_cols=53  Identities=11%  Similarity=0.117  Sum_probs=38.6

Q ss_pred             cccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHH
Q 026538          172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM  226 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~  226 (237)
                      ...+|+|++|+|+..++...+..+.+.+.  +.|+++|+||+|+.+........+
T Consensus        22 l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~   74 (287)
T PRK09563         22 LKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIE   74 (287)
T ss_pred             hhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHH
Confidence            33499999999998777666655555543  689999999999976644433333

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.56  E-value=0.001  Score=48.49  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.6

Q ss_pred             EEEecCCCCchhhHHHHHhcc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~  115 (237)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999887

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.53  E-value=0.00061  Score=58.32  Aligned_cols=71  Identities=18%  Similarity=0.204  Sum_probs=44.2

Q ss_pred             EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC--CChhH---------HHHHHHHHh--
Q 026538          135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRD---------HELISLMER--  201 (237)
Q Consensus       135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~--~~~~~---------~~~~~~l~~--  201 (237)
                      ..+.++.++|.+|...      -+..|.....       ++++|+||+..+..  ...++         ..+++.+..  
T Consensus       192 ~k~~~f~~~DvGGQRs------eRrKWihcFe-------~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~  258 (354)
T KOG0082|consen  192 IKGLKFRMFDVGGQRS------ERKKWIHCFE-------DVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK  258 (354)
T ss_pred             eCCCceEEEeCCCcHH------HhhhHHHhhc-------CCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence            3467799999999532      2334444322       38999999986641  11111         233344433  


Q ss_pred             --cCCcEEEEEecCCCCCh
Q 026538          202 --SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       202 --~~~piilv~NK~Dl~~~  218 (237)
                        .+.++++.+||.|+..+
T Consensus       259 ~F~~tsiiLFLNK~DLFeE  277 (354)
T KOG0082|consen  259 WFANTSIILFLNKKDLFEE  277 (354)
T ss_pred             ccccCcEEEEeecHHHHHH
Confidence              26889999999999643

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.52  E-value=6e-05  Score=61.11  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      =.|+++|++|||||||+|.+.|-.
T Consensus        30 EfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999999864

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=97.52  E-value=2.6e-06  Score=65.56  Aligned_cols=114  Identities=14%  Similarity=0.183  Sum_probs=66.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ...+++++|.-|+||||++.+.+....-...-..-|..........    -.++.|||.+|..          .+..+.+
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQe----------rfg~mtr   93 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQE----------RFGNMTR   93 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhh----------hhcceEE
Confidence            4578999999999999999887765210000011111111111111    2357899999943          1233444


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-------cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~piilv~NK~Dl~~  217 (237)
                      -|++.   +.+.++|+|.+...+.+. ..+.+.+..       ..+|+++..||||+-.
T Consensus        94 Vyyke---a~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~  149 (229)
T KOG4423|consen   94 VYYKE---AHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK  149 (229)
T ss_pred             EEecC---CcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh
Confidence            44444   888899999876554433 233333221       2467899999999853

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.51  E-value=0.00019  Score=57.57  Aligned_cols=78  Identities=17%  Similarity=0.182  Sum_probs=39.1

Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-----HHHHHHHHhcCCcEEEEEec
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-----HELISLMERSQTKYQVVLTK  212 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-----~~~~~~l~~~~~piilv~NK  212 (237)
                      ....++|.||..+-.....   ....+++ ++....---.++-++|+...-.+..     .-.+..+.....|-+=|+.|
T Consensus        97 ~~Y~lFDcPGQVELft~h~---~l~~I~~-~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK  172 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHD---SLNKIFR-KLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSK  172 (290)
T ss_pred             CcEEEEeCCCcEEEEeccc---hHHHHHH-HHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhH
Confidence            4589999999654222211   1112222 1222221234556677643211211     11222233457899999999


Q ss_pred             CCCCChH
Q 026538          213 TDTVFPI  219 (237)
Q Consensus       213 ~Dl~~~~  219 (237)
                      +|+....
T Consensus       173 ~Dl~~~y  179 (290)
T KOG1533|consen  173 ADLLKKY  179 (290)
T ss_pred             hHHHHhh
Confidence            9997543

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.00051  Score=55.45  Aligned_cols=117  Identities=17%  Similarity=0.189  Sum_probs=62.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccc---eeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWG---VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~---~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .|+|+++|.--+||||+-...+..-.   ........-.|++.. ...-..+.+||.||..+.....-   .+..+.+. 
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~i-s~sfinf~v~dfPGQ~~~Fd~s~---D~e~iF~~-  101 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHI-SNSFINFQVWDFPGQMDFFDPSF---DYEMIFRG-  101 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhh-hhhhcceEEeecCCccccCCCcc---CHHHHHhc-
Confidence            47899999999999999877665410   000111111122110 00124588999999644311110   01122222 


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHHh-----cCCcEEEEEecCCCCChH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~~  219 (237)
                            +.+++||+|+.+...+.-..+...+..     -++.+=+.+.|+|-+.++
T Consensus       102 ------~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd  151 (347)
T KOG3887|consen  102 ------VGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD  151 (347)
T ss_pred             ------cCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence                  788999999864322211111111221     146677889999987654

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.45  E-value=0.0048  Score=47.62  Aligned_cols=63  Identities=13%  Similarity=0.115  Sum_probs=38.1

Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCC
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV  216 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~  216 (237)
                      .+.++|||+....   .     ....+.       .+|.++++++....-......+++.+...+.+ ..+|+|++|..
T Consensus        64 d~viiD~p~~~~~---~-----~~~~l~-------~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~  127 (179)
T cd02036          64 DYILIDSPAGIER---G-----FITAIA-------PADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD  127 (179)
T ss_pred             CEEEEECCCCCcH---H-----HHHHHH-------hCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence            6999999974321   0     011111       28999999987643222233455555554444 67899999864

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.44  E-value=0.0017  Score=54.43  Aligned_cols=29  Identities=24%  Similarity=0.473  Sum_probs=25.5

Q ss_pred             CCCCCCEEEEecCCCCchhhHHHHHhccc
Q 026538           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +..+.|+++++|++|.|||++++.+...+
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~h   85 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLH   85 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence            33567899999999999999999999874

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.40  E-value=0.00019  Score=45.67  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=18.8

Q ss_pred             CEEEEecCCCCchhhHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~  113 (237)
                      ...+|.|++|+|||||+.++.
T Consensus        24 ~~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999875

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.39  E-value=0.0014  Score=57.15  Aligned_cols=141  Identities=18%  Similarity=0.261  Sum_probs=75.1

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccc------------ce--eeccCCCCc---eEEEEEEE-----------cCCeEE
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQW------------GV--VRTSDKPGL---TQTINFFK-----------LGTKLC  141 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~------------~~--~~~~~~~g~---t~~~~~~~-----------~~~~~~  141 (237)
                      .+.+-+.+||+.-+|||||+.++...-            +.  .......|.   |....|..           ...++.
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR   94 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR   94 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence            466799999999999999999987531            00  001111221   22222211           246789


Q ss_pred             EEeCCCCCCcc--------cchHHHHHHHH----HHHH-HHhccc----c-ccEEEEEEeCCC-CCC-----hhHHHHHH
Q 026538          142 LVDLPGYGFAY--------AKEEVKDAWEE----LVKE-YVSTRV----S-LKRVCLLIDTKW-GVK-----PRDHELIS  197 (237)
Q Consensus       142 liDTpG~~~~~--------~~~~~~~~~~~----~~~~-~~~~~~----~-~d~v~~vvd~~~-~~~-----~~~~~~~~  197 (237)
                      ++|+-||.-..        ....+...|.+    +..+ -+.+..    + --++++-.|.+- .+.     +.....++
T Consensus        95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~  174 (492)
T PF09547_consen   95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE  174 (492)
T ss_pred             EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence            99999973110        00001111110    1111 111111    1 233555567552 222     22356788


Q ss_pred             HHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538          198 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV  231 (237)
Q Consensus       198 ~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~  231 (237)
                      .|+..++|+++++|-.+= ...+..++.+++.+.
T Consensus       175 ELk~igKPFvillNs~~P-~s~et~~L~~eL~ek  207 (492)
T PF09547_consen  175 ELKEIGKPFVILLNSTKP-YSEETQELAEELEEK  207 (492)
T ss_pred             HHHHhCCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence            899999999999998873 344555666666554

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01855 YqeH YqeH

Probab=97.37  E-value=0.00042  Score=54.53  Aligned_cols=42  Identities=14%  Similarity=-0.115  Sum_probs=29.7

Q ss_pred             ccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       175 ~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      +|++++|+|+..........+.  ....+.|+++|+||+|+.+.
T Consensus        35 ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~~   76 (190)
T cd01855          35 KALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLPK   76 (190)
T ss_pred             CcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCCC
Confidence            8999999998764433333331  12346899999999999754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.31  E-value=0.0002  Score=53.49  Aligned_cols=21  Identities=43%  Similarity=0.702  Sum_probs=19.6

Q ss_pred             EEEecCCCCchhhHHHHHhcc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~  115 (237)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            688999999999999999986

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.30  E-value=0.00017  Score=58.19  Aligned_cols=24  Identities=38%  Similarity=0.383  Sum_probs=21.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      =.|+|+|++|||||||+|.+-+-.
T Consensus        32 e~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          32 EFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            478999999999999999998763

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.30  E-value=0.00071  Score=42.11  Aligned_cols=40  Identities=20%  Similarity=0.198  Sum_probs=23.9

Q ss_pred             ccEEEEEEeCCCC--CChh-HHHHHHHHHhc--CCcEEEEEecCC
Q 026538          175 LKRVCLLIDTKWG--VKPR-DHELISLMERS--QTKYQVVLTKTD  214 (237)
Q Consensus       175 ~d~v~~vvd~~~~--~~~~-~~~~~~~l~~~--~~piilv~NK~D  214 (237)
                      .+.|+|++|.+..  .+-. ...+++.++..  +.|+++|+||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            6889999998753  3222 24566666653  799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.29  E-value=0.00018  Score=55.75  Aligned_cols=26  Identities=31%  Similarity=0.312  Sum_probs=22.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ..-.++|+|++|+|||||+|.+.|-.
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhcc
Confidence            34489999999999999999999863

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.28  E-value=0.00021  Score=52.99  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=22.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++|+|++|+|||||++.|+|..
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEccCCCccccceeeecccc
Confidence            478999999999999999999984

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK13695 putative NTPase; Provisional

Probab=97.27  E-value=0.0039  Score=48.31  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +|+++|.+|+|||||+..+.+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999987654

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=97.26  E-value=0.0013  Score=56.95  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=21.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...+++++|+.+||||||...|++.
T Consensus        72 ~~~~vmvvG~vDSGKSTLt~~LaN~   96 (398)
T COG1341          72 KVGVVMVVGPVDSGKSTLTTYLANK   96 (398)
T ss_pred             CCcEEEEECCcCcCHHHHHHHHHHH
Confidence            4579999999999999998777654

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.26  E-value=0.0024  Score=45.39  Aligned_cols=100  Identities=19%  Similarity=0.276  Sum_probs=51.5

Q ss_pred             EEEe-cCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538           95 IAFA-GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (237)
Q Consensus        95 i~lv-G~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      |+++ +..|+||||+.-.|...-  .......-.-.|.... .+..+.++|||+....        .....+..      
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~--~~~~~~~~~l~d~d~~-~~~D~IIiDtpp~~~~--------~~~~~l~~------   64 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVAL--AKEAGRRVLLVDLDLQ-FGDDYVVVDLGRSLDE--------VSLAALDQ------   64 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHH--HhcCCCcEEEEECCCC-CCCCEEEEeCCCCcCH--------HHHHHHHH------
Confidence            3444 579999999876665431  1000000000011000 1237999999985431        01112222      


Q ss_pred             cccEEEEEEeCCCCCChhHHHHHHHHHhcC----CcEEEEEec
Q 026538          174 SLKRVCLLIDTKWGVKPRDHELISLMERSQ----TKYQVVLTK  212 (237)
Q Consensus       174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~----~piilv~NK  212 (237)
                       +|.++++++.+..-......+++.+...+    .++.+|+|+
T Consensus        65 -aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          65 -ADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             -cCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence             89999999876432222344555554433    357788885

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.25  E-value=0.00035  Score=59.68  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             EEEEecCCCCchhhHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -++++|++|||||||++.+.|-+
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.24  E-value=0.00025  Score=51.36  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.3

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999886

...

>PRK12289 GTPase RsgA; Reviewed

Probab=97.23  E-value=0.0014  Score=56.59  Aligned_cols=54  Identities=15%  Similarity=0.196  Sum_probs=37.0

Q ss_pred             ccEEEEEEeCCCC-CChh-HHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538          175 LKRVCLLIDTKWG-VKPR-DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI  228 (237)
Q Consensus       175 ~d~v~~vvd~~~~-~~~~-~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l  228 (237)
                      +|.+++|+|...+ +... ...++..+...++|+++|+||+|+.+..+.....+.+
T Consensus        90 vD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~  145 (352)
T PRK12289         90 ADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRL  145 (352)
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHH
Confidence            8999999998643 2332 1344444555689999999999998766554444433

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.22  E-value=0.0029  Score=43.19  Aligned_cols=69  Identities=16%  Similarity=0.216  Sum_probs=41.2

Q ss_pred             EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcccc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS  174 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (237)
                      +++.|..|+||||+...+...-  .. .   |.  .+...  + .+.++|+|+........            .......
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l--~~-~---g~--~v~~~--~-d~iivD~~~~~~~~~~~------------~~~~~~~   58 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAAL--AK-R---GK--RVLLI--D-DYVLIDTPPGLGLLVLL------------CLLALLA   58 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH--HH-C---CC--eEEEE--C-CEEEEeCCCCccchhhh------------hhhhhhh
Confidence            6788999999999998887652  11 1   10  11111  1 79999999864311000            0111112


Q ss_pred             ccEEEEEEeCCC
Q 026538          175 LKRVCLLIDTKW  186 (237)
Q Consensus       175 ~d~v~~vvd~~~  186 (237)
                      +|.++++++...
T Consensus        59 ~~~vi~v~~~~~   70 (99)
T cd01983          59 ADLVIIVTTPEA   70 (99)
T ss_pred             CCEEEEecCCch
Confidence            899999998764

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.17  E-value=0.0039  Score=45.73  Aligned_cols=24  Identities=17%  Similarity=0.396  Sum_probs=21.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...++++|++|+|||+|++.+...
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~   42 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANE   42 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999887

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.15  E-value=0.00045  Score=54.35  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=21.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ...|+|+|++|||||||++.|+...
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcC
Confidence            3468899999999999999998763

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.15  E-value=0.00033  Score=55.74  Aligned_cols=25  Identities=28%  Similarity=0.303  Sum_probs=21.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .=.++++|++|||||||+.+|-+-+
T Consensus        28 Gevv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          28 GEVVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCc
Confidence            3489999999999999999998764

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.0037  Score=55.20  Aligned_cols=75  Identities=20%  Similarity=0.217  Sum_probs=41.5

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH--HHHHHHHHhcCCc---EEEEEe
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTK---YQVVLT  211 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~~~p---iilv~N  211 (237)
                      +..+.|+||+|-...  ...+......++.     ....|.|++|-.+--+-...+  ..+-+.+.....|   --++++
T Consensus       466 gfDVvLiDTAGR~~~--~~~lm~~l~k~~~-----~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~lt  538 (587)
T KOG0781|consen  466 GFDVVLIDTAGRMHN--NAPLMTSLAKLIK-----VNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLT  538 (587)
T ss_pred             CCCEEEEeccccccC--ChhHHHHHHHHHh-----cCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEE
Confidence            677999999995432  1112222222222     234899999976543322221  3444445554444   246889


Q ss_pred             cCCCCCh
Q 026538          212 KTDTVFP  218 (237)
Q Consensus       212 K~Dl~~~  218 (237)
                      |+|-++.
T Consensus       539 k~dtv~d  545 (587)
T KOG0781|consen  539 KFDTVDD  545 (587)
T ss_pred             eccchhh
Confidence            9997643

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.0069  Score=51.51  Aligned_cols=26  Identities=31%  Similarity=0.492  Sum_probs=22.5

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+.-.|.++|..|+|||||++.|.+.
T Consensus       186 tdf~VIgvlG~QgsGKStllslLaan  211 (491)
T KOG4181|consen  186 TDFTVIGVLGGQGSGKSTLLSLLAAN  211 (491)
T ss_pred             CCeeEEEeecCCCccHHHHHHHHhcc
Confidence            35567889999999999999999876

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.06  E-value=0.00058  Score=54.59  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|++|||||||++.|...
T Consensus        13 ~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         13 PLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhc
Confidence            346778999999999999999764

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.06  E-value=0.0004  Score=54.52  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.|+++|++|||||||+|.+.|-
T Consensus        32 e~vv~lGpSGcGKTTLLnl~AGf   54 (259)
T COG4525          32 ELVVVLGPSGCGKTTLLNLIAGF   54 (259)
T ss_pred             CEEEEEcCCCccHHHHHHHHhcC
Confidence            37889999999999999999875

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.03  E-value=0.0067  Score=49.01  Aligned_cols=22  Identities=36%  Similarity=0.595  Sum_probs=17.1

Q ss_pred             CEEEEe-cCCCCchhhHHHHHhc
Q 026538           93 PEIAFA-GRSNVGKSSMLNALTR  114 (237)
Q Consensus        93 ~~i~lv-G~~~~GKSTLin~L~~  114 (237)
                      +.|.++ ...|+||||++-.|.+
T Consensus         2 ~vItf~s~KGGaGKTT~~~~LAs   24 (231)
T PF07015_consen    2 PVITFASSKGGAGKTTAAMALAS   24 (231)
T ss_pred             CeEEEecCCCCCcHHHHHHHHHH
Confidence            455555 6799999999988875

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=97.02  E-value=0.0026  Score=52.81  Aligned_cols=60  Identities=22%  Similarity=0.217  Sum_probs=41.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccC-CCCceEEEEEEE------cCCeEEEEeCCCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFK------LGTKLCLVDLPGYGF  150 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g~t~~~~~~~------~~~~~~liDTpG~~~  150 (237)
                      ....|.|+|+..+|||.|+|.|++......+++ ...+|..+-+..      .+..+.++||.|+.+
T Consensus        20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~   86 (260)
T PF02263_consen   20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD   86 (260)
T ss_dssp             BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred             CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence            345778999999999999999998632222333 334666653332      145699999999977

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.01  E-value=0.00064  Score=53.01  Aligned_cols=25  Identities=24%  Similarity=0.171  Sum_probs=21.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..-.++++|++|+|||||++.++..
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~~   44 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLYA   44 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhc
Confidence            3448999999999999999999753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.01  E-value=0.0006  Score=53.20  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=22.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.++++|++|+|||||++.|.|.
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            448999999999999999999987

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.01  E-value=0.00055  Score=51.32  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=20.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      |.|+|+|+.|+|||||+..|++.
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998875

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.98  E-value=0.00057  Score=54.65  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=22.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|+|||||++.|+|..
T Consensus        27 G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          27 GEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478999999999999999999863

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00235 udk uridine kinase

Probab=96.97  E-value=0.00059  Score=54.53  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=21.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+|+|++|||||||++.|.+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            4457899999999999999999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.96  E-value=0.00059  Score=55.57  Aligned_cols=25  Identities=28%  Similarity=0.322  Sum_probs=22.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          26 GEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999999863

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.96  E-value=0.00072  Score=54.26  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=22.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|+|||||++.|.|..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        29 GEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4489999999999999999999863

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.96  E-value=0.00069  Score=53.22  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=21.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++++|++|+|||||+++|++.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            48999999999999999999976

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.95  E-value=0.00066  Score=54.31  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++++|++|+|||||++.|.|.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            8899999999999999999986

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=96.94  E-value=0.015  Score=40.77  Aligned_cols=71  Identities=18%  Similarity=0.156  Sum_probs=39.7

Q ss_pred             EEEec-CCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538           95 IAFAG-RSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (237)
Q Consensus        95 i~lvG-~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      |++.| ..|+||||+.-.|...-  .. ...+  +.-+. ....+.+.++|+|+....        .....+..      
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~--~~-~~~~--vl~~d-~d~~~d~viiD~p~~~~~--------~~~~~l~~------   61 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAAL--AR-RGKR--VLLID-LDPQYDYIIIDTPPSLGL--------LTRNALAA------   61 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHH--Hh-CCCc--EEEEe-CCCCCCEEEEeCcCCCCH--------HHHHHHHH------
Confidence            56666 68999999976665431  11 0000  00000 011267999999986431        01122222      


Q ss_pred             cccEEEEEEeCCC
Q 026538          174 SLKRVCLLIDTKW  186 (237)
Q Consensus       174 ~~d~v~~vvd~~~  186 (237)
                       +|.++++++.+.
T Consensus        62 -ad~viv~~~~~~   73 (104)
T cd02042          62 -ADLVLIPVQPSP   73 (104)
T ss_pred             -CCEEEEeccCCH
Confidence             899999998763

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>smart00275 G_alpha G protein alpha subunit

Probab=96.94  E-value=0.0027  Score=54.76  Aligned_cols=69  Identities=12%  Similarity=0.109  Sum_probs=43.8

Q ss_pred             EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC--------Ch---hHHHHHHHHHh--
Q 026538          135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KP---RDHELISLMER--  201 (237)
Q Consensus       135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--------~~---~~~~~~~~l~~--  201 (237)
                      ..+..+.+||..|...      .+..|..+    +..   +++|+||+|.+..-        ..   .....++.+..  
T Consensus       181 ~~~~~~~~~DvgGqr~------~R~kW~~~----f~~---v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~  247 (342)
T smart00275      181 VKKLFFRMFDVGGQRS------ERKKWIHC----FDN---VTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR  247 (342)
T ss_pred             ECCeEEEEEecCCchh------hhhhHHHH----hCC---CCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence            3467789999999532      34455443    332   89999999987421        01   11223333332  


Q ss_pred             --cCCcEEEEEecCCCC
Q 026538          202 --SQTKYQVVLTKTDTV  216 (237)
Q Consensus       202 --~~~piilv~NK~Dl~  216 (237)
                        .+.|+++++||.|+.
T Consensus       248 ~~~~~piil~~NK~D~~  264 (342)
T smart00275      248 WFANTSIILFLNKIDLF  264 (342)
T ss_pred             cccCCcEEEEEecHHhH
Confidence              368999999999985

Subunit of G proteins that contains the guanine nucleotide binding site

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.94  E-value=0.00065  Score=48.32  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=19.2

Q ss_pred             CEEEEecCCCCchhhHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~  113 (237)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            368999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.94  E-value=0.00065  Score=54.72  Aligned_cols=24  Identities=21%  Similarity=0.302  Sum_probs=21.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.++++|++|+|||||++.|.|.
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          26 GEIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            347899999999999999999986

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.93  E-value=0.00066  Score=53.38  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|+|||||++.|.|..
T Consensus        19 e~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        19 EVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999999863

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.93  E-value=0.00068  Score=53.22  Aligned_cols=22  Identities=41%  Similarity=0.522  Sum_probs=20.4

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++|+|++|||||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999876

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.92  E-value=0.00079  Score=55.39  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.++++|+.|||||||+++|.+-
T Consensus        28 G~i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          28 GEITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc
Confidence            347899999999999999999984

>PRK08118 topology modulation protein; Reviewed

Probab=96.92  E-value=0.00075  Score=52.14  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .+|+|+|++|||||||...|....
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999998763

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.92  E-value=0.00081  Score=54.02  Aligned_cols=25  Identities=36%  Similarity=0.315  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|+|||||++.|+|..
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            3488999999999999999999873

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK07261 topology modulation protein; Provisional

Probab=96.92  E-value=0.00073  Score=52.40  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=20.2

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +|+|+|.+|+|||||...|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998765

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.91  E-value=0.0007  Score=54.24  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=22.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|+|||||++.|.|..
T Consensus        28 G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        28 GEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3488999999999999999999873

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.91  E-value=0.00074  Score=50.80  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=22.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3478999999999999999999873

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.90  E-value=0.00072  Score=50.32  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|+++|+||||||||+..|...
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999866

...

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.89  E-value=0.00084  Score=43.81  Aligned_cols=21  Identities=43%  Similarity=0.591  Sum_probs=19.4

Q ss_pred             EEEecCCCCchhhHHHHHhcc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~  115 (237)
                      |++.|.+|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999999876

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK04195 replication factor C large subunit; Provisional

Probab=96.89  E-value=0.016  Score=52.39  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+.++|.|++|+||||++++|+..
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999876

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.89  E-value=0.00089  Score=53.31  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.++++|++|+|||||++.|+|.
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          26 GEIIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            348899999999999999999986

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.88  E-value=0.00074  Score=54.37  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=22.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|+|||||++.|.|..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          26 GEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3488999999999999999999863

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.88  E-value=0.00078  Score=53.60  Aligned_cols=24  Identities=33%  Similarity=0.346  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|+|||||++.|.|..
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999999873

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.88  E-value=0.00076  Score=55.14  Aligned_cols=24  Identities=33%  Similarity=0.481  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|+|||||++.|.|..
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        29 EFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            488999999999999999999863

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.88  E-value=0.00077  Score=54.28  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|+|||||++.|+|..
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          31 EFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999999873

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.88  E-value=0.00078  Score=53.92  Aligned_cols=25  Identities=24%  Similarity=0.314  Sum_probs=22.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|+|||||++.|+|..
T Consensus        27 G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          27 GEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478999999999999999999873

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.88  E-value=0.00084  Score=52.19  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.88  E-value=0.00079  Score=53.80  Aligned_cols=24  Identities=13%  Similarity=0.246  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|+|||||++.|.|..
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          27 EIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999999873

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.87  E-value=0.0011  Score=51.48  Aligned_cols=22  Identities=41%  Similarity=0.625  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|+++|++|||||||++.|.+.
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            6899999999999999999986

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.87  E-value=0.0021  Score=52.24  Aligned_cols=25  Identities=24%  Similarity=0.320  Sum_probs=22.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+|.|++|+|||||++.|.+.
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~   56 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEAL   56 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3468899999999999999999876

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.87  E-value=0.00084  Score=52.07  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=21.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+.+.|+|++|||||||+++|...
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            3468899999999999999998865

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.87  E-value=0.00081  Score=53.86  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.++++|++|+|||||++.|+|.
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          26 GEFLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            347899999999999999999986

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.85  E-value=0.001  Score=51.10  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=22.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ..-.++++|++|+|||||++.|.|..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34489999999999999999999873

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.85  E-value=0.0004  Score=54.00  Aligned_cols=25  Identities=36%  Similarity=0.395  Sum_probs=21.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +.-+++.|++|+||||++++|+...
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3467899999999999999999874

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.85  E-value=0.00085  Score=53.98  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|+|||||++.|.|..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          29 EIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999999873

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.84  E-value=0.001  Score=53.83  Aligned_cols=24  Identities=38%  Similarity=0.427  Sum_probs=21.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.++++|++|+|||||++.|.|.
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~   49 (227)
T cd03260          26 GEITALIGPSGCGKSTLLRLLNRL   49 (227)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            348899999999999999999987

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.84  E-value=0.00086  Score=54.49  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|+|||||++.|.|..
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          31 GEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3488999999999999999999873

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.84  E-value=0.00099  Score=52.02  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=21.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+.|+++|.+||||||+.+.|...
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~   26 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEK   26 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999843

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.84  E-value=0.00097  Score=53.07  Aligned_cols=25  Identities=36%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ....+++|++|||||||+.+|-..+
T Consensus        33 ~~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          33 NKVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             CceEEEECCCCcCHHHHHHHHHhhc
Confidence            3477999999999999998887654

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.84  E-value=0.0011  Score=53.11  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|+|||||++.|+|..
T Consensus        26 G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          26 GEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3488999999999999999999873

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.83  E-value=0.018  Score=44.61  Aligned_cols=66  Identities=17%  Similarity=0.043  Sum_probs=43.7

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      .+.+.++|||+...    .        .....+.   .+|.+++++.....-......+++.+...+.|+.+|+||+|..
T Consensus        92 ~~d~viiDtpp~~~----~--------~~~~~l~---~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~  156 (179)
T cd03110          92 GAELIIIDGPPGIG----C--------PVIASLT---GADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN  156 (179)
T ss_pred             CCCEEEEECcCCCc----H--------HHHHHHH---cCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence            56799999996432    1        0111111   2899999998764322333556666777788999999999975


Q ss_pred             C
Q 026538          217 F  217 (237)
Q Consensus       217 ~  217 (237)
                      .
T Consensus       157 ~  157 (179)
T cd03110         157 D  157 (179)
T ss_pred             c
Confidence            3

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=96.83  E-value=0.014  Score=47.12  Aligned_cols=25  Identities=20%  Similarity=0.496  Sum_probs=20.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+.+++.|+||+|||||.+.+...
T Consensus        49 ~l~h~lf~GPPG~GKTTLA~IIA~e   73 (233)
T PF05496_consen   49 ALDHMLFYGPPGLGKTTLARIIANE   73 (233)
T ss_dssp             ---EEEEESSTTSSHHHHHHHHHHH
T ss_pred             CcceEEEECCCccchhHHHHHHHhc
Confidence            4579999999999999999999876

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.83  E-value=0.00094  Score=52.00  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|+|||||++.|.|..
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999999863

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.82  E-value=0.0009  Score=54.31  Aligned_cols=23  Identities=13%  Similarity=0.300  Sum_probs=21.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++++|++|+|||||++.|+|.
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl   49 (232)
T cd03218          27 EIVGLLGPNGAGKTTTFYMIVGL   49 (232)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999986

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.82  E-value=0.0011  Score=53.41  Aligned_cols=25  Identities=32%  Similarity=0.300  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|+|||||++.|+|..
T Consensus        31 G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        31 GEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3488999999999999999999873

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK00098 GTPase RsgA; Reviewed

Probab=96.82  E-value=0.0051  Score=52.09  Aligned_cols=44  Identities=20%  Similarity=0.191  Sum_probs=32.2

Q ss_pred             cccEEEEEEeCCCCC-Chh-HHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          174 SLKRVCLLIDTKWGV-KPR-DHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       174 ~~d~v~~vvd~~~~~-~~~-~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      .+|.+++|+|+..+. ... ...++..+...++|+++|+||+|+.+
T Consensus        80 niD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~  125 (298)
T PRK00098         80 NVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLD  125 (298)
T ss_pred             cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCC
Confidence            389999999986542 222 23455556667899999999999973

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.81  E-value=0.00092  Score=55.25  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++|+|++|+|||||++.|+|..
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         27 GELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3489999999999999999999873

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.81  E-value=0.00094  Score=53.66  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|+|||||++.|.|..
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          32 EVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            478999999999999999999873

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.81  E-value=0.00093  Score=54.51  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|+|||||++.|+|..
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          28 EFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            478999999999999999999863

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.81  E-value=0.00094  Score=54.30  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|+|||||++.|+|..
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         36 EMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999999873

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.81  E-value=0.001  Score=51.91  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=21.1

Q ss_pred             EEEEecCCCCchhhHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +|+|+|+|||||||+...|....
T Consensus         2 riiilG~pGaGK~T~A~~La~~~   24 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL   24 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999998764

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.81  E-value=0.0061  Score=52.70  Aligned_cols=62  Identities=16%  Similarity=0.136  Sum_probs=47.2

Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHHhc--CCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                      +......|+|+.|+|+.++.......+-+.++..  .+.+++|+|||||++..-...++..+.+
T Consensus       208 yKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSk  271 (572)
T KOG2423|consen  208 YKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSK  271 (572)
T ss_pred             HHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhh
Confidence            3444558999999999998877776666666654  4679999999999988766666665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
1sul_A	195	Crystal Structure Of The Apo-Ysxc Length = 195		6e-25
1pui_A	210	Structure Of Engb Gtpase Length = 210		2e-24
3pqc_A	195	Crystal Structure Of Thermotoga Maritima Ribosome B		6e-24
4dhe_A	223	Crystal Structure Of A Probable Gtp-Binding Protein		2e-19
1puj_A	282	Structure Of B. Subtilis Ylqf Gtpase Length = 282		3e-05
2cxx_A	190	Crystal Structure Of A Probable Gtp-binding Protein		5e-05
3qq5_A	423	Crystal Structure Of The [fefe]-Hydrogenase Maturat		3e-04
2dyk_A	161	Crystal Structure Of N-Terminal Gtp-Binding Domain		4e-04

>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc Length = 195

Iteration: 1
 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 83/143 (58%)
Query: 74  KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
           K E   +A     +P   LPEIA AGRSNVGKSS +N+L  +  + RTS KPG TQT+NF
Sbjct: 5   KSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF 64
Query: 134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 193
           + +  +L  VD+PGYGFA   +  ++AW  +++ Y++TR  LK V  ++D +      D 
Sbjct: 65  YIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV 124
Query: 194 ELISLMERSQTKYQVVLTKTDTV 216
           ++   ++       V+ TK D +
Sbjct: 125 QMYEFLKYYGIPVIVIATKADKI 147

>pdb|1PUI|A Chain A, Structure Of Engb Gtpase Length = 210

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 79/139 (56%)
Query: 76  EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
            F  +A      P+    E+AFAGRSN GKSS LN LT Q  + RTS  PG TQ IN F+
Sbjct: 10  HFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE 69
Query: 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
           +     LVDLPGYG+A   EE+K  W+  + EY+  R SL+ + +L+D +  +K  D ++
Sbjct: 70  VADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQM 129
Query: 196 ISLMERSQTKYQVVLTKTD 214
           I     S     V+LTK D
Sbjct: 130 IEWAVDSNIAVLVLLTKAD 148

>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP Length = 195

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 94/158 (59%), Gaps = 8/158 (5%)
Query: 75  LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
           +E    A+    +P P   E+AF GRSNVGKSS+LNAL  +  +   S  PG T++INF+
Sbjct: 6   VELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFY 64
Query: 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 194
            + +K   VDLPGYG+A   ++ +  W+ LV++Y   R SL+ V LL+D +  + P+D +
Sbjct: 65  LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGR--IPPQDSD 122
Query: 195 L--ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230
           L  +  M+     + +VLTK D V    ++ RA ++EE
Sbjct: 123 LMMVEWMKSLNIPFTIVLTKMDKV---KMSERAKKLEE 157

>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb From Burkholderia Thailandensis Length = 223

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 77  FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
           FF         P    PEIAFAGRSN GKS+ +N L  Q  +   S  PG TQ IN+F +
Sbjct: 14  FFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSV 73
Query: 137 GTK----LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
           G        LVDLPGYG+A      K  WE+L+  Y+ TR  L  + L++D +  +   D
Sbjct: 74  GPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD 133
Query: 193 HELISLMERSQTKYQVVLTKTDTV 216
             +I     +      +LTK D +
Sbjct: 134 RRMIEWFAPTGKPIHSLLTKCDKL 157

>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase Length = 282

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 99  GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           G  NVGKS+++N L ++  + +T D+PG+T +  + K+G +L L+D PG
Sbjct: 127 GIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174

>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb Length = 190

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 31/158 (19%)
Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA- 153
           I FAGRSNVGKS+++  LT +   VR   +PG+T+ I   +      ++D PG+GF    
Sbjct: 4   IIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNH-KIIDXPGFGFXXGL 60
Query: 154 ----KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK--------W---GVKPRDHELISL 198
               +E +KD   E+V        ++    L++D K        W   G  P D E    
Sbjct: 61  PKEVQERIKD---EIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117
Query: 199 MERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYLC 236
           +        V + K D +           ++EVI +L 
Sbjct: 118 LRELDIPTIVAVNKLDKI---------KNVQEVINFLA 146

>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation Protein Hydf Length = 423

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 149
           I  AGR NVGKSS +NAL  Q  V   SD  G T     +++    +G  + LVD PG  
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGL- 93
Query: 150 FAYAKEEVKDAWEELVKEYV--STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ 207
                    D   EL +  V  + RV  +  C ++ T     P + ++++L +  +  + 
Sbjct: 94  ---------DDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFV 144
Query: 208 VVLTKTDTV 216
           VV+ K D +
Sbjct: 145 VVVNKIDVL 153

>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGY 148
           + ++   GR NVGKSS+ N L ++   V  +D PG+T+ +    + T   +  LVD  G 
Sbjct: 1   MHKVVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETDRGRFLLVDTGGL 59
Query: 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLL-IDTKWGVKPRDHELISLMERSQTKYQ 207
                     D WE+ ++E V   +    V L  +D +  +   D+E+   + R      
Sbjct: 60  WSG-------DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVI 112
Query: 208 VVLTKTD 214
           +V TK D
Sbjct: 113 LVATKVD 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	2e-60
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	9e-60
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	5e-59
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	9e-58
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	1e-37
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	8e-21
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	1e-10
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	3e-08
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	7e-08
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	1e-07
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	4e-07
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	5e-07
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	5e-07
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	6e-07
2wji_A	165	Ferrous iron transport protein B homolog; membrane	3e-06
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	3e-06
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	4e-06
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	5e-06
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	7e-06
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	1e-05
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	5e-05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	7e-05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	1e-04
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	7e-05
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	7e-05
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	1e-04
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	1e-04
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	4e-04

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Length = 195

 Score =  187 bits (478), Expect = 2e-60
 Identities = 56/160 (35%), Positives = 88/160 (55%)

Query: 73  NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
            K E   +A     +P   LPEIA AGRSNVGKSS +N+L  +  + RTS KPG TQT+N
Sbjct: 4   TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63

Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
           F+ +  +L  VD+PGYGFA   +  ++AW  +++ Y++TR  LK V  ++D +      D
Sbjct: 64  FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD 123

Query: 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
            ++   ++       V+ TK D +      + A  + + +
Sbjct: 124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL 163

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Length = 210

 Score =  186 bits (475), Expect = 9e-60
 Identities = 61/164 (37%), Positives = 87/164 (53%)

Query: 69  NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
           N+   +  F  +A      P+    E+AFAGRSN GKSS LN LT Q  + RTS  PG T
Sbjct: 3   NLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT 62

Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
           Q IN F++     LVDLPGYG+A   EE+K  W+  + EY+  R SL+ + +L+D +  +
Sbjct: 63  QLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL 122

Query: 189 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
           K  D ++I     S     V+LTK D +       +   + E +
Sbjct: 123 KDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV 166

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195

 Score =  183 bits (468), Expect = 5e-59
 Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 1/160 (0%)

Query: 73  NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
             +E    A+    +P P   E+AF GRSNVGKSS+LNAL  +  +   S  PG T++IN
Sbjct: 4   RDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSIN 62

Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
           F+ + +K   VDLPGYG+A   ++ +  W+ LV++Y   R SL+ V LL+D +   +  D
Sbjct: 63  FYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSD 122

Query: 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
             ++  M+     + +VLTK D V   + A++  +  +V 
Sbjct: 123 LMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVF 162

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Length = 223

 Score =  181 bits (462), Expect = 9e-58
 Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 4/164 (2%)

Query: 73  NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
           ++  FF         P    PEIAFAGRSN GKS+ +N L  Q  +   S  PG TQ IN
Sbjct: 10  HQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN 69

Query: 133 FFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
           +F +G        LVDLPGYG+A      K  WE+L+  Y+ TR  L  + L++D +  +
Sbjct: 70  YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL 129

Query: 189 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
              D  +I     +      +LTK D +   +        ++ +
Sbjct: 130 TELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSL 173

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score =  128 bits (325), Expect = 1e-37
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 16/138 (11%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151
           +  I FAGRSNVGKS+++  LT +   VR   +PG+T+ I   +      ++D+PG+GF 
Sbjct: 1   MATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHK-IIDMPGFGFM 57

Query: 152 YAKE-EVKDAWEELVKEYVSTRV-SLKRVCLLIDTK-----------WGVKPRDHELISL 198
                EV++  ++ +  ++     ++    L++D K            G  P D E    
Sbjct: 58  MGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117

Query: 199 MERSQTKYQVVLTKTDTV 216
           +        V + K D +
Sbjct: 118 LRELDIPTIVAVNKLDKI 135

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 89.0 bits (220), Expect = 8e-21
 Identities = 27/173 (15%), Positives = 56/173 (32%), Gaps = 18/173 (10%)

Query: 64  ERIEENIFRNKLEFFAAAKVSSSFPAPD--LPEIAFAGRSNVGKSSMLNALTRQWG---V 118
             IE  +    ++    + +S +    D  +  +A  G +  GKSS +N L         
Sbjct: 40  NLIELRMRAGNIQL-TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG 98

Query: 119 VRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLK 176
              +    +T   + +K      +   DLPG G      +           Y+      +
Sbjct: 99  AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD----------TYLEKMKFYE 148

Query: 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229
               +I +    K  D ++   +   + ++  V TK D+    +        +
Sbjct: 149 YDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFD 201

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 21/130 (16%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 149
           I  AGR NVGKSS +NAL  Q  V   SD  G T     +++    +G  + LVD PG  
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGL- 93

Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRV---CLLIDTKWGVKPRDHELISLMERSQTKY 206
                ++V +     V+     R    R     L+ D+     P + ++++L +  +  +
Sbjct: 94  -----DDVGELGRLRVE---KARRVFYRADCGILVTDSAPT--PYEDDVVNLFKEMEIPF 143

Query: 207 QVVLTKTDTV 216
            VV+ K D +
Sbjct: 144 VVVVNKIDVL 153

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           NVGKS+++N L ++  + +T D+PG+T +  + K+G +L L+D PG
Sbjct: 130 NVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score = 50.7 bits (122), Expect = 7e-08
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           N GKS+++N L  +        +PG+T+ I +F L   + ++D PG
Sbjct: 109 NTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPG 153

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 95  IAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
           +   G +NVGKS+ +N +          V+ TS  PG T  +    L  +  L D PG 
Sbjct: 163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301

 Score = 49.0 bits (116), Expect = 4e-07
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 28/156 (17%)

Query: 95  IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 142
           +   G S +GKS+++N+L       +  +   ++K   T  I    +         +L +
Sbjct: 21  LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80

Query: 143 VDLPGYGFA----YAKEEVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWGVK 189
           VD PGYG A       + +    +E  + Y+     L R          C    + +G  
Sbjct: 81  VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 140

Query: 190 PRDHELISLMERSQTKYQV--VLTKTDTVFPIDVAR 223
            +  + ++ M+    K  +  V+ K DT+   +  R
Sbjct: 141 LKPLD-VAFMKAIHNKVNIVPVIAKADTLTLKERER 175

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Length = 272

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 18/73 (24%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKLGTKLCLVDLP 146
           IA  G  N GK+S+ N +T   Q    W        PG+T  +     K    L + DLP
Sbjct: 6   IALIGNPNSGKTSLFNLITGHNQRVGNW--------PGVTVERKSGLVKKNKDLEIQDLP 57

Query: 147 G-YGF-AYAKEEV 157
           G Y    Y+ E  
Sbjct: 58  GIYSMSPYSPEAK 70

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161

 Score = 47.1 bits (113), Expect = 5e-07
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 145
           + ++   GR NVGKSS+ N L ++    R++   D PG+T+ +          +  LVD 
Sbjct: 1   MHKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVTRDLKEGVVETDRGRFLLVDT 56

Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 204
            G           D WE+ ++E V   +    V L  +D +  +   D+E+   + R   
Sbjct: 57  GGL-------WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGK 109

Query: 205 KYQVVLTKTD 214
              +V TK D
Sbjct: 110 PVILVATKVD 119

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
           +   G +NVGKS+ +N +  +      V+ TS  PG T  +    L +   L D PG   
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIIN 224

Query: 151 AYAKEEVKDAWE 162
            +      DA +
Sbjct: 225 HHQMAHFVDARD 236

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           IA  G  NVGKS++ NALT        W        PG+T  +    F+  G K  +VDL
Sbjct: 6   IALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDL 57

Query: 146 PG-YGF-AYAKEEV 157
           PG Y   A + +E+
Sbjct: 58  PGVYSLTANSIDEI 71

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 18/135 (13%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 151
           +   G+  VGKSS +N+L  +  VVR S                 G  + ++D PG    
Sbjct: 39  VLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV-- 95

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ---- 207
                V     EL+K ++  R       LL   +  V   D     ++      +     
Sbjct: 96  -EAGYVNHQALELIKGFLVNR---TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151

Query: 208 ----VVLTKTDTVFP 218
               +VLT      P
Sbjct: 152 CKTLLVLTHAQFSPP 166

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           IA  G  NVGKS++ NALT        W        PG+T  +    F+  G K  +VDL
Sbjct: 10  IALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDL 61

Query: 146 PG-YGF-AYAKEEV 157
           PG Y   A + +E+
Sbjct: 62  PGVYSLTANSIDEI 75

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Length = 271

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 19/74 (25%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           +A  G  NVGK+++ NALT  RQ    W        PG+T  +     +    +  +VDL
Sbjct: 6   VALVGNPNVGKTTIFNALTGLRQHVGNW--------PGVTVEKKEGIMEYREKEFLVVDL 57

Query: 146 PG-YGF-AYAKEEV 157
           PG Y   A++ +E+
Sbjct: 58  PGIYSLTAHSIDEL 71

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Length = 258

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 19/74 (25%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           +A AG  NVGK+S+ NALT  +Q    W        PG+T  +    F   G  + L+DL
Sbjct: 8   VALAGCPNVGKTSLFNALTGTKQYVANW--------PGVTVEKKEGVFTYKGYTINLIDL 59

Query: 146 PG-YGF-AYAKEEV 157
           PG Y     + +E 
Sbjct: 60  PGTYSLGYSSIDEK 73

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Length = 274

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 21/86 (24%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           I   G  N GK+++ N LT  RQ    W         G+T  +    F     ++ LVDL
Sbjct: 6   IGLIGNPNSGKTTLFNQLTGSRQRVGNW--------AGVTVERKEGQFSTTDHQVTLVDL 57

Query: 146 PG-YGF-AYAKEEVKDAWEELVKEYV 169
           PG Y     + +   D  E++   Y+
Sbjct: 58  PGTYSLTTISSQTSLD--EQIACHYI 81

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 361

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 28/165 (16%)

Query: 95  IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 142
           +   G S +GKS+++N+L       +  +   ++K   T  I    +         +L +
Sbjct: 40  LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99

Query: 143 VDLPGYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWG-- 187
           VD PGYG A         +    +E  + Y+     L R          C    + +G  
Sbjct: 100 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 159

Query: 188 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
           +KP D   +  +  ++     V+ K DT+   +  R   +I + I
Sbjct: 160 LKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEI 203

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 33/252 (13%), Positives = 65/252 (25%), Gaps = 62/252 (24%)

Query: 17  QPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKL- 75
           +    +  FVE+ L          R  Y   L +P+       S       E   R++L 
Sbjct: 74  KQEEMVQKFVEEVL----------RINYKF-LMSPIKTEQRQPSMMTRMYIE--QRDRLY 120

Query: 76  ---EFFAAAKVSSSFPAPDL--------PE--IAFAGRSNVGKSSMLNALTRQ------- 115
              + FA   VS   P   L        P   +   G    GK+ +   +          
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 116 -----WGVVRTSDKPG--LTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167
                W  ++  + P   L        ++                    ++     L+K 
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 168 YVSTRVSLKRVCLLI-DTKWGVKPRDHELISLME-RSQTKYQVVLTK----TDTVFPIDV 221
                      CLL+          + +  +      +    ++ T+    TD +     
Sbjct: 241 KPYEN------CLLVLLNVQ-----NAKAWNAFNLSCKI---LLTTRFKQVTDFLSAATT 286

Query: 222 ARRAMQIEEVIF 233
              ++    +  
Sbjct: 287 THISLDHHSMTL 298

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Length = 256

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 23/78 (29%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
               G  N GK+++ NALT   Q    W        PG+T  +    F L    + + DL
Sbjct: 4   ALLIGNPNCGKTTLFNALTNANQRVGNW--------PGVTVEKKTGEFLLGEHLIEITDL 55

Query: 146 PG------YGFAYAKEEV 157
           PG           +++E 
Sbjct: 56  PGVYSLVANAEGISQDEQ 73

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 88  PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
              ++ +    GR NVGKSS++NA+  +  V+  S+  G T
Sbjct: 171 YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTT 210

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 17/131 (12%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 145
            P +A  GR NVGKS++ N +  +    R S   D PG+T+   +     L     L+D 
Sbjct: 3   KPVVAIVGRPNVGKSTIFNRIAGE----RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDT 58

Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 204
            G       +   + +   +++     +    V + +++ + GV   D E+  ++ R++ 
Sbjct: 59  GGI------DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKK 112

Query: 205 KYQVVLTKTDT 215
              + + K D 
Sbjct: 113 PVVLAVNKLDN 123

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274

 Score = 42.1 bits (98), Expect = 7e-05
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 27/152 (17%)

Query: 98  AGRSNVGKSSMLNAL-----------TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP 146
            G S +GKS+++N+L                + +T         I    +   L +VD P
Sbjct: 14  VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTP 73

Query: 147 GYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWGVKPRDH 193
           G+G A         V D  +   ++Y++    + R          CL      G   +  
Sbjct: 74  GFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 133

Query: 194 ELISLMERSQTKYQV--VLTKTDTVFPIDVAR 223
           + I  M+R   K  +  ++ K DT+ P +  +
Sbjct: 134 D-IEFMKRLHEKVNIIPLIAKADTLTPEECQQ 164

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 90  PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVD 144
            D  ++A  GR NVGKS++ NA+  +   +  S  PG T+       F  G K   VD
Sbjct: 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFIDGRKYVFVD 234

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 16/132 (12%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 145
           +  +   GR NVGKS++ N L ++    + +   D+ G+T+          G    LVD 
Sbjct: 1   MATVLIVGRPNVGKSTLFNKLVKK----KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT 56

Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 204
            G       +  +D   + +KE     +    + L ++D K G+   D  L   + +S  
Sbjct: 57  CGV-----FDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTV 111

Query: 205 KYQVVLTKTDTV 216
              +V  K + +
Sbjct: 112 DTILVANKAENL 123

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 25/176 (14%)

Query: 60  SSERERIEENIFRNKLEFFAAAKV---SSSFPAPDLPE--IAFAGRSNVGKSSMLNALTR 114
           +S+++ + E    N        K+     +    D+    I   G+  VGKSS +N++  
Sbjct: 2   ASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61

Query: 115 QWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171
           +  VV  S           ++  + G  L ++D PG               ++    + +
Sbjct: 62  E-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL-------IEGGYINDMALNIIKS 113

Query: 172 RVSLKRV-CLLIDTKWGVKPRDHELISLMERSQTKYQ--------VVLTKTDTVFP 218
            +  K +  LL   +      D+    + +     +         V LT      P
Sbjct: 114 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 38/195 (19%), Positives = 60/195 (30%), Gaps = 49/195 (25%)

Query: 83  VSSSFPAPDL---PEIAFAGRSNVGKSSMLNALTRQ------WGVVRTSDK--------- 124
            S +    D    P +  AG+ + GK+S +  L  Q       G   T+D          
Sbjct: 53  HSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGET 112

Query: 125 ----PGLT-----------------QTINFFKLGT-------KLCLVDLPGYGFAYAKEE 156
               PG                     +N F            + ++D PG      +  
Sbjct: 113 EGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRV 172

Query: 157 VKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215
            +      V  + + RV L  + LL D  K  +     E I  +   + K +VVL K D 
Sbjct: 173 SRGYDFPAVLRWFAERVDL--IILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADM 230

Query: 216 VFPIDVARRAMQIEE 230
           V    + R    +  
Sbjct: 231 VETQQLMRVYGALMW 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.91
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.88
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.85
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.85
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.83
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.82
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.81
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.81
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.8
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.8
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.8
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.8
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.8
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.79
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.79
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.79
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.79
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.78
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.78
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.78
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.77
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.77
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.76
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.75
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.75
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.75
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.75
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.75
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.74
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.74
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.74
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.74
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.74
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.74
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.73
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.73
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.73
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.73
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.73
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.73
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.73
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.73
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.73
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.72
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.72
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.72
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.72
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.71
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.71
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.71
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.71
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.7
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.7
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.7
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.7
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.7
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.7
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.7
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.7
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.7
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.7
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.69
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.69
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.69
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.69
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.69
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.69
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.69
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.69
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.69
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.69
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.69
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.68
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.68
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.68
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.68
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.68
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.68
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.68
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.68
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.68
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.68
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.68
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.68
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.68
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.68
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.68
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.68
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.68
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.67
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.67
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.67
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.67
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.67
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.67
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.67
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.67
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.67
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.67
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.67
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.67
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.67
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.67
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.67
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.67
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.66
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.66
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.66
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.66
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.66
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.66
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.66
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.66
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.66
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.66
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.66
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.66
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.66
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.66
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.66
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.65
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.65
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.65
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.65
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.65
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.65
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.65
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.65
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.65
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.65
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.65
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.65
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.64
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.64
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.64
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.64
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.64
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.64
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.64
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.64
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.63
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.63
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.63
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.63
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.63
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.63
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.63
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.63
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.63
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.63
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.62
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.62
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.62
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.62
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.62
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.62
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.61
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.61
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.61
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.61
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.61
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.6
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.6
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.59
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.59
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.38
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.59
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.59
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.59
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.58
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.58
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.58
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.58
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.56
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.56
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.56
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.54
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.54
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.53
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.53
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.52
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.52
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.51
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.5
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.49
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.49
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.47
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.46
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.41
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.4
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.4
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.39
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.36
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.36
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.35
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.33
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.28
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.24
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.17
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.16
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.15
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.1
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.08
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.01
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.01
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.94
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.93
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.8
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.74
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.68
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.64
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.48
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.42
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.31
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.27
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.26
2xxa_A	433	Signal recognition particle protein; protein trans	98.26
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.17
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.1
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.06
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.04
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.02
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.0
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.97
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.89
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.81
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.78
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.72
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.65
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.64
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.62
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.62
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.51
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.5
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	97.49
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.45
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.42
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.39
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.37
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.37
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.36
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.32
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.27
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.26
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.24
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.24
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.23
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.19
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.18
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.18
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.16
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.15
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.12
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.1
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.1
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.09
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.09
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.07
1g6h_A	257	High-affinity branched-chain amino acid transport	97.06
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.05
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.05
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.05
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.05
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.04
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.04
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.04
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.03
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.02
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.02
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.01
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.99
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.99
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.99
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.98
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.98
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.97
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.97
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.95
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.95
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.95
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.94
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.94
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.94
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.93
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.93
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.92
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.9
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.89
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.87
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.86
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.86
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.85
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.85
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.84
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.84
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.84
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.83
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.81
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.78
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.77
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.77
3end_A	307	Light-independent protochlorophyllide reductase ir	96.76
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.76
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.76
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.73
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.73
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.71
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.71
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.71
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.71
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.71
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.71
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.7
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.7
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.69
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.69
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.68
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.67
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.66
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.66
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.66
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.65
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.65
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.64
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.63
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.62
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.62
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.6
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.6
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.59
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.58
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.58
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.57
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.57
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.57
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.57
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.56
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.55
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.55
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.55
2og2_A	359	Putative signal recognition particle receptor; nuc	96.54
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.52
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.51
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.51
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.5
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.49
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.49
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.48
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.47
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.47
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.46
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.46
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.43
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.43
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.42
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.41
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.4
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.4
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.39
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.39
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.37
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.36
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.35
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.34
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.34
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.33
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.33
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.33
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.26
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.26
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.25
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.21
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.2
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.2
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.2
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.19
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.17
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.17
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.17
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.16
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.15
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.15
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.15
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.13
1via_A	175	Shikimate kinase; structural genomics, transferase	96.12
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.11
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.09
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.09
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.09
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.08
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.08
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.07
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.07
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.07
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.06
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.06
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.04
3pvs_A	447	Replication-associated recombination protein A; ma	96.04
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.03
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.03
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.03
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.03
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.02
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.01
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.0
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.99
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.99
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.98
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.97
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.97
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.96
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.96
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.96
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.93
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.92
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.92
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.92
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.92
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.91
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.91
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.91
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.9
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.9
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.89
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.88
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.87
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.87
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.87
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.87
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.86
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.82
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.82
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.81
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.79
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.79
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.79
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.78
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.78
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.78
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.75
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.75
3bos_A	242	Putative DNA replication factor; P-loop containing	95.72
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.71
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.7
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.67
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.66
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.62
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.61
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.6
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.6
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.6
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.59
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.58
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.58
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.57
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.55
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.54
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.54
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.53
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.52
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.46
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.43
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.42
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.41
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.39
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.38
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.33
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.33
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.32
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.3
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.29
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.27
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.24
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.23
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.21
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.2
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.2
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.17
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.15
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.11
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	95.06
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.05
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.03
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.02
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.02
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	95.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.99
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.98
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.97
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	94.95
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.95
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.91
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.87
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	94.85

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=1.2e-24  Score=174.22  Aligned_cols=150  Identities=34%  Similarity=0.534  Sum_probs=123.0

Q ss_pred             CCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC----CeEEEEeCCCCCCcccchHHHHH
Q 026538           85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDA  160 (237)
Q Consensus        85 ~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~  160 (237)
                      ...+....++|+++|.+|+|||||+|+|++......++..+++|.+.......    ..+.||||||+.++.......+.
T Consensus        22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~  101 (223)
T 4dhe_A           22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH  101 (223)
T ss_dssp             GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence            34555677899999999999999999999984356788888999887665543    78999999998775444445667


Q ss_pred             HHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 026538          161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFY  234 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~  234 (237)
                      |..+...|+.....+|++++|+|+.+++...+..++..+...++|+++|+||+|+.+..+.....+.+.+.+..
T Consensus       102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~  175 (223)
T 4dhe_A          102 WEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDA  175 (223)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence            77888888888777999999999998888888888898888899999999999999887776666666665554

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.91  E-value=4.6e-24  Score=167.21  Aligned_cols=149  Identities=36%  Similarity=0.620  Sum_probs=109.4

Q ss_pred             cCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538           84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (237)
Q Consensus        84 ~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~  163 (237)
                      ..+.+....++|+++|.+|+|||||+|+|++........+.+++|.+...+..+..+.+|||||+.+........+.+..
T Consensus        15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (195)
T 1svi_A           15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             hhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHH
Confidence            34455567789999999999999999999988434566778888888877776778999999998775444444556667


Q ss_pred             HHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                      +...|+.....+|++++|+|+..+.+..+..+++++...+.|+++|+||+|+.+..+.....+.+.+.+
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~  163 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL  163 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHH
Confidence            777777776667999999999888888877778888888899999999999998776666566666544

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.91  E-value=1e-23  Score=164.82  Aligned_cols=152  Identities=37%  Similarity=0.604  Sum_probs=122.4

Q ss_pred             hhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHH
Q 026538           81 AKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDA  160 (237)
Q Consensus        81 ~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~  160 (237)
                      .......+....++|+++|.+|||||||+|+|++. ......+.+++|........+..+.+|||||+............
T Consensus        12 ~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   90 (195)
T 3pqc_A           12 ARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERML   90 (195)
T ss_dssp             ECSTTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS-CCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHH
T ss_pred             hcChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcC-ccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHH
Confidence            33444556667889999999999999999999998 45667788888888887777888999999998765444444556


Q ss_pred             HHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      +..+...|+.....++++++|+|+..........+..++...+.|+++|+||+|+.++.+.....+.+++.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~  163 (195)
T 3pqc_A           91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS  163 (195)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHh
Confidence            7777888888777789999999998887787788888888889999999999999877766666666665544

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.88  E-value=3.7e-23  Score=183.28  Aligned_cols=176  Identities=22%  Similarity=0.189  Sum_probs=96.1

Q ss_pred             CcceEEeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHh
Q 026538           34 RRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        34 ~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~  113 (237)
                      .+++... +.+++.+|||+|+++.............+.................  ...++|+++|.+|||||||+|+|+
T Consensus       178 ~~L~~~~-a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~--r~~~kV~ivG~~nvGKSSLln~L~  254 (476)
T 3gee_A          178 EQLIRSC-ALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIV--SEGVSTVIAGKPNAGKSTLLNTLL  254 (476)
T ss_dssp             THHHHHH-HTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCEEEEEECCTTSSHHHHHHHCC
T ss_pred             HHHHHHH-HHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh--cCCCEEEEECCCCCCHHHHHHHHh
Confidence            4444444 4899999999998887665554443333433333333222211111  134689999999999999999999


Q ss_pred             cccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHH-HHHHHhccccccEEEEEEeCCCCCC
Q 026538          114 RQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLIDTKWGVK  189 (237)
Q Consensus       114 ~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~v~~vvd~~~~~~  189 (237)
                      +. ....+++.+|+|++..   +...+..+.+|||||+.+..  +    .+..+ +.........+|++++|+|++.+.+
T Consensus       255 ~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~--~----~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s  327 (476)
T 3gee_A          255 GQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG--E----EIEHEGIRRSRMKMAEADLILYLLDLGTERL  327 (476)
T ss_dssp             -------------------CEEEEETTEEEEEEC--------------------------CCCSSCSEEEEEEETTTCSS
T ss_pred             CC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch--h----HHHHHHHHHHHhhcccCCEEEEEEECCCCcc
Confidence            98 4467889999998863   33347789999999986521  1    11111 2233444556999999999988766


Q ss_pred             h----hHHHHHHHHHhcCCcEEEEEecCCCCChHHH
Q 026538          190 P----RDHELISLMERSQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       190 ~----~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~  221 (237)
                      .    ....+++.+.  ++|+++|+||+|+.+....
T Consensus       328 ~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~  361 (476)
T 3gee_A          328 DDELTEIRELKAAHP--AAKFLTVANKLDRAANADA  361 (476)
T ss_dssp             GGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH
T ss_pred             hhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch
Confidence            6    4445555554  6899999999999866544

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.85  E-value=6.9e-21  Score=160.35  Aligned_cols=138  Identities=24%  Similarity=0.298  Sum_probs=103.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEc-CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ....|+++|.+|||||||+|+|++. ....+++.+++|++..   .... +..+.+|||||+.+........+.+.....
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~   87 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK   87 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence            4458999999999999999999998 5567788888887643   2233 678999999998764322333333434444


