Citrus Sinensis ID: 026577

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MEQEADSAYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLVSYSLLIRYQVVVPALLLCGYMCTST
Secondary Structure (PSIPRED)
cccccccccHHHHccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHccccccccccEEccEEEEcccccccccEEEEEEcccccccHHcccccHHHHHHccccccccccccccccccccEEEEEEccccEEEEEccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEcccEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEccccccHHHEEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEcEEEEccccccccccEEEEEEccccHHHHccccccHHHHHHHccccccccccHHcccccccEEEEEEccccEEEEEEccccccccccEEccccccccHHHcccccccccccHHcccHHHHHHHHHHHHHHHHHHHcccHHHccccHEEEEHHcccHHHHHcccccccc
Coil and Loop (DISEMBL)
MEQEADSAYKLLLscphgfspsevsvvfdesydrvphpdnnlensISEIWDSRVQINKSLFngqkfrygghimrgeggssveSHVCLHlgltdyrtfvgtnlnplwekflvpseddviqcqhtasplgngavvetsdKKILLLQRsnnvgefpghfvfpgghpepqdagitshpcgstdsefinhKVSQEMFDSITREVVEEigvpseslvSYSLLIRYQVVVPALLLCGYMCTST
Flexible Loop (DISEMBL)
MEQEADSAYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHtasplgngavvETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLVSYSLLIRYQVVVPALLLCGYMCTST
Low Complexity Region (SEG)
MEQEADSAYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLVSYSLLIRYQVVVPALLLCGYMCTST
Disordered region (IsUnstruct)
********YKLLLSCPHGFSPSEVSVVFDESY***********NSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP**********************FINHKVSQEMFDSITREVVEEIGVPSESLVSYSLLIRYQVVVPALLLCGYMC***
Disordered Region (DISOPRED)
*****DS**KLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAG*****************VSQEMFDSITREVVEEIGVPSESLVSYSLLIRYQVVVPALLLCGYMCTST
Disordered Region (DISEMBL)
MEQEADSAYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLVSYSLLIRYQVVVPALLLCGYMCTST
Disordered Region (DISPRO)
*****DSAYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLVSYSLLIRYQVVVPALLLCGYMCTS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQEADSAYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLVSYSLLIRYQVVVPALLLCGYMCTST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q8VYR2	311	Nudix hydrolase 9 OS=Arab	yes	no	0.872	0.662	0.655	6e-75
Q6P9U1	308	Nucleoside diphosphate-li	yes	no	0.860	0.659	0.356	2e-25
Q2TBI8	290	Nucleoside diphosphate-li	yes	no	0.860	0.7	0.345	6e-23
Q9BRQ3	303	Nucleoside diphosphate-li	yes	no	0.805	0.627	0.343	8e-22
Q9DD16	308	Nucleoside diphosphate-li	yes	no	0.788	0.603	0.343	1e-21

>sp|Q8VYR2|NUDT9_ARATH Nudix hydrolase 9 OS=Arabidopsis thaliana GN=NUDT9 PE=2 SV=1

 Score =  280 bits (716), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 137/209 (65%), Positives = 165/209 (78%), Gaps = 3/209 (1%)

Query: 7   SAYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKF 66
           S Y+LLLSCP G SPS+VSV F +S+DR+P  D  LE+SIS++W+ R Q N SLFNGQKF
Sbjct: 13  SRYQLLLSCPSGLSPSQVSVDFSKSHDRIPRQDPGLEDSISQVWEQRSQGNSSLFNGQKF 72

Query: 67  RYGGHIMRGEGGSSVE-SHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTAS 125
           RYGG+ +  + GS+ E  HVCL LGLTDYRTFVGTNL+ LWEKFLV SEDD ++C+HT+S
Sbjct: 73  RYGGYCLDDDDGSTNEVPHVCLRLGLTDYRTFVGTNLSSLWEKFLVTSEDDSVRCRHTSS 132

Query: 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGST--DSEFI 183
           PLGNGAV+ETSDKKI++L+RSNNVGEFPGH+VFPGGHPEP   GI  H   +     E +
Sbjct: 133 PLGNGAVIETSDKKIIVLRRSNNVGEFPGHYVFPGGHPEPTAVGIDYHQLENNVQTGEVL 192

Query: 184 NHKVSQEMFDSITREVVEEIGVPSESLVS 212
           N KV+QEMFDSI  EVVEE G+P+ SL S
Sbjct: 193 NKKVTQEMFDSIICEVVEETGIPASSLSS 221

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q6P9U1|NUD22_RAT Nucleoside diphosphate-linked moiety X motif 22 OS=Rattus norvegicus GN=Nudt22 PE=2 SV=1

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/213 (35%), Positives = 108/213 (50%), Gaps = 10/213 (4%)

Query: 6   DSAYKLLLSCPHG-FSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQ 64
           D    L+L CP G  S  +VSV    ++DR P P+ +   +I+ IW++R+Q    +F+  
Sbjct: 2   DPEVSLMLLCPPGGLSQEQVSVELSPAHDRRPLPEGD--KTITAIWETRLQAQPWIFDAP 59

Query: 65  KFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQ-HT 123
           KFR     +     SS E  + LHLGLT YR F+GTN +            D    Q + 
Sbjct: 60  KFRLHSATL---ASSSPEPQLLLHLGLTSYRDFLGTNWSSSASWLRQQGATDWGDKQAYL 116

Query: 124 ASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFI 183
           A PLG GA + T+D  ++ L+RS  V E PG    PGGHPEPQ     S P      +  
Sbjct: 117 ADPLGVGAALVTADDFLVFLRRSQQVAEAPGLVDVPGGHPEPQALCSGSIP---QHEDLP 173

Query: 184 NHKVSQEMFDSITREVVEEIGVPSESLVSYSLL 216
              V +E+F S+ +EV +E+ +P  +L    LL
Sbjct: 174 GELVVRELFSSVLQEVCDEVNLPLHTLSQPLLL 206

Rattus norvegicus (taxid: 10116)

>sp|Q2TBI8|NUD22_BOVIN Nucleoside diphosphate-linked moiety X motif 22 OS=Bos taurus GN=NUDT22 PE=2 SV=1

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 102/214 (47%), Gaps = 11/214 (5%)

Query: 6   DSAYKLLLSCPHGFSP-SEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQ 64
           D    LLL CP G  P  +V      +YDR P P  +   +I  IW+SR+Q    LFN  
Sbjct: 2   DPEVSLLLQCPPGGLPEKQVRAELSPAYDRRPLPGGD--KAIIAIWESRLQAQPWLFNAP 59

Query: 65  KFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNL--NPLWEKFLVPSEDDVIQCQH 122
           KFR     +   G       + L LGLT Y+ F+GTN   +  W +    ++    Q  +
Sbjct: 60  KFRLHSATLAPTGLPG--PQLLLRLGLTSYQDFLGTNWASSAAWLRQQGATDWGDKQA-Y 116

Query: 123 TASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEF 182
            A PLG GA + T+D  ++ L+RS  V E PG    PGGHPEPQ       P      + 
Sbjct: 117 LADPLGVGAALATADDFLVFLRRSGQVAEAPGLVDVPGGHPEPQALCPGDSPL---HKDL 173

Query: 183 INHKVSQEMFDSITREVVEEIGVPSESLVSYSLL 216
               V  E+F S+ +E+ +E+ VP  +L    LL
Sbjct: 174 PGELVVHELFSSVLQEICDEVNVPPLTLSQPLLL 207

Bos taurus (taxid: 9913)

>sp|Q9BRQ3|NUD22_HUMAN Nucleoside diphosphate-linked moiety X motif 22 OS=Homo sapiens GN=NUDT22 PE=2 SV=3

 Score =  103 bits (258), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 97/201 (48%), Gaps = 11/201 (5%)

Query: 6   DSAYKLLLSCPHGFSPSE-VSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQ 64
           D    LLL CP G  P E +      ++DR P P  +   +I+ IW++R++    LF+  
Sbjct: 2   DPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGD--EAITAIWETRLKAQPWLFDAP 59

Query: 65  KFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQ-HT 123
           KFR     +   G  S    + L LGLT YR F+GTN +            D    Q + 
Sbjct: 60  KFRLHSATLAPIG--SRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYL 117

Query: 124 ASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTD-SEF 182
           A PLG GA + T+D  ++ L+RS  V E PG    PGGHPEPQ       P GS    + 
Sbjct: 118 ADPLGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQ----ALCPGGSPQHQDL 173

Query: 183 INHKVSQEMFDSITREVVEEI 203
               V  E+F S+ +E+ +E+
Sbjct: 174 AGQLVVHELFSSVLQEICDEV 194

Homo sapiens (taxid: 9606)

>sp|Q9DD16|NUD22_MOUSE Nucleoside diphosphate-linked moiety X motif 22 OS=Mus musculus GN=Nudt22 PE=2 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 100/201 (49%), Gaps = 15/201 (7%)

Query: 20  SPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGS 79
           S  +V+V    ++DR P P  +   +I+ IW++R Q    +F+  KFR     +     S
Sbjct: 17  SQEQVAVELSPAHDRRPLPGGD--KAITAIWETRQQAQPWIFDAPKFRLHSATLVS---S 71

Query: 80  SVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQ-HTASPLGNGAVVETSDK 138
           S E  + LHLGLT YR F+GTN +            D    Q + A PLG GA + T+D 
Sbjct: 72  SPEPQLLLHLGLTSYRDFLGTNWSSSASWLRQQGAADWGDKQAYLADPLGVGAALVTADD 131

Query: 139 KILLLQRSNNVGEFPGHFVFPGGHPEPQ---DAGITSHPCGSTDSEFINHKVSQEMFDSI 195
            ++ L+RS  V E PG    PGGHPEPQ     GI  H       +     V +E+F S+
Sbjct: 132 FLVFLRRSQQVAEAPGLVDVPGGHPEPQALCSGGIPRH------KDLPGLLVVRELFSSV 185

Query: 196 TREVVEEIGVPSESLVSYSLL 216
            +E+ +E+ +P  +L    LL
Sbjct: 186 LQEICDEVNLPLHTLSQPLLL 206

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
225435108	301	PREDICTED: nudix hydrolase 9-like [Vitis	0.881	0.691	0.746	5e-88
297746149	297	unnamed protein product [Vitis vinifera]	0.881	0.700	0.746	8e-88
224104499	293	predicted protein [Populus trichocarpa]	0.855	0.689	0.75	2e-84
356542603	301	PREDICTED: nudix hydrolase 9-like [Glyci	0.889	0.697	0.691	2e-81
255637896	301	unknown [Glycine max]	0.889	0.697	0.686	4e-81
357472597	303	Nudix hydrolase [Medicago truncatula] gi	0.864	0.673	0.720	8e-81
255587161	306	Nudix hydrolase, putative [Ricinus commu	0.872	0.673	0.7	3e-80
449461013	324	PREDICTED: nudix hydrolase 9-like, parti	0.915	0.666	0.662	3e-79
356539080	294	PREDICTED: LOW QUALITY PROTEIN: nudix hy	0.889	0.714	0.655	4e-77
297815782	303	hypothetical protein ARALYDRAFT_484997 [	0.864	0.673	0.661	1e-74

>gi|225435108|ref|XP_002284515.1| PREDICTED: nudix hydrolase 9-like [Vitis vinifera]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 156/209 (74%), Positives = 177/209 (84%), Gaps = 1/209 (0%)

Query: 9   YKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRY 68
           Y+LLLSCP G SPS+VSV F E +DR+PHPD +L+NSISEIWD RVQ N SL+NG KFRY
Sbjct: 15  YRLLLSCPSGLSPSQVSVDFSERFDRIPHPDISLDNSISEIWDGRVQQNASLYNGTKFRY 74

Query: 69  GGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTASPLG 128
            GHIM G GGS  +SHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDD ++CQHT+SPLG
Sbjct: 75  AGHIMHGGGGSDEKSHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDSVRCQHTSSPLG 134

Query: 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGS-TDSEFINHKV 187
           NGA++ETSDK+I++L+RSNNVGEFPGHFVFPGGHPEPQ+ GI SH      D +FIN KV
Sbjct: 135 NGAIIETSDKRIVVLRRSNNVGEFPGHFVFPGGHPEPQEIGIVSHQFDKDMDPDFINRKV 194

Query: 188 SQEMFDSITREVVEEIGVPSESLVSYSLL 216
           SQEMFDSI REVVEEIGVP  SL +  L+
Sbjct: 195 SQEMFDSIVREVVEEIGVPEASLCNPVLI 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746149|emb|CBI16205.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (842), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 156/209 (74%), Positives = 177/209 (84%), Gaps = 1/209 (0%)

Query: 9   YKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRY 68
           Y+LLLSCP G SPS+VSV F E +DR+PHPD +L+NSISEIWD RVQ N SL+NG KFRY
Sbjct: 11  YRLLLSCPSGLSPSQVSVDFSERFDRIPHPDISLDNSISEIWDGRVQQNASLYNGTKFRY 70

Query: 69  GGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTASPLG 128
            GHIM G GGS  +SHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDD ++CQHT+SPLG
Sbjct: 71  AGHIMHGGGGSDEKSHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDSVRCQHTSSPLG 130

Query: 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGS-TDSEFINHKV 187
           NGA++ETSDK+I++L+RSNNVGEFPGHFVFPGGHPEPQ+ GI SH      D +FIN KV
Sbjct: 131 NGAIIETSDKRIVVLRRSNNVGEFPGHFVFPGGHPEPQEIGIVSHQFDKDMDPDFINRKV 190

Query: 188 SQEMFDSITREVVEEIGVPSESLVSYSLL 216
           SQEMFDSI REVVEEIGVP  SL +  L+
Sbjct: 191 SQEMFDSIVREVVEEIGVPEASLCNPVLI 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104499|ref|XP_002313456.1| predicted protein [Populus trichocarpa] gi|222849864|gb|EEE87411.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 153/204 (75%), Positives = 171/204 (83%), Gaps = 2/204 (0%)

Query: 9   YKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRY 68
           Y+L+LSCP G SPS+VSVVFD SYDR+ HPD  LENSISEIWD RVQ N SLFNG+KFRY
Sbjct: 6   YELVLSCPSGLSPSQVSVVFDPSYDRIAHPDIELENSISEIWDQRVQKNASLFNGKKFRY 65

Query: 69  GGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTASPLG 128
           GG+ +   GGS  + HVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDD++QCQHT+SPLG
Sbjct: 66  GGYTLCNRGGSQQDFHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDLMQCQHTSSPLG 125

Query: 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGS--TDSEFINHK 186
           NGA++ETSDKKI++LQRS NVGEFPGH VFPGGHPEP++ G  SH  G   T+ E  N K
Sbjct: 126 NGAILETSDKKIVVLQRSYNVGEFPGHVVFPGGHPEPEEVGAASHQMGERLTNLEHNNTK 185

Query: 187 VSQEMFDSITREVVEEIGVPSESL 210
           VSQEMFDSI REVVEEIGVP  SL
Sbjct: 186 VSQEMFDSIIREVVEEIGVPVTSL 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542603|ref|XP_003539756.1| PREDICTED: nudix hydrolase 9-like [Glycine max]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/217 (69%), Positives = 175/217 (80%), Gaps = 7/217 (3%)

Query: 1   MEQEADS-----AYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQ 55
           ME+EA S     ++ LL+SCP G SPS+VSV F ++YDR+PH D  LEN+ISEIW  R Q
Sbjct: 1   MEKEASSTDDPSSFTLLVSCPSGLSPSQVSVAFSDAYDRIPHSDVILENTISEIWKQRSQ 60

Query: 56  INKSLFNGQKFRYGGHIMRGEGGSS--VESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPS 113
            N SLFNG+KFRYGG ++  + GS    E H+CLHLGLTDYRTFVGTNL+PLWE+FLVPS
Sbjct: 61  KNNSLFNGKKFRYGGCVLHAKDGSDHECEPHLCLHLGLTDYRTFVGTNLSPLWERFLVPS 120

Query: 114 EDDVIQCQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSH 173
           EDD + CQHT++PLGNGAVVET+D KIL+LQRS+NVGEFPGHFVFPGGHPEPQ+ GITSH
Sbjct: 121 EDDSVLCQHTSNPLGNGAVVETNDNKILVLQRSDNVGEFPGHFVFPGGHPEPQEIGITSH 180

Query: 174 PCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL 210
                 +E IN KVSQEMFDSI REVVEEIGVP+ SL
Sbjct: 181 QYNKELTESINTKVSQEMFDSIVREVVEEIGVPASSL 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637896|gb|ACU19266.1| unknown [Glycine max]

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 149/217 (68%), Positives = 174/217 (80%), Gaps = 7/217 (3%)

Query: 1   MEQEADS-----AYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQ 55
           ME+EA S     ++ LL+SCP G SPS+VSV F ++YDR+PH D  LEN+ISEIW  R Q
Sbjct: 1   MEKEASSTDDPSSFTLLVSCPSGLSPSQVSVAFSDAYDRIPHSDVILENTISEIWKQRSQ 60

Query: 56  INKSLFNGQKFRYGGHIMRGEGGSS--VESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPS 113
            N SLFNG+KFRYGG ++  + GS    E H+CLHLGLTDYRTF GTNL+PLWE+FLVPS
Sbjct: 61  KNNSLFNGKKFRYGGCVLHAKDGSDHECEPHLCLHLGLTDYRTFAGTNLSPLWERFLVPS 120

Query: 114 EDDVIQCQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSH 173
           EDD + CQHT++PLGNGAVVET+D KIL+LQRS+NVGEFPGHFVFPGGHPEPQ+ GITSH
Sbjct: 121 EDDSVLCQHTSNPLGNGAVVETNDNKILVLQRSDNVGEFPGHFVFPGGHPEPQEIGITSH 180

Query: 174 PCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL 210
                 +E IN KVSQEMFDSI REVVEEIGVP+ SL
Sbjct: 181 QYNKELTESINTKVSQEMFDSIVREVVEEIGVPASSL 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472597|ref|XP_003606583.1| Nudix hydrolase [Medicago truncatula] gi|355507638|gb|AES88780.1| Nudix hydrolase [Medicago truncatula]

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 147/204 (72%), Positives = 165/204 (80%)

Query: 7   SAYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKF 66
           S++KLL S P G SPS+VSV F ++YDR+PH D  LEN+I EIWD R   NKSLFNG KF
Sbjct: 16  SSFKLLASFPSGLSPSQVSVAFSDAYDRIPHSDITLENTIPEIWDQRSLNNKSLFNGNKF 75

Query: 67  RYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTASP 126
           RYGGH++   G S  E HVCLHLGLTDYRTFVGTNL+PLWE+FLV SEDD + CQHT+SP
Sbjct: 76  RYGGHVLHTGGESGSEPHVCLHLGLTDYRTFVGTNLSPLWERFLVSSEDDSVLCQHTSSP 135

Query: 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHK 186
           LGNGAVVET D KIL+LQRSNNVGEFPG+FVFPGGHPEPQ+ GITS       +E IN K
Sbjct: 136 LGNGAVVETIDSKILVLQRSNNVGEFPGYFVFPGGHPEPQEVGITSRQYAKELTESINIK 195

Query: 187 VSQEMFDSITREVVEEIGVPSESL 210
           VSQEMFDSI REVVEEIGVP+ SL
Sbjct: 196 VSQEMFDSIVREVVEEIGVPASSL 219

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587161|ref|XP_002534161.1| Nudix hydrolase, putative [Ricinus communis] gi|223525765|gb|EEF28221.1| Nudix hydrolase, putative [Ricinus communis]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/210 (70%), Positives = 173/210 (82%), Gaps = 4/210 (1%)

Query: 3   QEADSAYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFN 62
           ++AD  YKLLL CP G S S+VSVVFD+SYDR+PHPD  LENSI++IWD R + N +L+N
Sbjct: 2   EKAD--YKLLLPCPSGLSSSQVSVVFDQSYDRIPHPDIELENSIAKIWDQRAEKNTTLYN 59

Query: 63  GQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQH 122
           G+KFRYGG+ +  EGG    SHV L LGLTDYRTFVGTNLNP WE+FLV S+DD I+C+H
Sbjct: 60  GKKFRYGGYNVYNEGGLDKVSHVGLLLGLTDYRTFVGTNLNPSWERFLVSSQDDSIRCEH 119

Query: 123 TASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGS--TDS 180
            +SPLGNGAV+ETSDKKI++LQRS++VGEFPGHFVFPGGHPEP++ GI SH      TDS
Sbjct: 120 MSSPLGNGAVIETSDKKIVVLQRSDHVGEFPGHFVFPGGHPEPEEVGIASHQSSKNFTDS 179

Query: 181 EFINHKVSQEMFDSITREVVEEIGVPSESL 210
           E IN KVSQEMFDSI REVVEEIGVP+ SL
Sbjct: 180 EMINRKVSQEMFDSIIREVVEEIGVPATSL 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461013|ref|XP_004148238.1| PREDICTED: nudix hydrolase 9-like, partial [Cucumis sativus] gi|449484992|ref|XP_004157039.1| PREDICTED: nudix hydrolase 9-like, partial [Cucumis sativus]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 147/222 (66%), Positives = 177/222 (79%), Gaps = 6/222 (2%)

Query: 1   MEQEAD---SAYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQIN 57
           ME+  D   S +K+L++ P G +PS+VS+ F + YDR+ HPD++LE+SI+EIW+ R+Q N
Sbjct: 20  MEKAVDVQRSPFKILIASPSGLTPSQVSIAFSDKYDRISHPDSSLEDSITEIWNQRLQTN 79

Query: 58  KSLFNGQKFRYGGHIMRGEGGSSVES-HVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDD 116
            SLFNG+KFRYGG     EGGSS E  HVCLHLGLTDYRTFVGTNL+PLWE+FLVPSEDD
Sbjct: 80  SSLFNGKKFRYGGFTFLSEGGSSNEDPHVCLHLGLTDYRTFVGTNLSPLWERFLVPSEDD 139

Query: 117 VIQCQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSH--P 174
            I CQH++SPLGNGA+VETSD KI+LL+RSNNVGEFPGHFVFPGGHPEPQ+ GI SH   
Sbjct: 140 SILCQHSSSPLGNGAIVETSDGKIVLLKRSNNVGEFPGHFVFPGGHPEPQELGIESHDDA 199

Query: 175 CGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLVSYSLL 216
            G  D   I+ K+S EMF+SI REVVEEIGVP ESL +  L+
Sbjct: 200 KGFADPNTIDEKLSHEMFNSIIREVVEEIGVPPESLCNPVLI 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539080|ref|XP_003538028.1| PREDICTED: LOW QUALITY PROTEIN: nudix hydrolase 9-like [Glycine max]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 141/215 (65%), Positives = 169/215 (78%), Gaps = 5/215 (2%)

Query: 1   MEQEADS-----AYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQ 55
           ME+EA S     ++ LL+SC  G S S+VSV   E+YDR+PH + +LEN+ISEIW+ R Q
Sbjct: 1   MEKEASSTDDTSSFTLLVSCTSGLSLSQVSVACSEAYDRIPHSEVSLENTISEIWEQRSQ 60

Query: 56  INKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSED 115
            N S FNG+KFRYGG+++    GS  E H+CLHLGLTDYRTFVGTNL+P+WE+FL PSED
Sbjct: 61  KNNSFFNGKKFRYGGYVLESGDGSVCEPHLCLHLGLTDYRTFVGTNLSPMWERFLFPSED 120

Query: 116 DVIQCQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPC 175
           D + C HT+SPLGNGAVVET+D KIL+LQ SNNVGEFPGHFVFPGGHPEPQ+ GITSH  
Sbjct: 121 DSVLCXHTSSPLGNGAVVETNDNKILVLQXSNNVGEFPGHFVFPGGHPEPQEIGITSHQY 180

Query: 176 GSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL 210
               +E +N KVSQE+FDSI  EVVEEIGVP+ SL
Sbjct: 181 DKELTESVNIKVSQEIFDSIVHEVVEEIGVPASSL 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815782|ref|XP_002875774.1| hypothetical protein ARALYDRAFT_484997 [Arabidopsis lyrata subsp. lyrata] gi|297321612|gb|EFH52033.1| hypothetical protein ARALYDRAFT_484997 [Arabidopsis lyrata subsp. lyrata]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 137/207 (66%), Positives = 168/207 (81%), Gaps = 3/207 (1%)

Query: 7   SAYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKF 66
           S Y+LLLSCP G SPS+VSV F +S+DR+PHPD +LE+SIS++W+ R Q N SLFNGQKF
Sbjct: 13  SRYQLLLSCPSGLSPSQVSVDFSKSHDRIPHPDPDLEDSISQVWEQRSQSNSSLFNGQKF 72

Query: 67  RYGGHIMRGE-GGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTAS 125
           RYG + + G+ GG++   HVCL LGLTDYRTFVGTNL+ LWE+FLVPSEDD ++C+HT+S
Sbjct: 73  RYGSYCLGGDDGGANEVPHVCLRLGLTDYRTFVGTNLSSLWERFLVPSEDDSVRCRHTSS 132

Query: 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGS--TDSEFI 183
           PLGNGAV+ETSDKKI++L+RSNNVGEFPGH+VFPGGHPEP   GI  H   +     E +
Sbjct: 133 PLGNGAVIETSDKKIIVLRRSNNVGEFPGHYVFPGGHPEPTAVGIDYHQLENDVQTGEVL 192

Query: 184 NHKVSQEMFDSITREVVEEIGVPSESL 210
           N KV+QEMFDSI  EVVEE G+P+ SL
Sbjct: 193 NKKVTQEMFDSIICEVVEETGIPASSL 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2075336	311	NUDT9 "nudix hydrolase homolog	0.872	0.662	0.655	3.7e-71
RGD|735224	308	Nudt22 "nudix (nucleoside diph	0.860	0.659	0.359	1.8e-25
MGI|MGI:1915573	308	Nudt22 "nudix (nucleoside diph	0.847	0.649	0.354	5.3e-24
UNIPROTKB|E2RP80	403	NUDT22 "Uncharacterized protei	0.868	0.508	0.347	1.1e-23
UNIPROTKB|F1RQ03	290	NUDT22 "Uncharacterized protei	0.860	0.7	0.344	1.8e-23
UNIPROTKB|Q2TBI8	290	NUDT22 "Nucleoside diphosphate	0.855	0.696	0.351	4.8e-23
UNIPROTKB|Q9BRQ3	303	NUDT22 "Nucleoside diphosphate	0.855	0.666	0.337	7.8e-23
ZFIN|ZDB-GENE-041010-171	331	nudt22 "nudix (nucleoside diph	0.533	0.380	0.364	6.6e-20

TAIR|locus:2075336 NUDT9 "nudix hydrolase homolog 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 137/209 (65%), Positives = 165/209 (78%)

Query:     7 SAYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKF 66
             S Y+LLLSCP G SPS+VSV F +S+DR+P  D  LE+SIS++W+ R Q N SLFNGQKF
Sbjct:    13 SRYQLLLSCPSGLSPSQVSVDFSKSHDRIPRQDPGLEDSISQVWEQRSQGNSSLFNGQKF 72

Query:    67 RYGGHIMRGEGGSSVE-SHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTAS 125
             RYGG+ +  + GS+ E  HVCL LGLTDYRTFVGTNL+ LWEKFLV SEDD ++C+HT+S
Sbjct:    73 RYGGYCLDDDDGSTNEVPHVCLRLGLTDYRTFVGTNLSSLWEKFLVTSEDDSVRCRHTSS 132

Query:   126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGST--DSEFI 183
             PLGNGAV+ETSDKKI++L+RSNNVGEFPGH+VFPGGHPEP   GI  H   +     E +
Sbjct:   133 PLGNGAVIETSDKKIIVLRRSNNVGEFPGHYVFPGGHPEPTAVGIDYHQLENNVQTGEVL 192

Query:   184 NHKVSQEMFDSITREVVEEIGVPSESLVS 212
             N KV+QEMFDSI  EVVEE G+P+ SL S
Sbjct:   193 NKKVTQEMFDSIICEVVEETGIPASSLSS 221

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

RGD|735224 Nudt22 "nudix (nucleoside diphosphate linked moiety X)-type motif 22" [Rattus norvegicus (taxid:10116)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 77/214 (35%), Positives = 110/214 (51%)

Query:     6 DSAYKLLLSCPHG-FSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQ 64
             D    L+L CP G  S  +VSV    ++DR P P+   + +I+ IW++R+Q    +F+  
Sbjct:     2 DPEVSLMLLCPPGGLSQEQVSVELSPAHDRRPLPEG--DKTITAIWETRLQAQPWIFDAP 59

Query:    65 KFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQ-HT 123
             KFR     +     SS E  + LHLGLT YR F+GTN +            D    Q + 
Sbjct:    60 KFRLHSATL---ASSSPEPQLLLHLGLTSYRDFLGTNWSSSASWLRQQGATDWGDKQAYL 116

Query:   124 ASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFI 183
             A PLG GA + T+D  ++ L+RS  V E PG    PGGHPEPQ     S P      +  
Sbjct:   117 ADPLGVGAALVTADDFLVFLRRSQQVAEAPGLVDVPGGHPEPQALCSGSIP---QHEDLP 173

Query:   184 NHKVSQEMFDSITREVVEEIGVPSESLVSYSLLI 217
                V +E+F S+ +EV +E+ +P  +L S  LL+
Sbjct:   174 GELVVRELFSSVLQEVCDEVNLPLHTL-SQPLLL 206

GO:0016787 "hydrolase activity" evidence=IEA

MGI|MGI:1915573 Nudt22 "nudix (nucleoside diphosphate linked moiety X)-type motif 22" [Mus musculus (taxid:10090)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 77/217 (35%), Positives = 109/217 (50%)

Query:     6 DSAYKLLLSCP-HGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQ 64
             D    LLL CP  G S  +V+V    ++DR P P    + +I+ IW++R Q    +F+  
Sbjct:     2 DPEVSLLLLCPLGGLSQEQVAVELSPAHDRRPLPGG--DKAITAIWETRQQAQPWIFDAP 59

Query:    65 KFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQ-HT 123
             KFR     +     SS E  + LHLGLT YR F+GTN +            D    Q + 
Sbjct:    60 KFRLHSATLVS---SSPEPQLLLHLGLTSYRDFLGTNWSSSASWLRQQGAADWGDKQAYL 116

Query:   124 ASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQ---DAGITSHPCGSTDS 180
             A PLG GA + T+D  ++ L+RS  V E PG    PGGHPEPQ     GI  H       
Sbjct:   117 ADPLGVGAALVTADDFLVFLRRSQQVAEAPGLVDVPGGHPEPQALCSGGIPRH------K 170

Query:   181 EFINHKVSQEMFDSITREVVEEIGVPSESLVSYSLLI 217
             +     V +E+F S+ +E+ +E+ +P  +L S  LL+
Sbjct:   171 DLPGLLVVRELFSSVLQEICDEVNLPLHTL-SQPLLL 206

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E2RP80 NUDT22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 76/219 (34%), Positives = 106/219 (48%)

Query:     3 QEADSAYKLLLSCPHGFSPSE-VSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLF 61
             Q  D    +LL CP G  P E V       +DR P P    + +I+ IW+SR+Q    LF
Sbjct:   112 QTMDPEVSVLLQCPPGGLPEEQVRAELSPDHDRRPLPGG--DEAIAAIWESRLQAQPWLF 169

Query:    62 NGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNL--NPLWEKFLVPSEDDVIQ 119
             +  KFR     +   G       + L LGLT YR F+GTN   +  W +    ++    Q
Sbjct:   170 DAPKFRLHSATLAPTGSQG--PRLLLRLGLTSYRDFLGTNWASSAAWLRQQGATDWGDKQ 227

Query:   120 CQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGST- 178
               + A PLG GA + T+D  ++ L+RS  V E PG    PGGHPEPQ       P     
Sbjct:   228 A-YLADPLGVGATLATADNFLVFLRRSRQVAEAPGLVDVPGGHPEPQAVCPGDSPLHKDL 286

Query:   179 DSEFINHKVSQEMFDSITREVVEEIGVPSESLVSYSLLI 217
               E + H    E+F S+ +E+ +E+ VP  +L S  LL+
Sbjct:   287 PGELVVH----ELFSSVLQEICDEVNVPLPTL-SQPLLL 320

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1RQ03 NUDT22 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 74/215 (34%), Positives = 108/215 (50%)

Query:     6 DSAYKLLLSCPHGFSPSE-VSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQ 64
             D    LLL CP G  P E V      +YDR P P    + +I+ IW+SR++    LF+  
Sbjct:     2 DPEVSLLLQCPPGGLPEEQVRAELSPAYDRRPLPGG--DKAITAIWESRLRAQPWLFDAP 59

Query:    65 KFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNL--NPLWEKFLVPSEDDVIQCQH 122
             KFR     +   G    +  + LHLGLT YR F+GTN   +  W +    ++    Q  +
Sbjct:    60 KFRLHSATLVPTGSPGPQ--LLLHLGLTSYRDFLGTNWASSAAWLRQQGATDWGDKQA-Y 116

Query:   123 TASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEF 182
              A PLG GA + T+D  ++ L+RS  V E PG    PGGHPEP+       P      + 
Sbjct:   117 LADPLGVGAALATADGFLVFLRRSGQVAEAPGLVDVPGGHPEPKALCPGDSPL---HKDL 173

Query:   183 INHKVSQEMFDSITREVVEEIGVPSESLVSYSLLI 217
                 V+ E+F S+ +E+ +E+ +P  +L S  LL+
Sbjct:   174 PGELVAHELFSSVLQEICDEVNLPLLTL-SRPLLL 207

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q2TBI8 NUDT22 "Nucleoside diphosphate-linked moiety X motif 22" [Bos taurus (taxid:9913)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 76/216 (35%), Positives = 106/216 (49%)

Query:     6 DSAYKLLLSCPHGFSPS-EVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQ 64
             D    LLL CP G  P  +V      +YDR P P    + +I  IW+SR+Q    LFN  
Sbjct:     2 DPEVSLLLQCPPGGLPEKQVRAELSPAYDRRPLPGG--DKAIIAIWESRLQAQPWLFNAP 59

Query:    65 KFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNL--NPLWEKFLVPSEDDVIQCQH 122
             KFR     +   G    +  + L LGLT Y+ F+GTN   +  W +    ++    Q  +
Sbjct:    60 KFRLHSATLAPTGLPGPQ--LLLRLGLTSYQDFLGTNWASSAAWLRQQGATDWGDKQA-Y 116

Query:   123 TASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGST-DSE 181
              A PLG GA + T+D  ++ L+RS  V E PG    PGGHPEPQ       P       E
Sbjct:   117 LADPLGVGAALATADDFLVFLRRSGQVAEAPGLVDVPGGHPEPQALCPGDSPLHKDLPGE 176

Query:   182 FINHKVSQEMFDSITREVVEEIGVPSESLVSYSLLI 217
              + H    E+F S+ +E+ +E+ VP  +L S  LL+
Sbjct:   177 LVVH----ELFSSVLQEICDEVNVPPLTL-SQPLLL 207

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q9BRQ3 NUDT22 "Nucleoside diphosphate-linked moiety X motif 22" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 73/216 (33%), Positives = 108/216 (50%)

Query:     6 DSAYKLLLSCPHGFSPSE-VSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQ 64
             D    LLL CP G  P E +      ++DR P P    + +I+ IW++R++    LF+  
Sbjct:     2 DPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGG--DEAITAIWETRLKAQPWLFDAP 59

Query:    65 KFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNP--LWEKFLVPSEDDVIQCQH 122
             KFR     +   G    +  + L LGLT YR F+GTN +    W +    ++    Q  +
Sbjct:    60 KFRLHSATLAPIGSRGPQ--LLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQA-Y 116

Query:   123 TASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTD-SE 181
              A PLG GA + T+D  ++ L+RS  V E PG    PGGHPEPQ       P GS    +
Sbjct:   117 LADPLGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQ----ALCPGGSPQHQD 172

Query:   182 FINHKVSQEMFDSITREVVEEIGVPSESLVSYSLLI 217
                  V  E+F S+ +E+ +E+ +P  +L S  LL+
Sbjct:   173 LAGQLVVHELFSSVLQEICDEVNLPLLTL-SQPLLL 207

GO:0016787 "hydrolase activity" evidence=IEA

ZFIN|ZDB-GENE-041010-171 nudt22 "nudix (nucleoside diphosphate linked moiety X)-type motif 22" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
 Identities = 47/129 (36%), Positives = 68/129 (52%)

Query:    85 VCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTAS-PLGNGAVVETSDKKILLL 143
             V L LGLT Y+ ++GTN +   EK      ++ +  Q   S PLG GAV+ T+D  ++LL
Sbjct:   115 VKLQLGLTCYKDYLGTNWSREAEKLQSHGRNECLDPQAFLSQPLGVGAVLATADGDVVLL 174

Query:   144 QRSNNVGEFPGHFVFPGGHPEPQDA--GITSHPCGSTDSEFINHKVSQEMFDSITREVVE 201
             +RS  V E  G    PGGHPEP+    G++         +     V  E+F S+  E+ +
Sbjct:   175 RRSQKVAEAAGLLDIPGGHPEPKMVCPGVSEEDICVELLQGKERAVVSEIFSSVCAEISD 234

Query:   202 EIGVPSESL 210
             E+ VP  SL
Sbjct:   235 EVNVPVSSL 243

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VYR2	NUDT9_ARATH	3, ., 6, ., 1, ., -	0.6555	0.8728	0.6623	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024412001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (297 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	5e-06
pfam00293	133	pfam00293, NUDIX, NUDIX domain	4e-05
cd04694	143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	1e-04
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	3e-04
cd04691	117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	0.002
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	0.004
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	0.004

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 25/79 (31%)

Query: 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHK 186
           +  GAV+   D ++LL++R+++     G +  PGG  EP +                   
Sbjct: 1   VAVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGE------------------- 38

Query: 187 VSQEMFDSITREVVEEIGV 205
               + ++  REV EE G+
Sbjct: 39  ---TLEEAAIREVREETGL 54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 23/88 (26%)

Query: 130 GAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQ 189
           G V+   D ++LL++RS     FPG +  PGG  EP          G +  E        
Sbjct: 6   GVVLLNEDGEVLLVRRSRP-PVFPGLWELPGGKVEP----------GESPEE-------- 46

Query: 190 EMFDSITREVVEEIGVPSESLVSYSLLI 217
               +  RE+ EE G+    L+   +L 
Sbjct: 47  ----AAVRELEEETGLRVLLLLLLGVLE 70

Length = 133

>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 23/102 (22%)

Query: 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHK 186
           +G   ++++SD+K+LL +R++++  FP  +V PGGH E                      
Sbjct: 2   VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVE---------------------- 39

Query: 187 VSQEMFDSITREVVEEIGVP-SESLVSYSLLIRYQVVVPALL 227
           + + + ++  RE+ EE G+       S+ +L  ++ V P LL
Sbjct: 40  LGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL 81

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 143

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 25/72 (34%)

Query: 140 ILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSIT--R 197
           +LL +R++++   PG   FPGG  +P D    +                       T  R
Sbjct: 18  VLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVA-----------------------TALR 54

Query: 198 EVVEEIGVPSES 209
           E  EEIG+P +S
Sbjct: 55  EAEEEIGLPPDS 66

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 25/96 (26%)

Query: 136 SDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSI 195
           SD K+LL +RS      PG    PGGH E  +                    SQE  +++
Sbjct: 9   SDDKVLLERRSLTKNADPGKLNIPGGHIEAGE--------------------SQE--EAL 46

Query: 196 TREVVEEIGVPSESLVSYSLLIRYQVVVPALLLCGY 231
            REV EE+GV     +SY+ L         L L  Y
Sbjct: 47  LREVQEELGV---DPLSYTYLCSLYHPTSELQLLHY 79

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 117

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 25/82 (30%)

Query: 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHK 186
           +G G +V     ++L++Q  N     P  +  PGG  +P                     
Sbjct: 3   VGVGGLVLNEKNEVLVVQERNKT---PNGWKLPGGLVDP--------------------- 38

Query: 187 VSQEMFDSITREVVEEIGVPSE 208
             +++FD   REV+EE G+ +E
Sbjct: 39  -GEDIFDGAVREVLEETGIDTE 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 27/88 (30%)

Query: 141 LLLQRSNNVGE--FPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITRE 198
           LLLQ  ++     +PGH+  PGGH E  +      P                  + + RE
Sbjct: 14  LLLQLRDDKPGIPYPGHWDLPGGHREGGET-----P-----------------LECVLRE 51

Query: 199 VVEEIGV-PSESLVSYSLLIRYQVVVPA 225
           ++EEIG+   ES + +     Y    P 
Sbjct: 52  LLEEIGLTLPESRIPWFR--VYPSASPP 77

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.58
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.56
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.54
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.5
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.5
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.5
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.48
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.47
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.47
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.47
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.46
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.46
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.46
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.44
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.44
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.43
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.42
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.42
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.42
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.42
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.42
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.42
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.41
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.41
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.41
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.4
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.4
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.4
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.4
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.4
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.39
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.38
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.38
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.37
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.37
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.36
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.36
PLN02325	144	nudix hydrolase	99.36
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.35
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.34
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.34
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.33
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.33
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.33
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.32
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.32
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.32
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.32
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.32
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.31
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.3
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.3
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.29
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.29
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.28
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.28
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.28
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.27
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.27
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.26
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.24
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.24
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.23
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.22
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.15
PLN02709	222	nudix hydrolase	99.12
PRK10707	190	putative NUDIX hydrolase; Provisional	99.1
PRK08999	312	hypothetical protein; Provisional	99.07
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.04
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.04
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	98.98
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	98.97
PRK10880	350	adenine DNA glycosylase; Provisional	98.93
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	98.93
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	98.93
PLN02791	770	Nudix hydrolase homolog	98.9
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	98.84
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	98.84
PLN02552	247	isopentenyl-diphosphate delta-isomerase	98.82
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	98.82
PLN03143	291	nudix hydrolase; Provisional	98.77
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	98.75
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	98.71
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	98.71
PRK13910	289	DNA glycosylase MutY; Provisional	98.7
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	98.69
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	98.64
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.57
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.5
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	98.33
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.02
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	97.93
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	97.92
KOG2457	555	consensus A/G-specific adenine DNA glycosylase [Re	97.89
PLN02839	372	nudix hydrolase	97.81
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	97.54
KOG4195	275	consensus Transient receptor potential-related cha	95.97
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	95.86
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	94.54
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	93.92
COG4112	203	Predicted phosphoesterase (MutT family) [General f	91.78
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	90.71
PF14443	126	DBC1: DBC1	85.67