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhHHHH-HHHHHhcCCcEEEEEecCCCC-ChHHHHHHHHHHHHHH
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEEVI  232 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~-~~~l~~~~~piilv~NK~Dl~-~~~~~~~~~~~l~~~l  232 (237)
                      .++..   +|++++|+|++.+.+..+... ++.+...+.|+++|+||+|+. +........+.+.+.+
T Consensus        88 ~~l~~---aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~  152 (308)
T 3iev_A           88 QSLEE---ADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH  152 (308)
T ss_dssp             HHHHH---CSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC
T ss_pred             HHhhc---CCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhc
Confidence            44443   999999999998888877776 888888889999999999998 6666666666666554

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.85  E-value=1.5e-20  Score=157.79  Aligned_cols=122  Identities=22%  Similarity=0.281  Sum_probs=93.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|.+|||||||+|+|++. ....+++.+++|++..   ....+..+.+|||||+.++.  ..+.+.+......++
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~-~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~--~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM--DALGEFMDQEVYEAL   84 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC--SHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-ceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh--hHHHHHHHHHHHHHH
Confidence            47999999999999999999998 5566778888887632   22346789999999987642  223333333333444


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~  220 (237)
                         ..+|++++|+|++++++..+..+++.+...  +.|+++|+||+|+.....
T Consensus        85 ---~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~  134 (301)
T 1wf3_A           85 ---ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE  134 (301)
T ss_dssp             ---SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH
T ss_pred             ---hcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH
Confidence               449999999999888888777777888776  899999999999986554

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.83  E-value=4e-21  Score=169.69  Aligned_cols=172  Identities=22%  Similarity=0.249  Sum_probs=105.4

Q ss_pred             cceEEeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhc
Q 026538           35 RPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        35 ~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ++++... .+++.+||++ +++.............+.................  ...++|+++|++|+|||||+|+|++
T Consensus       171 ~l~~~~a-~iEa~iDf~e-d~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~--r~~~kV~ivG~~nvGKSSLln~L~~  246 (462)
T 3geh_A          171 NCLDILA-EIEARIDFEE-DLPPLDDEAIISDIENIAAEISQLLATKDKGELL--RTGLKVAIVGRPNVGKSSLLNAWSQ  246 (462)
T ss_dssp             HHHHHHH-HHHHHTTSSS-SSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHH--HHCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHH-HHHhhccccc-cCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--cCCCEEEEEcCCCCCHHHHHHHHhC
Confidence            3344433 7888999998 6665544433332222322222222111111101  1346899999999999999999999


Q ss_pred             ccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHH-HHHHHhccccccEEEEEEeCCCCCCh
Q 026538          115 QWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLIDTKWGVKP  190 (237)
Q Consensus       115 ~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~v~~vvd~~~~~~~  190 (237)
                      . ....+++.+++|++.   .+...+.++.+|||||+.+..  +.    +..+ +.........+|++++|+|++.++..
T Consensus       247 ~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~--~~----ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~  319 (462)
T 3geh_A          247 S-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS--DQ----VEKIGVERSRQAANTADLVLLTIDAATGWTT  319 (462)
T ss_dssp             H-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------------CCCCSCSEEEEEEETTTCSCH
T ss_pred             C-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch--hH----HHHHHHHHHhhhhhcCCEEEEEeccCCCCCH
Confidence            8 446688889998875   344457889999999986521  11    1111 23334455569999999999988888


Q ss_pred             hHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          191 RDHELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       191 ~~~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                      .+..+++.+..  .|+++|+||+|+.+..
T Consensus       320 ~~~~i~~~l~~--~piivV~NK~Dl~~~~  346 (462)
T 3geh_A          320 GDQEIYEQVKH--RPLILVMNKIDLVEKQ  346 (462)
T ss_dssp             HHHHHHHHHTT--SCEEEEEECTTSSCGG
T ss_pred             HHHHHHHhccC--CcEEEEEECCCCCcch
Confidence            87777777654  7999999999997543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.82  E-value=1.8e-20  Score=166.22  Aligned_cols=162  Identities=22%  Similarity=0.276  Sum_probs=104.8

Q ss_pred             cccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeec
Q 026538           42 AGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT  121 (237)
Q Consensus        42 ~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~  121 (237)
                      +.+++.+|||+| ++..... .......+.......+.........  ...++|+++|.+|||||||+|+|++. ....+
T Consensus       197 ~~ie~~idf~ee-i~~~~~~-i~~~~~~l~~eL~~l~~~~~~~~~~--r~~~kV~ivG~pnvGKSSLln~L~~~-~~a~v  271 (482)
T 1xzp_A          197 AEIRVELDYPDE-IETNTGE-VVTRLERIKEKLTEELKKADAGILL--NRGLRMVIVGKPNVGKSTLLNRLLNE-DRAIV  271 (482)
T ss_dssp             HHHHHHHHSTTT-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHCEEEEEECCHHHHTCHHHHHHHHH-TBCCC
T ss_pred             HHhhhcCCCCcc-ccchHHH-HHHHHHHHHHHHHHHHHhhhhhhhc--cCCCEEEEECcCCCcHHHHHHHHHCC-CCCcc
Confidence            357778999987 6643222 2222222222222222222111111  13469999999999999999999998 44678


Q ss_pred             cCCCCceEEEE---EEEcCCeEEEEeCCCCC-Ccccc---hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHH
Q 026538          122 SDKPGLTQTIN---FFKLGTKLCLVDLPGYG-FAYAK---EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE  194 (237)
Q Consensus       122 ~~~~g~t~~~~---~~~~~~~~~liDTpG~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~  194 (237)
                      ++.+++|++..   +...+..+.+|||||+. +....   ..+...+.     ++.   .+|++++|+|++.+.+..+.+
T Consensus       272 s~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~-----~~~---~aD~vl~VvD~s~~~s~~~~~  343 (482)
T 1xzp_A          272 TDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQ-----EIE---KADIVLFVLDASSPLDEEDRK  343 (482)
T ss_dssp             CCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHH-----HHH---HCSEEEEEEETTSCCCHHHHH
T ss_pred             CCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHH-----Hhh---cccEEEEEecCCCCCCHHHHH
Confidence            89999998752   33347789999999987 53211   11222222     222   299999999998877776666


Q ss_pred             HHHHHHhcCCcEEEEEecCCCCCh
Q 026538          195 LISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       195 ~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      +++.+  .++|+++|+||+|+.+.
T Consensus       344 il~~l--~~~piivV~NK~DL~~~  365 (482)
T 1xzp_A          344 ILERI--KNKRYLVVINKVDVVEK  365 (482)
T ss_dssp             HHHHH--TTSSEEEEEEECSSCCC
T ss_pred             HHHHh--cCCCEEEEEECcccccc
Confidence            66655  36899999999999743

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.81  E-value=1.4e-19  Score=159.38  Aligned_cols=119  Identities=23%  Similarity=0.340  Sum_probs=80.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      |+|+++|.+|||||||+|+|++. ..+.+++.+|+|++..   ....+..+.+|||||+.... .+.+...+......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP-QDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSG-GGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CCceecCCCCCccceeeEEEEECCeEEEEEECCCccccc-cchHHHHHHHHHHHHH
Confidence            68999999999999999999998 4567889999998753   23347789999999986421 1112222233333444


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      ..   +|++++|+|+..+++..+..+.+++...++|+++|+||+|+.
T Consensus        80 ~~---ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~  123 (439)
T 1mky_A           80 RE---ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL  123 (439)
T ss_dssp             TT---CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred             Hh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence            43   999999999998888888788888877789999999999985

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.81  E-value=1.2e-19  Score=159.64  Aligned_cols=119  Identities=20%  Similarity=0.350  Sum_probs=78.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|.+|||||||+|+|++. ..+.+.+.+|+|++......   +..+.+|||||+.....  .+...+......++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE--PFLAQIRQQAEIAM   80 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC-----------CHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch--hHHHHHHHHHHHHH
Confidence            79999999999999999999998 55678899999998765543   67799999999863211  12233333333444


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      ..   +|++++|+|+..+++..+.++.+.+...++|+++|+||+|+..
T Consensus        81 ~~---ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~  125 (436)
T 2hjg_A           81 DE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE  125 (436)
T ss_dssp             HH---CSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred             Hh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence            33   9999999999998888888888888888999999999999864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.80  E-value=8.1e-19  Score=145.26  Aligned_cols=141  Identities=21%  Similarity=0.268  Sum_probs=89.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccC-------CCCceEEEEEEE---cC--CeEEEEeCCCCCCcccc-hHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFK---LG--TKLCLVDLPGYGFAYAK-EEV  157 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-------~~g~t~~~~~~~---~~--~~~~liDTpG~~~~~~~-~~~  157 (237)
                      ..++|+++|.+|+|||||+|+|++.. ......       .++++.+.....   .+  ..+.+|||||+++.... ...
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTD-LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSC-C---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            34799999999999999999999874 222221       222222222111   12  37999999999764221 111


Q ss_pred             HHHH---HHHHHHHHhc----------cccccEEEEEEeC-CCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHH
Q 026538          158 KDAW---EELVKEYVST----------RVSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  223 (237)
Q Consensus       158 ~~~~---~~~~~~~~~~----------~~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~  223 (237)
                      ....   ..-...|+..          ...+|+++++++. .+++...+..+++.+.. ++|+++|+||+|+.+..+...
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~  164 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQ  164 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHH
Confidence            1111   1111333322          1126788888864 45888888899988887 899999999999998888877


Q ss_pred             HHHHHHHHHH
Q 026538          224 RAMQIEEVIF  233 (237)
Q Consensus       224 ~~~~l~~~l~  233 (237)
                      ..+.+.+.+.
T Consensus       165 ~~~~i~~~l~  174 (274)
T 3t5d_A          165 FKKQIMKEIQ  174 (274)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777766654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.80  E-value=2.8e-19  Score=153.61  Aligned_cols=193  Identities=20%  Similarity=0.140  Sum_probs=96.6

Q ss_pred             ccccccCCChhhhHHHHHhhcCCCcceEEeecccccccCCC--CCCCCCCChhHHHHHHHhhhh--hhhHHHHhh--hcc
Q 026538           11 AQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAP--LDNIPFSTSSERERIEENIFR--NKLEFFAAA--KVS   84 (237)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~--~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~   84 (237)
                      ++..++|+..+.+.+..+++ +.|..+....++    +++.  .+.   ....++..+..++..  ..+..+...  ..+
T Consensus       100 t~~~~~q~~la~l~~~~~rl-~~~~~l~~~~~~----i~~~g~ge~---~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r  171 (364)
T 2qtf_A          100 SKEAKMQIELARLKYELPII-KETYTKSKIGEQ----QGPLGAGTY---GVESTIKFYKRRINKLMKELESIKIFKEKSI  171 (364)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH-HHC----------------------------CHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             ccchhHHHHHHHHhhhchhh-hhhhHHHHhcCC----CCcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33346788899999999999 666554444332    3443  332   112223344444422  222222211  122


Q ss_pred             CCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHH
Q 026538           85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAW  161 (237)
Q Consensus        85 ~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~  161 (237)
                      ..+.+.+.+.|+++|++|||||||+|+|++..  ..+.+.+++|.+..   +...+..+.+|||||+......+.+ +.+
T Consensus       172 ~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lv-e~f  248 (364)
T 2qtf_A          172 ESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIV-DAF  248 (364)
T ss_dssp             -------CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGH-HHH
T ss_pred             HhhhhcCCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHH-HHH
Confidence            22333456679999999999999999999984  35667777776542   2233678999999997542222222 222


Q ss_pred             HHHHHHHHhccccccEEEEEEeCCCCC--ChhH----HHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          162 EELVKEYVSTRVSLKRVCLLIDTKWGV--KPRD----HELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       162 ~~~~~~~~~~~~~~d~v~~vvd~~~~~--~~~~----~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      ....    .....+|++++|+|++++.  ....    ..+++.+...+.|+++|+||+|+.+.
T Consensus       249 ~~tl----~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~  307 (364)
T 2qtf_A          249 FVTL----SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING  307 (364)
T ss_dssp             HHHH----HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred             HHHH----HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence            2222    2334489999999987653  1111    12233333346899999999999864

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.80  E-value=4e-20  Score=151.75  Aligned_cols=121  Identities=23%  Similarity=0.198  Sum_probs=86.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|.+|||||||+|+|++..  ..+++.+|+|.+...   ...+..+.+|||||+...............+...|+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            689999999999999999999984  567788888866533   224678999999998653221000011123344454


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      .. ..+|++++|+|++..  .....+..++...++|+++|+||+|+...
T Consensus        80 ~~-~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~  125 (256)
T 3iby_A           80 ID-LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEH  125 (256)
T ss_dssp             HH-SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred             hh-CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence            32 349999999998752  44556777777789999999999998643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.80  E-value=3.6e-19  Score=134.68  Aligned_cols=119  Identities=24%  Similarity=0.288  Sum_probs=80.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|.+|+|||||+|+|++. ........+++|.+...   ...+..+.+|||||......   ....+......++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~   77 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK-RSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRAL   77 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC-CC-----------CCEEEEEEETTEEEEEEECGGGCSSSS---CCHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hHHHHHHHHHHHH
Confidence            68999999999999999999988 33445566666655432   23466899999999765221   1111222223333


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      .   .+|++++|+|+..+++.....+.+.+...+.|+++|+||+|+...
T Consensus        78 ~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  123 (161)
T 2dyk_A           78 E---DAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH  123 (161)
T ss_dssp             T---TCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred             H---hCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence            3   389999999998887777777777777778999999999999754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.80  E-value=2.3e-19  Score=158.73  Aligned_cols=121  Identities=21%  Similarity=0.357  Sum_probs=81.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|||||||+|+|++. ....+.+.+|+|++......   +..+.+|||||+...  .+...+.+......
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG--DEPFLAQIRQQAEI   98 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc--chHHHHHHHHHHHh
Confidence            4589999999999999999999998 55678889999998766553   678999999998642  22223333344444


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|+..+++..+.++.+.+...++|+++|+||+|+..
T Consensus        99 ~~~~---ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~  145 (456)
T 4dcu_A           99 AMDE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE  145 (456)
T ss_dssp             HHHH---CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC----
T ss_pred             hHhh---CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchh
Confidence            4443   9999999999989999999999999888999999999999864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.79  E-value=3.5e-19  Score=144.37  Aligned_cols=128  Identities=17%  Similarity=0.192  Sum_probs=77.4

Q ss_pred             CCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCC--CceEEEE---EEEcCCeEEEEeCCCCCCcccc-hHHHHHHH
Q 026538           89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP--GLTQTIN---FFKLGTKLCLVDLPGYGFAYAK-EEVKDAWE  162 (237)
Q Consensus        89 ~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~--g~t~~~~---~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~  162 (237)
                      ....++|+++|.+|||||||+|+|++...  ..+..+  ++|.+..   ....+..+.||||||+.+.... ....   .
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~---~  100 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKV--FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETS---K  100 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCC--SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHH---H
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCc--CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHH---H
Confidence            34568999999999999999999999842  233333  4554432   3334678999999998764221 2222   2


Q ss_pred             HHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHH-----hcCCcEEEEEecCCCCChHHHH
Q 026538          163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVA  222 (237)
Q Consensus       163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~-----~~~~piilv~NK~Dl~~~~~~~  222 (237)
                      .+...+......+|++++|+|+.. +...+..++..+.     ....|+++|+||+|+....++.
T Consensus       101 ~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~  164 (239)
T 3lxx_A          101 EIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLH  164 (239)
T ss_dssp             HHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------
T ss_pred             HHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHH
Confidence            333334444456899999999874 4455555555543     2346999999999998765554

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.79  E-value=1.7e-18  Score=139.21  Aligned_cols=124  Identities=18%  Similarity=0.140  Sum_probs=79.8

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ...++|+++|.+|||||||+|+|++.. . ...+.+++|++.....   .+..+.+|||||+.+....+.....+.. +.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRAN-V-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT-IT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTC-E-EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC-C-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence            456899999999999999999999984 2 3566777777765433   3568999999998542111110000111 22


Q ss_pred             HHHhccccccEEEEEEeCCCCCCh---hHHHHHHHHHhc--CCcEEEEEecCCCCChH
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKP---RDHELISLMERS--QTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~---~~~~~~~~l~~~--~~piilv~NK~Dl~~~~  219 (237)
                      .+..   .+|++++|+|++...+.   ....++..+...  +.|+++|+||+|+....
T Consensus       104 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~  158 (228)
T 2qu8_A          104 ALAH---INGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD  158 (228)
T ss_dssp             HHHT---SSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred             Hhhc---cccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence            2222   37999999998865432   234566666664  79999999999997643

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.79  E-value=6.8e-20  Score=151.82  Aligned_cols=122  Identities=20%  Similarity=0.161  Sum_probs=85.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|.+|||||||+|+|++..  ..+++.+|+|.+....   ..+..+.+|||||+.+.............+...|
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            3699999999999999999999984  5778888988765432   2467899999999765321100000111223333


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      +. ...+|++++|+|++..  .....+..++...++|+++|+||+|+...
T Consensus        81 ~~-~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~  127 (274)
T 3i8s_A           81 IL-SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEK  127 (274)
T ss_dssp             HH-HTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHH
T ss_pred             Hh-hcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhh
Confidence            32 2349999999998752  44456667777779999999999998643

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.79  E-value=2.1e-18  Score=136.49  Aligned_cols=144  Identities=40%  Similarity=0.571  Sum_probs=91.1

Q ss_pred             CCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        89 ~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .....+|+++|++|||||||+|+|++......+.+.+|+|........+..+.+|||||+..........+.|...+..|
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  102 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY  102 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence            34567999999999999999999998843445567777776554443334789999999864211111123344555556


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                      +.....++.+++++|...+....+..+..++...+.|+++|.||+|+.+..+.+.....+++.+
T Consensus       103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~  166 (210)
T 1pui_A          103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV  166 (210)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHH
Confidence            6555568999999999877666555666777777899999999999987665444344444443

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.79  E-value=1.9e-19  Score=158.39  Aligned_cols=138  Identities=21%  Similarity=0.279  Sum_probs=90.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccc-hHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELV  165 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~  165 (237)
                      ...++|+++|.+|||||||+|+|++. ....+++.+|+|++.   .+...+..+.||||||+...... +.++ .+..+.
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e-~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTE-KYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCS-HHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHH-HHHHHH
Confidence            35689999999999999999999998 445678889999886   33445678999999997542110 0011 111110


Q ss_pred             -HHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHH--HHHHHHHHHHHH
Q 026538          166 -KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEEVI  232 (237)
Q Consensus       166 -~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~--~~~~~~~l~~~l  232 (237)
                       ..++.   .+|++++|+|++.+.+.++..++..+...++|+++|+||+|+.+..+  ..+..+.+.+.+
T Consensus       251 ~~~~~~---~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l  317 (436)
T 2hjg_A          251 ALKAID---RSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF  317 (436)
T ss_dssp             HHHHHH---HCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHC
T ss_pred             HHHHHH---hCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhc
Confidence             11222   28999999999999888888888888888999999999999986433  233444444443

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.78  E-value=3e-18  Score=133.10  Aligned_cols=124  Identities=28%  Similarity=0.485  Sum_probs=85.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccc-hHHHHHHHHHHHHHHhc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVKEYVST  171 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~~~~~  171 (237)
                      ++|+++|.+|||||||+|+|++..  ......+++|.+......+ .+.+|||||+...... ....+.+..+...|+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~   78 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED   78 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcC--CccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999884  4455667777665544444 7999999997543211 11234455556666665


Q ss_pred             -cccccEEEEEEeCCCC-----------CChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          172 -RVSLKRVCLLIDTKWG-----------VKPRDHELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       172 -~~~~d~v~~vvd~~~~-----------~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                       ...++++++|+|....           ....+..+...+...++|+++|+||+|+....
T Consensus        79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (190)
T 2cxx_A           79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV  138 (190)
T ss_dssp             HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred             hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence             6668899999997531           11122334455556689999999999998654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=2.4e-18  Score=142.12  Aligned_cols=123  Identities=21%  Similarity=0.173  Sum_probs=84.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|.+|+|||||+|+|++. ....+++.+++|.+.   .....+..+.+|||||+.+.....   ..+...+..|
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~---~~~~~~i~~~  114 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN---DMALNIIKSF  114 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEEC---HHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccch---HHHHHHHHHH
Confidence            479999999999999999999988 444566666766543   333446789999999986532111   1111222333


Q ss_pred             HhccccccEEEEEEeCCC-CCChhHHHHHHHHHhc-C----CcEEEEEecCCCCChH
Q 026538          169 VSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPI  219 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~-~----~piilv~NK~Dl~~~~  219 (237)
                      +. ...+|+++||+|... .+...+..+++.+... +    .|+++|+||+|+.+++
T Consensus       115 ~~-~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          115 LL-DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TT-TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             hh-cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            32 234899999988643 4666666777766543 2    6999999999998654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.78  E-value=1.5e-18  Score=133.68  Aligned_cols=118  Identities=26%  Similarity=0.285  Sum_probs=80.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHH-HHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDA-WEELVKE  167 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~-~~~~~~~  167 (237)
                      ..+|+++|.+|||||||+|+|++. ....+++.+++|.+..   +...+..+.+|||||+....  ...+.. .... ..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~-~~   79 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS--DEVERIGIERA-WQ   79 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS--SHHHHHHHHHH-HH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccch--hHHHHHHHHHH-HH
Confidence            468999999999999999999987 3345667777776542   22335679999999986521  111110 1111 11


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc---CCcEEEEEecCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS---QTKYQVVLTKTDTV  216 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~---~~piilv~NK~Dl~  216 (237)
                      ++   ..+|++++|+|++...+.....++..+...   ++|+++|+||+|+.
T Consensus        80 ~~---~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  128 (172)
T 2gj8_A           80 EI---EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT  128 (172)
T ss_dssp             HH---HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred             HH---HhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence            22   238999999998876555555555555432   68999999999984

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.77  E-value=2.8e-18  Score=143.94  Aligned_cols=130  Identities=24%  Similarity=0.254  Sum_probs=93.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCC-CcccchHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYG-FAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~-~~~~~~~~~~~~~~~~~~~  168 (237)
                      .+|+++|++|||||||+|+|++. ....+++.+++|++..   +...+..+.+|||||+. .+  ....   -..+....
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~-~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~--~~~l---~~~~~~~~   82 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAI---NRLMNKAA   82 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHH---HHHHTCCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC-CccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc--hhhH---HHHHHHHH
Confidence            48999999999999999999998 5567788888886432   22346679999999985 21  0000   01111122


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC-hHHHHHHHHHHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIE  229 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~-~~~~~~~~~~l~  229 (237)
                      ......+|++++|+|+.. ++..+..+++.+...+.|+++|+||+|+.. .....+..+.+.
T Consensus        83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~  143 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLA  143 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHH
Confidence            334556899999999987 888887788878777899999999999987 444444444443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.77  E-value=1.8e-18  Score=152.94  Aligned_cols=138  Identities=21%  Similarity=0.272  Sum_probs=93.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ...++|+++|.+|+|||||+|+|++. ....+++.+|+|.+.   .+...+..+.+|||||+..........+.+..+..
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  271 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  271 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence            45689999999999999999999987 346788889998874   44445778999999997643111000011111111


Q ss_pred             -HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH--HHHHHHHHHHHH
Q 026538          167 -EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI--DVARRAMQIEEV  231 (237)
Q Consensus       167 -~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~~~  231 (237)
                       .++.   .+|++++|+|+..++...+..++..+...++|+++|+||+|+.+..  ...+..+.+++.
T Consensus       272 ~~~~~---~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~  336 (456)
T 4dcu_A          272 LKAID---RSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDH  336 (456)
T ss_dssp             HHHHH---HCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHH
T ss_pred             HHHHh---hCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHh
Confidence             1222   2899999999999999999999998888899999999999997532  233444444444

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.76  E-value=8.9e-18  Score=140.17  Aligned_cols=127  Identities=20%  Similarity=0.255  Sum_probs=86.3

Q ss_pred             CCCCCEEEEecCCCCchhhHHHHHhccccee-----eccCCCC----------------------ceEE-----------
Q 026538           89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPG----------------------LTQT-----------  130 (237)
Q Consensus        89 ~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~-----~~~~~~g----------------------~t~~-----------  130 (237)
                      ....++|+++|.+|||||||+|+|++.. ..     .++..|+                      +|.+           
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~-~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~  101 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD  101 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSC-CSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCC-cCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence            3467899999999999999999999984 22     2333443                      2221           


Q ss_pred             ---------------EEEEEc-CCeEEEEeCCCCCCccc---chHHHHHHHHHHHHHHhccccccEE-EEEEeCCCCCCh
Q 026538          131 ---------------INFFKL-GTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRV-CLLIDTKWGVKP  190 (237)
Q Consensus       131 ---------------~~~~~~-~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v-~~vvd~~~~~~~  190 (237)
                                     +..... ...+.||||||+.....   .+.....+..+...|+..   ++.+ ++|+|++.++..
T Consensus       102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~il~v~d~~~~~~~  178 (299)
T 2aka_B          102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK---ENCLILAVSPANSDLAN  178 (299)
T ss_dssp             HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS---TTEEEEEEEESSSCGGG
T ss_pred             HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC---CCeEEEEEecCCcchhh
Confidence                           011111 36899999999875321   233334556666677664   5544 579999877666


Q ss_pred             hHH-HHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          191 RDH-ELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       191 ~~~-~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                      .+. .+++.+...+.|+++|+||+|+.+..
T Consensus       179 ~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~  208 (299)
T 2aka_B          179 SDALKIAKEVDPQGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             CHHHHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred             hHHHHHHHHhCCCCCeEEEEEEccccCCCC
Confidence            653 56777776789999999999997543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.75  E-value=2.6e-18  Score=141.05  Aligned_cols=117  Identities=26%  Similarity=0.291  Sum_probs=84.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|.+|||||||+|+|++..  ..++..+|+|.+....   ..+..+.+|||||+....... ..   ..+...|
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~--~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~---e~v~~~~   78 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTK--QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS-ID---EKIARDY   78 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS-HH---HHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC-HH---HHHHHHH
Confidence            4689999999999999999999984  3467778888765432   236789999999976432111 01   1233344


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      +.. ..+|++++|+|++..  .....+...+...++|+++|+||+|+..
T Consensus        79 ~~~-~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~  124 (258)
T 3a1s_A           79 LLK-GDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAK  124 (258)
T ss_dssp             HHH-SCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred             Hhh-cCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence            432 348999999998853  3445566777777999999999999853

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.75  E-value=2.1e-17  Score=148.95  Aligned_cols=135  Identities=21%  Similarity=0.307  Sum_probs=93.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccccee--eccCCCCceEEEEEEEc-------------------------C-----
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFKL-------------------------G-----  137 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~--~~~~~~g~t~~~~~~~~-------------------------~-----  137 (237)
                      ...++|+|+|.+|+|||||+|+|++. ...  .++..++|++...+...                         +     
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~-~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQ-EVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTS-CCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC-ccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            46789999999999999999999998 332  45666666543221110                         0     


Q ss_pred             ------------CeEEEEeCCCCCCcccchHHHHH--HHHHHHHHHhccccccEEEEEEeCCC-CCChhHHHHHHHHHhc
Q 026538          138 ------------TKLCLVDLPGYGFAYAKEEVKDA--WEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS  202 (237)
Q Consensus       138 ------------~~~~liDTpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~  202 (237)
                                  ..+.||||||+.+.... .+.+.  +......++..   +|++++|+|+.. +....+..+++.+...
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~-~~~~~~~f~~~~~~~l~~---aD~il~VvDa~~~~~~~~~~~~l~~l~~~  217 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQ-RVSRGYDFPAVLRWFAER---VDLIILLFDAHKLEISDEFSEAIGALRGH  217 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC--------CCSCHHHHHHHHHHH---CSEEEEEEETTSCCCCHHHHHHHHHTTTC
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchh-HHHHHhhHHHHHHHHHHh---CCEEEEEEeCCcCCCCHHHHHHHHHHHhc
Confidence                        25899999998752110 01000  22233333333   899999999976 4677778888888877


Q ss_pred             CCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          203 QTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       203 ~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                      +.|+++|+||+|+.+.+++.+....+.
T Consensus       218 ~~pvilVlNK~Dl~~~~el~~~~~~l~  244 (550)
T 2qpt_A          218 EDKIRVVLNKADMVETQQLMRVYGALM  244 (550)
T ss_dssp             GGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCccCHHHHHHHHHHhh
Confidence            899999999999998888777766665

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.75  E-value=1.6e-17  Score=131.86  Aligned_cols=126  Identities=18%  Similarity=0.316  Sum_probs=80.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHH-HH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEE-LV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~-~~  165 (237)
                      ..++|+++|.+|||||||+++|++..   .....++++.+......    +..+.+|||||...          +.. +.
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~   72 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES----------LRFQLL   72 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSC---CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHH----------HHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC---cccccCCcceeeEEEEecCCCccEEEEEECCCChh----------HHHHHH
Confidence            45799999999999999999999874   22223333333322222    46799999999632          122 34


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhHHH----HHHHHH-----hcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHE----LISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~----~~~~l~-----~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      ..|+..   +|++++|+|+.. .......    +...+.     ..++|+++|+||+|+..........+.+.+.+.
T Consensus        73 ~~~~~~---~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~  145 (214)
T 2fh5_B           73 DRFKSS---ARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELN  145 (214)
T ss_dssp             HHHGGG---EEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHhh---CCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence            445444   899999999875 1111222    222222     236899999999999866555556666665554

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.75  E-value=1.1e-17  Score=137.26  Aligned_cols=125  Identities=16%  Similarity=0.127  Sum_probs=82.4

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC-ceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ...++|+|+|.+|||||||+|+|++.. ....+..+. +|.+.   .....+..+.||||||+.+.....  ......+.
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~--~~~~~~i~   96 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQ-AFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC--EALYKEVQ   96 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSC-CSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC--HHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH--HHHHHHHH
Confidence            355799999999999999999999883 233333333 45443   233346789999999986542211  11112222


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc-----CCcEEEEEe-cCCCCCh
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT-KTDTVFP  218 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~N-K~Dl~~~  218 (237)
                      ..+......+|++++|+|+.. +...+..+++.+...     ..|+++|+| |+|+...
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~  154 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG  154 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred             HHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence            222223345999999999885 667666666666654     568888777 9999743

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.75  E-value=2.3e-17  Score=138.73  Aligned_cols=127  Identities=22%  Similarity=0.300  Sum_probs=80.8

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccce----eeccCCCC---ceEE--------------------------------
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTSDKPG---LTQT--------------------------------  130 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~----~~~~~~~g---~t~~--------------------------------  130 (237)
                      ...|+|+|+|.+|+|||||+|+|++....    ..++..|+   +++.                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            46789999999999999999999998321    22333342   2221                                


Q ss_pred             ---------------------EEEEE-cCCeEEEEeCCCCCCccc---chHHHHHHHHHHHHHHhccccccEEEEEEeC-
Q 026538          131 ---------------------INFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDT-  184 (237)
Q Consensus       131 ---------------------~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~-  184 (237)
                                           +.+.. .+..+.+|||||+.....   .......+......|+..   +|++++|+|+ 
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~iilvvd~~  178 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTPA  178 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEES
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcC---CCeEEEEEEec
Confidence                                 00111 246799999999864210   112233344455555554   8999999996 


Q ss_pred             CCCCChhH-HHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          185 KWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       185 ~~~~~~~~-~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                      ..++...+ ..+++.+...+.|+++|+||+|+....
T Consensus       179 ~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~  214 (315)
T 1jwy_B          179 NTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG  214 (315)
T ss_dssp             SSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred             CcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcc
Confidence            55555444 467777777789999999999997543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.74  E-value=5.4e-18  Score=132.32  Aligned_cols=133  Identities=21%  Similarity=0.226  Sum_probs=81.0

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccccee-eccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-RTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~-~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ...++|+++|.+|||||||+|+|++..... ..+..++++.+.    .+..+.+|||||+......      +...+...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~------~~~~~~~~  115 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLRYK------LSDYLKTR  115 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSSCC------HHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHHHH------HHHHHHhh
Confidence            456899999999999999999999874211 112223233222    4677999999997642111      12222222


Q ss_pred             HhccccccEEEEEEeCC-CCCCh-hHHHHH-HHHH------hcCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 026538          169 VSTRVSLKRVCLLIDTK-WGVKP-RDHELI-SLME------RSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYL  235 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~-~~~~~-~~~~~~-~~l~------~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~~  235 (237)
                      .   ..+|++++|+|++ ..-.. ....++ ..+.      ..+.|+++|+||+|+.......+..+.+.+.++.+
T Consensus       116 ~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~l  188 (193)
T 2ged_A          116 A---KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKV  188 (193)
T ss_dssp             G---GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHH
T ss_pred             c---ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHHH
Confidence            2   3389999999987 21111 111222 2221      13799999999999987777777777777766543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.74  E-value=2e-17  Score=131.67  Aligned_cols=125  Identities=20%  Similarity=0.232  Sum_probs=77.1

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeec--cCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~--~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...++|+++|++|+|||||+|+|++... ...  +..+.++.+    ..+..+.+|||||+...      ...+..+...
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~----~~~~~~~l~Dt~G~~~~------~~~~~~~~~~   78 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQEPLSAAD----YDGSGVTLVDFPGHVKL------RYKLSDYLKT   78 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSC-CCBCCCSSCEEETT----GGGSSCEEEECCCCGGG------THHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCeeeecCceEEEE----eeCceEEEEECCCcHHH------HHHHHHHHHh
Confidence            4568999999999999999999998741 111  122222211    14667999999997531      1122222221


Q ss_pred             HHhccccccEEEEEEeCC-C--CCChhHHHHHHHHHh------cCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538          168 YVSTRVSLKRVCLLIDTK-W--GVKPRDHELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQI  228 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~-~--~~~~~~~~~~~~l~~------~~~piilv~NK~Dl~~~~~~~~~~~~l  228 (237)
                      .   ...+|++++|+|+. .  .+......+...+..      .++|+++|+||+|+..........+.+
T Consensus        79 ~---~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l  145 (218)
T 1nrj_B           79 R---AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL  145 (218)
T ss_dssp             H---GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             c---cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHH
Confidence            1   22379999999987 2  333333333333322      479999999999998655444333333

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.74  E-value=5.5e-18  Score=129.32  Aligned_cols=113  Identities=20%  Similarity=0.186  Sum_probs=73.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ..++|+++|.+|+|||||+|+|++.. .....+..+.+.. .+...+..+.+|||||....          ......++ 
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~-   72 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVE-TVTYKNLKFQVWDLGGLTSI----------RPYWRCYY-   72 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSEEEE-EEEETTEEEEEEEECCCGGG----------GGGGGGGC-
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC-CCCcCCcCccceE-EEEECCEEEEEEECCCChhh----------hHHHHHHh-
Confidence            45799999999999999999999873 2222222232221 22234678999999997431          11122222 


Q ss_pred             ccccccEEEEEEeCCCCCCh--hHHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                        ..+|++++|+|++...+.  ....+...+..   .+.|+++|+||+|+.+.
T Consensus        73 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  123 (171)
T 1upt_A           73 --SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA  123 (171)
T ss_dssp             --TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             --ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence              238999999998765332  22223333332   47899999999999765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.74  E-value=1.9e-17  Score=129.95  Aligned_cols=123  Identities=14%  Similarity=0.091  Sum_probs=74.4

Q ss_pred             CCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      +....++|+++|.+|||||||+|++.+............++......   .....+.+|||||...-....     |.  
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----~~--   88 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT-----FD--   88 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT-----CC--
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh-----hh--
Confidence            33456899999999999999999998863111111111122222222   234789999999965311000     00  


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHh-----cCCcEEEEEecCCCCChHH
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~~~  220 (237)
                      ...|+..   +|++++|+|+...+......+..++..     .+.|+++|+||+|+.+...
T Consensus        89 ~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~  146 (196)
T 3llu_A           89 YEMIFRG---TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDH  146 (196)
T ss_dssp             HHHHHHT---CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHH
T ss_pred             ccccccc---CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhh
Confidence            0233333   999999999887633333444444433     3789999999999987543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.74  E-value=3e-17  Score=134.98  Aligned_cols=121  Identities=21%  Similarity=0.193  Sum_probs=82.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|.+|+|||||+|+|++. ....+++.+++|...   .+...+..+.||||||+.+.....   +.+...+..+
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~---~~~~~~i~~~  111 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN---HQALELIKGF  111 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTS-CCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC---HHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch---HHHHHHHHHH
Confidence            479999999999999999999998 444566667666543   233447789999999986532211   1122223333


Q ss_pred             HhccccccEEEEEEeCCC-CCChhHHHHHHHHHhc-----CCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~-----~~piilv~NK~Dl~~  217 (237)
                      +. ...+|++++|++... .+...+..+++.+...     ..|+++|+||+|+.+
T Consensus       112 l~-~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          112 LV-NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             TT-TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             Hh-cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence            32 234899999987643 4566666777766653     249999999999963

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.74  E-value=3.4e-18  Score=141.35  Aligned_cols=117  Identities=21%  Similarity=0.264  Sum_probs=83.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .++|+++|.+|||||||+|+|++..  ..+++.+|+|.+......  +..+.+|||||...-.... .   ...+...|+
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~-~---~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYS-P---EAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSS-H---HHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCC-h---HHHHHHHHH
Confidence            4689999999999999999999974  457778888876433322  5689999999976421111 1   123344455


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      .. ..+|++++|+|++..  .....+...+...++|+++|+||+|+..
T Consensus        77 ~~-~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~  121 (272)
T 3b1v_A           77 LS-QRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLD  121 (272)
T ss_dssp             HT-TCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred             hc-CCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence            43 348999999998752  3334555666667899999999999853

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.73  E-value=8.3e-18  Score=131.67  Aligned_cols=115  Identities=16%  Similarity=0.193  Sum_probs=75.2

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeec--cCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~--~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...++|+++|.+|||||||+|+|++.. ...+  .+..+.+.. .+...+..+.+|||||....          ..+...
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~----------~~~~~~   82 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQ-SSSKHITATVGYNVE-TFEKGRVAFTVFDMGGAKKF----------RGLWET   82 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC-----CCCCCSSEEEE-EEEETTEEEEEEEECCSGGG----------GGGGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCC-CcccccccccceeEE-EEEeCCEEEEEEECCCCHhH----------HHHHHH
Confidence            456799999999999999999999984 2332  344443322 23345778999999997531          112222


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc-----------CCcEEEEEecCCCCChH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-----------QTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~-----------~~piilv~NK~Dl~~~~  219 (237)
                      |+   ..+|++++|+|++...+... ..++..+...           ++|+++|+||+|+....
T Consensus        83 ~~---~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~  143 (199)
T 4bas_A           83 YY---DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK  143 (199)
T ss_dssp             GC---TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC
T ss_pred             HH---hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC
Confidence            33   23999999999986532222 2334333332           78999999999998663

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.73  E-value=2.6e-18  Score=158.88  Aligned_cols=117  Identities=18%  Similarity=0.202  Sum_probs=82.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCc--------------eEEE-------------------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--------------TQTI-------------------------  131 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~--------------t~~~-------------------------  131 (237)
                      ..++|+|+|.+|+|||||+|+|+|. ...+++..|+|              |.+.                         
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~-~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGE-NLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTS-SCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            4579999999999999999999998 55666666766              3221                         


Q ss_pred             -----------------EEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCCh
Q 026538          132 -----------------NFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP  190 (237)
Q Consensus       132 -----------------~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~  190 (237)
                                       .++..    ...+.||||||+.+...       .......|+..   +|++++|+|++.+++.
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i~~---aD~vL~Vvda~~~~s~  216 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYVNN---CHAILFVMRASQPCTL  216 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHHHS---SSEEEEEEETTSTTCH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHHHh---CCEEEEEEeCCCccch
Confidence                             00000    04699999999764211       11233344433   9999999999888777


Q ss_pred             hHHHHHH-HHHhcCCcEEEEEecCCCCCh
Q 026538          191 RDHELIS-LMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       191 ~~~~~~~-~l~~~~~piilv~NK~Dl~~~  218 (237)
                      .+...+. .+...+.|+++|+||+|+...
T Consensus       217 ~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          217 GERRYLENYIKGRGLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             HHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred             hHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence            7766553 555567899999999998754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.73  E-value=3.2e-17  Score=144.30  Aligned_cols=126  Identities=29%  Similarity=0.398  Sum_probs=84.0

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccch-HHHHHHHHH-
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEEL-  164 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~-  164 (237)
                      ...++|+++|++|||||||+|+|++. ....+++.+|+|++.   .+...+..+.+|||||+....... ...+.+... 
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence            35679999999999999999999998 446789999999875   333457789999999974311000 000000000 


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                      ...++   ..+|++++++|+..+.+..+..+...+...+.|+++|+||+|+....
T Consensus       257 ~~~~i---~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~  308 (439)
T 1mky_A          257 VVDSI---EKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHR  308 (439)
T ss_dssp             HHHHH---HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred             HHHHH---hhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCch
Confidence            01122   22899999999988887777777777777899999999999997643

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.73  E-value=6.7e-18  Score=129.79  Aligned_cols=114  Identities=22%  Similarity=0.282  Sum_probs=81.8

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ...++|+++|.+|||||||+|+|++..  ......+++|.+.   .+...+..+.+|||||.......          . 
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~-   72 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSK--VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTM----------R-   72 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTC--SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCS----------C-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCc--cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHH----------H-
Confidence            456899999999999999999999873  2223333333322   23334677999999997542110          1 


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                        ......+|++++|+|+..+......+.+..+...++|+++|+||+|+...
T Consensus        73 --~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~  122 (178)
T 2lkc_A           73 --ARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA  122 (178)
T ss_dssp             --CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred             --HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC
Confidence              12223489999999988777777777777777778999999999999753

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.73  E-value=4.6e-18  Score=140.46  Aligned_cols=117  Identities=24%  Similarity=0.269  Sum_probs=83.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|++|||||||+|+|++..  ..++..+++|.+...   ...+..+.+|||||+........ .   ..+...|
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~---~~~~~~~   76 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLR--QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSI-D---ELIARNF   76 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTC--EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCH-H---HHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCH-H---HHHHHHh
Confidence            4699999999999999999999984  367778888776532   23467799999999765222111 1   1223344


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcC-CcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~piilv~NK~Dl~~  217 (237)
                      +. ...+|++++|+|++..  .....+...+...+ .|+++|+||+|+..
T Consensus        77 ~~-~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  123 (271)
T 3k53_A           77 IL-DGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLK  123 (271)
T ss_dssp             HH-TTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred             hh-ccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence            43 2349999999998753  34445555566666 99999999999754

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.73  E-value=5.9e-17  Score=142.51  Aligned_cols=115  Identities=19%  Similarity=0.250  Sum_probs=81.2

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccccee-----------------------------eccCCCCceEEEEEEE---cC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFK---LG  137 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~-----------------------------~~~~~~g~t~~~~~~~---~~  137 (237)
                      ...++|+++|.+|+|||||+|+|+......                             .....+|+|.+.....   .+
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            355799999999999999999997542100                             0112256777764432   36


Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCC-------hhHHHHHHHHHhcCCc-EEEE
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQTK-YQVV  209 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~-------~~~~~~~~~l~~~~~p-iilv  209 (237)
                      ..+.+|||||+.+             +..........+|++++|+|+..+..       .+..+.+..+...++| +++|
T Consensus        95 ~~~~iiDTPGh~~-------------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvv  161 (439)
T 3j2k_7           95 KHFTILDAPGHKS-------------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVL  161 (439)
T ss_pred             eEEEEEECCChHH-------------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEE
Confidence            7899999999742             12222222233999999999988754       4566777777777888 9999


Q ss_pred             EecCCCCC
Q 026538          210 LTKTDTVF  217 (237)
Q Consensus       210 ~NK~Dl~~  217 (237)
                      +||+|+..
T Consensus       162 iNK~Dl~~  169 (439)
T 3j2k_7          162 INKMDDPT  169 (439)
T ss_pred             eecCCCcc
Confidence            99999964

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.73  E-value=1.5e-17  Score=128.97  Aligned_cols=113  Identities=18%  Similarity=0.235  Sum_probs=76.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ..++|+++|++|||||||+|+|++. ......+..|.+... +...+..+.+|||||...      .    ......|+.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~~-~~~~~~~l~i~Dt~G~~~------~----~~~~~~~~~   82 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKS-VQSQGFKLNVWDIGGQRK------I----RPYWRSYFE   82 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEE-EEETTEEEEEEECSSCGG------G----HHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEEE-EEECCEEEEEEECCCCHH------H----HHHHHHHhC
Confidence            4579999999999999999999988 434445555544322 222377899999999643      1    222334444


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHH-H---hcCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~---~~~~piilv~NK~Dl~~~  218 (237)
                      .   +|++++|+|++...+... ..++..+ .   ..+.|+++|+||+|+...
T Consensus        83 ~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  132 (181)
T 1fzq_A           83 N---TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA  132 (181)
T ss_dssp             T---CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred             C---CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence            3   999999999875422221 2233322 2   246899999999999754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.73  E-value=3.1e-17  Score=137.93  Aligned_cols=122  Identities=18%  Similarity=0.154  Sum_probs=81.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .++|+++|.+|||||||+|+|++. .....+..+++|.+..+..    .+..+.+|||||...-     ...........
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~   76 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDH   76 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHH
Confidence            369999999999999999999987 3344556677777664432    3567999999996320     11111223334


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHH-HHHHHHHh-----cCCcEEEEEecCCCCChHHHH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER-----SQTKYQVVLTKTDTVFPIDVA  222 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~-----~~~piilv~NK~Dl~~~~~~~  222 (237)
                      ++..   +|++++|+|+++..+..+. .+..++..     .++|+++|+||+|+..+.+..
T Consensus        77 ~~~~---ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~  134 (307)
T 3r7w_A           77 IFQM---VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKRE  134 (307)
T ss_dssp             HHTT---CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH
T ss_pred             Hhcc---CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhh
Confidence            4443   9999999999875443332 23333322     279999999999998754443

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.73  E-value=2.8e-17  Score=124.61  Aligned_cols=111  Identities=17%  Similarity=0.167  Sum_probs=71.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      .+|+++|.+|||||||+|+|++.. .....+..+... ..+...+..+.+|||||...          +..+...++.. 
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~-   67 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQN-   67 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHC-SSCCCCCSSCCE-EEEECSSCEEEEEECCCCGG----------GHHHHHHHTTT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC-cCcccCcCceeE-EEEEECCEEEEEEEcCCChh----------hHHHHHHHhcc-
Confidence            479999999999999999999873 222222222111 12223468899999999743          12233344433 


Q ss_pred             ccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538          173 VSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~  218 (237)
                        +|++++|+|++.+.+... ..++..+..    .+.|+++|+||+|+...
T Consensus        68 --~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  116 (164)
T 1r8s_A           68 --TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA  116 (164)
T ss_dssp             --CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             --CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence              999999999876422211 233333322    37899999999999764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.72  E-value=7.5e-18  Score=128.68  Aligned_cols=115  Identities=30%  Similarity=0.335  Sum_probs=74.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|++|||||||+|+|++..  ...+..+++|.+.   .+...+..+.+|||||.........    ...+...|+
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----~~~~~~~~~   77 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI----DEIIARDYI   77 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS--SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH----HHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch----hHHHHHHHH
Confidence            589999999999999999999873  2345556655442   1222467899999999764211110    112333444


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      .. ..++++++|+|+...  .....++..+...+.|+++|+||+|+.
T Consensus        78 ~~-~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~  121 (165)
T 2wji_A           78 IN-EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA  121 (165)
T ss_dssp             HH-HCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred             hc-CCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence            32 238999999998742  223445556666689999999999985

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.72  E-value=2.9e-17  Score=124.76  Aligned_cols=113  Identities=15%  Similarity=0.059  Sum_probs=65.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .++|+++|.+|||||||+|+|++. ......+.++++........  ...+.+|||||...          +..+...++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~   70 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG----------GRWLPGHCM   70 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCcc----------chhhhhhhh
Confidence            469999999999999999999987 44455666777765444333  35688999999643          122233333


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~  218 (237)
                      ..   +|++++|+|.+...+... ..++..+..    .+.|+++|+||+|+.+.
T Consensus        71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  121 (166)
T 3q72_A           71 AM---GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS  121 (166)
T ss_dssp             -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred             hh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccc
Confidence            33   899999999875322111 233444433    36899999999999753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=3.3e-17  Score=127.38  Aligned_cols=113  Identities=17%  Similarity=0.148  Sum_probs=73.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ..++|+++|.+|||||||+|+|++... ....+..+.+.. .+...+..+.+|||||....          ..+...++.
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~   82 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE-EIVINNTRFLMWDIGGQESL----------RSSWNTYYT   82 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSC-EEEECCSCSSCE-EEEETTEEEEEEECCC--------------CGGGHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCCccceE-EEEECCEEEEEEECCCCHhH----------HHHHHHHhc
Confidence            347999999999999999999997743 344444443322 22234678999999997431          112233333


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~  218 (237)
                      .   +|++++|+|++...+... ..++..+..    .+.|+++|+||+|+...
T Consensus        83 ~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  132 (187)
T 1zj6_A           83 N---TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC  132 (187)
T ss_dssp             T---CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred             C---CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence            3   999999999886533222 233333332    47899999999999753

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.72  E-value=4.7e-17  Score=139.38  Aligned_cols=125  Identities=20%  Similarity=0.269  Sum_probs=85.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccccee-----eccCCCC----------------------ceEE-------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPG----------------------LTQT-------------  130 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~-----~~~~~~g----------------------~t~~-------------  130 (237)
                      ..|+|+|+|.+|||||||+|+|++.. ..     .++..|+                      +|.+             
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~-~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSC-CSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCC-cCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            56899999999999999999999973 22     2333344                      1111             


Q ss_pred             -------------EEEEEc-CCeEEEEeCCCCCCccc---chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHH
Q 026538          131 -------------INFFKL-GTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH  193 (237)
Q Consensus       131 -------------~~~~~~-~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~  193 (237)
                                   +..... +..+.||||||+.....   .....+.+..++..|+..  ..+++++|+|+...+...+.
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiL~v~~a~~~~~~~~~  186 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANSDLANSDA  186 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTS--TTEEEEEEEETTSCGGGCHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcC--CCeEEEEEecCCCccchhHH
Confidence                         111111 46799999999865321   233344566777777763  25677778888776665554


Q ss_pred             -HHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          194 -ELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       194 -~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                       .+++.+...+.|+++|+||+|+.+.
T Consensus       187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~  212 (353)
T 2x2e_A          187 LKVAKEVDPQGQRTIGVITKLDLMDE  212 (353)
T ss_dssp             HHHHHHHCTTCTTEEEEEECGGGSCT
T ss_pred             HHHHHHhCcCCCceEEEeccccccCc
Confidence             3677777778999999999999754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.71  E-value=1.9e-17  Score=128.53  Aligned_cols=117  Identities=30%  Similarity=0.313  Sum_probs=80.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|++|||||||+|+|++..  ...+..+++|.+..   +...+..+.+|||||.........    ...+...|
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----~~~~~~~~   80 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI----DEIIARDY   80 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH----HHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC--ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH----HHHHHHHH
Confidence            4699999999999999999999874  44556677665542   223467899999999765321111    11222333


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      +.. ..++++++|+|....  .....++..+...+.|+++|+||+|+..
T Consensus        81 ~~~-~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~  126 (188)
T 2wjg_A           81 IIN-EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAK  126 (188)
T ss_dssp             HHH-HCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred             Hhc-cCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence            322 238999999998641  3334566666667899999999999853

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.71  E-value=1.3e-17  Score=129.04  Aligned_cols=113  Identities=18%  Similarity=0.164  Sum_probs=76.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ..++|+++|.+|||||||+|+|++.. .....+..+.+.. .+...+..+.+|||||....          ..+...++.
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~   87 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNE-VVHTSPTIGSNVE-EIVINNTRFLMWDIGGQESL----------RSSWNTYYT   87 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTS-CEEEECCSSSSCE-EEEETTEEEEEEEESSSGGG----------TCGGGGGGT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC-CCccCCcCceeeE-EEEECCEEEEEEECCCCHhH----------HHHHHHHhc
Confidence            45799999999999999999999884 3445555554432 22235678999999997431          111222232


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~  218 (237)
                         .+|++++|+|++...+... ..++..+.    ..+.|+++|+||+|+...
T Consensus        88 ---~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  137 (181)
T 2h17_A           88 ---NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC  137 (181)
T ss_dssp             ---TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             ---cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence               3899999999886533322 23333332    257899999999999753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.71  E-value=4.3e-17  Score=126.97  Aligned_cols=114  Identities=14%  Similarity=0.152  Sum_probs=74.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ..++|+++|.+|||||||+|+|++........+..+.+.. .+...+..+.+|||||...          +..+...++.
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~   89 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGNVTIKLWDIGGQPR----------FRSMWERYCR   89 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETTEEEEEEEECCSHH----------HHTTHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCCEEEEEEECCCCHh----------HHHHHHHHHc
Confidence            3479999999999999999999987421122222232222 2333477899999999632          2233344443


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHH-Hh---cCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~~---~~~piilv~NK~Dl~~~  218 (237)
                      .   +|++++|+|++....... ..++..+ ..   .+.|+++|+||+|+...
T Consensus        90 ~---~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  139 (188)
T 1zd9_A           90 G---VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA  139 (188)
T ss_dssp             T---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred             c---CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence            3   899999999875422211 2233333 22   47899999999999754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.71  E-value=2.3e-17  Score=128.58  Aligned_cols=114  Identities=18%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccc-eeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~-~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ..++|+++|.+|||||||+|+|++... .....+..+.+.. .+...+..+.+|||||....          ..+...++
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~   88 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE-KFKSSSLSFTVFDMSGQGRY----------RNLWEHYY   88 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE-EEECSSCEEEEEEECCSTTT----------GGGGGGGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE-EEEECCEEEEEEECCCCHHH----------HHHHHHHH
Confidence            457999999999999999999998741 1222222222211 22223678999999996541          11122223


Q ss_pred             hccccccEEEEEEeCCCCC--ChhHHHHHHHHHh-----cCCcEEEEEecCCCCCh
Q 026538          170 STRVSLKRVCLLIDTKWGV--KPRDHELISLMER-----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~  218 (237)
                      .   .+|++++|+|++...  ......+...+..     .+.|+++|+||+|+...
T Consensus        89 ~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  141 (190)
T 2h57_A           89 K---EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA  141 (190)
T ss_dssp             G---GCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred             h---cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence            2   389999999987542  1111222233332     47899999999999754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.70  E-value=4.6e-17  Score=127.48  Aligned_cols=114  Identities=16%  Similarity=0.140  Sum_probs=70.2

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ...++|+++|.+|||||||+|+|++... ....+..+... ..+...+..+.+|||||....          ..+...++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~-~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~   94 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEYKNICFTVWDVGGQDKI----------RPLWRHYF   94 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCC-EEEEEETTEEE-EEEEETTEEEEEEECC---------------CTTHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCc-cccCCcCceeE-EEEEECCEEEEEEECCCCHhH----------HHHHHHHh
Confidence            3457999999999999999999998732 22222222111 122234678999999997431          11222333


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~  218 (237)
                      ..   +|++++|+|++.+.+... ..++..+..    .+.|+++|+||+|+...
T Consensus        95 ~~---~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~  145 (192)
T 2b6h_A           95 QN---TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA  145 (192)
T ss_dssp             HT---CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             cc---CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence            33   999999999876422221 233333322    37899999999999754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.70  E-value=1.2e-16  Score=142.04  Aligned_cols=129  Identities=24%  Similarity=0.349  Sum_probs=88.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccc---e--eeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWG---V--VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~---~--~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~  163 (237)
                      .++|+++|.+++|||||+|+|++...   .  ......+|+|.+..   +...+..+.+|||||+.             .
T Consensus        19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-------------~   85 (482)
T 1wb1_A           19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------------D   85 (482)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------------H
T ss_pred             CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------------H
Confidence            46999999999999999999998731   1  12234556676653   22246689999999962             1


Q ss_pred             HHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      +..........+|++++|+|+..+...+..+.+..+...++|+++|+||+|+.+++......+++.+.+.
T Consensus        86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~  155 (482)
T 1wb1_A           86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQ  155 (482)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHh
Confidence            2223333334499999999999888888888888888889999999999999987666666666665543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.70  E-value=1.7e-17  Score=126.19  Aligned_cols=113  Identities=14%  Similarity=0.097  Sum_probs=72.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|.+|+|||||+|+|++........+..+.+........   ...+.+|||||....          ......++
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~   73 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPXYY   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh----------hhhhhhhh
Confidence            58999999999999999999987422223334444433333322   347899999996431          12233334


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      ..   +|++++|+|++...+... ..++..+..   .+.|+++|+||+|+.+.
T Consensus        74 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  123 (170)
T 1ek0_A           74 RN---AQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE  123 (170)
T ss_dssp             TT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred             cc---CcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence            33   899999999876422211 233444432   37899999999998643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.70  E-value=3.6e-17  Score=124.53  Aligned_cols=114  Identities=13%  Similarity=0.073  Sum_probs=75.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|.+|+|||||+|+|++........+..+.+........   ...+.+|||||+...          ......+
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~   75 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALAPMY   75 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGTHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh----------hcccHhh
Confidence            369999999999999999999988422333455555544433322   357899999997431          1222333


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      +..   +|++++|+|++...+... ..++..+..   ...|+++|+||+|+.+.
T Consensus        76 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~  126 (170)
T 1z0j_A           76 YRG---SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV  126 (170)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred             CcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence            333   899999999876432222 344444443   36789999999999753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.70  E-value=8.2e-17  Score=124.85  Aligned_cols=114  Identities=17%  Similarity=0.182  Sum_probs=74.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ..++|+++|.+|||||||+|+|++.. .....+..+.+.. .+...+..+.+|||||...          +......++ 
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~----------~~~~~~~~~-   83 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK-TLEHRGFKLNIWDVGGQKS----------LRSYWRNYF-   83 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE-EEEETTEEEEEEEECCSHH----------HHTTGGGGC-
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE-EEEECCEEEEEEECCCCHh----------HHHHHHHHh-
Confidence            45799999999999999999999874 3333333343322 2223477899999999632          112222222 


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCChH
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~~  219 (237)
                        ..+|++++|+|++.+.+... ..++..+..    .+.|+++|+||+|+....
T Consensus        84 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  135 (186)
T 1ksh_A           84 --ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL  135 (186)
T ss_dssp             --TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             --cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence              34899999999876432222 233333322    478999999999997643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.70  E-value=9.2e-17  Score=122.95  Aligned_cols=115  Identities=16%  Similarity=0.064  Sum_probs=70.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|.+|||||||+|+|++. ......+.+|++........ +  ..+.+|||||.....        +..+...+
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~   74 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGK-QERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--------KSWSQESC   74 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHHT
T ss_pred             EEEEEEECCCCccHHHHHHHHhcC-CCccccCccccceeEEEEEECCEEEEEEEEecCCCCccc--------hhhhHHhh
Confidence            469999999999999999999988 33444555666544333222 2  368899999975310        11222333


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc----CCcEEEEEecCCCCCh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFP  218 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~----~~piilv~NK~Dl~~~  218 (237)
                      +..   +|++++|+|.+...+... ..++..+...    +.|+++|+||+|+.+.
T Consensus        75 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~  126 (175)
T 2nzj_A           75 LQG---GSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARC  126 (175)
T ss_dssp             TTS---CSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred             ccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccc
Confidence            333   899999999875322111 2344444442    7899999999999753

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.70  E-value=7.3e-17  Score=126.17  Aligned_cols=114  Identities=18%  Similarity=0.241  Sum_probs=70.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|+|||||+|+|++........+..+.+........ +  ..+.+|||||...      ..    .+...
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~----~~~~~   94 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER------FN----SITSA   94 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG------GH----HHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH------HH----HHHHH
Confidence            4578999999999999999999987422222233333333332222 2  4689999999643      12    22333


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|++...+... ..++..+..   .+.|+++|+||+|+..
T Consensus        95 ~~~~---~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~  145 (192)
T 2il1_A           95 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET  145 (192)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence            3333   899999999876432222 233344433   3789999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.70  E-value=7.8e-17  Score=123.69  Aligned_cols=114  Identities=14%  Similarity=0.110  Sum_probs=70.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|+|||||+|+|++........+..+.+........ +  ..+.+|||||...          +......
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~   75 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER----------FRSLRTP   75 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG----------GHHHHGG
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh----------hhhhHHH
Confidence            4579999999999999999999987421222222332222222222 2  4799999999643          1222333


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-------cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~piilv~NK~Dl~~  217 (237)
                      ++.   .+|++++|+|.....+... ..++..+..       .+.|+++|+||+|+..
T Consensus        76 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~  130 (177)
T 1wms_A           76 FYR---GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE  130 (177)
T ss_dssp             GGT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred             HHh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence            333   3899999999875422211 233333322       4689999999999863

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.70  E-value=7.7e-17  Score=124.88  Aligned_cols=111  Identities=16%  Similarity=0.128  Sum_probs=69.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .++|+++|.+|||||||+|+|++..   .....++++.+.   .....+  ..+.+|||||....          ..+..
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   70 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------SAMRD   70 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS---CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------CTTHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH----------HHHHH
Confidence            4699999999999999999999873   233333333322   122223  34778999996531          11222


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~  218 (237)
                      .++..   +|++++|+|.....+... ..++..+..    .+.|+++|+||+|+...
T Consensus        71 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~  124 (189)
T 4dsu_A           71 QYMRT---GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR  124 (189)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred             HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc
Confidence            33333   899999999875322111 233333332    37899999999999743

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.70  E-value=5e-17  Score=128.64  Aligned_cols=112  Identities=20%  Similarity=0.183  Sum_probs=70.6

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE--EEEEE-cC--CeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~--~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ...++|+++|.+|||||||+|+|++...  .....+.++.+  ..... .+  ..+.+|||||....          ...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~   85 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF----------RTI   85 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCC--CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG----------TCC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHH
Confidence            3567999999999999999999998742  22222333322  22222 23  57899999996431          111


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCC
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTV  216 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~  216 (237)
                      ...++..   +|++++|+|+........ ..++..+..   .+.|+++|+||+|+.
T Consensus        86 ~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  138 (213)
T 3cph_A           86 TTAYYRG---AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME  138 (213)
T ss_dssp             CHHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred             HHHHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            2233332   899999999875322111 234444433   368999999999985

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.69  E-value=1.3e-16  Score=125.57  Aligned_cols=112  Identities=13%  Similarity=0.093  Sum_probs=71.9

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ...++|+++|.+|||||||+|+|++..   ......+++.+.   .+...+  ..+.+|||||....          ..+
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~   78 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAI   78 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSC---CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh----------HHH
Confidence            456799999999999999999999874   223333332221   222222  36899999997541          122


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      ...++..   +|++++|+|+....+... ..++..+..    .+.|+++|+||+|+..
T Consensus        79 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  133 (206)
T 2bov_A           79 RDNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED  133 (206)
T ss_dssp             HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred             HHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence            2333333   899999999875321111 233333332    3789999999999965

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.69  E-value=1.5e-16  Score=125.14  Aligned_cols=114  Identities=17%  Similarity=0.132  Sum_probs=74.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|||||||+|+|++........+..+.+........   ...+.+|||||+..          +..+...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~   76 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER----------YRTITTA   76 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHT
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hcchHHH
Confidence            3479999999999999999999987422222333344443332222   35789999999743          1223333


Q ss_pred             HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++.   .+|++++|+|+..+.+.. ...++..+..   .+.|+++|+||+|+..
T Consensus        77 ~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  127 (203)
T 1zbd_A           77 YYR---GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED  127 (203)
T ss_dssp             TGG---GCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred             hhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence            333   389999999987542211 1234444443   3789999999999975

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.69  E-value=1.2e-16  Score=120.93  Aligned_cols=112  Identities=13%  Similarity=0.018  Sum_probs=68.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+|+++|++|+|||||+|+|++........+..+..........  ...+.+|||||....          ..+...++.
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~~~~~   73 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRDLYIK   73 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh----------HHHHHHHhc
Confidence            58999999999999999999987321111111111111112222  234899999996541          122223333


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                      .   +|++++|+|.....+... ..++..+.    ..+.|+++|+||+|+.+
T Consensus        74 ~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  122 (167)
T 1kao_A           74 N---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES  122 (167)
T ss_dssp             H---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred             c---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence            3   899999999875322111 22222222    24799999999999864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.69  E-value=1.6e-16  Score=120.08  Aligned_cols=109  Identities=16%  Similarity=0.127  Sum_probs=68.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ++|+++|.+|+|||||+|+|++...   .....+++.+   ..+...  ...+.+|||||....   .       .+...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---~-------~~~~~   70 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHF---VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY---S-------AMRDQ   70 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSC---C-------HHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcC---ccccCCccceEEEEEEEECCEEEEEEEEECCCchhh---h-------HHHHH
Confidence            5899999999999999999998732   2222222211   112222  345789999997541   1       12222


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|+....+... ..++..+..    .+.|+++|+||+|+.+
T Consensus        71 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~  122 (166)
T 2ce2_X           71 YMRT---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA  122 (166)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred             hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence            3332   899999999875322111 233333332    2799999999999875

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.69  E-value=3.3e-17  Score=124.74  Aligned_cols=111  Identities=18%  Similarity=0.175  Sum_probs=68.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .++|+++|.+|+|||||+|+|++...  .....+.++.+.  ..... +  ..+.+|||||.....          ....
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~   70 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR----------TITT   70 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCC--CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS----------CCCH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCC--CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh----------hhHH
Confidence            36899999999999999999998742  122222222222  22222 2  468999999964311          1122


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      .++..   +|++++|+|++...+... ..++..+..   .+.|+++|+||+|+..
T Consensus        71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  122 (170)
T 1g16_A           71 AYYRG---AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET  122 (170)
T ss_dssp             HHHTT---EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred             HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc
Confidence            23332   899999999875422111 234444433   3789999999999843

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.69  E-value=8.7e-17  Score=126.36  Aligned_cols=114  Identities=25%  Similarity=0.244  Sum_probs=68.4

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ...++|+++|.+|||||||+|+|++........+..+.+........   ...+.+|||||....      .    ....
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~----~~~~   95 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF------R----SIAK   95 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC------H----HHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch------h----hhHH
Confidence            45679999999999999999999987422223333343333222222   346899999996531      1    2223


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTV  216 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~  216 (237)
                      .++..   +|++++|+|+....+... ..++..+..   .+.|+++|+||+|+.
T Consensus        96 ~~~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~  146 (199)
T 2p5s_A           96 SYFRK---ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR  146 (199)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred             HHHhh---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence            33333   899999999875422222 334444443   368999999999985

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.69  E-value=4.9e-17  Score=126.59  Aligned_cols=115  Identities=16%  Similarity=0.093  Sum_probs=74.4

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      +..++|+++|.+|+|||||+|+|++........+..+.+........   ...+.+|||||......          ...
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~   89 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT----------ITT   89 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC----------SGG
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh----------hHH
Confidence            34579999999999999999999987422222333444443332222   35789999999654211          111


Q ss_pred             HHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      .++.   .+|++++|+|++...+.. ...++..+..   .+.|+++|+||+|+..
T Consensus        90 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  141 (189)
T 2gf9_A           90 AYYR---GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED  141 (189)
T ss_dssp             GGGT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             Hhcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence            2222   389999999987532221 1345555544   3789999999999964

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.69  E-value=1.6e-17  Score=144.95  Aligned_cols=121  Identities=28%  Similarity=0.299  Sum_probs=79.8

Q ss_pred             CCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCC-eEEEEeCCCCCCcccc--hHHHHHH
Q 026538           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGT-KLCLVDLPGYGFAYAK--EEVKDAW  161 (237)
Q Consensus        88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~-~~~liDTpG~~~~~~~--~~~~~~~  161 (237)
                      +....++|+++|.+|+|||||+|+|++. ....++..+++|.+....   ..+. .+.+|||||+.+....  ..+..  
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~--  106 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEK--  106 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHH--
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcC-CCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHH--
Confidence            3456689999999999999999999998 445667788887765332   2233 8999999998653211  11111  


Q ss_pred             HHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       162 ~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                         ...++.   .+|++++|+|+  +.......++..+...++|+++|+||+|+....
T Consensus       107 ---~~~~l~---~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~  156 (423)
T 3qq5_A          107 ---ARRVFY---RADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK  156 (423)
T ss_dssp             ---HHHHHT---SCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred             ---HHHHHh---cCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence               122333   39999999998  566778889999988899999999999997544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.69  E-value=1.2e-16  Score=123.03  Aligned_cols=115  Identities=14%  Similarity=0.119  Sum_probs=72.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|+|||||+|+|++...........+.+........   ...+.+|||||....          ......
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~   80 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----------HSLAPM   80 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG----------GGGTHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh----------hhhhHH
Confidence            3469999999999999999999987421111222233332222222   347999999996431          112223


Q ss_pred             HHhccccccEEEEEEeCCCCCC-hhHHHHHHHHHhc---CCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS---QTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~-~~~~~~~~~l~~~---~~piilv~NK~Dl~~~  218 (237)
                      ++..   +|++++|+|++...+ .....++..+...   +.|+++|+||+|+...
T Consensus        81 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~  132 (181)
T 2efe_B           81 YYRG---AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA  132 (181)
T ss_dssp             HHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred             Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence            3333   899999999875432 1223444444432   6889999999999653

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.69  E-value=2.2e-16  Score=137.48  Aligned_cols=129  Identities=16%  Similarity=0.219  Sum_probs=85.2

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--------------EE--------EEcCCeEEEEeCCC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--------------NF--------FKLGTKLCLVDLPG  147 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--------------~~--------~~~~~~~~liDTpG  147 (237)
                      ...++|+++|.+|+|||||+|+|++.. .........++...              ..        ......+.+|||||
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIW-TSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCC-CCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcc-cccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            456799999999999999999999852 11100000000000              00        00114689999999


Q ss_pred             CCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-ChhHHHHHHHHHhcCC-cEEEEEecCCCCChHHHHHHH
Q 026538          148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRA  225 (237)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-piilv~NK~Dl~~~~~~~~~~  225 (237)
                      +.+          +......++   ..+|++++|+|+..+. ..+..+++..+...+. |+++|+||+|+.+.++.....
T Consensus        85 h~~----------~~~~~~~~~---~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~  151 (403)
T 3sjy_A           85 HEV----------LMATMLSGA---ALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY  151 (403)
T ss_dssp             CGG----------GHHHHHHHH---TTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             cHH----------HHHHHHHHH---hhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHH
Confidence            743          111222222   3399999999999876 6667777777766554 899999999999887776666


Q ss_pred             HHHHHHH
Q 026538          226 MQIEEVI  232 (237)
Q Consensus       226 ~~l~~~l  232 (237)
                      +++.+.+
T Consensus       152 ~~i~~~l  158 (403)
T 3sjy_A          152 RQIKQFT  158 (403)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666655

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.69  E-value=1.4e-16  Score=122.23  Aligned_cols=114  Identities=15%  Similarity=0.143  Sum_probs=73.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|||||||+|+|++........+..+.+........   ...+.+|||||....          ......
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~   83 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTRS   83 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh----------hhhHHH
Confidence            4579999999999999999999987422222233333333333222   347899999996431          122333


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|+....+... ..++..+..   .+.|+++|+||+|+..
T Consensus        84 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  134 (179)
T 1z0f_A           84 YYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA  134 (179)
T ss_dssp             HHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             Hhcc---CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence            3333   899999999876422222 234443432   4789999999999964

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.68  E-value=3.3e-16  Score=121.63  Aligned_cols=114  Identities=19%  Similarity=0.126  Sum_probs=72.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-EEEEE-cC-----------CeEEEEeCCCCCCcccchHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFK-LG-----------TKLCLVDLPGYGFAYAKEEV  157 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-~~~~~-~~-----------~~~~liDTpG~~~~~~~~~~  157 (237)
                      ..++|+++|.+|||||||+|+|++........+..+.+.. ..... .+           ..+.+|||||...       
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------   82 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-------   82 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------
Confidence            4579999999999999999999987321111222222211 11222 22           3799999999743       


Q ss_pred             HHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          158 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                         +......++.   .+|++++|+|++...+... ..++..+..    .+.|+++|+||+|+..
T Consensus        83 ---~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  141 (195)
T 3bc1_A           83 ---FRSLTTAFFR---DAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED  141 (195)
T ss_dssp             ---GHHHHHHTTT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred             ---HHHHHHHHHc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence               1223333333   3999999999876432222 344444443    4789999999999864

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.68  E-value=2.2e-17  Score=128.48  Aligned_cols=113  Identities=17%  Similarity=0.116  Sum_probs=73.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ..++|+++|.+|||||||+|+|++.. .....+..+.+.. .+...+..+.+|||||.......          ...++ 
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~~----------~~~~~-   87 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGD-VVTTVPTVGVNLE-TLQYKNISFEVWDLGGQTGVRPY----------WRCYF-   87 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSC-CEEECSSTTCCEE-EEEETTEEEEEEEECCSSSSCCC----------CSSSS-
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCC-CCCcCCCCceEEE-EEEECCEEEEEEECCCCHhHHHH----------HHHHh-
Confidence            35799999999999999999998773 2333333333222 22234678999999997542111          11112 


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHH-Hh---cCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~~---~~~piilv~NK~Dl~~~  218 (237)
                        ..+|++++|+|++++.+... ..++..+ ..   .+.|+++|+||+|+...
T Consensus        88 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  138 (189)
T 2x77_A           88 --SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA  138 (189)
T ss_dssp             --TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred             --hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence              23899999999876533222 2233333 32   37899999999999765

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.68  E-value=1.9e-16  Score=120.03  Aligned_cols=110  Identities=14%  Similarity=0.090  Sum_probs=68.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce---EEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t---~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .++|+++|.+|+|||||+|+|++...   .....+++   ....+...+  ..+.+|||||....          ..+..
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~   70 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEF---VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRD   70 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------HHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCcc---CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh----------HHHHH
Confidence            36899999999999999999998742   22222222   211222222  46899999996431          12233


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      .++..   +|++++|+|+....+... ..++..+..    .+.|+++|+||+|+..
T Consensus        71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  123 (168)
T 1u8z_A           71 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED  123 (168)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred             HHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence            33333   899999999875322111 233333332    3789999999999864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.68  E-value=1.7e-16  Score=123.93  Aligned_cols=113  Identities=19%  Similarity=0.177  Sum_probs=73.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|||||||+|+|++..  ......+.++.+.  ..... +  ..+.+|||||....          ..+.
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~   82 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDT--YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTIT   82 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------CTTH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh----------hhhH
Confidence            45799999999999999999999874  2233334343333  22222 3  46899999996431          1122


Q ss_pred             HHHHhccccccEEEEEEeCCCCCCh-hHHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      ..++..   +|++++|+|+.+..+. ....++..+..   .+.|+++|+||+|+...
T Consensus        83 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~  136 (196)
T 3tkl_A           83 SSYYRG---AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK  136 (196)
T ss_dssp             HHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred             HHHHhh---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence            333433   8999999998763221 11334444433   27899999999999754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.68  E-value=6.3e-17  Score=124.85  Aligned_cols=114  Identities=20%  Similarity=0.072  Sum_probs=68.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..++|+++|.+|+|||||+|+|++........+..+.+........+  ..+.+|||||......          +...+
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~   74 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI----------FPQTY   74 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC----------CCGGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH----------HHHHH
Confidence            45799999999999999999999774222223333333322222223  4678999999754211          11122


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHH----HhcCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l----~~~~~piilv~NK~Dl~~  217 (237)
                      +.   .+|++++|+|.....+... ..++..+    ...+.|+++|+||+|+..
T Consensus        75 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  125 (181)
T 3t5g_A           75 SI---DINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM  125 (181)
T ss_dssp             TT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred             Hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence            22   3899999999875321111 2233233    233789999999999864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=2.9e-16  Score=122.83  Aligned_cols=114  Identities=14%  Similarity=0.008  Sum_probs=69.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..++|+++|.+|||||||+|+|++........+..+.+........  ...+.+|||||....      .    .+...+
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~----~~~~~~   76 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF------P----AMQRLS   76 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC------H----HHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHh------H----HHHHHh
Confidence            4579999999999999999999987321111122222221112112  346899999996531      1    222233


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-----cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|++...+... ..++..+..     .+.|+++|+||+|+..
T Consensus        77 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~  128 (199)
T 2gf0_A           77 ISK---GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ  128 (199)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred             hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence            333   899999999875321111 223333322     2689999999999975

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=1e-16  Score=125.30  Aligned_cols=114  Identities=14%  Similarity=0.075  Sum_probs=76.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|+|||||+|+|++........+..+.+........   ...+.+|||||....          ......
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~   91 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF----------HSLAPM   91 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG----------GGGTHH
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh----------HhhhHH
Confidence            3479999999999999999999988422344556666655443332   356899999996431          112223


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|++...+... ..++..+..   .+.|+++|+||+|+.+
T Consensus        92 ~~~~---~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~  142 (192)
T 2fg5_A           92 YYRG---SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD  142 (192)
T ss_dssp             HHTT---CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             hhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence            3333   899999999876432221 334444443   2689999999999864

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.68  E-value=2.7e-16  Score=137.20  Aligned_cols=130  Identities=20%  Similarity=0.292  Sum_probs=88.3

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccc-eeeccCCCCceEEEEEEE-------------c-------------CCeEEE
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK-------------L-------------GTKLCL  142 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~-~~~~~~~~g~t~~~~~~~-------------~-------------~~~~~l  142 (237)
                      ...++|+++|++++|||||+++|++... .......+|.|.+..+..             .             ...+.+
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            3457999999999999999999997521 011122345554432211             0             146999


Q ss_pred             EeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-ChhHHHHHHHHHhcCC-cEEEEEecCCCCChHH
Q 026538          143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPID  220 (237)
Q Consensus       143 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-piilv~NK~Dl~~~~~  220 (237)
                      |||||+.             .+...+......+|++++|+|+..+. ..+..+.+..+...+. |+++|+||+|+.+..+
T Consensus        88 iDtPGh~-------------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~  154 (410)
T 1kk1_A           88 IDAPGHE-------------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK  154 (410)
T ss_dssp             EECSSHH-------------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH
T ss_pred             EECCChH-------------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHH
Confidence            9999962             23445555555689999999999876 6667666666665554 7999999999988765


Q ss_pred             HHHHHHHHHHHH
Q 026538          221 VARRAMQIEEVI  232 (237)
Q Consensus       221 ~~~~~~~l~~~l  232 (237)
                      .....+++++.+
T Consensus       155 ~~~~~~~i~~~l  166 (410)
T 1kk1_A          155 ALENYRQIKEFI  166 (410)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555555544

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.68  E-value=5.2e-16  Score=136.35  Aligned_cols=129  Identities=17%  Similarity=0.224  Sum_probs=83.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccce---------eeccCC----------------------CCceEEEEEE---Ec
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDK----------------------PGLTQTINFF---KL  136 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~---------~~~~~~----------------------~g~t~~~~~~---~~  136 (237)
                      ..++|+++|.+|+|||||+|+|++....         ...+..                      .|.|.+..+.   ..
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~  102 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA  102 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence            3469999999999999999999875310         011111                      2334333222   23


Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCC-cEEEEEecCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT  215 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-piilv~NK~Dl  215 (237)
                      +..+.+|||||+.+          +......++.   .+|++++|+|+..+...+..+++..+...++ |+++|+||+|+
T Consensus       103 ~~~~~iiDtpGh~~----------f~~~~~~~~~---~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl  169 (434)
T 1zun_B          103 KRKFIIADTPGHEQ----------YTRNMATGAS---TCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL  169 (434)
T ss_dssp             SEEEEEEECCCSGG----------GHHHHHHHHT---TCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred             CceEEEEECCChHH----------HHHHHHHHHh---hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcC
Confidence            56799999999753          1112222333   3999999999998888888777777777776 59999999999


Q ss_pred             CC--hHHHHHHHHHHHHHH
Q 026538          216 VF--PIDVARRAMQIEEVI  232 (237)
Q Consensus       216 ~~--~~~~~~~~~~l~~~l  232 (237)
                      .+  ++......+++.+.+
T Consensus       170 ~~~~~~~~~~i~~~~~~~~  188 (434)
T 1zun_B          170 NGFDERVFESIKADYLKFA  188 (434)
T ss_dssp             TTSCHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHH
Confidence            86  333334444444443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.68  E-value=7.7e-17  Score=122.45  Aligned_cols=114  Identities=17%  Similarity=0.114  Sum_probs=70.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|||||||+|+|++........+..+.+........   ...+.+|||||....          ..+...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~   73 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF----------DAITKA   73 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT----------TCCCHH
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH----------HHHHHH
Confidence            3469999999999999999999987321111222222222222221   347899999996431          111223


Q ss_pred             HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|++...+.. ...++..+..  .+.|+++|+||+|+.+
T Consensus        74 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  123 (168)
T 1z2a_A           74 YYRG---AQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD  123 (168)
T ss_dssp             HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred             HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence            3333   89999999987532111 1234444433  3789999999999865

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.68  E-value=2.4e-16  Score=123.30  Aligned_cols=112  Identities=20%  Similarity=0.155  Sum_probs=69.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--------------------------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--------------------------------  137 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--------------------------------  137 (237)
                      ..++|+++|.+|+|||||+|+|++........+..+.......... +                                
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN   85 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence            4579999999999999999999988421111111121111111111 1                                


Q ss_pred             -------CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-cCCcEEE
Q 026538          138 -------TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-SQTKYQV  208 (237)
Q Consensus       138 -------~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-~~~piil  208 (237)
                             ..+.+|||||....          ......++..   +|++++|+|++.+.+... ..++..+.. .+.|+++
T Consensus        86 ~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~~---~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piil  152 (208)
T 3clv_A           86 YNENLCNIKFDIWDTAGQERY----------ASIVPLYYRG---ATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIIL  152 (208)
T ss_dssp             CCTTTCEEEEEEEECTTGGGC----------TTTHHHHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred             ccCccceeEEEEEECCCcHHH----------HHHHHHHhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence                   57899999995431          1122333333   899999999886532222 234444443 4689999


Q ss_pred             EEecCCC
Q 026538          209 VLTKTDT  215 (237)
Q Consensus       209 v~NK~Dl  215 (237)
                      |+||+|+
T Consensus       153 v~NK~D~  159 (208)
T 3clv_A          153 VANKIDK  159 (208)
T ss_dssp             EEECTTC
T ss_pred             EEECCCc
Confidence            9999994

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.68  E-value=1.6e-16  Score=124.18  Aligned_cols=111  Identities=18%  Similarity=0.195  Sum_probs=73.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      ..+|+++|++|||||||+|+|++.. .....+..+.+.. .+...+..+.+|||||.....          .+...++. 
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~-   89 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDR-LATLQPTWHPTSE-ELAIGNIKFTTFDLGGHIQAR----------RLWKDYFP-   89 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSC-CCCCCCCCSCEEE-EEEETTEEEEEEECCCSGGGT----------TSGGGGCT-
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC-CCccccCCCCCeE-EEEECCEEEEEEECCCCHHHH----------HHHHHHHh-
Confidence            3699999999999999999999873 3344444444432 233346789999999975311          11122222 


Q ss_pred             cccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          172 RVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                        .+|++++|+|++.+.+... ..++..+.    ..+.|+++|+||+|+..
T Consensus        90 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  138 (190)
T 1m2o_B           90 --EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN  138 (190)
T ss_dssp             --TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred             --cCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence              3899999999886432221 23333332    24789999999999975

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.68  E-value=6.8e-17  Score=127.14  Aligned_cols=111  Identities=18%  Similarity=0.220  Sum_probs=69.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      ..+|+++|++|||||||+|+|.+.. .....+..+.+.. .+...+..+.+|||||....          ..+...|+. 
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~-   91 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSE-ELTIAGMTFTTFDLGGHIQA----------RRVWKNYLP-   91 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE-EEEETTEEEEEEEECC--------------CCGGGGGGG-
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC-CCccCCCCCceeE-EEEECCEEEEEEECCCcHhh----------HHHHHHHHh-
Confidence            3689999999999999999999873 3333344444322 22334678999999996431          111222333 


Q ss_pred             cccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          172 RVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                        .+|++++|+|+.+..+... ..++..+.    ..++|+++|+||+|+..
T Consensus        92 --~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  140 (198)
T 1f6b_A           92 --AINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE  140 (198)
T ss_dssp             --GCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred             --cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence              3899999999876422221 23333332    24789999999999974

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=1.9e-16  Score=120.62  Aligned_cols=114  Identities=14%  Similarity=-0.039  Sum_probs=69.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .++|+++|.+|||||||+|+|++........+..+.+........  ...+.+|||||....      .    .+...++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~------~----~~~~~~~   72 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF------P----AMQRLSI   72 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC------H----HHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhh------H----HHHHHhc
Confidence            368999999999999999999987321111111122211111111  346899999997541      1    2222333


Q ss_pred             hccccccEEEEEEeCCCCCChh-HHHHHHHHHh-----cCCcEEEEEecCCCCCh
Q 026538          170 STRVSLKRVCLLIDTKWGVKPR-DHELISLMER-----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~-----~~~piilv~NK~Dl~~~  218 (237)
                      ..   +|++++|+|++...... ...++..+..     .+.|+++|+||+|+.+.
T Consensus        73 ~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~  124 (172)
T 2erx_A           73 SK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS  124 (172)
T ss_dssp             HH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred             cc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence            33   89999999987532111 1234444433     36899999999998643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=2.7e-16  Score=120.98  Aligned_cols=114  Identities=15%  Similarity=0.199  Sum_probs=70.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|+|||||+|+|++.. .......+.++.+..  .... +  ..+.+|||||...          +....
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~   77 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGA-FLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER----------FRSVT   77 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC-CCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHH
Confidence            34799999999999999999999873 222223333333322  2122 2  3789999999643          12222


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      ..++   ..+|++++|+|++...+... ..++..+..   .+.|+++|+||+|+...
T Consensus        78 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  131 (180)
T 2g6b_A           78 HAYY---RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE  131 (180)
T ss_dssp             -CCG---GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred             HHHc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence            2333   33899999999876422221 234444433   47899999999999753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.68  E-value=2.2e-16  Score=122.92  Aligned_cols=115  Identities=19%  Similarity=0.163  Sum_probs=72.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHH-HHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWE-ELVK  166 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~-~~~~  166 (237)
                      ..++|+++|.+|||||||+|+|++........+..+.+........   ...+.+|||||...          +. .+..
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~   88 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER----------FRKSMVQ   88 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH----------HHTTTHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhhH
Confidence            4579999999999999999999987421222223333322222222   24799999999532          12 2334


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~  218 (237)
                      .++..   +|++++|+|++...+... ..++..+.    ..+.|+++|+||+|+...
T Consensus        89 ~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  142 (189)
T 1z06_A           89 HYYRN---VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA  142 (189)
T ss_dssp             HHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred             HHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            44443   899999999875322111 23333333    246899999999999643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.68  E-value=2.8e-16  Score=122.24  Aligned_cols=110  Identities=15%  Similarity=0.124  Sum_probs=66.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .++|+++|.+|||||||+|+|++...   .....+++.+.   .+...+  ..+.+|||||...          +..+..
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~   87 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQNHF---VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRD   87 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcCCC---ccccCCccceEEEEEEEECCEEEEEEEEECCChHH----------HHHHHH
Confidence            36999999999999999999998732   22222232221   122222  4589999999642          122333


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      .++..   +|++++|+|.....+... ..++..+..    .+.|+++|+||+|+..
T Consensus        88 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           88 QYMRT---GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             --CTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred             HhhCc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence            34333   899999999875422222 233333332    3689999999999875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.67  E-value=9.2e-17  Score=124.04  Aligned_cols=113  Identities=20%  Similarity=0.164  Sum_probs=72.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ..++|+++|.+|||||||+|+|++. ......+..+.+.. .+...+..+.+|||||.....          .....++ 
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~-   83 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIG-EVVTTKPTIGFNVE-TLSYKNLKLNVWDLGGQTSIR----------PYWRCYY-   83 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS-EEEEECSSTTCCEE-EEEETTEEEEEEEEC----CC----------TTGGGTT-
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC-CcCccCCcCccceE-EEEECCEEEEEEECCCCHhHH----------HHHHHHh-
Confidence            4579999999999999999999977 33444555554332 222246789999999975311          1111222 


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~  218 (237)
                        ..+|++++|+|++...+... ..++..+.    ..+.|+++|+||+|+...
T Consensus        84 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  134 (183)
T 1moz_A           84 --ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA  134 (183)
T ss_dssp             --TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred             --ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence              23899999999876533222 23333333    247899999999999754

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.67  E-value=6.5e-16  Score=134.27  Aligned_cols=127  Identities=20%  Similarity=0.292  Sum_probs=87.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc---ceee-----------ccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccch
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW---GVVR-----------TSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKE  155 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~---~~~~-----------~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~  155 (237)
                      .+|+++|++|+|||||+++|++..   ....           .....|.|.+....   ..+..+.+|||||+.+     
T Consensus         4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~-----   78 (397)
T 1d2e_A            4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD-----   78 (397)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH-----
T ss_pred             EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH-----
Confidence            589999999999999999999741   0000           01134566654332   2357899999999631     


Q ss_pred             HHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCCh-HHHHHHHHHHHHHH
Q 026538          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFP-IDVARRAMQIEEVI  232 (237)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~-~~~~~~~~~l~~~l  232 (237)
                              +..........+|++++|+|+..+...+..+.+..+...++| +++|+||+|+... +......+++++.+
T Consensus        79 --------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l  149 (397)
T 1d2e_A           79 --------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELL  149 (397)
T ss_dssp             --------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence                    222233334459999999999988888888888888778899 7899999999853 32233334444433

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.67  E-value=3.3e-16  Score=139.40  Aligned_cols=129  Identities=16%  Similarity=0.192  Sum_probs=83.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccce-----------------------------eeccCCCCceEEEE---EEEcCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTIN---FFKLGT  138 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~-----------------------------~~~~~~~g~t~~~~---~~~~~~  138 (237)
                      ...+|+++|.+|+|||||+|+|++....                             ......+|+|.+..   +...+.
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            3469999999999999999999865110                             11122345565442   233467


Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-------CChhHHHHHHHHHhcCC-cEEEEE
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL  210 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~-piilv~  210 (237)
                      .+.||||||+.+          +......++.   .+|++++|+|+..+       +.....+.+..+...++ |+++|+
T Consensus       112 ~~~iiDTPG~~~----------f~~~~~~~~~---~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvvi  178 (483)
T 3p26_A          112 NFTIVDAPGHRD----------FVPNAIMGIS---QADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAM  178 (483)
T ss_dssp             EEEEECCCCCGG----------GHHHHHHHHT---TCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             eEEEEECCCcHH----------HHHHHHHhhh---hCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEE
Confidence            899999999853          1122223333   39999999999876       44566666666666664 599999


Q ss_pred             ecCCCCC--hHHHHHHHHHHHHHH
Q 026538          211 TKTDTVF--PIDVARRAMQIEEVI  232 (237)
Q Consensus       211 NK~Dl~~--~~~~~~~~~~l~~~l  232 (237)
                      ||+|+.+  .....+..+.+.+.+
T Consensus       179 NK~Dl~~~~~~~~~~i~~~~~~~l  202 (483)
T 3p26_A          179 NKMDNVDWSQQRFEEIKSKLLPYL  202 (483)
T ss_dssp             ECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred             ECcCcccchHHHHHHHHHHHHHHH
Confidence            9999976  333344444444443

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.67  E-value=4.6e-17  Score=129.59  Aligned_cols=115  Identities=16%  Similarity=0.104  Sum_probs=73.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C---CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G---TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ..++|+++|.+|||||||+|+|++...........+.+........ +   ..+.+|||||......          +..
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~   79 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV----------LKD   79 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC----------CCH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch----------HHH
Confidence            4579999999999999999999976433333444444443333322 2   4689999999653211          112


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCCh
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~~  218 (237)
                      .++..   +|++++|+|++.+.+... ..++..+.   ..+.|+++|+||+|+...
T Consensus        80 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  132 (218)
T 4djt_A           80 VYYIG---ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR  132 (218)
T ss_dssp             HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--
T ss_pred             HHhhc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence            22322   899999999886433222 23334433   236899999999999754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.67  E-value=1.7e-16  Score=120.37  Aligned_cols=109  Identities=15%  Similarity=0.099  Sum_probs=68.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-EE-EEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-~~-~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|||||||+|+|++...   .....+++.. .. ....   ...+.+|||||.....          .+...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~   70 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----------AMRDL   70 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCC---CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----------THHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH----------HHHHH
Confidence            5899999999999999999998731   2222222221 11 1111   3458899999975421          12223


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|+....+... ..++..+..    .+.|+++|+||+|+..
T Consensus        71 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  122 (167)
T 1c1y_A           71 YMKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED  122 (167)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred             Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence            3332   899999999875321111 233333332    3789999999999964

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.67  E-value=2.7e-16  Score=125.15  Aligned_cols=118  Identities=14%  Similarity=0.067  Sum_probs=64.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..++|+++|.+|||||||+|+|++........+..+..........  ...+.+|||||...          +..+...+
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~  102 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD----------YDRLRPLF  102 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC-----------------------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchh----------hhHHHHHH
Confidence            3479999999999999999999987321111111111111112212  23689999999643          12223333


Q ss_pred             HhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCChHHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~~~~  221 (237)
                      +..   +|++++|+|++...+...  ..++..+..  .++|+++|+||+|+......
T Consensus       103 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  156 (214)
T 2j1l_A          103 YPD---ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSL  156 (214)
T ss_dssp             --C---EEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHH
T ss_pred             hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchh
Confidence            333   899999999875422222  134444443  26899999999999865543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.67  E-value=2.5e-16  Score=121.66  Aligned_cols=111  Identities=14%  Similarity=0.119  Sum_probs=68.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce-EE-EE-EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QT-IN-FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t-~~-~~-~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|||||||+|+|++..   ......+++ .. .. ....+  ..+.+|||||.....          .+.
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~   83 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKI---FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS----------AMR   83 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC----------SSH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH----------HHH
Confidence            45799999999999999999999873   222222222 11 11 22222  346679999964311          112


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChh-HHHHHHHH----HhcCCcEEEEEecCCCCC
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLM----ERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l----~~~~~piilv~NK~Dl~~  217 (237)
                      ..++..   +|++++|+|.....+.. ...++..+    ...+.|+++|+||+|+..
T Consensus        84 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  137 (183)
T 3kkq_A           84 EQYMRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH  137 (183)
T ss_dssp             HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred             HHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence            222322   89999999987532111 12333333    235789999999999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.67  E-value=4.2e-16  Score=121.49  Aligned_cols=114  Identities=16%  Similarity=0.149  Sum_probs=71.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccC-------CCCceEEEEEEEc--------CCeEEEEeCCCCCCcccch
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL--------GTKLCLVDLPGYGFAYAKE  155 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-------~~g~t~~~~~~~~--------~~~~~liDTpG~~~~~~~~  155 (237)
                      ..++|+++|.+|||||||++.+.+.. ......       ....|....+...        ...+.+|||||....    
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----   87 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY----   87 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC----
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH----
Confidence            45799999999999999999888763 111111       1122333333221        235899999996531    


Q ss_pred             HHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHH----HHHHHHh-----cCCcEEEEEecCCCCCh
Q 026538          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE----LISLMER-----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~----~~~~l~~-----~~~piilv~NK~Dl~~~  218 (237)
                            ..+...++..   +|++++|+|++.+.......    +..++..     .+.|+++|+||+|+...
T Consensus        88 ------~~~~~~~~~~---~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~  150 (198)
T 3t1o_A           88 ------NASRKLILRG---VDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA  150 (198)
T ss_dssp             ------SHHHHHHTTT---CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred             ------HHHHHHHHhc---CCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence                  1223334443   99999999988543333322    2233322     47899999999998654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.67  E-value=1.5e-16  Score=122.26  Aligned_cols=112  Identities=16%  Similarity=0.156  Sum_probs=71.0

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ...++|+++|.+|||||||+|+|++..   ......+++...   .+...+  ..+.+|||||.....          .+
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~   73 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG----------AM   73 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTS----------CC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCc---CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhH----------HH
Confidence            355799999999999999999999883   233333333221   122222  468899999975421          11


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHH----HhcCCcEEEEEecCCCCC
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l----~~~~~piilv~NK~Dl~~  217 (237)
                      ...++..   +|++++|+|.....+... ..++..+    ...+.|+++|+||+|+..
T Consensus        74 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  128 (181)
T 2fn4_A           74 REQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES  128 (181)
T ss_dssp             HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred             HHHHHhh---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            1222222   899999999875321111 2233232    234789999999999865

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=1.1e-16  Score=124.82  Aligned_cols=113  Identities=21%  Similarity=0.163  Sum_probs=73.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|.+|||||||+|+|++........+..+.+........   ...+.+|||||....          ..+...+
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~   84 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF----------RTLTPSY   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG----------CCSHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh----------hhhhHHH
Confidence            469999999999999999999987422222333344433332222   356899999996431          1122233


Q ss_pred             HhccccccEEEEEEeCCCCCChh-HHHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|+....... ...++..+..    .++|+++|+||+|+..
T Consensus        85 ~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~  135 (195)
T 1x3s_A           85 YRG---AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN  135 (195)
T ss_dssp             HTT---CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred             hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence            333   89999999987542221 1344455543    3689999999999853

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.67  E-value=2.4e-16  Score=119.76  Aligned_cols=113  Identities=16%  Similarity=0.093  Sum_probs=72.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|.+|+|||||+|+|++........+..+.+........   +..+.+|||||....          ......+
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~   75 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPMY   75 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh----------hhhhHHh
Confidence            369999999999999999999987322222333444443332222   457899999996431          1122333


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|++...+... ..++..+..   .+.|+++|+||+|+..
T Consensus        76 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~  125 (170)
T 1r2q_A           76 YRG---AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN  125 (170)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             ccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence            333   899999999875422111 234444433   3689999999999864

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.67  E-value=5.4e-16  Score=141.35  Aligned_cols=128  Identities=16%  Similarity=0.199  Sum_probs=87.4

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccC------------------------------CCCceEEE---EEEEc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD------------------------------KPGLTQTI---NFFKL  136 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~------------------------------~~g~t~~~---~~~~~  136 (237)
                      ...++|+++|.+|+|||||+|+|++... .....                              .+|+|.+.   .+...
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~-~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN-IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSS-CSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcC-CccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            3567999999999999999999997631 11110                              24666554   23334


Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-------CChhHHHHHHHHHhcCCc-EEE
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQTK-YQV  208 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~p-iil  208 (237)
                      +..+.||||||+..             +..........+|++++|+|+..+       +..+..+.+..+...++| +++
T Consensus       244 ~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV  310 (611)
T 3izq_1          244 RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII  310 (611)
T ss_dssp             SCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred             CceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence            67899999999853             333444455569999999999864       345566666666666765 999


Q ss_pred             EEecCCCCC--hHHHHHHHHHHHHH
Q 026538          209 VLTKTDTVF--PIDVARRAMQIEEV  231 (237)
Q Consensus       209 v~NK~Dl~~--~~~~~~~~~~l~~~  231 (237)
                      |+||+|+.+  .....+..+.+...
T Consensus       311 VvNKiDl~~~~~~~~~ei~~~l~~~  335 (611)
T 3izq_1          311 AMNKMDNVDWSQQRFEEIKSKLLPY  335 (611)
T ss_dssp             EEECTTTTTTCHHHHHHHHHHHHHH
T ss_pred             EEecccccchhHHHHHHHHHHHHHH
Confidence            999999986  33333444444443

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.67  E-value=3.5e-16  Score=120.80  Aligned_cols=111  Identities=14%  Similarity=0.098  Sum_probs=70.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|+|||||+|+|++..   ......+++..   ..+...+  ..+.+|||||....      .    .+.
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~----~~~   83 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY------A----AIR   83 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC---CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC------H----HHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC---CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc------H----HHH
Confidence            34799999999999999999999874   22222222222   1222222  46899999997541      1    222


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      ..++..   +|++++|+|+........ ..++..+..    .++|+++|+||+|+.+
T Consensus        84 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  137 (187)
T 2a9k_A           84 DNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED  137 (187)
T ss_dssp             HHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred             HHHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            333333   899999999875322111 223333322    3789999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.67  E-value=1.6e-16  Score=123.93  Aligned_cols=114  Identities=16%  Similarity=0.111  Sum_probs=73.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|||||||+|+|++...........+.+.......   .+..+.+|||||+...          ..+...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~   93 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY----------RAITSA   93 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT----------CTTHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhh----------hhhhHH
Confidence            347999999999999999999998742111222223333222222   2456899999997542          112233


Q ss_pred             HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|++...+.. ...++..+..   .+.|+++|+||+|+..
T Consensus        94 ~~~~---~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~  144 (193)
T 2oil_A           94 YYRG---AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ  144 (193)
T ss_dssp             HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred             Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence            3333   89999999987542211 1344444443   3689999999999864

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.67  E-value=2.9e-16  Score=140.81  Aligned_cols=128  Identities=21%  Similarity=0.264  Sum_probs=89.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccccee--------------eccC------CCCce---EEEEEEEcCCeEEEEeCCCC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTSD------KPGLT---QTINFFKLGTKLCLVDLPGY  148 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~--------------~~~~------~~g~t---~~~~~~~~~~~~~liDTpG~  148 (237)
                      .++|+|+|++|+|||||+|+|+......              ...+      .+|+|   ....+...+..++||||||+
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~   92 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH   92 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence            4699999999999999999997321100              0000      12222   22344455788999999998


Q ss_pred             CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538          149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI  228 (237)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l  228 (237)
                      .+-.          .....++   ..+|++++|+|+..+.......++..+...++|+++|+||+|+.... ..+.++.+
T Consensus        93 ~df~----------~~~~~~l---~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~-~~~~l~ei  158 (528)
T 3tr5_A           93 ADFT----------EDTYRTL---TAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP-SIELLDEI  158 (528)
T ss_dssp             TTCC----------HHHHHGG---GGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC-HHHHHHHH
T ss_pred             hhHH----------HHHHHHH---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc-HHHHHHHH
Confidence            6511          1122223   34999999999999999999889988888899999999999996543 33445666


Q ss_pred             HHHHH
Q 026538          229 EEVIF  233 (237)
Q Consensus       229 ~~~l~  233 (237)
                      ++.++
T Consensus       159 ~~~l~  163 (528)
T 3tr5_A          159 ESILR  163 (528)
T ss_dssp             HHHHC
T ss_pred             HHhhC
Confidence            66554

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=9.8e-17  Score=126.90  Aligned_cols=115  Identities=11%  Similarity=-0.009  Sum_probs=70.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ++|+++|.+|||||||+|+|++........+..+......+...+  ..+.+|||||.....          .+...++ 
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~-   94 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD----------RLRPLSY-   94 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCT----------TTGGGGC-
T ss_pred             cEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH----------HHHHhhc-
Confidence            699999999999999999999874211111222222212222222  468999999975421          1111222 


Q ss_pred             ccccccEEEEEEeCCCCCC--hhHHHHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538          171 TRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~--~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~  220 (237)
                        ..+|++++|+|+....+  .....++..+...  +.|+++|+||+|+.....
T Consensus        95 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  146 (207)
T 2fv8_A           95 --PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH  146 (207)
T ss_dssp             --TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHH
T ss_pred             --CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcccc
Confidence              23899999999875321  2223455555543  799999999999976543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.66  E-value=1e-16  Score=125.25  Aligned_cols=113  Identities=12%  Similarity=0.026  Sum_probs=72.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce---EEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t---~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|||||||+|+|++...   .....+++   ....+...+  ..+.+|||||.....          .+.
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~   83 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAF---PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD----------RLR   83 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSC---CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST----------TTG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchh----------HHH
Confidence            446999999999999999999998732   22222222   111222223  468899999975421          111


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCChH
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~~~  219 (237)
                      ..++.   .+|++++|+|+....+...  ..++..+...  ++|+++|+||+|+....
T Consensus        84 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (194)
T 2atx_A           84 PLSYP---MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP  138 (194)
T ss_dssp             GGGCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH
T ss_pred             HHhcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccc
Confidence            22222   3899999999875422222  2455555554  79999999999997643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.66  E-value=1.4e-16  Score=124.34  Aligned_cols=114  Identities=17%  Similarity=0.118  Sum_probs=71.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|||||||+|+|++...........+.+........   ...+.+|||||....          ..+...
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~   89 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF----------RSITRS   89 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT----------SCCCHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhh----------hhhHHH
Confidence            3469999999999999999999987421112222333333322222   247899999996431          111223


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|++...+... ..++..+..   .+.|+++|+||+|+..
T Consensus        90 ~~~~---~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~  140 (191)
T 2a5j_A           90 YYRG---AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES  140 (191)
T ss_dssp             HHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence            3333   899999999875322221 334444443   3789999999999964

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.66  E-value=1.7e-16  Score=126.42  Aligned_cols=115  Identities=17%  Similarity=0.085  Sum_probs=71.5

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE--EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...++|+++|.+|||||||+|+|++........+..+.+......  .....+.+|||||....          ..+...
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~   94 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY----------DNVRPL   94 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG----------TTTGGG
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH----------HHHHHH
Confidence            355799999999999999999999874211111121211111111  12356899999996431          112222


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~  217 (237)
                      ++.   .+|++++|+|++...+...  ..++..+...  +.|+++|+||+|+..
T Consensus        95 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  145 (214)
T 3q3j_B           95 CYS---DSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT  145 (214)
T ss_dssp             GCT---TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred             HcC---CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence            333   3899999999886433222  3455555543  789999999999864

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.66  E-value=1.7e-15  Score=131.99  Aligned_cols=129  Identities=19%  Similarity=0.200  Sum_probs=87.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc---c----eeec--c------CCCCceEEEE---EEEcCCeEEEEeCCCCCCcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW---G----VVRT--S------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFAY  152 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~---~----~~~~--~------~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~  152 (237)
                      ..++|+++|++|+|||||+|+|++..   .    ....  .      ..+|.|.+..   +...+..+.+|||||+.+  
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~--   87 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD--   87 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--
Confidence            44799999999999999999999731   0    0000  0      1234444432   333467899999999853  


Q ss_pred             cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCCh-HHHHHHHHHHHH
Q 026538          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFP-IDVARRAMQIEE  230 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~-~~~~~~~~~l~~  230 (237)
                              +......++.   .+|++++|+|+..+...+..+++..+...++| +++|+||+|+... +......+++++
T Consensus        88 --------f~~~~~~~~~---~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~  156 (405)
T 2c78_A           88 --------YIKNMITGAA---QMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRD  156 (405)
T ss_dssp             --------GHHHHHHHHT---TCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHH---HCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence                    1112222332   39999999999988888888888888888899 8999999999853 323333334444


Q ss_pred             HH
Q 026538          231 VI  232 (237)
Q Consensus       231 ~l  232 (237)
                      .+
T Consensus       157 ~l  158 (405)
T 2c78_A          157 LL  158 (405)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.66  E-value=1.1e-16  Score=123.08  Aligned_cols=114  Identities=12%  Similarity=0.097  Sum_probs=66.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ..++|+++|.+|||||||+|+|++........+..+.+........    ...+.+|||||...          +.....
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~   76 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER----------FQSLGV   76 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH----------hhhhhH
Confidence            4579999999999999999999987421111222222222222222    24689999999532          112222


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-------cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~piilv~NK~Dl~~  217 (237)
                      .++   ..+|++++|+|+....+... ..++..+..       .+.|+++|+||+|+..
T Consensus        77 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  132 (182)
T 1ky3_A           77 AFY---RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE  132 (182)
T ss_dssp             CCS---TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred             HHh---hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence            222   34899999999875422111 233333322       4689999999999963

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.66  E-value=5e-17  Score=138.37  Aligned_cols=120  Identities=18%  Similarity=0.182  Sum_probs=80.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--EEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .++|+|+|.+|||||||+|+|++..  ..+++.+++|.+...  ...  +..+.+|||||+.+....      +..+...
T Consensus       158 la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~------~~~l~~~  229 (342)
T 1lnz_A          158 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ------GVGLGHQ  229 (342)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC------TTTTHHH
T ss_pred             cCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccc------cchhHHH
Confidence            4689999999999999999999874  345677777765432  222  378999999997431110      1112233


Q ss_pred             HHhccccccEEEEEEeCCC---CCChh-HHHHHHHHHh-----cCCcEEEEEecCCCCChH
Q 026538          168 YVSTRVSLKRVCLLIDTKW---GVKPR-DHELISLMER-----SQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~---~~~~~-~~~~~~~l~~-----~~~piilv~NK~Dl~~~~  219 (237)
                      |+.....++++++|+|++.   .-... ...+...+..     ..+|+++|+||+|+....
T Consensus       230 fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~  290 (342)
T 1lnz_A          230 FLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA  290 (342)
T ss_dssp             HHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred             HHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH
Confidence            3444444999999999875   21111 2344555554     368999999999998654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.66  E-value=6.1e-17  Score=126.60  Aligned_cols=111  Identities=16%  Similarity=0.019  Sum_probs=70.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|+|||||+|+|++..   ......+++..   ......  ...+.+|||||....          ..+.
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~   88 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGE---IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY----------DRLR   88 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTG
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCC---CCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH----------HHHh
Confidence            34799999999999999999999884   22222222221   122222  345699999996431          1112


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF  217 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~  217 (237)
                      ..++.   .+|++++|+|+....+...  ..++..+...  +.|+++|+||+|+..
T Consensus        89 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  141 (194)
T 3reg_A           89 PLSYA---DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK  141 (194)
T ss_dssp             GGGCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred             Hhhcc---CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence            22222   3899999999876422222  2344444443  689999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.66  E-value=2.4e-16  Score=120.96  Aligned_cols=111  Identities=18%  Similarity=0.161  Sum_probs=70.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ++|+++|.+|+|||||+|+|++...  .....+.++.+..  .... +  ..+.+|||||....          ......
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~   82 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------RSLIPS   82 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH----------HHHHHH
Confidence            6999999999999999999998732  2222333333322  2222 2  47899999996431          111223


Q ss_pred             HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      ++..   +|++++|+|++...+.. ...++..+..   .+.|+++|+||+|+.+.
T Consensus        83 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  134 (179)
T 2y8e_A           83 YIRD---STVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK  134 (179)
T ss_dssp             HHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred             HhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence            3332   89999999987532211 1233333332   47899999999998643

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.66  E-value=2e-15  Score=116.07  Aligned_cols=107  Identities=9%  Similarity=0.016  Sum_probs=68.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ...+|+++|.+|||||||+|+|++.. .....+..+......+...  ...+.+|||||...           .    .|
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~----~~   69 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----------A----KF   69 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSC-CCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----------H----HH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----------h----HH
Confidence            34699999999999999999999873 2323333332222222222  24688999999653           1    12


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHH---h---cCCcEEEEEecCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---R---SQTKYQVVLTKTDTV  216 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~---~~~piilv~NK~Dl~  216 (237)
                      +..   +|++++|+|.+...+... ..+++++.   .   .++|+++|+||+|+.
T Consensus        70 ~~~---~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (178)
T 2iwr_A           70 SGW---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  121 (178)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred             HHh---CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            222   899999999875422222 22222332   2   368999999999983

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.66  E-value=6.4e-16  Score=134.78  Aligned_cols=128  Identities=23%  Similarity=0.293  Sum_probs=84.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccc-eeeccCCCCceEEEEEEE-------------c-------------CCeEEEE
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK-------------L-------------GTKLCLV  143 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~-~~~~~~~~g~t~~~~~~~-------------~-------------~~~~~li  143 (237)
                      ..++|+++|..++|||||+++|++... .......+|.|.+..+..             .             ...+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            457999999999999999999997521 011122345555432211             0             1469999


Q ss_pred             eCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-ChhHHHHHHHHHhcCC-cEEEEEecCCCCChHHH
Q 026538          144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       144 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-piilv~NK~Dl~~~~~~  221 (237)
                      ||||+.             .+...+......+|++++|+|+..+. ..+..+.+..+...+. |+++|+||+|+.+..+.
T Consensus        87 DtPGh~-------------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~  153 (408)
T 1s0u_A           87 DSPGHE-------------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQA  153 (408)
T ss_dssp             ECSSHH-------------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTT
T ss_pred             ECCCHH-------------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHH
Confidence            999952             33445556666689999999999876 6666676666665554 79999999999865433


Q ss_pred             HHHHHHHHHH
Q 026538          222 ARRAMQIEEV  231 (237)
Q Consensus       222 ~~~~~~l~~~  231 (237)
                      ....+++++.
T Consensus       154 ~~~~~~i~~~  163 (408)
T 1s0u_A          154 EENYEQIKEF  163 (408)
T ss_dssp             TTHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            2333344433

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.66  E-value=8e-17  Score=123.84  Aligned_cols=113  Identities=19%  Similarity=0.133  Sum_probs=71.9

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEE-cC--CeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ...++|+++|.+|||||||+|+|++...  .....++.+.+..  ... .+  ..+.+|||||.....          .+
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~   74 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTF--SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR----------TI   74 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS----------SC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCC--CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh----------hh
Confidence            3457999999999999999999998742  2333444444332  222 23  568999999954311          11


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVF  217 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~piilv~NK~Dl~~  217 (237)
                      ...++   ..+|++++|+|++.+.+... ..++..+...  +.|+++|+||+|+.+
T Consensus        75 ~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  127 (181)
T 3tw8_B           75 TSTYY---RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE  127 (181)
T ss_dssp             CGGGG---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred             HHHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence            11222   23899999999876422222 2344444332  589999999999864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.66  E-value=8.7e-17  Score=127.05  Aligned_cols=114  Identities=16%  Similarity=0.023  Sum_probs=72.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|||||||+++|++..   ......+++.+..   ....+  ..+.+|||||....          ..+.
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~   95 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRLR   95 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHSC---CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG----------TTTG
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhCC---CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh----------HHHH
Confidence            45799999999999999999999873   2233333433321   12223  34569999997431          1112


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhHH--HHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~Dl~~~~~  220 (237)
                      ..++   ..+|++++|+|++...+....  .++..+...  +.|+++|+||+|+.....
T Consensus        96 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  151 (204)
T 4gzl_A           96 PLSY---PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD  151 (204)
T ss_dssp             GGGC---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred             HHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence            2222   238999999998864332222  455555554  799999999999976544

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.66  E-value=2.5e-16  Score=119.96  Aligned_cols=113  Identities=15%  Similarity=0.117  Sum_probs=68.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|.+|+|||||+|+|++........+..+.+........ +  ..+.+|||||...          +..+...+
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~   75 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER----------FHALGPIY   75 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CCS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHh----------hhhhHHHH
Confidence            469999999999999999999987321111222222222222222 2  3688999999643          11122222


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                         ...+|++++|+|++...+... ..++..+..   .+.|+++|+||+|+.+
T Consensus        76 ---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  125 (170)
T 1z08_A           76 ---YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK  125 (170)
T ss_dssp             ---STTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred             ---hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence               234899999999875422111 233333332   4689999999999864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.66  E-value=4.3e-15  Score=127.33  Aligned_cols=125  Identities=22%  Similarity=0.244  Sum_probs=83.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccc--hHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK--EEVKDAWEEL  164 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~--~~~~~~~~~~  164 (237)
                      ...++|+++|.+|||||||+|+|++..  ..+...+++|.+.....   .+..+.+|||||+.+....  ....   ...
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~~  239 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIE---KQA  239 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHH---HHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHH---HHH
Confidence            466899999999999999999999984  44566677776654432   3567999999998653211  1111   111


Q ss_pred             HHHHHhccccccEEEEEEeCCCCC--ChhH-HHHHHHHHh-c-CCcEEEEEecCCCCChHHHH
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGV--KPRD-HELISLMER-S-QTKYQVVLTKTDTVFPIDVA  222 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~--~~~~-~~~~~~l~~-~-~~piilv~NK~Dl~~~~~~~  222 (237)
                      ...   ....+|.+++|+|++...  .... ..++..+.. . +.|+++|+||+|+....+..
T Consensus       240 ~~~---~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~  299 (357)
T 2e87_A          240 ILA---LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIK  299 (357)
T ss_dssp             HHG---GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHH
T ss_pred             HHH---HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHH
Confidence            111   112389999999976532  3222 345555543 2 79999999999998766543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.66  E-value=1.4e-16  Score=123.02  Aligned_cols=115  Identities=15%  Similarity=-0.047  Sum_probs=71.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .++|+++|.+|+|||||+++|++........+..+..........  ...+.+|||||....          ..+...++
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~   74 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLRPLSY   74 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG----------TTTGGGGC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhH----------HHHHHHhc
Confidence            468999999999999999999976321111111122211122222  345779999997431          11111222


Q ss_pred             hccccccEEEEEEeCCCCCChhHH--HHHHHHHhc--CCcEEEEEecCCCCChH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~Dl~~~~  219 (237)
                         ..+|++++|+|++.+.+....  .++..+...  +.|+++|+||+|+.+..
T Consensus        75 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  125 (186)
T 1mh1_A           75 ---PQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK  125 (186)
T ss_dssp             ---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred             ---cCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc
Confidence               238999999998764222222  355555543  78999999999987543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.65  E-value=2.7e-16  Score=121.71  Aligned_cols=112  Identities=14%  Similarity=0.153  Sum_probs=71.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|||||||+|+|++...  .....+..+.+.  ..... +  ..+.+|||||...          +....
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~   76 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEKKF--KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER----------FRSVT   76 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSC--CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHH
Confidence            347999999999999999999998742  222233333332  22222 2  4789999999643          12223


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~  217 (237)
                      ..++.   .+|++++|+|++...+... ..++..+.   ..+.|+++|+||+|+..
T Consensus        77 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  129 (186)
T 2bme_A           77 RSYYR---GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA  129 (186)
T ss_dssp             HTTST---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             HHHHh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence            33333   3999999999876322211 23333333   34789999999999863

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.65  E-value=3.7e-16  Score=135.54  Aligned_cols=87  Identities=22%  Similarity=0.158  Sum_probs=46.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE------------------------c---CCeEEEEeC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------L---GTKLCLVDL  145 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~------------------------~---~~~~~liDT  145 (237)
                      .+|+++|.+|||||||+|+|++..  ..+++.|++|.+.....                        .   ...+.+|||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            379999999999999999999984  66788888887543211                        1   246899999


Q ss_pred             CCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC
Q 026538          146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG  187 (237)
Q Consensus       146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~  187 (237)
                      ||+.....      ....+...++.....+|++++|+|++.+
T Consensus        79 pG~~~~a~------~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAH------EGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchh------hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            99854211      1123445555666779999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.65  E-value=1.9e-16  Score=125.44  Aligned_cols=117  Identities=17%  Similarity=0.001  Sum_probs=72.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..++|+++|.+|+|||||+++|++........+..+......+...+  ..+.+|||||.....          .+...+
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~   77 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYS----------RLRPLS   77 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCC----------C--CGG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHH----------HHHHhh
Confidence            44799999999999999999999873211111222211111222222  478999999975411          112222


Q ss_pred             HhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~~~~  220 (237)
                      +.   .+|++++|+|..+..+...  ..++..+...  +.|+++|+||+|+.....
T Consensus        78 ~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  130 (212)
T 2j0v_A           78 YR---GADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKG  130 (212)
T ss_dssp             GT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred             cc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcc
Confidence            32   3899999999875422222  2455555543  789999999999875443

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.3e-16  Score=136.99  Aligned_cols=119  Identities=18%  Similarity=0.226  Sum_probs=83.4

Q ss_pred             CCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      .+.+..+|+++|.||||||||+|+|++..  +.+++.|++|.+...   ...+..+.++||||+.......      ..+
T Consensus        68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~------~~~  139 (376)
T 4a9a_A           68 ARTGVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG------RGR  139 (376)
T ss_dssp             CBCSSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----------CH
T ss_pred             eecCCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh------hHH
Confidence            34567899999999999999999999984  678899999998753   3347889999999986532211      112


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHh-----cCCcEEEEEecCCC
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDT  215 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-----~~~piilv~NK~Dl  215 (237)
                      ...++.....+|++++|+|+++++... ..+...+..     ...|.++++||+|.
T Consensus       140 g~~~l~~i~~ad~il~vvD~~~p~~~~-~~i~~EL~~~~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          140 GKQVIAVARTCNLLFIILDVNKPLHHK-QIIEKELEGVGIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTSHHHHH-HHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred             HHHHHHHHHhcCccccccccCccHHHH-HHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence            233444444599999999998643221 122233333     25688999999996

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=3.8e-16  Score=123.32  Aligned_cols=112  Identities=20%  Similarity=0.223  Sum_probs=71.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|||||||+|+|++...  .....+..+.+.  ..... +  ..+.+|||||...          +..+.
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~   92 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLF--PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER----------FRSIT   92 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSC--CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCC--CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHH
Confidence            347999999999999999999998732  222222222232  12222 2  4689999999642          12223


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ..++.   .+|++++|+|++...+... ..++..+..   .+.|+++|+||+|+..
T Consensus        93 ~~~~~---~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~  145 (201)
T 2ew1_A           93 QSYYR---SANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE  145 (201)
T ss_dssp             GGGST---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             HHHHh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence            33333   3999999999875322111 234444433   3689999999999864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.65  E-value=8.4e-16  Score=121.08  Aligned_cols=114  Identities=18%  Similarity=0.187  Sum_probs=70.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|||||||+|+|++........+..+.......... +  ..+.+|||||...          +..+...
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   97 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER----------FRTITQS   97 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGG----------GHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh----------HHHHHHH
Confidence            3579999999999999999999987321111111111111122222 2  4799999999642          1233344


Q ss_pred             HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|++...+.. ...++..+..   .+.|+++|+||+|+..
T Consensus        98 ~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~  148 (201)
T 2hup_A           98 YYRS---ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE  148 (201)
T ss_dssp             HHTT---CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence            4444   89999999987532211 1244444443   4689999999999964

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.65  E-value=5e-16  Score=133.64  Aligned_cols=114  Identities=19%  Similarity=0.256  Sum_probs=81.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      +|+++|.+|+|||||+++|+..          |+|.+..   +...+..+.+|||||+.+-     .    ..+. .++ 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~f-----~----~~~~-~~~-   81 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPKT-----L----KSLI-TAL-   81 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTTC-----H----HHHH-HHH-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHHH-----H----HHHH-HHH-
Confidence            8999999999999999999832          1222222   2223678999999998641     1    1111 122 


Q ss_pred             ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcE-EEEEe-cCCCCChHHHHHHHHHHHHHH
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT-KTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pi-ilv~N-K~Dl~~~~~~~~~~~~l~~~l  232 (237)
                        ..+|++++|+| ..+...+..+++..+...++|. ++|+| |+|+ +.+......+++++.+
T Consensus        82 --~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l  141 (370)
T 2elf_A           82 --NISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVIT  141 (370)
T ss_dssp             --HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHT
T ss_pred             --HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHH
Confidence              23999999999 8888888888888888888898 99999 9999 6655555555555544

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.65  E-value=2.3e-16  Score=124.19  Aligned_cols=116  Identities=10%  Similarity=-0.024  Sum_probs=71.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .++|+++|.+|||||||+|+|++........+..+......+...  ...+.+|||||....          ..+...++
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~   94 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY----------DRLRPLSY   94 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGG----------TTTGGGGC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhH----------HHHHHHhc
Confidence            369999999999999999999987421111111111111122222  246899999996431          11111222


Q ss_pred             hccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~~~~  220 (237)
                         ..+|++++|+|.....+...  ..++..+...  +.|+++|+||+|+.....
T Consensus        95 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  146 (201)
T 2gco_A           95 ---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH  146 (201)
T ss_dssp             ---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH
T ss_pred             ---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc
Confidence               23899999999875322211  3455555543  799999999999986543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.65  E-value=1.1e-16  Score=127.86  Aligned_cols=115  Identities=13%  Similarity=0.048  Sum_probs=78.0