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.58  E-value=2.1e-14  Score=116.26  Aligned_cols=84  Identities=21%  Similarity=0.346  Sum_probs=65.8

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++|+++|++.+|++|++||...  .++|+|.+|||++|++|+                      +.+|++||++||||+.
T Consensus        13 v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lPGG~ve~gEs----------------------~~~aa~RE~~EE~Gl~   68 (144)
T cd03430          13 VSIDLIVENEDGQYLLGKRTNR--PAQGYWFVPGGRIRKNET----------------------LTEAFERIAKDELGLE   68 (144)
T ss_pred             EEEEEEEEeCCCeEEEEEccCC--CCCCcEECCCceecCCCC----------------------HHHHHHHHHHHHHCCC
Confidence            5788888888899999999854  578999999999999999                      9999999999999998


Q ss_pred             CCCCccceeEEeeeeeec----------ceeeeeEEEEe
Q 026577          207 SESLVSYSLLIRYQVVVP----------ALLLCGYMCTS  235 (236)
Q Consensus       207 ~~~l~~~~ll~~~~~~~~----------~~~~~~~~~~~  235 (236)
                      +... ...+++.+.+.++          ..+...|+|..
T Consensus        69 v~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (144)
T cd03430          69 FLIS-DAELLGVFEHFYDDNFFGDDFSTHYVVLGYVLKL  106 (144)
T ss_pred             cccc-cceEEEEEEEEeccccccCCCccEEEEEEEEEEE
Confidence            8633 2345555543321          24566777764

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.56  E-value=2.4e-14  Score=111.87  Aligned_cols=84  Identities=25%  Similarity=0.429  Sum_probs=61.2

Q ss_pred             EEEEEEEeCCCeEEEEEEcCC-CCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNN-VGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~-~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      +|+++++..+|++||+||+.. ...++|+|.||||++|++|+                      +++||+||+.||||+.
T Consensus         2 ~v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~----------------------~~~aa~RE~~EE~Gl~   59 (122)
T cd04682           2 GVALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGET----------------------PLECVLRELLEEIGLT   59 (122)
T ss_pred             ceEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCC----------------------HHHHHHHHHHHHhCCc
Confidence            455566667799999999976 56799999999999999998                      9999999999999999


Q ss_pred             CCCCccceeEEeeeeeecceeeeeEEEE
Q 026577          207 SESLVSYSLLIRYQVVVPALLLCGYMCT  234 (236)
Q Consensus       207 ~~~l~~~~ll~~~~~~~~~~~~~~~~~~  234 (236)
                      +.... ..+...+..........-|++.
T Consensus        60 ~~~~~-~~~~~~~~~~~~~~~~~~f~~~   86 (122)
T cd04682          60 LPESR-IPWFRVYPSASPPGTEHVFVVP   86 (122)
T ss_pred             ccccc-cceeEecccCCCCceEEEEEEE
Confidence            86322 2223333322223445555554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.54  E-value=6.6e-14  Score=115.73  Aligned_cols=72  Identities=21%  Similarity=0.313  Sum_probs=58.2

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++|.++|.+.+|+|||+||+..  ..+|+|.||||++|++|+                      +.+||+||++||||+.
T Consensus        18 ~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lPGG~VE~GEt----------------------~~~Aa~REl~EEtGl~   73 (159)
T PRK15434         18 ISLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDET----------------------LEAAFERLTMAELGLR   73 (159)
T ss_pred             EEEEEEEECCCCEEEEEEccCC--CCCCcEECCceecCCCCC----------------------HHHHHHHHHHHHHCCc
Confidence            4788888877899999999853  568999999999999999                      9999999999999998


Q ss_pred             CCCCccceeEEeeeeee
Q 026577          207 SESLVSYSLLIRYQVVV  223 (236)
Q Consensus       207 ~~~l~~~~ll~~~~~~~  223 (236)
                      +.. ....++++|.+.+
T Consensus        74 v~~-~~~~~~~~~~~~~   89 (159)
T PRK15434         74 LPI-TAGQFYGVWQHFY   89 (159)
T ss_pred             ccc-ccceEEEEEEeec
Confidence            652 2234566655443

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=1.9e-13  Score=106.03  Aligned_cols=82  Identities=23%  Similarity=0.349  Sum_probs=59.6

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      +|.+++. .+|+|||+||... +..+|+|.+|||++|++|+                      +.+||+||+.||||+.+
T Consensus         2 ~v~~vi~-~~~~vLL~~r~~~-~~~~~~w~lPgG~ve~gE~----------------------~~~aa~REl~EEtGl~v   57 (120)
T cd04683           2 AVYVLLR-RDDEVLLQRRANT-GYMDGQWALPAGHLEKGED----------------------AVTAAVREAREEIGVTL   57 (120)
T ss_pred             cEEEEEE-ECCEEEEEEccCC-CCCCCeEeCCccccCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence            5666666 4789999999854 4668999999999999998                      99999999999999987


Q ss_pred             CCCccceeEEeeeeeec---ceeeeeEEEE
Q 026577          208 ESLVSYSLLIRYQVVVP---ALLLCGYMCT  234 (236)
Q Consensus       208 ~~l~~~~ll~~~~~~~~---~~~~~~~~~~  234 (236)
                      .. ....++..+....+   ..+...|+|.
T Consensus        58 ~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~   86 (120)
T cd04683          58 DP-EDLRLAHTMHRRTEDIESRIGLFFTVR   86 (120)
T ss_pred             Ch-hheEEEEEEEecCCCCceEEEEEEEEE
Confidence            62 22334444333222   2444556664

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=2.6e-13  Score=106.18  Aligned_cols=60  Identities=35%  Similarity=0.567  Sum_probs=53.2

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++|++++++.+|++||+||+..  ..+|.|.+||||+|++|+                      +.+||+||+.||||+.
T Consensus         3 ~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lPgG~ve~gEt----------------------~~eaa~RE~~EEtGl~   58 (125)
T cd04679           3 VGCGAAILRDDGKLLLVKRLRA--PEAGHWGIPGGKVDWMEA----------------------VEDAVVREIEEETGLS   58 (125)
T ss_pred             eEEEEEEECCCCEEEEEEecCC--CCCCeEeCCeeeccCCCC----------------------HHHHHHHHHHHHHCCC
Confidence            4788888888899999999854  457999999999999998                      9999999999999999


Q ss_pred             CCCC
Q 026577          207 SESL  210 (236)
Q Consensus       207 ~~~l  210 (236)
                      +...
T Consensus        59 ~~~~   62 (125)
T cd04679          59 IHST   62 (125)
T ss_pred             cccc
Confidence            8754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.50  E-value=7.2e-14  Score=111.93  Aligned_cols=59  Identities=27%  Similarity=0.472  Sum_probs=51.7

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      .+.+.++.++|++||+||+.....+||+|++|||++|++|+                      +.+||+||+.|||||.+
T Consensus         5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs----------------------~~~aa~REl~EEtGl~~   62 (141)
T PRK15472          5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGER----------------------IEEALRREIREELGEQL   62 (141)
T ss_pred             eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCC----------------------HHHHHHHHHHHHHCCce
Confidence            44555566789999999987667899999999999999999                      99999999999999976


Q ss_pred             C
Q 026577          208 E  208 (236)
Q Consensus       208 ~  208 (236)
                      .
T Consensus        63 ~   63 (141)
T PRK15472         63 L   63 (141)
T ss_pred             e
Confidence            4

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.48  E-value=4.5e-13  Score=104.38  Aligned_cols=59  Identities=39%  Similarity=0.518  Sum_probs=49.5

Q ss_pred             EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      |++++. .++++||+||+.....++|+|.||||++|++|+                      +.+||+||+.||||+...
T Consensus         3 v~~vi~-~~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~----------------------~~~aa~REl~EEtGl~~~   59 (117)
T cd04691           3 VVGVLF-SDDKVLLERRSLTKNADPGKLNIPGGHIEAGES----------------------QEEALLREVQEELGVDPL   59 (117)
T ss_pred             EEEEEE-ECCEEEEEEeCCCCCCCCCeEECcceeecCCCC----------------------HHHHHHHHHHHHHCCCcc
Confidence            344555 458999999986654689999999999999998                      999999999999999864


Q ss_pred             CC
Q 026577          209 SL  210 (236)
Q Consensus       209 ~l  210 (236)
                      .+
T Consensus        60 ~~   61 (117)
T cd04691          60 SY   61 (117)
T ss_pred             cc
Confidence            43

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=2.6e-13  Score=110.17  Aligned_cols=76  Identities=32%  Similarity=0.583  Sum_probs=62.3

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++|++++++.++++||+||+.....++|+|.+||||++++|+                      +.++|+||+.||+|+.
T Consensus         2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~----------------------~~~aa~RE~~EE~gi~   59 (143)
T cd04694           2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGEN----------------------LLEAGLRELNEETGLT   59 (143)
T ss_pred             cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCC----------------------HHHHHHHHHHHHHCCC
Confidence            467888888999999999997766789999999999999998                      9999999999999998


Q ss_pred             CCCCc-cceeEEeeeeeec
Q 026577          207 SESLV-SYSLLIRYQVVVP  224 (236)
Q Consensus       207 ~~~l~-~~~ll~~~~~~~~  224 (236)
                      +.... ...++++|...++
T Consensus        60 ~~~~~~~~~~l~~~~~~~~   78 (143)
T cd04694          60 LDPIDKSWQVLGLWESVYP   78 (143)
T ss_pred             ccccccceeEEeeeccccc
Confidence            86431 1345666655444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=3.5e-13  Score=105.74  Aligned_cols=60  Identities=33%  Similarity=0.674  Sum_probs=52.9

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      .++|++++++.+++|||+||...   ++|.|.||||++|++|+                      +.+||.||+.||||+
T Consensus         2 ~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt----------------------~~~aa~RE~~EE~Gl   56 (127)
T cd04670           2 TVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGED----------------------IFDGAVREVLEETGI   56 (127)
T ss_pred             eeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCC----------------------HHHHHHHHHHHHHCC
Confidence            46788899988899999987643   67999999999999998                      999999999999999


Q ss_pred             CCCCC
Q 026577          206 PSESL  210 (236)
Q Consensus       206 ~~~~l  210 (236)
                      .....
T Consensus        57 ~~~~~   61 (127)
T cd04670          57 DTEFV   61 (127)
T ss_pred             Cccee
Confidence            88643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=4.3e-13  Score=105.71  Aligned_cols=62  Identities=23%  Similarity=0.323  Sum_probs=55.3

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEe-ccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~f-PGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++.++++++||+|||+||+......||+|.+ ||||++++|+                      +.++|+||+.||||++
T Consensus         2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~----------------------~~~aa~REl~EEtGl~   59 (126)
T cd04697           2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGES----------------------YLQNAQRELEEELGID   59 (126)
T ss_pred             eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCC----------------------HHHHHHHHHHHHHCCC
Confidence            5678889999999999999776678999998 6999999998                      9999999999999999


Q ss_pred             CCCCc
Q 026577          207 SESLV  211 (236)
Q Consensus       207 ~~~l~  211 (236)
                      ...+.
T Consensus        60 ~~~l~   64 (126)
T cd04697          60 GVQLT   64 (126)
T ss_pred             ccccE
Confidence            87553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.46  E-value=4.9e-13  Score=105.06  Aligned_cols=60  Identities=25%  Similarity=0.510  Sum_probs=53.1

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      .+|.+++.+++|++||++|+..  ..+|.|.+|||++|++|+                      +.++|+||+.||||++
T Consensus         2 ~av~~~i~~~~~~vLL~~r~~~--~~~~~w~~PgG~ve~gEs----------------------~~~aa~RE~~EEtGl~   57 (130)
T cd04681           2 AAVGVLILNEDGELLVVRRARE--PGKGTLDLPGGFVDPGES----------------------AEEALIREIREETGLK   57 (130)
T ss_pred             ceEEEEEEcCCCcEEEEEecCC--CCCCcEeCCceeecCCCC----------------------HHHHHHHHHHHHhCCc
Confidence            3677888888999999999854  358999999999999998                      9999999999999998


Q ss_pred             CCCC
Q 026577          207 SESL  210 (236)
Q Consensus       207 ~~~l  210 (236)
                      ...+
T Consensus        58 ~~~~   61 (130)
T cd04681          58 VTEL   61 (130)
T ss_pred             ccce
Confidence            8754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.46  E-value=8.9e-13  Score=103.57  Aligned_cols=60  Identities=33%  Similarity=0.546  Sum_probs=53.5

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++|+++|.+.+|++||.||...  ..+|.|.+|||+++++|+                      +.+|+.||++||||+.
T Consensus         3 ~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~PGG~ve~gEt----------------------~~~Aa~REl~EE~Gl~   58 (129)
T cd04678           3 VGVGVFVLNPKGKVLLGKRKGS--HGAGTWALPGGHLEFGES----------------------FEECAAREVLEETGLH   58 (129)
T ss_pred             eEEEEEEECCCCeEEEEeccCC--CCCCeEECCcccccCCCC----------------------HHHHHHHHHHHHhCCc
Confidence            4788888888899999999854  568999999999999999                      9999999999999998


Q ss_pred             CCCC
Q 026577          207 SESL  210 (236)
Q Consensus       207 ~~~l  210 (236)
                      +..+
T Consensus        59 ~~~~   62 (129)
T cd04678          59 IENV   62 (129)
T ss_pred             ccce
Confidence            8754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.46  E-value=6.6e-13  Score=103.30  Aligned_cols=58  Identities=36%  Similarity=0.613  Sum_probs=50.4

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      |+.+++.. ++++||+||+...  ++|.|.+|||++|++|+                      +.+||+||+.||||+..
T Consensus         2 ~~~~ii~~-~~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~----------------------~~~aa~RE~~EEtGl~~   56 (128)
T cd04684           2 GAYAVIPR-DGKLLLIQKNGGP--YEGRWDLPGGGIEPGES----------------------PEEALHREVLEETGLTV   56 (128)
T ss_pred             eeEEEEEe-CCEEEEEEccCCC--CCCeEECCCcccCCCCC----------------------HHHHHHHHHHHHhCcEe
Confidence            56677764 5999999998653  78999999999999998                      99999999999999987


Q ss_pred             CCC
Q 026577          208 ESL  210 (236)
Q Consensus       208 ~~l  210 (236)
                      ..+
T Consensus        57 ~~~   59 (128)
T cd04684          57 EIG   59 (128)
T ss_pred             ecc
Confidence            653

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.44  E-value=6.3e-13  Score=104.41  Aligned_cols=59  Identities=29%  Similarity=0.451  Sum_probs=52.8

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEec-cccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fP-GG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      .|.+++++.+|+|||+||+.....+||+|++| |||+|++|+                      + +||+||+.||||+.
T Consensus         2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~----------------------~-~aa~REl~EEtGl~   58 (127)
T cd04693           2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGET----------------------S-TAAEREVKEELGLE   58 (127)
T ss_pred             eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCC----------------------H-HHHHHHHHHHhCCC
Confidence            56778888899999999997766789999998 999999999                      9 99999999999999


Q ss_pred             CCC
Q 026577          207 SES  209 (236)
Q Consensus       207 ~~~  209 (236)
                      +..
T Consensus        59 ~~~   61 (127)
T cd04693          59 LDF   61 (127)
T ss_pred             cCh
Confidence            763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.44  E-value=9.7e-13  Score=103.07  Aligned_cols=59  Identities=27%  Similarity=0.504  Sum_probs=51.0

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      .+|++++.+.+|++||+||..    ++|.|.+|||++|++|+                      +.+||+||++||||+.
T Consensus         3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs----------------------~~~aa~REl~EEtGl~   56 (125)
T cd04696           3 VTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGET----------------------LEEALKREFREETGLK   56 (125)
T ss_pred             cEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCC----------------------HHHHHHHHHHHHhCCc
Confidence            356778888789999998763    46999999999999998                      9999999999999998


Q ss_pred             CCCCc
Q 026577          207 SESLV  211 (236)
Q Consensus       207 ~~~l~  211 (236)
                      +..+.
T Consensus        57 ~~~~~   61 (125)
T cd04696          57 LRDIK   61 (125)
T ss_pred             ccccc
Confidence            87543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.43  E-value=1.3e-12  Score=103.04  Aligned_cols=58  Identities=29%  Similarity=0.548  Sum_probs=51.2

Q ss_pred             EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      +++++++.+|++||+||...  ..+|.|.+|||++|++|+                      +.+||+||++||||+.+.
T Consensus         3 ~~~vv~~~~~~vLl~~r~~~--~~~~~w~lPgG~ve~gEt----------------------~~~aa~REl~EEtG~~~~   58 (123)
T cd04671           3 VAAVILNNQGEVLLIQEAKR--SCRGKWYLPAGRMEPGET----------------------IEEAVKREVKEETGLDCE   58 (123)
T ss_pred             EEEEEEcCCCEEEEEEecCC--CCCCeEECceeecCCCCC----------------------HHHHHHHHHHHHHCCeee
Confidence            56777778899999999854  458999999999999998                      999999999999999887


Q ss_pred             CC
Q 026577          209 SL  210 (236)
Q Consensus       209 ~l  210 (236)
                      ..
T Consensus        59 ~~   60 (123)
T cd04671          59 PT   60 (123)
T ss_pred             cc
Confidence            54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.42  E-value=8.2e-13  Score=103.92  Aligned_cols=58  Identities=29%  Similarity=0.403  Sum_probs=51.6

Q ss_pred             EEEEEEEeC--CCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          128 GNGAVVETS--DKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       128 gv~~vl~t~--dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      .|.+++.+.  ++++||+||++.   ++|.|.+||||+|++|+                      +.+||+||+.||||+
T Consensus         3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es----------------------~~~aa~RE~~EE~Gl   57 (129)
T cd04664           3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGES----------------------PAEAARREVAEETGL   57 (129)
T ss_pred             EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCC----------------------HHHHHHHHHHHHHCC
Confidence            567778877  899999999964   78999999999999999                      999999999999999


Q ss_pred             CCCCC
Q 026577          206 PSESL  210 (236)
Q Consensus       206 ~~~~l  210 (236)
                      ....+
T Consensus        58 ~~~~~   62 (129)
T cd04664          58 DPERL   62 (129)
T ss_pred             Chhhe
Confidence            87543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.42  E-value=1.7e-12  Score=104.61  Aligned_cols=60  Identities=27%  Similarity=0.393  Sum_probs=52.2

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      .+|++++++.++++||++|...  ..+|.|.||||++|++|+                      +.+||+||++||||+.
T Consensus        14 ~av~~vv~~~~~~vLL~~r~~~--~~~~~w~lPgG~ve~gEt----------------------~~~aa~REl~EEtGl~   69 (142)
T cd04700          14 RAAGAVILNERNDVLLVQEKGG--PKKGLWHIPSGAVEDGEF----------------------PQDAAVREACEETGLR   69 (142)
T ss_pred             eeEEEEEEeCCCcEEEEEEcCC--CCCCeEECCceecCCCCC----------------------HHHHHHHHHHHhhCce
Confidence            4677788888899999988643  458999999999999999                      9999999999999999


Q ss_pred             CCCC
Q 026577          207 SESL  210 (236)
Q Consensus       207 ~~~l  210 (236)
                      +..+
T Consensus        70 ~~~~   73 (142)
T cd04700          70 VRPV   73 (142)
T ss_pred             eecc
Confidence            8755

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.42  E-value=1.3e-12  Score=107.05  Aligned_cols=61  Identities=30%  Similarity=0.603  Sum_probs=52.5

Q ss_pred             EEEEEEEeCC--CeEEEEEEcCCCCCCCCeEEeccccCCCC-CCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          128 GNGAVVETSD--KKILLLQRSNNVGEFPGHFVFPGGHPEPQ-DAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       128 gv~~vl~t~d--g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~-e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      +|.+++.+.+  ++|||+||+.....++|.|.||||++|++ |+                      +.+||+||+.||||
T Consensus         4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs----------------------~~eaa~REl~EEtG   61 (157)
T cd03426           4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDED----------------------PVATALREAEEEIG   61 (157)
T ss_pred             EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCC----------------------HHHHHHHHHHHHhC
Confidence            5556666655  68999999977667899999999999999 88                      99999999999999


Q ss_pred             CCCCCC
Q 026577          205 VPSESL  210 (236)
Q Consensus       205 l~~~~l  210 (236)
                      +....+
T Consensus        62 l~~~~~   67 (157)
T cd03426          62 LPPDSV   67 (157)
T ss_pred             CCccce
Confidence            988754

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.42  E-value=1.3e-12  Score=101.01  Aligned_cols=58  Identities=34%  Similarity=0.530  Sum_probs=50.0

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      +|+++++. ++++||+||+..  .++|.|.||||++|++|+                      +.+||+||+.||||+.+
T Consensus         2 ~v~~ii~~-~~~vLl~~r~~~--~~~~~w~~PgG~ie~gE~----------------------~~~aa~RE~~EEtGl~~   56 (122)
T cd04673           2 AVGAVVFR-GGRVLLVRRANP--PDAGLWSFPGGKVELGET----------------------LEQAALRELLEETGLEA   56 (122)
T ss_pred             cEEEEEEE-CCEEEEEEEcCC--CCCCeEECCCcccCCCCC----------------------HHHHHHHHHHHhhCcEe
Confidence            56667774 689999999854  568999999999999998                      99999999999999997


Q ss_pred             CCC
Q 026577          208 ESL  210 (236)
Q Consensus       208 ~~l  210 (236)
                      ..+
T Consensus        57 ~~~   59 (122)
T cd04673          57 EVG   59 (122)
T ss_pred             eec
Confidence            644

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.42  E-value=5.2e-13  Score=107.80  Aligned_cols=57  Identities=30%  Similarity=0.386  Sum_probs=51.7

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ++.+|++++++.+|++||+||..    .+|.|++|||++|++|+                      +.+||+||++||||
T Consensus         6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lPgG~ve~gEs----------------------~~~aa~REl~EEtG   59 (148)
T PRK09438          6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSVTGSLEEGET----------------------PAQTAIREVKEETG   59 (148)
T ss_pred             CceEEEEEEEeCCCeEEEEEecC----CCCcEeCCcccCCCCCC----------------------HHHHHHHHHHHHhC
Confidence            56788999998999999999874    36899999999999998                      99999999999999


Q ss_pred             CCC
Q 026577          205 VPS  207 (236)
Q Consensus       205 l~~  207 (236)
                      +.+
T Consensus        60 l~~   62 (148)
T PRK09438         60 IDV   62 (148)
T ss_pred             cCc
Confidence            988

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.42  E-value=1.9e-12  Score=102.47  Aligned_cols=84  Identities=24%  Similarity=0.222  Sum_probs=60.8

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ++..++++++..++++||+||...  ...|.|.+|||++|++|+                      +.+++.||+.||||
T Consensus        11 ~~~~~v~~ii~~~~~vLL~kr~~~--~~~g~w~lPgG~ve~gE~----------------------~~~a~~REl~EEtG   66 (130)
T cd04511          11 NPKIIVGCVPEWEGKVLLCRRAIE--PRHGFWTLPAGFMENGET----------------------TEQGALRETWEEAG   66 (130)
T ss_pred             CCcEEEEEEEecCCEEEEEEecCC--CCCCeEECCcccccCCCC----------------------HHHHHHHHHHHHhC
Confidence            443333334445689999999854  467999999999999999                      99999999999999


Q ss_pred             CCCCCCccceeEEeeeeeecceeeeeEEEEe
Q 026577          205 VPSESLVSYSLLIRYQVVVPALLLCGYMCTS  235 (236)
Q Consensus       205 l~~~~l~~~~ll~~~~~~~~~~~~~~~~~~~  235 (236)
                      +++...   .++.++...-...+...|+|+.
T Consensus        67 l~~~~~---~~~~~~~~~~~~~~~~~f~~~~   94 (130)
T cd04511          67 ARVEID---GLYAVYSVPHISQVYMFYRARL   94 (130)
T ss_pred             CEEEee---eEEEEEecCCceEEEEEEEEEE
Confidence            987532   3445554433345566777764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.41  E-value=2.9e-12  Score=99.63  Aligned_cols=79  Identities=20%  Similarity=0.486  Sum_probs=59.7

Q ss_pred             EEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCC
Q 026577          130 GAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSES  209 (236)
Q Consensus       130 ~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~  209 (236)
                      ++++.+.+|++|+.||+.. +.++|+|+||||++|++|+                      +.+++.||+.||||+.+..
T Consensus         8 ~~ii~~~~~~vll~rR~~~-~~~~g~w~~PgG~~~~gE~----------------------~~~a~~Re~~EE~gl~~~~   64 (129)
T PRK10776          8 VGIIRNPNNEIFITRRAAD-AHMAGKWEFPGGKIEAGET----------------------PEQALIRELQEEVGITVQH   64 (129)
T ss_pred             EEEEECCCCEEEEEEecCC-CCCCCeEECCceecCCCCC----------------------HHHHHHHHHHHHHCCceec
Confidence            3455667789999999865 5789999999999999998                      8899999999999998654


Q ss_pred             CccceeEEeeeeeecc--eeeeeEEEE
Q 026577          210 LVSYSLLIRYQVVVPA--LLLCGYMCT  234 (236)
Q Consensus       210 l~~~~ll~~~~~~~~~--~~~~~~~~~  234 (236)
                      .   .++..+.+.++.  +.+..|.|+
T Consensus        65 ~---~~~~~~~~~~~~~~~~~~~~~~~   88 (129)
T PRK10776         65 A---TLFEKLEYEFPDRHITLWFWLVE   88 (129)
T ss_pred             c---eEEEEEEeeCCCcEEEEEEEEEE
Confidence            2   234445555554  334455554

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.41  E-value=2.1e-12  Score=103.95  Aligned_cols=60  Identities=27%  Similarity=0.366  Sum_probs=53.9

Q ss_pred             eEEEEEEEeCC---CeEEEEEEcCCCCCCCCeEEe-ccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHh
Q 026577          127 LGNGAVVETSD---KKILLLQRSNNVGEFPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE  202 (236)
Q Consensus       127 lgv~~vl~t~d---g~vLl~rRs~~~~~~~G~~~f-PGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE  202 (236)
                      +.|.++|++.+   +++|+.+|+.....+||.|++ |||++|++|+                      +.+||+||+.||
T Consensus         3 ~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt----------------------~~~aa~REl~EE   60 (144)
T cd04692           3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGET----------------------PLEDGIRELEEE   60 (144)
T ss_pred             eEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCC----------------------HHHHHHHHHHHH
Confidence            46778888877   999999999876789999999 5999999998                      999999999999


Q ss_pred             hCCCCC
Q 026577          203 IGVPSE  208 (236)
Q Consensus       203 tGl~~~  208 (236)
                      |||.+.
T Consensus        61 tGl~~~   66 (144)
T cd04692          61 LGLDVS   66 (144)
T ss_pred             hCCCCC
Confidence            999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.41  E-value=1.8e-12  Score=99.99  Aligned_cols=78  Identities=24%  Similarity=0.375  Sum_probs=58.9

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      ++.+++.+.+|++||+||+..     +.|.||||++|++|+                      +.+||+||+.||||+.+
T Consensus         2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~PgG~ve~gEt----------------------~~~aa~REl~EEtG~~~   54 (120)
T cd04680           2 GARAVVTDADGRVLLVRHTYG-----PGWYLPGGGLERGET----------------------FAEAARRELLEELGIRL   54 (120)
T ss_pred             ceEEEEECCCCeEEEEEECCC-----CcEeCCCCcCCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence            577888888899999998743     389999999999998                      99999999999999998


Q ss_pred             C-CCccceeEEeeeeee--cceeeeeEEEEe
Q 026577          208 E-SLVSYSLLIRYQVVV--PALLLCGYMCTS  235 (236)
Q Consensus       208 ~-~l~~~~ll~~~~~~~--~~~~~~~~~~~~  235 (236)
                      . .+   .+++.+....  .......|+|..
T Consensus        55 ~~~~---~~~~~~~~~~~~~~~~~~~f~~~~   82 (120)
T cd04680          55 AVVA---ELLGVYYHSASGSWDHVIVFRARA   82 (120)
T ss_pred             cccc---ceEEEEecCCCCCceEEEEEEecc
Confidence            7 43   2344433322  234455666643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.40  E-value=1.9e-12  Score=101.38  Aligned_cols=76  Identities=21%  Similarity=0.325  Sum_probs=56.0

Q ss_pred             EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      +++++++.+|++||+||...   ..+.|.||||++|++|+                      +.+|++||++||||+.+.
T Consensus         3 ~~~ii~~~~~~vLL~~r~~~---~~~~w~lPGG~ve~gEs----------------------~~~a~~REl~EEtGl~~~   57 (121)
T cd04669           3 ASIVIINDQGEILLIRRIKP---GKTYYVFPGGGIEEGET----------------------PEEAAKREALEELGLDVR   57 (121)
T ss_pred             eEEEEEeCCCEEEEEEEecC---CCCcEECCceeccCCCC----------------------HHHHHHHHHHHhhCeeEe
Confidence            45677766699999999743   25899999999999999                      999999999999999985


Q ss_pred             CCccceeEEeeeeeecceeeeeEEEE
Q 026577          209 SLVSYSLLIRYQVVVPALLLCGYMCT  234 (236)
Q Consensus       209 ~l~~~~ll~~~~~~~~~~~~~~~~~~  234 (236)
                      . .  .++..+..  +......|.|+
T Consensus        58 ~-~--~~~~~~~~--~~~~~~~f~~~   78 (121)
T cd04669          58 V-E--EIFLIVNQ--NGRTEHYFLAR   78 (121)
T ss_pred             e-e--eEEEEEee--CCcEEEEEEEE
Confidence            3 2  23333332  33334455554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.40  E-value=3.3e-12  Score=100.99  Aligned_cols=56  Identities=34%  Similarity=0.493  Sum_probs=48.1

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      +|++++. .|+++||+||...   .++.|.||||++|++|+                      +.+||.||++||||+.+
T Consensus         2 ~v~~ii~-~~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs----------------------~~~aa~REl~EEtGl~~   55 (134)
T cd03675           2 TVAAVVE-RDGRFLLVEEETD---GGLVFNQPAGHLEPGES----------------------LIEAAVRETLEETGWHV   55 (134)
T ss_pred             eEEEEEE-ECCEEEEEEEccC---CCceEECCCccCCCCCC----------------------HHHHHHHHHHHHHCccc
Confidence            4555554 6789999999754   56899999999999998                      99999999999999988


Q ss_pred             CC
Q 026577          208 ES  209 (236)
Q Consensus       208 ~~  209 (236)
                      ..
T Consensus        56 ~~   57 (134)
T cd03675          56 EP   57 (134)
T ss_pred             cc
Confidence            64

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.40  E-value=1.9e-12  Score=106.94  Aligned_cols=64  Identities=25%  Similarity=0.397  Sum_probs=56.9

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEec-cccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fP-GG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ..+|++++.+++|++||+||+.....+||.|++| |||+|++|+                      +.+||+||+.||||
T Consensus        30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt----------------------~~eaa~REl~EEtG   87 (165)
T cd02885          30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEG----------------------VKDAAQRRLREELG   87 (165)
T ss_pred             eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCC----------------------HHHHHHHHHHHHhC
Confidence            5577788888899999999997766899999996 899999999                      99999999999999


Q ss_pred             CCCCCCc
Q 026577          205 VPSESLV  211 (236)
Q Consensus       205 l~~~~l~  211 (236)
                      +.+..+.
T Consensus        88 l~~~~~~   94 (165)
T cd02885          88 ITGDLLE   94 (165)
T ss_pred             CCccchh
Confidence            9987553

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.40  E-value=2.4e-12  Score=102.11  Aligned_cols=62  Identities=21%  Similarity=0.255  Sum_probs=54.0

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      +-+|.+++++.++++||++|... +..++.|++|||++|++|+                      +.+||+||+.||||+
T Consensus         2 ~~~v~v~~~~~~~~iLl~~~~~~-~~~~~~w~~PgG~ve~gEs----------------------~~~aa~RE~~EE~Gl   58 (137)
T cd03424           2 PDAVAVLPYDDDGKVVLVRQYRP-PVGGWLLELPAGLIDPGED----------------------PEEAARRELEEETGY   58 (137)
T ss_pred             CCEEEEEEEcCCCeEEEEEeeec-CCCCEEEEeCCccCCCCCC----------------------HHHHHHHHHHHHHCC
Confidence            45788899999999999987644 3567899999999999998                      999999999999999


Q ss_pred             CCCCC
Q 026577          206 PSESL  210 (236)
Q Consensus       206 ~~~~l  210 (236)
                      ....+
T Consensus        59 ~~~~~   63 (137)
T cd03424          59 EAGDL   63 (137)
T ss_pred             Cccce
Confidence            98744

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.40  E-value=1.3e-12  Score=101.71  Aligned_cols=61  Identities=33%  Similarity=0.551  Sum_probs=55.4

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      ..+|++++.+.+|+|||+||+......+|.|.+|||+++++|+                      +.+||+||+.||||+
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~----------------------~~~aa~REl~EE~g~   59 (134)
T PF00293_consen    2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGES----------------------PEEAARRELKEETGL   59 (134)
T ss_dssp             EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSH----------------------HHHHHHHHHHHHHSE
T ss_pred             CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCc----------------------hhhhHHhhhhhcccc
Confidence            3578899999999999999997755688999999999999998                      999999999999999


Q ss_pred             CCC
Q 026577          206 PSE  208 (236)
Q Consensus       206 ~~~  208 (236)
                      .+.
T Consensus        60 ~~~   62 (134)
T PF00293_consen   60 DVS   62 (134)
T ss_dssp             EEE
T ss_pred             eec
Confidence            984

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.39  E-value=1.9e-12  Score=100.90  Aligned_cols=62  Identities=29%  Similarity=0.544  Sum_probs=53.1

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++|++++.+.+|++||.||+.....++|+|.||||++|++|+                      +.+||+||+.||||+.
T Consensus         2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs----------------------~~~aa~RE~~EE~Gl~   59 (129)
T cd04699           2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGET----------------------FEEALKREVYEETGLT   59 (129)
T ss_pred             ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCC----------------------HHHHHHHHHHHhhCcE
Confidence            467777777769999999986644579999999999999998                      8999999999999998


Q ss_pred             CCCC
Q 026577          207 SESL  210 (236)
Q Consensus       207 ~~~l  210 (236)
                      +...
T Consensus        60 ~~~~   63 (129)
T cd04699          60 VTPF   63 (129)
T ss_pred             EEee
Confidence            7643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.38  E-value=2.9e-12  Score=98.85  Aligned_cols=54  Identities=26%  Similarity=0.561  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      +++++++.+|++||+||..     .|.|.||||+++++|+                      +.+||+||+.||||+...
T Consensus         3 ~~~~v~~~~~~vLl~~r~~-----~~~w~~PgG~ve~~Es----------------------~~~aa~REl~EEtGl~~~   55 (118)
T cd04690           3 AAALILVRDGRVLLVRKRG-----TDVFYLPGGKIEAGET----------------------PLQALIRELSEELGLDLD   55 (118)
T ss_pred             EEEEEEecCCeEEEEEECC-----CCcEECCCCccCCCCC----------------------HHHHHHHHHHHHHCCccC
Confidence            4567777899999999873     3789999999999998                      999999999999999876


Q ss_pred             C
Q 026577          209 S  209 (236)
Q Consensus       209 ~  209 (236)
                      .
T Consensus        56 ~   56 (118)
T cd04690          56 P   56 (118)
T ss_pred             h
Confidence            5

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.38  E-value=1.6e-12  Score=105.17  Aligned_cols=58  Identities=26%  Similarity=0.389  Sum_probs=52.0

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      ..+|++++++.+|++||+||+...    |.|.+|||++|++|+                      +.++|+||+.||||+
T Consensus         3 ~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~PgG~~e~gE~----------------------~~~aA~REv~EEtGl   56 (147)
T cd03671           3 RPNVGVVLFNEDGKVFVGRRIDTP----GAWQFPQGGIDEGED----------------------PEQAALRELEEETGL   56 (147)
T ss_pred             CceEEEEEEeCCCEEEEEEEcCCC----CCEECCcCCCCCCcC----------------------HHHHHHHHHHHHHCC
Confidence            357888888889999999999653    899999999999998                      999999999999999


Q ss_pred             CCCC
Q 026577          206 PSES  209 (236)
Q Consensus       206 ~~~~  209 (236)
                      .+..
T Consensus        57 ~~~~   60 (147)
T cd03671          57 DPDS   60 (147)
T ss_pred             CcCc
Confidence            9764

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.37  E-value=3.9e-12  Score=103.55  Aligned_cols=68  Identities=29%  Similarity=0.499  Sum_probs=55.3

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++|++++. .+|+|||+||.+.  .++|+|.+|||++|.+|+                      +.++|+||++||||+.
T Consensus        11 ~~v~~~i~-~~~~iLLvrR~~~--p~~g~WalPGG~ve~GEt----------------------~eeaa~REl~EETgL~   65 (145)
T COG1051          11 VAVGALIV-RNGRILLVRRANE--PGAGYWALPGGFVEIGET----------------------LEEAARRELKEETGLR   65 (145)
T ss_pred             eeeeEEEE-eCCEEEEEEecCC--CCCCcEeCCCccCCCCCC----------------------HHHHHHHHHHHHhCCc
Confidence            34554444 6679999999966  678999999999999999                      9999999999999999


Q ss_pred             CCCCccceeEEeeeee
Q 026577          207 SESLVSYSLLIRYQVV  222 (236)
Q Consensus       207 ~~~l~~~~ll~~~~~~  222 (236)
                      +..+   .++.++...
T Consensus        66 ~~~~---~~~~v~~~~   78 (145)
T COG1051          66 VRVL---ELLAVFDDP   78 (145)
T ss_pred             ccce---eEEEEecCC
Confidence            6654   456666555

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.37  E-value=4.5e-12  Score=106.65  Aligned_cols=64  Identities=27%  Similarity=0.483  Sum_probs=55.7

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEec-cccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fP-GG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ..+|++++++.+|+|||+||+.....+||.|++| |||+|++|+                      +.+||+||+.||||
T Consensus        34 h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt----------------------~~~aa~REl~EEtG   91 (184)
T PRK03759         34 HLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGES----------------------LEDAVIRRCREELG   91 (184)
T ss_pred             eeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCC----------------------HHHHHHHHHHHHhC
Confidence            4567778888899999999987666789999986 899999998                      99999999999999


Q ss_pred             CCCCCCc
Q 026577          205 VPSESLV  211 (236)
Q Consensus       205 l~~~~l~  211 (236)
                      +.+..+.
T Consensus        92 l~~~~~~   98 (184)
T PRK03759         92 VEITDLE   98 (184)
T ss_pred             CCccccc
Confidence            9886543

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.36  E-value=1e-11  Score=98.14  Aligned_cols=69  Identities=30%  Similarity=0.435  Sum_probs=53.3

Q ss_pred             EEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCC
Q 026577          130 GAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSES  209 (236)
Q Consensus       130 ~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~  209 (236)
                      .++++..+|++||.||... +.++|+|.||||++|++|+                      ..++++||+.||||+.+..
T Consensus         7 ~~~ii~~~~~vLL~~R~~~-~~~~g~w~~PgG~ve~gE~----------------------~~~a~~RE~~EE~Gl~~~~   63 (135)
T PRK10546          7 VAAIIERDGKILLAQRPAH-SDQAGLWEFAGGKVEPGES----------------------QPQALIRELREELGIEATV   63 (135)
T ss_pred             EEEEEecCCEEEEEEccCC-CCCCCcEECCcccCCCCCC----------------------HHHHHHHHHHHHHCCcccc
Confidence            3344457889999999854 4789999999999999998                      8899999999999998763


Q ss_pred             CccceeEEeeeeeec
Q 026577          210 LVSYSLLIRYQVVVP  224 (236)
Q Consensus       210 l~~~~ll~~~~~~~~  224 (236)
                      .   .++....+.++
T Consensus        64 ~---~~~~~~~~~~~   75 (135)
T PRK10546         64 G---EYVASHQREVS   75 (135)
T ss_pred             c---eeEEEEEEecC
Confidence            2   23444444444

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.36  E-value=6.1e-12  Score=99.65  Aligned_cols=55  Identities=31%  Similarity=0.423  Sum_probs=47.4

Q ss_pred             EEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          132 VVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       132 vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      +++..+|++||++|+...  ++|.|.+|||++|++|+                      +.+||+||+.||||+....+
T Consensus         6 ~~i~~~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs----------------------~~~aa~RE~~EEtGl~~~~~   60 (137)
T cd03427           6 CFIKDPDKVLLLNRKKGP--GWGGWNGPGGKVEPGET----------------------PEECAIRELKEETGLTIDNL   60 (137)
T ss_pred             EEEEECCEEEEEEecCCC--CCCeEeCCceeCCCCCC----------------------HHHHHHHHHHHhhCeEeecc
Confidence            334456899999999653  78999999999999998                      99999999999999988754

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>PLN02325 nudix hydrolase

Probab=99.36  E-value=9.7e-12  Score=100.78  Aligned_cols=60  Identities=27%  Similarity=0.378  Sum_probs=50.6

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      .+++.++++ .+|+|||+||+..  ...|+|.+|||++|++|+                      +.++|+||++||||+
T Consensus         9 ~~~v~~vi~-~~~~vLL~rr~~~--~~~g~W~lPGG~ve~gEs----------------------~~~aa~REv~EEtGl   63 (144)
T PLN02325          9 RVAVVVFLL-KGNSVLLGRRRSS--IGDSTFALPGGHLEFGES----------------------FEECAAREVKEETGL   63 (144)
T ss_pred             eEEEEEEEE-cCCEEEEEEecCC--CCCCeEECCceeCCCCCC----------------------HHHHHHHHHHHHHCC
Confidence            356666666 4689999999854  445899999999999999                      999999999999999


Q ss_pred             CCCCC
Q 026577          206 PSESL  210 (236)
Q Consensus       206 ~~~~l  210 (236)
                      .+..+
T Consensus        64 ~v~~~   68 (144)
T PLN02325         64 EIEKI   68 (144)
T ss_pred             CCcce
Confidence            98754

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.35  E-value=4.4e-12  Score=99.58  Aligned_cols=58  Identities=31%  Similarity=0.574  Sum_probs=50.6

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      ..++.+++++.++++||++|+..     |.|.||||+++++|+                      +.+||+||++||||+
T Consensus         7 ~~~~~~~v~~~~~~vLL~~r~~~-----~~w~~PgG~v~~gEt----------------------~~~aa~REl~EE~Gi   59 (132)
T cd04677           7 LVGAGVILLNEQGEVLLQKRSDT-----GDWGLPGGAMELGES----------------------LEETARRELKEETGL   59 (132)
T ss_pred             ccceEEEEEeCCCCEEEEEecCC-----CcEECCeeecCCCCC----------------------HHHHHHHHHHHHhCC
Confidence            34677778888899999998843     889999999999998                      999999999999999


Q ss_pred             CCCCC
Q 026577          206 PSESL  210 (236)
Q Consensus       206 ~~~~l  210 (236)
                      .....
T Consensus        60 ~~~~~   64 (132)
T cd04677          60 EVEEL   64 (132)
T ss_pred             eeeee
Confidence            88754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.34  E-value=6.5e-12  Score=103.23  Aligned_cols=62  Identities=21%  Similarity=0.417  Sum_probs=54.2

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEec-cccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fP-GG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ..+|++++++.+|++||.||+.....+||+|++| |||++++|.                        +||+||++||||
T Consensus        27 h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE~------------------------eaa~REl~EE~G   82 (158)
T TIGR02150        27 HRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGEL------------------------EAAIRRLREELG   82 (158)
T ss_pred             EEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCcccH------------------------HHHHHHHHHHHC
Confidence            3577788888899999999998777899999997 899999884                        899999999999


Q ss_pred             CCCCCCc
Q 026577          205 VPSESLV  211 (236)
Q Consensus       205 l~~~~l~  211 (236)
                      |.+..+.
T Consensus        83 l~~~~~~   89 (158)
T TIGR02150        83 IPADDVP   89 (158)
T ss_pred             CCccccc
Confidence            9987553

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.34  E-value=1.2e-11  Score=97.23  Aligned_cols=57  Identities=33%  Similarity=0.534  Sum_probs=48.4

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      ++++++. .++++||+||...   ..+.|.+|||++|++|+                      +.+||+||+.||||+.+
T Consensus         3 ~a~~iv~-~~~~vLl~~r~~~---~~~~~~lPGG~ve~gEt----------------------~~~aa~RE~~EEtGl~v   56 (128)
T cd04687           3 SAKAVII-KNDKILLIKHHDD---GGVWYILPGGGQEPGET----------------------LEDAAHRECKEEIGIDV   56 (128)
T ss_pred             EEEEEEE-ECCEEEEEEEEcC---CCCeEECCCcccCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence            5666666 5789999999743   24899999999999999                      99999999999999998


Q ss_pred             CCC
Q 026577          208 ESL  210 (236)
Q Consensus       208 ~~l  210 (236)
                      ...
T Consensus        57 ~~~   59 (128)
T cd04687          57 EIG   59 (128)
T ss_pred             ccC
Confidence            754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.33  E-value=1.4e-11  Score=93.55  Aligned_cols=80  Identities=31%  Similarity=0.532  Sum_probs=60.2

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      ++++++.+.++++||.||+..   ++|+|.||||+++++|+                      +.++|+||+.||+|+..
T Consensus         2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~----------------------~~~~a~RE~~EE~Gl~~   56 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGET----------------------LEEAAIREVREETGLDV   56 (123)
T ss_pred             ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCC----------------------HHHHHHHHHHHhhCccc
Confidence            466777777799999999965   78999999999999998                      89999999999999987


Q ss_pred             CCCccceeEEeeeeeec----ceeeeeEEEEe
Q 026577          208 ESLVSYSLLIRYQVVVP----ALLLCGYMCTS  235 (236)
Q Consensus       208 ~~l~~~~ll~~~~~~~~----~~~~~~~~~~~  235 (236)
                      ...   .....+....+    ......|.|+.
T Consensus        57 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (123)
T cd02883          57 DVL---RLLGVYEVESPDEGEHAVVFVFLARL   85 (123)
T ss_pred             eee---eEEEEEEeeccCCCceEEEEEEEEEe
Confidence            622   22333333332    35556666653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.33  E-value=8.2e-12  Score=97.50  Aligned_cols=57  Identities=30%  Similarity=0.465  Sum_probs=48.5

Q ss_pred             EEEEEEEeCC---CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          128 GNGAVVETSD---KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       128 gv~~vl~t~d---g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ++++++++.+   ++|||+||...     |.|.||||+++++|+                      +.++|.||+.||||
T Consensus         3 ~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gEs----------------------~~~aa~REl~EEtG   55 (131)
T cd03673           3 AAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLPKGKLEPGET----------------------PPEAAVREVEEETG   55 (131)
T ss_pred             eEEEEEEEccCCCeEEEEEEcCCC-----CcccCCCCccCCCCC----------------------HHHHHHHHHhhhhC
Confidence            4566677665   89999998743     899999999999998                      99999999999999


Q ss_pred             CCCCCCc
Q 026577          205 VPSESLV  211 (236)
Q Consensus       205 l~~~~l~  211 (236)
                      +....+.
T Consensus        56 l~~~~~~   62 (131)
T cd03673          56 IRAEVGD   62 (131)
T ss_pred             CceEecc
Confidence            9887553

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.33  E-value=1.3e-11  Score=103.64  Aligned_cols=63  Identities=25%  Similarity=0.385  Sum_probs=54.2

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEE-eccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~-fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ..++.+++++++|++||.+|+.....+||+|. +||||++++|+                      +.+||+||+.||||
T Consensus        37 h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs----------------------~~eAA~REL~EEtG   94 (180)
T PRK15393         37 HRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQ----------------------LLESARREAEEELG   94 (180)
T ss_pred             eEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCC----------------------HHHHHHHHHHHHHC
Confidence            34667788888899999999977667899986 79999999998                      99999999999999


Q ss_pred             CCCCCC
Q 026577          205 VPSESL  210 (236)
Q Consensus       205 l~~~~l  210 (236)
                      +....+
T Consensus        95 l~~~~~  100 (180)
T PRK15393         95 IAGVPF  100 (180)
T ss_pred             CCCccc
Confidence            986544

>TIGR00586 mutt mutator mutT protein

Probab=99.32  E-value=2.6e-11  Score=94.60  Aligned_cols=80  Identities=21%  Similarity=0.338  Sum_probs=59.4

Q ss_pred             EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      +++++++.||++|+.||... +.++|+|+||||++|++|+                      ..+++.||+.||||+.+.
T Consensus         7 ~~~ii~~~~~~vLl~~R~~~-~~~~g~w~~Pgg~ve~ge~----------------------~~~~~~RE~~EE~g~~~~   63 (128)
T TIGR00586         7 AVGIIRNENGEIIITRRADG-HMFAKLLEFPGGKEEGGET----------------------PEQAVVRELEEEIGIPQH   63 (128)
T ss_pred             EEEEEECCCCEEEEEEEeCC-CCCCCeEECCCcccCCCCC----------------------HHHHHHHHHHHHHCCcce
Confidence            34555667789999999854 5889999999999999998                      889999999999999875


Q ss_pred             CCccceeEEeeeeeecc--eeeeeEEEE
Q 026577          209 SLVSYSLLIRYQVVVPA--LLLCGYMCT  234 (236)
Q Consensus       209 ~l~~~~ll~~~~~~~~~--~~~~~~~~~  234 (236)
                      ..   ..+....+.+++  +.+..|.|+
T Consensus        64 ~~---~~~~~~~h~~~~~~~~~~~~~~~   88 (128)
T TIGR00586        64 FS---EFEKLEYEFYPRHITLWFWLLER   88 (128)
T ss_pred             ee---eEEEEEEEECCCcEEEEEEEEEE
Confidence            32   224444455554  345555554

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.32  E-value=7.3e-12  Score=99.58  Aligned_cols=79  Identities=23%  Similarity=0.402  Sum_probs=57.2

Q ss_pred             EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      |.+.+.+.++++||+||+..   .+|.|.+|||++|++|+                      +.++|+||++||||+...
T Consensus         3 v~i~l~~~~~~vLL~~r~~~---~~~~w~lPgG~ie~gEt----------------------~~~aA~REl~EEtGl~~~   57 (131)
T cd03429           3 VIVLVIDGGDRILLARQPRF---PPGMYSLLAGFVEPGES----------------------LEEAVRREVKEEVGIRVK   57 (131)
T ss_pred             EEEEEEeCCCEEEEEEecCC---CCCcCcCCcccccCCCC----------------------HHHHHhhhhhhccCceee
Confidence            34455555589999999743   27999999999999998                      999999999999999987


Q ss_pred             CCccceeEEeeeeeecceeeeeEEEEe
Q 026577          209 SLVSYSLLIRYQVVVPALLLCGYMCTS  235 (236)
Q Consensus       209 ~l~~~~ll~~~~~~~~~~~~~~~~~~~  235 (236)
                      .+.   +++......+......|+|..
T Consensus        58 ~~~---~l~~~~~~~~~~~~~~f~~~~   81 (131)
T cd03429          58 NIR---YVGSQPWPFPSSLMLGFTAEA   81 (131)
T ss_pred             eeE---EEeecCCCCCceEEEEEEEEE
Confidence            543   333322223344455677653

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.32  E-value=1.2e-11  Score=96.76  Aligned_cols=54  Identities=28%  Similarity=0.460  Sum_probs=47.7

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++|.+++++ ++++||++|..     .|.|.+|||+++++|+                      +.+||+||++||||+.
T Consensus         3 ~~v~~~i~~-~~~vLL~~~~~-----~~~w~~PGG~ve~gEs----------------------~~~aa~REl~EEtG~~   54 (123)
T cd04672           3 VDVRAAIFK-DGKILLVREKS-----DGLWSLPGGWADVGLS----------------------PAENVVKEVKEETGLD   54 (123)
T ss_pred             ceEEEEEEE-CCEEEEEEEcC-----CCcEeCCccccCCCCC----------------------HHHHHHHHHHHHhCCe
Confidence            578888875 58999999874     4899999999999998                      9999999999999998


Q ss_pred             CC
Q 026577          207 SE  208 (236)
Q Consensus       207 ~~  208 (236)
                      ..
T Consensus        55 ~~   56 (123)
T cd04672          55 VK   56 (123)
T ss_pred             ee
Confidence            73

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.32  E-value=5.6e-12  Score=100.90  Aligned_cols=57  Identities=32%  Similarity=0.591  Sum_probs=50.0

Q ss_pred             eEEEEEEEeCC-CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          127 LGNGAVVETSD-KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       127 lgv~~vl~t~d-g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      +.+++++++.+ ++|||+||+.     .|.|.+||||+|++|+                      +.+||.||++||||+
T Consensus         3 ~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lPgG~ve~gE~----------------------~~~aa~REl~EEtGl   55 (138)
T cd03674           3 FTASAFVVNPDRGKVLLTHHRK-----LGSWLQPGGHIDPDES----------------------LLEAALRELREETGI   55 (138)
T ss_pred             EEEEEEEEeCCCCeEEEEEEcC-----CCcEECCceecCCCCC----------------------HHHHHHHHHHHHHCC
Confidence            46778888887 9999999874     3899999999999999                      999999999999999


Q ss_pred             CCCCC
Q 026577          206 PSESL  210 (236)
Q Consensus       206 ~~~~l  210 (236)
                      .+..+
T Consensus        56 ~~~~~   60 (138)
T cd03674          56 ELLGL   60 (138)
T ss_pred             Ccccc
Confidence            87644

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.32  E-value=2.1e-11  Score=95.44  Aligned_cols=54  Identities=24%  Similarity=0.387  Sum_probs=45.8

Q ss_pred             EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      |.++++ .|++|||+||+.     .+.|.+|||++|++|+                      +.+||.||+.||||+...
T Consensus         4 v~~vi~-~~~~vLl~~~~~-----~~~w~lPgG~ve~gEs----------------------~~~aa~RE~~EEtGl~~~   55 (126)
T cd04688           4 AAAIII-HNGKLLVQKNPD-----ETFYRPPGGGIEFGES----------------------SEEALIREFKEELGLKIE   55 (126)
T ss_pred             EEEEEE-ECCEEEEEEeCC-----CCeEECCCccccCCCC----------------------HHHHHHHHHHHHhCCcee
Confidence            445555 467999999874     4899999999999998                      999999999999999876


Q ss_pred             CC
Q 026577          209 SL  210 (236)
Q Consensus       209 ~l  210 (236)
                      ..
T Consensus        56 ~~   57 (126)
T cd04688          56 IT   57 (126)
T ss_pred             cc
Confidence            54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.31  E-value=1.1e-11  Score=96.10  Aligned_cols=55  Identities=42%  Similarity=0.697  Sum_probs=48.6

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      +|.+++.+.+|++||.||+..     |.|+||||+++++|+                      +.+||.||+.||||+..
T Consensus         4 ~v~~ii~~~~~~vLl~~r~~~-----~~w~lPgG~v~~~E~----------------------~~~aa~REl~EE~Gl~~   56 (129)
T cd04676           4 GVTAVVRDDEGRVLLIRRSDN-----GLWALPGGAVEPGES----------------------PADTAVREVREETGLDV   56 (129)
T ss_pred             eEEEEEECCCCeEEEEEecCC-----CcEECCeeccCCCCC----------------------HHHHHHHHHHHHhCcee
Confidence            566777777899999999854     899999999999998                      89999999999999987


Q ss_pred             CC
Q 026577          208 ES  209 (236)
Q Consensus       208 ~~  209 (236)
                      ..
T Consensus        57 ~~   58 (129)
T cd04676          57 EV   58 (129)
T ss_pred             Ee
Confidence            53

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.30  E-value=2.1e-11  Score=96.58  Aligned_cols=51  Identities=27%  Similarity=0.497  Sum_probs=45.6

Q ss_pred             eCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          135 TSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       135 t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      ..++++||+||+..   ++|.|.+|||++|++|+                      +.+||+||++||||+....+
T Consensus        11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs----------------------~~~aa~RE~~EEtGl~~~~~   61 (131)
T cd04695          11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGET----------------------AWQAALRELKEETGISLPEL   61 (131)
T ss_pred             CCCCEEEEEEecCC---CCCcEECCcccccCCCC----------------------HHHHHHHHHHHHhCCCcccc
Confidence            46789999999854   67999999999999998                      99999999999999988754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.30  E-value=2.7e-11  Score=95.52  Aligned_cols=73  Identities=26%  Similarity=0.418  Sum_probs=52.6

Q ss_pred             eCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCCccce
Q 026577          135 TSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLVSYS  214 (236)
Q Consensus       135 t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l~~~~  214 (236)
                      ..| ++||++|+..  ..+|.|.||||++|++|+                      +.+++.||+.||||+.... ....
T Consensus        13 ~~~-~~lL~~r~~~--~~~~~w~lPgG~ve~~E~----------------------~~~aa~REl~EE~g~~~~~-~~l~   66 (118)
T cd04674          13 VDD-GLLVIRRGIE--PGRGKLALPGGFIELGET----------------------WQDAVARELLEETGVAVDP-ADIR   66 (118)
T ss_pred             ECC-CEEEEEeecC--CCCCeEECCceecCCCCC----------------------HHHHHHHHHHHHHCCcccc-cEEE
Confidence            344 5777777754  457999999999999998                      9999999999999998763 2222


Q ss_pred             eEEeeeeeecceeeeeEEE
Q 026577          215 LLIRYQVVVPALLLCGYMC  233 (236)
Q Consensus       215 ll~~~~~~~~~~~~~~~~~  233 (236)
                      ....+......+++.+|++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~   85 (118)
T cd04674          67 LFDVRSAPDGTLLVFGLLP   85 (118)
T ss_pred             EEEEEecCCCeEEEEEEEe
Confidence            3333433334466777765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.29  E-value=2.9e-11  Score=96.00  Aligned_cols=53  Identities=32%  Similarity=0.534  Sum_probs=45.1

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      +|.++++ .+|+|||+||...     +.|.||||++|++|+                      +.+||+||++||||+..
T Consensus         2 ~~~~ii~-~~~~vLLv~~~~~-----~~w~lPgG~ve~gEt----------------------~~~aa~REl~EEtGl~~   53 (131)
T cd04686           2 AVRAIIL-QGDKILLLYTKRY-----GDYKFPGGGVEKGED----------------------HIEGLIRELQEETGATN   53 (131)
T ss_pred             cEEEEEE-ECCEEEEEEEcCC-----CcEECccccCCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence            4556666 4789999998742     689999999999998                      99999999999999986


Q ss_pred             C
Q 026577          208 E  208 (236)
Q Consensus       208 ~  208 (236)
                      .
T Consensus        54 ~   54 (131)
T cd04686          54 I   54 (131)
T ss_pred             c
Confidence            3

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.29  E-value=3.8e-11  Score=94.67  Aligned_cols=66  Identities=26%  Similarity=0.397  Sum_probs=49.9

Q ss_pred             EEEEEEeCC---CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          129 NGAVVETSD---KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       129 v~~vl~t~d---g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      +++++...+   +++||++|...     |.|.+|||++|++|+                      +.+||+||+.||||+
T Consensus         3 ~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~PgG~ve~~E~----------------------~~~aa~RE~~EEtG~   55 (122)
T cd04666           3 AGAIPYRETGGEVEVLLVTSRRT-----GRWIVPKGGPEKDES----------------------PAEAAAREAWEEAGV   55 (122)
T ss_pred             EEEEEEEEcCCceEEEEEEecCC-----CeEECCCCCcCCCCC----------------------HHHHHHHHHHHHhCC
Confidence            344555443   68999998743     899999999999998                      999999999999999


Q ss_pred             CCCCCccceeEEeeeeee
Q 026577          206 PSESLVSYSLLIRYQVVV  223 (236)
Q Consensus       206 ~~~~l~~~~ll~~~~~~~  223 (236)
                      ....+  ..+++.+....
T Consensus        56 ~~~~~--~~~l~~~~~~~   71 (122)
T cd04666          56 RGKIG--KRPLGRFEYRK   71 (122)
T ss_pred             ccccc--ceEEEEEEeee
Confidence            87644  13455554443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.28  E-value=2.1e-11  Score=95.59  Aligned_cols=56  Identities=39%  Similarity=0.638  Sum_probs=46.3

Q ss_pred             EEEEEEEeCCC---eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          128 GNGAVVETSDK---KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       128 gv~~vl~t~dg---~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      .++++++..++   ++||+||+.      |.|.+||||+|++|+                      +.++|+||+.||||
T Consensus         4 ~~g~vi~~~~~~~~~vLl~~~~~------~~w~~PgG~ve~gEs----------------------~~~aa~REl~EEtG   55 (130)
T cd03428           4 SAGAIIYRRLNNEIEYLLLQASY------GHWDFPKGHVEPGED----------------------DLEAALRETEEETG   55 (130)
T ss_pred             EEEEEEEEecCCCceEEEEEccC------CcCcCCcCCCCCCCC----------------------HHHHHHHHHHHHHC
Confidence            34455555444   689999884      889999999999998                      99999999999999


Q ss_pred             CCCCCCc
Q 026577          205 VPSESLV  211 (236)
Q Consensus       205 l~~~~l~  211 (236)
                      +....+.
T Consensus        56 l~~~~~~   62 (130)
T cd03428          56 ITAEQLF   62 (130)
T ss_pred             CChhhhh
Confidence            9988654

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.28  E-value=2.4e-11  Score=98.67  Aligned_cols=54  Identities=30%  Similarity=0.476  Sum_probs=45.7

Q ss_pred             EEEEEEeCC-CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          129 NGAVVETSD-KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       129 v~~vl~t~d-g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      +++++++.+ +++||+||...     +.|.||||++|++|+                      +.+||+||++||||+.+
T Consensus         4 ~gaii~~~~~~~vLLvr~~~~-----~~W~lPGG~ve~gEs----------------------~~~AA~REl~EETGl~v   56 (145)
T cd03672           4 YGAIILNEDLDKVLLVKGWKS-----KSWSFPKGKINKDED----------------------DHDCAIREVYEETGFDI   56 (145)
T ss_pred             eEEEEEeCCCCEEEEEEecCC-----CCEECCCccCCCCcC----------------------HHHHHHHHHHHhhCccc
Confidence            456666654 69999998633     589999999999998                      99999999999999987


Q ss_pred             CC
Q 026577          208 ES  209 (236)
Q Consensus       208 ~~  209 (236)
                      ..
T Consensus        57 ~~   58 (145)
T cd03672          57 SK   58 (145)
T ss_pred             ee
Confidence            64

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.28  E-value=2.3e-11  Score=95.14  Aligned_cols=56  Identities=34%  Similarity=0.593  Sum_probs=47.4

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      +.|.+++. .+|++||+||..     .+.|.+|||++|++|+                      +.+||+||++||||+.
T Consensus         2 ~~~~~vi~-~~~~vLlv~~~~-----~~~~~lPGG~ve~gEt----------------------~~~aa~REl~EEtGl~   53 (125)
T cd04689           2 LRARAIVR-AGNKVLLARVIG-----QPHYFLPGGHVEPGET----------------------AENALRRELQEELGVA   53 (125)
T ss_pred             eEEEEEEE-eCCEEEEEEecC-----CCCEECCCCcCCCCCC----------------------HHHHHHHHHHHHhCce
Confidence            35666666 678999999863     2789999999999998                      9999999999999998


Q ss_pred             CCCC
Q 026577          207 SESL  210 (236)
Q Consensus       207 ~~~l  210 (236)
                      +...
T Consensus        54 ~~~~   57 (125)
T cd04689          54 VSDG   57 (125)
T ss_pred             eecc
Confidence            8743

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.27  E-value=5.2e-11  Score=91.30  Aligned_cols=77  Identities=30%  Similarity=0.491  Sum_probs=56.9

Q ss_pred             EEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       131 ~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      +++.+++|++||.+|+... .++|+|.||||+++++|+                      +.++|.||+.||||+.+...
T Consensus         6 ~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p~G~~~~~e~----------------------~~~~a~Re~~EE~g~~~~~~   62 (124)
T cd03425           6 AIIIDDDGRILIAQRPAGK-HLGGLWEFPGGKVEPGET----------------------PEQALVRELREELGIEVEVG   62 (124)
T ss_pred             EEEECCCCEEEEEEeCCCC-CCCCeEeCCCcccCCCCC----------------------HHHHHHHHHHHhhCcEEecc
Confidence            4455566999999999664 789999999999999998                      89999999999999987643


Q ss_pred             ccceeEEeeeeeec--ceeeeeEEE
Q 026577          211 VSYSLLIRYQVVVP--ALLLCGYMC  233 (236)
Q Consensus       211 ~~~~ll~~~~~~~~--~~~~~~~~~  233 (236)
                      .   .+....+.++  ...+..|.|
T Consensus        63 ~---~~~~~~~~~~~~~~~~~~~~~   84 (124)
T cd03425          63 E---LLATVEHDYPDKRVTLHVFLV   84 (124)
T ss_pred             c---eEEEEEeeCCCCeEEEEEEEE
Confidence            2   2333333333  234445544

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.27  E-value=4.3e-11  Score=92.07  Aligned_cols=52  Identities=29%  Similarity=0.579  Sum_probs=44.6

Q ss_pred             EEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       131 ~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      +++...++++||+||..      |.|.||||+++++|+                      +.+||.||+.||||+....+
T Consensus         4 ~~i~~~~~~vLlv~r~~------~~w~~PgG~ve~gE~----------------------~~~aa~REl~EEtGl~~~~~   55 (112)
T cd04667           4 TVICRRGGRVLLVRKSG------SRWALPGGKIEPGET----------------------PLQAARRELQEETGLQGLDL   55 (112)
T ss_pred             EEEEecCCEEEEEEcCC------CcEeCCCCcCCCCCC----------------------HHHHHHHHHHHHhCCcccce
Confidence            34445678999999862      899999999999998                      99999999999999987644

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.26  E-value=9.3e-11  Score=93.92  Aligned_cols=61  Identities=28%  Similarity=0.449  Sum_probs=52.9

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      ++.+++++.+|+|||+|+.......++.|.+|||++|++|+                      +.+|+.||+.||||+..
T Consensus         2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~----------------------~~~a~~Re~~EE~G~~~   59 (133)
T cd04685           2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGES----------------------PEQAARRELREETGITV   59 (133)
T ss_pred             eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence            46778888999999999886543578999999999999998                      99999999999999998


Q ss_pred             CCC
Q 026577          208 ESL  210 (236)
Q Consensus       208 ~~l  210 (236)
                      ..+
T Consensus        60 ~~~   62 (133)
T cd04685          60 ADL   62 (133)
T ss_pred             ccc
Confidence            433

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.24  E-value=2.4e-11  Score=99.70  Aligned_cols=59  Identities=20%  Similarity=0.380  Sum_probs=52.1

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      ..+|++++++.+|++||+||+..    +|.|.+|||+++++|+                      +.+||.||+.||||+
T Consensus         8 ~~~v~~~i~~~~g~vLL~~r~~~----~~~w~~P~G~~~~gE~----------------------~~~aa~REl~EEtG~   61 (156)
T PRK00714          8 RPNVGIILLNRQGQVFWGRRIGQ----GHSWQFPQGGIDPGET----------------------PEQAMYRELYEEVGL   61 (156)
T ss_pred             CCeEEEEEEecCCEEEEEEEcCC----CCeEECCcccCCCCcC----------------------HHHHHHHHHHHHhCC
Confidence            34788889988999999999842    5899999999999998                      999999999999999


Q ss_pred             CCCCC
Q 026577          206 PSESL  210 (236)
Q Consensus       206 ~~~~l  210 (236)
                      ....+
T Consensus        62 ~~~~~   66 (156)
T PRK00714         62 RPEDV   66 (156)
T ss_pred             Cccce
Confidence            87644

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.24  E-value=3.4e-11  Score=106.72  Aligned_cols=77  Identities=22%  Similarity=0.330  Sum_probs=59.8

Q ss_pred             EEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       131 ~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      ++++..++++||.||...   .+|+|.+|||++|++|+                      +.+||+||++||||+.+..+
T Consensus       136 iv~V~~~~~iLL~rr~~~---~~g~wslPgG~vE~GEs----------------------~eeAa~REv~EEtGl~v~~~  190 (256)
T PRK00241        136 IVAVRRGDEILLARHPRH---RNGVYTVLAGFVEVGET----------------------LEQCVAREVMEESGIKVKNL  190 (256)
T ss_pred             EEEEEeCCEEEEEEccCC---CCCcEeCcccCCCCCCC----------------------HHHHhhhhhhhccCceeeee
Confidence            344556789999998744   27999999999999998                      99999999999999988754


Q ss_pred             ccceeEEeeeeeecceeeeeEEEEe
Q 026577          211 VSYSLLIRYQVVVPALLLCGYMCTS  235 (236)
Q Consensus       211 ~~~~ll~~~~~~~~~~~~~~~~~~~  235 (236)
                         .+++.....+|..++.+|++..
T Consensus       191 ---~~~~s~~~~~p~~lm~~f~a~~  212 (256)
T PRK00241        191 ---RYVGSQPWPFPHSLMLGFHADY  212 (256)
T ss_pred             ---EEEEeEeecCCCeEEEEEEEEe
Confidence               3344433346667777888764

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.23  E-value=2.5e-11  Score=101.49  Aligned_cols=61  Identities=21%  Similarity=0.347  Sum_probs=52.9

Q ss_pred             EEEEEEeCC--CeEEEEEEcCCCCCCCCeEE-eccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          129 NGAVVETSD--KKILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       129 v~~vl~t~d--g~vLl~rRs~~~~~~~G~~~-fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      +.+++.+++  +++++.||+..+..+||+|+ +||||++++|+                      +.+||+||+.|||||
T Consensus        37 ~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~----------------------~~~aA~REl~EE~Gl   94 (180)
T cd03676          37 LNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEG----------------------PEETLVKECDEEAGL   94 (180)
T ss_pred             EEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCC----------------------HHHHHHHHHHHHhCC
Confidence            334566665  89999999999889999995 89999999998                      999999999999999


Q ss_pred             CCCCCc
Q 026577          206 PSESLV  211 (236)
Q Consensus       206 ~~~~l~  211 (236)
                      +...+.
T Consensus        95 ~~~~~~  100 (180)
T cd03676          95 PEDLVR  100 (180)
T ss_pred             CHHHHh
Confidence            887543

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.22  E-value=2.3e-10  Score=96.32  Aligned_cols=61  Identities=25%  Similarity=0.373  Sum_probs=52.1

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      +|.++.++.++++||+|+... +..++.|+||||++|++|+                      +.++|+||+.||||+.+
T Consensus        49 ~v~v~~~~~~~~vlLvrq~r~-~~~~~~~elPaG~ve~gE~----------------------~~~aA~REl~EEtG~~~  105 (185)
T PRK11762         49 AVMIVPILDDDTLLLIREYAA-GTERYELGFPKGLIDPGET----------------------PLEAANRELKEEVGFGA  105 (185)
T ss_pred             EEEEEEEeCCCEEEEEEeecC-CCCCcEEEccceeCCCCCC----------------------HHHHHHHHHHHHHCCCC
Confidence            455666677889999998744 4678899999999999998                      99999999999999998


Q ss_pred             CCCc
Q 026577          208 ESLV  211 (236)
Q Consensus       208 ~~l~  211 (236)
                      ..+.
T Consensus       106 ~~l~  109 (185)
T PRK11762        106 RQLT  109 (185)
T ss_pred             cceE
Confidence            7653

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.15  E-value=3.6e-10  Score=103.91  Aligned_cols=58  Identities=29%  Similarity=0.484  Sum_probs=49.8

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      +.|.+++. .+|+|||+||+..  ..+|+|.+|||++|++|+                      +.+||+||+.|||||.
T Consensus       204 vtv~avv~-~~g~VLLvrR~~~--p~~g~W~lPGG~ve~gEt----------------------~~~Aa~REl~EETGl~  258 (340)
T PRK05379        204 VTVDAVVV-QSGHVLLVRRRAE--PGKGLWALPGGFLEQDET----------------------LLDACLRELREETGLK  258 (340)
T ss_pred             eEEEEEEE-ECCEEEEEEecCC--CCCCeEECCcccCCCCCC----------------------HHHHHHHHHHHHHCCc
Confidence            56666665 5789999999864  458999999999999998                      9999999999999998


Q ss_pred             CCC
Q 026577          207 SES  209 (236)
Q Consensus       207 ~~~  209 (236)
                      +..
T Consensus       259 v~~  261 (340)
T PRK05379        259 LPE  261 (340)
T ss_pred             ccc
Confidence            653

>PLN02709 nudix hydrolase

Probab=99.12  E-value=5e-10  Score=97.19  Aligned_cols=64  Identities=23%  Similarity=0.438  Sum_probs=51.3

Q ss_pred             ceEEEEEEEeC------CCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHH
Q 026577          126 PLGNGAVVETS------DKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREV  199 (236)
Q Consensus       126 ~lgv~~vl~t~------dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl  199 (236)
                      .-+|.+.+...      +.++||.+|+.....++|.|.||||++|++|..                     +.++|+||+
T Consensus        33 ~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~---------------------~~~tAlRE~   91 (222)
T PLN02709         33 SSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKD---------------------DIATALREA   91 (222)
T ss_pred             ccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCC---------------------HHHHHHHHH
Confidence            34555555532      238999999987667899999999999998751                     889999999


Q ss_pred             HHhhCCCCCCC
Q 026577          200 VEEIGVPSESL  210 (236)
Q Consensus       200 ~EEtGl~~~~l  210 (236)
                      .||+||+.+.+
T Consensus        92 ~EEiGl~~~~v  102 (222)
T PLN02709         92 REEIGLDPSLV  102 (222)
T ss_pred             HHHHCCCchhe
Confidence            99999988744

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.10  E-value=7.7e-10  Score=93.96  Aligned_cols=55  Identities=33%  Similarity=0.633  Sum_probs=46.5

Q ss_pred             CCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCCc
Q 026577          136 SDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLV  211 (236)
Q Consensus       136 ~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l~  211 (236)
                      .++++|+.||+..-..++|.|.||||++|++|..                     +.++|+||++||||+..+.+.
T Consensus        42 ~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~---------------------~~~tA~REl~EEtGl~~~~~~   96 (190)
T PRK10707         42 PQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDAS---------------------LIATALREAQEEVAIPPSAVE   96 (190)
T ss_pred             CCCEEEEEEeCCcccCCCCcEEcCCcccCCCccc---------------------HHHHHHHHHHHHHCCCccceE
Confidence            4569999999977667899999999999987541                     889999999999999987653

>PRK08999 hypothetical protein; Provisional

Probab=99.07  E-value=1.1e-09  Score=98.68  Aligned_cols=79  Identities=28%  Similarity=0.447  Sum_probs=58.7

Q ss_pred             EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      +.+++.+.||++||.||... +.++|+|+||||++|++|+                      +.+++.||++||||+.+.
T Consensus         8 ~~~vi~~~~~~vLL~kR~~~-~~~~g~w~~PgG~ve~gE~----------------------~~~aa~RE~~EE~Gl~~~   64 (312)
T PRK08999          8 AAGVIRDADGRILLARRPEG-KHQGGLWEFPGGKVEPGET----------------------VEQALARELQEELGIEVT   64 (312)
T ss_pred             EEEEEECCCCeEEEEEecCC-CCCCCeEECCccCCCCCCC----------------------HHHHHHHHHHHHhCCcee
Confidence            34455567789999999854 5899999999999999998                      889999999999999876


Q ss_pred             CCccceeEEeeeeeecc--eeeeeEEE
Q 026577          209 SLVSYSLLIRYQVVVPA--LLLCGYMC  233 (236)
Q Consensus       209 ~l~~~~ll~~~~~~~~~--~~~~~~~~  233 (236)
                      ..   ..+..+.+.+++  ..+..|.+
T Consensus        65 ~~---~~l~~~~h~~~~~~~~i~~y~~   88 (312)
T PRK08999         65 AA---RPLITVRHDYPDKRVRLDVRRV   88 (312)
T ss_pred             cc---eeEEEEEEEcCCCeEEEEEEEE
Confidence            43   224445555554  33444444

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.04  E-value=2.2e-09  Score=85.65  Aligned_cols=49  Identities=20%  Similarity=0.294  Sum_probs=40.8

Q ss_pred             CeEEEEEEcCC--CCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          138 KKILLLQRSNN--VGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       138 g~vLl~rRs~~--~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      .+|||++|...  .....|.|++|||++|.+|+                      +.++|+||+.||||+...
T Consensus        15 ~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~----------------------~~~aA~REl~EEtGl~~~   65 (126)
T cd04662          15 IEVLLVHPGGPFWANKDLGAWSIPKGEYTEGED----------------------PLLAAKREFSEETGFCVD   65 (126)
T ss_pred             EEEEEEEccCccccCCCCCEEECCcccCCCCcC----------------------HHHHHHHHHHHHhCCcce
Confidence            46999987432  12346899999999999998                      999999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.04  E-value=3.8e-10  Score=89.88  Aligned_cols=48  Identities=23%  Similarity=0.398  Sum_probs=41.7

Q ss_pred             CCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          136 SDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       136 ~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      .++++||+||+..   ..|.|.||||++|++|+                      +.+||+||+.||||+.+.
T Consensus        11 ~~~~~Llvk~~~~---~~g~W~fPgG~ve~gEt----------------------~~eaa~REl~EEtGl~v~   58 (132)
T cd04661          11 DDTLVLLVQQKVG---SQNHWILPQGKREEGET----------------------LRQTAERTLKELCGNNLK   58 (132)
T ss_pred             cCcEEEEEEeecC---CCCeeECCcccccCCCC----------------------HHHHHHHHHHHhhCCCce
Confidence            3568899998743   26899999999999999                      999999999999999765

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.98  E-value=5.4e-09  Score=82.30  Aligned_cols=53  Identities=34%  Similarity=0.525  Sum_probs=44.1

Q ss_pred             EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      |.+++. .++++||+++. .     +.|++|||++|++|+                      +.+||.||+.||+|+...
T Consensus         3 v~vi~~-~~~~vLl~~~~-~-----~~w~lPgG~ve~gE~----------------------~~~aa~REl~EE~G~~~~   53 (118)
T cd04665           3 VLVICF-YDDGLLLVRHK-D-----RGWEFPGGHVEPGET----------------------IEEAARREVWEETGAELG   53 (118)
T ss_pred             EEEEEE-ECCEEEEEEeC-C-----CEEECCccccCCCCC----------------------HHHHHHHHHHHHHCCccC
Confidence            444545 46799999876 2     679999999999998                      999999999999999986


Q ss_pred             CC
Q 026577          209 SL  210 (236)
Q Consensus       209 ~l  210 (236)
                      .+
T Consensus        54 ~~   55 (118)
T cd04665          54 SL   55 (118)
T ss_pred             ce
Confidence            44

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=98.97  E-value=2.4e-09  Score=90.51  Aligned_cols=65  Identities=18%  Similarity=0.232  Sum_probs=51.6

Q ss_pred             CceEEEEEEEeC-CCeEEEEEEcCCCC----CCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHH
Q 026577          125 SPLGNGAVVETS-DKKILLLQRSNNVG----EFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREV  199 (236)
Q Consensus       125 ~~lgv~~vl~t~-dg~vLl~rRs~~~~----~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl  199 (236)
                      ++-+|++++.+. ++++||+|+.+...    ..+..|+||||++|++|+                      +.+||+||+
T Consensus        43 ~~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~----------------------~~~aA~REl  100 (185)
T TIGR00052        43 RGNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGES----------------------PEDVARREA  100 (185)
T ss_pred             cCCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCC----------------------HHHHHHHHc
Confidence            344666676755 47999999764321    157899999999999998                      999999999


Q ss_pred             HHhhCCCCCCCc
Q 026577          200 VEEIGVPSESLV  211 (236)
Q Consensus       200 ~EEtGl~~~~l~  211 (236)
                      .||||+....+.
T Consensus       101 ~EEtG~~~~~~~  112 (185)
T TIGR00052       101 IEEAGYQVKNLR  112 (185)
T ss_pred             cccccceecceE
Confidence            999999997653

>PRK10880 adenine DNA glycosylase; Provisional

Probab=98.93  E-value=6.2e-11  Score=109.24  Aligned_cols=139  Identities=15%  Similarity=0.149  Sum_probs=88.4

Q ss_pred             ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhh-CCCcccC--ceEEEeeeEEecCCCCCCcceEEEec
Q 026577           13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQI-NKSLFNG--QKFRYGGHIMRGEGGSSVESHVCLHL   89 (236)
Q Consensus        13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~-~p~lfng--~kfrl~~~~~~~~~~~~~~~~~~l~l   89 (236)
                      +...||||++|++++++.+|++ |.|.  +|.+|.|+..+...- ...-...  +.++-....+.+.+.++++|++.|++
T Consensus       111 L~~LpGIG~~TA~aIl~~af~~-~~~i--VD~nV~RV~~Rl~~i~~~~~~~~~~~~l~~~~~~l~p~~~~~~~nqalm~l  187 (350)
T PRK10880        111 VAALPGVGRSTAGAILSLSLGK-HFPI--LDGNVKRVLARCYAVSGWPGKKEVENRLWQLSEQVTPAVGVERFNQAMMDL  187 (350)
T ss_pred             HhcCCCccHHHHHHHHHHHCCC-Ceec--ccHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Confidence            3467999999999999999999 7665  899999998865321 1100110  01211111222334567789999999


Q ss_pred             CCcccceeeccCCChhhhhhc----cCCC--Cc----hhhcc-ccCCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEe
Q 026577           90 GLTDYRTFVGTNLNPLWEKFL----VPSE--DD----VIQCQ-HTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVF  158 (236)
Q Consensus        90 g~T~Yr~fv~t~~~p~~~~~~----~~~~--~~----~~~~~-~~~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~f  158 (236)
                      |.+     +||+.+|.|..|.    |...  +.    +.+.+ -........++++..++++++.||... +.+.|+|+|
T Consensus       188 Ga~-----vC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~k~~k~~~~~~~~~~~~~~~~~~~~l~~r~~~-gl~~gl~~f  261 (350)
T PRK10880        188 GAM-----VCTRSKPKCELCPLQNGCIAYANHSWALYPGKKPKQTLPERTGYFLLLQHGDEVWLEQRPPS-GLWGGLFCF  261 (350)
T ss_pred             hHH-----hccCCCCCCCCCccHhhhHHHHcCCHhhCCCCCCCCCCCeEEEEEEEEEECCEEEEEECCcc-ChhhccccC
Confidence            999     9999999987652    2111  11    11111 111123333344446789999888844 799999999


Q ss_pred             cc
Q 026577          159 PG  160 (236)
Q Consensus       159 PG  160 (236)
                      |+
T Consensus       262 P~  263 (350)
T PRK10880        262 PQ  263 (350)
T ss_pred             CC
Confidence            96

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=98.93  E-value=1.2e-11  Score=112.58  Aligned_cols=142  Identities=14%  Similarity=0.220  Sum_probs=99.6

Q ss_pred             cCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhCCCcc---cCceEEEeeeEEecCCC-CCCcceEEEec
Q 026577           14 SCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLF---NGQKFRYGGHIMRGEGG-SSVESHVCLHL   89 (236)
Q Consensus        14 ~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~p~lf---ng~kfrl~~~~~~~~~~-~~~~~~~~l~l   89 (236)
                      ..+||||+||++++++.+||+ |.|.  +++||.|++.+.++-....=   .-++++-....+..++. ++++|+..|++
T Consensus       116 ~~LpGiG~yTa~Ail~~a~~~-~~~~--lDgNV~RVl~R~f~i~~~~~~~~~~~~~~~~~~~ll~p~~~~~~fnqammdl  192 (342)
T COG1194         116 AALPGVGPYTAGAILSFAFNQ-PEPV--LDGNVKRVLSRLFAISGDIGKPKTKKELWELAEQLLTPDRRPGDFNQAMMDL  192 (342)
T ss_pred             HhCCCCcHHHHHHHHHHHhCC-CCce--eecchheeehhhhcccccccccchhHHHHHHHHHhcCCCCChHHHHHHHHHh
Confidence            347999999999999999999 8776  99999999997776432221   22234444344333444 68899999999