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ...++|+++|.+|||||||+|+++.........+..|++........   +..+.+|||||.....          .+..
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~   82 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG----------GLRD   82 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTS----------CCCH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHh----------HHHH
Confidence            34579999999999999999996654334556677777776654433   3578999999964311          1122


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~piilv~NK~Dl~~  217 (237)
                      .++..   +|++++|+|++...+... ..++..+...  +.|+++|+||+|+..
T Consensus        83 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  133 (221)
T 3gj0_A           83 GYYIQ---AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD  133 (221)
T ss_dssp             HHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred             HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence            33332   899999999886422222 2344444432  789999999999864

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.65  E-value=4.3e-15  Score=137.25  Aligned_cols=125  Identities=20%  Similarity=0.258  Sum_probs=90.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE-----------------------------------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-----------------------------------------  129 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~-----------------------------------------  129 (237)
                      ..|+|+|+|.+|+|||||+|+|+|.. ..+.+..+ +|+                                         
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~-~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~  127 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  127 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSC-CSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC-ccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence            57899999999999999999999973 21111111 111                                         


Q ss_pred             -------------EEEEE-EcCCeEEEEeCCCCCCcc---cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH
Q 026538          130 -------------TINFF-KLGTKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD  192 (237)
Q Consensus       130 -------------~~~~~-~~~~~~~liDTpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~  192 (237)
                                   .+.++ .....++|+||||+....   ....+...+..++..|+.  ..+|++++|+|++.++...+
T Consensus       128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d  205 (772)
T 3zvr_A          128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSD  205 (772)
T ss_dssp             HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCH
T ss_pred             hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhH
Confidence                         01111 123468999999987632   123345567778888876  45899999999998877777


Q ss_pred             H-HHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          193 H-ELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       193 ~-~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                      . .+++.+...+.|+++|+||+|+++..
T Consensus       206 ~l~ll~~L~~~g~pvIlVlNKiDlv~~~  233 (772)
T 3zvr_A          206 ALKIAKEVDPQGQRTIGVITKLDLMDEG  233 (772)
T ss_dssp             HHHHHHHHCTTCSSEEEEEECTTSSCTT
T ss_pred             HHHHHHHHHhcCCCEEEEEeCcccCCcc
Confidence            6 78888888889999999999998653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.65  E-value=1.7e-16  Score=124.95  Aligned_cols=112  Identities=15%  Similarity=0.089  Sum_probs=69.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|+|||||+|+|++...  .....+..+.+.  ..... +  ..+.+|||||.....          .+.
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~   74 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ----------SLG   74 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCC--CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS----------CSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH----------HhH
Confidence            457999999999999999999998842  122222222332  22222 2  468999999964311          111


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-------cCCcEEEEEecCCCCC
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~piilv~NK~Dl~~  217 (237)
                      ..++   ..+|++++|+|++.+.+... ..++..+..       .+.|+++|+||+|+..
T Consensus        75 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  131 (207)
T 1vg8_A           75 VAFY---RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN  131 (207)
T ss_dssp             CGGG---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred             HHHH---hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence            1222   23899999999875422111 223333321       3689999999999974

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=2.3e-16  Score=123.05  Aligned_cols=114  Identities=16%  Similarity=0.127  Sum_probs=74.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|||||||+|+|++........+..+++.......   .+..+.+|||||..          .+..+...
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~   91 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE----------RYRTITTA   91 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH----------HCHHHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHHH
Confidence            457999999999999999999998742122222223333333222   24579999999942          12334444


Q ss_pred             HHhccccccEEEEEEeCCCCCCh-hHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|++...+. ....++..+..   .+.|+++|+||+|+..
T Consensus        92 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  142 (191)
T 3dz8_A           92 YYRG---AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE  142 (191)
T ss_dssp             HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             HHcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence            5544   8999999998753211 12345555544   4789999999999854

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.64  E-value=8.4e-16  Score=117.96  Aligned_cols=114  Identities=16%  Similarity=0.179  Sum_probs=70.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEcC---CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ..++|+++|.+|||||||+|+|++........+..+...... +...+   ..+.+|||||.....          .+..
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~   74 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG----------KMLD   74 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC----------TTHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc----------chhh
Confidence            347999999999999999999998742111122222222111 22222   579999999965311          1222


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-----cCCc-EEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTK-YQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p-iilv~NK~Dl~~  217 (237)
                      .++..   +|++++|+|++...+... ..++..+..     .+.| +++|+||+|+.+
T Consensus        75 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~  129 (178)
T 2hxs_A           75 KYIYG---AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH  129 (178)
T ss_dssp             HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred             HHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence            33333   899999999876422211 234444443     2456 899999999864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.64  E-value=2e-15  Score=118.21  Aligned_cols=113  Identities=14%  Similarity=0.033  Sum_probs=70.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..++|+++|.+|||||||+|+|++........+..+......+...  ...+.+|||||...   .        .....+
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---~--------~~~~~~   95 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED---T--------IQREGH   95 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---C--------HHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc---c--------cchhhh
Confidence            4579999999999999999999987421111122222211112222  35689999999764   1        112223


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|++...+... ..++..+.    ..+.|+++|+||+|+..
T Consensus        96 ~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  146 (196)
T 2atv_A           96 MRW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH  146 (196)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred             hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence            332   899999999875322111 22333333    24789999999999864

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.64  E-value=1.3e-15  Score=118.30  Aligned_cols=115  Identities=13%  Similarity=0.091  Sum_probs=68.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccC-CCCceEEEEEE--------EcCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFF--------KLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g~t~~~~~~--------~~~~~~~liDTpG~~~~~~~~~~~~~~~~  163 (237)
                      .+|+++|++|||||||+|+|++... ..... .+....+....        .....+.+|||||...          +..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~-~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~   71 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKK-SDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE----------FYS   71 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHHH----------HHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-ccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHH----------HHH
Confidence            6899999999999999999998521 11111 12122222111        1256789999999531          122


Q ss_pred             HHHHHHhccccccEEEEEEeCCCCCCh--hHHHHHHHHHh--cCCcEEEEEecCCCCChHHH
Q 026538          164 LVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMER--SQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~--~~~piilv~NK~Dl~~~~~~  221 (237)
                      +...|+..   ++++++|+|.+.+...  ....++..+..  .+.|+++|+||+|+......
T Consensus        72 ~~~~~~~~---~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  130 (184)
T 2zej_A           72 THPHFMTQ---RALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQR  130 (184)
T ss_dssp             TSHHHHHH---SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHH
T ss_pred             hhHHHccC---CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhh
Confidence            22333333   7899999998754211  11334444432  36899999999999876544

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.64  E-value=4e-16  Score=122.51  Aligned_cols=113  Identities=14%  Similarity=0.022  Sum_probs=69.0

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ...++|+++|.+|||||||+|+|++..   ......+++.+.   .+...+  ..+.+|||||......          +
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~   84 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNG---YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK----------L   84 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS----------S
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH----------H
Confidence            356799999999999999999999873   223333333221   222223  3577999999754211          1


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhHH--HHHHHHHhc--CCcEEEEEecCCCCCh
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFP  218 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~Dl~~~  218 (237)
                      ...++.   .+|++++|+|++...+....  .++..+...  +.|+++|+||+|+...
T Consensus        85 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  139 (201)
T 2q3h_A           85 RPLCYT---NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED  139 (201)
T ss_dssp             GGGGGT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred             hHhhcC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence            112222   38999999998754322222  355545443  7899999999998753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.64  E-value=1.5e-16  Score=125.22  Aligned_cols=112  Identities=15%  Similarity=0.066  Sum_probs=69.4

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-E-EE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I-NF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-~-~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ...++|+++|.+|||||||+|+|++... .  .....++.. . ..   ......+.+|||||......          +
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~   88 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEF-S--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI----------L   88 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCC-C--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC----------C
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCC-C--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH----------H
Confidence            4567999999999999999999998842 2  222222221 1 11   11246689999999654211          1


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      ...++.   .+|++++|+|+....+... ..++..+..    .++|+++|+||+|+..
T Consensus        89 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  143 (201)
T 3oes_A           89 PYSFII---GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP  143 (201)
T ss_dssp             CGGGTT---TCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred             HHHHHh---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence            112222   3899999999875321111 234444433    2689999999999864

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.64  E-value=1.4e-15  Score=130.55  Aligned_cols=123  Identities=23%  Similarity=0.316  Sum_probs=80.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce------------------------------------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT------------------------------------------  128 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t------------------------------------------  128 (237)
                      ..|.|+|+|.+|||||||+|+|+|.. +....... +|                                          
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~-~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~  110 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKD-FLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE  110 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSC-CSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCC-cCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence            56899999999999999999999973 21111100 00                                          


Q ss_pred             ---------------EEEEEEE-cCCeEEEEeCCCCCCccc---chHHHHHHHHHHHHHHhccccccEEEEEEeCCC-CC
Q 026538          129 ---------------QTINFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-GV  188 (237)
Q Consensus       129 ---------------~~~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~-~~  188 (237)
                                     ..+.+.. ....+.+|||||+.....   .......+..+...|+..   +|++++++|+.. ..
T Consensus       111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~---~d~iilvv~~~~~~~  187 (360)
T 3t34_A          111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK---PNCIILAISPANQDL  187 (360)
T ss_dssp             HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS---SSEEEEEEEETTSCG
T ss_pred             HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc---CCeEEEEeecccCCc
Confidence                           0111111 145699999999876321   223445556677777665   899999998543 22


Q ss_pred             -ChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          189 -KPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       189 -~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                       ......+++.+...+.|+++|+||+|+.++
T Consensus       188 ~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          188 ATSDAIKISREVDPSGDRTFGVLTKIDLMDK  218 (360)
T ss_dssp             GGCHHHHHHHHSCTTCTTEEEEEECGGGCCT
T ss_pred             CCHHHHHHHHHhcccCCCEEEEEeCCccCCC
Confidence             223355666666668899999999999754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.64  E-value=3.3e-16  Score=123.51  Aligned_cols=113  Identities=19%  Similarity=0.151  Sum_probs=71.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce--EEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t--~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|+|||||+|+|++...  .....+..+  ........ +  ..+.+|||||.....          .+.
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~   74 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR----------TIT   74 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCC--CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT----------CCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHH----------HHH
Confidence            347999999999999999999998742  222223222  22222222 2  479999999965421          111


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~  218 (237)
                      ..++   ..+|++++|+|++...+... ..++..+..   .+.|+++|+||+|+...
T Consensus        75 ~~~~---~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  128 (206)
T 2bcg_Y           75 SSYY---RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK  128 (206)
T ss_dssp             GGGG---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred             HHhc---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence            1222   23899999999876422222 234444433   36899999999999753

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.64  E-value=1e-15  Score=134.60  Aligned_cols=130  Identities=18%  Similarity=0.234  Sum_probs=81.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceee-----------------------------ccCCCCceEEEEE---EEcCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-----------------------------TSDKPGLTQTINF---FKLGT  138 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-----------------------------~~~~~g~t~~~~~---~~~~~  138 (237)
                      ..++|+++|.+|+|||||+++|+.......                             ....+|+|.+..+   ...+.
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~   84 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   84 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence            346999999999999999999986410000                             0113566766542   23467


Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-------CChhHHHHHHHHHhcCC-cEEEEE
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL  210 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~-piilv~  210 (237)
                      .+.+|||||+.+          +..   ........+|++++|+|+..+       +..+..+.+..+...++ |+++|+
T Consensus        85 ~~~iiDtpG~~~----------f~~---~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi  151 (435)
T 1jny_A           85 FFTIIDAPGHRD----------FVK---NMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAV  151 (435)
T ss_dssp             EEEECCCSSSTT----------HHH---HHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred             EEEEEECCCcHH----------HHH---HHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence            899999999864          112   222333459999999999876       55566666666666676 599999


Q ss_pred             ecCCCCC----hHHHHHHHHHHHHHHH
Q 026538          211 TKTDTVF----PIDVARRAMQIEEVIF  233 (237)
Q Consensus       211 NK~Dl~~----~~~~~~~~~~l~~~l~  233 (237)
                      ||+|+.+    ++......+++++.+.
T Consensus       152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~  178 (435)
T 1jny_A          152 NKMDLTEPPYDEKRYKEIVDQVSKFMR  178 (435)
T ss_dssp             ECGGGSSSTTCHHHHHHHHHHHHHHHH
T ss_pred             EcccCCCccccHHHHHHHHHHHHHHHH
Confidence            9999986    2333444555555443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.63  E-value=1.4e-16  Score=123.04  Aligned_cols=111  Identities=17%  Similarity=0.188  Sum_probs=52.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEE-cC--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .++|+++|.+|||||||+|+|++..  ......+.++.+..  ... .+  ..+.+|||||...          +..+..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~   75 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDA--FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITT   75 (183)
T ss_dssp             EEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh----------hhhhHH
Confidence            4799999999999999999999763  11222222333322  112 23  5789999999642          112222


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      .++   ..+|++++|+|++...+... ..++..+..   .+.|+++|+||+|+..
T Consensus        76 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  127 (183)
T 2fu5_C           76 AYY---RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND  127 (183)
T ss_dssp             TTT---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred             HHH---hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence            222   23899999999876422111 234444443   3689999999999974

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.63  E-value=4.8e-15  Score=115.19  Aligned_cols=108  Identities=14%  Similarity=0.080  Sum_probs=69.6

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...++|+++|.+|||||||+|++++........+..+ .....+...+  ..+.+|||||....          .     
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~-----   81 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFKKEIVVDGQSYLLLIRDEGGPPEL----------Q-----   81 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EEEEEEEETTEEEEEEEEECSSSCCH----------H-----
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eEEEEEEECCEEEEEEEEECCCChhh----------h-----
Confidence            3457999999999999999999998742111112111 1111222223  45788999997531          1     


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTV  216 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~  216 (237)
                      |+..   +|++++|+|.++..+... ..++..+..    .+.|+++|+||+|+.
T Consensus        82 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  132 (184)
T 3ihw_A           82 FAAW---VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS  132 (184)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred             eecC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            2222   899999999886432222 345555544    368999999999984

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.63  E-value=2.6e-15  Score=128.83  Aligned_cols=138  Identities=22%  Similarity=0.285  Sum_probs=75.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCC------CCceEEEEEEE-----cC--CeEEEEeCCCCCCcccc----
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLTQTINFFK-----LG--TKLCLVDLPGYGFAYAK----  154 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~------~g~t~~~~~~~-----~~--~~~~liDTpG~~~~~~~----  154 (237)
                      .++|+++|++|+|||||+|+|++.. .......      ...|.......     .+  ..+.+|||||+++....    
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~-~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTD-LYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCC-C---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCC-CCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            3689999999999999999998763 2211111      11222222111     12  36899999999653211    


Q ss_pred             hHHHHHHHHHHHHHHhcccc----------ccEEEEEEeC-CCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHH
Q 026538          155 EEVKDAWEELVKEYVSTRVS----------LKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  223 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~----------~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~  223 (237)
                      ..+...+......|+.....          +++++|+++. .+++...+..+++.+. .++|+++|+||+|+.+..++..
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~  194 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER  194 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHH
Confidence            11111111122244433222          3578888875 6677787777777764 4799999999999998777665


Q ss_pred             HHHHHHHH
Q 026538          224 RAMQIEEV  231 (237)
Q Consensus       224 ~~~~l~~~  231 (237)
                      ..+.+.+.
T Consensus       195 ~k~~i~~~  202 (361)
T 2qag_A          195 LKKRILDE  202 (361)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44454443

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.63  E-value=3.2e-16  Score=123.33  Aligned_cols=112  Identities=19%  Similarity=0.201  Sum_probs=48.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE-EE--EEEE-c----CCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFK-L----GTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~-~~--~~~~-~----~~~~~liDTpG~~~~~~~~~~~~~~~~  163 (237)
                      .++|+++|.+|||||||+|+|++.. ........+++. +.  .... .    ...+.+|||||...          +..
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~   88 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSKG-SKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL----------YKE   88 (208)
T ss_dssp             EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHH----------HHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC-CcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH----------HHH
Confidence            4699999999999999999999872 112222222221 22  1122 2    23689999999631          222


Q ss_pred             HHHHHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh------cCCcEEEEEecCCCCC
Q 026538          164 LVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~------~~~piilv~NK~Dl~~  217 (237)
                      +...++   ..+|++++|+|++.+.+.. ...++..+..      .+.|+++|+||+|+..
T Consensus        89 ~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           89 QISQYW---NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             HHSTTC---CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             HHHHHH---hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence            333333   3489999999987643211 2344555543      4789999999999976

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.63  E-value=1.1e-15  Score=116.38  Aligned_cols=112  Identities=15%  Similarity=0.080  Sum_probs=63.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .++|+++|.+|||||||+|+|++... ..... +.++.+.   .+...  ...+.+|||||......         .+..
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~   70 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQG-DHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG---------WLQD   70 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC-----------------C
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccC-ccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccch---------hhhh
Confidence            36899999999999999999987632 21111 1112211   11112  35688999999753100         0112


Q ss_pred             HHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      .++..   +|++++|+|.+...+.. ...++..+..    .++|+++|+||+|+.+
T Consensus        71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  123 (169)
T 3q85_A           71 HCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR  123 (169)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred             hhhcc---CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence            22222   89999999987532111 1233333332    2789999999999863

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.63  E-value=5e-16  Score=123.46  Aligned_cols=112  Identities=16%  Similarity=0.108  Sum_probs=69.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-----EEEEc----------CCeEEEEeCCCCCCcccch
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKL----------GTKLCLVDLPGYGFAYAKE  155 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-----~~~~~----------~~~~~liDTpG~~~~~~~~  155 (237)
                      ..++|+++|.+|||||||+|+|++.....  ...+..+.+.     .+...          ...+.||||||..      
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------   95 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTDNKFNP--KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------   95 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCC--EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhcCCCCc--CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence            34799999999999999999999873211  1111111111     11111          3569999999942      


Q ss_pred             HHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                          .+......++..   +|++++|+|++...+... ..++..+..    .+.|+++|+||+|+..
T Consensus        96 ----~~~~~~~~~~~~---~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~  155 (217)
T 2f7s_A           96 ----RFRSLTTAFFRD---AMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD  155 (217)
T ss_dssp             ----HHHHHHHHHHTT---CCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred             ----hHHhHHHHHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence                123344445544   899999999875322111 223333322    3689999999999864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.63  E-value=1.5e-16  Score=122.57  Aligned_cols=114  Identities=16%  Similarity=-0.005  Sum_probs=66.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-----EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-----~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|+|||||+|++++...   .....+++.+.     ........+.+|||||....          ..+.
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~   73 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTF---PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY----------NRLR   73 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCC---C----------CBCCCC-------CEEECCCC-CTT----------TTTG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhh----------hhhH
Confidence            457999999999999999999998731   22222222211     11122355779999996531          1112


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhHH--HHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~Dl~~~~~  220 (237)
                      ..++.   .+|++++|+|+....+....  .++..+...  +.|+++|+||+|+.....
T Consensus        74 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  129 (182)
T 3bwd_D           74 PLSYR---GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQ  129 (182)
T ss_dssp             GGGGT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred             Hhhcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcc
Confidence            22222   38999999998754222221  355555542  789999999999875543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.63  E-value=3.2e-16  Score=138.55  Aligned_cols=128  Identities=20%  Similarity=0.220  Sum_probs=83.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccccee-----------------------eccC------CCCceEEEE---EEEcCCe
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------RTSD------KPGLTQTIN---FFKLGTK  139 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~-----------------------~~~~------~~g~t~~~~---~~~~~~~  139 (237)
                      .++|+++|.+|+|||||+|+|++.....                       .+.+      .+|.|.+..   +...+..
T Consensus         7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~   86 (458)
T 1f60_A            7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   86 (458)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence            4699999999999999999998641000                       0001      245555432   2333567


Q ss_pred             EEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCCh-------hHHHHHHHHHhcCCc-EEEEEe
Q 026538          140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDHELISLMERSQTK-YQVVLT  211 (237)
Q Consensus       140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~-------~~~~~~~~l~~~~~p-iilv~N  211 (237)
                      +.||||||+.+             +..........+|++++|+|+..+..+       +..+.+..+...++| +++|+|
T Consensus        87 ~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviN  153 (458)
T 1f60_A           87 VTVIDAPGHRD-------------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVN  153 (458)
T ss_dssp             EEEEECCCCTT-------------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEEECCCcHH-------------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEE
Confidence            99999999753             222233334459999999999865322       455555556666776 999999


Q ss_pred             cCCCCC--hHHHHHHHHHHHHHH
Q 026538          212 KTDTVF--PIDVARRAMQIEEVI  232 (237)
Q Consensus       212 K~Dl~~--~~~~~~~~~~l~~~l  232 (237)
                      |+|+..  ++......+++++.+
T Consensus       154 K~Dl~~~~~~~~~~i~~~~~~~l  176 (458)
T 1f60_A          154 KMDSVKWDESRFQEIVKETSNFI  176 (458)
T ss_dssp             CGGGGTTCHHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHHHHHHHHH
Confidence            999973  444444455555443

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.63  E-value=1.8e-15  Score=135.71  Aligned_cols=128  Identities=17%  Similarity=0.195  Sum_probs=86.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccccee--------------ecc------CCCCceEE---EEEEEcCCeEEEEeCCCC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTS------DKPGLTQT---INFFKLGTKLCLVDLPGY  148 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~--------------~~~------~~~g~t~~---~~~~~~~~~~~liDTpG~  148 (237)
                      .++|+++|++|+|||||+++|+......              .+.      ..+|.|..   ..+...+..+.||||||+
T Consensus        13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~   92 (529)
T 2h5e_A           13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH   92 (529)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence            3699999999999999999999642111              001      12222221   233445778999999998


Q ss_pred             CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538          149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI  228 (237)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l  228 (237)
                      .+-          ......++   ..+|++++|+|+..+.......++..+...++|+++|+||+|+..... .+..+.+
T Consensus        93 ~df----------~~~~~~~l---~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~-~~~~~~i  158 (529)
T 2h5e_A           93 EDF----------SEDTYRTL---TAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDP-MELLDEV  158 (529)
T ss_dssp             TTC----------CHHHHHGG---GGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCH-HHHHHHH
T ss_pred             hhH----------HHHHHHHH---HHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccH-HHHHHHH
Confidence            541          11122233   339999999999988888888888888878999999999999976432 3455666


Q ss_pred             HHHHH
Q 026538          229 EEVIF  233 (237)
Q Consensus       229 ~~~l~  233 (237)
                      ++.++
T Consensus       159 ~~~l~  163 (529)
T 2h5e_A          159 ENELK  163 (529)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            66554

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.63  E-value=6.5e-16  Score=121.25  Aligned_cols=114  Identities=16%  Similarity=0.119  Sum_probs=70.5

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ...++|+++|.+|||||||+|+|++...  .....++++.+   ..+...  ...+.+|||||....   .   .   .+
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~---~---~---~~   89 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQG--DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA---G---G---WL   89 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEEC--CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG---G---H---HH
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccC--CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc---h---h---hh
Confidence            4567999999999999999999986532  11222322222   122222  245789999997531   1   0   12


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      ...|+..   +|++++|+|.....+.. ...++..+..    .++|+++|+||+|+..
T Consensus        90 ~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  144 (195)
T 3cbq_A           90 RDHCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR  144 (195)
T ss_dssp             HHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred             HHHhhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence            2233332   89999999987532211 1234444433    3789999999999964

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.62  E-value=3.7e-17  Score=146.32  Aligned_cols=112  Identities=22%  Similarity=0.318  Sum_probs=85.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ..|+|+++|++|+|||||+|+|++..  ......+++|.++..+.    .+..+.+|||||+..-.          .+. 
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~--~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~----------~~~-   69 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQ--VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS----------AMR-   69 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHH--HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT----------TSB-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH----------HHH-
Confidence            45899999999999999999999873  22345567777653322    25579999999975410          111 


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                        ......+|++++|+|+..+..++..+.+..+...++|+++|+||+|+..
T Consensus        70 --~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~  118 (537)
T 3izy_P           70 --ARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAE  118 (537)
T ss_dssp             --BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTT
T ss_pred             --HHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence              1122348999999999999999999999988888999999999999864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.62  E-value=8e-16  Score=121.05  Aligned_cols=114  Identities=15%  Similarity=0.118  Sum_probs=67.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|||||||+|+|++........+..+.+........ +  ..+.+|||||...          +..+...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~   93 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER----------FRSVTRS   93 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHH----------HSCCCHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh----------HHHHHHH
Confidence            3479999999999999999999987321111122222222222222 2  5799999999421          1122233


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++..   +|++++|+|+....+... ..++..+..   .+.|+++|+||+|+..
T Consensus        94 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  144 (200)
T 2o52_A           94 YYRG---AAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP  144 (200)
T ss_dssp             HHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred             Hhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence            3433   899999999875422211 234444432   3789999999999864

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.62  E-value=4.5e-17  Score=148.00  Aligned_cols=129  Identities=16%  Similarity=0.151  Sum_probs=73.3

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeec------------------------------cCCCCceEEEEEEE---c
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT------------------------------SDKPGLTQTINFFK---L  136 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~------------------------------~~~~g~t~~~~~~~---~  136 (237)
                      ...++|+++|.+|+|||||+|+|++... ...                              ...+|+|.+.....   .
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~-~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELG-EINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHH-CC-------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcC-CcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            3557899999999999999999975421 111                              11456677654332   2


Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-----C--ChhHHHHHHHHHhcCCc-EEE
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----V--KPRDHELISLMERSQTK-YQV  208 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-----~--~~~~~~~~~~l~~~~~p-iil  208 (237)
                      +..+.||||||+.+-...             .......+|++++|+|+..+     +  ..+..+.+..+...++| +++
T Consensus       254 ~~~i~iiDTPGh~~f~~~-------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIv  320 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISG-------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV  320 (592)
T ss_dssp             -----CCEEESSSEEEEE-------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEE
T ss_pred             CeEEEEEECCChHHHHHH-------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEE
Confidence            577999999998642110             01111238999999998764     3  66777788888888887 999


Q ss_pred             EEecCCCCC--hHHHHHHHHHHHHHH
Q 026538          209 VLTKTDTVF--PIDVARRAMQIEEVI  232 (237)
Q Consensus       209 v~NK~Dl~~--~~~~~~~~~~l~~~l  232 (237)
                      |+||+|+..  ........+.+.+.+
T Consensus       321 viNKiDl~~~~~~~~~~i~~el~~~l  346 (592)
T 3mca_A          321 SVNKLDLMSWSEDRFQEIKNIVSDFL  346 (592)
T ss_dssp             EEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred             EEeccccccccHHHHHHHHHHHHHHH
Confidence            999999975  444455555665554

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.62  E-value=1.1e-15  Score=122.25  Aligned_cols=113  Identities=18%  Similarity=0.145  Sum_probs=69.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+|+|.+|||||||+++++.........+..|......... .  ...+.||||+|...          +..+...|
T Consensus        13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~----------~~~l~~~~   82 (216)
T 4dkx_A           13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER----------FRSLIPSY   82 (216)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTT----------CGGGHHHH
T ss_pred             cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchh----------hhhHHHHH
Confidence            46999999999999999999997742222222222111111111 1  34678999999653          12344455


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~  217 (237)
                      +..   ++++++|+|....-+... ..++..+.   ..++|+++|+||+|+..
T Consensus        83 ~~~---a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~  132 (216)
T 4dkx_A           83 IRD---SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD  132 (216)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred             hcc---ccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence            555   999999999875322211 23444433   24689999999999864

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.62  E-value=1.6e-16  Score=141.19  Aligned_cols=112  Identities=22%  Similarity=0.292  Sum_probs=83.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      +.|+|+++|++++|||||+++|.+..  ......+|+|.++..+.   .+..+.+|||||+.+-.             ..
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~--v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~-------------~~   67 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTK--VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFT-------------SM   67 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHH--HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCT-------------TS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCC--CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHH-------------HH
Confidence            45899999999999999999999762  22233455665543222   35679999999975411             01


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      .......+|++++|+|+.++..++..+.+..+...++|+++|+||+|+..
T Consensus        68 ~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~  117 (501)
T 1zo1_I           68 RARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE  117 (501)
T ss_dssp             BCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST
T ss_pred             HHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccc
Confidence            11223448999999999988888888888888888999999999999964

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=118.94  Aligned_cols=110  Identities=12%  Similarity=0.032  Sum_probs=68.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ...+|+++|.+|||||||+|+|++...   .....+++.+   ......  ...+.+|||||......          + 
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~-   85 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKRF---ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----------C-   85 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----------T-
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCCC---CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----------H-
Confidence            447999999999999999999998742   2222223222   111112  34688999999653211          1 


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh------cCCcEEEEEecCCCCC
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~piilv~NK~Dl~~  217 (237)
                      ..|+..   +|++++|+|.....+... ..++..+..      .+.|+++|+||+|+..
T Consensus        86 ~~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  141 (187)
T 3c5c_A           86 ERYLNW---AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ  141 (187)
T ss_dssp             HHHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred             HHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence            223333   899999999875322111 234444432      4799999999999854

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.61  E-value=4.3e-16  Score=124.65  Aligned_cols=114  Identities=18%  Similarity=0.209  Sum_probs=68.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+|+|.+|||||||+|+|++........+..+.+........ +  ..+.+|||||.....          .+...
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~   81 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR----------AITSA   81 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTT----------CCCGG
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchh----------hhHHH
Confidence            3479999999999999999999987421112222222222222222 3  478999999965311          11122


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++.   .+|++++|+|+....+... ..++..+..   .+.|+++|+||+|+..
T Consensus        82 ~~~---~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~  132 (223)
T 3cpj_B           82 YYR---GAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH  132 (223)
T ss_dssp             GTT---TCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred             Hhc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence            222   3899999999876432222 234444443   2689999999999864

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.61  E-value=1.9e-15  Score=137.06  Aligned_cols=127  Identities=18%  Similarity=0.185  Sum_probs=76.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceee-------cc------CCCCceEEE---EEEEc-----CCeEEEEeCCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------TS------DKPGLTQTI---NFFKL-----GTKLCLVDLPGYG  149 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-------~~------~~~g~t~~~---~~~~~-----~~~~~liDTpG~~  149 (237)
                      ..++|+++|++++|||||+++|+...+...       +.      ...|.|...   .+.+.     +..++||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            356999999999999999999986421110       00      123444432   22111     2578999999985


Q ss_pred             CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                      +      .    ......++..   +|++++|+|+..+.+.+....+..+...++|+++|+||+|+.... ..+..+++.
T Consensus        83 d------F----~~ev~~~l~~---aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~~~v~~ei~  148 (599)
T 3cb4_D           83 D------F----SYEVSRSLAA---CEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-PERVAEEIE  148 (599)
T ss_dssp             G------G----HHHHHHHHHH---CSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred             H------H----HHHHHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-HHHHHHHHH
Confidence            4      1    1122223332   899999999999888887777776777789999999999997532 233344444


Q ss_pred             HH
Q 026538          230 EV  231 (237)
Q Consensus       230 ~~  231 (237)
                      +.
T Consensus       149 ~~  150 (599)
T 3cb4_D          149 DI  150 (599)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.61  E-value=7.8e-16  Score=130.54  Aligned_cols=113  Identities=17%  Similarity=0.222  Sum_probs=70.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .++|+|+|.+|||||||+|+|++.. ....  .+...... .+...+..+.||||||...          +..+...++.
T Consensus       165 ~~kI~ivG~~~vGKSsLl~~l~~~~-~~~~--~pT~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~  231 (329)
T 3o47_A          165 EMRILMVGLDAAGKTTILYKLKLGE-IVTT--IPTIGFNVETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ  231 (329)
T ss_dssp             SEEEEEEESTTSSHHHHHHHTCSSC-CEEE--EEETTEEEEEEEETTEEEEEEECC---------------CCSHHHHHT
T ss_pred             cceEEEECCCCccHHHHHHHHhCCC-CCCc--ccccceEEEEEecCcEEEEEEECCCCHh----------HHHHHHHHhc
Confidence            3589999999999999999999874 2221  12111111 2223467899999999532          1122333443


Q ss_pred             ccccccEEEEEEeCCCCCCh--hHHHHHHHHHh---cCCcEEEEEecCCCCChHH
Q 026538          171 TRVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~Dl~~~~~  220 (237)
                      .   +|++++|+|+......  ....+...+..   .++|+++|+||+|+.....
T Consensus       232 ~---ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~  283 (329)
T 3o47_A          232 N---TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN  283 (329)
T ss_dssp             T---EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred             c---CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC
Confidence            3   8999999998754332  22333344333   2789999999999976443

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.61  E-value=1.7e-15  Score=140.03  Aligned_cols=130  Identities=16%  Similarity=0.197  Sum_probs=87.6

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccccee----------eccC------CCCceEEE---EEEEcCCeEEEEeCCCCCC
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV----------RTSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~----------~~~~------~~g~t~~~---~~~~~~~~~~liDTpG~~~  150 (237)
                      ...++|+++|++|+|||||+|+|+......          .+.+      .+++|...   .+...+..++||||||+.+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   87 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD   87 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence            456799999999999999999999531100          0111      22333322   2333467899999999865


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                      -  ..        ....++..   +|++++|+|+..+.+..+...+..+...++|+++|+||+|+... +..+.++.+++
T Consensus        88 f--~~--------~~~~~l~~---aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~-~~~~~~~~l~~  153 (693)
T 2xex_A           88 F--TV--------EVERSLRV---LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA-NFEYSVSTLHD  153 (693)
T ss_dssp             C--CH--------HHHHHHHH---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC-CHHHHHHHHHH
T ss_pred             h--HH--------HHHHHHHH---CCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc-chHHHHHHHHH
Confidence            1  11        11222222   99999999999888888888888888889999999999999754 34455666666


Q ss_pred             HHH
Q 026538          231 VIF  233 (237)
Q Consensus       231 ~l~  233 (237)
                      .++
T Consensus       154 ~l~  156 (693)
T 2xex_A          154 RLQ  156 (693)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.61  E-value=9.8e-16  Score=118.76  Aligned_cols=114  Identities=17%  Similarity=0.087  Sum_probs=69.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..++|+++|.+|||||||+|+|++........+..+......+...  ...+.+|||||....          ..+...+
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~   75 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVRPLS   75 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG----------TTTGGGG
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhh----------hhhHHhh
Confidence            3469999999999999999999987321111111111111111111  346899999996431          1111122


Q ss_pred             HhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                      +   ..+|++++|+|.+...+...  ..++..+..  .+.|+++|+||+|+..
T Consensus        76 ~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  125 (184)
T 1m7b_A           76 Y---PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT  125 (184)
T ss_dssp             C---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred             c---CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence            2   23899999999875422222  234444443  3689999999999964

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.60  E-value=1.2e-15  Score=138.39  Aligned_cols=111  Identities=23%  Similarity=0.359  Sum_probs=79.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCC-CceEEE--EEEEc-------------------CCeEEEEeCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTI--NFFKL-------------------GTKLCLVDLPGY  148 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~-g~t~~~--~~~~~-------------------~~~~~liDTpG~  148 (237)
                      ..|+|+++|++|+|||||+++|++..   .....+ +.|.++  .+...                   ...+.||||||+
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~---v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh   80 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSA---VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH   80 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH---HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhccc---CccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence            35799999999999999999999862   122222 333331  22211                   124999999998


Q ss_pred             CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      .+-..          +..   .....+|++++|+|+.+++..+..+.+..+...++|+++|+||+|+..
T Consensus        81 e~F~~----------~~~---r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           81 EAFTT----------LRK---RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH  136 (594)
T ss_dssp             SCCTT----------SBC---SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred             HHHHH----------HHH---HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence            54210          011   122348999999999999999888888888888999999999999964

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.60  E-value=1.2e-14  Score=134.55  Aligned_cols=130  Identities=18%  Similarity=0.227  Sum_probs=89.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccccee----------eccC------CCCceEEEE---EEEcC-------CeEEEE
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV----------RTSD------KPGLTQTIN---FFKLG-------TKLCLV  143 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~----------~~~~------~~g~t~~~~---~~~~~-------~~~~li  143 (237)
                      ...++|+++|+.|+|||||+++|+......          ...+      ..|.|....   +...+       ..++||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            356799999999999999999997531100          0111      234444332   22223       789999


Q ss_pred             eCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHH
Q 026538          144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  223 (237)
Q Consensus       144 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~  223 (237)
                      ||||+.+          +......++..   +|++++|+|++.+.......++..+...++|+++|+||+|+... +..+
T Consensus        88 DTPG~~d----------f~~~~~~~l~~---aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~-~~~~  153 (704)
T 2rdo_7           88 DTPGHVD----------FTIEVERSMRV---LDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA-NFLK  153 (704)
T ss_pred             eCCCccc----------hHHHHHHHHHH---CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc-cHHH
Confidence            9999854          11222233332   99999999999888877778888877789999999999998754 3555


Q ss_pred             HHHHHHHHHH
Q 026538          224 RAMQIEEVIF  233 (237)
Q Consensus       224 ~~~~l~~~l~  233 (237)
                      .++++++.++
T Consensus       154 ~~~~l~~~l~  163 (704)
T 2rdo_7          154 VVNQIKTRLG  163 (704)
T ss_pred             HHHHHHHHhC
Confidence            6666666554

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.59  E-value=2.1e-15  Score=119.32  Aligned_cols=112  Identities=17%  Similarity=0.143  Sum_probs=70.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ..++|+++|.+|||||||+|+|++... . ....+......  .+...  ...+.+|||||....          ..+..
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~   94 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCF-P-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVRP   94 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCC-C-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG----------TTTGG
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCC-C-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh----------hHHHH
Confidence            346999999999999999999998742 1 11122111111  11111  346899999996431          11112


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                      .++   ..+|++++|+|++...+...  ..++..+..  .+.|+++|+||+|+..
T Consensus        95 ~~~---~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  146 (205)
T 1gwn_A           95 LSY---PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT  146 (205)
T ss_dssp             GGC---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred             hhc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence            222   23899999999875422222  234444444  3689999999999964

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.59  E-value=1.1e-16  Score=137.78  Aligned_cols=137  Identities=16%  Similarity=0.201  Sum_probs=91.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc-----ceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccc-hHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVK  166 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~  166 (237)
                      .+|+++|.+|+|||||+|+|++..     ....++..+|+|++...+..+..+.++||||+.+.... +.+.   ...+.
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVG---KQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSC---HHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhh---HHHHH
Confidence            589999999999999999999862     23557889999999888877777999999999764311 1111   11222


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      .++ .....+.++|++++...........+..+...+.|+++|+||+|.+...+.....+.+++.++
T Consensus       238 ~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g  303 (368)
T 3h2y_A          238 LIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAG  303 (368)
T ss_dssp             HHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBT
T ss_pred             Hhc-cccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhC
Confidence            222 234478899999874321111222233344557899999999999987777777777776554

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.38  E-value=9.2e-17  Score=126.62  Aligned_cols=113  Identities=14%  Similarity=-0.003  Sum_probs=72.4

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-----EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-----~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ...++|+++|.+|||||||+|+|++..   ......+++.+.     ........+.+|||||...          +..+
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~   94 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRL   94 (204)
Confidence            345799999999999999999999763   122222222221     1112245577999999643          1222


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCCh
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFP  218 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~~  218 (237)
                      ...++..   +|++++|+|++...+...  ..++..+...  ++|+++|+||+|+.+.
T Consensus        95 ~~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  149 (204)
T 3th5_A           95 RPLSYPQ---TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD  149 (204)
Confidence            2333332   899999999875433222  2455555544  7899999999999754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.59  E-value=6.1e-15  Score=130.64  Aligned_cols=128  Identities=20%  Similarity=0.230  Sum_probs=74.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccccee-----------------------eccC------CCCceEEEE---EEEcCCe
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------RTSD------KPGLTQTIN---FFKLGTK  139 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~-----------------------~~~~------~~g~t~~~~---~~~~~~~  139 (237)
                      .++|+++|.+++|||||+++|+...+..                       .+.+      ..|.|.+..   +...+..
T Consensus        43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~  122 (467)
T 1r5b_A           43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR  122 (467)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred             eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence            4699999999999999999997531100                       0111      245665553   2223677


Q ss_pred             EEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-------ChhHHHHHHHHHhcCCc-EEEEEe
Q 026538          140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVLT  211 (237)
Q Consensus       140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-------~~~~~~~~~~l~~~~~p-iilv~N  211 (237)
                      +.||||||+.+             +..........+|++++|+|+..+.       ..+..+.+..+...++| +++|+|
T Consensus       123 ~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviN  189 (467)
T 1r5b_A          123 FSLLDAPGHKG-------------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN  189 (467)
T ss_dssp             EEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred             EEEEECCCcHH-------------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEE
Confidence            99999999743             1222223334499999999998764       13455666666677888 999999


Q ss_pred             cCCCCC----hHHHHHHHHHHHHHH
Q 026538          212 KTDTVF----PIDVARRAMQIEEVI  232 (237)
Q Consensus       212 K~Dl~~----~~~~~~~~~~l~~~l  232 (237)
                      |+|+..    .+......+++.+.+
T Consensus       190 K~Dl~~~~~~~~~~~~i~~e~~~~l  214 (467)
T 1r5b_A          190 KMDEPSVQWSEERYKECVDKLSMFL  214 (467)
T ss_dssp             CTTSTTCSSCHHHHHHHHHHHHHHH
T ss_pred             CccCCCccccHHHHHHHHHHHHHHH
Confidence            999964    233344444454444

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.59  E-value=2e-15  Score=136.81  Aligned_cols=126  Identities=24%  Similarity=0.269  Sum_probs=79.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceee-------ccC------CCCceEE---EEEEEc-----CCeEEEEeCCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------TSD------KPGLTQT---INFFKL-----GTKLCLVDLPGYG  149 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-------~~~------~~g~t~~---~~~~~~-----~~~~~liDTpG~~  149 (237)
                      ..++|+++|++++|||||+++|+.......       +.+      ..|.|..   ..+.+.     ...++||||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            456999999999999999999986421110       001      1233322   112111     2568899999986


Q ss_pred             CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                      +          +......++.   .+|++++|+|++.+.+.+....+..+...++|+++|+||+|+.... ..+..+++.
T Consensus        85 d----------F~~ev~r~l~---~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~  150 (600)
T 2ywe_A           85 D----------FSYEVSRALA---ACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIE  150 (600)
T ss_dssp             G----------GHHHHHHHHH---TCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred             h----------HHHHHHHHHH---hCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHH
Confidence            4          1112223333   2899999999999988888777777777899999999999997533 233344444


Q ss_pred             H
Q 026538          230 E  230 (237)
Q Consensus       230 ~  230 (237)
                      +
T Consensus       151 ~  151 (600)
T 2ywe_A          151 E  151 (600)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.59  E-value=5.2e-15  Score=136.71  Aligned_cols=128  Identities=20%  Similarity=0.233  Sum_probs=85.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccccee----e------ccC------CCCceEEE---EEEEcCCeEEEEeCCCCCCc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV----R------TSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFA  151 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~----~------~~~------~~g~t~~~---~~~~~~~~~~liDTpG~~~~  151 (237)
                      ..++|+++|++|+|||||+|+|+......    .      +.+      ..+.|...   .+...+..++||||||+.+-
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df   90 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF   90 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence            45799999999999999999998431100    0      111      22333322   23334678999999998541


Q ss_pred             ccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538          152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV  231 (237)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~  231 (237)
                            .    .....++..   +|++++|+|+..+........+..+...++|+++|+||+|+.... ..+..+.+++.
T Consensus        91 ------~----~~~~~~l~~---aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~-~~~~~~~l~~~  156 (691)
T 1dar_A           91 ------T----IEVERSMRV---LDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD-LWLVIRTMQER  156 (691)
T ss_dssp             ------H----HHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC-HHHHHHHHHHT
T ss_pred             ------H----HHHHHHHHH---CCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCC-HHHHHHHHHHH
Confidence                  1    112222322   999999999999888888888888888899999999999997543 44555555554


Q ss_pred             H
Q 026538          232 I  232 (237)
Q Consensus       232 l  232 (237)
                      +
T Consensus       157 l  157 (691)
T 1dar_A          157 L  157 (691)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.58  E-value=5.9e-15  Score=132.91  Aligned_cols=127  Identities=20%  Similarity=0.255  Sum_probs=90.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccccee--------------eccC------CCCce---EEEEEEEcCCeEEEEeCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTSD------KPGLT---QTINFFKLGTKLCLVDLPGYG  149 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~--------------~~~~------~~g~t---~~~~~~~~~~~~~liDTpG~~  149 (237)
                      .+|+|+|+.++|||||..+|+-..+..              .+.+      .+|.|   ..+.+.+.+..++||||||+.
T Consensus        32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv  111 (548)
T 3vqt_A           32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ  111 (548)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence            599999999999999999987321100              1111      12222   223455668899999999986


Q ss_pred             CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                      +  -..+           ..+.+..+|++++|+|+..++..+...+++.+...++|+++++||+|.... +..+.+++++
T Consensus       112 D--F~~E-----------v~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a-d~~~~~~~i~  177 (548)
T 3vqt_A          112 D--FSED-----------TYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL-HPLDVMADIE  177 (548)
T ss_dssp             G--CSHH-----------HHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC-CHHHHHHHHH
T ss_pred             H--HHHH-----------HHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc-chhHhhhhhh
Confidence            5  1111           122222399999999999999999999999999999999999999998643 3566777777


Q ss_pred             HHHH
Q 026538          230 EVIF  233 (237)
Q Consensus       230 ~~l~  233 (237)
                      +.++
T Consensus       178 ~~l~  181 (548)
T 3vqt_A          178 QHLQ  181 (548)
T ss_dssp             HHHT
T ss_pred             hhcC
Confidence            7765

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.58  E-value=1.5e-16  Score=125.08  Aligned_cols=114  Identities=18%  Similarity=0.168  Sum_probs=68.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-cC--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|||||||+|+|++........+..+.+....... .+  ..+.+|||||......          +...
T Consensus        32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~  101 (199)
T 3l0i_B           32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT----------ITSS  101 (199)
T ss_dssp             EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC----------CSCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH----------HHHH
Confidence            357999999999999999999998732111111112222222222 22  4689999999653211          1112


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---CCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~piilv~NK~Dl~~  217 (237)
                      ++.   .+|++++|+|+++..+... ..++..+...   +.|+++|+||+|+.+
T Consensus       102 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~  152 (199)
T 3l0i_B          102 YYR---GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT  152 (199)
T ss_dssp             --C---CCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred             Hhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence            222   3899999999876432222 3344445433   689999999999864

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.58  E-value=2.2e-14  Score=136.63  Aligned_cols=129  Identities=20%  Similarity=0.245  Sum_probs=85.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc---c------ee-----eccCCCCceEEE---EEEEcCCeEEEEeCCCCCCccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW---G------VV-----RTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYA  153 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~---~------~~-----~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~  153 (237)
                      ..++|+++|.+++|||||+++|++..   .      ..     ......|.|.+.   .+...+..+.||||||+.+   
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed---  371 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD---  371 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH---
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH---
Confidence            45799999999999999999998741   0      00     011234555443   2333467899999999632   


Q ss_pred             chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHH-HHHHHHHHHHH
Q 026538          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEEV  231 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~-~~~~~~~l~~~  231 (237)
                                +..........+|++++|+|+..+...+..+++..+...++| +++|+||+|+.+..+ .....+++.+.
T Consensus       372 ----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~el  441 (1289)
T 3avx_A          372 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVREL  441 (1289)
T ss_dssp             ----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHH
Confidence                      233333444559999999999988888888888877777899 799999999986433 23333444443


Q ss_pred             H
Q 026538          232 I  232 (237)
Q Consensus       232 l  232 (237)
                      +
T Consensus       442 L  442 (1289)
T 3avx_A          442 L  442 (1289)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.56  E-value=1.7e-14  Score=121.25  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=72.1

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      +|+++|.+|||||||++.+.+.. ........+.|..+.+  ......+.||||||...-...     .|  ....|++.
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~-~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~-----~l--~~~~yyr~   72 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNM-QPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEP-----SY--DSERLFKS   72 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCC-CSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCC-----SH--HHHHHHTT
T ss_pred             CEEEECCCCCCHHHHHHHHHcCC-CCCccceecCeeeeeeEEEccEEEEEEEECCCchhccch-----hh--hhhhhccC
Confidence            58999999999999999887652 1111111222222211  123478999999997542100     01  13455554


Q ss_pred             cccccEEEEEEeCCCCCChhHHHH---HHHHHh--cCCcEEEEEecCCCCChHHH
Q 026538          172 RVSLKRVCLLIDTKWGVKPRDHEL---ISLMER--SQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~~~~---~~~l~~--~~~piilv~NK~Dl~~~~~~  221 (237)
                         ++++++|+|+...+......+   +..+..  .++|+++|+||+|+..+.+.
T Consensus        73 ---a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R  124 (331)
T 3r7w_B           73 ---VGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFK  124 (331)
T ss_dssp             ---CSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHH
T ss_pred             ---CCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhh
Confidence               999999999886633332333   222222  36899999999999876543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.56  E-value=9.8e-17  Score=138.08  Aligned_cols=137  Identities=16%  Similarity=0.152  Sum_probs=93.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc----cceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccc-hHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~----~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~  167 (237)
                      .+|+++|.+|+|||||+|+|++.    .....++..+|+|++......+..+.++||||+...... ..+.   ......
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l~~  239 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVD---ARDLKI  239 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSC---TTTHHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHh---HHHHHH
Confidence            48999999999999999999986    123567889999999888877777999999998764211 1111   111222


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      ++ .....+.++|++++...+.......+..+...+.|+++++||+|.+...+.....+.+++.++
T Consensus       240 ~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g  304 (369)
T 3ec1_A          240 IT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLG  304 (369)
T ss_dssp             HS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBT
T ss_pred             Hh-cccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcC
Confidence            22 224489999999984321111122233344557899999999999876666666666666554

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.56  E-value=1.1e-14  Score=137.16  Aligned_cols=111  Identities=20%  Similarity=0.280  Sum_probs=77.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccC---------------CCCceEE---EEEEEc----------------C
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQT---INFFKL----------------G  137 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~---------------~~g~t~~---~~~~~~----------------~  137 (237)
                      .++|+|+|++|+|||||+++|+.... .....               .+|.|..   ..+...                +
T Consensus        19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g-~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           19 VRNMSVIAHVDHGKSTLTDSLVQRAG-IISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHB-CCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcC-CcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            46999999999999999999987521 11111               1222221   111111                4


Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      ..++||||||+.+-          ......++..   +|++++|+|+..+.+.+....+..+...++|+++|+||+|+.
T Consensus        98 ~~i~liDTPG~~df----------~~~~~~~l~~---aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           98 FLINLIDSPGHVDF----------SSEVTAALRV---TDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEECCCCCCSS----------CHHHHHHHHT---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             ceEEEEECcCchhh----------HHHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence            67899999998651          1122233333   999999999999888888777777777789999999999986

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.54  E-value=1.1e-13  Score=120.34  Aligned_cols=141  Identities=18%  Similarity=0.287  Sum_probs=89.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccccee---eccCCCCceEEE-EEEEc--C--CeEEEEeCCCCCCcccch----H--
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTI-NFFKL--G--TKLCLVDLPGYGFAYAKE----E--  156 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~---~~~~~~g~t~~~-~~~~~--~--~~~~liDTpG~~~~~~~~----~--  156 (237)
                      ..++++|+|++|+|||||+|.|+|.. +.   .....++.+... .+...  +  ..++++|++|++......    .  
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~-l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~  119 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTK-FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV  119 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSC-C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCcc-ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence            34569999999999999999999973 11   111224444432 22211  1  268999999997642211    1  


Q ss_pred             --HHHHHHHHHHHHHhcc------ccc--c-EEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHH
Q 026538          157 --VKDAWEELVKEYVSTR------VSL--K-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA  225 (237)
Q Consensus       157 --~~~~~~~~~~~~~~~~------~~~--d-~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~  225 (237)
                        +...+..++..+....      ..+  | +++|++|+.+++...+.++++.+. .++|+|+|+||+|.+++.++....
T Consensus       120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~  198 (427)
T 2qag_B          120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFK  198 (427)
T ss_dssp             HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHH
Confidence              2233333343332111      122  3 466778888899999999998887 689999999999999999888888


Q ss_pred             HHHHHHHH
Q 026538          226 MQIEEVIF  233 (237)
Q Consensus       226 ~~l~~~l~  233 (237)
                      +.+.+.+.
T Consensus       199 ~~I~~~L~  206 (427)
T 2qag_B          199 IKITSELV  206 (427)
T ss_dssp             HHHHHHHB
T ss_pred             HHHHHHHH
Confidence            88777554

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.54  E-value=6.5e-15  Score=124.18  Aligned_cols=112  Identities=16%  Similarity=0.032  Sum_probs=72.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|+|||||+|++++..   ......+++.+..   +...+  ..+.+|||||....          ....
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~  220 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRLR  220 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSC---CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG----------TTTG
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCC---CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhh----------hHHH
Confidence            34799999999999999999999873   2333344443322   22223  34569999997431          1111


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhHH--HHHHHHHhc--CCcEEEEEecCCCCCh
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFP  218 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~Dl~~~  218 (237)
                      ..++   ..+|++++|+|++...+....  .++..+...  ++|+++|+||+|+.+.
T Consensus       221 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  274 (332)
T 2wkq_A          221 PLSY---PQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD  274 (332)
T ss_dssp             GGGC---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred             HHhc---cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence            2222   238999999998764332222  344555443  7899999999998654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.53  E-value=6.7e-14  Score=121.91  Aligned_cols=141  Identities=22%  Similarity=0.267  Sum_probs=80.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccC-----CCCceE-EE-EE----EEcCCeEEEEeCCCCCCcccc----hH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-----KPGLTQ-TI-NF----FKLGTKLCLVDLPGYGFAYAK----EE  156 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-----~~g~t~-~~-~~----~~~~~~~~liDTpG~~~~~~~----~~  156 (237)
                      .++|+|+|++|||||||+|.|++.........     ...++. .. .+    ......+.+|||||++.....    ..
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            46889999999999999999998742111110     011111 11 11    111236899999998753211    11


Q ss_pred             HHHHHHHHHHHHHhc----------cccccEEEEEEeCC-CCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHH
Q 026538          157 VKDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA  225 (237)
Q Consensus       157 ~~~~~~~~~~~~~~~----------~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~  225 (237)
                      +..........|+..          ...+++++|++++. +++...+..+++.+.. ++|+|+|+||+|+.++.++....
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~k  189 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK  189 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHHH
Confidence            111111222233211          12245567776665 6888888888888865 79999999999999888777666


Q ss_pred             HHHHHHHH
Q 026538          226 MQIEEVIF  233 (237)
Q Consensus       226 ~~l~~~l~  233 (237)
                      +.+.+.+.
T Consensus       190 ~~i~~~~~  197 (418)
T 2qag_C          190 KQIMKEIQ  197 (418)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665544

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.53  E-value=1.4e-14  Score=115.36  Aligned_cols=114  Identities=18%  Similarity=0.108  Sum_probs=67.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCc--e-EEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--T-QTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~--t-~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~  165 (237)
                      ..++|+++|.+|||||||+|++++... ......+.+  + ....+...+  ..+.+|||+|...      .   ...+.
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~-~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~------~---~~~l~  105 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHD-SMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG------E---NEWLH  105 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCC-TTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH------H---HHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc------h---hhhHH
Confidence            347999999999999999999997532 222222222  1 111222223  3467899999532      0   11222


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      ..|+.   .++++++|+|....-+... ..+...+..    .++|+++|+||+|+..
T Consensus       106 ~~~~~---~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~  159 (211)
T 2g3y_A          106 DHCMQ---VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR  159 (211)
T ss_dssp             HCCCC---CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred             HHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence            22222   3799999999875321111 234443432    3689999999999864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.52  E-value=7.9e-14  Score=114.96  Aligned_cols=141  Identities=21%  Similarity=0.335  Sum_probs=88.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeec----c--CCCCce--EEEEEE----EcCCeEEEEeCCCCCCcccc----hH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT----S--DKPGLT--QTINFF----KLGTKLCLVDLPGYGFAYAK----EE  156 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~----~--~~~g~t--~~~~~~----~~~~~~~liDTpG~~~~~~~----~~  156 (237)
                      ++++++|++|+|||||+|.|+|.......    .  +.+.++  +.+.+.    .....++++|+||++.....    ..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            58999999999999999999986311100    0  111111  112111    12346899999998764221    11


Q ss_pred             HHHH----HHHHHHHHHhcc-------ccccEEEEEEeC-CCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHH
Q 026538          157 VKDA----WEELVKEYVSTR-------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR  224 (237)
Q Consensus       157 ~~~~----~~~~~~~~~~~~-------~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~  224 (237)
                      +...    +.......++..       ..+.++++++|. .+++.+.+.++++.+... +++++|+||+|.++..+....
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~~  161 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSEF  161 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHHH
Confidence            2211    111111221111       125778888884 478999999999999887 999999999999999988888


Q ss_pred             HHHHHHHHHh
Q 026538          225 AMQIEEVIFY  234 (237)
Q Consensus       225 ~~~l~~~l~~  234 (237)
                      .+.+++.+..
T Consensus       162 k~~i~~~l~~  171 (270)
T 3sop_A          162 KQRVRKELEV  171 (270)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888776653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.52  E-value=1e-13  Score=127.67  Aligned_cols=128  Identities=22%  Similarity=0.267  Sum_probs=89.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccccee----e------ccC------CCCce---EEEEEEEcCCeEEEEeCCCCCCc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV----R------TSD------KPGLT---QTINFFKLGTKLCLVDLPGYGFA  151 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~----~------~~~------~~g~t---~~~~~~~~~~~~~liDTpG~~~~  151 (237)
                      ...+|+++|++|+|||||+++|++.....    .      ..+      ..+.|   ....+...+..+++|||||+.+ 
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~-   86 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD-   86 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG-
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc-
Confidence            45699999999999999999999542110    0      000      01222   3334455577899999999753 


Q ss_pred             ccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538          152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV  231 (237)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~  231 (237)
                           .    ......++..   +|++++|+|+..++......+++.+...++|+++|+||+|+.  ....+..+.+.+.
T Consensus        87 -----f----~~~~~~~l~~---ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~--~~~~~~~~~l~~~  152 (665)
T 2dy1_A           87 -----F----VGEIRGALEA---ADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG--GDYYALLEDLRST  152 (665)
T ss_dssp             -----G----HHHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC--CCHHHHHHHHHHH
T ss_pred             -----h----HHHHHHHHhh---cCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh--hhHHHHHHHHHHH
Confidence                 1    1122223332   899999999998988888888888888899999999999987  3455566666665


Q ss_pred             HH
Q 026538          232 IF  233 (237)
Q Consensus       232 l~  233 (237)
                      ++
T Consensus       153 l~  154 (665)
T 2dy1_A          153 LG  154 (665)
T ss_dssp             HC
T ss_pred             hC
Confidence            54

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.51  E-value=3.6e-14  Score=131.60  Aligned_cols=130  Identities=20%  Similarity=0.219  Sum_probs=88.5

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccccee----e------ccC------CCCceEE---EEEEEc-------CCeEEEE
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV----R------TSD------KPGLTQT---INFFKL-------GTKLCLV  143 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~----~------~~~------~~g~t~~---~~~~~~-------~~~~~li  143 (237)
                      ++..+|+|+|+.++|||||..+|+-..+..    .      +.+      .+|.|..   +.+.+.       +..++||
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            355799999999999999999987432110    0      111      1223321   223322       3579999


Q ss_pred             eCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHH
Q 026538          144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  223 (237)
Q Consensus       144 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~  223 (237)
                      ||||+.+  -..++.        ..+   ..+|++++|+|+..+++.+...+++++...++|.++++||+|.... +...
T Consensus        91 DTPGHvD--F~~Ev~--------~aL---r~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a-~~~~  156 (709)
T 4fn5_A           91 DTPGHVD--FTIEVE--------RSL---RVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA-NFLR  156 (709)
T ss_dssp             CCCSCTT--CHHHHH--------HHH---HHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC-CHHH
T ss_pred             eCCCCcc--cHHHHH--------HHH---HHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc-cHHH
Confidence            9999865  112121        112   2299999999999999999999999999999999999999998643 3555


Q ss_pred             HHHHHHHHHH
Q 026538          224 RAMQIEEVIF  233 (237)
Q Consensus       224 ~~~~l~~~l~  233 (237)
                      ..+++++.++
T Consensus       157 ~~~ei~~~l~  166 (709)
T 4fn5_A          157 VVEQIKKRLG  166 (709)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHhhhhcc
Confidence            6667766654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.50  E-value=5.8e-15  Score=135.35  Aligned_cols=127  Identities=22%  Similarity=0.283  Sum_probs=89.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccccee----------eccCC------CCceEE---EEEEEcCCeEEEEeCCCCCCcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV----------RTSDK------PGLTQT---INFFKLGTKLCLVDLPGYGFAY  152 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~----------~~~~~------~g~t~~---~~~~~~~~~~~liDTpG~~~~~  152 (237)
                      ..+|+|+|+.++|||||..+|+-..+..          .+.+.      +|.|..   +.+.+.+..++|+||||+.+  
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D--   79 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD--   79 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS--
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH--
Confidence            4589999999999999999987432110          01111      122221   23444578899999999875  


Q ss_pred             cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                                 +.....+.+..+|++++|+|+..+++.+...+++.+...++|.++++||+|.... +.....+++++.+
T Consensus        80 -----------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a-~~~~~~~~i~~~l  147 (638)
T 3j25_A           80 -----------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI-DLSTVYQDIKEKL  147 (638)
T ss_dssp             -----------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC-CSHHHHHHHHHTT
T ss_pred             -----------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC-CHHHHHHHHHHHh
Confidence                       2222223333499999999999999999999999999999999999999998643 2334455555443

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.49  E-value=8.4e-14  Score=125.35  Aligned_cols=114  Identities=18%  Similarity=0.172  Sum_probs=71.3

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---------E--EcCCeEEEEeCCCCCCcccchHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---------F--KLGTKLCLVDLPGYGFAYAKEEVK  158 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---------~--~~~~~~~liDTpG~~~~~~~~~~~  158 (237)
                      ....+|+++|.+|||||||+|+|++........+..|.+.....         .  ..+..+.+|||||......     
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~-----  113 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA-----  113 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT-----
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH-----
Confidence            45579999999999999999999987321111122222111110         0  0146799999999543211     


Q ss_pred             HHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc--CCcEEEEEecCCCCCh
Q 026538          159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFP  218 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~  218 (237)
                           +...++..   +|++++|+|++..  .....++..+...  +.|+++|+||+|+...
T Consensus       114 -----~~~~~l~~---~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~  165 (535)
T 3dpu_A          114 -----SHQFFMTR---SSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPS  165 (535)
T ss_dssp             -----TCHHHHHS---SEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTT
T ss_pred             -----HHHHHccC---CcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccc
Confidence                 11222332   8999999998753  4445677777664  4899999999999753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.49  E-value=2.7e-14  Score=121.95  Aligned_cols=121  Identities=20%  Similarity=0.223  Sum_probs=67.8

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccc-----ceeeccCCC-------------------------------------Cc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKP-------------------------------------GL  127 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~~~-------------------------------------g~  127 (237)
                      ...+.|+|+|++|||||||+|+|++..     .+......+                                     |+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~  151 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV  151 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence            457899999999999999999999631     112222111                                     11


Q ss_pred             eEEEE-----EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc
Q 026538          128 TQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS  202 (237)
Q Consensus       128 t~~~~-----~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~  202 (237)
                      |++..     +...+..+.++||||+..+   .      ..+       ...+|++++|+|++.+...   ..+.. .-.
T Consensus       152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~------~~l-------~~~~d~vl~V~d~~~~~~~---~~i~~-~il  211 (349)
T 2www_A          152 TRTTNEAILLCEGAGYDIILIETVGVGQS---E------FAV-------ADMVDMFVLLLPPAGGDEL---QGIKR-GII  211 (349)
T ss_dssp             CTTHHHHHHHHHHTTCSEEEEECCCC--C---H------HHH-------HTTCSEEEEEECCC----------------C
T ss_pred             hHHHHHHHHhhccCCCCEEEEECCCcchh---h------hhH-------HhhCCEEEEEEcCCcchhH---HHhHH-HHH
Confidence            11100     0013567999999998632   1      111       1238999999998754221   11111 113


Q ss_pred             CCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          203 QTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       203 ~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                      ..|.++|+||+|+.+..........+..
T Consensus       212 ~~~~ivVlNK~Dl~~~~~~~~~~~~l~~  239 (349)
T 2www_A          212 EMADLVAVTKSDGDLIVPARRIQAEYVS  239 (349)
T ss_dssp             CSCSEEEECCCSGGGHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeeecCCCchhHHHHHHHHHH
Confidence            5688999999999765443333444433

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.47  E-value=3.4e-14  Score=111.10  Aligned_cols=113  Identities=19%  Similarity=0.127  Sum_probs=64.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce---EEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t---~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .++|+++|.+|||||||+|++++... ...+..++++   ....+...+  ..+.+|||+|.....  .       .+..
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~--~-------~~~~   75 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHD-SMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN--E-------WLHD   75 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSC-CC----GGGCTTEEEEEEEETTEEEEEEEECCCCC------C-------TTGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcC-CcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh--h-------hHHH
Confidence            46999999999999999999997522 2222222221   112222223  346789999964310  0       1112


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      .|+..   +|++++|+|....-+... ..+...+..    .+.|+++|+||+|+..
T Consensus        76 ~~~~~---~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~  128 (192)
T 2cjw_A           76 HCMQV---GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR  128 (192)
T ss_dssp             GHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred             hhccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence            22222   799999999875322111 233333332    3689999999999863

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.46  E-value=2e-13  Score=107.09  Aligned_cols=113  Identities=19%  Similarity=0.182  Sum_probs=68.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|++|||||||+|+|++........+..+...... +...+  ..+.+|||||.....          .+...+
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~~~~   74 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYR----------RITSAY   74 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTT----------CCCHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhh----------hhhHHH
Confidence            36899999999999999999999742111222222222221 22223  357789999964311          111222


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      +..   ++++++|+|.....+... ..++..+..   .+.|+++|+||+|+..
T Consensus        75 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~  124 (199)
T 2f9l_A           75 YRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH  124 (199)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             Hhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence            332   899999999875322222 234444432   3689999999999863

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.41  E-value=4.8e-13  Score=114.21  Aligned_cols=86  Identities=23%  Similarity=0.266  Sum_probs=54.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--EEc------------------CCeEEEEeCCCCCCcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL------------------GTKLCLVDLPGYGFAY  152 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~~~------------------~~~~~liDTpG~~~~~  152 (237)
                      .+|+++|.+|||||||+|+|++..  ..+++.|++|.+...  ...                  +..+.+|||||+....
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            589999999999999999999984  566777777765421  111                  2569999999986531


Q ss_pred             cchHHHHHHHHHHHHHHhccccccEEEEEEeCCC
Q 026538          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  186 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~  186 (237)
                      ...      ..+...++.....+|++++|+|++.
T Consensus        81 ~~~------~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKG------EGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHH------GGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccc------chHHHHHHHHHHhcCeEEEEEecCC
Confidence            110      1111222222334999999999875

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.40  E-value=3e-12  Score=107.11  Aligned_cols=139  Identities=22%  Similarity=0.262  Sum_probs=71.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCC------CceEEE---EE----EEcCCeEEEEeCCCCCCccc----
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQTI---NF----FKLGTKLCLVDLPGYGFAYA----  153 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~------g~t~~~---~~----~~~~~~~~liDTpG~~~~~~----  153 (237)
                      -.++|+++|++|+|||||+|+|++.. ....+..+      ..|...   .+    ......+.+|||||++....    
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~-~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTD-LYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCC-ccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            34689999999999999999998762 12211110      011111   11    11234689999999853211    


Q ss_pred             chHHHHHHHHHHHHHHhccc----------cccEEEEEEeCC-CCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHH
Q 026538          154 KEEVKDAWEELVKEYVSTRV----------SLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA  222 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~----------~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~  222 (237)
                      ...+..........|+....          .+++++|+++.. .++...+.++++.+.. ..|+++|+||+|+.+..++.
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~-~~~iilV~~K~Dl~~~~e~~  174 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN-KVNIVPVIAKADTLTLKERE  174 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT-TSCEEEEECCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh-cCCEEEEEEeCCCCCHHHHH
Confidence            11111111122223333221          134466666654 4587777666666643 57999999999998876654


Q ss_pred             HHHHHHHHH
Q 026538          223 RRAMQIEEV  231 (237)
Q Consensus       223 ~~~~~l~~~  231 (237)
                      ...+.+.+.
T Consensus       175 ~~~~~~~~~  183 (301)
T 2qnr_A          175 RLKKRILDE  183 (301)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.40  E-value=8e-13  Score=113.11  Aligned_cols=122  Identities=20%  Similarity=0.222  Sum_probs=72.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc-----ceeeccCCCCceE-------------------EEEE-------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQ-------------------TINF-------------  133 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~~~g~t~-------------------~~~~-------------  133 (237)
                      ..++|+++|.+|+|||||+++|....     .+..+...++.+.                   ...+             
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~  157 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT  157 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence            45799999999999999999987431     2222221111111                   0000             


Q ss_pred             ----------EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcC
Q 026538          134 ----------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ  203 (237)
Q Consensus       134 ----------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~  203 (237)
                                ...+..+.||||||+...   .      ..+.       ..+|++++|+|+..+.....  +...+  ..
T Consensus       158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~------~~~~-------~~aD~vl~V~d~~~~~~~~~--l~~~~--~~  217 (355)
T 3p32_A          158 RATRETVVLLEAAGFDVILIETVGVGQS---E------VAVA-------NMVDTFVLLTLARTGDQLQG--IKKGV--LE  217 (355)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECSCSSH---H------HHHH-------TTCSEEEEEEESSTTCTTTT--CCTTS--GG
T ss_pred             HHHHHHHHHHhhCCCCEEEEeCCCCCcH---H------HHHH-------HhCCEEEEEECCCCCccHHH--HHHhH--hh
Confidence                      012578999999998641   0      1111       33999999999764322111  00111  23


Q ss_pred             CcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          204 TKYQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       204 ~piilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                      .|+++|+||+|+.+........+.+.+.+
T Consensus       218 ~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l  246 (355)
T 3p32_A          218 LADIVVVNKADGEHHKEARLAARELSAAI  246 (355)
T ss_dssp             GCSEEEEECCCGGGHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCcChhHHHHHHHHHHHHH
Confidence            69999999999987666655666666554

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.39  E-value=8.2e-13  Score=103.06  Aligned_cols=114  Identities=19%  Similarity=0.179  Sum_probs=68.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEcCC--eEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGT--KLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|++|||||||+++|++........+..+...... +...+.  .+.+|||||.....          .+...
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~~~   97 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR----------AITSA   97 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS----------CCCHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh----------hhhHH
Confidence            347999999999999999999998742111222222222221 222233  45679999975421          11222


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ++..   ++.+++|+|.....+... ..++..+..   .+.|+++|+||+|+..
T Consensus        98 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~  148 (191)
T 1oix_A           98 YYRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH  148 (191)
T ss_dssp             HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             Hhhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence            3322   788999999764322111 234443332   3689999999999853

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.36  E-value=1.9e-12  Score=112.67  Aligned_cols=117  Identities=21%  Similarity=0.272  Sum_probs=73.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEEc--CCeEEEEeCCCCCCcccc-hHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL--GTKLCLVDLPGYGFAYAK-EEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~~--~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~  166 (237)
                      ...|+|+|++|||||||+|+|++..  ..+.+.+.+|....  ....  ...+.++||||+.+.... ..+       ..
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L-------~~  227 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGL-------GL  227 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCS-------CH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhh-------hH
Confidence            3578999999999999999999884  34556666654432  2222  267999999998642111 001       11


Q ss_pred             HHHhccccccEEEEEEeCC-CCCChhHHHHHHHHHh-----cCCcEEEEEecCCCCCh
Q 026538          167 EYVSTRVSLKRVCLLIDTK-WGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~  218 (237)
                      .++.....++.+++++|.+ ..+.. ...+.+.+..     ...|.++|+||+|+...
T Consensus       228 ~fl~~~era~~lL~vvDls~~~~~~-ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~  284 (416)
T 1udx_A          228 EFLRHIARTRVLLYVLDAADEPLKT-LETLRKEVGAYDPALLRRPSLVALNKVDLLEE  284 (416)
T ss_dssp             HHHHHHTSSSEEEEEEETTSCHHHH-HHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred             HHHHHHHHHHhhhEEeCCccCCHHH-HHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence            1222234489999999986 11111 1112222221     25899999999999865

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.36  E-value=1.2e-12  Score=111.35  Aligned_cols=123  Identities=19%  Similarity=0.140  Sum_probs=71.2

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccc-----ceeeccCCCCceEE--------------------EE-E----------
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQT--------------------IN-F----------  133 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~~~g~t~~--------------------~~-~----------  133 (237)
                      .....|+++|++|+|||||+|.|++..     .+..++..++++..                    +. .          
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~  133 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  133 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence            355789999999999999999997421     22333222222210                    00 0          


Q ss_pred             -----------EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc
Q 026538          134 -----------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS  202 (237)
Q Consensus       134 -----------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~  202 (237)
                                 ...+..+.||||||+.+..  .       ..    .   ..+|++++|+|+..+.....   +.. ...
T Consensus       134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~--~-------~~----~---~~aD~vl~Vvd~~~~~~~~~---l~~-~~~  193 (341)
T 2p67_A          134 SQRARELMLLCEAAGYDVVIVETVGVGQSE--T-------EV----A---RMVDCFISLQIAGGGDDLQG---IKK-GLM  193 (341)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTHH--H-------HH----H---TTCSEEEEEECC------CC---CCH-HHH
T ss_pred             HHHHHHHHHHhhccCCCEEEEeCCCccchH--H-------HH----H---HhCCEEEEEEeCCccHHHHH---HHH-hhh
Confidence                       0126789999999986420  0       01    1   34999999999864321110   000 112


Q ss_pred             CCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          203 QTKYQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       203 ~~piilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                      +.|.++|+||+|+....+.....+.+++.+
T Consensus       194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l  223 (341)
T 2p67_A          194 EVADLIVINKDDGDNHTNVAIARHMYESAL  223 (341)
T ss_dssp             HHCSEEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             cccCEEEEECCCCCChHHHHHHHHHHHHHH
Confidence            468899999999987655555555555433

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.35  E-value=4.5e-12  Score=103.53  Aligned_cols=48  Identities=25%  Similarity=0.225  Sum_probs=32.1

Q ss_pred             cccEEEEEEeCCCC--CChhH-HHHHHHHH----hcCCcEEEEEecCCCCChHHH
Q 026538          174 SLKRVCLLIDTKWG--VKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       174 ~~d~v~~vvd~~~~--~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~~~~  221 (237)
                      .+|++++|+|+++.  .+... ..++..+.    ..++|+++|+||+|+.....+
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v  216 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI  216 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH
Confidence            38999999998764  33322 23343332    247999999999999765544

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.33  E-value=1.3e-12  Score=112.07  Aligned_cols=85  Identities=24%  Similarity=0.287  Sum_probs=55.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EE----------------------EcCCeEEEEeCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FF----------------------KLGTKLCLVDLPGY  148 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~----------------------~~~~~~~liDTpG~  148 (237)
                      ++|+++|.||||||||+|+|++..  ..+.+.+++|.+.+  ..                      ..+..+.+|||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~--~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN--ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH--TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            579999999999999999999873  34556666554321  11                      12457999999998


Q ss_pred             CCcccc-hHHHHHHHHHHHHHHhccccccEEEEEEeCCC
Q 026538          149 GFAYAK-EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  186 (237)
Q Consensus       149 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~  186 (237)
                      ...... ..+..       .++.....+|++++|+|++.
T Consensus        80 ~~~a~~~~~lg~-------~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGN-------QFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTH-------HHHHHHHTCSEEEEEEECCC
T ss_pred             cccccccchHHH-------HHHHHHHhCCEEEEEEECCC
Confidence            653221 11211       12222233999999999874

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.28  E-value=5.2e-12  Score=103.06  Aligned_cols=122  Identities=17%  Similarity=0.183  Sum_probs=70.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHh-----cccceeeccCCCCc----------------eEEEE-----------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGL----------------TQTIN-----------------  132 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~-----~~~~~~~~~~~~g~----------------t~~~~-----------------  132 (237)
                      ..+.+++.|.+|||||||++.|.     +. .+..+..-++.                +.+..                 
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~-~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNY-KVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL   91 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHTTTS-CEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence            34677889999999999999998     55 44444322221                00000                 


Q ss_pred             ------------EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHH-H----
Q 026538          133 ------------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-L----  195 (237)
Q Consensus       133 ------------~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~-~----  195 (237)
                                  ....+..+.||||||..+..   .    +..+.......... +++++++|+.......+.. .    
T Consensus        92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~---~----~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~  163 (262)
T 1yrb_A           92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETF---L----FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA  163 (262)
T ss_dssp             HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH---H----HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhcCCEEEEeCCCccchh---h----hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence                        00013479999999974310   0    00111111122244 8899999986554444322 1    


Q ss_pred             HHHHHhcCCcEEEEEecCCCCChHHH
Q 026538          196 ISLMERSQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       196 ~~~l~~~~~piilv~NK~Dl~~~~~~  221 (237)
                      .......+.|+++|+||+|+.+..+.
T Consensus       164 ~~~~~~~~~p~~iv~NK~D~~~~~~~  189 (262)
T 1yrb_A          164 LLIDLRLGATTIPALNKVDLLSEEEK  189 (262)
T ss_dssp             HHHHHHHTSCEEEEECCGGGCCHHHH
T ss_pred             HHHhcccCCCeEEEEecccccccccH
Confidence            12223347899999999999876543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.24  E-value=5.7e-12  Score=104.45  Aligned_cols=61  Identities=33%  Similarity=0.610  Sum_probs=42.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY  152 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~  152 (237)
                      ..++|+++|.||+|||||+|+|++. ....+++.+|+|++......+..+.++||||+..+.
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~  179 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPK  179 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCC
Confidence            4579999999999999999999998 556788999999988777678889999999997653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.17  E-value=2.6e-10  Score=101.34  Aligned_cols=117  Identities=16%  Similarity=0.227  Sum_probs=68.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHh------cccceeeccC-C--CCc--------eE-EEEEEE-----------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSD-K--PGL--------TQ-TINFFK-----------------  135 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~------~~~~~~~~~~-~--~g~--------t~-~~~~~~-----------------  135 (237)
                      ...+|+++|.+||||||+++.|+      |. .+..++. .  ++.        ++ .+.++.                 
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            34588999999999999999999      54 3333322 1  110        00 011111                 


Q ss_pred             ---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcE-EEEEe
Q 026538          136 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT  211 (237)
Q Consensus       136 ---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pi-ilv~N  211 (237)
                         .+..+.||||||....  ...+......+.. +.    .+|.+++|+|+..+..  .....+.+... +|+ .+|+|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~--~~~l~~el~~~~~-~i----~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlN  248 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQ--EDSLFEEMLQVAN-AI----QPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVT  248 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTT--CHHHHHHHHHHHH-HH----CCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEE
T ss_pred             HHHCCCcEEEEeCCCCccc--chhHHHHHHHHHh-hh----cCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEe
Confidence               3568999999997642  1111111112111 11    3899999999987643  33444444433 675 89999


Q ss_pred             cCCCCCh
Q 026538          212 KTDTVFP  218 (237)
Q Consensus       212 K~Dl~~~  218 (237)
                      |+|....
T Consensus       249 K~D~~~~  255 (504)
T 2j37_W          249 KLDGHAK  255 (504)
T ss_dssp             CTTSCCC
T ss_pred             CCccccc
Confidence            9998743

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.16  E-value=1.4e-11  Score=106.28  Aligned_cols=88  Identities=23%  Similarity=0.197  Sum_probs=45.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE--c------------------CCeEEEEeCCCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L------------------GTKLCLVDLPGYGF  150 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~--~------------------~~~~~liDTpG~~~  150 (237)
                      ...+|+++|.+|||||||+|+|++..  ..+++.|++|.+.....  .                  +..+.+|||||+..
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~--~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQ--ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC--ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            44689999999999999999999983  36777888876542211  1                  23599999999865


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCC
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  186 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~  186 (237)
                      .....      ..+...++.....+|++++|+|++.
T Consensus        99 ~as~~------~glg~~~l~~ir~aD~Il~VvD~~~  128 (396)
T 2ohf_A           99 GAHNG------QGLGNAFLSHISACDGIFHLTRAFE  128 (396)
T ss_dssp             --------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred             ccchh------hHHHHHHHHHHHhcCeEEEEEecCC
Confidence            32110      1111122222334999999999863

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.15  E-value=1.5e-11  Score=97.79  Aligned_cols=107  Identities=9%  Similarity=-0.007  Sum_probs=63.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc----ceeeccCCCCceEE-----------EEE------------------EEcC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQT-----------INF------------------FKLG  137 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~----~~~~~~~~~g~t~~-----------~~~------------------~~~~  137 (237)
                      ..++|+++|.+|||||||+|+|++..    ....+...++++.+           ...                  ...+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            34799999999999999999998651    12223323332110           000                  0123


Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      ..+.+|||+|....  ..            ++.  ...+.+++|+|+..+....    .......+.|+++|+||+|+.+
T Consensus       109 ~d~iiidt~G~~~~--~~------------~~~--~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~~iiv~NK~Dl~~  168 (221)
T 2wsm_A          109 CDLLLIENVGNLIC--PV------------DFD--LGENYRVVMVSVTEGDDVV----EKHPEIFRVADLIVINKVALAE  168 (221)
T ss_dssp             CSEEEEEEEEBSSG--GG------------GCC--CSCSEEEEEEEGGGCTTHH----HHCHHHHHTCSEEEEECGGGHH
T ss_pred             CCEEEEeCCCCCCC--Cc------------hhc--cccCcEEEEEeCCCcchhh----hhhhhhhhcCCEEEEecccCCc
Confidence            56888998884210  00            010  1257889999987653221    1112223589999999999854

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.10  E-value=1.4e-10  Score=98.38  Aligned_cols=24  Identities=29%  Similarity=0.464  Sum_probs=21.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ....++++|++|||||||+|.|++
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999984

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.08  E-value=3.7e-11  Score=98.53  Aligned_cols=59  Identities=27%  Similarity=0.544  Sum_probs=42.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY  152 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~  152 (237)
                      .+++++|.+|+|||||+|+|++. ....+++.+|+|+.......+..+.+|||||+..+.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~  158 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYKN  158 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccCc
Confidence            69999999999999999999998 445678889999887777777889999999987653

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.01  E-value=4.8e-10  Score=101.27  Aligned_cols=99  Identities=16%  Similarity=0.185  Sum_probs=58.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccC-CCCceEEEEEE------EcCCeEEEEeCCCCCCccc--chHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFF------KLGTKLCLVDLPGYGFAYA--KEEVKDAW  161 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g~t~~~~~~------~~~~~~~liDTpG~~~~~~--~~~~~~~~  161 (237)
                      ..++|+|+|.||+|||||+|+|+|......++. ..++|..+..+      ..+..+.|+||||+.+...  .......+
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~f  116 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIF  116 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHH
Confidence            457899999999999999999999842112222 22444444332      1367899999999986432  11111111


Q ss_pred             HHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHH
Q 026538          162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL  198 (237)
Q Consensus       162 ~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~  198 (237)
                       . +...+     ++  ++|+|+..++...+...+..
T Consensus       117 -a-la~ll-----ss--~lv~n~~~~i~~~dl~~l~~  144 (592)
T 1f5n_A          117 -A-LAVLL-----SS--TFVYNSIGTINQQAMDQLYY  144 (592)
T ss_dssp             -H-HHHHH-----CS--EEEEEEESCSSHHHHHTTHH
T ss_pred             -H-HHHHh-----cC--eEEEECCCCccHHHHHHHHH
Confidence             0 11111     22  56677666777777554443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.01  E-value=1.2e-10  Score=100.55  Aligned_cols=88  Identities=16%  Similarity=0.188  Sum_probs=59.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--EE-cC-----------------CeEEEEeCCCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-LG-----------------TKLCLVDLPGYGF  150 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~~-~~-----------------~~~~liDTpG~~~  150 (237)
                      ...+|+++|.+|||||||+|+|++. ..+.+++.|++|.+...  .. .+                 ..+.+|||||+..
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~-~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC-CcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4569999999999999999999997 43477888887765321  11 11                 3589999999765


Q ss_pred             cccc-hHHHHHHHHHHHHHHhccccccEEEEEEeCCC
Q 026538          151 AYAK-EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  186 (237)
Q Consensus       151 ~~~~-~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~  186 (237)
                      ..+. +.+..       .++.....+|.+++|+|+..
T Consensus        98 ~~s~~e~L~~-------~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGN-------AFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCH-------HHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHH-------HHHHHHHHHHHHHHHHhccc
Confidence            3222 11211       12222234899999999753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.94  E-value=4.6e-09  Score=91.21  Aligned_cols=114  Identities=19%  Similarity=0.235  Sum_probs=69.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccce---eeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGV---VRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~---~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+|++|||||||+|.|+|....   ........+|+....+..  ...++++|+||+...  ...+.    .++..
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~----~~L~~  143 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST--NFPPD----TYLEK  143 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS--SCCHH----HHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch--HHHHH----HHHHH
Confidence            58999999999999999999994211   111111112222122222  236899999998642  11122    22221


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +  .....+..++ ++..+ .+.....+...+...+.|+++|+||.|++
T Consensus       144 ~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll  188 (413)
T 1tq4_A          144 M--KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD  188 (413)
T ss_dssp             T--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred             c--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence            1  1122355554 76654 56777788888888889999999999975

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.93  E-value=1.7e-08  Score=92.10  Aligned_cols=79  Identities=18%  Similarity=0.265  Sum_probs=48.1

Q ss_pred             CeEEEEeCCCCCCcc---cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCC-hhHHHHHHHHHhcCCcEEEEEecC
Q 026538          138 TKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQTKYQVVLTKT  213 (237)
Q Consensus       138 ~~~~liDTpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~-~~~~~~~~~l~~~~~piilv~NK~  213 (237)
                      ..+.++|.||+....   ........+..++..|....  ..++++++++...+. .....+++.+...+.+.++|+||+
T Consensus       147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~--~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~  224 (608)
T 3szr_A          147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQ--ETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP  224 (608)
T ss_dssp             CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSS--SCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG
T ss_pred             CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcC--CCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch
Confidence            569999999976521   12223445566676665442  355666666543332 333566666666788999999999


Q ss_pred             CCCCh
Q 026538          214 DTVFP  218 (237)
Q Consensus       214 Dl~~~  218 (237)
                      |++..
T Consensus       225 Dlv~~  229 (608)
T 3szr_A          225 DLVDK  229 (608)
T ss_dssp             GGSSS
T ss_pred             hhcCc
Confidence            99854

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.80  E-value=1.3e-07  Score=82.51  Aligned_cols=119  Identities=19%  Similarity=0.272  Sum_probs=67.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc-----cceeecc-CC--CCc---------eEEEEEEE-------------------
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTS-DK--PGL---------TQTINFFK-------------------  135 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~-----~~~~~~~-~~--~g~---------t~~~~~~~-------------------  135 (237)
                      ...|+++|.+|+||||++..|...     ..+..+. +.  ++.         ...+.++.                   
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~  179 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK  179 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence            457789999999999999998731     1222221 10  000         00000110                   


Q ss_pred             -cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCC
Q 026538          136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  214 (237)
Q Consensus       136 -~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D  214 (237)
                       .+..+.|+||||....  ..........+. .    ...+|.+++|+|+..+  .........+...-.+..+|+||+|
T Consensus       180 ~~~~DvVIIDTaGrl~~--d~~lm~el~~i~-~----~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKlD  250 (443)
T 3dm5_A          180 SKGVDIIIVDTAGRHKE--DKALIEEMKQIS-N----VIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKLD  250 (443)
T ss_dssp             HTTCSEEEEECCCCSSC--CHHHHHHHHHHH-H----HHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECCS
T ss_pred             hCCCCEEEEECCCcccc--hHHHHHHHHHHH-H----hhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECCC
Confidence             1478999999996542  111111122211 1    1127899999998754  3334444555554456779999999


Q ss_pred             CCChH
Q 026538          215 TVFPI  219 (237)
Q Consensus       215 l~~~~  219 (237)
                      .....
T Consensus       251 ~~~~g  255 (443)
T 3dm5_A          251 GSAKG  255 (443)
T ss_dssp             SCSSH
T ss_pred             Ccccc
Confidence            87543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.74  E-value=4.5e-08  Score=85.59  Aligned_cols=117  Identities=16%  Similarity=0.161  Sum_probs=67.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc-----ceeeccCC------------------------CCceEEEE-E------EE
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK------------------------PGLTQTIN-F------FK  135 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~~------------------------~g~t~~~~-~------~~  135 (237)
                      ...|+++|.+|+||||+++.|....     .+..++.-                        .+++.+.. .      ..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999998631     12211110                        00222210 0      00


Q ss_pred             cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCC-c-EEEEEecC
Q 026538          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-K-YQVVLTKT  213 (237)
Q Consensus       136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p-iilv~NK~  213 (237)
                      .+..+.|+||||....  ..   .....+ .. +.....+|.+++|+|+..+.  ......+.+.. .. | ..+|+||+
T Consensus       179 ~~~D~vIIDT~G~~~~--~~---~l~~~l-~~-i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~  248 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKE--EK---GLLEEM-KQ-IKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKL  248 (432)
T ss_dssp             SSCSEEEEECCCSCSS--HH---HHHHHH-HH-TTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECS
T ss_pred             hCCCEEEEcCCCCccc--cH---HHHHHH-HH-HHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCC
Confidence            3567999999997541  11   111222 11 22333489999999987553  22333333333 35 6 88999999


Q ss_pred             CCCCh
Q 026538          214 DTVFP  218 (237)
Q Consensus       214 Dl~~~  218 (237)
                      |....
T Consensus       249 D~~~~  253 (432)
T 2v3c_C          249 DGSAK  253 (432)
T ss_dssp             SSCST
T ss_pred             CCccc
Confidence            98643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.68  E-value=2.2e-08  Score=79.50  Aligned_cols=25  Identities=20%  Similarity=0.399  Sum_probs=22.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..++|+++|.+|||||||+++|+..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3579999999999999999999875

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.64  E-value=2.7e-07  Score=80.52  Aligned_cols=119  Identities=21%  Similarity=0.230  Sum_probs=65.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc-----ceeecc-C---------------CCCceE-------EEE--------EE-
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-D---------------KPGLTQ-------TIN--------FF-  134 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~-~---------------~~g~t~-------~~~--------~~-  134 (237)
                      ...|+++|++|+||||++..|....     .+..++ +               ..+...       +..        .. 
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~  176 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV  176 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence            4577889999999999999987321     111111 1               001000       000        00 


Q ss_pred             EcCCeEEEEeCCCCCCc-ccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecC
Q 026538          135 KLGTKLCLVDLPGYGFA-YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT  213 (237)
Q Consensus       135 ~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~  213 (237)
                      ..+..+.|+||||.... .... .......+... .    ..+.+++|+|+..+  .......+.+...-.+..+|+||+
T Consensus       177 ~~~~DvvIIDTaGr~~~~~d~~-lm~el~~i~~~-~----~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKl  248 (433)
T 3kl4_A          177 KNKMDIIIVDTAGRHGYGEETK-LLEEMKEMYDV-L----KPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKM  248 (433)
T ss_dssp             TTTCSEEEEEECCCSSSCCTTH-HHHHHHHHHHH-H----CCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECG
T ss_pred             hcCCCEEEEECCCCccccCCHH-HHHHHHHHHHh-h----CCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEecc
Confidence            01567999999996430 1111 11112222211 1    26899999998754  333445555554445688999999


Q ss_pred             CCCCh
Q 026538          214 DTVFP  218 (237)
Q Consensus       214 Dl~~~  218 (237)
                      |....
T Consensus       249 D~~a~  253 (433)
T 3kl4_A          249 DGTAK  253 (433)
T ss_dssp             GGCSC
T ss_pred             ccccc
Confidence            97643

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.48  E-value=1.8e-07  Score=79.12  Aligned_cols=69  Identities=10%  Similarity=0.061  Sum_probs=43.4

Q ss_pred             cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCC---------CCChh--HHHHHHHHHh---
Q 026538          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW---------GVKPR--DHELISLMER---  201 (237)
Q Consensus       136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~---------~~~~~--~~~~~~~l~~---  201 (237)
                      .+..+.+|||+|..      ..    ..+...|+..   ++++++|+|.+.         .....  ...++..+..   
T Consensus       159 ~~v~l~iwDtaGQe------~~----R~~w~~yy~~---a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~  225 (340)
T 4fid_A          159 KDIPFHLIDVGGQR------SE----RKXWVSFFSD---VDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF  225 (340)
T ss_dssp             SSCEEEEEECCSCH------HH----HHHHHTTSCS---CSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred             eeeeeccccCCCcc------cc----cccHHHHhcc---CCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence            36789999999942      22    3333445544   999999999762         11111  1233333332   


Q ss_pred             -cCCcEEEEEecCCCCC
Q 026538          202 -SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       202 -~~~piilv~NK~Dl~~  217 (237)
                       .++|+++++||+|+..
T Consensus       226 ~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          226 LKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             GTTSEEEEEEECHHHHH
T ss_pred             cCCCeEEEEEECchhhh
Confidence             3689999999999853

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.42  E-value=4.4e-07  Score=76.35  Aligned_cols=69  Identities=13%  Similarity=0.128  Sum_probs=42.4

Q ss_pred             cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCC-------CCCC-hh---HHHHHHHHHh---
Q 026538          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-------WGVK-PR---DHELISLMER---  201 (237)
Q Consensus       136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~-------~~~~-~~---~~~~~~~l~~---  201 (237)
                      .+..+.+|||+|..      .    +......|+..   ++++++|+|.+       +.-. ..   ...+++.+..   
T Consensus       165 ~~v~l~iwDtgGQe------~----~R~~w~~yf~~---~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~  231 (327)
T 3ohm_A          165 QSVIFRMVDVGGQR------S----ERRKWIHCFEN---VTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW  231 (327)
T ss_dssp             TTEEEEEEEECCSH------H----HHTTGGGGCSS---CSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred             eceeeEEEEcCCch------h----HHHHHHHHhCC---CCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence            46779999999952      1    22233344443   89999999754       1111 11   1233333332   


Q ss_pred             -cCCcEEEEEecCCCCC
Q 026538          202 -SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       202 -~~~piilv~NK~Dl~~  217 (237)
                       .++|+++++||+|+..
T Consensus       232 ~~~~~iiL~~NK~DL~~  248 (327)
T 3ohm_A          232 FQNSSVILFLNKKDLLE  248 (327)
T ss_dssp             GTTCEEEEEEECHHHHH
T ss_pred             cCCceEEEEEECchhhh
Confidence             3689999999999853

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.31  E-value=1.4e-06  Score=76.32  Aligned_cols=25  Identities=24%  Similarity=0.406  Sum_probs=21.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+|+|++++|||||+|.|++.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            3457899999999999999999974

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.27  E-value=7.5e-06  Score=68.02  Aligned_cols=119  Identities=20%  Similarity=0.262  Sum_probs=64.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc-----ceeecc-CC--CC-------------c-------eEEE--------EEEE
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-DK--PG-------------L-------TQTI--------NFFK  135 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~-~~--~g-------------~-------t~~~--------~~~~  135 (237)
                      ...++++|++|+||||++..|.+..     .+..+. +.  ++             .       ..+.        ....
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            3467889999999999999887421     111111 10  00             0       0000        0000


Q ss_pred             -cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecC
Q 026538          136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKT  213 (237)
Q Consensus       136 -~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~  213 (237)
                       .++.+.++||||.......+........+ ....    .+|.+++|+|+..+  .......+.+.. ..| ..+|+||+
T Consensus       178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i-~~~~----~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~  249 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNI-YEAI----KPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKM  249 (297)
T ss_dssp             HTTCSEEEEECCCSCCTTCHHHHHHHHHHH-HHHH----CCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECG
T ss_pred             hCCCCEEEEeCCCCcccccHHHHHHHHHHH-HHHh----cCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCC
Confidence             35679999999975300011111111111 1111    28999999998643  233334444443 366 77899999


Q ss_pred             CCCCh
Q 026538          214 DTVFP  218 (237)
Q Consensus       214 Dl~~~  218 (237)
                      |....
T Consensus       250 D~~~~  254 (297)
T 1j8m_F          250 DGTAK  254 (297)
T ss_dssp             GGCTT
T ss_pred             CCCcc
Confidence            97643

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.26  E-value=1.1e-05  Score=71.17  Aligned_cols=122  Identities=20%  Similarity=0.229  Sum_probs=63.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc-----ceeec-cCCCCc-----------eEEEEEEE------------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRT-SDKPGL-----------TQTINFFK------------------  135 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~-~~~~g~-----------t~~~~~~~------------------  135 (237)
                      ..-.++|+|.+|||||||++.|.+..     .+... .+....           -..+.+..                  
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a  371 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA  371 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence            34478999999999999999998642     11111 111000           00011110                  


Q ss_pred             --cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc-cccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEec
Q 026538          136 --LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST-RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK  212 (237)
Q Consensus       136 --~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK  212 (237)
                        .+..+.|+||+|....  ..........+....... ....+-+++++|+..+  ......++.+...-....+|+||
T Consensus       372 ~~~~~DvVLIDTaGrl~~--~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~itgvIlTK  447 (503)
T 2yhs_A          372 KARNIDVLIADTAGRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGLTGITLTK  447 (503)
T ss_dssp             HHTTCSEEEECCCCSCCC--HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             HhcCCCEEEEeCCCccch--hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCCCEEEEEc
Confidence              1466899999997542  111111222222211111 1124678899997644  22333444444322234578999


Q ss_pred             CCCC
Q 026538          213 TDTV  216 (237)
Q Consensus       213 ~Dl~  216 (237)
                      .|-.
T Consensus       448 LD~t  451 (503)
T 2yhs_A          448 LDGT  451 (503)
T ss_dssp             GGGC
T ss_pred             CCCc
Confidence            9964

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.26  E-value=5.6e-06  Score=72.34  Aligned_cols=115  Identities=19%  Similarity=0.170  Sum_probs=61.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHh-------cccceeeccCCC---Cce-----------EEEE-----------------E
Q 026538           92 LPEIAFAGRSNVGKSSMLNALT-------RQWGVVRTSDKP---GLT-----------QTIN-----------------F  133 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~-------~~~~~~~~~~~~---g~t-----------~~~~-----------------~  133 (237)
                      ...|+++|.+|+||||+...|.       |. .+..+..-+   +..           .++.                 .
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~  178 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE  178 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence            3477889999999999998887       33 222211111   100           0000                 0


Q ss_pred             EE-cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEe
Q 026538          134 FK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLT  211 (237)
Q Consensus       134 ~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~N  211 (237)
                      .. .++.+.|+||||....  ..........+     .....++.+++|+|+..+.  ......+.+.. ..+ .-+|+|
T Consensus       179 ~~~~~~D~VIIDTpG~l~~--~~~l~~~L~~~-----~~~~~p~~vllVvda~~g~--~~~~~~~~f~~-~l~i~gvVln  248 (433)
T 2xxa_A          179 AKLKFYDVLLVDTAGRLHV--DEAMMDEIKQV-----HASINPVETLFVVDAMTGQ--DAANTAKAFNE-ALPLTGVVLT  248 (433)
T ss_dssp             HHHTTCSEEEEECCCCCTT--CHHHHHHHHHH-----HHHSCCSEEEEEEETTBCT--THHHHHHHHHH-HSCCCCEEEE
T ss_pred             HHhCCCCEEEEECCCcccc--cHHHHHHHHHH-----HHhhcCcceeEEeecchhH--HHHHHHHHHhc-cCCCeEEEEe
Confidence            01 2567999999996431  11111111111     1111278999999987552  22333333332 244 357999


Q ss_pred             cCCCCC
Q 026538          212 KTDTVF  217 (237)
Q Consensus       212 K~Dl~~  217 (237)
                      |+|...
T Consensus       249 K~D~~~  254 (433)
T 2xxa_A          249 KVDGDA  254 (433)
T ss_dssp             CTTSSS
T ss_pred             cCCCCc
Confidence            999753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.17  E-value=4e-07  Score=75.97  Aligned_cols=57  Identities=33%  Similarity=0.523  Sum_probs=34.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCC-------CCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~-------~g~t~~~~~~~~~~~~~liDTpG~~~  150 (237)
                      ...++++|++|||||||+|+|.+... ...+..       .++|+........ ...++||||+..
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~  236 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS  236 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred             CCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccc
Confidence            45899999999999999999998632 122221       2344433333333 358999999865

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.10  E-value=8.4e-06  Score=68.67  Aligned_cols=116  Identities=22%  Similarity=0.241  Sum_probs=62.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc-----ceeec-cCC--CCc---------eEEEEEEE-------------------
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRT-SDK--PGL---------TQTINFFK-------------------  135 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~-~~~--~g~---------t~~~~~~~-------------------  135 (237)
                      .-.++++|++||||||+++.|.+..     .+... .+.  ++.         ...+.+..                   
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~  208 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK  208 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence            4478999999999999999998642     11110 010  000         00000110                   


Q ss_pred             -cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCC
Q 026538          136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  214 (237)
Q Consensus       136 -~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D  214 (237)
                       .+..+.++||+|.....  .........+. ..+    .+|-.++++|+..+  ......++.+........+++||.|
T Consensus       209 ~~~~d~vliDtaG~~~~~--~~l~~eL~~i~-ral----~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD  279 (328)
T 3e70_C          209 ARGIDVVLIDTAGRSETN--RNLMDEMKKIA-RVT----KPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLD  279 (328)
T ss_dssp             HHTCSEEEEEECCSCCTT--TCHHHHHHHHH-HHH----CCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred             hccchhhHHhhccchhHH--HHHHHHHHHHH-HHh----cCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence             14568899999975321  11111122221 111    16889999997644  2333444444433234578889999


Q ss_pred             CC
Q 026538          215 TV  216 (237)
Q Consensus       215 l~  216 (237)
                      ..
T Consensus       280 ~~  281 (328)
T 3e70_C          280 AD  281 (328)
T ss_dssp             GC
T ss_pred             Cc
Confidence            64

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.06  E-value=6.6e-06  Score=68.60  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.|+++|++|||||||++.|.+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            458899999999999999999853

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.04  E-value=0.00012  Score=61.37  Aligned_cols=24  Identities=21%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ....|+++|.+|+||||++..|.+
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            344788999999999999988874

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.02  E-value=6.5e-06  Score=68.54  Aligned_cols=55  Identities=33%  Similarity=0.428  Sum_probs=35.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCC-------CceEEEEEEEcCCeEEEEeCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYG  149 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~-------g~t~~~~~~~~~~~~~liDTpG~~  149 (237)
                      ..++++|++|||||||+|+|. ... ...+...       .+|+..........-.++||||+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~  227 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS  227 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCC-CCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence            478999999999999999998 632 2222221       244433333332345789999975

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.00  E-value=3.2e-05  Score=64.46  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=20.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+++|++|+||||++..|.+.
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHH
Confidence            346889999999999999988753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.97  E-value=2.9e-06  Score=72.19  Aligned_cols=58  Identities=34%  Similarity=0.408  Sum_probs=36.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCC---CC----ceEEEEEEEcCCeEEEEeCCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK---PG----LTQTINFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~---~g----~t~~~~~~~~~~~~~liDTpG~~~  150 (237)
                      -.++|+|++|||||||+|.|++.......+..   .|    +|.............++||||+.+
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e  280 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE  280 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence            47899999999999999999987420111111   12    333334444444457899999644

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.89  E-value=6.6e-06  Score=68.46  Aligned_cols=57  Identities=35%  Similarity=0.434  Sum_probs=35.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCC-------CCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~-------~g~t~~~~~~~~~~~~~liDTpG~~~  150 (237)
                      -.++++|++|||||||+|.|.+... ...+..       ..+|...........-.++|+||+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~  233 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN  233 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred             CeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence            4789999999999999999998742 111111       12333222222223457899999754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.81  E-value=0.00017  Score=62.63  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=19.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ...|+++|.+|+||||++..|.+
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34678889999999999988874

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.78  E-value=7.1e-05  Score=61.62  Aligned_cols=56  Identities=13%  Similarity=0.143  Sum_probs=40.2

Q ss_pred             ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI  228 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l  228 (237)
                      ....+|+|++|+|+..+.......+-+.+  .++|+++|+||+|+.+....+...+.+
T Consensus        20 ~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~   75 (282)
T 1puj_A           20 KLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHF   75 (282)
T ss_dssp             HGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             HHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence            34449999999999887666544444444  468999999999999865554444443

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.72  E-value=6e-05  Score=62.52  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ...++++|++|+||||++..|.+
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45889999999999999998874

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.65  E-value=2.3e-05  Score=61.12  Aligned_cols=27  Identities=33%  Similarity=0.404  Sum_probs=23.1

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .....|+|+|++|||||||++.|++..
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            345578999999999999999999763

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.64  E-value=3.6e-05  Score=63.99  Aligned_cols=69  Identities=17%  Similarity=0.173  Sum_probs=45.4

Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-Chh-HHHHHHHHHhcCCcEEEEEecCCC
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPR-DHELISLMERSQTKYQVVLTKTDT  215 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~-~~~~~~~l~~~~~piilv~NK~Dl  215 (237)
                      ..+.+|||  ...-          ..+.+.|+..   +|++++|+|+..+. ... ...++..+...++|+++|+||+|+
T Consensus        63 ~~~~iwD~--qer~----------~~l~~~~~~~---ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL  127 (301)
T 1u0l_A           63 GSGVIENV--LHRK----------NLLTKPHVAN---VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDL  127 (301)
T ss_dssp             SSEEEEEE--CCCS----------CEETTTTEES---CCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred             CeEEEEEE--cccc----------ceeecccccc---CCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHc
Confidence            47999999  2210          1112233333   99999999988653 222 234555556668999999999999


Q ss_pred             CChHHH
Q 026538          216 VFPIDV  221 (237)
Q Consensus       216 ~~~~~~  221 (237)
                      .+..++
T Consensus       128 ~~~~~v  133 (301)
T 1u0l_A          128 YDEDDL  133 (301)
T ss_dssp             CCHHHH
T ss_pred             CCchhH
Confidence            876543

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.62  E-value=0.00036  Score=54.78  Aligned_cols=121  Identities=14%  Similarity=0.124  Sum_probs=55.7

Q ss_pred             CCCCEEEEecC-CCCchhhHHHHHhcccceeeccCCC-----CceEEEEEE----------E------------------
Q 026538           90 PDLPEIAFAGR-SNVGKSSMLNALTRQWGVVRTSDKP-----GLTQTINFF----------K------------------  135 (237)
Q Consensus        90 ~~~~~i~lvG~-~~~GKSTLin~L~~~~~~~~~~~~~-----g~t~~~~~~----------~------------------  135 (237)
                      ...|+++++|+ -..=+.+|+..|.......++...+     |.-..+.+.          .                  
T Consensus        14 ~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~~   93 (227)
T 3l82_B           14 QNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTS   93 (227)
T ss_dssp             CCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC--------------
T ss_pred             CCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhhh
Confidence            46689999997 3444668998888764333332222     111111110          0                  


Q ss_pred             cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHH-HH---HHHHHh----cCCcEE
Q 026538          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-EL---ISLMER----SQTKYQ  207 (237)
Q Consensus       136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-~~---~~~l~~----~~~pii  207 (237)
                      ...++....+||-.+...+..++..|..    |+..   +|++|||||+++.-..... ++   ...+..    .++|++
T Consensus        94 ~~~k~~~~~~~~~~~~GGQ~klRplWr~----Yy~~---TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLL  166 (227)
T 3l82_B           94 AVNKMFSRHNEGDDQQGSRYSVIPQIQK----VCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL  166 (227)
T ss_dssp             -----------------------CCHHH----HHHH---CSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEE
T ss_pred             hhhhcccccCCCccccCcHHHHHHHHHH----HhcC---CCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEE
Confidence            0233556667763222233444444544    4444   9999999998764221122 22   222222    368999


Q ss_pred             EEEecC-CCCC
Q 026538          208 VVLTKT-DTVF  217 (237)
Q Consensus       208 lv~NK~-Dl~~  217 (237)
                      |..||. |+..
T Consensus       167 VlANKqqDlp~  177 (227)
T 3l82_B          167 VLSCISQGDVK  177 (227)
T ss_dssp             EEEEESSTTSC
T ss_pred             EEeCCCcCccC
Confidence            999996 6653

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.62  E-value=0.0019  Score=49.72  Aligned_cols=64  Identities=9%  Similarity=-0.033  Sum_probs=42.7

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc-----CCcEEEEEe
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT  211 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~N  211 (237)
                      .+.+.|+|||+....        ........       +|.+++++.....- .....+++.+...     +.++.+|+|
T Consensus        75 ~yD~viiD~~~~~~~--------~~~~~l~~-------ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N  138 (206)
T 4dzz_A           75 DYDFAIVDGAGSLSV--------ITSAAVMV-------SDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLIT  138 (206)
T ss_dssp             TSSEEEEECCSSSSH--------HHHHHHHH-------CSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEEC
T ss_pred             CCCEEEEECCCCCCH--------HHHHHHHH-------CCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            467999999985421        11112222       89999999877544 4455666666543     467899999


Q ss_pred             cCCCC
Q 026538          212 KTDTV  216 (237)
Q Consensus       212 K~Dl~  216 (237)
                      ++|..
T Consensus       139 ~~~~~  143 (206)
T 4dzz_A          139 RKIEM  143 (206)
T ss_dssp             SBCTT
T ss_pred             ccCCC
Confidence            99954

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.51  E-value=2.9e-05  Score=66.26  Aligned_cols=68  Identities=18%  Similarity=0.177  Sum_probs=40.7

Q ss_pred             cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC--------Chh---HHHHHHHHHh---
Q 026538          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPR---DHELISLMER---  201 (237)
Q Consensus       136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--------~~~---~~~~~~~l~~---  201 (237)
                      .+..+.+|||+|...      .+    .....|+.   .+++++||+|.+..-        ...   ...++..+..   
T Consensus       199 ~~~~l~i~Dt~Gq~~------~r----~~w~~~f~---~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~  265 (362)
T 1zcb_A          199 KNVPFKMVDVGGQRS------ER----KRWFECFD---SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV  265 (362)
T ss_dssp             TTEEEEEEEECC-----------------CTTSCT---TCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred             CCeEEEEEeccchhh------hh----hhHHHHhC---CCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence            367899999999632      11    22222333   389999999987521        011   1233343332   


Q ss_pred             -cCCcEEEEEecCCCC
Q 026538          202 -SQTKYQVVLTKTDTV  216 (237)
Q Consensus       202 -~~~piilv~NK~Dl~  216 (237)
                       .+.|+++|+||+|+.
T Consensus       266 ~~~~piILv~NK~DL~  281 (362)
T 1zcb_A          266 FSNVSIILFLNKTDLL  281 (362)
T ss_dssp             GTTSEEEEEEECHHHH
T ss_pred             hCCCCEEEEEEChhhh
Confidence             368999999999985

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.50  E-value=0.00098  Score=55.11  Aligned_cols=24  Identities=17%  Similarity=0.101  Sum_probs=20.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...++++|++|+||||++..|.+.
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~~  121 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLALY  121 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346788999999999999888753

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=97.49  E-value=2e-05  Score=66.96  Aligned_cols=68  Identities=12%  Similarity=0.136  Sum_probs=43.1

Q ss_pred             cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCC--------h---hHHHHHHHHHh---
Q 026538          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--------P---RDHELISLMER---  201 (237)
Q Consensus       136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~--------~---~~~~~~~~l~~---  201 (237)
                      .+..+.+|||+|...      .+..|    ..|+..   +++++||+|.+..-+        .   ....++..+..   
T Consensus       191 ~~~~l~iwDt~GQe~------~r~~w----~~yf~~---a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~  257 (353)
T 1cip_A          191 KDLHFKMFDVGGQRS------ERKKW----IHCFEG---VTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW  257 (353)
T ss_dssp             TTEEEEEEEECCSGG------GGGGG----GGGCTT---CSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred             CCeeEEEEeCCCchh------hhHHH----HHHHhc---CCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence            367799999999642      12222    233333   999999999875211        1   11234444433   


Q ss_pred             -cCCcEEEEEecCCCC
Q 026538          202 -SQTKYQVVLTKTDTV  216 (237)
Q Consensus       202 -~~~piilv~NK~Dl~  216 (237)
                       .+.|+++|+||+|+.
T Consensus       258 ~~~~piiLv~NK~DL~  273 (353)
T 1cip_A          258 FTDTSIILFLNKKDLF  273 (353)
T ss_dssp             GTTSEEEEEEECHHHH
T ss_pred             ccCCcEEEEEECcCch
Confidence             368999999999985

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.45  E-value=0.00044  Score=60.37  Aligned_cols=63  Identities=21%  Similarity=0.238  Sum_probs=38.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc-----------------cceeeccCCCCceEEEEEEE--------cC--CeEEEE
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ-----------------WGVVRTSDKPGLTQTINFFK--------LG--TKLCLV  143 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~-----------------~~~~~~~~~~g~t~~~~~~~--------~~--~~~~li  143 (237)
                      ....|+|+|..++|||+|+|.|++.                 .+....+....+|+.+-+..        .+  ..+.++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll  145 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM  145 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred             ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence            4457789999999999999976521                 11111112233555553221        12  358999


Q ss_pred             eCCCCCCccc
Q 026538          144 DLPGYGFAYA  153 (237)
Q Consensus       144 DTpG~~~~~~  153 (237)
                      ||.|+.+...
T Consensus       146 DTEG~~d~~~  155 (457)
T 4ido_A          146 DTQGTFDSQS  155 (457)
T ss_dssp             EECCBTCTTC
T ss_pred             eccCCCCccc
Confidence            9999887533

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.42  E-value=5.9e-05  Score=65.10  Aligned_cols=68  Identities=9%  Similarity=0.081  Sum_probs=43.1

Q ss_pred             cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC---------CCh--hHHHHHHHHHh---
Q 026538          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---------VKP--RDHELISLMER---  201 (237)
Q Consensus       136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~---------~~~--~~~~~~~~l~~---  201 (237)
                      .+..+.+|||+|...      .+    .....|+..   ++++++|+|.+..         ...  ....++..+..   
T Consensus       215 ~~v~l~iwDtaGQe~------~r----~~w~~yf~~---a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~  281 (402)
T 1azs_C          215 DKVNFHMFDVGGQRD------ER----RKWIQCFND---VTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW  281 (402)
T ss_dssp             TTEEEEEEEECCSGG------GG----GGGGGGTTT---CCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred             CCccceecccchhhh------hh----hhhHhhccC---CCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence            367799999999642      11    222334433   9999999998751         111  11234444433   


Q ss_pred             -cCCcEEEEEecCCCC
Q 026538          202 -SQTKYQVVLTKTDTV  216 (237)
Q Consensus       202 -~~~piilv~NK~Dl~  216 (237)
                       .++|+++|+||+|+.
T Consensus       282 ~~~~piiLvgNK~DL~  297 (402)
T 1azs_C          282 LRTISVILFLNKQDLL  297 (402)
T ss_dssp             CSSCCEEEEEECHHHH
T ss_pred             CCCCeEEEEEEChhhh
Confidence             268999999999984

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.39  E-value=8.2e-05  Score=56.98  Aligned_cols=23  Identities=22%  Similarity=0.566  Sum_probs=21.1

Q ss_pred             EEEEecCCCCchhhHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +++++|++|||||||++.|++..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999863

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.37  E-value=7.2e-05  Score=60.93  Aligned_cols=51  Identities=10%  Similarity=0.049  Sum_probs=36.2

Q ss_pred             ccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       175 ~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                      +|+|++|+|+..+.......+- .+   ++|.++|+||+|+.++.......+.++
T Consensus        22 ~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~~~~   72 (262)
T 3cnl_A           22 VNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVEFFK   72 (262)
T ss_dssp             CSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             CCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHHHHH
Confidence            9999999999876555432211 22   799999999999998765555444443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.37  E-value=7.5e-05  Score=58.05  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=20.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..++|+|++|||||||++.|++.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            47899999999999999999875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.36  E-value=0.0001  Score=56.26  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=21.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..++|+|++|||||||++.|.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            47899999999999999999875

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.32  E-value=8.5e-05  Score=63.15  Aligned_cols=67  Identities=16%  Similarity=0.165  Sum_probs=40.4

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCC---------CCCh--hHHHHHHHHHh----
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW---------GVKP--RDHELISLMER----  201 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~---------~~~~--~~~~~~~~l~~----  201 (237)
                      ...+.+|||+|...      .+    .+...|+..   ++++++|+|.+.         ....  ....+++.+..    
T Consensus       182 ~v~l~iwDtaGQe~------~r----~~~~~y~~~---~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~  248 (354)
T 2xtz_A          182 GEVYRLFDVGGQRN------ER----RKWIHLFEG---VTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  248 (354)
T ss_dssp             --EEEEEEECCSTT------GG----GGTGGGCTT---EEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred             ceeeEEEECCCchh------hh----HHHHHHhCC---CCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence            46799999999643      11    222233333   899999999751         1111  11233444432    


Q ss_pred             cCCcEEEEEecCCCC
Q 026538          202 SQTKYQVVLTKTDTV  216 (237)
Q Consensus       202 ~~~piilv~NK~Dl~  216 (237)
                      .++|+++|+||+|+.
T Consensus       249 ~~~piiLvgNK~DL~  263 (354)
T 2xtz_A          249 EKTSFMLFLNKFDIF  263 (354)
T ss_dssp             SSCEEEEEEECHHHH
T ss_pred             CCCeEEEEEECcchh
Confidence            368999999999984

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.27  E-value=0.0007  Score=56.17  Aligned_cols=46  Identities=15%  Similarity=0.138  Sum_probs=35.4

Q ss_pred             cccEEEEEEeCCCCC-ChhH-HHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          174 SLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       174 ~~d~v~~vvd~~~~~-~~~~-~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                      .+|.+++|+|+.++. +... ..++..+...++|+++|+||+|+.++.
T Consensus        79 naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~  126 (302)
T 2yv5_A           79 NVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEE  126 (302)
T ss_dssp             SCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH
T ss_pred             hcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCcc
Confidence            399999999988653 4332 345556666789999999999998765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.26  E-value=0.00016  Score=56.50  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=22.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++|+|++|||||||++.|.+..
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3478999999999999999999863

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.24  E-value=0.00011  Score=56.80  Aligned_cols=21  Identities=38%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             EEEecCCCCchhhHHHHHhcc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~  115 (237)
                      |+|+|++|||||||++.|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999865

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.24  E-value=0.00017  Score=57.12  Aligned_cols=26  Identities=27%  Similarity=0.276  Sum_probs=22.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ..-.++|+|++|||||||++.|++..
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            44588999999999999999999863

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.23  E-value=0.00019  Score=55.59  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...++++|++|||||||++.|.+.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            347899999999999999999875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.19  E-value=0.00017  Score=56.85  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=21.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.++|+|++|||||||++.|.+.
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            347899999999999999999986

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.18  E-value=0.00018  Score=56.16  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=22.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+|+|++|||||||++.|.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4458999999999999999999876

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.16  E-value=0.00024  Score=56.86  Aligned_cols=25  Identities=32%  Similarity=0.275  Sum_probs=22.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|||||||++.|.|-.
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3478999999999999999999863

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.15  E-value=0.0002  Score=56.89  Aligned_cols=24  Identities=29%  Similarity=0.274  Sum_probs=21.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999999863

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.12  E-value=0.00024  Score=54.36  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...++++|++|||||||++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            347899999999999999999876

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.10  E-value=0.00025  Score=53.19  Aligned_cols=23  Identities=13%  Similarity=0.289  Sum_probs=21.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++++|+.|+|||||++.|++.
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            37899999999999999999986

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.10  E-value=0.00065  Score=53.11  Aligned_cols=66  Identities=6%  Similarity=0.010  Sum_probs=40.9

Q ss_pred             CCeEEEEeCCCC-CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc-CCcEEEEEecCC
Q 026538          137 GTKLCLVDLPGY-GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTD  214 (237)
Q Consensus       137 ~~~~~liDTpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-~~piilv~NK~D  214 (237)
                      .+.+.++|||+. ...   .         ....+.   .+|.+++++.....--.....+++.+... +.++.+|+|++|
T Consensus        67 ~yD~viiD~p~~~~~~---~---------~~~~l~---~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~  131 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE---D---------LEALAD---GCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIP  131 (209)
T ss_dssp             GCSEEEEEEECCCSSS---H---------HHHHHH---TSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBC
T ss_pred             cCCEEEEeCCCCcCcH---H---------HHHHHH---HCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecC
Confidence            467999999985 431   1         111111   28999999986532112223455555552 678899999999


Q ss_pred             CCC
Q 026538          215 TVF  217 (237)
Q Consensus       215 l~~  217 (237)
                      ...
T Consensus       132 ~~~  134 (209)
T 3cwq_A          132 PYP  134 (209)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.09  E-value=0.00034  Score=54.63  Aligned_cols=25  Identities=28%  Similarity=0.295  Sum_probs=22.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ...|+|+|++|||||||++.|.+..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            4578999999999999999999764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.09  E-value=0.00026  Score=56.87  Aligned_cols=23  Identities=22%  Similarity=0.305  Sum_probs=21.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++++|++|||||||++.|.|-
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999999986

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.07  E-value=0.00026  Score=58.01  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            478999999999999999999863

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.06  E-value=0.00027  Score=57.26  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|+|-.
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999999863

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.05  E-value=0.00034  Score=55.98  Aligned_cols=24  Identities=38%  Similarity=0.526  Sum_probs=21.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|+|..
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            488999999999999999999874

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.05  E-value=0.00028  Score=56.71  Aligned_cols=24  Identities=46%  Similarity=0.643  Sum_probs=21.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999999863

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.05  E-value=0.00028  Score=56.84  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|+|-.
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999999863

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.05  E-value=0.00028  Score=57.56  Aligned_cols=24  Identities=33%  Similarity=0.457  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            478999999999999999999863

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.04  E-value=0.00027  Score=55.74  Aligned_cols=23  Identities=22%  Similarity=0.579  Sum_probs=21.2

Q ss_pred             EEEEecCCCCchhhHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .++++|++|||||||++.|+|..
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999999863

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.04  E-value=0.00029  Score=53.31  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=19.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++++|++|||||||++.+++.
T Consensus        10 ei~~l~G~nGsGKSTl~~~~~~~   32 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKHFKP   32 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCG
T ss_pred             EEEEEECCCCCCHHHHHHHHccC
Confidence            36899999999999999976543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.04  E-value=0.0003  Score=56.03  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|+|..
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999999873

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.03  E-value=0.00027  Score=55.43  Aligned_cols=22  Identities=23%  Similarity=0.128  Sum_probs=20.7

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++++|++|||||||++.|+|.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999999986

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.02  E-value=0.00031  Score=56.34  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|+|-.
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999999863

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.02  E-value=0.00037  Score=56.65  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|+|-.
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999999863

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.01  E-value=0.00033  Score=54.56  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=21.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|++|||||||++.|.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999999885

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.00  E-value=0.00034  Score=56.44  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++++|++|||||||++.|+|-
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999999995

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.99  E-value=0.00034  Score=56.49  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999999873

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.99  E-value=0.00034  Score=56.86  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=21.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++++|++|||||||++.|++.
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            37899999999999999999875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.99  E-value=0.002  Score=53.56  Aligned_cols=48  Identities=15%  Similarity=0.203  Sum_probs=34.2