Q ss_pred             CCcccceeeccCCChhhhhhccC------CCCch----hhcc--ccCCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEE
Q 026577           90 GLTDYRTFVGTNLNPLWEKFLVP------SEDDV----IQCQ--HTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFV  157 (236)
Q Consensus        90 g~T~Yr~fv~t~~~p~~~~~~~~------~~~~~----~~~~--~~~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~  157 (236)
                      |++     +||..+|.|..|-..      ..+..    .+.+  -.. ..+.+.++...||++++.||... +.+.|+|+
T Consensus       193 GA~-----ICt~~~P~C~~CPl~~~c~a~~~g~~~~~P~k~~k~~~~-~~~~~~~~~~~~~~~~l~kr~~~-gl~~gl~~  265 (342)
T COG1194         193 GAT-----ICTAKKPKCSLCPLRDNCAAYRNGTPEKYPVKKPKKKLP-RRFAAFLILNRDGEVLLEKRPEK-GLLGGLWC  265 (342)
T ss_pred             hhH-----hhcCCCCCCCcCcchHHHHHHHcCCcccCCCcCcccccc-hheeeEEEEccCcchhhhhCccc-Cceecccc
Confidence            999     999999988754211      11111    1111  112 34556677778999999999855 79999999


Q ss_pred             eccccCCC
Q 026577          158 FPGGHPEP  165 (236)
Q Consensus       158 fPGG~~Ep  165 (236)
                      ||....+.
T Consensus       266 fP~~e~~~  273 (342)
T COG1194         266 FPQFEDEA  273 (342)
T ss_pred             cccccccc
Confidence            99876544

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=98.93  E-value=1.1e-08  Score=84.52  Aligned_cols=65  Identities=26%  Similarity=0.416  Sum_probs=49.6

Q ss_pred             CCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577          124 ASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI  203 (236)
Q Consensus       124 ~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt  203 (236)
                      .++-.|.++..+ ++++||.++..      ..|++|||++|++|+                      +.+||.||+.|||
T Consensus        22 ~~~~~V~ii~~~-~~~~LL~~~~~------~~~elPgG~vE~gEt----------------------~~eaA~REl~EET   72 (156)
T TIGR02705        22 PNPNHVLVIPRY-KDQWLLTEHKR------RGLEFPGGKVEPGET----------------------SKEAAIREVMEET   72 (156)
T ss_pred             CCCCEEEEEEEE-CCEEEEEEEcC------CcEECCceecCCCCC----------------------HHHHHHHHHHHHh
Confidence            355566666665 55899888763      239999999999998                      9999999999999


Q ss_pred             CCCCCCCccceeEEeee
Q 026577          204 GVPSESLVSYSLLIRYQ  220 (236)
Q Consensus       204 Gl~~~~l~~~~ll~~~~  220 (236)
                      |+.+..+   ..++.+.
T Consensus        73 G~~~~~~---~~lg~~~   86 (156)
T TIGR02705        73 GAIVKEL---HYIGQYE   86 (156)
T ss_pred             CcEeeee---EEEEEEE
Confidence            9987644   4455443

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>PLN02791 Nudix hydrolase homolog

Probab=98.90  E-value=7.9e-09  Score=103.42  Aligned_cols=61  Identities=23%  Similarity=0.376  Sum_probs=54.6

Q ss_pred             ceEEEEEEEeC-CCeEEEEEEcCCCCCCCCeEEe-ccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577          126 PLGNGAVVETS-DKKILLLQRSNNVGEFPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI  203 (236)
Q Consensus       126 ~lgv~~vl~t~-dg~vLl~rRs~~~~~~~G~~~f-PGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt  203 (236)
                      ..++.++|++. +|++||.|||..+..+||+|++ ||||++++|+                      ..++|+||+.||+
T Consensus        32 HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs----------------------~~eAA~REL~EEL   89 (770)
T PLN02791         32 HRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDT----------------------SLLSAQRELEEEL   89 (770)
T ss_pred             eEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCC----------------------HHHHHHHHHHHHh
Confidence            34677888886 6999999999998999999998 7999999998                      8899999999999


Q ss_pred             CCCCC
Q 026577          204 GVPSE  208 (236)
Q Consensus       204 Gl~~~  208 (236)
                      ||.+.
T Consensus        90 GI~l~   94 (770)
T PLN02791         90 GIILP   94 (770)
T ss_pred             CCCCC
Confidence            99864

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=98.84  E-value=2.1e-08  Score=85.92  Aligned_cols=64  Identities=16%  Similarity=0.146  Sum_probs=50.1

Q ss_pred             CceEEEEEEEeC-CCeEEEEEEcCCCCC----CCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHH
Q 026577          125 SPLGNGAVVETS-DKKILLLQRSNNVGE----FPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREV  199 (236)
Q Consensus       125 ~~lgv~~vl~t~-dg~vLl~rRs~~~~~----~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl  199 (236)
                      ++-+|+++.++. +++|+|+|+.+....    .+-.|++|+|++|++|+                      +.+||+||+
T Consensus        48 ~~~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~----------------------p~~aA~REL  105 (202)
T PRK10729         48 RGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGES----------------------VEDVARREA  105 (202)
T ss_pred             cCCeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCC----------------------HHHHHHHHH
Confidence            333566666776 479999998755211    23579999999999998                      999999999


Q ss_pred             HHhhCCCCCCC
Q 026577          200 VEEIGVPSESL  210 (236)
Q Consensus       200 ~EEtGl~~~~l  210 (236)
                      .||||+....+
T Consensus       106 ~EETGy~a~~~  116 (202)
T PRK10729        106 IEEAGLIVGRT  116 (202)
T ss_pred             HHHhCceeeEE
Confidence            99999997654

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=98.84  E-value=5.7e-08  Score=82.64  Aligned_cols=60  Identities=15%  Similarity=0.151  Sum_probs=47.2

Q ss_pred             EEEEEEEeC-CCeEEEEEEcCCCCC------CCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHH
Q 026577          128 GNGAVVETS-DKKILLLQRSNNVGE------FPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVV  200 (236)
Q Consensus       128 gv~~vl~t~-dg~vLl~rRs~~~~~------~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~  200 (236)
                      +|++++.+. +++++|+|+.+.. .      .+=.|++|+|.+|++ .                      +.+||.||+.
T Consensus        47 ~v~Vl~~~~~~~~vvLvrQyR~~-v~~~~~~~~~~lElPAG~vd~~-~----------------------p~~aA~REL~  102 (191)
T PRK15009         47 GATILLYNAKKKTVVLIRQFRVA-TWVNGNESGQLIETCAGLLDND-E----------------------PEVCIRKEAI  102 (191)
T ss_pred             EEEEEEEECCCCEEEEEEccccc-ccccCCCCceEEEEeccccCCC-C----------------------HHHHHHHHHH
Confidence            566666665 6799999988553 3      445689999999964 4                      8899999999


Q ss_pred             HhhCCCCCCCc
Q 026577          201 EEIGVPSESLV  211 (236)
Q Consensus       201 EEtGl~~~~l~  211 (236)
                      ||||+....+.
T Consensus       103 EETGy~a~~~~  113 (191)
T PRK15009        103 EETGYEVGEVR  113 (191)
T ss_pred             HhhCCccceEE
Confidence            99999887653

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=98.82  E-value=1.8e-08  Score=88.88  Aligned_cols=78  Identities=21%  Similarity=0.239  Sum_probs=54.9

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEec-cccCCCCCCCCCCCCCCCCCch-hhhccchHhHHHHHHHHHHHhh
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSE-FINHKVSQEMFDSITREVVEEI  203 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fP-GG~~Ep~e~~~~~~~~~~~~~~-~~~~~~~~~l~~aa~REl~EEt  203 (236)
                      ..++.++|++++|++||.||+..+..+||+|+.. ||||..+++..      .+|.+ .+....+....+||+||+.|||
T Consensus        56 Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~------e~~~e~~~~~~~~~~~~eAA~REL~EEl  129 (247)
T PLN02552         56 HRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPN------EVDRESELIDGNVLGVKNAAQRKLLHEL  129 (247)
T ss_pred             EEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccc------cccccccccccchhhHHHHHHhHHHHHh
Confidence            3577889999999999999999888999999875 68888775410      00000 0000001115689999999999


Q ss_pred             CCCCCC
Q 026577          204 GVPSES  209 (236)
Q Consensus       204 Gl~~~~  209 (236)
                      ||....
T Consensus       130 GI~~~~  135 (247)
T PLN02552        130 GIPAED  135 (247)
T ss_pred             CCCccc
Confidence            999654

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=98.82  E-value=1e-08  Score=78.98  Aligned_cols=46  Identities=33%  Similarity=0.615  Sum_probs=39.8

Q ss_pred             CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHH-HHHHHHHHhhCCCCCC
Q 026577          138 KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFD-SITREVVEEIGVPSES  209 (236)
Q Consensus       138 g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~-aa~REl~EEtGl~~~~  209 (236)
                      +++++.+|....    |.|.||||++|++|.                      +.. ||+||+.||||+....
T Consensus        24 ~~vl~~~~~~~~----~~~~~PgG~ve~~e~----------------------~~~~aa~RE~~EEtGl~~~~   70 (161)
T COG0494          24 GEVLLAQRRDDG----GLWELPGGKVEPGEE----------------------LPEEAAARELEEETGLRVKD   70 (161)
T ss_pred             CEEeEEEccccC----CceecCCcccCCCCc----------------------hHHHHHHHHHHHHhCCeeee
Confidence            788888888552    799999999999998                      356 9999999999998874

>PLN03143 nudix hydrolase; Provisional

Probab=98.77  E-value=4.3e-08  Score=88.39  Aligned_cols=63  Identities=17%  Similarity=0.174  Sum_probs=47.0

Q ss_pred             cCCceEEEEEEE-eCCCe--EEEEEEcCCCCCCCCeEEeccccCCCC-CCCCCCCCCCCCCchhhhccchHhHHHHHHHH
Q 026577          123 TASPLGNGAVVE-TSDKK--ILLLQRSNNVGEFPGHFVFPGGHPEPQ-DAGITSHPCGSTDSEFINHKVSQEMFDSITRE  198 (236)
Q Consensus       123 ~~~~lgv~~vl~-t~dg~--vLl~rRs~~~~~~~G~~~fPGG~~Ep~-e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~RE  198 (236)
                      ..++-+|++++. +.+++  ++|+|+.+. ....-.|+||||.+|++ ++                      +.++|+||
T Consensus       125 ~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~-pvg~~~lE~PAG~lD~~~ed----------------------p~~aA~RE  181 (291)
T PLN03143        125 FARGPAVAVLILLESEGETYAVLTEQVRV-PVGKFVLELPAGMLDDDKGD----------------------FVGTAVRE  181 (291)
T ss_pred             EEcCCeEEEEEEEeCCCCEEEEEEEeEec-CCCcEEEEecccccCCCCCC----------------------HHHHHHHH
Confidence            344445555554 44555  899998853 34455899999999985 45                      89999999


Q ss_pred             HHHhhCCCCC
Q 026577          199 VVEEIGVPSE  208 (236)
Q Consensus       199 l~EEtGl~~~  208 (236)
                      +.||||+.+.
T Consensus       182 L~EETG~~~~  191 (291)
T PLN03143        182 VEEETGIKLK  191 (291)
T ss_pred             HHHHHCCccc
Confidence            9999999864

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.75  E-value=7.4e-08  Score=76.84  Aligned_cols=50  Identities=28%  Similarity=0.436  Sum_probs=38.3

Q ss_pred             EEEEEeCCC--eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          130 GAVVETSDK--KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       130 ~~vl~t~dg--~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      .+++...++  +|++.|.. .     +.|.+|||++|++|+                      +.+||+||+.||||+..
T Consensus         4 ~~~~~~~~~~~~ll~~r~~-~-----~~~~lPgG~ve~~E~----------------------~~~aa~Rel~EEtGl~~   55 (126)
T cd04663           4 PAVLRRNGEVLELLVFEHP-L-----AGFQIVKGTVEPGET----------------------PEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEeCCceEEEEEEEcC-C-----CcEECCCccCCCCCC----------------------HHHHHHHHHHHHHCCee
Confidence            444443443  55555443 2     459999999999998                      99999999999999987

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=98.71  E-value=1.5e-08  Score=90.30  Aligned_cols=84  Identities=24%  Similarity=0.396  Sum_probs=65.9

Q ss_pred             cCCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHh
Q 026577          123 TASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE  202 (236)
Q Consensus       123 ~~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE  202 (236)
                      +.+.--+.++++..+++++|.++.++   .+|++..-+|.+||+|+                      +++|+.||++||
T Consensus       140 fPR~dP~vIv~v~~~~~ilLa~~~~h---~~g~yS~LAGFVE~GET----------------------lE~AV~REv~EE  194 (279)
T COG2816         140 FPRIDPCVIVAVIRGDEILLARHPRH---FPGMYSLLAGFVEPGET----------------------LEQAVAREVFEE  194 (279)
T ss_pred             CCCCCCeEEEEEecCCceeecCCCCC---CCcceeeeeecccCCcc----------------------HHHHHHHHHHHh
Confidence            33333344455555667888888855   39999999999999999                      999999999999


Q ss_pred             hCCCCCCCccceeEEeeeeeecceeeeeEEEE
Q 026577          203 IGVPSESLVSYSLLIRYQVVVPALLLCGYMCT  234 (236)
Q Consensus       203 tGl~~~~l~~~~ll~~~~~~~~~~~~~~~~~~  234 (236)
                      +||.+..+   +..+...+.+|..++.|||..
T Consensus       195 ~Gi~V~~v---rY~~SQPWPfP~SLMigf~ae  223 (279)
T COG2816         195 VGIKVKNV---RYVGSQPWPFPHSLMLGFMAE  223 (279)
T ss_pred             hCeEEeee---eEEeccCCCCchhhhhhheee
Confidence            99999866   456666678999988888763

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=98.71  E-value=1.6e-08  Score=90.86  Aligned_cols=63  Identities=27%  Similarity=0.403  Sum_probs=52.2

Q ss_pred             CCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577          124 ASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI  203 (236)
Q Consensus       124 ~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt  203 (236)
                      -.|+-+ .+|++.||+..|..|...  ..+|+|..++|.+||+|+                      ++++++||++||+
T Consensus       186 ~dPvVI-m~li~~d~~~~LL~R~~r--~~~gl~t~lAGFlEpGES----------------------~eeav~REtwEEt  240 (345)
T KOG3084|consen  186 TDPVVI-MLLIDHDGKHALLGRQKR--YPPGLWTCLAGFLEPGES----------------------IEEAVRRETWEET  240 (345)
T ss_pred             CCCeEE-EEEEcCCCCEeeeecccC--CCCchhhhhhccCCcccc----------------------HHHHHHHHHHHHh
Confidence            345544 456678888777777543  778999999999999999                      9999999999999


Q ss_pred             CCCCCCCc
Q 026577          204 GVPSESLV  211 (236)
Q Consensus       204 Gl~~~~l~  211 (236)
                      ||+++.++
T Consensus       241 Gi~V~~I~  248 (345)
T KOG3084|consen  241 GIEVEVIS  248 (345)
T ss_pred             CceeeeEe
Confidence            99999764

>PRK13910 DNA glycosylase MutY; Provisional

Probab=98.70  E-value=7.9e-10  Score=99.57  Aligned_cols=135  Identities=10%  Similarity=0.103  Sum_probs=84.5

Q ss_pred             cCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhCCCcccCceEEEeeeEEecCCCCCCcceEEEecCCcc
Q 026577           14 SCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTD   93 (236)
Q Consensus        14 ~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~p~lfng~kfrl~~~~~~~~~~~~~~~~~~l~lg~T~   93 (236)
                      ...||||++|++++++.+|++ |.+.  +|.+|.|+..+...-.+.. +...++.....+.+.+.+.+.+++.|++|.+ 
T Consensus        75 ~~LpGIG~kTA~aIl~~af~~-~~~~--VD~nV~RVl~Rl~g~~~~~-~~~~l~~~~~~~l~~~~~~~~nqaLm~~Ga~-  149 (289)
T PRK13910         75 LKLPGIGAYTANAILCFGFRE-KSAC--VDANIKRVLLRLFGLDPNI-HAKDLQIKANDFLNLNESFNHNQALIDLGAL-  149 (289)
T ss_pred             HhCCCCCHHHHHHHHHHHCCC-CcCc--ccHHHHHHHHHHhcCCCCc-cHHHHHHHHHHhCCccchHHHHHHHHHHhHH-
Confidence            367999999999999999999 7654  9999999998653321110 1111221111222334456789999999999 


Q ss_pred             cceeeccCCChhhhhhc----cCCCCch----hhccccCC-ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccc
Q 026577           94 YRTFVGTNLNPLWEKFL----VPSEDDV----IQCQHTAS-PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGG  161 (236)
Q Consensus        94 Yr~fv~t~~~p~~~~~~----~~~~~~~----~~~~~~~~-~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG  161 (236)
                          +||+ +|.|..|.    |.+....    .+.+-... .....+++. .+|++++.||.  .+.+.|+|+||+.
T Consensus       150 ----iC~~-~P~C~~CPl~~~C~~~~~~~~~~~~~kk~~~~~~~~~~~~~-~~~~~ll~kr~--~~l~~gl~~fP~~  218 (289)
T PRK13910        150 ----ICSP-KPKCAICPLNPYCLGKNNPEKHTLKKKQEIVQEERYLGVVI-QNNQIALEKIE--QKLYLGMHHFPNL  218 (289)
T ss_pred             ----HcCC-CCCCCCCcChhhhhhhhcCCccccCCCCCCCceEEEEEEEE-ECCEEEEEECC--CchhcccccCCCC
Confidence                9998 79887552    2221111    11110111 122223444 57899998884  3699999999963

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=98.69  E-value=6.4e-10  Score=99.55  Aligned_cols=140  Identities=14%  Similarity=0.194  Sum_probs=88.8

Q ss_pred             ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhh--CCCc-ccCceEEEeeeEEecCCCCCCcceEEEec
Q 026577           13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQI--NKSL-FNGQKFRYGGHIMRGEGGSSVESHVCLHL   89 (236)
Q Consensus        13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~--~p~l-fng~kfrl~~~~~~~~~~~~~~~~~~l~l   89 (236)
                      +...||||++|++++++.+|++ |.|.  +|.+|.|+..+...-  .+.- -....++.....+.+.+.++++|++.|++
T Consensus       107 L~~LpGIG~~TA~~Il~~a~~~-~~~~--vD~~v~RVl~Rl~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~~~n~alm~l  183 (275)
T TIGR01084       107 LAALPGVGRYTAGAILSFALNK-PYPI--LDGNVKRVLSRLFAVEGWPGKKKVENRLWTLAESLLPKADPEAFNQALMDL  183 (275)
T ss_pred             HHhCCCCCHHHHHHHHHHHCCC-CCCc--chHhHHHHHHHHccCcCCCCHHHHHHHHHHHHHHHCChhhHHHHHHHHHHH
Confidence            3367999999999999999999 7665  999999998865321  1100 00001111112233334566789999999


Q ss_pred             CCcccceeeccCCChhhhhhc----cCC--CCch----hhc-cccCCceE-EEEEEEeCCCeEEEEEEcCCCCCCCCeEE
Q 026577           90 GLTDYRTFVGTNLNPLWEKFL----VPS--EDDV----IQC-QHTASPLG-NGAVVETSDKKILLLQRSNNVGEFPGHFV  157 (236)
Q Consensus        90 g~T~Yr~fv~t~~~p~~~~~~----~~~--~~~~----~~~-~~~~~~lg-v~~vl~t~dg~vLl~rRs~~~~~~~G~~~  157 (236)
                      |.+     +|+..+|.|..|.    |..  .+..    .+. .-...... ...++...+|++++.||... +.+.|+|+
T Consensus       184 G~~-----vC~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~gl~~  257 (275)
T TIGR01084       184 GAM-----ICTRKKPKCDLCPLQDFCLAYQQGTWEEYPVKKPKAAPPERTTYFLVLQNYDGEVLLEQRPEK-GLWGGLYC  257 (275)
T ss_pred             hHH-----HcCCCCCCCCCCCChhhCHHHHcCCHhhcCCCCCCCCCCeEEEEEEEEEeCCCeEEEEeCCCC-chhhcccc
Confidence            999     9999999987652    211  1110    110 01111223 33344456789999999854 69999999


Q ss_pred             eccc
Q 026577          158 FPGG  161 (236)
Q Consensus       158 fPGG  161 (236)
                      ||+.
T Consensus       258 ~p~~  261 (275)
T TIGR01084       258 FPQF  261 (275)
T ss_pred             CCCC
Confidence            9973

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=98.64  E-value=5.4e-08  Score=82.50  Aligned_cols=53  Identities=25%  Similarity=0.507  Sum_probs=42.2

Q ss_pred             EEEEEEEeCC---CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          128 GNGAVVETSD---KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       128 gv~~vl~t~d---g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      +.++++..++   -++|++||..     .|.|.+|||++|++|+                      +.+||+||+.||||
T Consensus        36 ~~~~i~~~~~~~~l~vLl~~r~~-----~g~walPGG~v~~~E~----------------------~~~aa~Rel~EEt~   88 (186)
T cd03670          36 GDGSIHPKSGKPILQFVAIKRPD-----SGEWAIPGGMVDPGEK----------------------ISATLKREFGEEAL   88 (186)
T ss_pred             CCEEEEecCCCCeeEEEEEEeCC-----CCcCcCCeeeccCCCC----------------------HHHHHHHHHHHHHc
Confidence            4344555442   3788888863     3899999999999998                      99999999999997


Q ss_pred             CCC
Q 026577          205 VPS  207 (236)
Q Consensus       205 l~~  207 (236)
                      +.+
T Consensus        89 l~l   91 (186)
T cd03670          89 NSL   91 (186)
T ss_pred             ccc
Confidence            654

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.57  E-value=1.4e-07  Score=81.86  Aligned_cols=64  Identities=28%  Similarity=0.445  Sum_probs=51.9

Q ss_pred             ceEEEEEEEeC-C--CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHh
Q 026577          126 PLGNGAVVETS-D--KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE  202 (236)
Q Consensus       126 ~lgv~~vl~t~-d--g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE  202 (236)
                      ..+|.+.+.+. +  .+||+.|||.....++|..+||||+.|+.|..                     -..+|+||..||
T Consensus        43 ~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s---------------------~~~tAlREt~EE  101 (246)
T KOG3069|consen   43 KAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKS---------------------DIQTALRETEEE  101 (246)
T ss_pred             CccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccc---------------------hHHHHHHHHHHH
Confidence            34555555433 2  47999999999999999999999999999872                     458999999999


Q ss_pred             hCCCCCCC
Q 026577          203 IGVPSESL  210 (236)
Q Consensus       203 tGl~~~~l  210 (236)
                      +|++.+.+
T Consensus       102 IGl~~~~~  109 (246)
T KOG3069|consen  102 IGLDPELV  109 (246)
T ss_pred             hCCCHHHh
Confidence            99998753

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.50  E-value=1.6e-06  Score=66.08  Aligned_cols=74  Identities=20%  Similarity=0.262  Sum_probs=50.0

Q ss_pred             EEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCCc
Q 026577          132 VVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLV  211 (236)
Q Consensus       132 vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l~  211 (236)
                      +++..+|++|+.||.. .+.++|+|+||+|..+.++.                      ..++..+|+.+|.++..    
T Consensus         8 ~ii~~~~~~ll~kR~~-~gl~~glwefP~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~----   60 (118)
T cd03431           8 VVIRNDGRVLLEKRPE-KGLLAGLWEFPSVEWEEEAD----------------------GEEALLSALKKALRLSL----   60 (118)
T ss_pred             EEEecCCeEEEEECCC-CCCCCcceeCCCccccCCcC----------------------HHHHHHHHHHHHhCccc----
Confidence            3344578999999975 47999999999998887765                      56777788888876411    


Q ss_pred             cceeEEeeeeeecc--eeeeeEEEE
Q 026577          212 SYSLLIRYQVVVPA--LLLCGYMCT  234 (236)
Q Consensus       212 ~~~ll~~~~~~~~~--~~~~~~~~~  234 (236)
                        ..++...+.+++  +.+.-|.|+
T Consensus        61 --~~~~~~~H~fth~~~~~~~~~~~   83 (118)
T cd03431          61 --EPLGTVKHTFTHFRLTLHVYLAR   83 (118)
T ss_pred             --ccceeEEEecCCeEEEEEEEEEE
Confidence              113344555554  344455554

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=98.33  E-value=1.3e-06  Score=70.63  Aligned_cols=57  Identities=32%  Similarity=0.492  Sum_probs=45.4

Q ss_pred             EEEEEEEeCCC---eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          128 GNGAVVETSDK---KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       128 gv~~vl~t~dg---~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      -++++....++   +|||+.-|++    +-.|.||+|+.||+|+                      ..++|+||+.||.|
T Consensus        11 vagCi~~r~~~~~ieVLlvsSs~~----~~~wi~PKGGwE~dE~----------------------~~eAA~REt~EEAG   64 (145)
T KOG2839|consen   11 VAGCICYRSDKEKIEVLLVSSSKK----PHRWIVPKGGWEPDES----------------------VEEAALRETWEEAG   64 (145)
T ss_pred             EEEeeeeeecCcceEEEEEecCCC----CCCccCCCCCCCCCCC----------------------HHHHHHHHHHHHhC
Confidence            44555555665   6888876643    5789999999999998                      88999999999999


Q ss_pred             CCCCCC
Q 026577          205 VPSESL  210 (236)
Q Consensus       205 l~~~~l  210 (236)
                      |.-...
T Consensus        65 v~G~l~   70 (145)
T KOG2839|consen   65 VKGKLG   70 (145)
T ss_pred             ceeeee
Confidence            987744

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.02  E-value=5.8e-06  Score=74.29  Aligned_cols=67  Identities=27%  Similarity=0.484  Sum_probs=56.7

Q ss_pred             cccCCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHH
Q 026577          121 QHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVV  200 (236)
Q Consensus       121 ~~~~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~  200 (236)
                      ++.++-+||++.+++..++|++++-.......+|.|-+|+|.++++|.                      +.+.++||++
T Consensus       110 ~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~----------------------i~~gavrEvk  167 (295)
T KOG0648|consen  110 ANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGED----------------------IWHGAVREVK  167 (295)
T ss_pred             CchhhheeeeeeEecCCceeEEEEecccceeecccccccceEeccccc----------------------chhhhhhhhH
Confidence            456788999999999888988887543444678999999999999998                      9999999999


Q ss_pred             HhhCCCCCC
Q 026577          201 EEIGVPSES  209 (236)
Q Consensus       201 EEtGl~~~~  209 (236)
                      ||||++...
T Consensus       168 eetgid~ef  176 (295)
T KOG0648|consen  168 EETGIDTEF  176 (295)
T ss_pred             HHhCcchhh
Confidence            999986553

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=97.93  E-value=2.3e-05  Score=65.38  Aligned_cols=62  Identities=19%  Similarity=0.343  Sum_probs=56.1

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEE-eccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~-fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      ++.+++|.+.+|++|+.||+..+..|||.|. --.|||-++++                      ..++++|-+.+|+||
T Consensus        34 rAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es----------------------~~~A~~rRl~~ELGi   91 (185)
T COG1443          34 RAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGES----------------------NEDAARRRLAYELGI   91 (185)
T ss_pred             hhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCc----------------------hHHHHHHHHHHHhCC
Confidence            3567899999999999999988899999996 67899999998                      889999999999999


Q ss_pred             CCCCC
Q 026577          206 PSESL  210 (236)
Q Consensus       206 ~~~~l  210 (236)
                      .....
T Consensus        92 e~~~~   96 (185)
T COG1443          92 EPDQY   96 (185)
T ss_pred             CCccc
Confidence            99853

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=97.92  E-value=3.7e-05  Score=65.37  Aligned_cols=60  Identities=22%  Similarity=0.224  Sum_probs=42.7

Q ss_pred             CceEEEEEEEeCCC--eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHh
Q 026577          125 SPLGNGAVVETSDK--KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE  202 (236)
Q Consensus       125 ~~lgv~~vl~t~dg--~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE  202 (236)
                      ..+++-+++. +||  .++|.++-+. ....-.+++|+|-+|.+|+                      +..+|+||++||
T Consensus        74 dgVaIl~il~-~dG~~~ivL~kQfRp-P~Gk~ciElPAGLiD~ge~----------------------~~~aAiREl~EE  129 (225)
T KOG3041|consen   74 DGVAILAILE-SDGKPYIVLVKQFRP-PTGKICIELPAGLIDDGED----------------------FEGAAIRELEEE  129 (225)
T ss_pred             CeEEEEEEEe-cCCcEEEEEEEeecC-CCCcEEEEcccccccCCCc----------------------hHHHHHHHHHHH
Confidence            3344444443 577  4777776633 2333355789999999998                      999999999999


Q ss_pred             hCCCCC
Q 026577          203 IGVPSE  208 (236)
Q Consensus       203 tGl~~~  208 (236)
                      ||+.-.
T Consensus       130 tGy~gk  135 (225)
T KOG3041|consen  130 TGYKGK  135 (225)
T ss_pred             hCccce
Confidence            999843

>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]

Probab=97.89  E-value=8.7e-07  Score=81.91  Aligned_cols=87  Identities=11%  Similarity=0.206  Sum_probs=69.1

Q ss_pred             ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhC----CCcccCceEEEeeeEEecCCCCCCcceEEEe
Q 026577           13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQIN----KSLFNGQKFRYGGHIMRGEGGSSVESHVCLH   88 (236)
Q Consensus        13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~----p~lfng~kfrl~~~~~~~~~~~~~~~~~~l~   88 (236)
                      +.-.||+|+||+++++|++||.+.   .-+++||.++..+.++-+    ..+|+.....+. .++.++-.|||+||+.|.
T Consensus       208 ~kgvpGVG~YTAGAiaSIAf~q~t---GiVDGNVirvlsRalAIhsDcSkgk~~q~~wkLA-~qLVDP~RPGDFNQalME  283 (555)
T KOG2457|consen  208 MKGVPGVGQYTAGAIASIAFNQVT---GIVDGNVIRVLSRALAIHSDCSKGKFFQSSWKLA-AQLVDPSRPGDFNQALME  283 (555)
T ss_pred             HhhCCCCCccchhhhhhhhhcCcc---cccccchHHHhHHhHhhcCCcchhhHHHHHHHHH-HHhcCCCCCCcHHHHHHH
Confidence            334699999999999999999933   248999999998777732    235666655554 355677889999999999


Q ss_pred             cCCcccceeeccCCChhhhh
Q 026577           89 LGLTDYRTFVGTNLNPLWEK  108 (236)
Q Consensus        89 lg~T~Yr~fv~t~~~p~~~~  108 (236)
                      ||+|     +||+..|.|..
T Consensus       284 LGAt-----~CTpq~P~CS~  298 (555)
T KOG2457|consen  284 LGAT-----LCTPQKPSCSS  298 (555)
T ss_pred             hcCe-----eccCCCCCcCC
Confidence            9999     99999998763

>PLN02839 nudix hydrolase

Probab=97.81  E-value=4.6e-05  Score=70.62  Aligned_cols=58  Identities=21%  Similarity=0.278  Sum_probs=49.3

Q ss_pred             EEEEEe-CCCeEEEEEEcCCCCCCCCeEE-eccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          130 GAVVET-SDKKILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       130 ~~vl~t-~dg~vLl~rRs~~~~~~~G~~~-fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      .+.+.. .++++.+.|||..+..+||+|+ +.||.+..+++                      ++++++||+.||.||+.
T Consensus       209 NGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGes----------------------p~etliREa~EEAgLp~  266 (372)
T PLN02839        209 NGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGIS----------------------CGENLVKECEEEAGISK  266 (372)
T ss_pred             EEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCC----------------------HHHHHHHHHHHHcCCCH
Confidence            444443 2357999999999999999997 68999999998                      99999999999999987


Q ss_pred             CC
Q 026577          208 ES  209 (236)
Q Consensus       208 ~~  209 (236)
                      ..
T Consensus       267 ~l  268 (372)
T PLN02839        267 AI  268 (372)
T ss_pred             HH
Confidence            63

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=97.54  E-value=0.00021  Score=54.94  Aligned_cols=78  Identities=19%  Similarity=0.276  Sum_probs=45.9

Q ss_pred             EEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       131 ~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      .++++.+|++||.||..+ +.++|+|+||.--.+..+.                       .+.+.+.+.+..|+.+...
T Consensus         2 ~~i~~~~~~~Ll~kRp~~-gll~GLwefP~~e~~~~~~-----------------------~~~l~~~~~~~~~~~~~~~   57 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRPEK-GLLAGLWEFPLIESDEEDD-----------------------EEELEEWLEEQLGLSIRSV   57 (114)
T ss_dssp             EEEEETTSEEEEEE--SS-STTTT-EE--EEE-SSS-C-----------------------HHHHHHHTCCSSS-EEEE-
T ss_pred             EEEEEeCCEEEEEECCCC-ChhhcCcccCEeCccCCCC-----------------------HHHHHHHHHHHcCCChhhh
Confidence            467789999999999954 7999999999966653222                       2334445556677765433


Q ss_pred             ccceeEEeeeeeecc--eeeeeEEEEe
Q 026577          211 VSYSLLIRYQVVVPA--LLLCGYMCTS  235 (236)
Q Consensus       211 ~~~~ll~~~~~~~~~--~~~~~~~~~~  235 (236)
                      .   .++...+.+++  +.+..|.|.+
T Consensus        58 ~---~~~~v~H~fSH~~~~~~~~~~~~   81 (114)
T PF14815_consen   58 E---PLGTVKHVFSHRRWTIHVYEVEV   81 (114)
T ss_dssp             S----SEEEEEE-SSEEEEEEEEEEEE
T ss_pred             e---ecCcEEEEccceEEEEEEEEEEe
Confidence            2   35667888887  5777777764

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=95.97  E-value=0.0076  Score=52.34  Aligned_cols=39  Identities=28%  Similarity=0.591  Sum_probs=33.2

Q ss_pred             eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          139 KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       139 ~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      +++.+||+..     |.|-+|||.+||+|-                      +-.+.+||..||.=
T Consensus       140 e~vavkr~d~-----~~WAiPGGmvdpGE~----------------------vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  140 EFVAVKRPDN-----GEWAIPGGMVDPGEK----------------------VSATLKREFGEEAM  178 (275)
T ss_pred             EEEEEecCCC-----CcccCCCCcCCchhh----------------------hhHHHHHHHHHHHH
Confidence            5777888855     899999999999998                      77889999998853

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=95.86  E-value=0.011  Score=47.33  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=31.0

Q ss_pred             CCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          153 PGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       153 ~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      -|.|.+|-|....+|.                      ...+|.||..||+||.+.
T Consensus        35 ~GAWSIPKGey~~gEd----------------------p~~AArREf~EE~Gi~vd   68 (161)
T COG4119          35 DGAWSIPKGEYTGGED----------------------PWLAARREFSEEIGICVD   68 (161)
T ss_pred             CCcccccccccCCCcC----------------------HHHHHHHHhhhhhceeec
Confidence            3789999999999988                      889999999999999875

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.54  E-value=0.025  Score=48.50  Aligned_cols=69  Identities=25%  Similarity=0.358  Sum_probs=53.3

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEE-eccccCC--CCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFV-FPGGHPE--PQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~-fPGG~~E--p~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      +.++++.+++|++||.+||..+-.+||.|. .-.+||=  ++|....   +            .-++..+|.|-+.-|+|
T Consensus        54 aFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~---d------------~lGVr~AAqRkL~~ELG  118 (225)
T KOG0142|consen   54 AFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEEN---D------------ALGVRRAAQRKLKAELG  118 (225)
T ss_pred             eeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccC---c------------hHHHHHHHHHHHHHhhC
Confidence            556799999999999999988889999996 4567765  4433110   0            12388999999999999


Q ss_pred             CCCCCCc
Q 026577          205 VPSESLV  211 (236)
Q Consensus       205 l~~~~l~  211 (236)
                      |+.+.+.
T Consensus       119 Ip~e~v~  125 (225)
T KOG0142|consen  119 IPLEEVP  125 (225)
T ss_pred             CCccccC
Confidence            9999876

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=93.92  E-value=0.057  Score=47.76  Aligned_cols=48  Identities=25%  Similarity=0.374  Sum_probs=43.1

Q ss_pred             eEEEEEEcCCCCCCCCeEE-eccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          139 KILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       139 ~vLl~rRs~~~~~~~G~~~-fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      .+.+-|||+.+..|||+|+ ..||.+--+..                      +.++++.|..||.+++..
T Consensus       149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~g----------------------I~eT~iKE~~EEAnl~~~  197 (306)
T KOG4313|consen  149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFG----------------------IKETAIKEAAEEANLPSD  197 (306)
T ss_pred             EEEecccCCccccCcchhhhhhccccccCch----------------------HHHHHHHHHHHhcCCchh
Confidence            6888899999999999997 67888888777                      999999999999999884

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=91.78  E-value=0.64  Score=38.82  Aligned_cols=80  Identities=24%  Similarity=0.356  Sum_probs=52.4

Q ss_pred             ccCCceEEEEEEEeCCCeEEEEEEcCCCCCC--CCeEEe-ccccCCCCCCCCCCCCCCCCCchhhhccchHh-HHHHHHH
Q 026577          122 HTASPLGNGAVVETSDKKILLLQRSNNVGEF--PGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQE-MFDSITR  197 (236)
Q Consensus       122 ~~~~~lgv~~vl~t~dg~vLl~rRs~~~~~~--~G~~~f-PGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~-l~~aa~R  197 (236)
                      ...+++.- ++|.+.| +||+-+|-...++.  -|++.+ -|||+...+...                ...+ +.-.+-|
T Consensus        58 ~~KQ~IpY-vvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~----------------s~~evLk~n~~R  119 (203)
T COG4112          58 TTKQVIPY-VVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGAT----------------SREEVLKGNLER  119 (203)
T ss_pred             cccccccE-EEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcc----------------cHHHHHccchHH
Confidence            34565555 4556555 89999988554433  366665 699999877521                1112 3345889


Q ss_pred             HHHHhhCCCCCCCccceeEEee
Q 026577          198 EVVEEIGVPSESLVSYSLLIRY  219 (236)
Q Consensus       198 El~EEtGl~~~~l~~~~ll~~~  219 (236)
                      |+.||+++...++....++++-
T Consensus       120 EleEEv~vseqd~q~~e~lGlI  141 (203)
T COG4112         120 ELEEEVDVSEQDLQELEFLGLI  141 (203)
T ss_pred             HHHHHhCcCHHHhhhheeeeee
Confidence            9999999997776666666653

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=90.71  E-value=1.5  Score=37.44  Aligned_cols=56  Identities=23%  Similarity=0.398  Sum_probs=36.5

Q ss_pred             eEEEEEEEeC-CC--eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577          127 LGNGAVVETS-DK--KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI  203 (236)
Q Consensus       127 lgv~~vl~t~-dg--~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt  203 (236)
                      ..|.+|++.. .+  +|||+|...+      .|.+|||.+.++|.                      -.+..+|.+.+-+
T Consensus        44 rsVe~Vllvh~h~~PHvLLLq~~~~------~fkLPGg~l~~gE~----------------------e~~gLkrkL~~~l   95 (188)
T PF13869_consen   44 RSVEGVLLVHEHGHPHVLLLQIGNT------FFKLPGGRLRPGED----------------------EIEGLKRKLTEKL   95 (188)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEETTT------EEE-SEEE--TT------------------------HHHHHHHHHHHHH
T ss_pred             eEEEEEEEEecCCCcEEEEEeccCc------cccCCccEeCCCCC----------------------hhHHHHHHHHHHc
Confidence            3555555543 33  6899986532      69999999999998                      6889999999999


Q ss_pred             CCCCCCC
Q 026577          204 GVPSESL  210 (236)
Q Consensus       204 Gl~~~~l  210 (236)
                      |..-...
T Consensus        96 ~~~~~~~  102 (188)
T PF13869_consen   96 SPEDGVD  102 (188)
T ss_dssp             B-SSSS-
T ss_pred             CCCcCCC
Confidence            9876443

...