Q ss_pred             ccccEEEEEEeCCCCCChhH--HHHHHHHHhcCCcEEEEEecCCCCChHH
Q 026538          173 VSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~~~piilv~NK~Dl~~~~~  220 (237)
                      ..+|.+++|+|+..+.....  ..++......++|.++|+||+|+.++.+
T Consensus        85 anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~  134 (307)
T 1t9h_A           85 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQD  134 (307)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHH
T ss_pred             HhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhh
Confidence            34899999999986544433  1233333456899999999999987654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.98  E-value=0.00043  Score=56.33  Aligned_cols=25  Identities=28%  Similarity=0.259  Sum_probs=22.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|||||||++.|.|-.
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            3478999999999999999999863

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.98  E-value=0.00046  Score=53.37  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|++||||||+++.|.+.
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            347899999999999999999876

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.97  E-value=0.00036  Score=57.29  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|+|..
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999999863

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.97  E-value=0.00046  Score=52.59  Aligned_cols=24  Identities=38%  Similarity=0.639  Sum_probs=21.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+.++++|++|+|||||++.|++.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            568999999999999999999875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.95  E-value=0.00047  Score=55.98  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=22.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|||||||++.|+|-.
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccC
Confidence            3488999999999999999999863

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.012  Score=51.27  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-|++.|+||+|||+|..++.+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            47899999999999999999987

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.95  E-value=0.00047  Score=55.86  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|+|-.
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999999863

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.94  E-value=0.00049  Score=56.24  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=22.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++|+|++|||||||++.|+|-.
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478999999999999999999863

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.94  E-value=0.00047  Score=57.27  Aligned_cols=25  Identities=36%  Similarity=0.454  Sum_probs=21.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..-.++|+|++|+|||||++.|++-
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhh
Confidence            3448999999999999999999875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.94  E-value=0.0004  Score=56.19  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999999873

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.93  E-value=0.0005  Score=53.24  Aligned_cols=24  Identities=17%  Similarity=0.371  Sum_probs=21.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|++|||||||++.|.+.
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999999764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.93  E-value=0.00052  Score=55.95  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=21.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++++|++|||||||++.|+|-
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999996

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.92  E-value=0.00046  Score=51.84  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999875

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.90  E-value=0.0025  Score=52.40  Aligned_cols=121  Identities=13%  Similarity=0.131  Sum_probs=56.7

Q ss_pred             CCCCEEEEecCC-CCchhhHHHHHhcccceeeccCCC-----CceEEEEEEEc---------------------------
Q 026538           90 PDLPEIAFAGRS-NVGKSSMLNALTRQWGVVRTSDKP-----GLTQTINFFKL---------------------------  136 (237)
Q Consensus        90 ~~~~~i~lvG~~-~~GKSTLin~L~~~~~~~~~~~~~-----g~t~~~~~~~~---------------------------  136 (237)
                      ...|+++++|+. ..=..+|+..|........+...+     |.-..+.+...                           
T Consensus        99 ~~~pr~amFGpGlE~~~~~lv~~lm~~~e~~p~~g~~~r~~~giGsGv~~~~~~~~~fni~tLYs~tr~ER~r~~~e~~~  178 (312)
T 3l2o_B           99 QNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTS  178 (312)
T ss_dssp             CCCCEEEEECTHHHHSSSCHHHHHTTCGGGCCEECCSTTTCSSSCCCEEEEETTTEEEEEEECSCCCC------------
T ss_pred             CCCceEEEECCCcccccHHHHHHHHcCCCccccccccCCCcCccccceEEEECCceeEEEEEeccccHHHHhhhhhhhhh
Confidence            566899999971 112347888887764333333222     21111111111                           


Q ss_pred             -CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHH----HHHHHH----hcCCcEE
Q 026538          137 -GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE----LISLME----RSQTKYQ  207 (237)
Q Consensus       137 -~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~----~~~~l~----~~~~pii  207 (237)
                       ..++....+||-.+...+..++..|...    +..   .|++|||||+++.-......    +...+.    -.+.|++
T Consensus       179 ~~~k~f~~~~~~~~~~GGQ~~lRplWr~Y----y~~---tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLL  251 (312)
T 3l2o_B          179 AVNKMFSRHNEGDDQQGSRYSVIPQIQKV----CEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL  251 (312)
T ss_dssp             ------------------CCCCCHHHHHH----HHH---CSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEE
T ss_pred             hhhhhccccCCCCcCCCCHHHHHHHHHHH----hcC---CCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEE
Confidence             1223344455422212234455555544    433   99999999987642211211    112221    1478999


Q ss_pred             EEEec-CCCCC
Q 026538          208 VVLTK-TDTVF  217 (237)
Q Consensus       208 lv~NK-~Dl~~  217 (237)
                      |..|| -|+..
T Consensus       252 VfANKkQDlp~  262 (312)
T 3l2o_B          252 VLSCISQGDVK  262 (312)
T ss_dssp             EEEEESSTTSC
T ss_pred             EEeCCcccccC
Confidence            99997 47754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.89  E-value=0.00058  Score=55.63  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999999863

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.87  E-value=0.00081  Score=57.41  Aligned_cols=53  Identities=11%  Similarity=-0.053  Sum_probs=34.2

Q ss_pred             HHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      +..++..+...   ++++++|+|+++........+.+.+.  +.|+++|+||+|+.+.
T Consensus        61 f~~~L~~~~~~---~~lil~VvD~~d~~~s~~~~l~~~l~--~~piilV~NK~DLl~~  113 (369)
T 3ec1_A           61 FLSMLHRIGES---KALVVNIVDIFDFNGSFIPGLPRFAA--DNPILLVGNKADLLPR  113 (369)
T ss_dssp             HHHHHHHHHHH---CCEEEEEEETTCSGGGCCSSHHHHCT--TSCEEEEEECGGGSCT
T ss_pred             HHHHHHHhhcc---CcEEEEEEECCCCCCchhhHHHHHhC--CCCEEEEEEChhcCCC
Confidence            34444444433   78999999988643222222223322  6899999999999865

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.86  E-value=0.00053  Score=53.25  Aligned_cols=25  Identities=24%  Similarity=0.594  Sum_probs=21.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+|+|++||||||+.+.|...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3457899999999999999999865

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.86  E-value=0.00052  Score=55.86  Aligned_cols=23  Identities=22%  Similarity=0.476  Sum_probs=21.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++++|++|||||||++.|+|.
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999987

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.85  E-value=0.00047  Score=53.26  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=20.4

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++++|++|+|||||++.|++.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            6899999999999999999886

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.85  E-value=0.00054  Score=52.37  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++++|++|||||||++.|.+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            5789999999999999999863

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.84  E-value=0.00029  Score=53.53  Aligned_cols=23  Identities=17%  Similarity=0.400  Sum_probs=21.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..++|+|++|||||||++.|.+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.84  E-value=0.00067  Score=51.13  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+++|++||||||+.+.|.+.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh
Confidence            347899999999999999998753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.84  E-value=0.0005  Score=54.44  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=16.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHh-cc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALT-RQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~-~~  115 (237)
                      ...++|+|++|||||||++.|. +.
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC--
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            4578999999999999999999 65

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.83  E-value=0.00088  Score=57.17  Aligned_cols=53  Identities=13%  Similarity=0.056  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHh--cCCcEEEEEecCCCCChH
Q 026538          160 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~Dl~~~~  219 (237)
                      .+..++..+...   ++++++|+|+.+.    ...+...+..  .++|+++|+||+|+.+..
T Consensus        58 ~f~~~l~~i~~~---~~~il~VvD~~d~----~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~  112 (368)
T 3h2y_A           58 DFLRILNGIGKS---DALVVKIVDIFDF----NGSWLPGLHRFVGNNKVLLVGNKADLIPKS  112 (368)
T ss_dssp             HHHHHHHHHHHS---CCEEEEEEETTSH----HHHCCTTHHHHSSSSCEEEEEECGGGSCTT
T ss_pred             HHHHHHHHHhcc---CcEEEEEEECCCC----cccHHHHHHHHhCCCcEEEEEEChhcCCcc
Confidence            345555555554   7899999998752    1222222222  268999999999997643

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.81  E-value=0.00049  Score=57.27  Aligned_cols=25  Identities=36%  Similarity=0.509  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++|+|++|||||||++.|++-.
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCchHHHHHHHHHcCC
Confidence            4489999999999999999999863

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.78  E-value=0.00063  Score=57.82  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            378999999999999999999863

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.77  E-value=0.00072  Score=52.32  Aligned_cols=24  Identities=33%  Similarity=0.257  Sum_probs=21.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+++|++||||||+.+.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999876

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.77  E-value=0.00078  Score=55.58  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|||||||++.|+|..
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3478999999999999999999874

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.76  E-value=0.00069  Score=56.49  Aligned_cols=25  Identities=32%  Similarity=0.238  Sum_probs=22.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+|+|++|||||||++.|.+.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhh
Confidence            4458899999999999999999885

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.76  E-value=0.00082  Score=53.77  Aligned_cols=21  Identities=14%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             CEEEEecCCCCchhhHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~  113 (237)
                      ..|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999999

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.73  E-value=0.00069  Score=57.54  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++|+|++|||||||+++|++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999999875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.73  E-value=0.00073  Score=57.35  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999999863

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.71  E-value=0.00084  Score=50.15  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|++.|.+||||||+.+.|...
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999765

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.0078  Score=51.78  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=21.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-|++.|+||+|||+|..++.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            36899999999999999999987

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.71  E-value=0.00084  Score=50.06  Aligned_cols=20  Identities=30%  Similarity=0.381  Sum_probs=18.7

Q ss_pred             CEEEEecCCCCchhhHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNAL  112 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L  112 (237)
                      +.|+++|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.71  E-value=0.00068  Score=56.98  Aligned_cols=22  Identities=14%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++++|++|||||||++.|++.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999986

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.71  E-value=0.0017  Score=53.85  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.++++|++||||||+++.|.+.
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            447899999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.71  E-value=0.00059  Score=57.02  Aligned_cols=24  Identities=17%  Similarity=0.368  Sum_probs=21.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+.++|+|++|||||||+|.|++.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            568899999999999999999975

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.70  E-value=0.0025  Score=52.43  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=20.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+++|++||||||+.+.|...
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346788999999999999999764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.70  E-value=0.0008  Score=52.80  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=20.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++|+|++|||||||++.|++.
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999999874

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.69  E-value=0.0008  Score=57.60  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCC
Confidence            378999999999999999999864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.69  E-value=0.00068  Score=57.68  Aligned_cols=24  Identities=29%  Similarity=0.530  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++|+|++|||||||+++|++..
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            389999999999999999999863

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.68  E-value=0.00093  Score=52.47  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=21.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|+++|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.67  E-value=0.00086  Score=57.30  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=21.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCC
Confidence            378999999999999999999863

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.66  E-value=0.001  Score=56.55  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=22.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|||||||++.|.|-.
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcCC
Confidence            3478999999999999999999863

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.66  E-value=0.00092  Score=50.67  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=21.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...++++|++|+|||||++++.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999876

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.66  E-value=0.00094  Score=53.44  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=21.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|++|||||||++.|.+.
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999874

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.65  E-value=0.00088  Score=57.21  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=21.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            378999999999999999999863

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.65  E-value=0.0011  Score=56.34  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCC
Confidence            378999999999999999999863

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.64  E-value=0.0011  Score=51.19  Aligned_cols=24  Identities=25%  Similarity=0.456  Sum_probs=21.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+++|++||||||+.+.|.+.
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            458999999999999999999854

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.63  E-value=0.0011  Score=56.32  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            378999999999999999999863

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.62  E-value=0.0011  Score=51.28  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .+|+|+|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999987

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.62  E-value=0.0011  Score=49.09  Aligned_cols=24  Identities=33%  Similarity=0.288  Sum_probs=21.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...++++|++|+|||||++++.+.
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999999986

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.60  E-value=0.00051  Score=60.51  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=21.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+++|.+|+||||+.+.|...
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            358899999999999999999865

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.60  E-value=0.0012  Score=50.95  Aligned_cols=24  Identities=33%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|.+||||||+.+.|.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.012  Score=51.11  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-|++.|+||+|||+|..++.+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999987

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.58  E-value=0.00088  Score=56.96  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-+++|+|++|||||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3489999999999999999999864

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.57  E-value=0.028  Score=45.28  Aligned_cols=24  Identities=17%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...+++.|++|+|||+|..++...
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            357899999999999999999875

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.57  E-value=0.00075  Score=57.14  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCccHHHHHHHHHcCC
Confidence            378999999999999999999863

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.57  E-value=0.001  Score=56.86  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++|+|++|||||||++.|++.
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            37899999999999999999874

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.57  E-value=0.046  Score=43.43  Aligned_cols=24  Identities=17%  Similarity=0.272  Sum_probs=21.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...+++.|++|+|||++..++...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999875

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.56  E-value=0.013  Score=52.18  Aligned_cols=24  Identities=13%  Similarity=0.356  Sum_probs=21.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...++|.|++|+||||++.++...
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~  100 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQE  100 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            358899999999999999999876

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.55  E-value=0.0064  Score=50.01  Aligned_cols=23  Identities=22%  Similarity=0.183  Sum_probs=19.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-+++.|+||+|||+|..++...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35677799999999999999876

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.55  E-value=0.0011  Score=56.93  Aligned_cols=25  Identities=32%  Similarity=0.522  Sum_probs=22.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|||||||++.|.|-.
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            3478999999999999999999863

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.55  E-value=0.0017  Score=49.55  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=22.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+++|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999765

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.54  E-value=0.0024  Score=54.25  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.++++|++||||||+++.|.+.
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhh
Confidence            347899999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.52  E-value=0.0015  Score=49.47  Aligned_cols=24  Identities=13%  Similarity=0.289  Sum_probs=21.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+.++++|.+|+|||||++.|+..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999998853

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.51  E-value=0.0016  Score=50.43  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=21.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+++|.+|||||||++.|.+.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999998864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.51  E-value=0.0015  Score=50.74  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+++|.+||||||+.+.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            457899999999999999999886

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.50  E-value=0.0011  Score=58.97  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++|+|++|||||||+++|++.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999975

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.49  E-value=0.0012  Score=57.20  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++|+|++|||||||+++|++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            7899999999999999999975

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.49  E-value=0.0017  Score=52.34  Aligned_cols=22  Identities=36%  Similarity=0.578  Sum_probs=20.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHh
Q 026538           92 LPEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~  113 (237)
                      ...|+|+|++||||||+++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999999998

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.48  E-value=0.0015  Score=54.33  Aligned_cols=25  Identities=32%  Similarity=0.255  Sum_probs=21.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+|+|++|||||||++.|.+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.47  E-value=0.0014  Score=50.82  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|+++|++||||||+.+.|.+.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHC
Confidence            36899999999999999999763

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.0013  Score=57.73  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=22.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....++|+|++|||||||++.|+|-
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCc
Confidence            4568999999999999999999985

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.46  E-value=0.0018  Score=48.80  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|++.|.+||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999875

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.46  E-value=0.014  Score=51.00  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=21.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-|++.|+||+|||+|..++.+.
T Consensus       244 rGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          244 KGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             SEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CceEeeCCCCCcHHHHHHHHHhc
Confidence            47899999999999999999987

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.43  E-value=0.0016  Score=48.93  Aligned_cols=21  Identities=24%  Similarity=0.219  Sum_probs=19.6

Q ss_pred             EEEEecCCCCchhhHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            688999999999999999987

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.43  E-value=0.0016  Score=49.97  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|+|.|.+||||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.42  E-value=0.0026  Score=51.95  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=20.1

Q ss_pred             EEEecCCCCchhhHHHHHhcc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ++++|++|+|||||++++.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999986

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.41  E-value=0.001  Score=56.45  Aligned_cols=24  Identities=17%  Similarity=0.306  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999999863

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.03  Score=48.54  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-|++.|+||+|||+|..++.+.
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCceECCCCchHHHHHHHHHHH
Confidence            47999999999999999999987

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.40  E-value=0.0019  Score=54.02  Aligned_cols=25  Identities=32%  Similarity=0.248  Sum_probs=21.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+|+|++|||||||++.|.+.
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4457899999999999999988654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.39  E-value=0.002  Score=48.86  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+.|+++|.+||||||+.+.|...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999754

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.39  E-value=0.0018  Score=51.33  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=21.9

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+|.|.+|||||||++.|.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3457899999999999999999875

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.37  E-value=0.0017  Score=49.33  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=20.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|+|.|.+||||||+.+.|...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999764

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.36  E-value=0.0023  Score=48.67  Aligned_cols=25  Identities=16%  Similarity=0.197  Sum_probs=21.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+++|.+||||||+.+.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3457899999999999999998765

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.35  E-value=0.018  Score=49.86  Aligned_cols=24  Identities=17%  Similarity=0.199  Sum_probs=21.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+++|.+||||||+.+.|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            456788999999999999999875

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.34  E-value=0.0022  Score=48.69  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|+|.|.+||||||+.+.|...
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998753

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.0057  Score=53.23  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=21.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-|++.|+||+|||+|..++.+.
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHHH
Confidence            47999999999999999999987

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.33  E-value=0.0021  Score=48.94  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|+++|.+||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.33  E-value=0.0022  Score=52.91  Aligned_cols=25  Identities=24%  Similarity=0.126  Sum_probs=21.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+|+|.+|||||||.+.|.+.
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3468899999999999999988765

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.33  E-value=0.0019  Score=48.85  Aligned_cols=21  Identities=29%  Similarity=0.306  Sum_probs=19.1

Q ss_pred             EEEEecCCCCchhhHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ..+|+|++|+|||||+.+|..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.26  E-value=0.002  Score=51.67  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=20.4

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -++++|++|+|||||++++.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999876

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.033  Score=46.38  Aligned_cols=25  Identities=8%  Similarity=0.090  Sum_probs=22.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+.+.|.|+||+|||++++.++..
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.25  E-value=0.0025  Score=48.22  Aligned_cols=24  Identities=33%  Similarity=0.645  Sum_probs=21.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+.|+++|.+|+||||+.+.|...
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHH
Confidence            457999999999999999999854

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.21  E-value=0.031  Score=46.97  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=21.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...++|.|++|+|||||++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999865

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.20  E-value=0.0038  Score=50.18  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+++|.+||||||+.+.|...
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3457899999999999999999875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.20  E-value=0.0031  Score=48.83  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=21.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|.|.+||||||+.+.|...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999753

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.20  E-value=0.0033  Score=48.36  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=21.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.19  E-value=0.0023  Score=57.34  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|||||||++.|.|..
T Consensus        47 Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           47 GMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3488999999999999999999863

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.17  E-value=0.0027  Score=48.09  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ..|+++|.+||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999975

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.17  E-value=0.0032  Score=48.00  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=20.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|++.|.+||||||+.+.|...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999998753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.17  E-value=0.0028  Score=49.42  Aligned_cols=22  Identities=14%  Similarity=0.330  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +|+|+|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.16  E-value=0.0038  Score=48.05  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=21.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+|.|.+||||||+.+.|...
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4457899999999999999998754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.15  E-value=0.0029  Score=49.59  Aligned_cols=24  Identities=13%  Similarity=0.270  Sum_probs=21.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|.+||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.15  E-value=0.0045  Score=51.49  Aligned_cols=74  Identities=20%  Similarity=0.165  Sum_probs=41.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeecc-C-------CCCceEEEE-EEEcCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-D-------KPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~-~-------~~g~t~~~~-~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~  163 (237)
                      +.|+|+|++|||||||...|........++ +       ..-+|.... ....+.+..++|...+.+..+.....+....
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~   83 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATP   83 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHH
Confidence            468899999999999999998764322211 1       111121111 1113667888888777665444433333333


Q ss_pred             HHH
Q 026538          164 LVK  166 (237)
Q Consensus       164 ~~~  166 (237)
                      .+.
T Consensus        84 ~i~   86 (322)
T 3exa_A           84 LIT   86 (322)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.15  E-value=0.0029  Score=49.22  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +|+|+|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.13  E-value=0.0025  Score=56.17  Aligned_cols=23  Identities=17%  Similarity=0.341  Sum_probs=20.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++|+|++|||||||++.|.|-
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcC
Confidence            37899999999999999999874

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.12  E-value=0.0027  Score=47.81  Aligned_cols=23  Identities=35%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+|+|+|.+||||||+...|...
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            36999999999999999999765

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.11  E-value=0.0032  Score=48.28  Aligned_cols=24  Identities=25%  Similarity=0.228  Sum_probs=21.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|.+||||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            457899999999999999999865

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.09  E-value=0.0043  Score=47.77  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=20.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|.+||||||+.+.|...
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            348999999999999999998754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.09  E-value=0.0036  Score=48.95  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=21.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999998764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.09  E-value=0.0038  Score=48.25  Aligned_cols=24  Identities=29%  Similarity=0.267  Sum_probs=21.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|.|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            458999999999999999999754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.08  E-value=0.0034  Score=49.41  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|.|.+||||||+.+.|...
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.08  E-value=0.0032  Score=48.56  Aligned_cols=23  Identities=39%  Similarity=0.368  Sum_probs=20.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|+|.|.+||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            47899999999999999999764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.07  E-value=0.0028  Score=56.78  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|+|..
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            378999999999999999999863

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.07  E-value=0.0031  Score=49.29  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++++|++|+|||||++.+++.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37889999999999999998854

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.07  E-value=0.0033  Score=47.49  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+++|.+||||||+.+.|.+.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999999764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.06  E-value=0.0033  Score=56.85  Aligned_cols=25  Identities=36%  Similarity=0.553  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +-.++++|++|||||||++.|.|-.
T Consensus       369 G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          369 GKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhcc
Confidence            3489999999999999999999863

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.06  E-value=0.0073  Score=48.33  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..++++|++|+|||||++++.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999999876

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.04  E-value=0.0037  Score=51.95  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=20.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +.|+|+|++|||||||...|....
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCccCHHHHHHHHHHhC
Confidence            467889999999999999998763

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.04  E-value=0.038  Score=48.25  Aligned_cols=23  Identities=17%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +.++|.|++|+|||||.+.+...
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            58999999999999999999876

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.03  E-value=0.006  Score=51.25  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +.|+|+|++|||||||...|....
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            478999999999999999999764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.03  E-value=0.0029  Score=51.44  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=20.4

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -++++|++|+|||||++++.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3999999999999999999876

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.03  E-value=0.0029  Score=53.04  Aligned_cols=23  Identities=17%  Similarity=0.494  Sum_probs=21.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999876

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.02  E-value=0.0016  Score=50.49  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|+|.|.+||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.01  E-value=0.0036  Score=56.60  Aligned_cols=25  Identities=40%  Similarity=0.581  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +-.++++|++|+|||||++.|.|-.
T Consensus       369 G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          369 GKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3489999999999999999999863

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.00  E-value=0.0035  Score=50.52  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=20.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|+|+|.+||||||+.+.|.+.
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            48999999999999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.00  E-value=0.0032  Score=57.21  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|+|||||++.|.|..
T Consensus       103 Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          103 GQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            3488999999999999999999863

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.99  E-value=0.0049  Score=53.03  Aligned_cols=65  Identities=20%  Similarity=0.266  Sum_probs=37.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeecc-CC-------CCceEEEEE-EEcCCeEEEEeCCCCCCcccchHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DK-------PGLTQTINF-FKLGTKLCLVDLPGYGFAYAKEEV  157 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~-~~-------~g~t~~~~~-~~~~~~~~liDTpG~~~~~~~~~~  157 (237)
                      +.|+|+|++|+|||||...|........++ +.       .-+|..... ...+.+..++|...+.+..+....
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F   76 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRF   76 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHH
Confidence            468899999999999999998653222222 11       112222111 112567788887776654444433

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.99  E-value=0.0043  Score=46.55  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=20.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+++.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998865

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.98  E-value=0.0026  Score=53.16  Aligned_cols=24  Identities=29%  Similarity=0.482  Sum_probs=21.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ..|+|+|++|||||||...|....
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            378999999999999999998763

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.97  E-value=0.0036  Score=47.39  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +.|+++|.+||||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.97  E-value=0.0036  Score=56.77  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=22.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|||||||++.|+|-.
T Consensus       381 G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          381 GQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Confidence            4489999999999999999999864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.96  E-value=0.0034  Score=53.06  Aligned_cols=25  Identities=28%  Similarity=0.302  Sum_probs=22.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-+++++|++|+|||||++.|++..
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3489999999999999999999873

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.96  E-value=0.0032  Score=51.65  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++|+|++|+|||||++.|++.
T Consensus        36 ~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           36 EVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            37899999999999999998865

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.96  E-value=0.0038  Score=50.39  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=20.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+.|+++|.+||||||+.+.|...
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHH
Confidence            457899999999999999998753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.93  E-value=0.004  Score=47.33  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=20.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|++.|.+||||||+.+.|...
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.92  E-value=0.0035  Score=56.94  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=22.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ..-.++++|++|+|||||++.|.|..
T Consensus       116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          116 DGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            33488999999999999999999863

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.92  E-value=0.004  Score=45.94  Aligned_cols=20  Identities=35%  Similarity=0.484  Sum_probs=18.1

Q ss_pred             EEEEecCCCCchhhHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~  113 (237)
                      ..+|+|++|+||||++.+|.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            56899999999999999975

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.92  E-value=0.15  Score=42.24  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=21.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|++.|++|+|||+|..++...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            57899999999999999999876

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.92  E-value=0.0032  Score=56.90  Aligned_cols=25  Identities=36%  Similarity=0.569  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|||||||++.|.|..
T Consensus       367 G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          367 GETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            4489999999999999999999864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.91  E-value=0.0051  Score=48.46  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ..|+|+|+|||||+|....|....
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            356788999999999999998764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.91  E-value=0.0045  Score=47.28  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|++.|.+||||||+.+.|...
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.91  E-value=0.0037  Score=48.79  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=21.0

Q ss_pred             EEEEecCCCCchhhHHHHHhcccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWG  117 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~  117 (237)
                      +|+|+|+|||||+|....|....+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            688999999999999999987643

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.90  E-value=0.004  Score=50.12  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|+|+|++|||||||.+.|...
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            5789999999999999999765

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.90  E-value=0.0055  Score=46.41  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=20.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|++.|.+||||||+.+.|...
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998753

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.89  E-value=0.0037  Score=53.20  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=18.2

Q ss_pred             EEEEecCCCCchhhHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~  113 (237)
                      ..+|+|++|+|||||+++++
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            46799999999999999987

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.88  E-value=0.0047  Score=45.92  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +|+|.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998763

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.87  E-value=0.0046  Score=48.18  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +|+|.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.87  E-value=0.0047  Score=48.21  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999976

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.87  E-value=0.0045  Score=46.21  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|++.|.+||||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.87  E-value=0.06  Score=45.21  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=18.3

Q ss_pred             EEEEecCCCCchhhHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .++|.|+||+|||||+..++.
T Consensus        48 LiiIaG~pG~GKTt~al~ia~   68 (338)
T 4a1f_A           48 LVIIGARPSMGKTSLMMNMVL   68 (338)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            788999999999999877654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.86  E-value=0.0039  Score=55.81  Aligned_cols=24  Identities=21%  Similarity=0.374  Sum_probs=21.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++|+|++|||||||++.|+|..
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999999863

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.82  E-value=0.005  Score=46.75  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=19.3

Q ss_pred             EEEEecCCCCchhhHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999876

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.82  E-value=0.0042  Score=54.21  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-+++|+|++|||||||++.|.+..
T Consensus       157 Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          157 GQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccc
Confidence            3489999999999999999999863

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.81  E-value=0.0042  Score=56.27  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|||||||++.|.+..
T Consensus       369 Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          369 GSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            4489999999999999999999863

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.79  E-value=0.0043  Score=46.76  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=16.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|++.|.+||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999998754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.79  E-value=0.0061  Score=47.26  Aligned_cols=23  Identities=13%  Similarity=-0.038  Sum_probs=20.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .-.++++|++|+|||||+..+++
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999999986

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.78  E-value=0.0056  Score=52.33  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=21.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...++++|++|+|||||++.|.+.
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            348899999999999999999875

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.78  E-value=0.0056  Score=48.91  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=21.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|.|.+||||||+.+.|...
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.78  E-value=0.0046  Score=55.40  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++|+|++|||||||++.|+|..
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999999873

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.75  E-value=0.33  Score=39.88  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=18.0

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+++.|++|+|||+++.++...
T Consensus        50 ~~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHH
T ss_pred             EEEeeCcCCCCHHHHHHHHHHH
Confidence            3455677999999999999866

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.75  E-value=0.0054  Score=47.68  Aligned_cols=24  Identities=33%  Similarity=0.302  Sum_probs=20.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+++|.+||||||+.+.|.+.
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999998764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.72  E-value=0.0067  Score=47.51  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...+++.|++|+|||||+..+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999998765

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.71  E-value=0.0049  Score=48.19  Aligned_cols=24  Identities=13%  Similarity=0.304  Sum_probs=21.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|.+||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.70  E-value=0.0051  Score=55.89  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|+|||||++.|.|..
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999999863

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.67  E-value=0.0057  Score=48.24  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++++|++|+|||||+..|++.
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            47899999999999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.66  E-value=0.0075  Score=47.67  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=21.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|.+||||||+.+.|...
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.62  E-value=0.0067  Score=47.69  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=19.7

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|+|.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.61  E-value=0.0065  Score=48.67  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=21.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+|.|.+||||||+.+.|...
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988653

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.60  E-value=0.00099  Score=52.95  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=18.8

Q ss_pred             EEEecCCCCchhhHHHHHhcc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ++|+|++|||||||+++|.+.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            468899999999999999875

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.60  E-value=0.014  Score=49.29  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|+|.|++|+|||+|..++...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999876

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.60  E-value=0.0054  Score=45.95  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=21.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...+++.|++|+|||+|+..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999998765

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.59  E-value=0.0072  Score=48.13  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=20.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|.|++||||||+.+.|...
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999998743

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.58  E-value=0.0065  Score=50.91  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+.+++.|++|+||||+++.+.+.
T Consensus        36 ~~~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           36 LPHLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999999873

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.58  E-value=0.007  Score=47.94  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=21.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+|.|.+||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3457899999999999999998765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.57  E-value=0.036  Score=52.38  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=20.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..++++|++|+|||+++..+...
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999999876

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.55  E-value=0.047  Score=46.54  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=21.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|.|++|+|||+|+.++...
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999999765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.0063  Score=55.28  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=21.1

Q ss_pred             EEEEecCCCCchhhHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .++++|++|+|||||++.|.|..
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57999999999999999999874

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.54  E-value=0.0074  Score=46.35  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=21.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+++.|++|+|||+|+.++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            58899999999999999999875

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.53  E-value=0.0092  Score=47.17  Aligned_cols=40  Identities=10%  Similarity=-0.041  Sum_probs=29.5

Q ss_pred             EEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       177 ~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      .-++++|..+-+.....+.+..+...++|+++++-..|-.
T Consensus        90 ~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~  129 (223)
T 2b8t_A           90 TKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK  129 (223)
T ss_dssp             CCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred             CCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence            4577888766565555566777666789999999988864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.52  E-value=0.035  Score=47.02  Aligned_cols=46  Identities=13%  Similarity=0.084  Sum_probs=28.5

Q ss_pred             cccEEEEEEeCCCCC-ChhH-HHHHHHHHhcCCcEEEEEecCCCCChHH
Q 026538          174 SLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       174 ~~d~v~~vvd~~~~~-~~~~-~~~~~~l~~~~~piilv~NK~Dl~~~~~  220 (237)
                      .+|.+++| |+..+. .... ..++......++|.++|+||+|+.++.+
T Consensus       130 nvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~  177 (358)
T 2rcn_A          130 NIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEG  177 (358)
T ss_dssp             CCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHH
T ss_pred             cCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchh
Confidence            37888866 443332 2221 1222223446899999999999998754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.46  E-value=0.0083  Score=44.68  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..-+|++.|.+||||||+.+.|...
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.43  E-value=0.0066  Score=60.01  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +-+|+++|++|||||||++.|++-.
T Consensus      1105 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1105 GQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             TCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCc
Confidence            3489999999999999999999864

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.42  E-value=0.01  Score=47.04  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ....|+|+|.+||||||+.+.|.+
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            445899999999999999999886

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.41  E-value=0.0097  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...+++.|++|+|||+|++++...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            347999999999999999999875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.39  E-value=0.009  Score=45.92  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +.|+|.|.+||||||+.+.|...
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            37899999999999999998764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.38  E-value=0.0092  Score=48.78  Aligned_cols=23  Identities=35%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ...|+|.|.+||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999873

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.33  E-value=0.067  Score=50.08  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..-|++.|+||+|||+|.+++.+.
T Consensus       238 p~GILL~GPPGTGKT~LAraiA~e  261 (806)
T 3cf2_A          238 PRGILLYGPPGTGKTLIARAVANE  261 (806)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999987

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.33  E-value=0.055  Score=50.29  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...++++|++|+|||+++..|...
T Consensus       207 ~~~vlL~G~~GtGKT~la~~la~~  230 (758)
T 1r6b_X          207 KNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHH
Confidence            457899999999999999999865

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.32  E-value=0.0076  Score=47.05  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.4

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+++.|+||+||||++.+|...
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999998888754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.30  E-value=0.0097  Score=49.79  Aligned_cols=23  Identities=39%  Similarity=0.693  Sum_probs=20.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +.+++.|++|+||||+++++.+.
T Consensus        47 ~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           47 PHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999875

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.29  E-value=0.0089  Score=48.59  Aligned_cols=23  Identities=26%  Similarity=0.209  Sum_probs=20.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++|+|++|+|||||+..+++.
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            47899999999999999988863

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.27  E-value=0.011  Score=45.38  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+++.|++|+|||+|+..+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999998764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.24  E-value=0.011  Score=45.87  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=21.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|++|+|||||...|...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            347899999999999999999876

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.23  E-value=0.0097  Score=50.26  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=21.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +.++|.|++|+|||||++.+.+.
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999875

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.21  E-value=0.0098  Score=46.16  Aligned_cols=20  Identities=35%  Similarity=0.484  Sum_probs=17.9

Q ss_pred             EEEEecCCCCchhhHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~  113 (237)
                      ..+|+|++|+||||++.+|.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            56889999999999999875

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.20  E-value=0.021  Score=46.73  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=20.0

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++++|++|+|||++..++.+.
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHH
Confidence            6899999999999999998864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.20  E-value=0.012  Score=47.99  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=21.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...+++.|++|+|||+|++++.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357899999999999999999876

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.17  E-value=0.0062  Score=58.10  Aligned_cols=23  Identities=39%  Similarity=0.635  Sum_probs=21.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++|+|++|+|||||++.|+|.
T Consensus       700 eivaIiGpNGSGKSTLLklLaGl  722 (986)
T 2iw3_A          700 SRIAVIGPNGAGKSTLINVLTGE  722 (986)
T ss_dssp             CEEEECSCCCHHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            48899999999999999999986

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.15  E-value=0.014  Score=47.92  Aligned_cols=25  Identities=16%  Similarity=0.343  Sum_probs=21.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....++|.|++|+|||++..++...
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4457999999999999999887765

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.11  E-value=0.012  Score=45.30  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=21.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....|+++|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999998754

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=95.06  E-value=0.0043  Score=53.39  Aligned_cols=21  Identities=38%  Similarity=0.537  Sum_probs=19.0

Q ss_pred             EEEEecCCCCchhhHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .++|+|++|+|||||+++|.+
T Consensus        62 ~~~lvG~NGaGKStLl~aI~~   82 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALGL   82 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            889999999999999988843

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.05  E-value=0.0075  Score=54.14  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=21.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|+|.+|||||||++.|.+.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHh
Confidence            457899999999999999999876

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.03  E-value=0.016  Score=42.25  Aligned_cols=23  Identities=13%  Similarity=0.131  Sum_probs=20.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|++.|++|+|||++..++...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999765

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.02  E-value=0.015  Score=47.90  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=21.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|++.|++|+|||+|++++.+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            47899999999999999999876

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.02  E-value=0.0099  Score=48.89  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=17.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+.|+|.|.+||||||+.+.|...
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=95.00  E-value=0.0085  Score=55.05  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=18.4

Q ss_pred             CEEEEecCCCCchhhHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~  113 (237)
                      -.++|+|++|||||||++.++
T Consensus       349 e~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          349 TFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             SEEEEECSTTSSHHHHHTTTH
T ss_pred             CEEEEEeeCCCCHHHHHHHHH
Confidence            368999999999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.99  E-value=0.012  Score=58.12  Aligned_cols=25  Identities=32%  Similarity=0.537  Sum_probs=22.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +-.++++|++|||||||++.|++..
T Consensus       444 G~~vaivG~sGsGKSTll~ll~~~~  468 (1321)
T 4f4c_A          444 GQTVALVGSSGCGKSTIISLLLRYY  468 (1321)
T ss_dssp             TCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred             CcEEEEEecCCCcHHHHHHHhcccc
Confidence            4489999999999999999999864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.98  E-value=0.013  Score=48.00  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|+++|.+||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6889999999999999999863

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.97  E-value=0.015  Score=44.01  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..-|++.|++|+||||+.-.|...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            346899999999999999998876

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=94.95  E-value=0.012  Score=45.65  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..++|.|++|+|||||+..+...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.95  E-value=0.012  Score=56.23  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=20.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -.++++|++|+|||||++.|.+.
T Consensus       462 e~v~LiGpNGsGKSTLLk~LagG  484 (986)
T 2iw3_A          462 RRYGICGPNGCGKSTLMRAIANG  484 (986)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999964

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.91  E-value=0.017  Score=48.83  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=21.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+.|+++|++|+||||+...|.+.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHH
Confidence            3468999999999999999988764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.87  E-value=0.014  Score=48.97  Aligned_cols=24  Identities=17%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...++|.|++|+|||||++.+.+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999999875

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=94.85  E-value=0.015  Score=48.13  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...+++.|++|+|||||++++.+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346899999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	1e-19
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	1e-16
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	9e-13
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	1e-11
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	4e-11
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	1e-09
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-07
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	3e-07
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	3e-07
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	1e-06
d1g7sa4	227	c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-	8e-06
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	1e-05
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-05
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-05
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	3e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	1e-04
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	8e-04
d1jwyb_	306	c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc	0.003
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	0.004

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 81.7 bits (200), Expect = 1e-19
 Identities = 56/160 (35%), Positives = 88/160 (55%)

Query: 73  NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
            K E   +A     +P   LPEIA AGRSNVGKSS +N+L  +  + RTS KPG TQT+N
Sbjct: 4   TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63

Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
           F+ +  +L  VD+PGYGFA   +  ++AW  +++ Y++TR  LK V  ++D +      D
Sbjct: 64  FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD 123

Query: 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
            ++   ++       V+ TK D +      + A  + + +
Sbjct: 124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL 163

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 73.3 bits (178), Expect = 1e-16
 Identities = 61/161 (37%), Positives = 85/161 (52%)

Query: 77  FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
           F  +A      P+    E+AFAGRSN GKSS LN LT Q  + RTS  PG TQ IN F++
Sbjct: 1   FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60

Query: 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
                LVDLPGYG+A   EE+K  W+  + EY+  R SL+ + +L+D +  +K  D ++I
Sbjct: 61  ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI 120

Query: 197 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYLCG 237
                S     V+LTK D +       +   + E +    G
Sbjct: 121 EWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG 161

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (156), Expect = 9e-13
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 18/158 (11%)

Query: 64  ERIEENIFRNKLEFFAAAKVSSSFPAPD--LPEIAFAGRSNVGKSSMLNALTRQWGVVRT 121
             IE  +    ++    + +S +    D  +  +A  G +  GKSS +N L         
Sbjct: 27  NLIELRMRAGNIQL-TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG 85

Query: 122 SDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLK 176
           + K G+ +               +   DLPG G      +           Y+      +
Sbjct: 86  AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD----------TYLEKMKFYE 135

Query: 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
               +I +    K  D ++   +   + ++  V TK D
Sbjct: 136 YDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 173

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 14/147 (9%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           I FAGRSNVGKS+++  LT +   VR   +PG+T+ I   +      +            
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLP 60

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLI------------DTKWGVKPRDHELISLMERS 202
           +EV++  ++ +  ++        V +L+              K G  P D E    +   
Sbjct: 61  KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL 120

Query: 203 QTKYQVVLTKTDTVFPIDVARRAMQIE 229
                V + K D +  +      +  +
Sbjct: 121 DIPTIVAVNKLDKIKNVQEVINFLAEK 147

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 57.7 bits (138), Expect = 4e-11
 Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 11/145 (7%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 147
           + ++   G  N GKSS+L A+TR     + +  P  T + N          +  L D+PG
Sbjct: 1   IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 58

Query: 148 YGFAYAKEE--VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK 205
                ++ +    +    + +  V   V       L   +   K       +L+ R    
Sbjct: 59  IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV 118

Query: 206 YQVVLTKTDTVFPIDVARRAMQIEE 230
                 K D +    V   A  +  
Sbjct: 119 AL---NKVDLLEEEAVKALADALAR 140

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 53.8 bits (128), Expect = 1e-09
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 8/99 (8%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 147
           L ++   G  +VGKS++L+ ++      + +D    T   N        G    + DLP 
Sbjct: 1   LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLP- 57

Query: 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186
            G      +      + ++    TRV +  + +      
Sbjct: 58  -GLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGR 95

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 10/145 (6%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 151
           +   G+ NVGKS++LN L  +      +D PG T+ +   ++   G    +VD  G    
Sbjct: 3   MVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV--- 58

Query: 152 YAKEEVKDAWEE-LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVL 210
             + E  D  E   ++  +        V  ++D    +   D +++  ++  +    +  
Sbjct: 59  --RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINK 116

Query: 211 TKTDTVFPIDVARRAMQIEEVIFYL 235
                    +  +  +  +  +  +
Sbjct: 117 VDVVEKINEEEIKNKLGTDRHMVKI 141

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
           IA  GR NVGKS++LN L  Q  +  TS K   T+
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTR 41

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.7 bits (109), Expect = 3e-07
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
           +   GR NVGKS++ N L ++       D+ G+T+     
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKK-KAIVEDEEGVTRDPVQD 41

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 8/137 (5%)

Query: 90  PDLPE---IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLV 143
           P++ +   +A  GR NVGKS++ NA+  +      S  PG T+     ++   G K   V
Sbjct: 3   PEITDAIKVAIVGRPNVGKSTLFNAILNKE-RALVSPIPGTTRDPVDDEVFIDGRKYVFV 61

Query: 144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 203
           D  G       E          +   S       V +++D   G+  +D  +  LMER  
Sbjct: 62  DTAGLRRKSRVEPRTVEKYSNYRVVDSIE-KADVVVIVLDATQGITRQDQRMAGLMERRG 120

Query: 204 TKYQVVLTKTDTVFPID 220
               VV  K D V   +
Sbjct: 121 RASVVVFNKWDLVVHRE 137

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 43.1 bits (100), Expect = 8e-06
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 93  PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152
           P ++  G  + GK+++L+ +       R  +  G+TQ I   ++   +       +   +
Sbjct: 6   PIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKF 63

Query: 153 AKEEVK--------DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT 204
           +  E             E                 L++D   G KP+  E ++++   +T
Sbjct: 64  SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT 123

Query: 205 KYQVVLTKTDTVFP 218
            + V   K D +  
Sbjct: 124 PFVVAANKIDRIHG 137

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
           +A  G+ NVGKS++LN L     V   S +P 
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVK-VAPISPRPQ 38

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)

Query: 93  PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152
           P I  AG  N GK+S+L  LT        S +P +               V L  +    
Sbjct: 4   PSIIIAGPQNSGKTSLLTLLTTD------SVRPTVVSQEPLSAADYDGSGVTLVDFPGHV 57

Query: 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-----GVKPRDHELISLMERSQTKYQ 207
                    + L       +  +  V   +D K              +      +     
Sbjct: 58  KLR--YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 208 VVLTKTDTVFPIDVARRAMQIEEVI 232
           +   K++       ++    +E  I
Sbjct: 116 IACNKSELFTARPPSKIKDALESEI 140

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 1e-05
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
           +  AGR N GKSS+LNAL  +      +D  G T+ +   
Sbjct: 4   VVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLRE 42

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
               G  NVGKS+++N L ++  + +T D+PG+T +  + K+G +L L+D PG  +   +
Sbjct: 115 ALIIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFE 173

Query: 155 EE 156
           +E
Sbjct: 174 DE 175

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 6/129 (4%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           I   G+  VGKSS +N++  +  VV  S                    +++         
Sbjct: 35  ILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 93

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-----VV 209
             + D    ++K ++  +     + +     + V   D  +   +  S  K       V 
Sbjct: 94  GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA 153

Query: 210 LTKTDTVFP 218
           LT      P
Sbjct: 154 LTHAQFSPP 162

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 18/146 (12%), Positives = 40/146 (27%), Gaps = 13/146 (8%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           + F G  + GK+ +   L           +  +T +   +K+               +  
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTG---QYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES 59

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-----VV 209
              +         + S+  ++  V      +  VK     L  ++  S          + 
Sbjct: 60  LRFQLLD-----RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIA 114

Query: 210 LTKTDTVFPIDVARRAMQIEEVIFYL 235
             K D            Q+E+ +  L
Sbjct: 115 CNKQDIAMAKSAKLIQQQLEKELNTL 140

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 91  DLPEIAFAGRSNVGKSSMLNALTRQ 115
           DLP+I   G  + GKSS+L  +  +
Sbjct: 23  DLPQIVVVGSQSSGKSSVLENIVGR 47

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 35/158 (22%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDK---------------PGLTQTINFFKL--- 136
           +   G  + GK+++  ALT        + +                G+T      +    
Sbjct: 6   VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65

Query: 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
                 VD PG+              + +K  ++    +    L++    G  P+  E I
Sbjct: 66  KRHYSHVDCPGH-------------ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 112

Query: 197 SLMERSQTKYQV-VLTKTDTVFPIDVARRAMQIEEVIF 233
            L  +    Y V  + K D V   D       +E  + 
Sbjct: 113 LLARQVGVPYIVVFMNKVDMV---DDPELLDLVEMEVR 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.91
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.87
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.86
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.81
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.8
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.8
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.8
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.79
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.78
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.78
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.77
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.75
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.75
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.74
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.74
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.71
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.7
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.7
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.7
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.7
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.7
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.69
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.68
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.66
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.63
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.63
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.61
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.61
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.61
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.6
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.6
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.59
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.59
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.59
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.59
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.58
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.58
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.58
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.57
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.57
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.57
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.56
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.55
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.55
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.54
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.53
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.53
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.53
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.51
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.51
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.5
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.49
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.49
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.48
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.47
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.47
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.46
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.46
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.46
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.41
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.35
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.34
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.26
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.23
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.22
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.22
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.21
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.2
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.08
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.07
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.99
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.89
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.78
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.61
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.49
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.4
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.34
d1okkd2	207	GTPase domain of the signal recognition particle r	98.29
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.29
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.2
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.09
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.02
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.96
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.73
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.63
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.58
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.48
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.44
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.4
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.32
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.21
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.16
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.15
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.15
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.15
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.13
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.13
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.13
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.12
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.12
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.11
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.1
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.09
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.07
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.04
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.04
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.04
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.03
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.03
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.01
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.01
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.99
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.99
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.98
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.98
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.97
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.97
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.97
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.96
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.96
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.96
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.95
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.95
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.94
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.93
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.89
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.89
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.88
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.88
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.85
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.84
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.82
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.81
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.79
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.75
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.74
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.7
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.69
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.69
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.69
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.68
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.67
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.64
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.64
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.63
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.62
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.6
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.6
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.58
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.57
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.55
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.52
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.34
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.34
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.33
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.29
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.21
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.14
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.12
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.03
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.99
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.95
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.91
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.91
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.84
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.83
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.82
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.78
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.76
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.71
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.68
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.66
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.63
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.59
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.43
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.37
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.24
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.21
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.18
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.18
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.13
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.09
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.08
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.05
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.04
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.98
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.96
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.91
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.8
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.65
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.62
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.51
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.36
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.28
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.27
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.23
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.18
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.04
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.97
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.95
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.86
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.66
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.63
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.57
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.24
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.17
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.17
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	93.16
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.03
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	92.87
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.65
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.63
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.49
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.4
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.35
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	92.33
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.08
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	91.99
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	91.82
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.68
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	91.47
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	91.46
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.11
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.1
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	90.34
d1xzpa1	173	TrmE connector domain {Thermotoga maritima [TaxId:	89.78
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	89.44
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.29
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	88.5
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	87.81
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.26
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	87.09
d1xpua3	289	Transcription termination factor Rho, ATPase domai	87.09
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	85.9
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.56
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	85.22
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	84.71
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	84.66
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	82.96
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	82.85
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	82.26
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.46

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=2.1e-24  Score=168.19  Aligned_cols=154  Identities=35%  Similarity=0.593  Sum_probs=115.6

Q ss_pred             hhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHH
Q 026538           80 AAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKD  159 (237)
Q Consensus        80 ~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~  159 (237)
                      ++....+.|..+.|+|+|+|++|||||||+|+|++....+.++..+++|.+.........+.++|++|.+..........
T Consensus        11 ~~~~~~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   90 (195)
T d1svia_          11 SAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSERE   90 (195)
T ss_dssp             EESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHH
T ss_pred             ecCChhHCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeeccccccccccc
Confidence            34455667778889999999999999999999999755567788888888887777788899999999876544444444


Q ss_pred             HHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          160 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       160 ~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                      ....+...+......++++++|+|+..++...+.++++.+...++|+++|+||+|+.++.+..+..+.+++.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~  164 (195)
T d1svia_          91 AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLN  164 (195)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT
T ss_pred             hhhhHHhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhc
Confidence            44555666666666689999999999999999999999999999999999999999988887777777776654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=2.3e-21  Score=148.90  Aligned_cols=123  Identities=30%  Similarity=0.502  Sum_probs=90.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCccc-chHHHHHHHH-HHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEE-LVKEYVST  171 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~-~~~~~~~~  171 (237)
                      .|+++|+||||||||+|+|++. . ..+++.||+|+++..+.. ..+.++||||++.... .......+.. +...+...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~-~-~~~~~~~g~T~~~~~~~~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK-K-VRRGKRPGVTRKIIEIEW-KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN   78 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC-C-CSSSSSTTCTTSCEEEEE-TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-C-ceeeCCCCEeeccccccc-ccceecccCCceeccccccccccccchhhhhhhhhc
Confidence            6899999999999999999998 4 467889999988766544 3588999999865322 2222222222 23333344


Q ss_pred             cccccEEEEEEeCCC-----------CCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          172 RVSLKRVCLLIDTKW-----------GVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~-----------~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                      ...+|++++|+|+..           +....+.++++.+...++|+++|+||+|++...
T Consensus        79 ~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~  137 (184)
T d2cxxa1          79 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV  137 (184)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred             ccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhH
Confidence            455899999999852           456666778888888899999999999987543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=2.6e-21  Score=148.32  Aligned_cols=121  Identities=22%  Similarity=0.227  Sum_probs=91.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ..|+|+|.+|||||||+|+|++. ....+++.+++|.+...   ...+..+.++||||+.......  .   ..+...+.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~-~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~--~---~~~~~~~~   79 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDAL--G---EFMDQEVY   79 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHH--H---HHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC-CceeecccCCcccccccceeeeeeeeeeeccccccccccccc--c---hhcccccc
Confidence            47999999999999999999998 55677888888876543   3346789999999986532211  1   12223333


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhc--CCcEEEEEecCCCCChH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~  219 (237)
                      .....+|++++|+|++.++...+..+.+.+...  +.|+++|+||+|+....
T Consensus        80 ~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~  131 (178)
T d1wf3a1          80 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP  131 (178)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH
T ss_pred             cccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCH
Confidence            444559999999999998888887777777653  68999999999997643

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=2.4e-19  Score=140.30  Aligned_cols=128  Identities=19%  Similarity=0.256  Sum_probs=92.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccce----------eeccC-----CCCceEEE---EEEEcCCeEEEEeCCCCCCcccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGV----------VRTSD-----KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK  154 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~----------~~~~~-----~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~  154 (237)
                      ++|+++|+.++|||||+++|+...+.          .....     .+|.|.+.   .+...+..++|+||||+.+    
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~d----   79 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD----   79 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG----
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchh----
Confidence            58999999999999999999743100          00011     12555443   3445588999999999854    


Q ss_pred             hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHH-HHHHHHHHHHHH
Q 026538          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEEVI  232 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~-~~~~~~~l~~~l  232 (237)
                               ++...++....+|++++|+|+..++..++.+.+..+...++| +++++||+|+++.++ ..+..++++..+
T Consensus        80 ---------f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l  150 (204)
T d2c78a3          80 ---------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL  150 (204)
T ss_dssp             ---------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred             ---------hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence                     233334444559999999999999999999999999999987 778899999986544 344555666655


Q ss_pred             H
Q 026538          233 F  233 (237)
Q Consensus       233 ~  233 (237)
                      .
T Consensus       151 ~  151 (204)
T d2c78a3         151 N  151 (204)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1.5e-19  Score=137.31  Aligned_cols=120  Identities=22%  Similarity=0.270  Sum_probs=79.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      +|+++|++|||||||+|+|++. ....++..+++|....   +...+..+.++||||+........ ...   ....+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-~~~---~~~~~~~   76 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDII-SQK---MKEVTLN   76 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCC-CHH---HHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CcceecccCceeeccccccccccccccccccccceeeeecccc-ccc---ccccccc
Confidence            6899999999999999999998 4466778888876642   333467799999999765322111 111   1122222


Q ss_pred             ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      ....+|++++++|++.+....+..++..+...++|+++|+||+|+..+
T Consensus        77 ~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~  124 (171)
T d1mkya1          77 MIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE  124 (171)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH
T ss_pred             ccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhh
Confidence            233489999999999888888888888888889999999999998643

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.80  E-value=4e-19  Score=136.18  Aligned_cols=124  Identities=25%  Similarity=0.368  Sum_probs=86.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccC------CCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~------~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~  163 (237)
                      .+|+++|++|+|||||+|+|++... ....+      ..|.|.+.   .+...+..+.++|+||+.             .
T Consensus         6 inIaiiG~~naGKSTL~n~L~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~-------------~   71 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTEIAS-TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------------D   71 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSHH-------------H
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHhcC-ceecccccceeeeeeeccccccccccCCcccccccccccc-------------c
Confidence            4899999999999999999997631 22222      22232222   233346779999999952             2


Q ss_pred             HHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                      +..........+|++++++|+..+...++.+++..+...++|+++|+||+|+...++.....+.++.
T Consensus        72 ~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~  138 (179)
T d1wb1a4          72 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKS  138 (179)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHH
Confidence            2333333444589999999999999888888888888899999999999999987765544444443

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1.1e-19  Score=139.66  Aligned_cols=127  Identities=28%  Similarity=0.332  Sum_probs=86.4

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ..++|+++|.+|||||||+|+|++. ....+++.+++|...   .+...+..+.++||||+.......... ........
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~-~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRT-VEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC------------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC-CcceeecccccccccceeeeccCCceeeeeccCCccccccccccc-cccchhHH
Confidence            4579999999999999999999998 556778888877665   344457889999999975421100000 00000011


Q ss_pred             HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                      .......+|++++|+|+..+.......++..+...+.|+++|+||+|+....
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~  136 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHR  136 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred             HHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcch
Confidence            1112223899999999999999999999999989999999999999987543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=1.1e-19  Score=139.24  Aligned_cols=128  Identities=21%  Similarity=0.177  Sum_probs=81.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE----EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~----~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +.|+|+|.+|||||||+|+|++.. .. ..+.++.|....    ....+..+.+|||||+........      .....+
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~~~-~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~------~~~~~~   73 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTRAH-PK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK------GLGLEF   73 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSC-CE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC------CSCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-Cc-eeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHH------HHHHHH
Confidence            579999999999999999999984 33 344444333322    222367799999999865322111      111223


Q ss_pred             HhccccccEEEEEEeCCCCCChhHHHHHHHHH-----hcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQI  228 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~-----~~~~piilv~NK~Dl~~~~~~~~~~~~l  228 (237)
                      +.....++++++++|...........+..++.     ..++|+++|+||+|+..+++.....+.+
T Consensus        74 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~  138 (180)
T d1udxa2          74 LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL  138 (180)
T ss_dssp             HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence            33334489999999987543333223333322     2358999999999999887665554443

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.78  E-value=9e-20  Score=145.14  Aligned_cols=111  Identities=21%  Similarity=0.306  Sum_probs=80.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-----EE----------------EEEcCCeEEEEeCCCCCC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----IN----------------FFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-----~~----------------~~~~~~~~~liDTpG~~~  150 (237)
                      .|.|+|+|++|+|||||+|+|++... .. ....++|..     ..                +...+..+.++||||+.+
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~   82 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGSAV-AS-REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH-SC-C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhhcc-hh-eecCceeeeccccccccccccccccccccceeecccccccccccccceec
Confidence            46799999999999999999998631 11 111112211     10                011245799999999754


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~  217 (237)
                      -             ..........+|++++|+|+..+++..+...+..+...++|+++|+||+|+..
T Consensus        83 f-------------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~  136 (227)
T d1g7sa4          83 F-------------TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH  136 (227)
T ss_dssp             C-------------TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred             c-------------cccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCC
Confidence            1             11222334459999999999999999999999999999999999999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=6.7e-19  Score=132.14  Aligned_cols=119  Identities=25%  Similarity=0.287  Sum_probs=81.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|++|||||||+|+|++. ....++..++++++.   .+...+..+.++||||+.+.....  ..........++
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~~~~~~   78 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV--ERIGIERAWQEI   78 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHH--HHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceEeecccccccceEeeeeeccCceeeeccccccccccccc--hhHHHHHHHHHH
Confidence            58999999999999999999998 446677777777653   334457789999999987642222  111111122222


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHH-HHHh--cCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELIS-LMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~-~l~~--~~~piilv~NK~Dl~~  217 (237)
                         ..+|++++++|+...........+. .+..  .++|+++|+||+|+.+
T Consensus        79 ---~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~  126 (161)
T d2gj8a1          79 ---EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG  126 (161)
T ss_dssp             ---HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred             ---Hhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhh
Confidence               3389999999987655544443332 3332  3689999999999753

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.77  E-value=2.6e-18  Score=133.37  Aligned_cols=128  Identities=19%  Similarity=0.296  Sum_probs=94.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc--------------ceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccch
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKE  155 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~--------------~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~  155 (237)
                      .+|+++|+.++|||||+++|++..              .........|.|.+..   +...+..+.++||||+.      
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~------   77 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA------   77 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH------
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchH------
Confidence            589999999999999999998520              0011122345666543   33447889999999963      


Q ss_pred             HHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCC-cEEEEEecCCCCChHHH-HHHHHHHHHHHH
Q 026538          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPIDV-ARRAMQIEEVIF  233 (237)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-piilv~NK~Dl~~~~~~-~~~~~~l~~~l~  233 (237)
                             .+.....+....+|++++|+|+..++.+++.+.+..+...++ |+|+++||+|+....+. +....+++..+.
T Consensus        78 -------~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~  150 (196)
T d1d2ea3          78 -------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLT  150 (196)
T ss_dssp             -------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHH
Confidence                   455566666777999999999999999999998988888765 68899999999865444 334445555554

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=7.2e-19  Score=131.81  Aligned_cols=121  Identities=22%  Similarity=0.346  Sum_probs=86.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccc----hHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK----EEVKDAWEELV  165 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~----~~~~~~~~~~~  165 (237)
                      .+|+++|.+|||||||+|+|++. ....++..+++|+..   .+...+..+.++||||+......    ..+..      
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~------   73 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIER------   73 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHH------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHH------
Confidence            37999999999999999999998 556777777777553   34445778999999997543111    11111      


Q ss_pred             HHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHH
Q 026538          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR  224 (237)
Q Consensus       166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~  224 (237)
                        ++.....+|++++|+|++.+....+..+...+.  ..++++++||+|+.+..+....
T Consensus        74 --~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~~--~~~~i~~~~k~d~~~~~~~~~~  128 (160)
T d1xzpa2          74 --TLQEIEKADIVLFVLDASSPLDEEDRKILERIK--NKRYLVVINKVDVVEKINEEEI  128 (160)
T ss_dssp             --HHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHT--TSSEEEEEEECSSCCCCCHHHH
T ss_pred             --HHHHHHhCCEEEEEEeCCCCcchhhhhhhhhcc--cccceeeeeeccccchhhhHHH
Confidence              222222389999999999887777766655443  5789999999999876544333

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=7e-18  Score=128.97  Aligned_cols=152  Identities=31%  Similarity=0.392  Sum_probs=94.7

Q ss_pred             hhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce-EEEEEEE--cCCeEEEEeCCCCCCcccchHH
Q 026538           81 AKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTINFFK--LGTKLCLVDLPGYGFAYAKEEV  157 (237)
Q Consensus        81 ~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t-~~~~~~~--~~~~~~liDTpG~~~~~~~~~~  157 (237)
                      +-..++.|.+..++|+++|++|||||||+|+|++.. ........+++ .......  .+......++++........  
T Consensus         5 ~~~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   81 (188)
T d1puia_           5 APDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK-SLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEM--   81 (188)
T ss_dssp             ESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEETTEEEEECCCCC------CC--
T ss_pred             CCChhHCCCccCCEEEEECCCCCCHHHHHHHHhCCC-ceEeecccccceeeccceecccccceeeeecccccchhhhh--
Confidence            334466778889999999999999999999999984 33333333333 2333332  23333333444332211111  


Q ss_pred             HHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 026538          158 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYL  235 (237)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~~  235 (237)
                      ..........+......++.++++.++..+........+..+.....++++++||+|+....+.....+.+++.+...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~  159 (188)
T d1puia_          82 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAF  159 (188)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG
T ss_pred             hhhhhhhhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhh
Confidence            111222333333444446777888888888888888888888888899999999999999888888888887776544

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.74  E-value=6.4e-18  Score=136.67  Aligned_cols=124  Identities=19%  Similarity=0.172  Sum_probs=88.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...+|+++|.+|+|||||+|+|+|. ....++..+++|++...+   ..+..+.+|||||+.++.....   .....+..
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~-~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~---~~~~~i~~  106 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND---MALNIIKS  106 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH---HHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC-CceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHH---HHHHHHHH
Confidence            3479999999999999999999998 567778888888765433   3477899999999976432221   11222222


Q ss_pred             HHhccccccEEEEEEeCCC-CCChhHHHHHHHHHh-----cCCcEEEEEecCCCCChH
Q 026538          168 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~~  219 (237)
                      +. .....++++||++... .++..+...++.+..     ...++++|+||+|...+.
T Consensus       107 ~~-~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         107 FL-LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             HT-TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HH-hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence            22 2334788999988654 577877777766653     236899999999998643

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=6.3e-18  Score=131.86  Aligned_cols=114  Identities=21%  Similarity=0.246  Sum_probs=72.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .|+|+|+|++|||||||+|+|++.. ..     +++|++...   ...+..+.+|||||+...      ...+....   
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~-~~-----~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~------~~~~~~~~---   67 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDS-VR-----PTVVSQEPLSAADYDGSGVTLVDFPGHVKL------RYKLSDYL---   67 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS-CC-----CBCCCSSCEEETTGGGSSCEEEECCCCGGG------THHHHHHH---
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC-CC-----CeEEecceEEEEEeCCeEEEEEecccccch------hhHHHHHH---
Confidence            4799999999999999999999883 22     234433222   223678999999997541      11122222   


Q ss_pred             HhccccccEEEEEEeCCCCCCh--hHHHH-------HHHHHhcCCcEEEEEecCCCCChHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKP--RDHEL-------ISLMERSQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~--~~~~~-------~~~l~~~~~piilv~NK~Dl~~~~~  220 (237)
                      ......++.+++++|+......  ....+       ++.....++|+++|+||+|+.....
T Consensus        68 ~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_          68 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  128 (209)
T ss_dssp             HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             HHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence            2223337899999997643221  11222       2223345799999999999975443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.71  E-value=3.6e-18  Score=131.14  Aligned_cols=120  Identities=18%  Similarity=0.210  Sum_probs=71.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE----EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~----~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +.|+|+|++|||||||+|+|++. .. .+.+.+++|.....    +..+..+.+|||||+.......  ...+.    .+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~-~~-~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~--~~~~~----~~   73 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSA-KP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG--VGLGH----QF   73 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEE-CC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT--TTTHH----HH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCC-CC-ceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHH--HHHHH----HH
Confidence            57999999999999999999998 43 44555565544322    2235679999999974311111  01111    22


Q ss_pred             HhccccccEEEEEEeCCCC--CChhHHHHH-H-HHH-----hcCCcEEEEEecCCCCChHH
Q 026538          169 VSTRVSLKRVCLLIDTKWG--VKPRDHELI-S-LME-----RSQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~--~~~~~~~~~-~-~l~-----~~~~piilv~NK~Dl~~~~~  220 (237)
                      +.....++.++++++....  ......... . ...     ..++|+++|+||+|+....+
T Consensus        74 l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~  134 (185)
T d1lnza2          74 LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE  134 (185)
T ss_dssp             HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH
T ss_pred             HHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHH
Confidence            2222237888888875432  222221111 1 111     12579999999999986543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.1e-17  Score=141.60  Aligned_cols=115  Identities=19%  Similarity=0.228  Sum_probs=79.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccc---eeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWG---VVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~---~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ..+|+++|.+|||||||+|+|+|...   ....++..++|++...+..  +..+.+|||||++......  +    ....
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~--~----~~~~  129 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPP--D----TYLE  129 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCH--H----HHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccH--H----HHHH
Confidence            36999999999999999999998521   1233445567777655443  4569999999997643222  1    1111


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      .  .....+|+++++.|.  .++..+..+++.+...++|+++|+||+|..
T Consensus       130 ~--~~~~~~d~~l~~~~~--~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~  175 (400)
T d1tq4a_         130 K--MKFYEYDFFIIISAT--RFKKNDIDIAKAISMMKKEFYFVRTKVDSD  175 (400)
T ss_dssp             H--TTGGGCSEEEEEESS--CCCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred             H--hhhhcceEEEEecCC--CCCHHHHHHHHHHHHcCCCEEEEEeCcccc
Confidence            1  112237777777664  578889999999999999999999999964

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.70  E-value=8.2e-17  Score=124.76  Aligned_cols=130  Identities=21%  Similarity=0.293  Sum_probs=88.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccc-eeeccCCCCceEEEEEE-----E---------------------cCCeEEEEe
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFF-----K---------------------LGTKLCLVD  144 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~-~~~~~~~~g~t~~~~~~-----~---------------------~~~~~~liD  144 (237)
                      ..+|+++|..++|||||+|+|++... ........|.|.+..+.     .                     ....+.++|
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD   84 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeec
Confidence            45899999999999999999997421 01111223333222110     0                     013489999


Q ss_pred             CCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-ChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHH
Q 026538          145 LPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVA  222 (237)
Q Consensus       145 TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~  222 (237)
                      |||+.             .+.....+....+|++++|+|+..+. .....+.+..+...++| +++++||+|+.+.....
T Consensus        85 tPGh~-------------~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~  151 (195)
T d1kk1a3          85 APGHE-------------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKAL  151 (195)
T ss_dssp             CSSHH-------------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred             cchhh-------------hhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHH
Confidence            99952             34555555566699999999999886 44556777777776766 78899999999887776


Q ss_pred             HHHHHHHHHHHh
Q 026538          223 RRAMQIEEVIFY  234 (237)
Q Consensus       223 ~~~~~l~~~l~~  234 (237)
                      ...+.+.+.+..
T Consensus       152 ~~~~~~~~~~~~  163 (195)
T d1kk1a3         152 ENYRQIKEFIEG  163 (195)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcc
Confidence            666666665543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.5e-16  Score=124.11  Aligned_cols=126  Identities=18%  Similarity=0.238  Sum_probs=77.5

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      +|+++|++|||||||+|+|++.. .....+..+++.......  .+..+.+||+||...      .   .......++..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~------~---~~~~~~~~~~~   71 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES------L---RFQLLDRFKSS   71 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHH------H---HHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC-CCcccCCeeEEEEEEEEeeeeeeeeeeeecccccc------c---cchhhhhhhhh
Confidence            79999999999999999999873 333333333333332221  257799999999532      1   11223334333


Q ss_pred             cccccEEEEEEeCCCCCCh---hHHHHHHHHH-----hcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          172 RVSLKRVCLLIDTKWGVKP---RDHELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~---~~~~~~~~l~-----~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                         ++.+++|+|++.....   ....+...+.     ...+|+++|+||+|+..........+.+++.+
T Consensus        72 ---~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~  137 (207)
T d2fh5b1          72 ---ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKEL  137 (207)
T ss_dssp             ---EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred             ---ccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHh
Confidence               8999999998753211   1122222222     23579999999999986544444444444443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=1.1e-17  Score=135.73  Aligned_cols=128  Identities=20%  Similarity=0.240  Sum_probs=90.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccccee----------eccC------CCCceE---EEEEEEcCCeEEEEeCCCCCCcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV----------RTSD------KPGLTQ---TINFFKLGTKLCLVDLPGYGFAY  152 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~----------~~~~------~~g~t~---~~~~~~~~~~~~liDTpG~~~~~  152 (237)
                      ..+|+++|+.++|||||+.+|+-..+..          .+.+      ..|.|.   -..+.+.+..++|+||||+.+- 
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF-   84 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF-   84 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC-
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh-
Confidence            3589999999999999999997431100          0111      111111   1344556888999999998752 


Q ss_pred             cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI  232 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l  232 (237)
                       ..++.    ..+       ..+|.+++|+|+..+++.....+++.+...++|.++++||+|... .+..+.++++++.+
T Consensus        85 -~~e~~----~~l-------~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~-ad~~~~l~ei~~~l  151 (276)
T d2bv3a2          85 -TIEVE----RSM-------RVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG-ADLWLVIRTMQERL  151 (276)
T ss_dssp             -STTHH----HHH-------HHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTT-CCHHHHHHHHHHTT
T ss_pred             -HHHHH----HHH-------HhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccc-cccchhHHHHHHHh
Confidence             11111    111       129999999999999999999999999999999999999999854 34567777777765


Q ss_pred             H
Q 026538          233 F  233 (237)
Q Consensus       233 ~  233 (237)
                      +
T Consensus       152 ~  152 (276)
T d2bv3a2         152 G  152 (276)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.70  E-value=5.4e-16  Score=121.03  Aligned_cols=128  Identities=20%  Similarity=0.308  Sum_probs=86.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccC--------CCC-ceEEEEEE------------------------EcCC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPG-LTQTINFF------------------------KLGT  138 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~--------~~g-~t~~~~~~------------------------~~~~  138 (237)
                      ..+|+++|..++|||||+++|++... .....        ..+ .+.+....                        ....
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWT-SKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC---------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhc-hhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            35999999999999999999997421 00000        000 11111000                        0012


Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-ChhHHHHHHHHHhcCC-cEEEEEecCCCC
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTV  216 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-piilv~NK~Dl~  216 (237)
                      .+.++||||+.             .+..........+|++++|+|+..++ ..+..+.+..+...++ |+++++||+|+.
T Consensus        87 ~~~iiD~PGH~-------------df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~  153 (205)
T d2qn6a3          87 RISFIDAPGHE-------------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV  153 (205)
T ss_dssp             EEEEEECSCHH-------------HHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGS
T ss_pred             EEEEeccchHH-------------HHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCc
Confidence            58999999963             45555566666799999999999987 5666778887777776 788999999999


Q ss_pred             ChHHHHHHHHHHHHHHH
Q 026538          217 FPIDVARRAMQIEEVIF  233 (237)
Q Consensus       217 ~~~~~~~~~~~l~~~l~  233 (237)
                      +..+.......+.+.+.
T Consensus       154 ~~~~~~~~~~~~~~~l~  170 (205)
T d2qn6a3         154 SKEEALSQYRQIKQFTK  170 (205)
T ss_dssp             CHHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHhc
Confidence            87776665555555443

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.69  E-value=4.6e-17  Score=123.71  Aligned_cols=117  Identities=16%  Similarity=0.229  Sum_probs=77.6

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      +...+|+++|.+|||||||+|+|.+. ....+.+..+.+.. .....+..+.+||++|...      ..    .....++
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~-~~~~~~~~~~~~~~-~i~~~~~~~~i~d~~g~~~------~~----~~~~~~~   81 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIK-SVQSQGFKLNVWDIGGQRK------IR----PYWRSYF   81 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEE-EEEETTEEEEEEECSSCGG------GH----HHHHHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcC-CCCcceeeeeeeEE-EeccCCeeEeEeecccccc------ch----hHHHHHh
Confidence            44579999999999999999999988 33444444454433 2333467899999999643      22    2233344


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHH----HhcCCcEEEEEecCCCCChHHH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l----~~~~~piilv~NK~Dl~~~~~~  221 (237)
                      ..   +|++++|+|+++..+... ..++..+    ...++|+++|+||+|+.+..+.
T Consensus        82 ~~---~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~  135 (176)
T d1fzqa_          82 EN---TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA  135 (176)
T ss_dssp             TT---CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH
T ss_pred             hc---cceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccH
Confidence            33   899999999876433222 1222222    1236899999999999765443

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.69  E-value=9.4e-17  Score=129.86  Aligned_cols=126  Identities=23%  Similarity=0.273  Sum_probs=90.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhccccee----------eccC------CCCceE---EEEEEEcCCeEEEEeCCCCCCccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVV----------RTSD------KPGLTQ---TINFFKLGTKLCLVDLPGYGFAYA  153 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~----------~~~~------~~g~t~---~~~~~~~~~~~~liDTpG~~~~~~  153 (237)
                      .+|+++|+.++|||||+.+|+...+..          .+.+      ..+.|.   -..+.+.+..++++||||+.+   
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~d---   79 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD---   79 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG---
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhh---
Confidence            489999999999999999996432110          0011      112222   234555688999999999864   


Q ss_pred             chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                                +..........+|.+++|+|+..+++......++.+...++|.++++||+|.. . ...+.++.+++.++
T Consensus        80 ----------F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~-~-~~~~~l~~~~~~lg  147 (267)
T d2dy1a2          80 ----------FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-G-DYYALLEDLRSTLG  147 (267)
T ss_dssp             ----------GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-C-CHHHHHHHHHHHHC
T ss_pred             ----------hhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccccc-c-cchhhhhhHHHHhc
Confidence                      22222222233999999999999999999999999999999999999999974 2 44466677777665

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.68  E-value=4.4e-16  Score=122.89  Aligned_cols=130  Identities=18%  Similarity=0.225  Sum_probs=87.8

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccccee---------eccCCCC----------------------ceE---EEEEEE
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV---------RTSDKPG----------------------LTQ---TINFFK  135 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~---------~~~~~~g----------------------~t~---~~~~~~  135 (237)
                      ...++|+++|..++|||||+++|+...+..         ..+...|                      .|.   ...+..
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            356789999999999999999997432110         0111111                      111   112233


Q ss_pred             cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCC
Q 026538          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTD  214 (237)
Q Consensus       136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~D  214 (237)
                      .+..+.++||||+.+             ++.........+|++++|+|+..++.++..+.+..+...++| +++++||+|
T Consensus        87 ~~~~~~iiD~PGH~d-------------fv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D  153 (222)
T d1zunb3          87 AKRKFIIADTPGHEQ-------------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMD  153 (222)
T ss_dssp             SSEEEEEEECCCSGG-------------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTT
T ss_pred             cceEEEEEeccchhh-------------hhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccc
Confidence            466799999999854             333333344459999999999999999999999999998876 889999999


Q ss_pred             CCC--hHHHHHHHHHHHHHH
Q 026538          215 TVF--PIDVARRAMQIEEVI  232 (237)
Q Consensus       215 l~~--~~~~~~~~~~l~~~l  232 (237)
                      +.+  ........+++...+
T Consensus       154 ~~~~~~~~~~~~~~~l~~~~  173 (222)
T d1zunb3         154 LNGFDERVFESIKADYLKFA  173 (222)
T ss_dssp             TTTSCHHHHHHHHHHHHHHH
T ss_pred             cccccceehhhhHHHHhhhh
Confidence            985  333334444454444

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.7e-16  Score=119.95  Aligned_cols=112  Identities=15%  Similarity=0.044  Sum_probs=65.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ++|+++|.+|||||||++++.+.. .....+..+.+....+...  ...+.+|||||...          +..+...|+.
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~----------~~~~~~~~~~   70 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVE-DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG----------GRWLPGHCMA   70 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-----------------CHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCc-cCCcCCeeeeeecceeeccccccceeeeecccccc----------cceecccchh
Confidence            589999999999999999999873 2222222222222222222  35688999999542          2233445555


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~  218 (237)
                      .   +|++++|+|.++..+... ..++..+..    ..+|+++|+||+|+...
T Consensus        71 ~---~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~  120 (168)
T d2gjsa1          71 M---GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS  120 (168)
T ss_dssp             S---CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGG
T ss_pred             h---hhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhh
Confidence            4   999999999875422222 234443332    35799999999998643

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.66  E-value=3.1e-16  Score=117.87  Aligned_cols=112  Identities=20%  Similarity=0.205  Sum_probs=71.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      .+|+++|.+|||||||+|+|.+. ......+..+... ..+...+..+.+|||||...          +......   ..
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~-~~~~~~~t~~~~~-~~~~~~~~~~~~~D~~G~~~----------~~~~~~~---~~   67 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGE-DVDTISPTLGFNI-KTLEHRGFKLNIWDVGGQKS----------LRSYWRN---YF   67 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTC-CCSSCCCCSSEEE-EEEEETTEEEEEEEECCSHH----------HHTTGGG---GC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC-CCCcccceEeeee-eeccccccceeeeecCcchh----------hhhHHHh---hh
Confidence            58999999999999999999987 3333333333222 23344578899999999521          1111112   22


Q ss_pred             ccccEEEEEEeCCCCCChhH--HHHHHHHH---hcCCcEEEEEecCCCCChH
Q 026538          173 VSLKRVCLLIDTKWGVKPRD--HELISLME---RSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~--~~~~~~l~---~~~~piilv~NK~Dl~~~~  219 (237)
                      ..++++++++|..+......  ..+...+.   ..+.|+++|+||+|+.+..
T Consensus        68 ~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  119 (165)
T d1ksha_          68 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL  119 (165)
T ss_dssp             TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             hhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc
Confidence            33899999999875322222  22223322   2468999999999996533

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=5.5e-16  Score=117.16  Aligned_cols=113  Identities=17%  Similarity=0.136  Sum_probs=71.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..+|+++|.+|||||||+++|++........+..+.+........   ...+.+|||||...          +..+...+
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~----------~~~~~~~~   74 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER----------YRTITTAY   74 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHTT
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchh----------hHHHHHHH
Confidence            368999999999999999999987422233334444443332222   34688999999532          12233333


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|....-+... ..+.....   ....|+++|+||+|+..
T Consensus        75 ~~~---ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  124 (169)
T d3raba_          75 YRG---AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED  124 (169)
T ss_dssp             TTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGG
T ss_pred             Hhc---CCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccccc
Confidence            333   899999999875321111 12222222   23678999999999754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.9e-16  Score=119.07  Aligned_cols=113  Identities=18%  Similarity=0.104  Sum_probs=71.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|.+|||||||+|+|++........+..+.+... .....  ...+.+|||+|......          +...++
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~   72 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA----------ITKAYY   72 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC----------CCHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhh----------hhhhhh
Confidence            589999999999999999999763222223333333222 22222  35689999999654211          112233


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~~  218 (237)
                      ..   ++++++|+|..+..+... ..+++.+..  .++|+++|+||+|+...
T Consensus        73 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~  121 (164)
T d1z2aa1          73 RG---AQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD  121 (164)
T ss_dssp             TT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred             cc---CceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccc
Confidence            32   999999999875422222 234444443  37899999999998643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=3.4e-16  Score=118.79  Aligned_cols=114  Identities=12%  Similarity=0.058  Sum_probs=65.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-c---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .++|+++|.+|||||||+|+|++........+..+.+....... .   ...+.+|||||....          ......
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~   71 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF----------QSLGVA   71 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------C
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhh----------hhHHHH
Confidence            46899999999999999999998742222222232222222221 1   235789999996431          112222


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-------cCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~piilv~NK~Dl~~~  218 (237)
                      ++   ..++++++++|.....+... ..++..+..       .++|+++|+||+|+...
T Consensus        72 ~~---~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~  127 (175)
T d1ky3a_          72 FY---RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES  127 (175)
T ss_dssp             CS---TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             Hh---hccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh
Confidence            22   33899999999875432221 334444332       26899999999998643

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.61  E-value=1.5e-15  Score=114.08  Aligned_cols=113  Identities=14%  Similarity=0.144  Sum_probs=69.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      .+|+++|++|||||||+++|.+........+..+.+.. .....+..+.+||+||...      ..    .....++.. 
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~~~~~~i~D~~G~~~------~~----~~~~~~~~~-   70 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGNVTIKLWDIGGQPR------FR----SMWERYCRG-   70 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETTEEEEEEEECCSHH------HH----TTHHHHHTT-
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeeeeEEEEEeecccccc------cc----ccccccccc-
Confidence            48999999999999999999887321111122221111 2233467899999999421      11    122233333 


Q ss_pred             ccccEEEEEEeCCCCCChhH-HHHHHHH-H---hcCCcEEEEEecCCCCChH
Q 026538          173 VSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~---~~~~piilv~NK~Dl~~~~  219 (237)
                        ++++++|+|+....+... ..++..+ .   ..++|+++|+||+|+....
T Consensus        71 --~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~  120 (164)
T d1zd9a1          71 --VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL  120 (164)
T ss_dssp             --CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC
T ss_pred             --cchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh
Confidence              999999999875422211 2222222 2   2368999999999987543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.61  E-value=7.8e-16  Score=116.68  Aligned_cols=112  Identities=17%  Similarity=0.162  Sum_probs=71.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      ..+|+++|.+|||||||+++|.+... ....+..+.+. .........+.+|||||....      .    .....+   
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~~~~-~~~~~t~~~~~-~~~~~~~~~~~i~D~~g~~~~------~----~~~~~~---   76 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV-ETVTYKNVKFNVWDVGGQDKI------R----PLWRHY---   76 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTCCCC-EEEEEETTEEE-EEEEETTEEEEEEEESCCGGG------H----HHHGGG---
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC-CCccceeeeeE-EEeeccceeeEEecCCCcchh------h----hHHHhh---
Confidence            36999999999999999999997732 22222222222 223334678999999996531      1    122222   


Q ss_pred             cccccEEEEEEeCCCCCChh--HHHHHHHHH---hcCCcEEEEEecCCCCCh
Q 026538          172 RVSLKRVCLLIDTKWGVKPR--DHELISLME---RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~---~~~~piilv~NK~Dl~~~  218 (237)
                      ...++++++|+|++......  ...+...+.   ....|+++|+||+|+.+.
T Consensus        77 ~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~  128 (173)
T d1e0sa_          77 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA  128 (173)
T ss_dssp             TTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred             hcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc
Confidence            23399999999987532222  122333332   236899999999999753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.1e-16  Score=116.69  Aligned_cols=111  Identities=18%  Similarity=0.181  Sum_probs=69.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      .++|+++|.+|||||||+++|++..  ......+.++.+..   +...  ...+.+|||||...          +..+..
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~----------~~~~~~   72 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER----------FRSITQ   72 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS--CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC--CCCcccccccceEEEEEEEECCEEEEEEEEECCCchh----------hHHHHH
Confidence            3689999999999999999999874  22233333333322   2112  34578999999532          122333


Q ss_pred             HHHhccccccEEEEEEeCCCCCChh-HHHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLME---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~---~~~~piilv~NK~Dl~~  217 (237)
                      .|+..   ++++++|+|.+...+.. ...++..+.   ....|+++|+||+|+..
T Consensus        73 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~  124 (171)
T d2ew1a1          73 SYYRS---ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE  124 (171)
T ss_dssp             GGSTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             HHHhc---cceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeeccccc
Confidence            33333   89999999977532211 123333332   23689999999999764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.60  E-value=1e-15  Score=116.88  Aligned_cols=113  Identities=19%  Similarity=0.170  Sum_probs=71.9

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ....+|+++|.+|||||||+++|.+.. .....+..+.... .....+..+.+|||||.....          .....++
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~D~~g~~~~~----------~~~~~~~   82 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGE-VVTTKPTIGFNVE-TLSYKNLKLNVWDLGGQTSIR----------PYWRCYY   82 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSE-EEEECSSTTCCEE-EEEETTEEEEEEEEC----CC----------TTGGGTT
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCC-CCccccccceEEE-EEeeCCEEEEEEecccccccc----------hhHHhhh
Confidence            345799999999999999999998873 3444444443332 233357789999999964311          1111222


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHH-HHh---cCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISL-MER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~-l~~---~~~piilv~NK~Dl~~  217 (237)
                      .   .++++++|+|+++..+... ..++.. +..   .+.|+++|+||+|+..
T Consensus        83 ~---~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~  132 (182)
T d1moza_          83 A---DTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG  132 (182)
T ss_dssp             T---TEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred             c---cceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc
Confidence            2   3899999999876544332 233322 222   3689999999999964

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.6e-15  Score=112.21  Aligned_cols=112  Identities=16%  Similarity=0.097  Sum_probs=69.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ++|+++|++|||||||+|+|++........+..+..........  ...+.+||++|....      .    .....++.
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~------~----~~~~~~~~   73 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY------S----AMRDQYMR   73 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG------H----HHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCcccc------c----cchhhhhh
Confidence            58999999999999999999987321111222222222222222  355889999996541      1    12222333


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      .   ++++++|+|..+..+... ..++..+..    .++|+++|+||+|+..
T Consensus        74 ~---~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  122 (166)
T d1ctqa_          74 T---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA  122 (166)
T ss_dssp             H---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC
T ss_pred             c---ccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc
Confidence            2   899999999875322211 334444432    3589999999999864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.4e-15  Score=110.74  Aligned_cols=111  Identities=14%  Similarity=0.050  Sum_probs=67.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ++|+++|.+|||||||++++++........+..+..........+  ..+.+|||+|....   .        ....++.
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~---~--------~~~~~~~   71 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT---I--------QREGHMR   71 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC---H--------HHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeeccccccc---c--------cchhhhc
Confidence            589999999999999999999873211112221222112222223  56889999996531   1        1122232


Q ss_pred             ccccccEEEEEEeCCCCCChhHH-HHHHHH---H-hcCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRDH-ELISLM---E-RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l---~-~~~~piilv~NK~Dl~~  217 (237)
                      .   ++++++|+|.+...+.... .+....   . ..+.|+++|+||+|+..
T Consensus        72 ~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~  120 (168)
T d2atva1          72 W---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH  120 (168)
T ss_dssp             H---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred             c---cccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhh
Confidence            2   8999999998754222221 122221   2 23689999999999853

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.3e-15  Score=110.56  Aligned_cols=112  Identities=14%  Similarity=-0.006  Sum_probs=66.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ++|+++|.+|||||||++++++........+..+..........+  ..+.+|||+|....          ......++.
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~~~~~~~   72 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF----------PAMQRLSIS   72 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC----------HHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccc----------ccccccccc
Confidence            589999999999999999999873211111211211111122222  45788999996541          112223333


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHH-----hcCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME-----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-----~~~~piilv~NK~Dl~~  217 (237)
                      .   +|++++|+|.++.-+... ..++..+.     ..++|+++|+||+|+..
T Consensus        73 ~---a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  122 (171)
T d2erxa1          73 K---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP  122 (171)
T ss_dssp             H---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred             c---eeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc
Confidence            3   899999999875321111 23333322     13689999999999854

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=4e-15  Score=118.56  Aligned_cols=128  Identities=19%  Similarity=0.229  Sum_probs=88.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccce-----------------------------eeccCCCCceEEE---EEEEcCCeE
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTI---NFFKLGTKL  140 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~-----------------------------~~~~~~~g~t~~~---~~~~~~~~~  140 (237)
                      .+|+++|+.++|||||+.+|+-..+.                             .......|.|.+.   .+...+..+
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i   86 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV   86 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEEE
Confidence            59999999999999999998631100                             0001123344432   344557889


Q ss_pred             EEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-------CChhHHHHHHHHHhcCCc-EEEEEec
Q 026538          141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQTK-YQVVLTK  212 (237)
Q Consensus       141 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~p-iilv~NK  212 (237)
                      +|+||||+.+             ++....+....+|++++|+|+..+       ...+..+.+..+...++| +++++||
T Consensus        87 ~iiDtPGH~d-------------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNK  153 (239)
T d1f60a3          87 TVIDAPGHRD-------------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK  153 (239)
T ss_dssp             EEEECCCCTT-------------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred             EEEECCCcHH-------------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEEC
Confidence            9999999864             555666667779999999999865       345677777778888887 7889999


Q ss_pred             CCCCC--hHHHHHHHHHHHHHHH
Q 026538          213 TDTVF--PIDVARRAMQIEEVIF  233 (237)
Q Consensus       213 ~Dl~~--~~~~~~~~~~l~~~l~  233 (237)
                      +|+..  .....+....+...+.
T Consensus       154 mD~~~~d~~~~~~~~~el~~~l~  176 (239)
T d1f60a3         154 MDSVKWDESRFQEIVKETSNFIK  176 (239)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH
Confidence            99875  3333444555555443

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.59  E-value=6.6e-15  Score=111.06  Aligned_cols=113  Identities=12%  Similarity=0.042  Sum_probs=68.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ..+|+++|.+|||||||+|++++........+..+......+...  ...+.+|||+|..+.          ..+...++
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~----------~~~~~~~~   73 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRDNYF   73 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------HHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccch----------hhhhhhcc
Confidence            358999999999999999999876321112222221111112222  356789999996541          12223333


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                      ..   +|++++|+|..+..+... ..+++.+.    ..+.|+++|+||+|+..
T Consensus        74 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~  123 (168)
T d1u8za_          74 RS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED  123 (168)
T ss_dssp             HH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred             cc---cceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccc
Confidence            33   899999999875322222 23444433    23689999999999853

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.1e-15  Score=115.68  Aligned_cols=113  Identities=13%  Similarity=0.090  Sum_probs=66.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|.+|||||||++++++........+..+..........   ...+.+|||||...          +..+...|+
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~~~   73 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK----------FGGLRDGYY   73 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHH----------HSSCGGGGT
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccc----------cceecchhc
Confidence            58999999999999999999877311111111121111111111   35689999999421          112222333


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~~  218 (237)
                      ..   ++++++|+|.++..+... ..++..+..  .++|+++|+||+|+...
T Consensus        74 ~~---~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~  122 (170)
T d1i2ma_          74 IQ---AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR  122 (170)
T ss_dssp             TT---CCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCS
T ss_pred             cc---ccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhh
Confidence            33   899999999876432222 233333322  37999999999998643

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.1e-15  Score=114.41  Aligned_cols=112  Identities=16%  Similarity=0.104  Sum_probs=69.8

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~  164 (237)
                      ...++|+++|.+|||||||++++++...   ......+..+.   .+...  ...+.+|||+|.......          
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----------   70 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYF---VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM----------   70 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSC---CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC----------
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCC---CcccccccccceeeEeccCCeeeeeeccccccccccccc----------
Confidence            4557999999999999999999998732   22222222221   12112  346788999997642111          


Q ss_pred             HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                      ...++..   ++++++|+|.+...+... ..++..+.    ..+.|+++|+||+|+..
T Consensus        71 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~  125 (173)
T d2fn4a1          71 REQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES  125 (173)
T ss_dssp             HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred             cchhhcc---ceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhh
Confidence            1222222   899999999875422221 23333332    24689999999999853

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.4e-15  Score=115.74  Aligned_cols=115  Identities=10%  Similarity=-0.016  Sum_probs=69.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+|+++|.+|||||||++++++........+..+.........  ....+.+|||+|....          ..+...|+.
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~~~~   72 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRPLSYP   72 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTGGGGCT
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchh----------cccchhhcc
Confidence            4899999999999999999998732111111111111111111  1346899999996431          112223333


Q ss_pred             ccccccEEEEEEeCCCCCChh--HHHHHHHHHh--cCCcEEEEEecCCCCChHH
Q 026538          171 TRVSLKRVCLLIDTKWGVKPR--DHELISLMER--SQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~--~~~piilv~NK~Dl~~~~~  220 (237)
                      .   +|++++|+|.++.-+..  ...+...+..  .++|+++|+||+|+.....
T Consensus        73 ~---~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~  123 (177)
T d1kmqa_          73 D---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH  123 (177)
T ss_dssp             T---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHH
T ss_pred             c---chhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhh
Confidence            3   89999999987532211  1223333333  3689999999999976443

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.5e-15  Score=114.12  Aligned_cols=113  Identities=19%  Similarity=0.160  Sum_probs=69.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..+|+++|.+|||||||++++++........+..+.+....... .  ...+.+|||||...-          ......+
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~----------~~~~~~~   73 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY----------RRITSAY   73 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT----------TCCCHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHH----------HHHHHHH
Confidence            36899999999999999999998742222233333333222222 2  246889999995321          0111122


Q ss_pred             HhccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      +..   ++++++|+|..+.-+.. ...++..+..   .++|+++|+||+|+.+
T Consensus        74 ~~~---~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~  123 (175)
T d2f9la1          74 YRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH  123 (175)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             hhc---cCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccc
Confidence            222   89999999987532111 1233333332   3589999999999864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=9.5e-16  Score=118.47  Aligned_cols=113  Identities=18%  Similarity=0.099  Sum_probs=71.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE-E--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-K--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~-~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+|+|.+|||||||+++|++........+..+++...... .  ....+.+|||||...-.          .+...+
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~----------~~~~~~   75 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR----------TITSSY   75 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT----------CCCGGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhH----------HHHHHH
Confidence            4689999999999999999999874222233344444333222 2  24568899999964311          111223


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHH---HhcCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLM---ERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l---~~~~~piilv~NK~Dl~~  217 (237)
                      +..   ++++++|+|.+....... ..+...+   .....|+++|+||+|+..
T Consensus        76 ~~~---a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~  125 (194)
T d2bcgy1          76 YRG---SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD  125 (194)
T ss_dssp             GTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred             hcc---CCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecccccc
Confidence            332   899999999875322222 1222222   234689999999999874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.8e-15  Score=110.27  Aligned_cols=113  Identities=14%  Similarity=0.088  Sum_probs=66.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .++|+++|.+|||||||++++++........+..+......+...  ...+.+|||+|.....          .....++
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~~~~   74 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG----------AMREQYM   74 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CC----------HHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeeccccccccccccccccccc----------ccccccc
Confidence            369999999999999999999987321222222222221222222  3568999999975421          1222223


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHH----HHhcCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISL----MERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~----l~~~~~piilv~NK~Dl~~  217 (237)
                      ..   +|++++|+|.+..-+... ..++..    ......|+++|+||+|+..
T Consensus        75 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~  124 (171)
T d2erya1          75 RT---GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH  124 (171)
T ss_dssp             HH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTT
T ss_pred             cc---cceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhh
Confidence            22   899999999875322211 223322    2234689999999999864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=8.4e-15  Score=111.11  Aligned_cols=121  Identities=24%  Similarity=0.250  Sum_probs=78.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ..|+|+|.+|||||||+|+|++. ....++..+++++...   .......+..+|+||.....    .............
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~   80 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE----KRAINRLMNKAAS   80 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH----HHHHHHHHTCCTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC-CceeeccCCCceEEEEEeeeecCCceeEeecCCCceecc----hhhhhhhhhhccc
Confidence            46899999999999999999998 5566666666554322   22235567788999975311    1111111111111


Q ss_pred             hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~  219 (237)
                      .....+++++++.|+.. .......+...+.....|.++|+||+|.+...
T Consensus        81 ~~~~~~~~~l~~~d~~~-~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~  129 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEK  129 (179)
T ss_dssp             SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCH
T ss_pred             cchhhcceeEEEEecCc-cchhHHHHHHHhhhccCceeeeeeeeeccchh
Confidence            22334788888888764 34555566666677788999999999987543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.2e-15  Score=127.34  Aligned_cols=112  Identities=19%  Similarity=0.268  Sum_probs=77.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceee--------------ccCCCCceEEE---EEEE----------------cCC
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR--------------TSDKPGLTQTI---NFFK----------------LGT  138 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~--------------~~~~~g~t~~~---~~~~----------------~~~  138 (237)
                      ..+|+++|+.++|||||+.+|+...+...              ....+|.|...   .++.                .+.
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            45899999999999999999974321000              00012222211   1111                123


Q ss_pred             eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      .++++||||+.+-  ..           ........+|++++|||+..|+..+...+++.+...++|+++|+||+|..
T Consensus        97 ~inliDtPGh~dF--~~-----------ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          97 LINLIDSPGHVDF--SS-----------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEECCCCCCSS--CH-----------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             EEEEEcCCCcHHH--HH-----------HHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence            4899999998651  11           11111222899999999999999999999999999999999999999974

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.7e-15  Score=110.71  Aligned_cols=112  Identities=13%  Similarity=0.018  Sum_probs=68.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+|+++|.+|||||||++++++........+..+..........  ...+.+||++|....          ......++.
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~~~~~~~   73 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRDLYIK   73 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCcccc----------ccchHHHhh
Confidence            58999999999999999999987422222222221111112212  356889999996531          122223333


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                      .   ++++++|+|.....+... ..+...+.    ..++|+++|+||+|+..
T Consensus        74 ~---a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~  122 (167)
T d1kaoa_          74 N---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES  122 (167)
T ss_dssp             H---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred             c---ccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhh
Confidence            3   899999999875322221 22332222    23689999999999854

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.2e-15  Score=112.51  Aligned_cols=112  Identities=20%  Similarity=0.056  Sum_probs=67.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+|+++|.+|||||||+++|++........+..+......+...  ...+.+|||+|......          +...++.
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~----------~~~~~~~   74 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI----------FPQTYSI   74 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCC----------CCGGGTS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeeccccccccccc----------ccchhhh
Confidence            58999999999999999999876321111122111111111112  35678999999654211          1112222


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHH----HhcCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l----~~~~~piilv~NK~Dl~~  217 (237)
                         .+|++++|+|..+..+... ..++..+    ...++|+++|+||+|+..
T Consensus        75 ---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~  123 (167)
T d1xtqa1          75 ---DINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM  123 (167)
T ss_dssp             ---SCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGG
T ss_pred             ---hhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeecccccccc
Confidence               3999999999875422222 2233333    234689999999999854

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-15  Score=116.31  Aligned_cols=117  Identities=11%  Similarity=-0.017  Sum_probs=70.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ...++|+++|.+|||||||+++++.........+..+..........  ...+.+|||+|....          ..+...
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~----------~~~~~~   76 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------DRLRPL   76 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSS----------TTTGGG
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchh----------hhhhhh
Confidence            34579999999999999999999986321111111111111112212  345789999996531          111222


Q ss_pred             HHhccccccEEEEEEeCCCCCChh--HHHHHHHHHh--cCCcEEEEEecCCCCChH
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMER--SQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~--~~~piilv~NK~Dl~~~~  219 (237)
                      |+..   +|++++|+|.++.-+..  ...+...+..  .+.|+++|+||+|+.+..
T Consensus        77 ~~~~---a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~  129 (185)
T d2atxa1          77 SYPM---TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP  129 (185)
T ss_dssp             GCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH
T ss_pred             cccc---cceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccch
Confidence            3332   89999999987532221  1233333332  368999999999997644

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.6e-15  Score=110.37  Aligned_cols=112  Identities=19%  Similarity=0.150  Sum_probs=69.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|.+|||||||+|++++........+..+..........   ...+.+|||+|....          ......++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~~~~~   70 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF----------RSLIPSYI   70 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchh----------ccchHHHh
Confidence            48999999999999999999987422222222222222222222   345789999996531          11222333


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~  217 (237)
                      ..   ++++++|+|.....+... ..++..+.   ..+.|+++|+||+|+..
T Consensus        71 ~~---~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~  119 (164)
T d1yzqa1          71 RD---SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD  119 (164)
T ss_dssp             TT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred             hc---cceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhh
Confidence            33   999999999875422222 23333322   24689999999999863

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-14  Score=108.86  Aligned_cols=113  Identities=15%  Similarity=0.141  Sum_probs=69.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|.+|||||||++++++........+..+.+....... .  ...+.+|||||....          ..+...+
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~~   73 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTRSY   73 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhH----------HHHHHHH
Confidence            36899999999999999999998742222222222222222222 2  347889999995431          1222333


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~  217 (237)
                      +..   +|++++|+|..+..+... ..++..+.   ....|+++|+||+|+..
T Consensus        74 ~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~  123 (166)
T d1z0fa1          74 YRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA  123 (166)
T ss_dssp             HHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             hcC---CcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchh
Confidence            333   899999999875322111 23333333   23688999999999853

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1e-15  Score=117.14  Aligned_cols=113  Identities=13%  Similarity=0.028  Sum_probs=69.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|.+|||||||+++|++........+..+.+........   ...+.+|||||.......          ...+ 
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----------~~~~-   71 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL----------GVAF-   71 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS----------CCGG-
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCccccccc----------cccc-
Confidence            58999999999999999999987422222233333333332222   346789999996542111          1111 


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHHh-------cCCcEEEEEecCCCCCh
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~piilv~NK~Dl~~~  218 (237)
                        ...++++++++|.....+... ..++..+..       .++|+++|+||+|+...
T Consensus        72 --~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~  126 (184)
T d1vg8a_          72 --YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR  126 (184)
T ss_dssp             --GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred             --ccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc
Confidence              223899999999865322111 233433322       25799999999998653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.5e-15  Score=113.09  Aligned_cols=113  Identities=14%  Similarity=0.119  Sum_probs=69.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..+|+++|.+|||||||++++.+........+..+.+........   ...+.+|||||...          +..+...+
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~   74 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER----------FRSVTRSY   74 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHTT
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchh----------hhhhHHHH
Confidence            368999999999999999999987321112222222222222211   34688999999542          12223333


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~  217 (237)
                      +.   .++++++|+|....-+... ..++..+.   ..+.|+++|+||+|+..
T Consensus        75 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  124 (174)
T d2bmea1          75 YR---GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA  124 (174)
T ss_dssp             ST---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             hh---hCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccc
Confidence            33   3999999999875322221 12222222   23689999999999753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=8.9e-15  Score=110.43  Aligned_cols=114  Identities=15%  Similarity=0.055  Sum_probs=69.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .++|+++|.+|||||||++++++........+..+.........  ....+.+||++|......          +...|+
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~   73 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA----------MREQYM   73 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS----------SHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecccccccccccccccccccccccccccc----------chhhhh
Confidence            36899999999999999999998732111112111111111111  245688999999654211          112233


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~  218 (237)
                      ..   +|++++|+|.++.-+... ..++..+.    ..+.|+++|+||+|+...
T Consensus        74 ~~---~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~  124 (169)
T d1x1ra1          74 RT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL  124 (169)
T ss_dssp             HH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred             hh---ccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhh
Confidence            22   999999999875322221 23333332    347899999999998654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.7e-15  Score=115.88  Aligned_cols=117  Identities=15%  Similarity=-0.019  Sum_probs=71.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..++|+++|.+|||||||+++|++........+..+..........  ...+.+||++|....          ..+...+
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~   73 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLRPLS   73 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG----------TTTGGGG
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccc----------hhhhhhc
Confidence            4479999999999999999999987422221222222222222222  355789999995431          1112222


Q ss_pred             HhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCChHH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~~~  220 (237)
                      +.   .+|++++|+|.++..+...  ..+...+..  .++|+++|+||+|+.....
T Consensus        74 ~~---~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~  126 (183)
T d1mh1a_          74 YP---QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD  126 (183)
T ss_dssp             CT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHH
T ss_pred             cc---ccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhh
Confidence            32   3899999999875322222  223333332  3689999999999865443

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.6e-14  Score=107.05  Aligned_cols=115  Identities=19%  Similarity=0.130  Sum_probs=71.7

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..+|+++|.+|||||||++++++...........+........   .....+.+||++|....         .......|
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~   72 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF---------RKSMVQHY   72 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHH---------HTTTHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhh---------ccccceee
Confidence            3689999999999999999999873222222333323222222   22456889999995320         11122334


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~  218 (237)
                      +..   +|++++|+|..+.-+... ..++..+..    .++|+++|+||+|+..+
T Consensus        73 ~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~  124 (165)
T d1z06a1          73 YRN---VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA  124 (165)
T ss_dssp             HTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred             ecC---CCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhc
Confidence            443   999999999876422222 234444432    36899999999998643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.8e-15  Score=110.84  Aligned_cols=113  Identities=13%  Similarity=0.033  Sum_probs=68.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ..+|+++|.+|||||||+|+++............+.+....... .  ...+.+|||+|....          ......+
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~~~~   75 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF----------RSLRTPF   75 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG----------HHHHGGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCccee----------hhhhhhh
Confidence            46899999999999999999998742222233333333332222 2  245789999996431          1111222


Q ss_pred             HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-------cCCcEEEEEecCCCCC
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~piilv~NK~Dl~~  217 (237)
                         ...++++++++|.....+... ..+++.+..       .+.|+++|+||+|+..
T Consensus        76 ---~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~  129 (174)
T d1wmsa_          76 ---YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE  129 (174)
T ss_dssp             ---GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred             ---hhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh
Confidence               223899999999875322211 233333321       2589999999999864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.4e-14  Score=108.99  Aligned_cols=112  Identities=13%  Similarity=0.081  Sum_probs=68.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|.+|||||||+++|..........+..+.+........   ...+.+|||+|....          ..+...++
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~~~~~   74 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALAPMYY   74 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGTHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhh----------hHHHHHHH
Confidence            58999999999999999999987422211222222222222222   244679999996531          12223333


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~  217 (237)
                      ..   ++++++|+|....-+... ..+...+.   ....|+++|+||+|+..
T Consensus        75 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~  123 (167)
T d1z0ja1          75 RG---SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD  123 (167)
T ss_dssp             TT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred             hh---ccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhcc
Confidence            33   899999999865322211 12222222   24689999999999853

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.8e-14  Score=107.79  Aligned_cols=111  Identities=17%  Similarity=0.171  Sum_probs=66.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce---EEEEEEE----------cCCeEEEEeCCCCCCcccchHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFK----------LGTKLCLVDLPGYGFAYAKEEVK  158 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t---~~~~~~~----------~~~~~~liDTpG~~~~~~~~~~~  158 (237)
                      ..+|+++|.+|||||||+++|++........+.++.+   ..+....          ....+.+|||||..         
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e---------   75 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE---------   75 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH---------
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcch---------
Confidence            3689999999999999999999763211111111111   0011100          12458899999942         


Q ss_pred             HHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHh-------cCCcEEEEEecCCCCC
Q 026538          159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-------SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-------~~~piilv~NK~Dl~~  217 (237)
                       .+..+...++..   +|++++|+|.+...  ....+..+...       ...|+++|+||+|+..
T Consensus        76 -~~~~~~~~~~~~---~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~  135 (186)
T d2f7sa1          76 -RFRSLTTAFFRD---AMGFLLMFDLTSQQ--SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD  135 (186)
T ss_dssp             -HHHHHHHHHHTT---CCEEEEEEETTCHH--HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred             -hhHHHHHHHHhc---CCEEEEEEeccccc--cceeeeeccchhhhhccCCCceEEEEeeeccchh
Confidence             233444455544   99999999987532  11222223221       2468999999999854

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.4e-15  Score=111.98  Aligned_cols=112  Identities=21%  Similarity=0.161  Sum_probs=69.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|.+|||||||+|+|.+...........+.+........   ...+.+|||||.....          .+...++
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~   77 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR----------TLTPSYY   77 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC----------CSHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhH----------HHHHHHH
Confidence            58999999999999999999987421222222222222222222   3568999999964311          1122233


Q ss_pred             hccccccEEEEEEeCCCCCChh-HHHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~piilv~NK~Dl~~  217 (237)
                      ..   +|++++|+|.+...+.. ...++..+..    ...|++++.||.|...
T Consensus        78 ~~---~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~  127 (177)
T d1x3sa1          78 RG---AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN  127 (177)
T ss_dssp             TT---CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred             hc---CCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc
Confidence            33   89999999977532211 1234444432    3578999999999864

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.53  E-value=1.4e-14  Score=114.49  Aligned_cols=112  Identities=21%  Similarity=0.293  Sum_probs=73.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccce-----------------------------eeccCCCCceEEE---EEEEcCCeE
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTI---NFFKLGTKL  140 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~-----------------------------~~~~~~~g~t~~~---~~~~~~~~~  140 (237)
                      .+|+++|..++|||||+.+|+...+.                             .......|.|.+.   .+...+..+
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i   83 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF   83 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCcee
Confidence            58999999999999999998632100                             0111223444333   233347789


Q ss_pred             EEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-------ChhHHHHHHHHHhcCC-cEEEEEec
Q 026538          141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQT-KYQVVLTK  212 (237)
Q Consensus       141 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-------~~~~~~~~~~l~~~~~-piilv~NK  212 (237)
                      +++||||+.+             +..........+|++++|+|+..+.       ..+..+.+..+...++ ++++++||
T Consensus        84 ~iiDtPGH~d-------------f~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK  150 (224)
T d1jnya3          84 TIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK  150 (224)
T ss_dssp             EECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred             EEeeCCCcHH-------------HHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEc
Confidence            9999999864             4555566666799999999999874       3344555555555565 58889999


Q ss_pred             CCCCC
Q 026538          213 TDTVF  217 (237)
Q Consensus       213 ~Dl~~  217 (237)
                      +|+..
T Consensus       151 ~D~~~  155 (224)
T d1jnya3         151 MDLTE  155 (224)
T ss_dssp             GGGSS
T ss_pred             ccCCC
Confidence            99874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=5.4e-15  Score=111.17  Aligned_cols=115  Identities=18%  Similarity=0.167  Sum_probs=67.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-cC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      .++|+++|.+|||||||+++|++........+..+.+....... .+  ..+.+|||||....          ..+...+
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~   71 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF----------RTITTAY   71 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGT----------SCCCHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhh----------HHHHHHH
Confidence            36899999999999999999998742222222322222222222 22  45778999995321          1112233


Q ss_pred             HhccccccEEEEEEeCCCCCChhHH-HHHHHH---HhcCCcEEEEEecCCCCChH
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRDH-ELISLM---ERSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l---~~~~~piilv~NK~Dl~~~~  219 (237)
                      +..   ++++++|+|.++.-+.... .+....   .....|++++.||.|+....
T Consensus        72 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~  123 (166)
T d1g16a_          72 YRG---AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV  123 (166)
T ss_dssp             HTT---EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC
T ss_pred             Hhc---CCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhh
Confidence            333   9999999998864222221 122222   22357899999999987543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.53  E-value=3.9e-14  Score=104.92  Aligned_cols=112  Identities=16%  Similarity=0.172  Sum_probs=70.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      .+|+++|++|||||||+|+|++.+ ........ .............+.+||+||....          ......++.. 
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~~~~-   67 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTI-GFNVETVEYKNISFTVWDVGGQDKI----------RPLWRHYFQN-   67 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHC-SSCCCCCS-SCCEEEEECSSCEEEEEECCCCGGG----------HHHHHHHTTT-
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC-CCccccce-eeEEEEEeeeeEEEEEecCCCcccc----------hhhhhhhhcc-
Confidence            389999999999999999999873 22211111 1122233334778999999997541          1222233333 


Q ss_pred             ccccEEEEEEeCCCCCChhH--HHHHHHHH---hcCCcEEEEEecCCCCChH
Q 026538          173 VSLKRVCLLIDTKWGVKPRD--HELISLME---RSQTKYQVVLTKTDTVFPI  219 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~~~~--~~~~~~l~---~~~~piilv~NK~Dl~~~~  219 (237)
                        ++++++++|.........  ..+.+.+.   ....|+++|+||+|+....
T Consensus        68 --~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~  117 (160)
T d1r8sa_          68 --TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM  117 (160)
T ss_dssp             --CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             --ceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc
Confidence              899999999875422222  12222222   2368999999999987543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.8e-14  Score=108.38  Aligned_cols=112  Identities=14%  Similarity=0.080  Sum_probs=67.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|.+|||||||++++++........+..+..........   ...+.+|||+|....          ..+...++
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~~   73 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF----------HALGPIYY   73 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CCSS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCccee----------cccchhhc
Confidence            58999999999999999999987422222222233333322222   356889999996431          12222223


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~  217 (237)
                      .   .+|++++|+|.+...+... ..+++.+.   ....|+++|+||+|+..
T Consensus        74 ~---~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~  122 (167)
T d1z08a1          74 R---DSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK  122 (167)
T ss_dssp             T---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred             c---CCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeecccccccc
Confidence            2   3899999999875422222 22332222   34678999999999854

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.3e-14  Score=109.42  Aligned_cols=112  Identities=15%  Similarity=0.077  Sum_probs=69.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE-Ec--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-KL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~-~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++|+++|.+|||||||+++|++........+..+.+...... ..  ...+.+|||||....          ..+...++
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~~   76 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPMYY   76 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhh----------hhhHHHHh
Confidence            589999999999999999999774222223333333222222 21  356889999996431          12233344


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~  217 (237)
                      ..   ++++++++|.....+... ..+...+..   .+.|+++|+||+|+..
T Consensus        77 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~  125 (170)
T d1r2qa_          77 RG---AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN  125 (170)
T ss_dssp             TT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             hC---cceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccc
Confidence            43   899999999765322211 223333322   3689999999999854

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.4e-14  Score=108.97  Aligned_cols=112  Identities=14%  Similarity=0.052  Sum_probs=68.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+|+++|.+|||||||+++++.........+..+.........  ....+.+||++|.....          .....|+.
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~~~~~   73 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----------AMRDLYMK   73 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----------THHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCccccc----------cccccccc
Confidence            5899999999999999999998742111122111111111111  13558999999975421          11223333


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                      .   +|++++|+|..+..+... ..++..+.    ..+.|+++|+||+|+..
T Consensus        74 ~---~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~  122 (167)
T d1c1ya_          74 N---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED  122 (167)
T ss_dssp             H---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred             c---cceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCccc
Confidence            3   899999999876422222 23333332    23689999999999863

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=3.7e-14  Score=113.36  Aligned_cols=131  Identities=19%  Similarity=0.207  Sum_probs=77.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccccee-----------------------------eccCCCCceEEE---EEEEcCCe
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTI---NFFKLGTK  139 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~-----------------------------~~~~~~g~t~~~---~~~~~~~~  139 (237)
                      .++|+++|+.++|||||+.+|+...+..                             ......|.|.+.   .+...+..
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~  103 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR  103 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccce
Confidence            3589999999999999999995321100                             001112222221   22233567


Q ss_pred             EEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-------ChhHHHHHHHHHhcCCc-EEEEEe
Q 026538          140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVLT  211 (237)
Q Consensus       140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-------~~~~~~~~~~l~~~~~p-iilv~N  211 (237)
                      +.++||||+.+             +..........+|++++|+|+..+.       ..+..+.+..+...++| +++++|
T Consensus       104 i~~iDtPGH~d-------------f~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iN  170 (245)
T d1r5ba3         104 FSLLDAPGHKG-------------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN  170 (245)
T ss_dssp             EEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred             eeeeccccccc-------------chhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEE
Confidence            99999999753             4444555556699999999998764       33567777777777776 889999


Q ss_pred             cCCCCC----hHHHHHHHHHHHHHHHhh
Q 026538          212 KTDTVF----PIDVARRAMQIEEVIFYL  235 (237)
Q Consensus       212 K~Dl~~----~~~~~~~~~~l~~~l~~~  235 (237)
                      |+|+..    +....+..+.+...+..+
T Consensus       171 KmD~~~~~~~e~~~~ei~~~l~~~l~~i  198 (245)
T d1r5ba3         171 KMDEPSVQWSEERYKECVDKLSMFLRRV  198 (245)
T ss_dssp             CTTSTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence            999863    233445555555554443

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.2e-14  Score=108.52  Aligned_cols=111  Identities=16%  Similarity=0.090  Sum_probs=66.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE-Ec--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-KL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~-~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|++|||||||++++++........+..+.+...... ..  ...+.+||++|.....          .+...++
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~~~~~~   73 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR----------SITRSYY   73 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTS----------CCCHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchh----------hHHHHHh
Confidence            589999999999999999999874222222222222222222 12  3568999999964321          1122223


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTV  216 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~  216 (237)
                      ..   +|++++|+|..+..+... ..++..+..   .++|+++|+||+|+.
T Consensus        74 ~~---~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~  121 (173)
T d2a5ja1          74 RG---AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE  121 (173)
T ss_dssp             TT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             hc---cCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchh
Confidence            22   899999999875322211 233333322   368999999999974

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-14  Score=112.03  Aligned_cols=111  Identities=14%  Similarity=0.078  Sum_probs=68.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE--EEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~--~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      ++|+++|.+|||||||++++++...  .....+.....  ......  ...+.+|||+|....          ..+...+
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~~   71 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY----------DRLRPLS   71 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTGGGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC--CCCcCCceeeecceeEeeCCceeeeeccccccchhh----------hhhhhhc
Confidence            5899999999999999999998732  12222211111  111112  346889999996431          1122233


Q ss_pred             HhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~  218 (237)
                      +.   .+|++++|+|.++.-+...  ..+...+..  .+.|+++|+||+|+...
T Consensus        72 ~~---~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~  122 (191)
T d2ngra_          72 YP---QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD  122 (191)
T ss_dssp             CT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGC
T ss_pred             cc---ccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEecccccccc
Confidence            33   3899999999876422222  123333332  36899999999998643

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=3.8e-15  Score=112.84  Aligned_cols=111  Identities=16%  Similarity=0.146  Sum_probs=50.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~  166 (237)
                      ..+|+++|.+|||||||+++|++...  .....+..+.+.  .... .  ...+.+|||||...          +..+..
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~----------~~~~~~   73 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAF--NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITT   73 (173)
T ss_dssp             EEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCC--CCccCccccceEEEEEEEECCEEEEEEEEECCCchh----------hHHHHH
Confidence            46899999999999999999997631  111112222222  1111 2  34578899999542          112222


Q ss_pred             HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~  217 (237)
                      .++   ..+|++++|+|++++.+... ..+...+.   ..+.|+++|+||+|+..
T Consensus        74 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~  125 (173)
T d2fu5c1          74 AYY---RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND  125 (173)
T ss_dssp             TTT---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred             Hhc---cCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchh
Confidence            222   33899999999876432222 22223332   23689999999999874

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.49  E-value=1.1e-13  Score=104.59  Aligned_cols=115  Identities=18%  Similarity=0.193  Sum_probs=73.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      ..+|+++|.+|||||||+|+|.+. .........+.+. ......+..+.++|++|.......          ...+...
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~----------~~~~~~~   82 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMN-EVVHTSPTIGSNV-EEIVINNTRFLMWDIGGQESLRSS----------WNTYYTN   82 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT-SCEEEECCSCSSC-EEEEETTEEEEEEECCC----CGG----------GHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC-CCCccccccceeE-EEEeecceEEEEeccccccccccc----------hhhhhcc
Confidence            369999999999999999999998 4455555544333 334445788999999996542111          1122222


Q ss_pred             cccccEEEEEEeCCCCCChhHH-HHHHHH----HhcCCcEEEEEecCCCCChHHH
Q 026538          172 RVSLKRVCLLIDTKWGVKPRDH-ELISLM----ERSQTKYQVVLTKTDTVFPIDV  221 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~~-~~~~~l----~~~~~piilv~NK~Dl~~~~~~  221 (237)
                         ++.+++++|.++....... ......    .....|+++|+||+|+......
T Consensus        83 ---~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  134 (177)
T d1zj6a1          83 ---TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV  134 (177)
T ss_dssp             ---CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH
T ss_pred             ---ceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcH
Confidence               8999999998754333221 111111    1247899999999998754433

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=2.8e-13  Score=111.13  Aligned_cols=125  Identities=19%  Similarity=0.249  Sum_probs=80.1

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce--EEEEEEE---------------------------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFK---------------------------------  135 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t--~~~~~~~---------------------------------  135 (237)
                      ..|.|+|+|..++|||||+|+|+|. .+.+.+..+.|.  ..+.+..                                 
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~-~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGR-DFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTS-CCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCC-CcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHh
Confidence            5689999999999999999999998 333333333210  0111100                                 


Q ss_pred             -------------------cCCeEEEEeCCCCCCcc---cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-
Q 026538          136 -------------------LGTKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-  192 (237)
Q Consensus       136 -------------------~~~~~~liDTpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-  192 (237)
                                         .-..+.++||||+....   ...........++..|+...  .+++++|.++...+.... 
T Consensus       104 ~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~--~~~il~v~~a~~~~~~~~~  181 (299)
T d2akab1         104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKE--NCLILAVSPANSDLANSDA  181 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTST--TEEEEEEEESSSCGGGCHH
T ss_pred             hCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCc--cceeeeecccccchhhhHH
Confidence                               12348999999987532   12222334456666666541  345666777765555444 


Q ss_pred             HHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          193 HELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       193 ~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      ..+.+.+.....++++|+||+|+.++
T Consensus       182 ~~~~~~~~~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         182 LKIAKEVDPQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHHHCTTCSSEEEEEECGGGSCT
T ss_pred             HHHHHHhCcCCCceeeEEeccccccc
Confidence            45666676777899999999999865

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.6e-14  Score=106.96  Aligned_cols=114  Identities=17%  Similarity=0.181  Sum_probs=66.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceee-ccCCCCceEEE-EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR-TSDKPGLTQTI-NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~-~~~~~g~t~~~-~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      .++|+++|.+|||||||++++++...... .....+.+... .+...+  ..+.+|||||...          +..+...
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~----------~~~~~~~   75 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER----------FRSVTHA   75 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------C
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchh----------hHHHHHH
Confidence            36899999999999999999988732111 11222223222 222223  4678999999643          1222233


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHH-H--hcCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E--RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~--~~~~piilv~NK~Dl~~~  218 (237)
                      ++..   +|++++|+|.....+... ..+...+ .  ....|+++|.||+|+...
T Consensus        76 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~  127 (170)
T d2g6ba1          76 YYRD---AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE  127 (170)
T ss_dssp             CGGG---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred             hhcC---CceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhc
Confidence            3333   899999999875322211 1222212 2  236789999999998753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-13  Score=104.98  Aligned_cols=106  Identities=11%  Similarity=0.060  Sum_probs=66.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ..+|+++|.+|||||||++++++.. .....+..+.+....+...+  ..+.+|||+|...           ..    |+
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~-f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~-----------~~----~~   68 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----------AK----FS   68 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSC-CCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCC-----------HH----HH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCC-CCCcCCccceeEEEEeecCceEEEEEEeecccccc-----------cc----cc
Confidence            3699999999999999999999884 22222222222111222223  5688999999643           11    22


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHH------hcCCcEEEEEecCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME------RSQTKYQVVLTKTDTV  216 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~------~~~~piilv~NK~Dl~  216 (237)
                      ..   +|++++|+|.++.-+... ..+..++.      ....|+++|+||.|+.
T Consensus        69 ~~---ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d  119 (175)
T d2bmja1          69 GW---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  119 (175)
T ss_dssp             HH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCC
T ss_pred             cc---cceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcc
Confidence            22   899999999875422222 23344432      2357899999998874

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=5.3e-14  Score=107.12  Aligned_cols=112  Identities=17%  Similarity=0.093  Sum_probs=66.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+|+++|.+|||||||+++++.........+..+..........  ...+.+|||+|.....          .....++.
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~~~~   72 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD----------NVRPLSYP   72 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGT----------TTGGGGCT
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeecccccccccccc----------ccccchhh
Confidence            48999999999999999999987321111111111111112111  3557899999964310          11112222


Q ss_pred             ccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF  217 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~  217 (237)
                         .+|++++|+|..+..+-..  ..+...+..  .+.|+++|+||+|+..
T Consensus        73 ---~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~  120 (179)
T d1m7ba_          73 ---DSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT  120 (179)
T ss_dssp             ---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred             ---hhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccc
Confidence               3899999999875422111  123333322  3789999999999853

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=3.3e-14  Score=107.16  Aligned_cols=111  Identities=14%  Similarity=0.090  Sum_probs=69.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      .+|+++|.+|||||||++++++........+..+...... +..  ....+.+|||+|....          ..+...++
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~----------~~~~~~~~   73 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPMYY   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhH----------HHHHHHHH
Confidence            5899999999999999999998742222233333222221 222  2357999999996431          11223333