>PF14443 DBC1: DBC1

Probab=85.67  E-value=1.6  Score=34.83  Aligned_cols=56  Identities=18%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCCccc
Q 026577          139 KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLVSY  213 (236)
Q Consensus       139 ~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l~~~  213 (236)
                      ++|+++|.+.       ....||.-+|.=++.+    ...|.        .-+..+|+|=+++-|||+++.+..+
T Consensus         9 kFlv~~k~ke-------~~aiGG~WspsLDG~D----P~~dp--------~~LI~TAiR~~K~~tgiDLS~Ct~W   64 (126)
T PF14443_consen    9 KFLVGKKDKE-------IMAIGGPWSPSLDGGD----PSSDP--------SVLIRTAIRTCKALTGIDLSNCTQW   64 (126)
T ss_pred             eeEEeecCce-------EEecCCcCCcccCCCC----CCCCc--------HHHHHHHHHHHHHHhccchhhcCcc
Confidence            5677776642       3446676666632221    11111        1289999999999999999988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	2e-06
3grn_A	153	MUTT related protein; structural genomics, hydrola	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	1e-04
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	2e-04
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	5e-04

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 23/76 (30%)

Query: 130 GAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQ 189
             +++ +D   LL + ++N G FPG +   GG  EP          G    E        
Sbjct: 32  CPLIQ-NDGCYLLCKMADNRGVFPGQWALSGGGVEP----------GERIEE-------- 72

Query: 190 EMFDSITREVVEEIGV 205
               ++ RE+ EE+G 
Sbjct: 73  ----ALRREIREELGE 84

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 22/76 (28%)

Query: 130 GAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQ 189
            A++     + LLL+RS N     G +  PGG   P            +  E        
Sbjct: 12  YALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNP----------DESLKE-------- 53

Query: 190 EMFDSITREVVEEIGV 205
                + REV EE G+
Sbjct: 54  ----GVAREVWEETGI 65

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 36/282 (12%), Positives = 80/282 (28%), Gaps = 97/282 (34%)

Query: 3   QEADSAYKLLLSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSIS--------------- 47
              ++  ++L    +   P+  S    +    +    ++++  +                
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRS--DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 48  -EIWDSRVQINKSLFNGQ-KF----RYGGHIMRGEGGSSVESHVCL---HLGLTDYRT-- 96
             + +++   N   FN   K     R+   +      +   +H+ L    + LT      
Sbjct: 251 LNVQNAKA-WNA--FNLSCKILLTTRFKQ-VTDFLSAA-TTTHISLDHHSMTLTPDEVKS 305

Query: 97  ----FVGTNLNPLWEKFLVPSEDDVIQCQHTASPLGNGAVVE---------------TSD 137
               ++      L      P E          +P     + E                 D
Sbjct: 306 LLLKYLDCRPQDL------PREV----LTT--NPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 138 KKILLLQRSNNV---GEFPGHF----VFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQE 190
           K   +++ S NV    E+   F    VFP        A I +              +   
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFP------PSAHIPT-------------ILLSL 394

Query: 191 MFDSITREVVEEIGVPSESLVSYSLLIR----YQVVVPALLL 228
           ++  + +  V  +      L  YSL+ +      + +P++ L
Sbjct: 395 IWFDVIKSDVMVV---VNKLHKYSLVEKQPKESTISIPSIYL 433

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 36/156 (23%)

Query: 8   AYKLLLS-CPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWD--SRVQINKSLFNGQ 64
            Y +  +       P  +   F   Y  + H   N+E+   E       V ++   F  Q
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYF---YSHIGHHLKNIEHP--ERMTLFRMVFLDFR-FLEQ 505

Query: 65  KFRYGGHIMRGEGGSSVESHVCLHLGLTD---YRTFVGTNLNPLWE-------KFLVPSE 114
           K R+        G         L+  L     Y+ ++  N +P +E        FL   E
Sbjct: 506 KIRHDSTAWNASGSI-------LNT-LQQLKFYKPYICDN-DPKYERLVNAILDFLPKIE 556

Query: 115 DDVIQCQHT-----ASPLGNGAVVETSDKKILLLQR 145
           +++I  ++T     A    + A+ E + K++   QR
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEEAHKQV---QR 589

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 26/81 (32%)

Query: 131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQE 190
           A+   +D ++LL  RS+ +    G   FPGG  +  +                       
Sbjct: 41  ALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGET---------------------- 78

Query: 191 MFDSIT--REVVEEIGVPSES 209
              +    RE  EE+ +   +
Sbjct: 79  --PTQAALREAQEEVALDPAA 97

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 24/76 (31%)

Query: 130 GAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQ 189
             +VE S  + LL +R+N      G++  PGG  +             T           
Sbjct: 22  DFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQ----------KDET----------- 58

Query: 190 EMFDSITREVVEEIGV 205
            +  +  R  + E+G+
Sbjct: 59  -LEAAFERLTMAELGL 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.69
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.55
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.52
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.5
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.47
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.46
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.45
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.45
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.45
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.45
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.45
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.44
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.44
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.43
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.42
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.42
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.42
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.41
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.41
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.41
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.41
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.4
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.4
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.4
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.39
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.39
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.39
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.37
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.36
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.36
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.36
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.35
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.35
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.34
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.34
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.34
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.34
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.33
3f13_A	163	Putative nudix hydrolase family member; structural	99.32
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.31
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.31
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.3
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.3
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.3
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.3
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.3
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.29
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.29
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.27
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.27
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.27
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.26
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.26
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.25
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.24
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.24
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.23
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.22
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.2
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.19
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.17
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.17
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.17
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.16
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.14
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.13
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.12
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.1
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.09
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.09
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.02
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	98.98
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	98.94
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.71
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	98.7
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.33
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	98.25
1kea_A	221	Possible G-T mismatches repair enzyme; DNA repair,	91.42
3n5n_X	287	A/G-specific adenine DNA glycosylase; alpha-helice	89.73
1kg2_A	225	A/G-specific adenine glycosylase; DNA repair, hydr	85.18
2abk_A	211	Endonuclease III; DNA-repair, DNA glycosylase; 1.8	84.88
4e9f_A	161	Methyl-CPG-binding domain protein 4; HHH DNA glyco	83.17
1orn_A	226	Endonuclease III; DNA repair, DNA glycosylase, [4F	80.34

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.69  E-value=7.7e-19  Score=160.98  Aligned_cols=187  Identities=14%  Similarity=0.179  Sum_probs=125.5

Q ss_pred             cCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhCCCc-cc--CceEEEeeeEEecCCCCCCcceEEEecC
Q 026577           14 SCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSL-FN--GQKFRYGGHIMRGEGGSSVESHVCLHLG   90 (236)
Q Consensus        14 ~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~p~l-fn--g~kfrl~~~~~~~~~~~~~~~~~~l~lg   90 (236)
                      ...||||++|++++++.+|++ |.+.  ++.+|.|+..+.-.-.... +.  ...+.-....+.+.+..++.+++.|.+|
T Consensus       121 ~~l~GIG~~tA~~il~~~~~~-~~~~--vD~~v~Rv~~rl~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G  197 (369)
T 3fsp_A          121 SRLKGVGPYTVGAVLSLAYGV-PEPA--VDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAYENPGAFNEALIELG  197 (369)
T ss_dssp             HTSTTCCHHHHHHHHHHHHCC-CCCC--CCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHH
T ss_pred             hcCCCcCHHHHHHHHHHHCCC-Cccc--ccHHHHHHHHHHcCcccCccccchHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            367999999999999999999 7554  8999999977553211100 10  0112211122223344566788999999


Q ss_pred             CcccceeeccCCChhhhhhc----cCCC--Cc----hhhcc--ccCCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEe
Q 026577           91 LTDYRTFVGTNLNPLWEKFL----VPSE--DD----VIQCQ--HTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVF  158 (236)
Q Consensus        91 ~T~Yr~fv~t~~~p~~~~~~----~~~~--~~----~~~~~--~~~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~f  158 (236)
                      .+     +|+..+|.|..|.    |...  +.    +.+.+  .......+++++.+.+|+|||.||..+ +.++|+|+|
T Consensus       198 ~~-----~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~PvK~~kk~~~~~~~~~~vi~~~~g~vLL~rR~~~-g~~~GlWef  271 (369)
T 3fsp_A          198 AL-----VCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLAVAVLADDEGRVLIRKRDST-GLLANLWEF  271 (369)
T ss_dssp             HH-----TSCSSSCCTTTCTTGGGCHHHHHTCGGGCSCCCCCCCCEEEEEEEEEEECSSSEEEEEECCSS-STTTTCEEC
T ss_pred             HH-----hcCCCCCCCCCCCChhhhHHHhcCCcccCCccccccCcceEEEEEEEEEeCCCEEEEEECCCC-CCcCCcccC
Confidence            99     9999999987652    2111  00    01111  111223455666668899999999854 689999999


Q ss_pred             ccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCCccceeEEeeeeeecc--eeeeeEEEEe
Q 026577          159 PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLVSYSLLIRYQVVVPA--LLLCGYMCTS  235 (236)
Q Consensus       159 PGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l~~~~ll~~~~~~~~~--~~~~~~~~~~  235 (236)
                      |||++|++ +                      +.+++.||+.||||+.+....   +++.+.+.+++  +.+..|.|..
T Consensus       272 PGG~ve~g-t----------------------~~~al~REl~EE~Gl~v~~~~---~l~~~~h~~~h~~~~~~~~~~~~  324 (369)
T 3fsp_A          272 PSCETDGA-D----------------------GKEKLEQMVGEQYGLQVELTE---PIVSFEHAFSHLVWQLTVFPGRL  324 (369)
T ss_dssp             CEEECSSS-C----------------------THHHHHHHHTTSSSCCEEECC---CCCEEEEECSSEEEEEEEEEEEE
T ss_pred             CCcccCCC-C----------------------cHHHHHHHHHHHhCCceeeec---ccccEEEEcceEEEEEEEEEEEE
Confidence            99999999 7                      789999999999999887543   34445555554  4566666653

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.55  E-value=4.6e-14  Score=112.15  Aligned_cols=84  Identities=21%  Similarity=0.340  Sum_probs=66.5

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      .++|++++.+.+|++||+||+...+.++|+|.||||++|++|+                      +.+||+||+.||||+
T Consensus         8 ~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~----------------------~~~aa~REl~EE~Gl   65 (153)
T 3grn_A            8 IISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDES----------------------LKEGVAREVWEETGI   65 (153)
T ss_dssp             EEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCC----------------------HHHHHHHHHHHHHCC
T ss_pred             EEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCC----------------------HHHHHHhhhhhhhCc
Confidence            4577788888889999999997656899999999999999998                      999999999999999


Q ss_pred             CCCCCccceeEEeeeeeecc--eeeeeEEEE
Q 026577          206 PSESLVSYSLLIRYQVVVPA--LLLCGYMCT  234 (236)
Q Consensus       206 ~~~~l~~~~ll~~~~~~~~~--~~~~~~~~~  234 (236)
                      .+....   +++.+...++.  .....|.|.
T Consensus        66 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   93 (153)
T 3grn_A           66 TMVPGD---IAGQVNFELTEKKVIAIVFDGG   93 (153)
T ss_dssp             CCCCCS---EEEEEEEECSSCEEEEEEEEEE
T ss_pred             Eeecce---EEEEEEEecCCceEEEEEEEEE
Confidence            987543   45555555554  344455544

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.52  E-value=1.2e-13  Score=109.81  Aligned_cols=84  Identities=19%  Similarity=0.299  Sum_probs=64.7

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++|++++++.+|++||+||+..  .++|+|.||||++|++|+                      +.+||+||+.||||+.
T Consensus        19 ~~v~~vi~~~~~~vLl~~r~~~--~~~g~w~~PgG~ve~gE~----------------------~~~aa~REl~EEtGl~   74 (160)
T 1rya_A           19 VSLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDET----------------------LEAAFERLTMAELGLR   74 (160)
T ss_dssp             EEEEEEEECTTSCEEEEEECSS--SSTTSEECCEEECCTTCC----------------------HHHHHHHHHHHHHSSC
T ss_pred             EEEEEEEEcCCCEEEEEeccCC--CCCCEEECCccccCCCCC----------------------HHHHHHHHHHHHHCCC
Confidence            5778888877899999999864  468999999999999998                      9999999999999998


Q ss_pred             CCCCccceeEEeeeeeec----------ceeeeeEEEEe
Q 026577          207 SESLVSYSLLIRYQVVVP----------ALLLCGYMCTS  235 (236)
Q Consensus       207 ~~~l~~~~ll~~~~~~~~----------~~~~~~~~~~~  235 (236)
                      +.. ....+++.+...++          ......|.|..
T Consensus        75 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  112 (160)
T 1rya_A           75 LPI-TAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRV  112 (160)
T ss_dssp             CCG-GGSEEEEEEEEEESSBTTBSSSCEEEEEEEEEEEC
T ss_pred             CCc-ccceEEEEEeEEEcccccCCCcCcEEEEEEEEEEc
Confidence            641 23345666555444          34555666653

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.50  E-value=1.1e-13  Score=108.85  Aligned_cols=83  Identities=28%  Similarity=0.340  Sum_probs=65.6

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      ++.++++++..||++||+||... +.++|+|.||||++|++|+                      +.+||+||+.||||+
T Consensus        21 ~~~~~~~i~~~~~~vLl~~r~~~-~~~~g~w~~PgG~ve~gE~----------------------~~~aa~RE~~EE~Gl   77 (153)
T 3ees_A           21 WIPVVAGFLRKDGKILVGQRPEN-NSLAGQWEFPGGKIENGET----------------------PEEALARELNEELGI   77 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEECCTT-STTTTCEECSEEECCTTCC----------------------HHHHHHHHHHHHHSC
T ss_pred             eEEEEEEEEEECCEEEEEEeCCC-CCCCCeEECCceeeCCCCC----------------------HHHHHHHHHHHHHCC
Confidence            66777777888999999999865 5789999999999999998                      999999999999999


Q ss_pred             CCCCCccceeEEeeeeeecc--eeeeeEEEE
Q 026577          206 PSESLVSYSLLIRYQVVVPA--LLLCGYMCT  234 (236)
Q Consensus       206 ~~~~l~~~~ll~~~~~~~~~--~~~~~~~~~  234 (236)
                      .+....   ++..+.+.++.  ..+..|.|.
T Consensus        78 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  105 (153)
T 3ees_A           78 EAEVGE---LKLACTHSYGDVGILILFYEIL  105 (153)
T ss_dssp             EEECCC---EEEEEEEEETTEEEEEEEEEEC
T ss_pred             ccccCc---eEEEEEEecCCCeEEEEEEEEE
Confidence            877543   45555555554  344555554

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.47  E-value=2.4e-13  Score=107.93  Aligned_cols=85  Identities=25%  Similarity=0.319  Sum_probs=64.3

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCC--CCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577          126 PLGNGAVVETSDKKILLLQRSNN--VGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI  203 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~--~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt  203 (236)
                      ..++++++++.+|++||+||+..  .+.++|.|.||||++|++|+                      +.++|+||+.|||
T Consensus        13 ~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~----------------------~~~aa~RE~~EEt   70 (159)
T 1sjy_A           13 LRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGEN----------------------PQDAAVREACEET   70 (159)
T ss_dssp             EEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSC----------------------HHHHHHHHHHHHH
T ss_pred             EEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCC----------------------HHHHHHHHHHHHH
Confidence            34677777878899999999852  34678999999999999998                      9999999999999


Q ss_pred             CCCCCCCccceeEEeeeeeecc---eeeeeEEEEe
Q 026577          204 GVPSESLVSYSLLIRYQVVVPA---LLLCGYMCTS  235 (236)
Q Consensus       204 Gl~~~~l~~~~ll~~~~~~~~~---~~~~~~~~~~  235 (236)
                      |+.+..+   .+++.+...++.   .....|.|..
T Consensus        71 Gl~~~~~---~~l~~~~~~~~~~~~~~~~~f~~~~  102 (159)
T 1sjy_A           71 GLRVRPV---KFLGAYLGRFPDGVLILRHVWLAEP  102 (159)
T ss_dssp             SCCEEEE---EEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             Cccceee---EEEEEEecccCCCceEEEEEEEEEc
Confidence            9997643   345555544443   3555666653

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.46  E-value=2.7e-13  Score=106.15  Aligned_cols=81  Identities=23%  Similarity=0.407  Sum_probs=56.1

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCC--CCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGE--FPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~--~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      .+++++. .+|++||+||+.. ..  ++|+|.||||++|++|+                      +.+||+||+.||||+
T Consensus         8 ~v~~vi~-~~~~vLL~~r~~~-~~~~~~g~w~lPgG~ve~gE~----------------------~~~aa~REl~EE~Gl   63 (140)
T 3gwy_A            8 VVAAVIR-LGEKYLCVQRGQT-KFSYTSFRYEFPGGKVEEGES----------------------LQEALQREIMEEMDY   63 (140)
T ss_dssp             EEEEEEE-ETTEEEEEEC----------CCEECSEEECCTTCC----------------------HHHHHHHHHHHHHCC
T ss_pred             EEEEEEE-eCCEEEEEEecCC-CCCCCCCeEECCCccCCCCCC----------------------HHHHHHHHHHHhhCc
Confidence            3444555 4899999999865 34  89999999999999998                      999999999999999


Q ss_pred             CCCCCccceeEEeeeeeecc--eeeeeEEEEe
Q 026577          206 PSESLVSYSLLIRYQVVVPA--LLLCGYMCTS  235 (236)
Q Consensus       206 ~~~~l~~~~ll~~~~~~~~~--~~~~~~~~~~  235 (236)
                      .+...   .++..+...++.  .....|.|..
T Consensus        64 ~~~~~---~~~~~~~~~~~~~~~~~~~f~~~~   92 (140)
T 3gwy_A           64 VIEVG---EKLLTVHHTYPDFEITMHAFLCHP   92 (140)
T ss_dssp             CEEEE---EEEEEEECCCSSCCEEEEEEEEEE
T ss_pred             EEEec---eEEEEEEEEeCCceEEEEEEEEEe
Confidence            87644   345554444443  4555666653

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.45  E-value=2.8e-13  Score=103.52  Aligned_cols=78  Identities=37%  Similarity=0.576  Sum_probs=59.8

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      ++++++++++.+|++||+||+.      |.|.||||++|++|+                      +.++|+||+.||||+
T Consensus         2 ~~~~~~vi~~~~~~vLl~~r~~------g~w~~PgG~ve~gE~----------------------~~~aa~RE~~EE~Gl   53 (126)
T 1vcd_A            2 ELGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGES----------------------LEEAAVREVWEETGV   53 (126)
T ss_dssp             EEEEEEEEECTTSCEEEEECTT------SCEECCEECCCTTCC----------------------HHHHHHHHHHHHHCC
T ss_pred             eeEEEEEEEcCCCEEEEEEECC------CCccCCcCcCCCCCC----------------------HHHHHHHHHHHhhCc
Confidence            5688889998899999999873      889999999999998                      999999999999999


Q ss_pred             CCCCCccceeEEeeeeeecc--eeeeeEEEE
Q 026577          206 PSESLVSYSLLIRYQVVVPA--LLLCGYMCT  234 (236)
Q Consensus       206 ~~~~l~~~~ll~~~~~~~~~--~~~~~~~~~  234 (236)
                      .+...   .+++.+....+.  .....|.|.
T Consensus        54 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
T 1vcd_A           54 RAEVL---LPLYPTRYVNPKGVEREVHWFLM   81 (126)
T ss_dssp             EEEEE---EEEEEEEEECTTSCEEEEEEEEE
T ss_pred             Eeeec---cEEeEEEEecCCceEEEEEEEEE
Confidence            87643   334444333332  334455553

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.45  E-value=4.9e-13  Score=104.45  Aligned_cols=83  Identities=29%  Similarity=0.453  Sum_probs=62.1

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      .+++++++.+|++||+||... +.++|+|.||||++|++|+                      +.+||+||+.||||+.+
T Consensus        10 ~~~~vi~~~~~~vLl~~r~~~-~~~~g~w~lPgG~ve~gE~----------------------~~~aa~RE~~EE~Gl~~   66 (144)
T 3r03_A           10 VTAAALIDPDGRVLLAQRPPG-KSLAGLWEFPGGKLEPGET----------------------PEAALVRELAEELGVDT   66 (144)
T ss_dssp             EEEEEEBCTTSCEEEEECCTT-SSSTTCEECSEEECCTTCC----------------------HHHHHHHHHHHHHCCBC
T ss_pred             EEEEEEEcCCCEEEEEEeCCC-CCCCCcEECCCcEecCCCC----------------------HHHHHHHHHHHHhCcee
Confidence            455677777899999999855 4789999999999999998                      99999999999999998


Q ss_pred             CCCccceeEEeeeeeecc--eeeeeEEEE
Q 026577          208 ESLVSYSLLIRYQVVVPA--LLLCGYMCT  234 (236)
Q Consensus       208 ~~l~~~~ll~~~~~~~~~--~~~~~~~~~  234 (236)
                      .... ...+......++.  .....|.|.
T Consensus        67 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   94 (144)
T 3r03_A           67 RASC-LAPLAFASHSYDTFHLLMPLYACR   94 (144)
T ss_dssp             CGGG-CEEEEEEEEECSSSEEEEEEEEEC
T ss_pred             eccc-eEEEEeeeccCCCeEEEEEEEEEE
Confidence            7543 1223223333333  455566654

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.45  E-value=8.9e-13  Score=107.34  Aligned_cols=62  Identities=26%  Similarity=0.407  Sum_probs=54.7

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEe-ccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~f-PGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      .++++++++.+|++||.+|+.....++|+|.| |||++|++|+                      +.+||+||+.||||+
T Consensus        38 ~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~----------------------~~~aa~REl~EEtGl   95 (180)
T 2fkb_A           38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQ----------------------LLESARREAEEELGI   95 (180)
T ss_dssp             EEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCC----------------------HHHHHHHHHHHHHCC
T ss_pred             eEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCC----------------------HHHHHHHHHHHHHCC
Confidence            46777788888999999998766667999999 9999999998                      999999999999999


Q ss_pred             CCCCC
Q 026577          206 PSESL  210 (236)
Q Consensus       206 ~~~~l  210 (236)
                      ....+
T Consensus        96 ~~~~~  100 (180)
T 2fkb_A           96 AGVPF  100 (180)
T ss_dssp             BSCCC
T ss_pred             Cccce
Confidence            87654

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.45  E-value=3e-13  Score=111.66  Aligned_cols=62  Identities=21%  Similarity=0.324  Sum_probs=55.5

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEe-ccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~f-PGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      .+|++++++.+|++||.||+.....++|+|.| |||++|++|+                      +.+||+||+.||||+
T Consensus        33 ~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt----------------------~~~aa~REl~EEtGl   90 (190)
T 1hzt_A           33 LAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGES----------------------NEDAVIRRCRYELGV   90 (190)
T ss_dssp             ECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCC----------------------HHHHHHHHHHHHHCC
T ss_pred             EEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCC----------------------HHHHHHHHHHHHHCC
Confidence            36777888888999999998766678999999 9999999999                      999999999999999


Q ss_pred             CCCCC
Q 026577          206 PSESL  210 (236)
Q Consensus       206 ~~~~l  210 (236)
                      .+..+
T Consensus        91 ~~~~~   95 (190)
T 1hzt_A           91 EITPP   95 (190)
T ss_dssp             CBSCC
T ss_pred             Cchhh
Confidence            98765

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.45  E-value=1.8e-13  Score=107.67  Aligned_cols=56  Identities=34%  Similarity=0.545  Sum_probs=47.6

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      .+++++++. .||+|||+||.      .|.|.||||++|++|+                      +.+||+||+.||||+
T Consensus         4 ~~aag~vv~-~~~~vLL~~r~------~g~W~~PgG~ve~gEt----------------------~~~aa~RE~~EEtGl   54 (134)
T 3i7u_A            4 EFSAGGVLF-KDGEVLLIKTP------SNVWSFPKGNIEPGEK----------------------PEETAVREVWEETGV   54 (134)
T ss_dssp             EEEEEEEEE-ETTEEEEEECT------TSCEECCEEECCTTCC----------------------HHHHHHHHHHHHHSE
T ss_pred             EEEEEEEEE-ECCEEEEEEeC------CCcEECCeeEecCCCC----------------------HHHHHHHHHHHhcCc
Confidence            346666666 57999999975      2789999999999999                      999999999999999


Q ss_pred             CCCCC
Q 026577          206 PSESL  210 (236)
Q Consensus       206 ~~~~l  210 (236)
                      .+..+
T Consensus        55 ~~~~~   59 (134)
T 3i7u_A           55 KGEIL   59 (134)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            87643

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.44  E-value=6.7e-13  Score=106.37  Aligned_cols=82  Identities=26%  Similarity=0.427  Sum_probs=63.1

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ..++|++++.+ ||+|||+||+..  .++|.|.||||++|++|+                      +.+||+||+.||||
T Consensus        28 ~~~~v~~vi~~-~~~vLL~~r~~~--~~~~~w~lPgG~ve~gEs----------------------~~~aa~REl~EEtG   82 (157)
T 4dyw_A           28 PRVGCGAAIVR-DGRILLIKRKRA--PEAGCWGLPGGKVDWLEP----------------------VERAVCREIEEELG   82 (157)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEECSS--SSTTCEECCEEECCTTCC----------------------HHHHHHHHHHHHHS
T ss_pred             ceeEEEEEEEE-CCEEEEEEecCC--CCCCEEECCcccCCCCCC----------------------HHHHHHHHHHHHHC
Confidence            44677777776 899999999954  378999999999999998                      99999999999999


Q ss_pred             CCCCCCccceeEEeeeeeec----ceeeeeEEEE
Q 026577          205 VPSESLVSYSLLIRYQVVVP----ALLLCGYMCT  234 (236)
Q Consensus       205 l~~~~l~~~~ll~~~~~~~~----~~~~~~~~~~  234 (236)
                      |.+...   .++..+...++    ......|.|.
T Consensus        83 l~~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~  113 (157)
T 4dyw_A           83 IALERA---TLLCVVDHIDAANGEHWVAPVYLAH  113 (157)
T ss_dssp             CEEESC---EEEEEEEEEETTTTEEEEEEEEEES
T ss_pred             cccccC---cEEEEEEeeccCCCcEEEEEEEEEE
Confidence            988754   34555555542    2344455553

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.44  E-value=1.9e-13  Score=109.86  Aligned_cols=63  Identities=27%  Similarity=0.413  Sum_probs=49.9

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      .+..++++++..+|++||+||+...+.++|+|.||||++|++|+                      +.+||+||+.||||
T Consensus        26 ~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~----------------------~~~aa~REl~EEtG   83 (165)
T 3oga_A           26 RQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGER----------------------IEEALRREIREELG   83 (165)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCC----------------------HHHHHHHHHHHHHC
T ss_pred             ceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCC----------------------HHHHHHHHHHHHhC
Confidence            34455566667789999999997767889999999999999998                      99999999999999


Q ss_pred             CCCCC
Q 026577          205 VPSES  209 (236)
Q Consensus       205 l~~~~  209 (236)
                      +.+..
T Consensus        84 l~~~~   88 (165)
T 3oga_A           84 EQLIL   88 (165)
T ss_dssp             SSCCE
T ss_pred             CCccc
Confidence            99864

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.43  E-value=8.3e-13  Score=104.50  Aligned_cols=79  Identities=19%  Similarity=0.331  Sum_probs=58.3

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++|+++ +..+|++||+||+ .  ..+|.|.||||++|++|+                      +.+||+||+.||||+.
T Consensus         6 ~~v~~i-i~~~~~vLl~~r~-~--~~~~~w~~PgG~ve~gEs----------------------~~~aa~REl~EEtGl~   59 (153)
T 3shd_A            6 VTVACV-VHAEGKFLVVEET-I--NGKALWNQPAGHLEADET----------------------LVEAAARELWEETGIS   59 (153)
T ss_dssp             EEEEEE-EEETTEEEEEEEE-E--TTEEEEECSEEECCTTCC----------------------HHHHHHHHHHHHHCCC
T ss_pred             eEEEEE-EEeCCEEEEEEec-C--CCCCCEECCeEEeCCCCC----------------------HHHHHHHHHHHHHCcc
Confidence            345444 4568999999998 2  457899999999999998                      9999999999999999


Q ss_pred             CCCCccceeEEeeeeeecc---eeeeeEEEE
Q 026577          207 SESLVSYSLLIRYQVVVPA---LLLCGYMCT  234 (236)
Q Consensus       207 ~~~l~~~~ll~~~~~~~~~---~~~~~~~~~  234 (236)
                      +...   .++..+....+.   ....-|.|.
T Consensus        60 ~~~~---~~~~~~~~~~~~~~~~~~~~f~~~   87 (153)
T 3shd_A           60 AQPQ---HFIRMHQWIAPDKTPFLRFLFAIE   87 (153)
T ss_dssp             CCCC---EEEEEEEECCTTSCCEEEEEEEEE
T ss_pred             cccC---cEEEEEEEecCCCceEEEEEEEEE
Confidence            8754   345554433332   333456654

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.42  E-value=5.9e-13  Score=103.36  Aligned_cols=81  Identities=27%  Similarity=0.400  Sum_probs=60.6

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      .++++++..+|++||.||+.. +.++|+|+||||++|++|+                      +.++|+||+.||||+.+
T Consensus        10 ~~~~~ii~~~~~vLl~~r~~~-~~~~g~w~lPgG~ve~gE~----------------------~~~aa~RE~~EE~Gl~~   66 (140)
T 2rrk_A           10 EVVAAIIERDGKILLAQRPAQ-SDQAGLWEFAGGKVEPDES----------------------QRQALVRELREELGIEA   66 (140)
T ss_dssp             EEEEEEEEETTEEEEEECCSS-CSCCCCEECCEEECCTTSC----------------------HHHHHHHHHHHHSCEEE
T ss_pred             eEEEEEEEcCCEEEEEEcCCC-CCCCCEEECCceecCCCCC----------------------HHHHHHHHHHHHHCCee
Confidence            344445567899999999855 4789999999999999998                      99999999999999987


Q ss_pred             CCCccceeEEeeeeeecc--eeeeeEEEE
Q 026577          208 ESLVSYSLLIRYQVVVPA--LLLCGYMCT  234 (236)
Q Consensus       208 ~~l~~~~ll~~~~~~~~~--~~~~~~~~~  234 (236)
                      ..+   .+++.+.+.++.  ..+..|.|.
T Consensus        67 ~~~---~~~~~~~~~~~~~~~~~~~~~~~   92 (140)
T 2rrk_A           67 TVG---EYVASHQREVSGRIIHLHAWHVP   92 (140)
T ss_dssp             ECC---EEEEEEEEEETTEEEEEEEEEES
T ss_pred             ecc---cEEEEEEEecCCcEEEEEEEEEE
Confidence            644   345555445554  334455553

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.42  E-value=6.3e-13  Score=106.06  Aligned_cols=84  Identities=27%  Similarity=0.389  Sum_probs=63.4

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ..+++++++.+|++||+||... +.++|+|.||||++|++|+                      +.+||+||+.||||+.
T Consensus        30 ~~~~~~i~~~~~~vLL~~r~~~-~~~~g~w~~PgG~ve~gE~----------------------~~~aa~RE~~EEtGl~   86 (158)
T 3hhj_A           30 IVVACALLDQDNRVLLTQRPEG-KSLAGLWEFPGGKVEQGET----------------------PEASLIRELEEELGVH   86 (158)
T ss_dssp             EEEEEEEBCTTSEEEEEECCCT-TSCCCCCBCCEEECCTTCC----------------------HHHHHHHHHHHHHCCB
T ss_pred             EEEEEEEEeCCCEEEEEEeCCC-CCCCCEEECCceeecCCCC----------------------HHHHHHHHHHHHhCcE
Confidence            4556677778899999999855 5789999999999999998                      9999999999999999


Q ss_pred             CCCCccceeEEeeeeeecc--eeeeeEEEE
Q 026577          207 SESLVSYSLLIRYQVVVPA--LLLCGYMCT  234 (236)
Q Consensus       207 ~~~l~~~~ll~~~~~~~~~--~~~~~~~~~  234 (236)
                      +.... ...+..+...++.  .....|.|.
T Consensus        87 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  115 (158)
T 3hhj_A           87 VQADN-LFPLTFASHGYETFHLLMPLYFCS  115 (158)
T ss_dssp             CCGGG-CEEEEEEEEECSSCEEEEEEEEES
T ss_pred             eecce-EEEEEEEeeccCCcEEEEEEEEEE
Confidence            87543 2223334444443  455556654

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.42  E-value=8.5e-13  Score=102.37  Aligned_cols=83  Identities=23%  Similarity=0.272  Sum_probs=58.1

Q ss_pred             eEEEEEEEeC---CCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577          127 LGNGAVVETS---DKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI  203 (236)
Q Consensus       127 lgv~~vl~t~---dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt  203 (236)
                      .++++++++.   ++++||+||+.    .+|.|.||||++|++|+                      +.+||+||+.|||
T Consensus         4 ~~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gE~----------------------~~~aa~RE~~EEt   57 (138)
T 1ktg_A            4 KAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGED----------------------EWQAAIRETKEEA   57 (138)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTCC----------------------HHHHHHHHHHHHH
T ss_pred             EEEEEEEEEecCCCcEEEEEEccC----CCCcEeCCccccCCCCC----------------------HHHHHHHHHHHHH
Confidence            4566677754   46899999972    36899999999999998                      9999999999999


Q ss_pred             CCCCCCCccc-eeEEeeeeeec--ceeeeeEEEEe
Q 026577          204 GVPSESLVSY-SLLIRYQVVVP--ALLLCGYMCTS  235 (236)
Q Consensus       204 Gl~~~~l~~~-~ll~~~~~~~~--~~~~~~~~~~~  235 (236)
                      |+.+..+... .++..+....+  ......|.|..
T Consensus        58 Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~   92 (138)
T 1ktg_A           58 NITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKL   92 (138)
T ss_dssp             CCCGGGEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCccceEEeccccceEEEEeCCCceEEEEEEEEe
Confidence            9976654321 22233322232  24555666653

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.41  E-value=9.6e-13  Score=102.94  Aligned_cols=60  Identities=27%  Similarity=0.405  Sum_probs=52.7

Q ss_pred             CCceEEEEEEEeCC-CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHh
Q 026577          124 ASPLGNGAVVETSD-KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE  202 (236)
Q Consensus       124 ~~~lgv~~vl~t~d-g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE  202 (236)
                      ..+++|++++++.+ |++||+||+..    +|.|.||||++|++|+                      +.+||+||+.||
T Consensus         7 ~~~~~v~~~i~~~~~~~vLl~~r~~~----~g~w~~PgG~ve~gE~----------------------~~~aa~RE~~EE   60 (150)
T 2o1c_A            7 KRPVSILVVIYAQDTKRVLMLQRRDD----PDFWQSVTGSVEEGET----------------------APQAAMREVKEE   60 (150)
T ss_dssp             BCSEEEEEEEEETTTCEEEEEECSSS----TTCEESEEEECCTTCC----------------------HHHHHHHHHHHH
T ss_pred             cCceEEEEEEEeCCCCEEEEEEecCC----CCceECCccccCCCCC----------------------HHHHHHHHHHHH
Confidence            35678888888875 99999998853    6999999999999998                      999999999999


Q ss_pred             hCCCCCC
Q 026577          203 IGVPSES  209 (236)
Q Consensus       203 tGl~~~~  209 (236)
                      ||+.+..
T Consensus        61 tGl~~~~   67 (150)
T 2o1c_A           61 VTIDVVA   67 (150)
T ss_dssp             HCCCHHH
T ss_pred             hCCCccc
Confidence            9998764

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.41  E-value=4.7e-13  Score=106.44  Aligned_cols=80  Identities=26%  Similarity=0.423  Sum_probs=60.7

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ..+++++++.+|+|||+||+..  .++|.|.||||++|++|+                      +.+||+||++||||+.
T Consensus        21 ~~v~~~i~~~~~~vLl~~r~~~--~~~~~w~~PgG~ve~gE~----------------------~~~aa~REl~EEtGl~   76 (156)
T 3gg6_A           21 YVVLAVFLSEQDEVLLIQEAKR--ECRGSWYLPAGRMEPGET----------------------IVEALQREVKEEAGLH   76 (156)
T ss_dssp             EEEEEECBCTTSEEEEEECCCT--TSTTCEECSEEECCTTCC----------------------HHHHHHHHHHHHHCEE
T ss_pred             EEEEEEEEeCCCEEEEEEecCC--CCCCEEECCeeeccCCCC----------------------HHHHHHHHHHHhhCce
Confidence            3566677778899999999854  478999999999999998                      9999999999999998


Q ss_pred             CCCCccceeEEeeeeeecceeeeeEEEE
Q 026577          207 SESLVSYSLLIRYQVVVPALLLCGYMCT  234 (236)
Q Consensus       207 ~~~l~~~~ll~~~~~~~~~~~~~~~~~~  234 (236)
                      +...   .+++.+.. .+......|.|.
T Consensus        77 ~~~~---~~~~~~~~-~~~~~~~~f~~~  100 (156)
T 3gg6_A           77 CEPE---TLLSVEER-GPSWVRFVFLAR  100 (156)
T ss_dssp             EEEE---EEEEEEES-STTEEEEEEEEE
T ss_pred             eEee---eEEEEEcC-CCCEEEEEEEEE
Confidence            7643   34554432 223344456554

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.41  E-value=1.7e-13  Score=112.17  Aligned_cols=63  Identities=19%  Similarity=0.196  Sum_probs=54.8

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ++.+|++++++.+|++||+||+.. ..++|.|.||||++|++|+                      +.+||+||+.||||
T Consensus        40 ~~~~v~v~i~~~~~~vLL~~r~~~-~~~~~~w~~PgG~ve~gEs----------------------~~~aa~REl~EEtG   96 (182)
T 2yvp_A           40 PVAASFVLPVTERGTALLVRQYRH-PTGKFLLEVPAGKVDEGET----------------------PEAAARRELREEVG   96 (182)
T ss_dssp             SCEEEEEEEBCTTSEEEEEEEEEG-GGTEEEEECCEEECCTTCC----------------------HHHHHHHHHHHHHC
T ss_pred             cCCEEEEEEEcCCCEEEEEEeccC-CCCCcEEEeccccCCCCcC----------------------HHHHHHHHHHHHhC
Confidence            455777888888999999998854 4678999999999999998                      99999999999999


Q ss_pred             CCCCCC
Q 026577          205 VPSESL  210 (236)
Q Consensus       205 l~~~~l  210 (236)
                      +.+..+
T Consensus        97 l~~~~~  102 (182)
T 2yvp_A           97 AEAETL  102 (182)
T ss_dssp             EECSCE
T ss_pred             CCcccE
Confidence            987643

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.41  E-value=1.4e-12  Score=106.83  Aligned_cols=84  Identities=15%  Similarity=0.144  Sum_probs=62.4

Q ss_pred             CCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577          124 ASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI  203 (236)
Q Consensus       124 ~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt  203 (236)
                      ..+..++++++..+|++||+||...  .++|.|.||||++|++|+                      +.+||+||+.|||
T Consensus        22 ~~~~~~~~~vi~~~~~vLL~~r~~~--~~~g~W~lPgG~ve~gEs----------------------~~~aa~REl~EEt   77 (176)
T 3q93_A           22 GASRLYTLVLVLQPQRVLLGMKKRG--FGAGRWNGFGGKVQEGET----------------------IEDGARRELQEES   77 (176)
T ss_dssp             -CEEEEEEEEEECSSEEEEEEECSS--TTTTSEECEEEECCTTSC----------------------HHHHHHHHHHHHH
T ss_pred             CCCcEEEEEEEEeCCEEEEEEEcCC--CCCCeEECceecCCCCCC----------------------HHHHHHHHHHHHH
Confidence            3444555566678899999999643  578999999999999998                      9999999999999


Q ss_pred             CCCCCCCccceeEEeeeeeecc----eeeeeEEEE
Q 026577          204 GVPSESLVSYSLLIRYQVVVPA----LLLCGYMCT  234 (236)
Q Consensus       204 Gl~~~~l~~~~ll~~~~~~~~~----~~~~~~~~~  234 (236)
                      |+.+..+   .+++.+...++.    .....|.|.
T Consensus        78 Gl~~~~~---~~l~~~~~~~~~~~~~~~~~~f~~~  109 (176)
T 3q93_A           78 GLTVDAL---HKVGQIVFEFVGEPELMDVHVFCTD  109 (176)
T ss_dssp             SCEESCC---EEEEEEEEEETTCSCEEEEEEEEES
T ss_pred             CCcceee---EEEEEEEEEcCCCCcEEEEEEEEEE
Confidence            9998744   345555444432    344556653

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.40  E-value=6.7e-13  Score=107.23  Aligned_cols=63  Identities=22%  Similarity=0.300  Sum_probs=56.0

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEE-eccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~-fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ..++++++++.+|++||.||+.....++|+|. ||||++|++|+                      +.+||+||+.||||
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs----------------------~~~aa~REl~EEtG   91 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGET----------------------YEEAFRREAREELN   91 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSC----------------------HHHHHHHHHHHHHS
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCC----------------------HHHHHHHHHHHHHC
Confidence            55777788888999999999866667899998 99999999998                      99999999999999


Q ss_pred             CCCCCC
Q 026577          205 VPSESL  210 (236)
Q Consensus       205 l~~~~l  210 (236)
                      +.+...
T Consensus        92 l~~~~~   97 (171)
T 1q27_A           92 VEIDAL   97 (171)
T ss_dssp             CTTSSS
T ss_pred             Cccccc
Confidence            998754

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.40  E-value=2.7e-13  Score=103.70  Aligned_cols=78  Identities=19%  Similarity=0.473  Sum_probs=58.0

Q ss_pred             EEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       131 ~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      +++++.+|++||.||+.. +.++|+|.||||++|++|+                      +.++|+||+.||||+.+..+
T Consensus         9 ~ii~~~~~~vLl~~r~~~-~~~~g~w~~PgG~~e~gE~----------------------~~~aa~RE~~EE~G~~~~~~   65 (129)
T 1mut_A            9 GIIRNENNEIFITRRAAD-AHMANKLEFPGGKIEMGET----------------------PEQAVVRELQEEVGITPQHF   65 (129)
T ss_dssp             EECEETTTEEEEEECSSC-CSSSCCEECCCCCSSSCSS----------------------TTHHHHHHHHTTTCCSSCEE
T ss_pred             EEEEecCCEEEEEEeCCC-CCCCCeEECCccCcCCCCC----------------------HHHHHHHHHHHHhCCccccc
Confidence            345578899999999865 4889999999999999998                      78999999999999987643


Q ss_pred             ccceeEEeeeeeecc--eeeeeEEEE
Q 026577          211 VSYSLLIRYQVVVPA--LLLCGYMCT  234 (236)
Q Consensus       211 ~~~~ll~~~~~~~~~--~~~~~~~~~  234 (236)
                      .   +++.+.+.++.  ..+..|.|.
T Consensus        66 ~---~~~~~~~~~~~~~~~~~~~~~~   88 (129)
T 1mut_A           66 S---LFEKLEYEFPDRHITLWFWLVE   88 (129)
T ss_dssp             C---CCCCCBCCCSSCEEECCCEEEE
T ss_pred             e---EEEEEEEecCCceEEEEEEEEE
Confidence            2   23333333333  334455554

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.39  E-value=1.2e-12  Score=103.18  Aligned_cols=70  Identities=29%  Similarity=0.393  Sum_probs=54.1