Q ss_pred             hccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCC
Q 026538          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTV  216 (237)
Q Consensus       170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~  216 (237)
                      ..   +|++++|+|..+..+... ..+.....   ....|+++|+||+|+.
T Consensus        74 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~  121 (170)
T d1ek0a_          74 RN---AQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDML  121 (170)
T ss_dssp             TT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             hc---cceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccc
Confidence            33   899999999875322222 12222222   2357899999999974

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.46  E-value=3.4e-13  Score=111.01  Aligned_cols=123  Identities=20%  Similarity=0.266  Sum_probs=73.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE------------------------------------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF------------------------------------  134 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~------------------------------------  134 (237)
                      ..|.|+|+|..++|||||+|+|+|.. +.+++..+. |+.....                                    
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLlG~~-~lP~~~~~~-T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIVGRD-FLPRGSGIV-TRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSC-CCCC---------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHhCCC-CCCCCCCcc-ccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHH
Confidence            46899999999999999999999983 323333221 1111000                                    


Q ss_pred             ---------------------------EcCCeEEEEeCCCCCCcccch---HHHHHHHHHHHHHHhccccccEEE-EEEe
Q 026538          135 ---------------------------KLGTKLCLVDLPGYGFAYAKE---EVKDAWEELVKEYVSTRVSLKRVC-LLID  183 (237)
Q Consensus       135 ---------------------------~~~~~~~liDTpG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~v~-~vvd  183 (237)
                                                 ..-..+.+|||||+......+   ........++..|+..   ++.++ +|++
T Consensus       101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~---~~~~il~v~~  177 (306)
T d1jwyb_         101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTP  177 (306)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhC---CCceeEEeec
Confidence                                       012348999999987542221   1223344566666665   66644 4456


Q ss_pred             CCCCC-ChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538          184 TKWGV-KPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       184 ~~~~~-~~~~~~~~~~l~~~~~piilv~NK~Dl~~~  218 (237)
                      +...+ ......+.+.+.....++++|+||+|....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         178 ANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDK  213 (306)
T ss_dssp             SSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCS
T ss_pred             ccccccccHHHHHHHHhCcCCCeEEEEEeccccccc
Confidence            55433 334456666666667899999999998744

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.3e-13  Score=104.18  Aligned_cols=113  Identities=19%  Similarity=0.139  Sum_probs=66.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCc-----eEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-----TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~-----t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~  167 (237)
                      ++|+++|.+|||||||++++++... ......+.+     +..+........+.+||+||...   .+    .+  +...
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g---~e----~~--~~~~   73 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHD-SMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG---EN----EW--LHDH   73 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCC-TTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH---HH----HH--HHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcC-CccccccceeeecceeeeccCCceeeeeeeccccccc---cc----cc--cccc
Confidence            6899999999999999999997632 111211111     11121111244578999987431   11    11  1222


Q ss_pred             HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~  218 (237)
                      |   ...+|++++|+|.++..+... ..+...+..    .++|+++|+||+|+...
T Consensus        74 ~---~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~  126 (172)
T d2g3ya1          74 C---MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC  126 (172)
T ss_dssp             C---CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG
T ss_pred             c---ccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEecccccccc
Confidence            2   234899999999875322211 233333332    36899999999998643

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.46  E-value=3.2e-13  Score=109.57  Aligned_cols=62  Identities=34%  Similarity=0.641  Sum_probs=44.1

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY  152 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~  152 (237)
                      ....+|+++|.||||||||+|+|.+. ..+.+++.||+|++......+..+.++||||+..+.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~-~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi~~p~  171 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPK  171 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSC
T ss_pred             CCceEEEEEecCccchhhhhhhhhcc-ceEEECCcccccccceEEECCCCeEEecCCCccccC
Confidence            45679999999999999999999999 668899999999999888888999999999987653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=1.1e-12  Score=97.08  Aligned_cols=109  Identities=18%  Similarity=0.180  Sum_probs=70.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (237)
                      +|+++|++|||||||+|+|.+. ......+..+.+... ....+..+.++|++|......          ....+   ..
T Consensus         2 KI~liG~~nvGKSSLln~l~~~-~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~---~~   66 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND-RLATLQPTWHPTSEE-LAIGNIKFTTFDLGGHIQARR----------LWKDY---FP   66 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS-CCCCCCCCCSCEEEE-ECCTTCCEEEEECCCSGGGGG----------GGGGG---CT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CCCeeeceeeEeEEE-eccCCeeEEEEeeccchhhhh----------hHhhh---hh
Confidence            7999999999999999999998 445555555544432 223467799999999643111          11111   22


Q ss_pred             cccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538          174 SLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF  217 (237)
Q Consensus       174 ~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~  217 (237)
                      .++.+++++|.+....... ..+.....    ..+.|+++++||.|+..
T Consensus        67 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~  115 (166)
T d2qtvb1          67 EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN  115 (166)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS
T ss_pred             heeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc
Confidence            3899999999875432222 11222221    23689999999999864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.35  E-value=3.9e-12  Score=94.49  Aligned_cols=114  Identities=18%  Similarity=0.114  Sum_probs=71.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      ..+|+++|.+|||||||+|++++.. .....+..+. ........+..+.++|++|.......          .   ...
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~   69 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGE-VVTTIPTIGF-NVETVTYKNLKFQVWDLGGLTSIRPY----------W---RCY   69 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSE-EEEEEEETTEEEEEEEECCCGGGGGG----------G---GGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCC-Ccceecccce-eeeeeccCceEEEEeecccccccccc----------c---hhh
Confidence            3689999999999999999999984 2332222222 22233445778999999996542110          1   111


Q ss_pred             cccccEEEEEEeCCCCCChhH-HH-HHHHH---HhcCCcEEEEEecCCCCChHH
Q 026538          172 RVSLKRVCLLIDTKWGVKPRD-HE-LISLM---ERSQTKYQVVLTKTDTVFPID  220 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~-~~-~~~~l---~~~~~piilv~NK~Dl~~~~~  220 (237)
                      ...++.+++++|......... .. +....   .....|+++|+||.|+.....
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~  123 (169)
T d1upta_          70 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT  123 (169)
T ss_dssp             CTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred             hhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc
Confidence            233789999999765433322 12 22222   223678999999999976443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=3e-13  Score=112.04  Aligned_cols=84  Identities=23%  Similarity=0.224  Sum_probs=45.2

Q ss_pred             EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE-----E----------------------cCCeEEEEeCC
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-----K----------------------LGTKLCLVDLP  146 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~-----~----------------------~~~~~~liDTp  146 (237)
                      +|+++|.||||||||+|+|++.+  ..++++|+||.+.+..     .                      ....+.++|+|
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~--~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC--CchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            79999999999999999999984  6789999988764211     0                      01348999999


Q ss_pred             CCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538          147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (237)
Q Consensus       147 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~  185 (237)
                      |+.......      ..+...++.....+|++++|+|++
T Consensus        80 Gli~ga~~g------~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          80 GLVPGAHEG------RGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             ---------------------CCCSSTTCSEEEEEEETT
T ss_pred             Ccccchhcc------cchHHHHHHhhccceEEEEEeccc
Confidence            986532221      245566777778899999999976

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.26  E-value=1.4e-11  Score=92.88  Aligned_cols=113  Identities=16%  Similarity=0.123  Sum_probs=66.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ...+|+++|.+|||||||+|+|++.. .....+..+.+... ....+..+..+|++|........             ..
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~   76 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEE-LTIAGMTFTTFDLGGHIQARRVW-------------KN   76 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEE-EEETTEEEEEEEECC----CCGG-------------GG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC-CcceecccccceeE-EEecccccccccccchhhhhhHH-------------hh
Confidence            34699999999999999999999883 33333333333322 23346678899999865421111             11


Q ss_pred             ccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~  218 (237)
                      .....+.+++++|......... ........    ..+.|+++++||.|+...
T Consensus        77 ~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~  129 (186)
T d1f6ba_          77 YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA  129 (186)
T ss_dssp             GGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC
T ss_pred             hhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc
Confidence            1223899999999765322221 11111111    236899999999998643

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.23  E-value=1.7e-12  Score=106.37  Aligned_cols=89  Identities=17%  Similarity=0.186  Sum_probs=63.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--EEc------------------CCeEEEEeCCCCCC
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL------------------GTKLCLVDLPGYGF  150 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~~~------------------~~~~~liDTpG~~~  150 (237)
                      ...+|.++|.||||||||+|+|++. ..+.++++|+||.+.+.  ...                  ...+.++|.||+..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~-~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCC-CCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            4469999999999999999999987 33567899999976422  111                  23589999999765


Q ss_pred             cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCC
Q 026538          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  186 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~  186 (237)
                      ......      .+-..++.....+|++++|+|+..
T Consensus        88 gA~~g~------GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGV------GLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSS------SSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccc------ccHHHHHHHhhccceeEEEEeccC
Confidence            432221      122344555555999999999754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=5.5e-12  Score=96.75  Aligned_cols=108  Identities=19%  Similarity=0.188  Sum_probs=64.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      .++|+++|.+|||||||++++.-.   ....++.|.. ...+...+..+.+||++|....          ......+   
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f~---~~~~pTiG~~-~~~~~~~~~~~~~~D~~gq~~~----------~~~~~~~---   64 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRII---HGQDPTKGIH-EYDFEIKNVPFKMVDVGGQRSE----------RKRWFEC---   64 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH---HSCCCCSSEE-EEEEEETTEEEEEEEECC-----------------CTTS---
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC---CCCCCeeeeE-EEEEeeeeeeeeeecccceeee----------ccccccc---
Confidence            469999999999999999999322   1122233322 1233445778999999996421          1111122   


Q ss_pred             cccccEEEEEEeCCCCCCh--------hH---HHHHHHHH----hcCCcEEEEEecCCCC
Q 026538          172 RVSLKRVCLLIDTKWGVKP--------RD---HELISLME----RSQTKYQVVLTKTDTV  216 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~--------~~---~~~~~~l~----~~~~piilv~NK~Dl~  216 (237)
                      ...++++++++|.+.....        ..   ..++..+.    ..+.|+++|+||+|+.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  124 (200)
T d1zcba2          65 FDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL  124 (200)
T ss_dssp             CTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             ccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence            2238899999997653221        11   12222221    2478999999999985

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.22  E-value=1.7e-12  Score=105.49  Aligned_cols=85  Identities=24%  Similarity=0.261  Sum_probs=56.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE--c------------------CCeEEEEeCCCCCCcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L------------------GTKLCLVDLPGYGFAY  152 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~--~------------------~~~~~liDTpG~~~~~  152 (237)
                      .+|.+||.||||||||+|+|++..  +...++|+||.+.+...  .                  ...+.++|.||+....
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~--~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCC--CccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            589999999999999999999984  57788888887653211  1                  2348899999986532


Q ss_pred             cchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~  185 (237)
                      +..      ..+-..|++..+.+|++++|+|++
T Consensus        81 ~~g------~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          81 SKG------EGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHH------GGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             ccC------CCccHHHHHHHHhccceEEEeecc
Confidence            211      122334555556699999999874

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.21  E-value=3.8e-11  Score=94.61  Aligned_cols=79  Identities=19%  Similarity=0.188  Sum_probs=48.1

Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHH-----HHHhcCCcEEEEEec
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-----LMERSQTKYQVVLTK  212 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~-----~l~~~~~piilv~NK  212 (237)
                      ..+.++|+||+.+....       ...... +......+.+++++|+.....+.......     .......|.++|+||
T Consensus        95 ~~~~~id~~g~~~~~~~-------~~~~~~-~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK  166 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLF-------HEFGVR-LMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNK  166 (244)
T ss_dssp             CSEEEEECCSSHHHHHH-------SHHHHH-HHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECC
T ss_pred             cceeeeccccchhHHHH-------HHHHHH-HHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeec
Confidence            34899999997532100       011111 11122367899999988766665532221     123457899999999


Q ss_pred             CCCCChHHHHHH
Q 026538          213 TDTVFPIDVARR  224 (237)
Q Consensus       213 ~Dl~~~~~~~~~  224 (237)
                      +|+...++....
T Consensus       167 ~D~~~~~~~~~~  178 (244)
T d1yrba1         167 VDLLSEEEKERH  178 (244)
T ss_dssp             GGGCCHHHHHHH
T ss_pred             cccccHHHHHHH
Confidence            999987765443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=6.9e-12  Score=98.37  Aligned_cols=108  Identities=13%  Similarity=0.178  Sum_probs=67.4

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      .+|+++|..|||||||++.+...+    ..+.-|... ..+...+..+.+||++|....      ...|.    .++   
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~-~~~~~~~~~~~~~D~~Gq~~~------r~~w~----~~~---   68 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFE-TKFQVDKVNFHMFDVGGQRDE------RRKWI----QCF---   68 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEE-EEEEETTEEEEEEECCCSTTT------TTGGG----GGC---
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEE-EEEEECcEEEEEEecCcccee------ccchh----hhc---
Confidence            599999999999999999997652    123333322 223345788999999996531      11111    122   


Q ss_pred             ccccEEEEEEeCCCCC--------ChhHHHH---HHHHH----hcCCcEEEEEecCCCCCh
Q 026538          173 VSLKRVCLLIDTKWGV--------KPRDHEL---ISLME----RSQTKYQVVLTKTDTVFP  218 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~--------~~~~~~~---~~~l~----~~~~piilv~NK~Dl~~~  218 (237)
                      ..++++++++|.+...        .....+.   +..+.    ..++|+++++||+|+...
T Consensus        69 ~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          69 NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             TTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             ccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence            2389999999976311        1111222   22222    136899999999998643

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=8.2e-11  Score=89.44  Aligned_cols=104  Identities=15%  Similarity=0.151  Sum_probs=65.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      .+|+++|..|||||||+++|...+. .    ..| .....+......+.+|||+|....          ..+...|+.. 
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~~~-~----t~~-~~~~~~~~~~~~~~i~D~~Gq~~~----------~~~~~~~~~~-   65 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKIIHE-A----GTG-IVETHFTFKDLHFKMFDVGGQRSE----------RKKWIHCFEG-   65 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHS-C----CCS-EEEEEEEETTEEEEEEEECCSGGG----------GGGGGGGCTT-
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-C----Ccc-EEEEEEEeeeeeeeeecccccccc----------ccchhhcccC-
Confidence            5899999999999999999986631 1    111 122234445778999999996431          1222233333 


Q ss_pred             ccccEEEEEEeCCCC--CCh------hHH----HHHHHHH---hcCCcEEEEEecCCC
Q 026538          173 VSLKRVCLLIDTKWG--VKP------RDH----ELISLME---RSQTKYQVVLTKTDT  215 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~--~~~------~~~----~~~~~l~---~~~~piilv~NK~Dl  215 (237)
                        ++++++++|....  +..      ...    .+...+.   ..+.|+++|+||+|+
T Consensus        66 --~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~  121 (195)
T d1svsa1          66 --VTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL  121 (195)
T ss_dssp             --CSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred             --CceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchh
Confidence              8999999986532  111      111    1222221   236899999999986

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=6.4e-11  Score=90.41  Aligned_cols=108  Identities=14%  Similarity=0.192  Sum_probs=67.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (237)
                      .+|+++|..|||||||++++...+. . ..++-|... ..+......+.+|||+|....          ......++.  
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~~-~-~~pTiG~~~-~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~~~--   67 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIHG-S-GVPTTGIIE-YPFDLQSVIFRMVDVGGQRSE----------RRKWIHCFE--   67 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTS-S-CCCCCSCEE-EEEECSSCEEEEEECCCSTTG----------GGGGGGGCS--
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC-C-CCceeeEEE-EEEeccceeeeeccccccccc----------ccccccccc--
Confidence            5899999999999999999987632 2 222223221 123334778999999996531          111122222  


Q ss_pred             ccccEEEEEEeCCCCCC--------hh----HHHHHHHHHh---cCCcEEEEEecCCCC
Q 026538          173 VSLKRVCLLIDTKWGVK--------PR----DHELISLMER---SQTKYQVVLTKTDTV  216 (237)
Q Consensus       173 ~~~d~v~~vvd~~~~~~--------~~----~~~~~~~l~~---~~~piilv~NK~Dl~  216 (237)
                       .++.+++++|.+....        ..    ...+...+..   .+.|+++|+||+|+.
T Consensus        68 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~  125 (200)
T d2bcjq2          68 -NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL  125 (200)
T ss_dssp             -SCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHH
T ss_pred             -ccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhh
Confidence             3899999999754211        01    1223333332   378999999999974

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=1.1e-10  Score=91.04  Aligned_cols=58  Identities=33%  Similarity=0.383  Sum_probs=42.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccce--eecc----CCCCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGV--VRTS----DKPGLTQTINFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~--~~~~----~~~g~t~~~~~~~~~~~~~liDTpG~~~  150 (237)
                      ...+++|.+|||||||+|+|.+....  ..++    ....||+....+.....-.++||||+.+
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~r~  159 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN  159 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCcEEEeCCcccc
Confidence            47899999999999999999986321  1112    2344788888887766689999999865

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=4.1e-09  Score=86.83  Aligned_cols=121  Identities=20%  Similarity=0.201  Sum_probs=68.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc-----ceeeccCCCCceEE-------------------EEEEE-----------
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQT-------------------INFFK-----------  135 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~~~g~t~~-------------------~~~~~-----------  135 (237)
                      +.++|.|.|+||||||||+++|....     .++....-|.++.+                   +....           
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~  132 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS  132 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccch
Confidence            46799999999999999999997421     22222222221110                   00000           


Q ss_pred             ------------cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC--CChhHHHHHHHHHh
Q 026538          136 ------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER  201 (237)
Q Consensus       136 ------------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~  201 (237)
                                  .|+.+.++.|.|.+..    +.     .+.       ..+|.+++|+++..+  ++....-+++    
T Consensus       133 ~~~~~~~~~~~~~g~d~iliEtvG~gq~----e~-----~i~-------~~aD~~l~v~~P~~Gd~iq~~k~gi~e----  192 (327)
T d2p67a1         133 QRARELMLLCEAAGYDVVIVETVGVGQS----ET-----EVA-------RMVDCFISLQIAGGGDDLQGIKKGLME----  192 (327)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEEECCTTH----HH-----HHH-------TTCSEEEEEECC------CCCCHHHHH----
T ss_pred             hhhhHHHHHHHhcCCCeEEEeecccccc----ch-----hhh-------hccceEEEEecCCCchhhhhhchhhhc----
Confidence                        1456788888886531    00     111       128999999876543  1222222322    


Q ss_pred             cCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538          202 SQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF  233 (237)
Q Consensus       202 ~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~  233 (237)
                        ++-++|+||+|+............+...+.
T Consensus       193 --~aDi~VvNKaD~~~~~~~~~~~~~~~~al~  222 (327)
T d2p67a1         193 --VADLIVINKDDGDNHTNVAIARHMYESALH  222 (327)
T ss_dssp             --HCSEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred             --cccEEEEEeecccchHHHHHHHHHHHHHhh
Confidence              355899999999887776666666665544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.78  E-value=6.3e-10  Score=86.92  Aligned_cols=57  Identities=32%  Similarity=0.505  Sum_probs=35.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhccccee--eccC----CCCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVV--RTSD----KPGLTQTINFFKLGTKLCLVDLPGYGF  150 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~--~~~~----~~g~t~~~~~~~~~~~~~liDTpG~~~  150 (237)
                      ...+++|.+|||||||+|+|++.....  .++.    ...||+....+..+. -.++||||+.+
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g-g~iiDTPG~r~  160 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG-GLVADTPGFSS  160 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT-EEEESSCSCSS
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC-CEEEECCcccc
Confidence            477899999999999999999873211  1221    122565554444443 46889999866

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=2.9e-07  Score=71.47  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=22.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|.++|.|..|||||||+|.++..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4578899999999999999999864

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.49  E-value=3.1e-07  Score=70.58  Aligned_cols=74  Identities=18%  Similarity=0.172  Sum_probs=39.0

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +..+.||||||................+...    . ..+-+++|+++..+... ...........+ +--+++||.|..
T Consensus        94 ~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~----~-~~~~~~LVl~a~~~~~~-~~~~~~~~~~~~-~~~lI~TKlDet  166 (211)
T d1j8yf2          94 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEA----I-KPDEVTLVIDASIGQKA-YDLASKFNQASK-IGTIIITKMDGT  166 (211)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHH----H-CCSEEEEEEEGGGGGGH-HHHHHHHHHHCT-TEEEEEECTTSC
T ss_pred             CCceEEEecCCcCccchhhHHHHHHHHHHhh----c-CCceEEEEEecccCcch-HHHHhhhhcccC-cceEEEecccCC
Confidence            4579999999964211111111112222221    1 15788999998754322 223333333333 345779999976


Q ss_pred             C
Q 026538          217 F  217 (237)
Q Consensus       217 ~  217 (237)
                      .
T Consensus       167 ~  167 (211)
T d1j8yf2         167 A  167 (211)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.40  E-value=4.1e-07  Score=74.51  Aligned_cols=24  Identities=29%  Similarity=0.464  Sum_probs=21.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ..++|.|.|+||+|||||+++|..
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHH
Confidence            457999999999999999999985

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=1e-06  Score=67.64  Aligned_cols=75  Identities=16%  Similarity=0.195  Sum_probs=38.4

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc-ccccEEEEEEeCCCCCChhH-HHHHHHHHhcCCcEEEEEecCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR-VSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTD  214 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~piilv~NK~D  214 (237)
                      +..+.||||||....  .......+..+........ ...+-+++|+|+..+  ..+ .+........ .+--+++||.|
T Consensus        93 ~~d~ilIDTaGr~~~--d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-~~~~lI~TKlD  167 (213)
T d1vmaa2          93 NKDVVIIDTAGRLHT--KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-NVTGIILTKLD  167 (213)
T ss_dssp             TCSEEEEEECCCCSC--HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-CCCEEEEECGG
T ss_pred             CCCEEEEeccccccc--hHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc-CCceEEEeccc
Confidence            456899999996532  1111222222222211111 124678999998643  222 2233333333 34567789999


Q ss_pred             CC
Q 026538          215 TV  216 (237)
Q Consensus       215 l~  216 (237)
                      ..
T Consensus       168 e~  169 (213)
T d1vmaa2         168 GT  169 (213)
T ss_dssp             GC
T ss_pred             CC
Confidence            64

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.29  E-value=2.1e-06  Score=65.67  Aligned_cols=76  Identities=21%  Similarity=0.226  Sum_probs=40.0

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH-hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV-STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT  215 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl  215 (237)
                      +..+.||||||....  .....+.+..+.+..- ......+-+++|+|+..+. ....+........+ +--+++||.|.
T Consensus        88 ~~d~ilIDTaGr~~~--d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~-~~~~~~~~~~~~~~-~~~lI~TKlDe  163 (207)
T d1okkd2          88 GYDLLFVDTAGRLHT--KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ-NGLEQAKKFHEAVG-LTGVIVTKLDG  163 (207)
T ss_dssp             TCSEEEECCCCCCTT--CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT-HHHHHHHHHHHHHC-CSEEEEECTTS
T ss_pred             CCCEEEcCccccchh--hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc-hHHHHHHHhhhccC-CceEEEeccCC
Confidence            467999999996532  1111222222222111 1112257789999987653 22233333333333 33567899997


Q ss_pred             C
Q 026538          216 V  216 (237)
Q Consensus       216 ~  216 (237)
                      .
T Consensus       164 t  164 (207)
T d1okkd2         164 T  164 (207)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.29  E-value=2.8e-06  Score=64.98  Aligned_cols=71  Identities=23%  Similarity=0.214  Sum_probs=38.3

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~  216 (237)
                      +..+.||||||....  .......+..+...     ...+-+++|+|+..+  .............-..--+++||.|..
T Consensus        92 ~~d~vlIDTaGr~~~--d~~~~~el~~~~~~-----~~~~~~llv~~a~~~--~~~~~~~~~f~~~~~~~~~I~TKlDe~  162 (207)
T d1ls1a2          92 ARDLILVDTAGRLQI--DEPLMGELARLKEV-----LGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLDGD  162 (207)
T ss_dssp             TCCEEEEECCCCSSC--CHHHHHHHHHHHHH-----HCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCCEEEEECGGGC
T ss_pred             cCcceeecccccchh--hhhhHHHHHHHHhh-----cCCceEEEEeccccc--hhHHHHHHHHHhhCCCCeeEEeecCcc
Confidence            457999999996542  11122222332221     126889999998754  333333333222112335778999864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=3.5e-06  Score=64.48  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=38.9

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh-ccccccEEEEEEeCCCCCChhH-HHHHHHHHhcCCcEEEEEecCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS-TRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTD  214 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~piilv~NK~D  214 (237)
                      +..+.||||||....  .....+.+..+.+..-. .....+-+++|+|+..+  ... .......... .+--+++||.|
T Consensus        91 ~~d~ilIDTaGr~~~--d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-~~~~lIlTKlD  165 (211)
T d2qy9a2          91 NIDVLIADTAGRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV-GLTGITLTKLD  165 (211)
T ss_dssp             TCSEEEECCCCCGGG--HHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHS-CCCEEEEECCT
T ss_pred             CCCEEEeccCCCccc--cHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhcc-CCceEEEeecC
Confidence            456899999996431  11112222333222111 11124678999998754  222 2333333333 34567789999


Q ss_pred             CC
Q 026538          215 TV  216 (237)
Q Consensus       215 l~  216 (237)
                      ..
T Consensus       166 e~  167 (211)
T d2qy9a2         166 GT  167 (211)
T ss_dssp             TC
T ss_pred             CC
Confidence            75

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=1.7e-07  Score=71.44  Aligned_cols=40  Identities=13%  Similarity=0.010  Sum_probs=29.3

Q ss_pred             ccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCC
Q 026538          175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  214 (237)
Q Consensus       175 ~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D  214 (237)
                      ..+.++++|+..........+.+.+...+.+++++.++++
T Consensus        84 ~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  123 (213)
T d1bifa1          84 EGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV  123 (213)
T ss_dssp             TCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred             cCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeecc
Confidence            4556678898766555556666667777889999888886

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.02  E-value=4.7e-06  Score=66.40  Aligned_cols=56  Identities=14%  Similarity=0.170  Sum_probs=45.7

Q ss_pred             cccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538          172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (237)
Q Consensus       172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~  229 (237)
                      ...+|+|++|+|+..+++..+..+.+.++  ++|+++|+||+|+.+++....+.+.++
T Consensus        13 i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~~~~~~w~~~f~   68 (273)
T d1puja_          13 LKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADAAVTQQWKEHFE   68 (273)
T ss_dssp             GGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             HHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCchHHHHHHHHHHH
Confidence            33499999999999988888877766664  689999999999999887776666554

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.2e-05  Score=64.05  Aligned_cols=60  Identities=25%  Similarity=0.277  Sum_probs=42.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccceeecc-CCCCceEEEEEEE------cCCeEEEEeCCCCCCc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTINFFK------LGTKLCLVDLPGYGFA  151 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~-~~~g~t~~~~~~~------~~~~~~liDTpG~~~~  151 (237)
                      ...|.++|+.++|||+|+|.|++......++ ....+|+.+-+..      .+..+.++||.|+.+.
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~   98 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV   98 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence            4578899999999999999999874322222 2234566653322      2456999999998764

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=7.5e-06  Score=59.59  Aligned_cols=23  Identities=39%  Similarity=0.670  Sum_probs=21.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .|.++|+|.+|||||||++.|+.
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            47899999999999999999985

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.63  E-value=1.2e-05  Score=59.13  Aligned_cols=22  Identities=23%  Similarity=0.602  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +|+++|++|+|||||++.+++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHhc
Confidence            7999999999999999999975

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=0.00032  Score=51.46  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=21.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +....|+++|.|||||||+...++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34457889999999999999988765

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=8.1e-05  Score=58.79  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=21.1

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+++++|++|+|||+++..|...
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            48999999999999999998875

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.44  E-value=3e-05  Score=56.35  Aligned_cols=24  Identities=33%  Similarity=0.645  Sum_probs=21.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|+|+++|+|||||||+.+.|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            479999999999999999999865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.40  E-value=3e-05  Score=56.83  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ..+|+|.|++|||||||.++|....
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.32  E-value=6.7e-05  Score=54.55  Aligned_cols=26  Identities=27%  Similarity=0.449  Sum_probs=23.1

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhcc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +...+|++.|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=7.6e-05  Score=58.06  Aligned_cols=25  Identities=32%  Similarity=0.472  Sum_probs=22.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.|+|+|++|||||||++.|.|-.
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3489999999999999999999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.16  E-value=8.4e-05  Score=56.16  Aligned_cols=24  Identities=21%  Similarity=0.542  Sum_probs=21.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|+|..
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            378999999999999999999863

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.15  E-value=9e-05  Score=58.07  Aligned_cols=24  Identities=38%  Similarity=0.637  Sum_probs=21.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++|+|++|||||||++.|+|-.
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            489999999999999999999863

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.15  E-value=0.00011  Score=54.65  Aligned_cols=26  Identities=15%  Similarity=0.273  Sum_probs=22.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ..++|+++|+|||||||....|....
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh
Confidence            45799999999999999999998653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.15  E-value=9.4e-05  Score=57.58  Aligned_cols=25  Identities=44%  Similarity=0.578  Sum_probs=22.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|||||||++.|+|-.
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3489999999999999999999863

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.13  E-value=0.0001  Score=56.85  Aligned_cols=24  Identities=33%  Similarity=0.347  Sum_probs=21.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      =.++++|++|||||||++.+.|-.
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCcchhhHhccCCC
Confidence            378999999999999999999863

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.00012  Score=53.22  Aligned_cols=21  Identities=14%  Similarity=0.303  Sum_probs=19.0

Q ss_pred             EEEEecCCCCchhhHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .+.|+|.+|||||||++.|+.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            568999999999999999875

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00012  Score=54.26  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -|+|+|++|+|||||++.|+..
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999999865

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00011  Score=56.77  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=21.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.+.|-.
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            378999999999999999999853

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.12  E-value=9.8e-05  Score=53.70  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      |+|+++|.+||||||+.+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999998765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.11  E-value=8.7e-05  Score=54.89  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=20.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-|+++|++|||||||++.|...
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            36789999999999999999875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00011  Score=57.47  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++++|++|||||||++.|.|-.
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhccc
Confidence            3489999999999999999999864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.09  E-value=0.00012  Score=52.11  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.2

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|++.|.||||||||.+.|...
T Consensus         4 lIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999998754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=7.5e-05  Score=55.58  Aligned_cols=21  Identities=38%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             EEEecCCCCchhhHHHHHhcc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~  115 (237)
                      |+|+|++|||||||++.|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.04  E-value=0.0033  Score=51.91  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++++||++|||||+++..|...
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHH
Confidence            46799999999999999888764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.04  E-value=0.0014  Score=50.82  Aligned_cols=23  Identities=13%  Similarity=0.398  Sum_probs=20.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|++.|+||+|||++.+++.+.
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            46899999999999999999876

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.04  E-value=0.00014  Score=56.25  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=21.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.+.|-.
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            378999999999999999999863

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.0002  Score=53.37  Aligned_cols=27  Identities=19%  Similarity=0.359  Sum_probs=23.9

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +..+.|+|+|+|||||||+...|....
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            467889999999999999999998764

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.03  E-value=0.00017  Score=53.70  Aligned_cols=25  Identities=16%  Similarity=0.276  Sum_probs=21.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .+.|+|+|+|||||||+...|....
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3577899999999999999998653

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.01  E-value=0.00015  Score=56.22  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             EEEEecCCCCchhhHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .++++|++|||||||++.|.|-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            56899999999999999999863

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00019  Score=57.09  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++|+|++|||||||++.|+|..
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            3489999999999999999999864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.99  E-value=0.00017  Score=53.46  Aligned_cols=25  Identities=12%  Similarity=0.313  Sum_probs=21.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ..+|+|+|++||||||+...|....
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3579999999999999999998664

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00015  Score=54.40  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=20.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+++++|++|+|||+++..|...
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHH
Confidence            48999999999999999998875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.98  E-value=0.00012  Score=56.39  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      =.++++|++|||||||++.|.|-.
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            378999999999999999999864

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.98  E-value=0.00021  Score=51.78  Aligned_cols=25  Identities=28%  Similarity=0.275  Sum_probs=21.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+..|.++|.|||||||+...|...
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568889999999999999988754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.97  E-value=0.00025  Score=52.84  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=23.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhccc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ...+|+|+|+|||||||+...|....
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999998764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.0025  Score=49.57  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+++.|+||+|||++++++...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            46899999999999999999876

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.97  E-value=0.00018  Score=55.71  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      =.++++|++|||||||++.|.|-.
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            378999999999999999999864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.96  E-value=0.00018  Score=55.87  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|+|-.
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999999863

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.96  E-value=0.00017  Score=51.95  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|++.|++||||||+.+.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999865

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00018  Score=55.76  Aligned_cols=24  Identities=21%  Similarity=0.266  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|.|-.
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCc
Confidence            478999999999999999999863

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00018  Score=54.51  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-|+|+|++|||||||++.|+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            46889999999999999999875

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.95  E-value=0.00031  Score=51.85  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      +...|+|.|.+|||||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            445678999999999999999874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00012  Score=54.63  Aligned_cols=21  Identities=33%  Similarity=0.642  Sum_probs=19.3

Q ss_pred             EEEecCCCCchhhHHHHHhcc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~  115 (237)
                      |+|+|++|||||||.+.|+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00015  Score=55.96  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=21.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      =.++++|++|||||||++.|+|-
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            37899999999999999999985

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00021  Score=52.00  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|+|.|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            6899999999999999998853

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.00022  Score=55.21  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|+|||||++.|+|..
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999999874

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.88  E-value=0.0002  Score=56.05  Aligned_cols=25  Identities=36%  Similarity=0.569  Sum_probs=22.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .-.++|+|++|||||||++.|.|-.
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcC
Confidence            3489999999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00026  Score=50.39  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.1

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|+++|++||||||+...|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999865

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.85  E-value=0.00023  Score=52.10  Aligned_cols=23  Identities=13%  Similarity=0.385  Sum_probs=20.5

Q ss_pred             EEEEecCCCCchhhHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +|+|+|+|||||||+...|....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999997653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.84  E-value=0.00034  Score=53.70  Aligned_cols=25  Identities=16%  Similarity=0.457  Sum_probs=22.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+.+++.|+||+||||+.+++.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.82  E-value=0.00027  Score=55.40  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      =.++++|++|||||||++.|.|-.
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            388999999999999999999863

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.81  E-value=0.00028  Score=55.21  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      -.++++|++|||||||++.|+|..
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCC
Confidence            378999999999999999999863

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.79  E-value=0.00016  Score=56.11  Aligned_cols=24  Identities=17%  Similarity=0.306  Sum_probs=21.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      =.++++|++|||||||++.|.|-.
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            489999999999999999999863

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.75  E-value=0.00036  Score=50.79  Aligned_cols=21  Identities=14%  Similarity=0.230  Sum_probs=19.1

Q ss_pred             EEEEecCCCCchhhHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .|+|.|.+||||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.74  E-value=0.0031  Score=48.19  Aligned_cols=56  Identities=14%  Similarity=0.172  Sum_probs=38.6

Q ss_pred             ccEEEEEEeCCCC-CChhH-HHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538          175 LKRVCLLIDTKWG-VKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (237)
Q Consensus       175 ~d~v~~vvd~~~~-~~~~~-~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~  230 (237)
                      +|.+++|+.+..+ +.... ..++-.....+++.++|+||+||.+..+....++.+.+
T Consensus        11 iD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~   68 (231)
T d1t9ha2          11 VDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAE   68 (231)
T ss_dssp             CCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHH
T ss_pred             cCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHH
Confidence            7889999887543 33322 23444556678999999999999987766655555444

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.70  E-value=0.00035  Score=51.36  Aligned_cols=23  Identities=17%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchhhHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +|+|+|+|||||||+...|....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            78999999999999999998764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00042  Score=49.95  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=19.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..++++|++||||||+.+.|...
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45677899999999999999865

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.69  E-value=0.00043  Score=50.02  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|++.|++||||||+.+.|...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5788899999999999999765

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.69  E-value=0.00047  Score=51.24  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=22.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWG  117 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~  117 (237)
                      .+.|+|+|+|||||||+...|....+
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35788999999999999999987653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.68  E-value=0.00036  Score=51.19  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchhhHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +|+|+|+|||||||+...|....
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999998653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.0015  Score=50.23  Aligned_cols=27  Identities=11%  Similarity=0.252  Sum_probs=23.3

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhccc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ...+.+++.|++|+||||++.+++...
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            445689999999999999999999763

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.0004  Score=50.86  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=20.5

Q ss_pred             EEEEecCCCCchhhHHHHHhccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +|+|+|+|||||||....|....
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999997653

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00039  Score=51.53  Aligned_cols=24  Identities=13%  Similarity=0.267  Sum_probs=21.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      +.|+|+|+|||||||....|....
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999998653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.63  E-value=0.00044  Score=55.95  Aligned_cols=23  Identities=13%  Similarity=0.393  Sum_probs=21.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+|+|.|.+|+|||||+|+|++.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            37999999999999999999975

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.0008  Score=51.45  Aligned_cols=24  Identities=21%  Similarity=0.529  Sum_probs=21.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+.++|.|+||+||||+.+.|...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            468999999999999999999865

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00054  Score=50.30  Aligned_cols=24  Identities=17%  Similarity=0.362  Sum_probs=21.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      .+|+|+|+|||||||+...|....
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999998653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.60  E-value=0.00091  Score=51.85  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -|++.|+||+|||||..+|.+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999876

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.58  E-value=0.00063  Score=49.00  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.7

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|+|.|.+||||||+.+.|...
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5777899999999999999876

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00038  Score=51.27  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|.++|.|||||||+.+.|...
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457789999999999999999753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.55  E-value=0.00053  Score=49.50  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=19.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +|+++|.+||||||+...|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.52  E-value=0.0037  Score=47.58  Aligned_cols=52  Identities=17%  Similarity=0.217  Sum_probs=36.6

Q ss_pred             ccEEEEEEeCCC-CCChhH-HHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHH
Q 026538          175 LKRVCLLIDTKW-GVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAM  226 (237)
Q Consensus       175 ~d~v~~vvd~~~-~~~~~~-~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~  226 (237)
                      .|.+++|+.+.. .+.... ..++-.....++|.++|+||+||.++++.....+
T Consensus        11 iD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~   64 (225)
T d1u0la2          11 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRE   64 (225)
T ss_dssp             CCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHH
Confidence            788999987654 333332 3355555677999999999999998776554443

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.34  E-value=0.00083  Score=48.99  Aligned_cols=21  Identities=29%  Similarity=0.347  Sum_probs=18.3

Q ss_pred             EEEEecCCCCchhhHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .|+|.|.+||||||+++.|..
T Consensus         3 iivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            457789999999999999964

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.00083  Score=50.49  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=22.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcccc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQWG  117 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~~~  117 (237)
                      .|.|+|.|+|||||||+...|....+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36889999999999999999987654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.00094  Score=50.20  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      +.|+|.|.+|||||||.+.|..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999998854

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.29  E-value=0.0012  Score=50.23  Aligned_cols=24  Identities=42%  Similarity=0.736  Sum_probs=21.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+.+++.|++|+||||++.++...
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            467999999999999999999865

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.21  E-value=0.0011  Score=48.14  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.4

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|+++|.+||||||+.+.|...
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5778999999999999999754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.14  E-value=0.0015  Score=48.27  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|+|-|..||||||+++.|...
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999865

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.12  E-value=0.0017  Score=50.00  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...++|.|++|+||||+++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999998864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.03  E-value=0.0013  Score=51.05  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=18.1

Q ss_pred             EEEecCCCCchhhHHHHHhcc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +.+.|+||+|||+++++++..
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999999865

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0021  Score=48.78  Aligned_cols=24  Identities=42%  Similarity=0.703  Sum_probs=21.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+.+++.|++|+||||++..++..
T Consensus        33 ~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          33 LPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChHHHHHHHHHH
Confidence            356899999999999999998864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.91  E-value=0.0026  Score=49.20  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-|++.|++|+|||+|++++.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35899999999999999999976

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0022  Score=48.53  Aligned_cols=25  Identities=20%  Similarity=0.632  Sum_probs=21.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+.+++.|++|+||||+++.+...
T Consensus        35 ~~~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          35 NMPHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCchhhHHHHHHH
Confidence            3457999999999999999988754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.84  E-value=0.0019  Score=51.75  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..++++|+||||||.|.++|...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            46899999999999999999875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.003  Score=49.07  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-|++.|+||+|||++++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            36899999999999999999986

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.82  E-value=0.0025  Score=47.95  Aligned_cols=24  Identities=29%  Similarity=0.260  Sum_probs=20.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ....|.|.|.|||||||+.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            445889999999999999999874

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.0026  Score=48.08  Aligned_cols=24  Identities=42%  Similarity=0.720  Sum_probs=21.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|.+++.|++|+||||++..++..
T Consensus        35 ~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          35 LPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHH
Confidence            457899999999999999999864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.76  E-value=0.0088  Score=42.80  Aligned_cols=56  Identities=16%  Similarity=0.213  Sum_probs=35.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-EEEEE-cCCeEEEEeCCCCCC
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFK-LGTKLCLVDLPGYGF  150 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-~~~~~-~~~~~~liDTpG~~~  150 (237)
                      -.|++-|+-|||||||+..++..-+.  .......|-. +..|. .+..+.-+|.=-+.+
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg~--~~~V~SPTF~l~~~Y~~~~~~i~H~DlYRl~~   91 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIGH--QGNVKSPTYTLVEEYNIAGKMIYHFDLYRLAD   91 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTC--CSCCCCCTTTCEEEEEETTEEEEEEECTTCSC
T ss_pred             eEEEEecCCCccHHHHHHHHHhhccc--ccccCCCceEEEEeeccCCceEEEEEEeccCC
Confidence            36888999999999999999875322  1222222222 23332 355677788766543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.71  E-value=0.0044  Score=52.02  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+|+++|+||||||-|.++|.+.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHHH
Confidence            348999999999999999999875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.68  E-value=0.0029  Score=46.51  Aligned_cols=24  Identities=25%  Similarity=0.228  Sum_probs=20.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ...|+|.|.+||||||+.+.|...
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            356789999999999999988643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.66  E-value=0.003  Score=47.45  Aligned_cols=25  Identities=28%  Similarity=0.587  Sum_probs=21.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhcccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQWG  117 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~~  117 (237)
                      ++|+|-|++||||||....|....+
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5788889999999999999987643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.0029  Score=48.45  Aligned_cols=25  Identities=32%  Similarity=0.492  Sum_probs=21.6

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+.+++.|++|+||||++.+++..
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999998764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.59  E-value=0.0031  Score=48.46  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|+|.|++|+|||||++.++..
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Confidence            47889999999999999988753

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.00079  Score=49.43  Aligned_cols=20  Identities=25%  Similarity=0.468  Sum_probs=17.4

Q ss_pred             EEEEecCCCCchhhHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~  113 (237)
                      ..+|+|+.||||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            44678999999999999985

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.37  E-value=0.0032  Score=49.77  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=17.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .|.|+|.|.+||||||+.++|..
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHH
Confidence            46899999999999999998753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.006  Score=48.64  Aligned_cols=25  Identities=32%  Similarity=0.264  Sum_probs=20.7

Q ss_pred             CCCCEEEEecCCCCchhhHHHHHhc
Q 026538           90 PDLPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        90 ~~~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ...+.|+|.|.+|||||||.+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            3456889999999999999888754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.014  Score=44.48  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=18.9

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+++.|++|+||||+...++..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4788999999999999987653

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.022  Score=45.35  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.6

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++++|++|+|||.|..+|...
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhh
Confidence            6899999999999999998753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.13  E-value=0.006  Score=47.53  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=21.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhccc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~~  116 (237)
                      ..|++.|++|+|||+|++++++..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            468999999999999999999873

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.09  E-value=0.0051  Score=45.56  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.2

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -|+|-|..||||||++..|...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~   23 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999988753

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.05  E-value=0.0066  Score=49.57  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=21.8

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ....+++.|+||+|||+|.++|++.
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHH
Confidence            3458899999999999999999875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.04  E-value=0.0057  Score=44.68  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=20.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-|+|.|++|+||||+...|...
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            46899999999999999998876

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.98  E-value=0.006  Score=44.53  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-|+|.|++|+||||+.-.|...
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            46899999999999999988876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.005  Score=46.59  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|+|-|..||||||+++.|...
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.91  E-value=0.0048  Score=48.60  Aligned_cols=20  Identities=30%  Similarity=0.546  Sum_probs=17.5

Q ss_pred             EEEEecCCCCchhhHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~  113 (237)
                      --+++|+.||||||++.||.
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            45889999999999999873

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.80  E-value=0.0086  Score=43.38  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..-|++.|++|+||||+.-.|...
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            346899999999999999888876

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.65  E-value=0.0072  Score=50.02  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=20.3

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      -|+|.|++|+||||++.+++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            6899999999999999999875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.0078  Score=44.94  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.0

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +.|+|+|.+||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            46889999999999999988654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.51  E-value=0.0092  Score=44.39  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.3

Q ss_pred             CEEEEecCCCCchhhHHHHHhc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.36  E-value=0.013  Score=43.63  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=18.7

Q ss_pred             EEEEecCCCCchhhHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~  114 (237)
                      -|+|-|..||||||+++.|..
T Consensus         4 fIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588889999999999998874

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.28  E-value=0.015  Score=45.75  Aligned_cols=22  Identities=27%  Similarity=0.169  Sum_probs=18.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHh
Q 026538           92 LPEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~  113 (237)
                      ...|+|.|.+|||||||...|.
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHH
Confidence            3577899999999999987764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.012  Score=43.09  Aligned_cols=24  Identities=17%  Similarity=0.188  Sum_probs=20.1

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.+.|.|+||+|||+|...++..
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHH
Confidence            347899999999999999877654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.23  E-value=0.0095  Score=48.74  Aligned_cols=19  Identities=32%  Similarity=0.625  Sum_probs=16.9

Q ss_pred             EEEecCCCCchhhHHHHHh
Q 026538           95 IAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~  113 (237)
                      -+|+|++|+||||++.||.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4788999999999999973

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.015  Score=43.37  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=18.5

Q ss_pred             CEEEEecCCCCchhhHHHHHhc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .-|+|-|..||||||++..|..
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688889999999998887754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.014  Score=44.18  Aligned_cols=22  Identities=32%  Similarity=0.594  Sum_probs=19.1

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .|+|=|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5678899999999999999753

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.97  E-value=0.042  Score=42.72  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.2

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..|+|+|..|+|||||...++..
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47889999999999999988765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.95  E-value=0.017  Score=47.10  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=20.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+++++|+||||||-|..+|...
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHhh
Confidence            457999999999999999998653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.86  E-value=0.018  Score=43.61  Aligned_cols=24  Identities=17%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             EEEEecCCCCchhhHHHHHhcccc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQWG  117 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~~~  117 (237)
                      .|+|.|..||||||..+.|....+
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~g   26 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNYS   26 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            689999999999999999976533

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.66  E-value=0.017  Score=43.31  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=20.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.+.|.|+||+|||+|...++-.
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            447899999999999999777643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.63  E-value=0.0097  Score=47.67  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=19.3

Q ss_pred             EEEEecCCCCchhhHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .|+++|++|+|||+|+.+|.+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            689999999999999998864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.57  E-value=0.017  Score=42.91  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.+++.|++++|||+|+++|+.-
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHH
Confidence            357899999999999999988764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.24  E-value=0.019  Score=43.09  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             EEEecCCCCchhhHHHHHhcc
Q 026538           95 IAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        95 i~lvG~~~~GKSTLin~L~~~  115 (237)
                      +.+.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999876

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.17  E-value=0.049  Score=40.35  Aligned_cols=21  Identities=19%  Similarity=0.455  Sum_probs=18.7

Q ss_pred             EEEEecCCCCchhhHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~  114 (237)
                      -+++.|++|+||||+...+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999997765

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.17  E-value=0.023  Score=45.43  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=19.0

Q ss_pred             EEEEecCCCCchhhHHHHHhcc
Q 026538           94 EIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .++++|+||+|||.|..+|.+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            3455799999999999999876

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.16  E-value=0.086  Score=39.13  Aligned_cols=65  Identities=11%  Similarity=0.042  Sum_probs=40.7

Q ss_pred             CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEE-EEEecCCCC
Q 026538          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTV  216 (237)
Q Consensus       138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~Dl~  216 (237)
                      +.+.++|+|+....            .....+   ..+|.+++++.....-.......++.+.+.+.|++ +|+||.|..
T Consensus       112 ~d~IiiD~~~~~~~------------~~~~~l---~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~  176 (237)
T d1g3qa_         112 FDFILIDCPAGLQL------------DAMSAM---LSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS  176 (237)
T ss_dssp             CSEEEEECCSSSSH------------HHHHHH---TTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred             CCEEEEcccccccc------------cchhhh---hhhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhcccccc
Confidence            56999999974320            111112   22899999997652111222455666677788876 899999865


Q ss_pred             C
Q 026538          217 F  217 (237)
Q Consensus       217 ~  217 (237)
                      .
T Consensus       177 ~  177 (237)
T d1g3qa_         177 D  177 (237)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.03  E-value=0.14  Score=39.56  Aligned_cols=23  Identities=17%  Similarity=0.133  Sum_probs=18.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      ...+.+.|++++|||+|.-.++.
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHH
T ss_pred             ceeEEEecCCCcHHHHHHHHHHH
Confidence            44778999999999999755554

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.87  E-value=0.028  Score=42.43  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=18.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .-.++|.|+||+|||+|...++.
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            34788999999999999876654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.65  E-value=0.061  Score=42.66  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=18.4

Q ss_pred             EEEEecCCCCchhhHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .++++|++|+|||.+.+.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            678899999999999988764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.63  E-value=0.04  Score=41.09  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=19.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      +.-|+|-|..||||||+++.|..
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHH
Confidence            34688999999999999998864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.49  E-value=0.031  Score=43.11  Aligned_cols=20  Identities=25%  Similarity=0.363  Sum_probs=17.2

Q ss_pred             EEEEecCCCCchhhHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~  113 (237)
                      .++|.|+||+|||||+..+.
T Consensus        37 l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            67899999999999986665

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.40  E-value=0.035  Score=41.47  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=18.7

Q ss_pred             CEEEEecCCCCchhhHHHHHhc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      -.++|.|++|+|||+|...++-
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3788999999999999877764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.35  E-value=0.031  Score=44.78  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=20.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+|+|=|.-|+||||+++.|...
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999865

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.33  E-value=0.035  Score=41.72  Aligned_cols=24  Identities=17%  Similarity=0.278  Sum_probs=19.9

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.++|.|+||+|||+|...++..
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            347889999999999999777654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.08  E-value=0.035  Score=37.58  Aligned_cols=25  Identities=16%  Similarity=0.106  Sum_probs=22.2

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+.|.+.|.+|+||||+.++|...
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHH
Confidence            5679999999999999999999654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=91.99  E-value=0.042  Score=44.04  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+|+|=|..|+||||+++.|...
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSG
T ss_pred             EEEEEECCccCCHHHHHHHHHHH
Confidence            57899999999999999999875

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=91.82  E-value=0.039  Score=44.12  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=19.8

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+|+|=|.-|+||||+++.|...
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC-
T ss_pred             eEEEEECCcCCCHHHHHHHHHHH
Confidence            47889999999999999999754

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.68  E-value=0.038  Score=45.41  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=19.6

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..++|+|.+|+|||++++.++..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            46999999999999999877644

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.055  Score=40.62  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=19.5

Q ss_pred             CCEEEEecCCCCchhhHHHHHhc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .-.++|.|+||+|||+|.-.++.
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999877764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.46  E-value=0.053  Score=40.15  Aligned_cols=22  Identities=18%  Similarity=0.149  Sum_probs=17.8

Q ss_pred             CCEEEEecCCCCchhhHHHHHh
Q 026538           92 LPEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~  113 (237)
                      .-.++|.|+||+|||+|...++
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3478899999999999975544

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.11  E-value=0.071  Score=41.25  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.4

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-.+.+.|++++|||+|+++|...
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHH
Confidence            447788999999999999998754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.10  E-value=0.053  Score=41.52  Aligned_cols=20  Identities=25%  Similarity=0.204  Sum_probs=17.4

Q ss_pred             EEEEecCCCCchhhHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~  113 (237)
                      ..+|+|++|+|||||+-.|+
T Consensus        31 ~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            67799999999999987665

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.34  E-value=1  Score=32.66  Aligned_cols=106  Identities=7%  Similarity=0.020  Sum_probs=57.0

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      ..+.+++.|++|+|||++...|...-   .....           ....+..+...|-.  ..-+.++    .+......
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i---~~~~~-----------~h~D~~~i~~~~~~--I~Id~IR----~i~~~~~~   73 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV---EKFPP-----------KASDVLEIDPEGEN--IGIDDIR----TIKDFLNY   73 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH---HTSCC-----------CTTTEEEECCSSSC--BCHHHHH----HHHHHHTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH---hcccc-----------CCCCEEEEeCCcCC--CCHHHHH----HHHHHHhh
Confidence            45799999999999999999888641   11110           01235555544411  1223332    33332222


Q ss_pred             ccccccEEEEEEeCCCCCChhHH-HHHHHHHhc--CCcEEEEEecCCCC
Q 026538          171 TRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS--QTKYQVVLTKTDTV  216 (237)
Q Consensus       171 ~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~~--~~piilv~NK~Dl~  216 (237)
                      .......=++++|..+.++.... .+++.+.+-  +.-++++.|..+.+
T Consensus        74 ~~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~l  122 (198)
T d2gnoa2          74 SPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYL  122 (198)
T ss_dssp             CCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             CcccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhC
Confidence            22224445677776666555443 455666643  33466666666654

>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: TrmE connector domain
family: TrmE connector domain
domain: TrmE connector domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.78  E-value=0.00022  Score=52.48  Aligned_cols=85  Identities=18%  Similarity=0.098  Sum_probs=45.0

Q ss_pred             CcceEEeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHh
Q 026538           34 RRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        34 ~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~  113 (237)
                      ..++.... .+++.+|||+|+.+.  ..+.....+.+.......+.+........  .+.     +..|+|||||+|.+.
T Consensus        41 ~~L~~l~a-~iEa~iDf~ee~~~~--~~~~~~~l~~i~~~l~~li~~~~~g~~l~--~g~-----~vvn~Gkssl~n~~r  110 (173)
T d1xzpa1          41 RELIEVLA-EIRVELDYPDEIETN--TGEVVTRLERIKEKLTEELKKADAGILLN--RGQ-----EIFERGSDSLITNLR  110 (173)
T ss_dssp             HHHHHHHH-HHHHHHHSTTTCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCH-----HHHHHHTTCSCCSHH
T ss_pred             HHHHHHHH-HHHHhcCCccccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh-----cccccccchhhcchh
Confidence            34444444 789999999876332  22222122223333333333322211110  111     223899999999997


Q ss_pred             cccceeeccCCCCceEEE
Q 026538          114 RQWGVVRTSDKPGLTQTI  131 (237)
Q Consensus       114 ~~~~~~~~~~~~g~t~~~  131 (237)
                      ..   ..+++.+++|++.
T Consensus       111 ~~---~~v~~~~~t~~d~  125 (173)
T d1xzpa1         111 QK---QLLENVKGHLEDA  125 (173)
T ss_dssp             HH---HHHHHHHHHHHHH
T ss_pred             hH---HHHHHHHHHHHHH
Confidence            65   5677777777664

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.44  E-value=0.69  Score=33.77  Aligned_cols=67  Identities=18%  Similarity=0.118  Sum_probs=37.0

Q ss_pred             CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcE-EEEEecCCC
Q 026538          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT  215 (237)
Q Consensus       137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pi-ilv~NK~Dl  215 (237)
                      .+.+.++|+|+....   .     ....+..       +|.++++++....-.......+..+...+.++ -+|+||.+.
T Consensus       109 ~~D~viiD~~~~~~~---~-----~~~~l~~-------ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~  173 (232)
T d1hyqa_         109 STDILLLDAPAGLER---S-----AVIAIAA-------AQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITT  173 (232)
T ss_dssp             TCSEEEEECCSSSSH---H-----HHHHHHH-------SSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred             ccceeeecccccccc---h-----hHHHhhh-------hheeeeeccccccchhhhhhhhhhhhhccccccccccccccc
Confidence            355899999985431   0     0111111       89999998764211111123444455556664 478999875


Q ss_pred             CCh
Q 026538          216 VFP  218 (237)
Q Consensus       216 ~~~  218 (237)
                      ...
T Consensus       174 ~~~  176 (232)
T d1hyqa_         174 LGI  176 (232)
T ss_dssp             TTH
T ss_pred             ccc
Confidence            443

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.29  E-value=0.069  Score=41.34  Aligned_cols=16  Identities=13%  Similarity=0.243  Sum_probs=13.5

Q ss_pred             EEEEecCCCCchhhHH
Q 026538           94 EIAFAGRSNVGKSSML  109 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLi  109 (237)
                      .++|+|.+|+||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3788899999999764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=88.50  E-value=0.091  Score=41.05  Aligned_cols=15  Identities=20%  Similarity=0.415  Sum_probs=13.0

Q ss_pred             EEEecCCCCchhhHH
Q 026538           95 IAFAGRSNVGKSSML  109 (237)
Q Consensus        95 i~lvG~~~~GKSTLi  109 (237)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            778899999999765

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=87.81  E-value=0.15  Score=41.09  Aligned_cols=20  Identities=20%  Similarity=0.343  Sum_probs=16.7

Q ss_pred             CEEEEecCCCCchhhHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNAL  112 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L  112 (237)
                      +.++|.|++|+||||++..+
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHH
Confidence            57889999999999987543

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.26  E-value=1  Score=34.70  Aligned_cols=24  Identities=17%  Similarity=0.099  Sum_probs=19.6

Q ss_pred             CCEEEEecCCCCchhhHHHHHhcc
Q 026538           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .-++.++|.+|+|||+|+..+...
T Consensus        68 GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          68 GQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             TCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEeecCCCCChHHHHHHHHHh
Confidence            348899999999999998766543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=87.09  E-value=0.16  Score=38.65  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=17.2

Q ss_pred             CEEEEecCCCCchhhHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~  113 (237)
                      .+|+|.|.-|+||||+.-.|.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA   22 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLT   22 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHH
Confidence            478999999999999975443

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=87.09  E-value=0.16  Score=39.56  Aligned_cols=25  Identities=12%  Similarity=0.189  Sum_probs=21.3

Q ss_pred             CCCEEEEecCCCCchhhHHHHHhcc
Q 026538           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        91 ~~~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      .+-+++|+|.+|+|||+|+..+...
T Consensus        42 rGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          42 RGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             TTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            3449999999999999999888764

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=85.90  E-value=0.21  Score=33.75  Aligned_cols=21  Identities=19%  Similarity=0.165  Sum_probs=16.6

Q ss_pred             CEEEEecCCCCchhhHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~  113 (237)
                      ...++.+++|+|||+++-.++
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHH
Confidence            356788999999999885544

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.56  E-value=4.7  Score=30.62  Aligned_cols=22  Identities=14%  Similarity=0.154  Sum_probs=18.0

Q ss_pred             CCEEEEecCCCCchhhHHHHHh
Q 026538           92 LPEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~  113 (237)
                      .-++.++|.+|+|||+|+..+.
T Consensus        67 GQr~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          67 GQRELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHH
T ss_pred             CceEeeccCCCCChHHHHHHHH
Confidence            3488999999999999986543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.22  E-value=0.3  Score=36.69  Aligned_cols=21  Identities=19%  Similarity=0.276  Sum_probs=18.2

Q ss_pred             CEEEEecCCCCchhhHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~  113 (237)
                      ..+++.|+..+||||++..+.
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHH
Confidence            467889999999999998864

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.71  E-value=0.29  Score=37.21  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=16.2

Q ss_pred             CCEEEEecCCCCchhhHHHHHh
Q 026538           92 LPEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        92 ~~~i~lvG~~~~GKSTLin~L~  113 (237)
                      ...|++.|..|+||||+.-.|.
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA   41 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIA   41 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3456667999999999865443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.66  E-value=0.34  Score=37.00  Aligned_cols=21  Identities=38%  Similarity=0.640  Sum_probs=16.1

Q ss_pred             CEEEEecCCCCchhhHHHHHh
Q 026538           93 PEIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~  113 (237)
                      ..|.+.|..|+||||+.-+|.
T Consensus         9 ~~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1           9 PYLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCcChHHHHHHHHH
Confidence            456677999999999765544

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.96  E-value=0.32  Score=36.83  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.3

Q ss_pred             EEEEecCCCCchhhHHHHHhc
Q 026538           94 EIAFAGRSNVGKSSMLNALTR  114 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~~  114 (237)
                      .|+|.|++|+||+.+..+|-.
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHHH
Confidence            478889999999999998864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=82.85  E-value=0.37  Score=36.92  Aligned_cols=23  Identities=13%  Similarity=0.228  Sum_probs=18.9

Q ss_pred             CEEEEecCCCCchhhHHHHHhcc
Q 026538           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L~~~  115 (237)
                      ..+.|.|++++|||||.-.++..
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHHHH
Confidence            47789999999999998666544

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=82.26  E-value=0.35  Score=36.12  Aligned_cols=20  Identities=25%  Similarity=0.396  Sum_probs=17.5

Q ss_pred             EEEEecCCCCchhhHHHHHh
Q 026538           94 EIAFAGRSNVGKSSMLNALT  113 (237)
Q Consensus        94 ~i~lvG~~~~GKSTLin~L~  113 (237)
                      .+++.|+..+||||++..+.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            57899999999999998765

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.46  E-value=0.4  Score=36.79  Aligned_cols=20  Identities=30%  Similarity=0.503  Sum_probs=16.3

Q ss_pred             CEEEEecCCCCchhhHHHHH
Q 026538           93 PEIAFAGRSNVGKSSMLNAL  112 (237)
Q Consensus        93 ~~i~lvG~~~~GKSTLin~L  112 (237)
                      .+|++.|..|+||||+.-.|
T Consensus         3 r~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            37888999999999986444