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++|.+++ ..+|++||+||+.. +. +|.|.||||++|++|+                      +.+||+||+.||||+.
T Consensus         9 ~~v~~ii-~~~~~vLl~~r~~~-~~-~~~w~lPgG~ve~gE~----------------------~~~aa~RE~~EEtGl~   63 (153)
T 2b0v_A            9 VTVAAVI-EQDDKYLLVEEIPR-GT-AIKLNQPAGHLEPGES----------------------IIQACSREVLEETGHS   63 (153)
T ss_dssp             EEEEEEC-EETTEEEEEEECSS-SS-CCEEECSEEECCTTSC----------------------HHHHHHHHHHHHHSEE
T ss_pred             EEEEEEE-eeCCEEEEEEEcCC-CC-CCeEECCCcCcCCCCC----------------------HHHHHHHHHHHhhCcE
Confidence            3454444 47899999999865 34 8999999999999998                      9999999999999998


Q ss_pred             CCCCccceeEEeeeeeec
Q 026577          207 SESLVSYSLLIRYQVVVP  224 (236)
Q Consensus       207 ~~~l~~~~ll~~~~~~~~  224 (236)
                      +...   .+++.+....+
T Consensus        64 ~~~~---~~~~~~~~~~~   78 (153)
T 2b0v_A           64 FLPE---VLTGIYHWTCA   78 (153)
T ss_dssp             EEEE---EEEEEEEEEET
T ss_pred             eccc---eEEEEEEEeCC
Confidence            7632   34555444444

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.39  E-value=4.5e-13  Score=106.03  Aligned_cols=63  Identities=16%  Similarity=0.136  Sum_probs=52.7

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ++-+|++++++.+|++||+++.+. ...++.|.||||++|++|+                      +.+||+||+.||||
T Consensus         4 ~~~~v~vi~~~~~~~vLLv~~~r~-~~~~~~w~~PgG~ve~gEt----------------------~~~aa~REl~EEtG   60 (145)
T 2w4e_A            4 GPRAVFILPVTAQGEAVLIRQFRY-PLRATITEIVAGGVEKGED----------------------LGAAAARELLEEVG   60 (145)
T ss_dssp             CCEEEEEEEEETTSEEEEEEEEET-TTTEEEEECEEEECCTTCC----------------------HHHHHHHHHHHHHC
T ss_pred             eCCEEEEEEEcCCCEEEEEEEEec-CCCCCEEEeCCccCCCCCC----------------------HHHHHHHHHHHhhC
Confidence            456788888889999988876533 2356799999999999998                      99999999999999


Q ss_pred             CCCCCC
Q 026577          205 VPSESL  210 (236)
Q Consensus       205 l~~~~l  210 (236)
                      +.+..+
T Consensus        61 l~~~~~   66 (145)
T 2w4e_A           61 GAASEW   66 (145)
T ss_dssp             EECSEE
T ss_pred             CccCeE
Confidence            987643

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.39  E-value=1.4e-12  Score=107.90  Aligned_cols=83  Identities=22%  Similarity=0.329  Sum_probs=57.9

Q ss_pred             eEEEEEEEeCCC--eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          127 LGNGAVVETSDK--KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       127 lgv~~vl~t~dg--~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      .++++++++.+|  +|||+||+.....++|.|.||||++|++|+                      +.+||+||+.||||
T Consensus        35 ~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs----------------------~~~aa~REl~EEtG   92 (194)
T 1nqz_A           35 RAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGET----------------------PTQAALREAQEEVA   92 (194)
T ss_dssp             EEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCC----------------------HHHHHHHHHHHHHC
T ss_pred             eEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCC----------------------HHHHHHHHHHHHHC
Confidence            445555567788  999999986555789999999999999998                      99999999999999


Q ss_pred             CCCCCCccceeEEeeeeeec--ceeeeeEEEE
Q 026577          205 VPSESLVSYSLLIRYQVVVP--ALLLCGYMCT  234 (236)
Q Consensus       205 l~~~~l~~~~ll~~~~~~~~--~~~~~~~~~~  234 (236)
                      +.+..+   .+++.+.....  .....-|.|.
T Consensus        93 l~~~~~---~~l~~~~~~~~~~~~~~~~f~~~  121 (194)
T 1nqz_A           93 LDPAAV---TLLGELDDVFTPVGFHVTPVLGR  121 (194)
T ss_dssp             CCGGGC---EEEEECCCEEETTTEEEEEEEEE
T ss_pred             CCccce---EEEEEccCccCCCCeEEEEEEEE
Confidence            988754   34444333322  2344556654

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.37  E-value=1.5e-12  Score=104.80  Aligned_cols=81  Identities=22%  Similarity=0.288  Sum_probs=60.5

Q ss_pred             eEEEEEEEeCC-CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          127 LGNGAVVETSD-KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       127 lgv~~vl~t~d-g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      +.+.+++.+.+ |+|||+||+.  ..++|.|.||||++|++|+                      +.+||+||+.||||+
T Consensus        11 ~~v~~vi~~~~~~~vLL~~r~~--~~~~g~w~lPgG~ve~gEs----------------------~~~aa~REl~EEtGl   66 (161)
T 3exq_A           11 LVTMVMVTDPETQRVLVEDKVN--VPWKAGHSFPGGHVEVGEP----------------------CATAAIREVFEETGL   66 (161)
T ss_dssp             EEEEEEEBCTTTCCEEEECCCC--CTTTCSBBCCCCBCCTTSC----------------------HHHHHHHHHHHHHCC
T ss_pred             EEEEEEEEeCCCCEEEEEEccC--CCCCCCEEccceecCCCCC----------------------HHHHHHHHHHHhhCc
Confidence            45566666555 6999999883  4788899999999999998                      999999999999999


Q ss_pred             CCCCCccceeEEeeeeeec----ceeeeeEEEE
Q 026577          206 PSESLVSYSLLIRYQVVVP----ALLLCGYMCT  234 (236)
Q Consensus       206 ~~~~l~~~~ll~~~~~~~~----~~~~~~~~~~  234 (236)
                      .+..+   .++..+....+    ......|.|.
T Consensus        67 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   96 (161)
T 3exq_A           67 RLSGV---TFCGTCEWFDDDRQHRKLGLLYRAS   96 (161)
T ss_dssp             EESCC---EEEEEEEEECSSCSSEEEEEEEEEC
T ss_pred             EecCC---cEEEEEecccCCCCeEEEEEEEEEe
Confidence            88744   34555554442    2445555553

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.36  E-value=3.8e-12  Score=105.30  Aligned_cols=81  Identities=21%  Similarity=0.334  Sum_probs=59.6

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      +.|++++.+ +|+|||+||...  ..+|+|.||||++|++|+                      +.++|+||+.||||+.
T Consensus        41 ~~v~~ii~~-~~~vLL~~r~~~--~~~g~w~lPgG~ve~gEs----------------------~~~aa~REl~EEtGl~   95 (189)
T 3cng_A           41 VIVGCIPEW-ENKVLLCKRAIA--PYRGKWTLPAGFMENNET----------------------LVQGAARETLEEANAR   95 (189)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSS--SSTTCEECSEEECCTTCC----------------------HHHHHHHHHHHHHCCC
T ss_pred             eEEEEEEEe-CCEEEEEEccCC--CCCCeEECceeeccCCCC----------------------HHHHHHHHHHHHHCCc
Confidence            455556654 899999999865  348999999999999998                      9999999999999998


Q ss_pred             CCCCccceeEEeeeeeecceeeeeEEEEe
Q 026577          207 SESLVSYSLLIRYQVVVPALLLCGYMCTS  235 (236)
Q Consensus       207 ~~~l~~~~ll~~~~~~~~~~~~~~~~~~~  235 (236)
                      +...   .++.++...........|.|..
T Consensus        96 ~~~~---~~~~~~~~~~~~~~~~~f~~~~  121 (189)
T 3cng_A           96 VEIR---ELYAVYSLPHISQVYMLFRAKL  121 (189)
T ss_dssp             EEEE---EEEEEEEEGGGTEEEEEEEEEE
T ss_pred             cccc---eeEEEEecCCCcEEEEEEEEEe
Confidence            7632   3444443322234555666653

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.36  E-value=1.3e-12  Score=109.90  Aligned_cols=63  Identities=14%  Similarity=0.156  Sum_probs=53.8

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCC-CCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPE-PQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI  203 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~E-p~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt  203 (236)
                      ++-+|++++++.+|++||+||... ...+|.|.||||++| ++|+                      +.+||+||+.|||
T Consensus        42 ~~~av~v~i~~~~~~vLLvrr~r~-~~~~~~w~lPgG~ve~~gEs----------------------~~~aa~REl~EEt   98 (207)
T 1mk1_A           42 HFGAVAIVAMDDNGNIPMVYQYRH-TYGRRLWELPAGLLDVAGEP----------------------PHLTAARELREEV   98 (207)
T ss_dssp             ECCEEEEEECCTTSEEEEEEEEET-TTTEEEEECCEEECCSTTCC----------------------HHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEcCCCEEEEEEeecC-CCCCcEEEeCCccccCCCCC----------------------HHHHHHHHHHHHH
Confidence            344777777888999999998854 367899999999999 9998                      9999999999999


Q ss_pred             CCCCCCC
Q 026577          204 GVPSESL  210 (236)
Q Consensus       204 Gl~~~~l  210 (236)
                      |+.+..+
T Consensus        99 Gl~~~~~  105 (207)
T 1mk1_A           99 GLQASTW  105 (207)
T ss_dssp             CEEEEEE
T ss_pred             CCccccc
Confidence            9987643

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.36  E-value=4.3e-12  Score=98.95  Aligned_cols=80  Identities=20%  Similarity=0.325  Sum_probs=58.1

Q ss_pred             ceEEEEEEEe--CCCe--EEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHH
Q 026577          126 PLGNGAVVET--SDKK--ILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVE  201 (236)
Q Consensus       126 ~lgv~~vl~t--~dg~--vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~E  201 (236)
                      .++|++++..  .+|+  +||+||+..    ++.|.||||++|++|+                      +.+||+||+.|
T Consensus         9 ~~~v~~vi~~~~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gE~----------------------~~~aa~RE~~E   62 (139)
T 2yyh_A            9 LLATDVIIRLWDGENFKGIVLIERKYP----PVGLALPGGFVEVGER----------------------VEEAAAREMRE   62 (139)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEECSS----SCSEECCEEECCTTCC----------------------HHHHHHHHHHH
T ss_pred             eEEEEEEEEEEcCCCcEEEEEEEecCC----CCcEECccccCCCCCC----------------------HHHHHHHHHHH
Confidence            3566777765  6788  999999854    3459999999999998                      99999999999


Q ss_pred             hhCCCCCCCccceeEEeeeeee----cceeeeeEEEE
Q 026577          202 EIGVPSESLVSYSLLIRYQVVV----PALLLCGYMCT  234 (236)
Q Consensus       202 EtGl~~~~l~~~~ll~~~~~~~----~~~~~~~~~~~  234 (236)
                      |||+.+...   .++..+....    .......|.|+
T Consensus        63 EtGl~~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~   96 (139)
T 2yyh_A           63 ETGLEVRLH---KLMGVYSDPERDPRAHVVSVVWIGD   96 (139)
T ss_dssp             HHCCCCEEE---EEEEEECCTTSCTTSCEEEEEEEEE
T ss_pred             HHCCCcccc---eEEEEECCCCcCCCceEEEEEEEEe
Confidence            999987633   3445444321    12345556664

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.35  E-value=1.5e-12  Score=102.73  Aligned_cols=58  Identities=19%  Similarity=0.340  Sum_probs=49.1

Q ss_pred             CceEEEEEEE---eCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHH
Q 026577          125 SPLGNGAVVE---TSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVE  201 (236)
Q Consensus       125 ~~lgv~~vl~---t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~E  201 (236)
                      ++.+|.+++.   +.+++|||+||+..     |.|.||||++|++|+                      +.+||+||+.|
T Consensus         4 ~~~~v~vvi~~~~~~~~~vLl~~r~~~-----g~w~~PgG~ve~gE~----------------------~~~aa~REl~E   56 (149)
T 3son_A            4 QPFQVLVIPFIKTEANYQFGVLHRTDA-----DVWQFVAGGGEDEEA----------------------ISETAKRESIE   56 (149)
T ss_dssp             CCCEEEEEEEEECSSSEEEEEEEESSS-----SCEECEEEECCTTCC----------------------HHHHHHHHHHH
T ss_pred             CceEEEEEEEEecCCCeEEEEEEEcCC-----CCEeCCccccCCCCC----------------------HHHHHHHHHHH
Confidence            4556655554   45679999999853     999999999999998                      99999999999


Q ss_pred             hhCCCCCC
Q 026577          202 EIGVPSES  209 (236)
Q Consensus       202 EtGl~~~~  209 (236)
                      |||+.+..
T Consensus        57 EtGl~~~~   64 (149)
T 3son_A           57 ELNLDVDV   64 (149)
T ss_dssp             HHTCCSCC
T ss_pred             HhCCCccc
Confidence            99999875

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.35  E-value=1.4e-12  Score=104.35  Aligned_cols=59  Identities=20%  Similarity=0.232  Sum_probs=50.7

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ..+.+++++.+ +|+|||+||+.     +|.|.||||++|++|+                      +.+||+||++||||
T Consensus         5 ~~~~v~~vi~~-~~~vLL~~r~~-----~g~w~lPgG~ve~gEs----------------------~~~aa~REl~EEtG   56 (159)
T 3f6a_A            5 RHFTVSVFIVC-KDKVLLHLHKK-----AKKMLPLGGHIEVNEL----------------------PEEACIREAKEEAG   56 (159)
T ss_dssp             SCEEEEEEEEE-TTEEEEEECSS-----SCCEECEEEECCTTCC----------------------HHHHHHHHHHHHHC
T ss_pred             ceEEEEEEEEE-CCEEEEEEcCC-----CCeEECCccCccCCCC----------------------HHHHHHHHHHHHhC
Confidence            45567777776 78999999874     4899999999999998                      99999999999999


Q ss_pred             CCCCCCc
Q 026577          205 VPSESLV  211 (236)
Q Consensus       205 l~~~~l~  211 (236)
                      +.+..+.
T Consensus        57 l~~~~~~   63 (159)
T 3f6a_A           57 LNVTLYN   63 (159)
T ss_dssp             CCCEECC
T ss_pred             CCceecc
Confidence            9887543

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.34  E-value=1.2e-12  Score=104.20  Aligned_cols=57  Identities=28%  Similarity=0.408  Sum_probs=50.2

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      ..+|++++++.+|+|||+||+.    .+|+|.||||++|++|+                      +.+||+||+.||||+
T Consensus        14 ~~~v~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gE~----------------------~~~aa~RE~~EEtGl   67 (165)
T 1f3y_A           14 RRNVGICLMNNDKKIFAASRLD----IPDAWQMPQGGIDEGED----------------------PRNAAIRELREETGV   67 (165)
T ss_dssp             CCEEEEEEECTTSCEEEEEETT----EEEEEECCEEECCTTCC----------------------HHHHHHHHHHHHHCC
T ss_pred             eeeEEEEEECCCCcEEEEecCC----CCCcEECCeeccCCCCC----------------------HHHHHHHHHHHhhCC
Confidence            3466778888899999999983    36999999999999998                      999999999999999


Q ss_pred             CCC
Q 026577          206 PSE  208 (236)
Q Consensus       206 ~~~  208 (236)
                      .+.
T Consensus        68 ~~~   70 (165)
T 1f3y_A           68 TSA   70 (165)
T ss_dssp             CSE
T ss_pred             Chh
Confidence            875

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.34  E-value=5.9e-12  Score=100.47  Aligned_cols=50  Identities=34%  Similarity=0.533  Sum_probs=43.7

Q ss_pred             eCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          135 TSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       135 t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      +.++++||+||+..    +|.|.||||++|++|+                      +.+||+||++||||+.....
T Consensus        21 n~~~e~LL~~r~~~----~~~W~lPgG~ve~gEt----------------------~~~aa~REl~EEtGl~~~~~   70 (155)
T 3u53_A           21 NNAIEFLLLQASDG----IHHWTPPKGHVEPGED----------------------DLETALRETQEEAGIEAGQL   70 (155)
T ss_dssp             SCSEEEEEEEESSS----SCCEECSEEECCSSCC----------------------HHHHHHHHHHHHHCCCGGGE
T ss_pred             CCCcEEEEEEecCC----CCCEECCeeeccCCCC----------------------HHHHHHHHHHHHHCCccccc
Confidence            34568999999854    5899999999999999                      99999999999999988754

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.34  E-value=3.4e-12  Score=103.05  Aligned_cols=80  Identities=21%  Similarity=0.349  Sum_probs=58.3

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ...+|++++. .||++||+||...    +|.|.||||++|++|+                      +.+||+||+.||||
T Consensus        22 ~~~~v~~ii~-~~~~vLL~~r~~~----~~~w~~PgG~ve~gEs----------------------~~~aa~REl~EEtG   74 (171)
T 3id9_A           22 MQVRVTGILI-EDEKVLLVKQKVA----NRDWSLPGGRVENGET----------------------LEEAMIREMREETG   74 (171)
T ss_dssp             CEEEEEEEEE-ETTEEEEEECSST----TCCEECCEEECCTTCC----------------------HHHHHHHHHHHHHC
T ss_pred             eEEEEEEEEE-ECCEEEEEEEECC----CCeEECCCccCCCCCC----------------------HHHHHHHHHHHHHC
Confidence            4456766666 4799999999853    7999999999999998                      99999999999999


Q ss_pred             CCCCCCccceeEEeeeeeec--ceeeeeEEEE
Q 026577          205 VPSESLVSYSLLIRYQVVVP--ALLLCGYMCT  234 (236)
Q Consensus       205 l~~~~l~~~~ll~~~~~~~~--~~~~~~~~~~  234 (236)
                      +.+...   .++..+.....  ......|.|.
T Consensus        75 l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  103 (171)
T 3id9_A           75 LEVKIK---KLLYVCDKPDASPSLLHITFLLE  103 (171)
T ss_dssp             CCEEEE---EEEEEEEETTSSSCEEEEEEEEE
T ss_pred             Cccccc---eEEEEEcccCCCCcEEEEEEEEE
Confidence            997532   34444443322  2334445443

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.33  E-value=3e-12  Score=107.20  Aligned_cols=62  Identities=21%  Similarity=0.356  Sum_probs=51.3

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ++-+|++++++.+ ++||+||.+. +..+|.|.||||++|++|+                      +.+||+||+.||||
T Consensus        48 ~~~av~vl~~~~~-~vLLvrq~r~-~~~~~~welPgG~ve~gEs----------------------~~~aA~REl~EEtG  103 (198)
T 1vhz_A           48 NREAVMIVPIVDD-HLILIREYAV-GTESYELGFSKGLIDPGES----------------------VYEAANRELKEEVG  103 (198)
T ss_dssp             CCCEEEEEEEETT-EEEEEEEEET-TTTEEEEECEEEECCTTCC----------------------HHHHHHHHHHHHHS
T ss_pred             CCCEEEEEEEECC-EEEEEEcccC-CCCCcEEEeCcccCCCCcC----------------------HHHHHHHHHHHHHC
Confidence            3446666667666 9999988744 4668999999999999998                      99999999999999


Q ss_pred             CCCCCC
Q 026577          205 VPSESL  210 (236)
Q Consensus       205 l~~~~l  210 (236)
                      +.+..+
T Consensus       104 l~~~~~  109 (198)
T 1vhz_A          104 FGANDL  109 (198)
T ss_dssp             EEEEEE
T ss_pred             CCcCce
Confidence            987643

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.32  E-value=5.5e-12  Score=102.57  Aligned_cols=76  Identities=20%  Similarity=0.368  Sum_probs=55.1

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      .+.++++++..+|++||++|+      +|.|.||||++|++|+                      +.+||+||+.||||+
T Consensus        15 ~~~~~~~ii~~~~~vLL~~r~------~g~w~lPgG~ve~gEs----------------------~~~aa~REl~EEtGl   66 (163)
T 3f13_A           15 LARRATAIIEMPDGVLVTASR------GGRYNLPGGKANRGEL----------------------RSQALIREIREETGL   66 (163)
T ss_dssp             CEEEEEEECEETTEEEEEECC---------BBCSEEECCTTCC----------------------HHHHHHHHHHHHHCC
T ss_pred             ceEEEEEEEEeCCEEEEEEEC------CCeEECCceeCCCCCC----------------------HHHHHHHHHHHHHCc
Confidence            345556666678999999986      4899999999999999                      999999999999999


Q ss_pred             CCCCCccceeEEeeeeeecceeeeeEEEE
Q 026577          206 PSESLVSYSLLIRYQVVVPALLLCGYMCT  234 (236)
Q Consensus       206 ~~~~l~~~~ll~~~~~~~~~~~~~~~~~~  234 (236)
                      .+..+.   ++..+  ..+......|.|.
T Consensus        67 ~~~~~~---~l~~~--~~~~~~~~~f~~~   90 (163)
T 3f13_A           67 RINSML---YLFDH--ITPFNAHKVYLCI   90 (163)
T ss_dssp             CCCEEE---EEEEE--ECSSEEEEEEEEE
T ss_pred             ccceeE---EEEEE--ecCCeEEEEEEEE
Confidence            987542   33333  2334555556664

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.31  E-value=4.8e-12  Score=108.26  Aligned_cols=83  Identities=18%  Similarity=0.310  Sum_probs=62.2

Q ss_pred             ceEEEEEEE---eCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHh
Q 026577          126 PLGNGAVVE---TSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE  202 (236)
Q Consensus       126 ~lgv~~vl~---t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE  202 (236)
                      .++|+++++   +.+++|||++|...  .++|.|.+|||++|++|+                      +.+||+||+.||
T Consensus        13 ~v~v~~vi~~~~~~~~~vLLv~r~~~--~~~g~w~lPGG~ve~gEs----------------------~~~Aa~REl~EE   68 (226)
T 2fb1_A           13 YLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDES----------------------VDDAAKRVLAEL   68 (226)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECEEEECCTTSC----------------------HHHHHHHHHHHH
T ss_pred             eEEEEEEEEEEeCCCCEEEEEECcCC--CCCCCEECCeeccCCCCC----------------------HHHHHHHHHHHH
Confidence            367777777   44689999999864  568999999999999999                      999999999999


Q ss_pred             hCCCCCCCccceeEEeeeeee--c--ceeeeeEEEEe
Q 026577          203 IGVPSESLVSYSLLIRYQVVV--P--ALLLCGYMCTS  235 (236)
Q Consensus       203 tGl~~~~l~~~~ll~~~~~~~--~--~~~~~~~~~~~  235 (236)
                      ||+....+   ..++.+....  |  ..+...|+|..
T Consensus        69 tGl~~~~~---~~l~~~~~~~r~~~~~~v~~~y~a~~  102 (226)
T 2fb1_A           69 TGLENVYM---EQVGAFGAIDRDPGERVVSIAYYALI  102 (226)
T ss_dssp             HCCCSCEE---EEEEEECCTTSSSSSCEEEEEEEEEC
T ss_pred             HCCCCCce---EEEEEeCCCCcCCCceEEEEEEEEEe
Confidence            99998744   2344443221  2  23455677754

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.31  E-value=6.9e-12  Score=99.40  Aligned_cols=53  Identities=26%  Similarity=0.486  Sum_probs=46.1

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      +.+++++. .+|++||+||       +|.|.||||++|++|+                      +.+||+||+.||||+.
T Consensus        20 ~~~~~ii~-~~~~vLl~~r-------~~~w~lPgG~ve~gE~----------------------~~~aa~REl~EEtGl~   69 (154)
T 2pqv_A           20 VRATALIV-QNHKLLVTKD-------KGKYYTIGGAIQVNES----------------------TEDAVVREVKEELGVK   69 (154)
T ss_dssp             EEEEECCE-ETTEEEEEEE-------TTEEECEEEECBTTCC----------------------HHHHHHHHHHHHHCCC
T ss_pred             EEEEEEEE-ECCEEEEEec-------CCeEECcccCcCCCCC----------------------HHHHHHHHHHHHhCCe
Confidence            35566666 4789999999       5899999999999999                      9999999999999998


Q ss_pred             CCC
Q 026577          207 SES  209 (236)
Q Consensus       207 ~~~  209 (236)
                      +..
T Consensus        70 ~~~   72 (154)
T 2pqv_A           70 AQA   72 (154)
T ss_dssp             EEE
T ss_pred             eee
Confidence            763

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.30  E-value=3.9e-12  Score=103.01  Aligned_cols=60  Identities=17%  Similarity=0.299  Sum_probs=51.0

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ++.+|++++++ +|++||+||.+. +.++|.|.||||++|++|+                      +.+||+||+.||||
T Consensus        33 ~~~~v~vii~~-~~~vLL~~~~r~-~~~~~~w~lPgG~ve~gEs----------------------~~~aa~REl~EEtG   88 (170)
T 1v8y_A           33 HKPAVAVIALR-EGRMLFVRQMRP-AVGLAPLEIPAGLIEPGED----------------------PLEAARRELAEQTG   88 (170)
T ss_dssp             ECCEEEEEEEE-TTEEEEEECCBT-TTTBCCBBCSEEECCTTCC----------------------HHHHHHHHHHHHHS
T ss_pred             cCCeEEEEEEE-CCEEEEEEEEeC-CCCCCEEECCccccCCCCC----------------------HHHHHHHHHHHHHC
Confidence            34467777787 999999998744 3678999999999999998                      99999999999999


Q ss_pred             CCCCC
Q 026577          205 VPSES  209 (236)
Q Consensus       205 l~~~~  209 (236)
                      + +..
T Consensus        89 l-~~~   92 (170)
T 1v8y_A           89 L-SGD   92 (170)
T ss_dssp             E-EEE
T ss_pred             C-CcC
Confidence            9 553

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.30  E-value=1e-11  Score=103.26  Aligned_cols=55  Identities=22%  Similarity=0.449  Sum_probs=48.3

Q ss_pred             CceEEEEEEEeCCC-eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577          125 SPLGNGAVVETSDK-KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI  203 (236)
Q Consensus       125 ~~lgv~~vl~t~dg-~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt  203 (236)
                      ..+++++++++.++ +|||+||..     +|.|.||||++|++|+                      +.+||+||+.|||
T Consensus        44 ~h~~~~~vv~~~~~~~vLL~~r~~-----~g~w~lPgG~ve~gEs----------------------~~eaa~REl~EEt   96 (197)
T 3fcm_A           44 AHLTSSAFAVNKERNKFLMIHHNI-----YNSWAWTGGHSDNEKD----------------------QLKVAIKELKEET   96 (197)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEETT-----TTEEECEEEECTTCCB----------------------HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEEECCCCEEEEEEecC-----CCCEECCccccCCCCC----------------------HHHHHHHHHHHHH
Confidence            34577788888776 999999873     4899999999999998                      9999999999999


Q ss_pred             CCC
Q 026577          204 GVP  206 (236)
Q Consensus       204 Gl~  206 (236)
                      |+.
T Consensus        97 Gl~   99 (197)
T 3fcm_A           97 GVK   99 (197)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            998

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.30  E-value=9.6e-12  Score=102.44  Aligned_cols=70  Identities=21%  Similarity=0.302  Sum_probs=54.0

Q ss_pred             eEEEEEEEe---C----CCeEEEEEEcC-----CCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHH
Q 026577          127 LGNGAVVET---S----DKKILLLQRSN-----NVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDS  194 (236)
Q Consensus       127 lgv~~vl~t---~----dg~vLl~rRs~-----~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~a  194 (236)
                      ++|.++++.   .    +++|||+||+.     ....++|.|.||||++|++|+                      +.+|
T Consensus        28 ~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs----------------------~~~a   85 (187)
T 3i9x_A           28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENES----------------------AEQA   85 (187)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSC----------------------HHHH
T ss_pred             ceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCC----------------------HHHH
Confidence            456555553   2    46899999964     234678999999999999998                      9999


Q ss_pred             HHHHHHHhhCCCCCCCccceeEEeeee
Q 026577          195 ITREVVEEIGVPSESLVSYSLLIRYQV  221 (236)
Q Consensus       195 a~REl~EEtGl~~~~l~~~~ll~~~~~  221 (236)
                      |+||++||||+.+..+   .+++.+..
T Consensus        86 a~REl~EEtGl~~~~~---~~l~~~~~  109 (187)
T 3i9x_A           86 AERELEEETSLTDIPL---IPFGVFDK  109 (187)
T ss_dssp             HHHHHHHHHCCCSCCC---EEEEEECC
T ss_pred             HHHHHHHHHCCCCcce---EEEEEEcC
Confidence            9999999999987654   34555443

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.30  E-value=7.1e-12  Score=103.89  Aligned_cols=75  Identities=27%  Similarity=0.501  Sum_probs=55.7

Q ss_pred             EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      +++++. .+|+|||+||..     +|+|.||||++|++|+                      +.+||+||+.||||+.+.
T Consensus         7 ~~~vi~-~~~~vLL~~r~~-----~g~W~lPGG~ve~gEs----------------------~~~aa~REl~EEtGl~~~   58 (188)
T 3fk9_A            7 TNCIVV-DHDQVLLLQKPR-----RGWWVAPGGKMEAGES----------------------ILETVKREYWEETGITVK   58 (188)
T ss_dssp             EEEEEE-ETTEEEEEECTT-----TCCEECCEEECCTTCC----------------------HHHHHHHHHHHHHSCEES
T ss_pred             EEEEEE-ECCEEEEEEeCC-----CCeEECCeecccCCCC----------------------HHHHHHHHHHHHHCCCCC
Confidence            344444 589999999853     6999999999999998                      999999999999999887


Q ss_pred             CCccceeEEeeeeeecc-------eeeeeEEEE
Q 026577          209 SLVSYSLLIRYQVVVPA-------LLLCGYMCT  234 (236)
Q Consensus       209 ~l~~~~ll~~~~~~~~~-------~~~~~~~~~  234 (236)
                      ..   .+++++....+.       ..+..|.|.
T Consensus        59 ~~---~~~~~~~~~~~~~~~~~~~~~~~~f~a~   88 (188)
T 3fk9_A           59 NP---ELKGIFSMVIFDEGKIVSEWMLFTFKAT   88 (188)
T ss_dssp             SC---EEEEEEEEEEEETTEEEEEEEEEEEEES
T ss_pred             Cc---eEEEEEEEEecCCCcceEEEEEEEEEEE
Confidence            54   345554444322       145566554

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.30  E-value=5.5e-12  Score=111.09  Aligned_cols=85  Identities=22%  Similarity=0.275  Sum_probs=65.6

Q ss_pred             cCCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHh
Q 026577          123 TASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE  202 (236)
Q Consensus       123 ~~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE  202 (236)
                      ..+...+.+++++.+++|||+||+...   +|+|.+|||++|++|+                      ++++|+||+.||
T Consensus       136 yp~~~~~viv~v~~~~~vLL~rr~~~~---~g~w~lPgG~vE~GEt----------------------~eeAa~REv~EE  190 (269)
T 1vk6_A          136 YPQIAPCIIVAIRRDDSILLAQHTRHR---NGVHTVLAGFVEVGET----------------------LEQAVAREVMEE  190 (269)
T ss_dssp             CCCCEEEEEEEEEETTEEEEEEETTTC---SSCCBCEEEECCTTCC----------------------HHHHHHHHHHHH
T ss_pred             cCCCCcEEEEEEEeCCEEEEEEecCCC---CCcEECCcCcCCCCCC----------------------HHHHHHHHHHHH
Confidence            334444444556678999999998542   6999999999999999                      999999999999


Q ss_pred             hCCCCCCCccceeEEeeeeeecceeeeeEEEEe
Q 026577          203 IGVPSESLVSYSLLIRYQVVVPALLLCGYMCTS  235 (236)
Q Consensus       203 tGl~~~~l~~~~ll~~~~~~~~~~~~~~~~~~~  235 (236)
                      ||+.+..+   .+++.+...++..++.+|.+..
T Consensus       191 tGl~v~~~---~~~~~~~~~~~~~~~~~f~a~~  220 (269)
T 1vk6_A          191 SGIKVKNL---RYVTSQPWPFPQSLMTAFMAEY  220 (269)
T ss_dssp             HCCEEEEE---EEEEEEEEETTEEEEEEEEEEE
T ss_pred             hCceeeeE---EEEEEEecCCCCEEEEEEEEEE
Confidence            99988743   4556555566777778888763

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.29  E-value=5.7e-12  Score=105.36  Aligned_cols=65  Identities=28%  Similarity=0.442  Sum_probs=51.3

Q ss_pred             eEEEEEEE--eCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          127 LGNGAVVE--TSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       127 lgv~~vl~--t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ..++++++  +.+++|||+||+..    +|.|.||||++|++|+                      +.+||+||+.||||
T Consensus        41 ~~~~~vi~~~~~~~~vLLv~r~~~----~g~W~lPgG~ve~gEt----------------------~~eaa~REl~EEtG   94 (194)
T 2fvv_A           41 KRAACLCFRSESEEEVLLVSSSRH----PDRWIVPGGGMEPEEE----------------------PSVAAVREVCEEAG   94 (194)
T ss_dssp             EEEEEEEESSTTCCEEEEEECSSC----TTSEECSEEECCTTCC----------------------HHHHHHHHHHHHHC
T ss_pred             ccEEEEEEEECCCCEEEEEEEeCC----CCcEECCCCcCCCCcC----------------------HHHHHHHHHHHHhC
Confidence            44555655  34689999998743    5899999999999998                      99999999999999


Q ss_pred             CCCCCCccceeEEeee
Q 026577          205 VPSESLVSYSLLIRYQ  220 (236)
Q Consensus       205 l~~~~l~~~~ll~~~~  220 (236)
                      +.+..+   .+++.+.
T Consensus        95 l~~~~~---~~l~~~~  107 (194)
T 2fvv_A           95 VKGTLG---RLVGIFE  107 (194)
T ss_dssp             EEEEEE---EEEEEEE
T ss_pred             Cccccc---eEEEEEE
Confidence            987643   3455444

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.29  E-value=1.9e-12  Score=103.45  Aligned_cols=55  Identities=29%  Similarity=0.610  Sum_probs=48.0

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      .+++++.+ +|++||+||+.     +|.|.||||++|++|+                      +.+||+||+.||||+.+
T Consensus         3 ~~~~vi~~-~~~vLL~~r~~-----~g~W~lPgG~ve~gEs----------------------~~~aa~REl~EEtGl~~   54 (156)
T 1k2e_A            3 VTSGVLVE-NGKVLLVKHKR-----LGVYIYPGGHVEHNET----------------------PIEAVKREFEEETGIVV   54 (156)
T ss_dssp             EEEEECEE-TTEEEEEECTT-----TCSEECSEEECCTTCC----------------------HHHHHHHHHHHHHSEEE
T ss_pred             EEEEEEEE-CCEEEEEEEcC-----CCcEECCeeecCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence            56667776 89999999874     5899999999999999                      99999999999999987


Q ss_pred             CCC
Q 026577          208 ESL  210 (236)
Q Consensus       208 ~~l  210 (236)
                      ...
T Consensus        55 ~~~   57 (156)
T 1k2e_A           55 EPI   57 (156)
T ss_dssp             EEC
T ss_pred             eec
Confidence            654

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.27  E-value=1e-11  Score=98.85  Aligned_cols=81  Identities=26%  Similarity=0.360  Sum_probs=57.2

Q ss_pred             EEEEEEEeC---CCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHH-HHHHHHHHHhh
Q 026577          128 GNGAVVETS---DKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMF-DSITREVVEEI  203 (236)
Q Consensus       128 gv~~vl~t~---dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~-~aa~REl~EEt  203 (236)
                      .+.+++...   +|++||.||... +.++|+|+||||++|++|+                      +. ++++||+.|||
T Consensus        21 ~~~~vi~~~~~~~~~vLl~~R~~~-~~~~g~w~~PgG~~e~gE~----------------------~~~~a~~REl~EE~   77 (155)
T 1x51_A           21 SATCVLEQPGALGAQILLVQRPNS-GLLAGLWEFPSVTWEPSEQ----------------------LQRKALLQELQRWA   77 (155)
T ss_dssp             EEEEEEEEECSSSEEEEEEECCCC-STTCSCEECCEEECCSSHH----------------------HHHHHHHHHHHHHS
T ss_pred             EEEEEEEecCCCCCEEEEEECCCC-CCCCceecCCccccCCCCC----------------------HHHHHHHHHHHHHh
Confidence            333455543   589999999854 6889999999999999997                      85 99999999999


Q ss_pred             C-CCCCCCccceeEEeeeeeecc--eeeeeEEEE
Q 026577          204 G-VPSESLVSYSLLIRYQVVVPA--LLLCGYMCT  234 (236)
Q Consensus       204 G-l~~~~l~~~~ll~~~~~~~~~--~~~~~~~~~  234 (236)
                      | +.+..+   ..++...+.+++  +.+..|.|+
T Consensus        78 g~l~~~~~---~~l~~~~~~~~~~~~~~~~~~~~  108 (155)
T 1x51_A           78 GPLPATHL---RHLGEVVHTFSHIKLTYQVYGLA  108 (155)
T ss_dssp             CCCCSTTC---EECCCBCCBCSSCEEEEEEEEEE
T ss_pred             CCcceeee---eecceEEEecCCccEEEEEEEEE
Confidence            9 776533   223333344443  334456654

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.27  E-value=1e-11  Score=98.28  Aligned_cols=80  Identities=28%  Similarity=0.422  Sum_probs=54.7

Q ss_pred             ceEEEEEEEeCCCe----EEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHH
Q 026577          126 PLGNGAVVETSDKK----ILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVE  201 (236)
Q Consensus       126 ~lgv~~vl~t~dg~----vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~E  201 (236)
                      ...+++++.+ +++    +|+.+|+...  ++| |.||||++|++|+                      +.+||+||+.|
T Consensus         8 ~~~~~~ii~~-~~~~~~~vLl~~r~~~~--~~g-w~lPgG~ve~gE~----------------------~~~aa~RE~~E   61 (155)
T 2b06_A            8 ILTNICLIED-LETQRVVMQYRAPENNR--WSG-YAFPGGHVENDEA----------------------FAESVIREIYE   61 (155)
T ss_dssp             EEEEEEEEEE-TTTTEEEEEEEC-------CCE-EECCCCBCCTTSC----------------------HHHHHHHHHHH
T ss_pred             EEEEEEEEEE-CCCCeEEEEEEECCCCC--CCC-EeccceecCCCCC----------------------HHHHHHHHHHH
Confidence            3456666664 666    8888888552  788 9999999999998                      99999999999


Q ss_pred             hhCCCCCCCccceeEEeeeeeec---ceeeeeEEEE
Q 026577          202 EIGVPSESLVSYSLLIRYQVVVP---ALLLCGYMCT  234 (236)
Q Consensus       202 EtGl~~~~l~~~~ll~~~~~~~~---~~~~~~~~~~  234 (236)
                      |||+.+...   .++..+....+   ......|.|.
T Consensus        62 EtGl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   94 (155)
T 2b06_A           62 ETGLTIQNP---QLVGIKNWPLDTGGRYIVICYKAT   94 (155)
T ss_dssp             HHSEEEESC---EEEEEEEEECTTSCEEEEEEEEEC
T ss_pred             HhCccccCC---cEEEEEeeccCCCceEEEEEEEEE
Confidence            999988744   34454444332   2445555553

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.27  E-value=1.6e-11  Score=106.05  Aligned_cols=84  Identities=24%  Similarity=0.312  Sum_probs=62.9

Q ss_pred             CceEEEEEEE---eCCCeEEEEEEcCCCCCCCCeEEeccccCCC--CCCCCCCCCCCCCCchhhhccchHhHHHHHHHHH
Q 026577          125 SPLGNGAVVE---TSDKKILLLQRSNNVGEFPGHFVFPGGHPEP--QDAGITSHPCGSTDSEFINHKVSQEMFDSITREV  199 (236)
Q Consensus       125 ~~lgv~~vl~---t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep--~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl  199 (236)
                      ..++|.++++   +.+++|||+||+..  .++|.|.+|||++|+  +|+                      +.+||+||+
T Consensus        21 p~v~v~~vi~~~~~~~~~vLLv~R~~~--~~~g~W~lPGG~ve~~~gEs----------------------~~~AA~REl   76 (240)
T 3gz5_A           21 QLLTVDAVLFTYHDQQLKVLLVQRSNH--PFLGLWGLPGGFIDETCDES----------------------LEQTVLRKL   76 (240)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEECCSS--SSTTCEECSEEECCTTTCSB----------------------HHHHHHHHH
T ss_pred             CccEEEEEEEEEeCCCcEEEEEECcCC--CCCCCEECCccccCCCCCcC----------------------HHHHHHHHH
Confidence            3467777776   33469999999853  568999999999999  998                      999999999


Q ss_pred             HHhhCCCCCCCccceeEEeeeeee--c--ceeeeeEEEEe
Q 026577          200 VEEIGVPSESLVSYSLLIRYQVVV--P--ALLLCGYMCTS  235 (236)
Q Consensus       200 ~EEtGl~~~~l~~~~ll~~~~~~~--~--~~~~~~~~~~~  235 (236)
                      .||||+....+   ..+..+....  |  ..+...|+|.+
T Consensus        77 ~EEtGl~~~~~---~~l~~~~~~~r~~~~~~~~~~y~a~~  113 (240)
T 3gz5_A           77 AEKTAVVPPYI---EQLCTVGNNSRDARGWSVTVCYTALM  113 (240)
T ss_dssp             HHHHSSCCSEE---EEEEEEEESSSSTTSCEEEEEEEEEC
T ss_pred             HHHHCCCCCce---eeEEEeCCCccCCCceEEEEEEEEEe
Confidence            99999988654   3445544432  2  25667777754

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.26  E-value=1.4e-11  Score=103.52  Aligned_cols=65  Identities=25%  Similarity=0.443  Sum_probs=51.1

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ..++|.+++.+ +|+|||+||+.     +|.|.||||++|++|+                      +.+||+||+.||||
T Consensus        67 ~~~~v~~vv~~-~~~vLLv~r~~-----~g~w~lPgG~ve~gEs----------------------~~~aa~REl~EEtG  118 (205)
T 3q1p_A           67 PKVDIRAVVFQ-NEKLLFVKEKS-----DGKWALPGGWADVGYT----------------------PTEVAAKEVFEETG  118 (205)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEC--------CCEECSEEECCTTCC----------------------HHHHHHHHHHHHHS
T ss_pred             CcceEEEEEEE-CCEEEEEEEcC-----CCcEECCcCccCCCCC----------------------HHHHHHHHHHHHHC
Confidence            44677777775 88999999873     5899999999999998                      99999999999999


Q ss_pred             CCCCCCccceeEEeee
Q 026577          205 VPSESLVSYSLLIRYQ  220 (236)
Q Consensus       205 l~~~~l~~~~ll~~~~  220 (236)
                      +.+...   .++..+.
T Consensus       119 l~v~~~---~~l~~~~  131 (205)
T 3q1p_A          119 YEVDHF---KLLAIFD  131 (205)
T ss_dssp             EEEEEE---EEEEEEE
T ss_pred             Cccccc---eEEEEEe
Confidence            987633   3455443

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.26  E-value=8.7e-12  Score=100.99  Aligned_cols=57  Identities=21%  Similarity=0.428  Sum_probs=50.6

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      .+|++++++.+|++||++|+.     +|.|.||||++|++|+                      +.+||+||+.||||+.
T Consensus         9 ~~v~~~i~~~~~~vLl~~r~~-----~~~w~~p~G~~e~gE~----------------------~~~aa~RE~~EE~G~~   61 (164)
T 2kdv_A            9 PNVGIVICNRQGQVMWARRFG-----QHSWQFPQGGINPGES----------------------AEQAMYRELFEEVGLS   61 (164)
T ss_dssp             EEEEEEEECTTSEEEEEEETT-----CCCEECCEEECCTTCC----------------------HHHHHHHHHHHHHCCC
T ss_pred             cEEEEEEEccCCEEEEEEEcC-----CCeEECCeeecCCCCC----------------------HHHHHHHHHHHHHCCC
Confidence            467778888899999999884     5899999999999998                      9999999999999999


Q ss_pred             CCCC
Q 026577          207 SESL  210 (236)
Q Consensus       207 ~~~l  210 (236)
                      +..+
T Consensus        62 ~~~~   65 (164)
T 2kdv_A           62 RKDV   65 (164)
T ss_dssp             GGGE
T ss_pred             ccce
Confidence            8743

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.25  E-value=7.1e-12  Score=104.44  Aligned_cols=62  Identities=35%  Similarity=0.600  Sum_probs=51.0

Q ss_pred             ccCCceEEEEEEEeC-CCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHH
Q 026577          122 HTASPLGNGAVVETS-DKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVV  200 (236)
Q Consensus       122 ~~~~~lgv~~vl~t~-dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~  200 (236)
                      +..+.++|++++++. +++|||+||..   ..+|.|.||||++|++|+                      +.+||+||++
T Consensus        22 ~~~~~v~v~~~v~~~~~~~vLL~~r~~---~~~g~w~lPGG~ve~gEs----------------------~~~aA~REl~   76 (199)
T 3h95_A           22 SMSHQVGVAGAVFDESTRKILVVQDRN---KLKNMWKFPGGLSEPEED----------------------IGDTAVREVF   76 (199)
T ss_dssp             ----CCEEEEEEEETTTTEEEEEEESS---SSTTSBBCCEEECCTTCC----------------------HHHHHHHHHH
T ss_pred             cCcccceEEEEEEeCCCCEEEEEEEcC---CCCCCEECCccccCCCCC----------------------HHHHHHHHHH
Confidence            345678887788765 48999999874   247999999999999998                      9999999999


Q ss_pred             HhhCCCCC
Q 026577          201 EEIGVPSE  208 (236)
Q Consensus       201 EEtGl~~~  208 (236)
                      ||||+.+.
T Consensus        77 EEtGl~~~   84 (199)
T 3h95_A           77 EETGIKSE   84 (199)
T ss_dssp             HHHCCCEE
T ss_pred             HHhCCccc
Confidence            99999976

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.24  E-value=1.1e-11  Score=97.06  Aligned_cols=58  Identities=28%  Similarity=0.501  Sum_probs=48.5

Q ss_pred             CceEEEEEEEeC-CCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577          125 SPLGNGAVVETS-DKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI  203 (236)
Q Consensus       125 ~~lgv~~vl~t~-dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt  203 (236)
                      ...++++++.+. +|++||+||.      +|.|.||||++|++|+                      +.++|+||+.|||
T Consensus        17 ~~~~~~~vi~~~~~~~vLl~~r~------~g~w~~PgG~ve~gE~----------------------~~~aa~RE~~EEt   68 (148)
T 2azw_A           17 TRYAAYIIVSKPENNTMVLVQAP------NGAYFLPGGEIEGTET----------------------KEEAIHREVLEEL   68 (148)
T ss_dssp             ECCEEEEECEEGGGTEEEEEECT------TSCEECSEEECCTTCC----------------------HHHHHHHHHHHHH
T ss_pred             eeeEEEEEEECCCCCeEEEEEcC------CCCEeCCCcccCCCCC----------------------HHHHHHHHHHHHh
Confidence            344666677765 6899999974      2899999999999998                      9999999999999


Q ss_pred             CCCCCCC
Q 026577          204 GVPSESL  210 (236)
Q Consensus       204 Gl~~~~l  210 (236)
                      |+.+..+
T Consensus        69 Gl~~~~~   75 (148)
T 2azw_A           69 GISVEIG   75 (148)
T ss_dssp             SEEEEEE
T ss_pred             CCeeEee
Confidence            9987643

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.24  E-value=6.6e-12  Score=98.51  Aligned_cols=55  Identities=33%  Similarity=0.506  Sum_probs=46.9

Q ss_pred             EEEEEEeCC-CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          129 NGAVVETSD-KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       129 v~~vl~t~d-g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      +++++++.+ |+|||+||+.     +|.|.||||++|++|+                      +.+||+||+.||||+.+
T Consensus         7 ~~~~i~~~~~~~vLl~~r~~-----~g~w~~PgG~ve~gEs----------------------~~~aa~RE~~EEtGl~~   59 (146)
T 2jvb_A            7 RGAAIFNENLSKILLVQGTE-----SDSWSFPRGKISKDEN----------------------DIDCCIREVKEEIGFDL   59 (146)
T ss_dssp             EEEEEBCTTSSEEEEECCSS-----SSCCBCCEECCCSSSC----------------------HHHHHHHHHHHHTSCCC
T ss_pred             EEEEEEeCCCCEEEEEEEcC-----CCcEECCcccCCCCCC----------------------HHHHHHHHHHHHHCCCc
Confidence            455666665 8999998763     4999999999999998                      99999999999999988


Q ss_pred             CCC
Q 026577          208 ESL  210 (236)
Q Consensus       208 ~~l  210 (236)
                      ..+
T Consensus        60 ~~~   62 (146)
T 2jvb_A           60 TDY   62 (146)
T ss_dssp             SSS
T ss_pred             hHh
Confidence            754

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.23  E-value=1.8e-11  Score=103.23  Aligned_cols=64  Identities=16%  Similarity=0.149  Sum_probs=51.7

Q ss_pred             CceEEEEEEEe-CCCeEEEEEEcCCCCC----CCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHH
Q 026577          125 SPLGNGAVVET-SDKKILLLQRSNNVGE----FPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREV  199 (236)
Q Consensus       125 ~~lgv~~vl~t-~dg~vLl~rRs~~~~~----~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl  199 (236)
                      ++-+|++++++ .++++||+|+.+....    .++.|+||||++|++|+                      +.+||+||+
T Consensus        56 ~~~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~----------------------~~~aA~REl  113 (209)
T 1g0s_A           56 RGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGES----------------------VEDVARREA  113 (209)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCC----------------------HHHHHHHHH
T ss_pred             CCCEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcC----------------------HHHHHHHHH
Confidence            45577778887 5789999887643211    26889999999999998                      999999999


Q ss_pred             HHhhCCCCCCC
Q 026577          200 VEEIGVPSESL  210 (236)
Q Consensus       200 ~EEtGl~~~~l  210 (236)
                      .||||+.+..+
T Consensus       114 ~EEtGl~~~~~  124 (209)
T 1g0s_A          114 IEEAGLIVKRT  124 (209)
T ss_dssp             HHHHCCCCCCE
T ss_pred             HHHcCcccCcE
Confidence            99999998754

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.22  E-value=2.1e-11  Score=102.46  Aligned_cols=64  Identities=28%  Similarity=0.474  Sum_probs=52.1

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ..++|.++++. ||+|||+||+      +|.|.||||++|++|+                      +.+||+||+.||||
T Consensus        69 ~~~~v~~vv~~-~~~vLLvrr~------~g~w~lPgG~ve~gEs----------------------~~~aa~REl~EEtG  119 (206)
T 3o8s_A           69 PKLDTRAAIFQ-EDKILLVQEN------DGLWSLPGGWCDVDQS----------------------VKDNVVKEVKEEAG  119 (206)
T ss_dssp             CEEEEEEEEEE-TTEEEEEECT------TSCEECSEEECCTTSC----------------------HHHHHHHHHHHHHC
T ss_pred             CCccEEEEEEE-CCEEEEEEec------CCeEECCeeccCCCCC----------------------HHHHHHHHHHHHHC
Confidence            44677777774 6999999987      5899999999999998                      99999999999999


Q ss_pred             CCCCCCccceeEEeee
Q 026577          205 VPSESLVSYSLLIRYQ  220 (236)
Q Consensus       205 l~~~~l~~~~ll~~~~  220 (236)
                      +.+..+   .++..+.
T Consensus       120 l~~~~~---~~l~~~~  132 (206)
T 3o8s_A          120 LDVEAQ---RVVAILD  132 (206)
T ss_dssp             EEEEEE---EEEEEEE
T ss_pred             Ccceee---eEEEEEe
Confidence            987643   3455443

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.20  E-value=1.8e-11  Score=103.56  Aligned_cols=79  Identities=20%  Similarity=0.287  Sum_probs=56.7

Q ss_pred             EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCC-CCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQD-AGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e-~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      +.+++.+.++++|+.||      ++|+|.||||++|++| +                      +.+||+||+.||||+.+
T Consensus        47 vv~~i~~~~~~vLl~~r------~~g~w~~PGG~ve~gE~t----------------------~~~aa~REl~EEtGl~~   98 (212)
T 1u20_A           47 KLFDRVPIRRVLLMMMR------FDGRLGFPGGFVDTRDIS----------------------LEEGLKRELEEELGPAL   98 (212)
T ss_dssp             EETTTEECCEEEEEEEE------TTSCEECSEEEECTTTSC----------------------HHHHHHHHHHHHHCGGG
T ss_pred             EEEEEEecCCEEEEEEe------CCCeEECCCcccCCCCCC----------------------HHHHHHHHHHHHHCCCc
Confidence            33445567789999988      3699999999999999 8                      99999999999999988


Q ss_pred             CCCc--cceeEEeeeeeec-ceeeeeEEEEe
Q 026577          208 ESLV--SYSLLIRYQVVVP-ALLLCGYMCTS  235 (236)
Q Consensus       208 ~~l~--~~~ll~~~~~~~~-~~~~~~~~~~~  235 (236)
                      ..+.  ....+......++ ......|.|..
T Consensus        99 ~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~  129 (212)
T 1u20_A           99 ATVEVTEDDYRSSQVREHPQKCVTHFYIKEL  129 (212)
T ss_dssp             GGCCCCGGGEEEEEEECTTSCEEEEEEEEEC
T ss_pred             cccceeeeeEEEeccccCCCcEEEEEEEEEe
Confidence            7543  1112333333343 45566676654

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.19  E-value=9.5e-11  Score=101.07  Aligned_cols=65  Identities=26%  Similarity=0.397  Sum_probs=53.5

Q ss_pred             ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEec-cccCCCC------CCCCCCCCCCCCCchhhhccchHhHHHHHHHH
Q 026577          126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQ------DAGITSHPCGSTDSEFINHKVSQEMFDSITRE  198 (236)
Q Consensus       126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fP-GG~~Ep~------e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~RE  198 (236)
                      ..++++++++++|++||.||+..+..+||+|++| |||++++      |+.                   ..+.+||+||
T Consensus        59 h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~-------------------~~~~~Aa~RE  119 (235)
T 2dho_A           59 HRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDA-------------------LGVRRAAQRR  119 (235)
T ss_dssp             EEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGG-------------------HHHHHHHHHH
T ss_pred             EEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccc-------------------hhHHHHHHHH
Confidence            3467778888899999999998777899999999 5999998      430                   0148999999


Q ss_pred             HHHhhCCCCCC
Q 026577          199 VVEEIGVPSES  209 (236)
Q Consensus       199 l~EEtGl~~~~  209 (236)
                      +.|||||....
T Consensus       120 l~EElGi~~~~  130 (235)
T 2dho_A          120 LKAELGIPLEE  130 (235)
T ss_dssp             HHHHHCCCGGG
T ss_pred             HHHHHCCCccc
Confidence            99999998763

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.17  E-value=1.3e-10  Score=102.00  Aligned_cols=86  Identities=26%  Similarity=0.369  Sum_probs=60.1

Q ss_pred             CceEEEEEEEeC-----CCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHH
Q 026577          125 SPLGNGAVVETS-----DKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREV  199 (236)
Q Consensus       125 ~~lgv~~vl~t~-----dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl  199 (236)
                      ..++|.++++.-     +++|||++|...  .++|.|.+|||++|++|+                      +.+||+||+
T Consensus        38 p~v~v~~vv~~~~~~~~~~~VLLv~R~~~--p~~g~W~lPGG~ve~gEs----------------------~~~AA~REl   93 (273)
T 2fml_A           38 PSLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRNES----------------------TEDSVLRET   93 (273)
T ss_dssp             CEEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECCEEECCTTSC----------------------HHHHHHHHH
T ss_pred             CceEEEEEEEEEcCCCCCcEEEEEEccCC--CCCCcEECCccCCCCCcC----------------------HHHHHHHHH
Confidence            346677666642     348999999865  567999999999999998                      999999999


Q ss_pred             HHhhCCCCCCCccceeEEeeeeee--c--ceeeeeEEEEe
Q 026577          200 VEEIGVPSESLVSYSLLIRYQVVV--P--ALLLCGYMCTS  235 (236)
Q Consensus       200 ~EEtGl~~~~l~~~~ll~~~~~~~--~--~~~~~~~~~~~  235 (236)
                      .||||+.+... ....+..|....  |  ......|+|.+
T Consensus        94 ~EEtGl~v~~~-~l~~l~~~~~~~r~~~~~~~~~~y~a~~  132 (273)
T 2fml_A           94 KEETGVVISQE-NIEQLHSFSRPDRDPRGWVVTVSYLAFI  132 (273)
T ss_dssp             HHHHCCCCCGG-GEEEEEEECCTTSSTTSSEEEEEEEEEC
T ss_pred             HHHHCCCCCcC-cEEEEEEEcCCCCCCCceEEEEEEEEEe
Confidence            99999876532 122233332211  1  24556777754

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.17  E-value=1.1e-10  Score=101.36  Aligned_cols=64  Identities=27%  Similarity=0.406  Sum_probs=53.1

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEecc-ccCCCC------CCCCCCCCCCCCCchhhhccchHhHHHHHHHHH
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPG-GHPEPQ------DAGITSHPCGSTDSEFINHKVSQEMFDSITREV  199 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPG-G~~Ep~------e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl  199 (236)
                      .++.+++++++|++||.||+..+..+||+|++|+ ||++++      |+.                   ..+.+||+||+
T Consensus        71 ~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~-------------------~~~~eAA~REl  131 (246)
T 2pny_A           71 RAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDA-------------------IGVRRAAQRRL  131 (246)
T ss_dssp             EEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGG-------------------HHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccc-------------------hhHHHHHHHHH
Confidence            4677788888999999999987778999999995 999998      540                   00389999999


Q ss_pred             HHhhCCCCCC
Q 026577          200 VEEIGVPSES  209 (236)
Q Consensus       200 ~EEtGl~~~~  209 (236)
                      .|||||....
T Consensus       132 ~EElGi~~~~  141 (246)
T 2pny_A          132 QAELGIPGEQ  141 (246)
T ss_dssp             HHHHCCCTTT
T ss_pred             HHHHCCCccc
Confidence            9999999764

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.17  E-value=8.6e-11  Score=103.36  Aligned_cols=60  Identities=23%  Similarity=0.321  Sum_probs=50.2

Q ss_pred             ceEEEEEEEeC-CCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          126 PLGNGAVVETS-DKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       126 ~lgv~~vl~t~-dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      ...+++++++. +|+|||+||...    +|.|.||||++|++|+                      +.+||+||+.||||
T Consensus       101 v~~v~avv~~~~~~~vLLv~r~~~----~g~W~lPgG~ve~gEs----------------------~~eAA~REl~EEtG  154 (271)
T 2a6t_A          101 IPVRGAIMLDMSMQQCVLVKGWKA----SSGWGFPKGKIDKDES----------------------DVDCAIREVYEETG  154 (271)
T ss_dssp             CCEEEEEEBCSSSSEEEEEEESST----TCCCBCSEEECCTTCC----------------------HHHHHHHHHHHHHC
T ss_pred             CCeEEEEEEECCCCEEEEEEEeCC----CCeEECCcccCCCCcC----------------------HHHHHHHHHHHHhC
Confidence            34556666665 489999999743    5899999999999999                      99999999999999


Q ss_pred             CCCCCCc
Q 026577          205 VPSESLV  211 (236)
Q Consensus       205 l~~~~l~  211 (236)
                      +.+..+.
T Consensus       155 l~~~~l~  161 (271)
T 2a6t_A          155 FDCSSRI  161 (271)
T ss_dssp             CCCTTTC
T ss_pred             CCceeee
Confidence            9988643

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.16  E-value=7.9e-11  Score=97.76  Aligned_cols=63  Identities=17%  Similarity=0.197  Sum_probs=50.0

Q ss_pred             CceEEEEEEEeC-CCeEEEEEEcCCC----CC-CCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHH
Q 026577          125 SPLGNGAVVETS-DKKILLLQRSNNV----GE-FPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITRE  198 (236)
Q Consensus       125 ~~lgv~~vl~t~-dg~vLl~rRs~~~----~~-~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~RE  198 (236)
                      ++-+|++++++. ++++||+|+.+..    +. .++.|.||||++| +|+                      +.+||+||
T Consensus        44 ~~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~----------------------~~~aa~RE  100 (191)
T 3o6z_A           44 RGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDE----------------------PEVCIRKE  100 (191)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSC----------------------HHHHHHHH
T ss_pred             cCCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCC----------------------HHHHHHHH
Confidence            445677777775 5899999887421    11 6789999999999 998                      99999999


Q ss_pred             HHHhhCCCCCCC
Q 026577          199 VVEEIGVPSESL  210 (236)
Q Consensus       199 l~EEtGl~~~~l  210 (236)
                      +.||||+.+..+
T Consensus       101 l~EEtG~~~~~~  112 (191)
T 3o6z_A          101 AIEETGYEVGEV  112 (191)
T ss_dssp             HHHHC-CCCSCE
T ss_pred             HHHHhCCccCcE
Confidence            999999998654

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.14  E-value=1.1e-10  Score=104.62  Aligned_cols=58  Identities=26%  Similarity=0.404  Sum_probs=50.1

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      .+|++++. .+|+|||+||...  ..+|+|.||||++|++|+                      +.+||+||+.||||+.
T Consensus       209 ~~v~~vv~-~~~~vLL~~r~~~--~~~g~w~lPgG~ve~gEt----------------------~~~aa~REl~EEtGl~  263 (352)
T 2qjt_B          209 VTVDALVI-VNDHILMVQRKAH--PGKDLWALPGGFLECDET----------------------IAQAIIRELFEETNIN  263 (352)
T ss_dssp             EEEEEEEE-ETTEEEEEEESSS--SSTTCEECSEEECCTTSC----------------------HHHHHHHHHHHHHCCS
T ss_pred             eEEEEEEE-ECCEEEEEEEcCC--CCCCeEECCCCcCCCCCC----------------------HHHHHHHHHHHhhCCC
Confidence            45666666 6899999999865  357999999999999998                      9999999999999999


Q ss_pred             CCC
Q 026577          207 SES  209 (236)
Q Consensus       207 ~~~  209 (236)
                      +..
T Consensus       264 v~~  266 (352)
T 2qjt_B          264 LTH  266 (352)
T ss_dssp             CCH
T ss_pred             ccc
Confidence            873

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.13  E-value=8.5e-11  Score=99.01  Aligned_cols=49  Identities=20%  Similarity=0.192  Sum_probs=41.5

Q ss_pred             CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCC
Q 026577          138 KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSES  209 (236)
Q Consensus       138 g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~  209 (236)
                      +++||+++.+. ...++.|.||||++|++|+                      +.+||+||+.||||+.+..
T Consensus        77 ~~vlLv~q~R~-~~~~~~welPgG~ve~gEs----------------------~~~aA~REl~EEtGl~~~~  125 (212)
T 2dsc_A           77 ECIVLVKQFRP-PMGGYCIEFPAGLIDDGET----------------------PEAAALRELEEETGYKGDI  125 (212)
T ss_dssp             CEEEEEEEEEG-GGTEEEEECCEEECCTTCC----------------------HHHHHHHHHHHHHCCCCEE
T ss_pred             cEEEEEEeecC-CCCCcEEECCccccCCCCC----------------------HHHHHHHHHHHHhCCCccc
Confidence            48999886533 2456899999999999998                      9999999999999998764

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.12  E-value=9.7e-11  Score=104.32  Aligned_cols=58  Identities=22%  Similarity=0.399  Sum_probs=50.2

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      .+|++++. .+|++||+||+..  ..+|+|.||||++|++|+                      +.+||+||+.||||+.
T Consensus       204 ~~v~~vi~-~~~~vLL~~r~~~--~~~g~w~lPgG~ve~gE~----------------------~~~aa~REl~EEtGl~  258 (341)
T 2qjo_A          204 ITTDAVVV-QAGHVLMVRRQAK--PGLGLIALPGGFIKQNET----------------------LVEGMLRELKEETRLK  258 (341)
T ss_dssp             EEEEEEEE-ETTEEEEEECCSS--SSTTCEECSEEECCTTSC----------------------HHHHHHHHHHHHHCCS
T ss_pred             eEEEEEEE-eCCEEEEEEecCC--CCCCeEECCCCcCCCCCC----------------------HHHHHHHHHhhhhCCc
Confidence            56666666 6899999999854  458999999999999998                      9999999999999999


Q ss_pred             CCC
Q 026577          207 SES  209 (236)
Q Consensus       207 ~~~  209 (236)
                      +..
T Consensus       259 ~~~  261 (341)
T 2qjo_A          259 VPL  261 (341)
T ss_dssp             SCH
T ss_pred             ccc
Confidence            874

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.10  E-value=6.1e-11  Score=102.36  Aligned_cols=68  Identities=26%  Similarity=0.483  Sum_probs=46.7

Q ss_pred             eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          139 KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       139 ~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      +|||+||+.+..+++|.|+||||++|++|.....+..+...  .-.......+..||+||++|||||.+.
T Consensus        25 ~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~--~~~~~~~~a~~~aAiRE~~EE~Gl~l~   92 (232)
T 3qsj_A           25 EVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPV--CAEDDDDPALAVTALRETAEEIGWLLA   92 (232)
T ss_dssp             EEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCB--TCCSTTHHHHHHHHHHHHHHHHSCCCS
T ss_pred             EEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhccccc--ccccchhhHHHHHHHHHHHHHhCceec
Confidence            89999999888889999999999999988620000000000  000011233789999999999999765

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.09  E-value=2.1e-10  Score=97.93  Aligned_cols=62  Identities=11%  Similarity=0.091  Sum_probs=49.9

Q ss_pred             cCCceEEEEEEEe-CCCeEEEEEEcCCCCCC-------------------------------CCeEEeccccCCC-CCCC
Q 026577          123 TASPLGNGAVVET-SDKKILLLQRSNNVGEF-------------------------------PGHFVFPGGHPEP-QDAG  169 (236)
Q Consensus       123 ~~~~lgv~~vl~t-~dg~vLl~rRs~~~~~~-------------------------------~G~~~fPGG~~Ep-~e~~  169 (236)
                      ..++-+|++++++ .++++||+|+.+. +.+                               ++.|+||||++|+ +|+ 
T Consensus        33 v~~~~aV~vl~~~~~~~~vlLvrQ~R~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs-  110 (218)
T 3q91_A           33 MKTHDSVTVLLFNSSRRSLVLVKQFRP-AVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLS-  110 (218)
T ss_dssp             --CCCEEEEEEEEGGGTEEEEEEEECH-HHHHHHTC-------------------------CCEEEECEEEECCSSSCC-
T ss_pred             EEcCCeEEEEEEECCCCEEEEEEcccc-ccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCC-
Confidence            3455678888887 4689999987642 122                               6899999999999 998 


Q ss_pred             CCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          170 ITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                                           +.+||+||+.||||+.+
T Consensus       111 ---------------------~~eaA~REl~EEtGl~~  127 (218)
T 3q91_A          111 ---------------------LEEVACKEAWEECGYHL  127 (218)
T ss_dssp             ---------------------HHHHHHHHHHHHHCBCC
T ss_pred             ---------------------HHHHHHHHHHHHhCCcc
Confidence                                 99999999999999998

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.09  E-value=8.7e-11  Score=100.14  Aligned_cols=72  Identities=22%  Similarity=0.358  Sum_probs=45.7

Q ss_pred             EEEEeCCCeEEEEEEcCCCCC--CCCeEEe-ccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          131 AVVETSDKKILLLQRSNNVGE--FPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       131 ~vl~t~dg~vLl~rRs~~~~~--~~G~~~f-PGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      .+++..+|++|+.+|....+.  .+|.|.| ||||+|++|+..                ....+.+||+||+.|||||.+
T Consensus        72 ~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~----------------p~EtleeAa~REl~EEtGl~v  135 (211)
T 3e57_A           72 YVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGAT----------------PREAFLKGLEREVNEEVDVSL  135 (211)
T ss_dssp             EEEEEETTEEEEEEC------------CBSSEECCCBGGGCSS----------------HHHHHHHHHHHHHHHHEEEEE
T ss_pred             EEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCC----------------chhhHHHHHHHHHHHHhCCee
Confidence            344446899999999865432  6789998 999999999610                000168999999999999965


Q ss_pred             CCCccceeEEeeee
Q 026577          208 ESLVSYSLLIRYQV  221 (236)
Q Consensus       208 ~~l~~~~ll~~~~~  221 (236)
                      .   ...+++++..
T Consensus       136 ~---~~~~ig~~~~  146 (211)
T 3e57_A          136 R---ELEFLGLINS  146 (211)
T ss_dssp             E---EEEEEEEEEC
T ss_pred             e---ccEEEEEEec
Confidence            4   3456666544

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.02  E-value=5.2e-10  Score=99.98  Aligned_cols=63  Identities=16%  Similarity=0.203  Sum_probs=55.2

Q ss_pred             ceEEEEEEEeCCC---eEEEEEEcCCCCCCCCeEE-eccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHH
Q 026577          126 PLGNGAVVETSDK---KILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVE  201 (236)
Q Consensus       126 ~lgv~~vl~t~dg---~vLl~rRs~~~~~~~G~~~-fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~E  201 (236)
                      ..+|-+.+.+.++   ++++.||+..+..+||+|+ ++|||++++|+                      +.+||+||+.|
T Consensus       118 ~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs----------------------~~eaA~REl~E  175 (300)
T 3dup_A          118 AYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLS----------------------LRQNLIKECAE  175 (300)
T ss_dssp             EEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSC----------------------HHHHHHHHHHH
T ss_pred             EEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCC----------------------HHHHHHHHHHH
Confidence            3466667777777   9999999999999999995 89999999998                      99999999999


Q ss_pred             hhCCCCCCC
Q 026577          202 EIGVPSESL  210 (236)
Q Consensus       202 EtGl~~~~l  210 (236)
                      |+||+...+
T Consensus       176 ElGI~~~~~  184 (300)
T 3dup_A          176 EADLPEALA  184 (300)
T ss_dssp             HHCCCHHHH
T ss_pred             HhCCChhhh
Confidence            999987543

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=98.98  E-value=1.2e-09  Score=99.10  Aligned_cols=49  Identities=20%  Similarity=0.369  Sum_probs=42.4

Q ss_pred             eCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          135 TSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       135 t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      +.+.+|||++|...     |.|.||||++|++|+                      +.+||+||+.||||+.+...
T Consensus        35 ~~~~~vLLv~r~~~-----g~W~lPgG~ve~gEs----------------------~~~AA~REl~EEtGl~~~~~   83 (364)
T 3fjy_A           35 LDSIEVCIVHRPKY-----DDWSWPKGKLEQNET----------------------HRHAAVREIGEETGSPVKLG   83 (364)
T ss_dssp             HTTEEEEEEEETTT-----TEEECCEEECCTTCC----------------------HHHHHHHHHHHHHSCCEEEE
T ss_pred             CCceEEEEEEcCCC-----CCEECCcCCCCCCCC----------------------HHHHHHHHHHHHhCCeeeec
Confidence            34458999999633     999999999999999                      99999999999999987643

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=98.94  E-value=1.2e-09  Score=92.97  Aligned_cols=70  Identities=26%  Similarity=0.336  Sum_probs=48.1

Q ss_pred             CeEEEEEEcCCCCCCCCeEEeccccCCCCC-CCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCC--Cccce
Q 026577          138 KKILLLQRSNNVGEFPGHFVFPGGHPEPQD-AGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSES--LVSYS  214 (236)
Q Consensus       138 g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e-~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~--l~~~~  214 (236)
                      +++|+++|.      +|.|+||||++|++| +                      +.+||+||+.||||+.+..  +....
T Consensus        65 ~~~ll~~r~------~g~w~lPGG~ve~gE~t----------------------~~eaa~REl~EEtGl~~~~~~l~~l~  116 (217)
T 2xsq_A           65 YAILMQMRF------DGRLGFPGGFVDTQDRS----------------------LEDGLNRELREELGEAAAAFRVERTD  116 (217)
T ss_dssp             EEEEEEEET------TSCEECSEEECCTTCSS----------------------HHHHHHHHHHHHHCGGGGGCCCCGGG
T ss_pred             CcEEEEEcc------CCeEECCceecCCCCCC----------------------HHHHHHHHHHHHHCCCCccceeEEEE
Confidence            356666664      589999999999999 8                      9999999999999998873  22211


Q ss_pred             eEEeeeeeecceeeeeEEEEe
Q 026577          215 LLIRYQVVVPALLLCGYMCTS  235 (236)
Q Consensus       215 ll~~~~~~~~~~~~~~~~~~~  235 (236)
                      .+.......+......|.|..
T Consensus       117 ~~~~~~~~~~~~~~~~f~~~l  137 (217)
T 2xsq_A          117 YRSSHVGSGPRVVAHFYAKRL  137 (217)
T ss_dssp             EEEEEECSSSSEEEEEEEEEC
T ss_pred             EEeecCCCCCeEEEEEEEEEe
Confidence            122212222345566677654

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.71  E-value=1.3e-08  Score=85.60  Aligned_cols=58  Identities=21%  Similarity=0.251  Sum_probs=41.9

Q ss_pred             CeEEeccccCCCCC-CCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC-CCCCCccceeEEeeeeeec-ceeeee
Q 026577          154 GHFVFPGGHPEPQD-AGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV-PSESLVSYSLLIRYQVVVP-ALLLCG  230 (236)
Q Consensus       154 G~~~fPGG~~Ep~e-~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl-~~~~l~~~~ll~~~~~~~~-~~~~~~  230 (236)
                      |+|+||||++|++| +                      +++++.||+.||+|+ .+.. ..  .+......+| .+.+..
T Consensus        54 G~weFPGGkVe~gE~t----------------------~e~aL~REl~EElg~~~V~~-~~--y~~s~~~~yp~~V~LHf  108 (214)
T 3kvh_A           54 GLLGFPGGFVDRRFWS----------------------LEDGLNRVLGLGLGCLRLTE-AD--YLSSHLTEGPHRVVAHL  108 (214)
T ss_dssp             SCEECSEEEECTTTCC----------------------HHHHHHHSCCSCC---CCCG-GG--EEEEEEC----CEEEEE
T ss_pred             CEEeCCCccCCCCCCC----------------------HHHHHHHHHHHhhCCeeeee-ee--eEEEEeccCCCEEEEEE
Confidence            99999999999999 7                      999999999999997 3432 22  2333334455 688999


Q ss_pred             EEEEeC
Q 026577          231 YMCTST  236 (236)
Q Consensus       231 ~~~~~~  236 (236)
                      |.|+.+
T Consensus       109 Y~crl~  114 (214)
T 3kvh_A          109 YARQLT  114 (214)
T ss_dssp             EEEECC
T ss_pred             EEEEee
Confidence            999864

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=98.70  E-value=2e-08  Score=89.12  Aligned_cols=42  Identities=24%  Similarity=0.482  Sum_probs=38.3

Q ss_pred             eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          139 KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       139 ~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      +|||++|...     |.|.+|||++|++|+                      +.+||+||+.||||+.+
T Consensus       140 ~vLl~~r~~~-----g~W~lPGG~Ve~GEs----------------------~~eAA~REl~EETGl~~  181 (292)
T 1q33_A          140 QFVAIKRKDC-----GEWAIPGGMVDPGEK----------------------ISATLKREFGEEALNSL  181 (292)
T ss_dssp             EEEEEECTTT-----CSEECCCEECCTTCC----------------------HHHHHHHHHHHHHSCGG
T ss_pred             EEEEEEecCC-----CcEeCCCcccCCCCC----------------------HHHHHHHHHHHHhCCcc
Confidence            6999998743     899999999999999                      99999999999999973

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.33  E-value=1.7e-06  Score=73.19  Aligned_cols=55  Identities=24%  Similarity=0.401  Sum_probs=44.1

Q ss_pred             CCceEEEEEEEe-CCC--eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHH
Q 026577          124 ASPLGNGAVVET-SDK--KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVV  200 (236)
Q Consensus       124 ~~~lgv~~vl~t-~dg--~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~  200 (236)
                      .....|.++++. .++  +||++|+. .     +.|.+|||++|++|+                      ..++++||+.
T Consensus        56 g~R~sV~avil~~~~~~phVLLlq~~-~-----~~f~LPGGkle~gE~----------------------~~eaL~REL~  107 (208)
T 3bho_A           56 GMRRTVEGVLIVHEHRLPHVLLLQLG-T-----TFFKLPGGELNPGED----------------------EVEGLKRLMT  107 (208)
T ss_dssp             CSEEEEEEEEEEEETTEEEEEEEEEE-T-----TEEECSEEECCTTCC----------------------HHHHHHHHHH
T ss_pred             CCceEEEEEEEEcCCCCcEEEEEEcC-C-----CcEECCCcccCCCCC----------------------HHHHHHHHHH
Confidence            345566666654 334  69999985 2     589999999999999                      8999999999


Q ss_pred             HhhCCC
Q 026577          201 EEIGVP  206 (236)
Q Consensus       201 EEtGl~  206 (236)
                      ||+|+.
T Consensus       108 EELg~~  113 (208)
T 3bho_A          108 EILGRQ  113 (208)
T ss_dssp             HHHCCC
T ss_pred             HHhCCC
Confidence            999973

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=98.25  E-value=1.3e-06  Score=78.59  Aligned_cols=75  Identities=19%  Similarity=0.191  Sum_probs=52.6

Q ss_pred             CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh-
Q 026577          125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI-  203 (236)
Q Consensus       125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt-  203 (236)
                      ..+.|++++. .||+|||+  . .    .| |.+|||+++.++.                        .+++||++||+ 
T Consensus       182 p~~~vgaii~-~~g~vLL~--~-~----~G-W~LPG~~~~~~~~------------------------~~a~RE~~EEtt  228 (321)
T 3rh7_A          182 GEIRLGAVLE-QQGAVFLA--G-N----ET-LSLPNCTVEGGDP------------------------ARTLAAYLEQLT  228 (321)
T ss_dssp             SCEEEEEEEE-SSSCEEEB--C-S----SE-EBCCEEEESSSCH------------------------HHHHHHHHHHHH
T ss_pred             CcceEEEEEE-ECCEEEEe--e-C----CC-ccCCcccCCCChh------------------------HHHHHHHHHHhc
Confidence            3456665555 68999999  2 2    38 9999997766554                        58999999997 


Q ss_pred             CCCCCCCccceeEEeeeeeecceeeeeEEEEe
Q 026577          204 GVPSESLVSYSLLIRYQVVVPALLLCGYMCTS  235 (236)
Q Consensus       204 Gl~~~~l~~~~ll~~~~~~~~~~~~~~~~~~~  235 (236)
                      |+.++.   ..|+++|++..-+..-.-|.|+.
T Consensus       229 Gl~v~~---~~L~~v~~~~~~~~~~i~f~~~~  257 (321)
T 3rh7_A          229 GLNVTI---GFLYSVYEDKSDGRQNIVYHALA  257 (321)
T ss_dssp             SSCEEE---EEEEEEEECTTTCCEEEEEEEEE
T ss_pred             CCEEee---ceEEEEEEcCCCceEEEEEEEEe
Confidence            999984   35777887644333344666653

>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2

Probab=91.42  E-value=0.0018  Score=54.90  Aligned_cols=89  Identities=8%  Similarity=0.050  Sum_probs=57.4

Q ss_pred             ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHh--hCCCcccCceEEEeeeEEecCCCCCCcceEEEecC
Q 026577           13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQ--INKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLG   90 (236)
Q Consensus        13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~--~~p~lfng~kfrl~~~~~~~~~~~~~~~~~~l~lg   90 (236)
                      |...||||+.|++++++.+|++ |.+.  ++.+|.++..+...  ..+.-...+.+.-......+.+...+.+++.+.+|
T Consensus       117 L~~lpGIG~~TA~~il~~~~~~-~~~~--vD~~v~Rv~~rl~gl~~~~~~~~~~~l~~~ae~~~P~~~~~~~~~~lv~~G  193 (221)
T 1kea_A          117 ILDLPGVGKYTCAAVMCLAFGK-KAAM--VDANFVRVINRYFGGSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFS  193 (221)
T ss_dssp             HHTSTTCCHHHHHHHHHHTTCC-CCCC--CCHHHHHHHHHHHCGGGTTCCTTSHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHhCCCCcHHHHHHHHHHhcCC-Ccce--ecHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            3367999999999999999999 6543  78999998875422  22211111111111111122233455688889999


Q ss_pred             CcccceeeccCCChhhhhh
Q 026577           91 LTDYRTFVGTNLNPLWEKF  109 (236)
Q Consensus        91 ~T~Yr~fv~t~~~p~~~~~  109 (236)
                      .+     +|+..+|.|..|
T Consensus       194 ~~-----~C~~~~P~C~~C  207 (221)
T 1kea_A          194 AI-----ICAPRKPKCEKC  207 (221)
T ss_dssp             HH-----TSCSSSCCGGGC
T ss_pred             HH-----HcCCCCCCCCCC
Confidence            98     999999998765

>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}

Probab=89.73  E-value=0.0019  Score=57.07  Aligned_cols=89  Identities=11%  Similarity=0.085  Sum_probs=58.8

Q ss_pred             ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhCC-CcccC--ceEEEeeeEEecCCCCCCcceEEEec
Q 026577           13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINK-SLFNG--QKFRYGGHIMRGEGGSSVESHVCLHL   89 (236)
Q Consensus        13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~p-~lfng--~kfrl~~~~~~~~~~~~~~~~~~l~l   89 (236)
                      ++..+|||++|++++++.+|++ |.+.  ++.+|.|+..+.---.. .-...  ..++.....+.+.+..++.+++.|.+
T Consensus       131 l~~LpGIG~kTA~~iL~~a~g~-p~~~--VDt~V~Rv~~Rlg~i~~~~~~~~~~~~l~~~a~~~lp~~~~~~~h~~L~~~  207 (287)
T 3n5n_X          131 QQLLPGVGRYTAGAIASIAFGQ-ATGV--VDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMEL  207 (287)
T ss_dssp             HHHSTTCCHHHHHHHHHHHSCC-CCCC--CCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHhcCC-CCcc--ccHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4337999999999999999999 6543  89999999875532111 00110  01111011122334455678899999


Q ss_pred             CCcccceeeccCCChhhhhh
Q 026577           90 GLTDYRTFVGTNLNPLWEKF  109 (236)
Q Consensus        90 g~T~Yr~fv~t~~~p~~~~~  109 (236)
                      |.+     +|+..+|.|..|
T Consensus       208 Gr~-----iC~~r~P~C~~C  222 (287)
T 3n5n_X          208 GAT-----VCTPQRPLCSQC  222 (287)
T ss_dssp             HHH-----TSCSSSCCTTSC
T ss_pred             hHH-----HcCCCCCCCCCC
Confidence            999     999999998765

>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A

Probab=85.18  E-value=0.0028  Score=53.74  Aligned_cols=90  Identities=12%  Similarity=0.083  Sum_probs=57.2

Q ss_pred             ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHh--hCCCc-ccCceEEEeeeEEecCCCCCCcceEEEec
Q 026577           13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQ--INKSL-FNGQKFRYGGHIMRGEGGSSVESHVCLHL   89 (236)
Q Consensus        13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~--~~p~l-fng~kfrl~~~~~~~~~~~~~~~~~~l~l   89 (236)
                      |...||||+.|++++++.+|++ |.+  .+|.+|.++..+...  ..+.. -.-..++-......+.+...+.+++.|.+
T Consensus       111 L~~lpGIG~~TA~~il~~a~~~-~~~--~vD~~v~Rv~~rl~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~lv~~  187 (225)
T 1kg2_A          111 VAALPGVGRSTAGAILSLSLGK-HFP--ILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDL  187 (225)
T ss_dssp             HHTSTTCCHHHHHHHHHHHHCC-SCC--CCCHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHCCSTTHHHHHHHHHHH
T ss_pred             HhcCCCCcHHHHHHHHHHhCCC-Ccc--eeCHHHHHHHHHHcCCCCCCCccchHHHHHHHHHHHCCcccHHHHHHHHHHH
Confidence            3467999999999999999999 654  389999999875522  11100 00000111011122223345567888999


Q ss_pred             CCcccceeeccCCChhhhhhc
Q 026577           90 GLTDYRTFVGTNLNPLWEKFL  110 (236)
Q Consensus        90 g~T~Yr~fv~t~~~p~~~~~~  110 (236)
                      |.+     +|+..+|.|..|.
T Consensus       188 G~~-----~C~~~~P~C~~Cp  203 (225)
T 1kg2_A          188 GAM-----ICTRSKPKCSLCP  203 (225)
T ss_dssp             HHH-----TSCSSSCCGGGCT
T ss_pred             HHH-----HcCCCCCCCCCCC
Confidence            999     9999999987653

>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1

Probab=84.88  E-value=0.0039  Score=52.26  Aligned_cols=86  Identities=12%  Similarity=0.056  Sum_probs=55.0

Q ss_pred             cCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhCCCcccCceEEEeeeEEecCCCCCCcceEEEecCCcc
Q 026577           14 SCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTD   93 (236)
Q Consensus        14 ~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~p~lfng~kfrl~~~~~~~~~~~~~~~~~~l~lg~T~   93 (236)
                      ...||||+.++++++..+|++ |...  ++.+|.++..+ +--.+. -+-..+.-......+.+..+..+++.+.+|.+ 
T Consensus       112 ~~l~GIG~~tA~~il~~~~~~-~~~~--vD~~v~Rv~~r-lgl~~~-~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~-  185 (211)
T 2abk_A          112 EALPGVGRKTANVVLNTAFGW-PTIA--VDTHIFRVCNR-TQFAPG-KNVEQVEEKLLKVVPAEFKVDCHHWLILHGRY-  185 (211)
T ss_dssp             HHSTTCCHHHHHHHHHHHHCC-CCCC--CCHHHHHHHHH-HCSSCC-SSHHHHHHHHHHHSCGGGTTTHHHHHHHHHHH-
T ss_pred             HhCCCCChHHHHHHHHHHCCC-CcCC--cCHHHHHHHHH-hCCCCC-CCHHHHHHHHHHhcChhhHHHHHHHHHHHHHH-
Confidence            356999999999999999998 5433  78899888653 321110 00011111111112223455678888888988 


Q ss_pred             cceeeccCCChhhhhh
Q 026577           94 YRTFVGTNLNPLWEKF  109 (236)
Q Consensus        94 Yr~fv~t~~~p~~~~~  109 (236)
                          +|+..+|.|..|
T Consensus       186 ----~C~~~~P~C~~C  197 (211)
T 2abk_A          186 ----TCIARKPRCGSC  197 (211)
T ss_dssp             ----TSCSSSCCGGGC
T ss_pred             ----HCCCCCCCCCCC
Confidence                999999988765

>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A

Probab=83.17  E-value=0.18  Score=40.61  Aligned_cols=40  Identities=8%  Similarity=-0.100  Sum_probs=30.2

Q ss_pred             cCCCCCCCceeEEEeccCCCC-CCCCCCchhhHHHHHHHHHHh
Q 026577           14 SCPHGFSPSEVSVVFDESYDR-VPHPDNNLENSISEIWDSRVQ   55 (236)
Q Consensus        14 ~~~~g~~~~~v~v~~s~~f~r-~p~p~~~~e~~I~~~W~~~~~   55 (236)
                      ..+||+|+||++++.+.+||+ ++.+.  ++.++.+.|+....
T Consensus       107 ~~LpGVG~yTAdav~~F~~~e~~~V~p--~D~~l~r~l~wl~~  147 (161)
T 4e9f_A          107 IELHGIGKYGNDSYRIFCVNEWKQVHP--EDHKLNKYHDWLWE  147 (161)
T ss_dssp             GGSTTCCHHHHHHHHHHTSSCGGGCCC--CSHHHHHHHHHHHH
T ss_pred             hcCCCchHHHHHHHHHHHCCCCCCCCC--CcHHHHHHHHHHHc
Confidence            367999999999999999995 23222  67888888775544

>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*

Probab=80.34  E-value=0.0066  Score=51.58  Aligned_cols=88  Identities=10%  Similarity=0.035  Sum_probs=53.8

Q ss_pred             ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhCCCcccCceEEEeeeEEecCCCCCCcceEEEecCCc
Q 026577           13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLT   92 (236)
Q Consensus        13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~p~lfng~kfrl~~~~~~~~~~~~~~~~~~l~lg~T   92 (236)
                      |...||||+.|+++++..+|++ |...  ++.+|.++..+. --.+.--+-..+.-......+.+...+.++..+.+|.+
T Consensus       115 L~~lpGIG~~TA~~il~~a~g~-~~~~--vD~~v~Rv~~rl-g~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~lv~~G~~  190 (226)
T 1orn_A          115 LMKLPGVGRKTANVVVSVAFGV-PAIA--VDTHVERVSKRL-GFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRY  190 (226)
T ss_dssp             HTTSTTCCHHHHHHHHHHHHCC-CCCC--CCHHHHHHHHHH-TSSCTTCCHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH
T ss_pred             HHHCCCccHHHHHHHHHHHCCC-ceee--eCHHHHHHHHHh-CCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence            3467999999999999999999 6433  889998887643 21110000000100001111112234457778888888


Q ss_pred             ccceeeccCCChhhhhh
Q 026577           93 DYRTFVGTNLNPLWEKF  109 (236)
Q Consensus        93 ~Yr~fv~t~~~p~~~~~  109 (236)
                           +|+..+|.|..|
T Consensus       191 -----~C~~~~P~C~~C  202 (226)
T 1orn_A          191 -----HCKAQSPQCPSC  202 (226)
T ss_dssp             -----TSCSSCCCGGGC
T ss_pred             -----HcCCCCCCCCCC
Confidence                 999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	2e-05
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	2e-04
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	0.001
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	0.003
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	0.003

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQD 167
           A+   +D ++LL  RS+ +    G   FPGG  +  +
Sbjct: 38  ALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGE 74

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 6/39 (15%)

Query: 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEP 165
           LG G VV  + +++LLL+         G +VFP GHPEP
Sbjct: 3   LGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEP 35

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)

Query: 131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEP 165
             V+ +  + LLLQ S+       H+  P GH EP
Sbjct: 22  PKVDNNAIEFLLLQASDG----IHHWTPPKGHVEP 52

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 24/104 (23%)

Query: 131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQE 190
            V+    +++LL  +    G   G +   GG  +  +                       
Sbjct: 9   LVLVLQPQRVLLGMKKR--GFGAGRWNGFGGKVQEGE----------------------T 44

Query: 191 MFDSITREVVEEIGVPSESLVSYSLLIRYQVVVPALLLCGYMCT 234
           + D   RE+ EE G+  ++L     ++   V  P L+     CT
Sbjct: 45  IEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCT 88

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 5/38 (13%)

Query: 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEP 165
               +V   +   ++L ++ N     G +  PGG  E 
Sbjct: 19  AAYIIVSKPENNTMVLVQAPN-----GAYFLPGGEIEG 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.56
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.53
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.51
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.49
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.49
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.49
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.49
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.46
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.44
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.44
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.43
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.42
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.4
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.36
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.35
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.34
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.27
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.27
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.26
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.24
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.22
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.22
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.15
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.1
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.08
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	98.93
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	98.8
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	98.6
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	98.53
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	98.45
d1keaa_	217	Thymine-DNA glycosylase {Archaeon Methanobacterium	96.0
d1rrqa1	221	Catalytic domain of MutY {Bacillus stearothermophi	95.8
d2abka_	211	Endonuclease III {Escherichia coli [TaxId: 562]}	95.44
d1orna_	214	Endonuclease III {Escherichia coli [TaxId: 562]}	95.23
d1kg2a_	224	Catalytic domain of MutY {Escherichia coli [TaxId:	94.1

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=3.3e-15  Score=119.04  Aligned_cols=62  Identities=19%  Similarity=0.292  Sum_probs=56.7

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEe-ccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~f-PGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      +++++|++++|++||+||+..+..+||+|.+ ||||+|++|+                      +.+||+||+.|||||+
T Consensus         4 a~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt----------------------~~eaa~RE~~EE~Gi~   61 (153)
T d1hzta_           4 AFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGES----------------------NEDAVIRRCRYELGVE   61 (153)
T ss_dssp             CEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCC----------------------HHHHHHHHHHHHHCCC
T ss_pred             EEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCc----------------------HHHHHHHHHHHHcCce
Confidence            6788899999999999999877789999998 9999999999                      9999999999999998


Q ss_pred             CCCCc
Q 026577          207 SESLV  211 (236)
Q Consensus       207 ~~~l~  211 (236)
                      +..+.
T Consensus        62 ~~~~~   66 (153)
T d1hzta_          62 ITPPE   66 (153)
T ss_dssp             BSCCE
T ss_pred             eeccc
Confidence            87543

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.6e-14  Score=114.42  Aligned_cols=72  Identities=21%  Similarity=0.330  Sum_probs=59.5

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++|+++|.+.+|+|||+||+..  .++|.|.+|||++|++|+                      +.+||+||+.||||+.
T Consensus        19 ~~v~~vi~~~~~~vLL~kR~~~--~~~g~W~lPGG~ve~gEt----------------------~~~aa~REl~EEtGl~   74 (160)
T d1ryaa_          19 VSLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDET----------------------LEAAFERLTMAELGLR   74 (160)
T ss_dssp             EEEEEEEECTTSCEEEEEECSS--SSTTSEECCEEECCTTCC----------------------HHHHHHHHHHHHHSSC
T ss_pred             EEEEEEEEeCCCeEEEEEeCCC--CCCCcEecccccccCCCc----------------------HHHHHHHHHHHHhCce
Confidence            5677788888999999999854  688999999999999999                      9999999999999999


Q ss_pred             CCCCccceeEEeeeeee
Q 026577          207 SESLVSYSLLIRYQVVV  223 (236)
Q Consensus       207 ~~~l~~~~ll~~~~~~~  223 (236)
                      +. +.....+..+...+
T Consensus        75 ~~-~~~~~~~~~~~~~~   90 (160)
T d1ryaa_          75 LP-ITAGQFYGVWQHFY   90 (160)
T ss_dssp             CC-GGGSEEEEEEEEEE
T ss_pred             Ee-eeeeeEEEEEEEec
Confidence            87 33444555555443

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=7.5e-15  Score=112.56  Aligned_cols=77  Identities=19%  Similarity=0.480  Sum_probs=58.6

Q ss_pred             EEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       131 ~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      +++++.+|++|++||+.. ..++|+|+||||++|++|+                      +.+||+||++||||+.+...
T Consensus         9 ~ii~~~~~~vLl~~R~~~-~~~~g~W~~PgG~ve~gEs----------------------~~~a~~RE~~EE~gl~~~~~   65 (129)
T d1puna_           9 GIIRNENNEIFITRRAAD-AHMANKLEFPGGKIEMGET----------------------PEQAVVRELQEEVGITPQHF   65 (129)
T ss_dssp             EECBCTTSCEEEBCCCSS-CSCTTCCBCSCCSCTTTSC----------------------TTHHHHHHHHHTTCSCCCCC
T ss_pred             EEEEECCCEEEEEEecCC-CCCCCcEECCcceecCCCc----------------------hhHHHHHHHHHHhCCccccc
Confidence            455677899999999855 5789999999999999998                      88999999999999998865


Q ss_pred             ccceeEEeeeeeecc--eeeeeEEE
Q 026577          211 VSYSLLIRYQVVVPA--LLLCGYMC  233 (236)
Q Consensus       211 ~~~~ll~~~~~~~~~--~~~~~~~~  233 (236)
                      .   ++..+...++.  .....|.|
T Consensus        66 ~---~~~~~~~~~~~~~~~~~~~~~   87 (129)
T d1puna_          66 S---LFEKLEYEFPDRHITLWFWLV   87 (129)
T ss_dssp             C---CSEEEEEECSSEEEEEEEEEC
T ss_pred             e---eeeEEeecccccceeEEEEEE
Confidence            3   33444434443  33444444

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=2.6e-14  Score=109.57  Aligned_cols=56  Identities=46%  Similarity=0.807  Sum_probs=50.3

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      +|+++++++.++++|++||.      .|.|.||||++|++|+                      +.+||+||++|||||.
T Consensus         3 v~agavv~~~~~~vLl~~~~------~g~w~~PgG~ve~gEt----------------------~~~aa~RE~~EEtGi~   54 (126)
T d1vcda1           3 LGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGES----------------------LEEAAVREVWEETGVR   54 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECT------TSCEECCEECCCTTCC----------------------HHHHHHHHHHHHHCCE
T ss_pred             EEEEEEEEECCCEEEEEEcC------CCCEECCccccCCCCC----------------------HHHHHHHHHHHHcCCe
Confidence            68999999999999998864      2789999999999999                      9999999999999998


Q ss_pred             CCCC
Q 026577          207 SESL  210 (236)
Q Consensus       207 ~~~l  210 (236)
                      ...+
T Consensus        55 ~~~~   58 (126)
T d1vcda1          55 AEVL   58 (126)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            7643

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.49  E-value=5.5e-14  Score=110.80  Aligned_cols=74  Identities=27%  Similarity=0.342  Sum_probs=58.1

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCC--CCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNV--GEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG  204 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~--~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG  204 (236)
                      .++++++.+.+|++||+||+...  ...+|+|.||||++|++|+                      +.+||+||++||||
T Consensus        13 ~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~----------------------~~~aa~RE~~EEtG   70 (158)
T d1sjya_          13 RAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGEN----------------------PQDAAVREACEETG   70 (158)
T ss_dssp             EEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSC----------------------HHHHHHHHHHHHHS
T ss_pred             eEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECCceecCCCCC----------------------HHHHHHHHHHHHhC
Confidence            36667777888999999998542  3467999999999999998                      99999999999999


Q ss_pred             CCCCCCccceeEEeeeeeecc
Q 026577          205 VPSESLVSYSLLIRYQVVVPA  225 (236)
Q Consensus       205 l~~~~l~~~~ll~~~~~~~~~  225 (236)
                      +.+..+   .+++.+...++.
T Consensus        71 l~~~~~---~~i~~~~~~~~~   88 (158)
T d1sjya_          71 LRVRPV---KFLGAYLGRFPD   88 (158)
T ss_dssp             CCEEEE---EEEEEEEEECTT
T ss_pred             ccceee---EEEEEEEEECCC
Confidence            988754   345555544443

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.3e-13  Score=110.07  Aligned_cols=62  Identities=26%  Similarity=0.405  Sum_probs=55.9

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEec-cccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fP-GG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      .+|.+++.+++|++||.||+..+..+||+|++| |||+|++|+                      +.+||+||++|||||
T Consensus        31 ~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs----------------------~~~aa~REl~EE~Gi   88 (161)
T d2fkba1          31 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQ----------------------LLESARREAEEELGI   88 (161)
T ss_dssp             EEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCC----------------------HHHHHHHHHHHHHCC
T ss_pred             eEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCc----------------------HHHHHHHHHHHHhCC
Confidence            477788889999999999998878899999986 999999999                      999999999999999


Q ss_pred             CCCCC
Q 026577          206 PSESL  210 (236)
Q Consensus       206 ~~~~l  210 (236)
                      ....+
T Consensus        89 ~~~~~   93 (161)
T d2fkba1          89 AGVPF   93 (161)
T ss_dssp             BSCCC
T ss_pred             cccee
Confidence            87654

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.49  E-value=2.1e-14  Score=115.00  Aligned_cols=57  Identities=28%  Similarity=0.392  Sum_probs=51.9

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      .+|+++|++.+|+|||+||+..    +|.|+||||++|++|+                      +.+||+||+.|||||.
T Consensus        15 ~~Vg~vI~n~~~~vLL~kR~~~----~g~W~~PgG~ve~gEt----------------------~~~Aa~REl~EEtGl~   68 (165)
T d1jkna_          15 RNVGICLMNNDKKIFAASRLDI----PDAWQMPQGGIDEGED----------------------PRNAAIRELREETGVT   68 (165)
T ss_dssp             EEEEEEEECTTSCEEEEEESSS----TTCEECCEECCCTTCC----------------------HHHHHHHHHHHHTCCC
T ss_pred             ccEEEEEEeCCCEEEEEEEcCC----CCcccCccceEcCCCC----------------------hhHHHHHHHHHhhccc
Confidence            4788899999999999999843    6999999999999998                      9999999999999998


Q ss_pred             CCC
Q 026577          207 SES  209 (236)
Q Consensus       207 ~~~  209 (236)
                      +..
T Consensus        69 ~~~   71 (165)
T d1jkna_          69 SAE   71 (165)
T ss_dssp             SEE
T ss_pred             ccc
Confidence            764

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.6e-13  Score=107.60  Aligned_cols=56  Identities=23%  Similarity=0.311  Sum_probs=48.7

Q ss_pred             EEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       131 ~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      .+++..+|+|||++|.+.  ...|+|.+|||++|++|+                      +.+||+||++|||||.+..+
T Consensus         9 ~v~i~~~~~vLL~~r~~~--~~~g~W~lPGG~ve~gEt----------------------~~~aa~RE~~EEtGl~~~~~   64 (156)
T d1irya_           9 LVLVLQPQRVLLGMKKRG--FGAGRWNGFGGKVQEGET----------------------IEDGARRELQEESGLTVDAL   64 (156)
T ss_dssp             EECEECSSEEEEEEESSS--SSBTCEECBCCBCCTTCC----------------------HHHHHHHHHHHHHSCCBSCC
T ss_pred             EEEEEECCEEEEEEecCC--CCCCEEECcEeEecCCCC----------------------HHHHHHHHHHHHHCCcccce
Confidence            444557899999999753  678999999999999999                      99999999999999987754

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.44  E-value=1.1e-13  Score=109.54  Aligned_cols=82  Identities=24%  Similarity=0.393  Sum_probs=55.9

Q ss_pred             eEEEEEEEe-CCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          127 LGNGAVVET-SDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       127 lgv~~vl~t-~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      +...+++.+ +++++|+++|+... ...|.|.|||||+|++|+                      +.+||+||+.||||+
T Consensus         9 ~~~~~~i~~~~~~~lLl~~R~~~~-~~~~~w~~PGG~ve~gEs----------------------~~~aa~RE~~EEtGl   65 (155)
T d2b06a1           9 LTNICLIEDLETQRVVMQYRAPEN-NRWSGYAFPGGHVENDEA----------------------FAESVIREIYEETGL   65 (155)
T ss_dssp             EEEEEEEEETTTTEEEEEEEC------CCEEECCCCBCCTTSC----------------------HHHHHHHHHHHHHSE
T ss_pred             EEEEEEEEECCCCEEEEEEECCCC-CCCCcEECceeEEcCCCC----------------------HHHHHHHHHHHhcCe
Confidence            333445544 56799999998664 444679999999999999                      999999999999999


Q ss_pred             CCCCCccceeEEeeeeeec---ceeeeeEEEE
Q 026577          206 PSESLVSYSLLIRYQVVVP---ALLLCGYMCT  234 (236)
Q Consensus       206 ~~~~l~~~~ll~~~~~~~~---~~~~~~~~~~  234 (236)
                      .+...   .++++.....+   ..+.+.|.|.
T Consensus        66 ~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~   94 (155)
T d2b06a1          66 TIQNP---QLVGIKNWPLDTGGRYIVICYKAT   94 (155)
T ss_dssp             EEESC---EEEEEEEEECTTSCEEEEEEEEEC
T ss_pred             eEeee---EEEEEEEeecCCCCeEEEEEEEEE
Confidence            87643   44555443332   2455566553

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.44  E-value=8.9e-14  Score=110.99  Aligned_cols=61  Identities=23%  Similarity=0.359  Sum_probs=49.7

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEec-cccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fP-GG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      +|++++.+++|++||.||+..+..+||+|++| |||+|++|+                      +.+||+||+.|||||+
T Consensus        30 ~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs----------------------~~eaa~REl~EE~Gl~   87 (162)
T d2o5fa1          30 VVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGET----------------------YEEAFRREAREELNVE   87 (162)
T ss_dssp             EEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCC----------------------HHHHHHHHHHHHHCCC
T ss_pred             EEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCC----------------------hhhhhhhhhhheeCcc
Confidence            67788899999999999998778999999876 999999999                      9999999999999999


Q ss_pred             CCCC
Q 026577          207 SESL  210 (236)
Q Consensus       207 ~~~l  210 (236)
                      +...
T Consensus        88 ~~~~   91 (162)
T d2o5fa1          88 IDAL   91 (162)
T ss_dssp             GGGS
T ss_pred             eeeE
Confidence            8754

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.43  E-value=2.1e-13  Score=105.82  Aligned_cols=70  Identities=27%  Similarity=0.348  Sum_probs=54.6

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++|++++ ..+|++||+||+..  ...|.|.||||++|++|+                      +.+||+||+.||||+.
T Consensus         4 v~va~ii-~~~~k~Llv~r~~~--~~~~~w~~PgG~ve~gEt----------------------~~~aa~RE~~EEtGl~   58 (146)
T d2b0va1           4 VTVAAVI-EQDDKYLLVEEIPR--GTAIKLNQPAGHLEPGES----------------------IIQACSREVLEETGHS   58 (146)
T ss_dssp             EEEEEEC-EETTEEEEEEECSS--SSCCEEECSEEECCTTSC----------------------HHHHHHHHHHHHHSEE
T ss_pred             EEEEEEE-EeCCEEEEEEEecC--CCCCEEECCeeeECCCCC----------------------HHHHHHHHHHHhheee
Confidence            3565555 46899999999865  457999999999999999                      9999999999999998


Q ss_pred             CCCCccceeEEeeeeeec
Q 026577          207 SESLVSYSLLIRYQVVVP  224 (236)
Q Consensus       207 ~~~l~~~~ll~~~~~~~~  224 (236)
                      +...   .++.++....+
T Consensus        59 ~~~~---~~~~~~~~~~~   73 (146)
T d2b0va1          59 FLPE---VLTGIYHWTCA   73 (146)
T ss_dssp             EEEE---EEEEEEEEEET
T ss_pred             cccc---eEEEEEEEecC
Confidence            7643   34444444443

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=2.2e-13  Score=105.23  Aligned_cols=76  Identities=25%  Similarity=0.363  Sum_probs=58.0

Q ss_pred             EEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCCc
Q 026577          132 VVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLV  211 (236)
Q Consensus       132 vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l~  211 (236)
                      +++..++++||+||...   .+|.|.||||++|++|+                      +.+||+||+.||||+.+... 
T Consensus         8 v~i~~~~~vLL~~~~~~---~~g~w~lpGG~ve~GEt----------------------~~~aa~REl~EEtG~~~~~~-   61 (131)
T d1vk6a2           8 VAIRRDDSILLAQHTRH---RNGVHTVLAGFVEVGET----------------------LEQAVAREVMEESGIKVKNL-   61 (131)
T ss_dssp             EEEEETTEEEEEEETTT---CSSCCBCEEEECCTTCC----------------------HHHHHHHHHHHHHCCEEEEE-
T ss_pred             EEEEeCCEEEEEEeccC---CCCCEecccCCCcCCCc----------------------HHHHHHHHHHHHhCCcccce-
Confidence            34456789999998743   36899999999999999                      99999999999999987643 


Q ss_pred             cceeEEeeeeeecceeeeeEEEEe
Q 026577          212 SYSLLIRYQVVVPALLLCGYMCTS  235 (236)
Q Consensus       212 ~~~ll~~~~~~~~~~~~~~~~~~~  235 (236)
                        .+++.........+...|.|..
T Consensus        62 --~~~~~~~~~~~~~~~~~f~~~~   83 (131)
T d1vk6a2          62 --RYVTSQPWPFPQSLMTAFMAEY   83 (131)
T ss_dssp             --EEEEEEEEETTEEEEEEEEEEE
T ss_pred             --eEEEEeccCcCceEEEEEEEEE
Confidence              4455555555555666666653

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.40  E-value=3.7e-13  Score=110.53  Aligned_cols=68  Identities=24%  Similarity=0.402  Sum_probs=49.9

Q ss_pred             EEEEEEE-eCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          128 GNGAVVE-TSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       128 gv~~vl~-t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      +|.+++. +.+.+|||+||+.....++|.|.||||++|++|+                      +.+||+||++|||||.
T Consensus        34 aVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~----------------------~~~aAlRE~~EE~Gl~   91 (187)
T d1nqza_          34 AVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGET----------------------PTQAALREAQEEVALD   91 (187)
T ss_dssp             EEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCC----------------------HHHHHHHHHHHHHCCC
T ss_pred             EEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCc----------------------hhHHHHHHHHHhhccc
Confidence            5554444 2345799999998877789999999999999998                      8999999999999999


Q ss_pred             CCCCccceeEEeee
Q 026577          207 SESLVSYSLLIRYQ  220 (236)
Q Consensus       207 ~~~l~~~~ll~~~~  220 (236)
                      .+.+.   +++...
T Consensus        92 ~~~~~---~lg~l~  102 (187)
T d1nqza_          92 PAAVT---LLGELD  102 (187)
T ss_dssp             GGGCE---EEEECC
T ss_pred             cceeE---Eeeccc
Confidence            87653   455433

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.36  E-value=6.6e-13  Score=104.75  Aligned_cols=84  Identities=17%  Similarity=0.261  Sum_probs=61.0

Q ss_pred             CceEEEEEEEe-CC--CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHH
Q 026577          125 SPLGNGAVVET-SD--KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVE  201 (236)
Q Consensus       125 ~~lgv~~vl~t-~d--g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~E  201 (236)
                      -.++|.+++.. .+  .+|||+||+..  .++|.|.+|||++|++|+                      +.+||+||+.|
T Consensus         9 ~~v~Vd~Vi~~~~~~~~~vLLv~R~~~--p~~g~W~lPGG~ie~~Es----------------------~~~aa~REl~E   64 (147)
T d2fb1a2           9 FYLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDES----------------------VDDAAKRVLAE   64 (147)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECEEEECCTTSC----------------------HHHHHHHHHHH
T ss_pred             cceEEEEEEEEEeCCcCEEEEEEccCC--CCCCcEeCcEeeecCCCC----------------------HHHHHHHHHHH
Confidence            34567666653 22  37999999754  577999999999999999                      99999999999


Q ss_pred             hhCCCCCCCccceeEEeeeeee----cceeeeeEEEEe
Q 026577          202 EIGVPSESLVSYSLLIRYQVVV----PALLLCGYMCTS  235 (236)
Q Consensus       202 EtGl~~~~l~~~~ll~~~~~~~----~~~~~~~~~~~~  235 (236)
                      |||+.+..+   .+++.+....    ...+...|.|.+
T Consensus        65 EtGl~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~   99 (147)
T d2fb1a2          65 LTGLENVYM---EQVGAFGAIDRDPGERVVSIAYYALI   99 (147)
T ss_dssp             HHCCCSCEE---EEEEEECCTTSSSSSCEEEEEEEEEC
T ss_pred             HhCCcccce---eeeeEecCCcccCCCceEEEEEEEEe
Confidence            999987643   4455554332    124556677653

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.35  E-value=1.2e-12  Score=103.00  Aligned_cols=55  Identities=25%  Similarity=0.400  Sum_probs=47.3

Q ss_pred             EEEEEeCC-CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577          130 GAVVETSD-KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE  208 (236)
Q Consensus       130 ~~vl~t~d-g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~  208 (236)
                      ++++++.| ++|||+||+..    .|.|.||||++|++|+                      +.+||+||+.||||+.+.
T Consensus         6 Gaii~~~~~~kvLLvk~~~~----~~~W~lPgG~ie~gEs----------------------~~~aa~RE~~EEtGi~~~   59 (151)
T d2a6ta2           6 GAIMLDMSMQQCVLVKGWKA----SSGWGFPKGKIDKDES----------------------DVDCAIREVYEETGFDCS   59 (151)
T ss_dssp             EEEEBCSSSSEEEEEEESST----TCCCBCSEEECCTTCC----------------------HHHHHHHHHHHHHCCCCT
T ss_pred             EEEEEECCCCEEEEEEEeCC----CCCEECCcccccCCCC----------------------HHHHHHHHHHHHhCCCce
Confidence            56677776 68999998743    4789999999999999                      999999999999999886


Q ss_pred             CC
Q 026577          209 SL  210 (236)
Q Consensus       209 ~l  210 (236)
                      .+
T Consensus        60 ~~   61 (151)
T d2a6ta2          60 SR   61 (151)
T ss_dssp             TT
T ss_pred             ee
Confidence            54

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.34  E-value=4.5e-13  Score=104.03  Aligned_cols=53  Identities=30%  Similarity=0.652  Sum_probs=45.0

Q ss_pred             EEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCC
Q 026577          130 GAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSES  209 (236)
Q Consensus       130 ~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~  209 (236)
                      +++|+ .||+|||+||..     .|.|.||||++|++|+                      +.+||+||+.||||+.+..
T Consensus         5 ~~vi~-~d~kvLl~~r~~-----~~~w~lPgG~ie~gE~----------------------~~~aa~RE~~EEtGl~~~~   56 (152)
T d1k2ea_           5 SGVLV-ENGKVLLVKHKR-----LGVYIYPGGHVEHNET----------------------PIEAVKREFEEETGIVVEP   56 (152)
T ss_dssp             EEECE-ETTEEEEEECTT-----TCSEECSEEECCTTCC----------------------HHHHHHHHHHHHHSEEEEE
T ss_pred             EEEEE-ECCEEEEEEEcC-----CCeEECCeeEEeCCcc----------------------HHHHHHHHHHHHHCCceee
Confidence            34444 689999999863     3899999999999998                      9999999999999998754


Q ss_pred             C
Q 026577          210 L  210 (236)
Q Consensus       210 l  210 (236)
                      .
T Consensus        57 ~   57 (152)
T d1k2ea_          57 I   57 (152)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.9e-12  Score=106.09  Aligned_cols=60  Identities=22%  Similarity=0.362  Sum_probs=48.3

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      .+|.++.. .|+++||+|+.+. +.....|.||||++|++|+                      +.+||+||+.||||+.
T Consensus        49 ~~v~vi~~-~~~~vlLvrq~R~-~~~~~~~elP~G~ie~gE~----------------------p~~aA~REl~EEtG~~  104 (186)
T d1vhza_          49 EAVMIVPI-VDDHLILIREYAV-GTESYELGFSKGLIDPGES----------------------VYEAANRELKEEVGFG  104 (186)
T ss_dssp             CEEEEEEE-ETTEEEEEEEEET-TTTEEEEECEEEECCTTCC----------------------HHHHHHHHHHHHHSEE
T ss_pred             cEEEEEEc-cCCEEEEEEeeec-CCCceEeecccccCCCCcC----------------------HHHHHHHHHHHHhccc
Confidence            35544444 5789999987643 4667789999999999999                      9999999999999998


Q ss_pred             CCCC
Q 026577          207 SESL  210 (236)
Q Consensus       207 ~~~l  210 (236)
                      +..+
T Consensus       105 ~~~~  108 (186)
T d1vhza_         105 ANDL  108 (186)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            7644

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.7e-12  Score=98.68  Aligned_cols=66  Identities=27%  Similarity=0.416  Sum_probs=48.5

Q ss_pred             EEEEEEe--CCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          129 NGAVVET--SDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       129 v~~vl~t--~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      ++++++.  .++.+||++|+.    .+|.|.||||++|++|+                      +.+||+||+.|||||.
T Consensus        14 a~~vv~~~~~~~~~lL~~~~~----~~~~W~~PgG~ve~gEs----------------------~~~aa~RE~~EEtGl~   67 (135)
T d2fvva1          14 AACLCFRSESEEEVLLVSSSR----HPDRWIVPGGGMEPEEE----------------------PSVAAVREVCEEAGVK   67 (135)
T ss_dssp             EEEEEESSTTCCEEEEEECSS----CTTSEECSEEECCTTCC----------------------HHHHHHHHHHHHHCEE
T ss_pred             EEEEEEEecCCCEEEEEEEeC----CCCcEECCccccCCCCC----------------------HHHHHHHHHHHHhCCc
Confidence            3444443  455677777764    36999999999999998                      9999999999999998


Q ss_pred             CCCCccceeEEeeeeee
Q 026577          207 SESLVSYSLLIRYQVVV  223 (236)
Q Consensus       207 ~~~l~~~~ll~~~~~~~  223 (236)
                      +...   .++..+....
T Consensus        68 ~~~~---~~~~~~~~~~   81 (135)
T d2fvva1          68 GTLG---RLVGIFENQE   81 (135)
T ss_dssp             EEEE---EEEEEEEETT
T ss_pred             ceee---EEEEEEeecc
Confidence            7643   3444444333

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.26  E-value=1.3e-11  Score=102.16  Aligned_cols=89  Identities=24%  Similarity=0.327  Sum_probs=61.4

Q ss_pred             ccCCceEEEEEEEe--CC---CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHH
Q 026577          122 HTASPLGNGAVVET--SD---KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSIT  196 (236)
Q Consensus       122 ~~~~~lgv~~vl~t--~d---g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~  196 (236)
                      |....++|.++++.  .+   .+|||+||+..  .+.|.|.+|||++|++|+                      +.+||+
T Consensus        33 y~~P~v~vd~vi~~~~~~~~~l~VLLv~R~~~--p~~g~W~lPGG~ve~gEs----------------------~~eaa~   88 (202)
T d2fmla2          33 YEKPSLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRNES----------------------TEDSVL   88 (202)
T ss_dssp             CCCCEEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECCEEECCTTSC----------------------HHHHHH
T ss_pred             CCCCccEEEEEEEEEecCCCeeEEEEEEecCC--CCCCcEECCEEeecCCCC----------------------HHHHhh
Confidence            33344566666543  22   27999999854  677999999999999999                      999999


Q ss_pred             HHHHHhhCCCCCCCccceeEEeeeeee----cceeeeeEEEEe
Q 026577          197 REVVEEIGVPSESLVSYSLLIRYQVVV----PALLLCGYMCTS  235 (236)
Q Consensus       197 REl~EEtGl~~~~l~~~~ll~~~~~~~----~~~~~~~~~~~~  235 (236)
                      ||+.||||+.+... ....+..|....    ..++...|+|.+
T Consensus        89 REl~EEtGl~~~~~-~l~~~~~~~~~~r~~~~~~i~~~~~~~~  130 (202)
T d2fmla2          89 RETKEETGVVISQE-NIEQLHSFSRPDRDPRGWVVTVSYLAFI  130 (202)
T ss_dssp             HHHHHHHCCCCCGG-GEEEEEEECCTTSSTTSSEEEEEEEEEC
T ss_pred             hhhHhhcCeeeecc-eeeeeeecccCCccccceEEEEEEEEEe
Confidence            99999999987643 233344443221    124556676653

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.24  E-value=2e-11  Score=93.09  Aligned_cols=46  Identities=37%  Similarity=0.608  Sum_probs=41.3

Q ss_pred             eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          139 KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       139 ~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      ++||++|+..    +|.|.||||++|++|+                      +.+||+||+.||||+.+..+
T Consensus        18 ~~Ll~~r~~~----~g~W~~PgG~ie~gE~----------------------~~~aa~RE~~EEtGl~~~~~   63 (137)
T d1ktga_          18 EFLLLQASYP----PHHWTPPKGHVDPGED----------------------EWQAAIRETKEEANITKEQL   63 (137)
T ss_dssp             EEEEEEESST----TCCEESSEEECCTTCC----------------------HHHHHHHHHHHHHCCCGGGE
T ss_pred             EEEEEEEcCC----CCcEeCcccccccCCC----------------------HHHHHHHHHHHHhCCcceee
Confidence            6899998743    5999999999999998                      99999999999999998754

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.22  E-value=7.9e-12  Score=96.97  Aligned_cols=56  Identities=29%  Similarity=0.551  Sum_probs=45.7

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP  206 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~  206 (236)
                      .++.++|.+.++.+||+.|...     |.|.||||++|++|+                      +.+||+||+.||||+.
T Consensus        18 ~~~~~vi~~~~~~~lll~~~~~-----~~w~lPgG~ie~gEs----------------------~~~aa~RE~~EEtGl~   70 (147)
T d2azwa1          18 YAAYIIVSKPENNTMVLVQAPN-----GAYFLPGGEIEGTET----------------------KEEAIHREVLEELGIS   70 (147)
T ss_dssp             CEEEEECEEGGGTEEEEEECTT-----SCEECSEEECCTTCC----------------------HHHHHHHHHHHHHSEE
T ss_pred             CeEEEEEEECCCCEEEEEEcCC-----CeEECcEeEeCCCCC----------------------HHHHHHHHHHhhhcee
Confidence            3666777777666666666533     789999999999998                      9999999999999998


Q ss_pred             CCC
Q 026577          207 SES  209 (236)
Q Consensus       207 ~~~  209 (236)
                      ...
T Consensus        71 ~~~   73 (147)
T d2azwa1          71 VEI   73 (147)
T ss_dssp             EEE
T ss_pred             eee
Confidence            764

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.22  E-value=9.5e-12  Score=95.29  Aligned_cols=78  Identities=17%  Similarity=0.297  Sum_probs=55.7

Q ss_pred             EEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCC
Q 026577          130 GAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSES  209 (236)
Q Consensus       130 ~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~  209 (236)
                      +++|++.+|++|+.||..+ +.++|+|+||||++|+.+.                       .+++.||+.||+|+++..
T Consensus         8 ~~vi~~~~g~iLl~kR~~~-~~~~GlWefP~g~~e~~~~-----------------------~e~l~rel~ee~gi~v~~   63 (127)
T d1rrqa2           8 VAVLADDEGRVLIRKRDST-GLLANLWEFPSCETDGADG-----------------------KEKLEQMVGEQYGLQVEL   63 (127)
T ss_dssp             EEEEEESSSEEEEEECCSS-STTTTCEECCEEECTTTCC-----------------------HHHHHHTTC----CEEEE
T ss_pred             EEEEEECCCEEEEEECCCC-CCCCCceecccccccCCCC-----------------------HHHHHHHhhhhcceEEEe
Confidence            3456788999999999854 6999999999999997664                       478999999999998764


Q ss_pred             CccceeEEeeeeeecc--eeeeeEEEE
Q 026577          210 LVSYSLLIRYQVVVPA--LLLCGYMCT  234 (236)
Q Consensus       210 l~~~~ll~~~~~~~~~--~~~~~~~~~  234 (236)
                      ..   .++...+.+++  +.+.-|.|+
T Consensus        64 ~~---~l~~~~H~fsh~~~~~~~~~~~   87 (127)
T d1rrqa2          64 TE---PIVSFEHAFSHLVWQLTVFPGR   87 (127)
T ss_dssp             CS---CCEEEEEECSSEEEEEEEEEEE
T ss_pred             cc---ccccceEecCCeEEEEEEEEEE
Confidence            32   34556667765  455666665

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.15  E-value=2.1e-11  Score=101.11  Aligned_cols=60  Identities=15%  Similarity=0.190  Sum_probs=50.2

Q ss_pred             eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCC-CCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577          127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPE-PQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV  205 (236)
Q Consensus       127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~E-p~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl  205 (236)
                      -+|+++.++.+|+|||+|+.+. +.....|+||||++| ++|+                      +.+||+||++||||+
T Consensus        39 ~~V~vl~~~~~~~ilLvrq~R~-~~~~~~welPaG~ie~~gE~----------------------~~~aA~REl~EETG~   95 (202)
T d1mqea_          39 GAVAIVAMDDNGNIPMVYQYRH-TYGRRLWELPAGLLDVAGEP----------------------PHLTAARELREEVGL   95 (202)
T ss_dssp             CEEEEEECCTTSEEEEEEEEET-TTTEEEEECCEEECCSTTCC----------------------HHHHHHHHHHHHHCE
T ss_pred             CeEEEEEECCCCEEEEEEeccc-ccCceEEeccccccccCCCC----------------------HHHHHHHHHhhcccc
Confidence            3677777788999999997643 355668999999999 7898                      999999999999999


Q ss_pred             CCCC
Q 026577          206 PSES  209 (236)
Q Consensus       206 ~~~~  209 (236)
                      ....
T Consensus        96 ~~~~   99 (202)
T d1mqea_          96 QAST   99 (202)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            8764

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.10  E-value=3.4e-11  Score=95.97  Aligned_cols=57  Identities=16%  Similarity=0.342  Sum_probs=47.6

Q ss_pred             EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577          128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS  207 (236)
Q Consensus       128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~  207 (236)
                      +|++++.+ ||++||+|+.+. +.....|+||||++|++|+                      +.+||+||+.||||+..
T Consensus        26 aV~vl~~~-~~~vlLv~q~R~-~~~~~~~elP~G~ve~gE~----------------------~~~aA~REl~EEtG~~~   81 (158)
T d1v8ya_          26 AVAVIALR-EGRMLFVRQMRP-AVGLAPLEIPAGLIEPGED----------------------PLEAARRELAEQTGLSG   81 (158)
T ss_dssp             EEEEEEEE-TTEEEEEECCBT-TTTBCCBBCSEEECCTTCC----------------------HHHHHHHHHHHHHSEEE
T ss_pred             EEEEEEEE-CCEEEEEEeeec-CCCCceEecchhhccccCC----------------------HHHHHHHHHHhhcCCcc
Confidence            56666664 789999997643 3566799999999999998                      99999999999999965


Q ss_pred             C
Q 026577          208 E  208 (236)
Q Consensus       208 ~  208 (236)
                      +
T Consensus        82 ~   82 (158)
T d1v8ya_          82 D   82 (158)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=9.6e-11  Score=91.49  Aligned_cols=50  Identities=32%  Similarity=0.509  Sum_probs=43.9

Q ss_pred             eCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          135 TSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       135 t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      +.++++||++|+..    .+.|.+|||++|++|+                      +.+||+||++||||+....+
T Consensus        26 ~~~~~~LL~~~~~~----~~~W~lPgG~ie~gEt----------------------~~~aa~REl~EEtG~~~~~~   75 (153)
T d1xsba_          26 NNAIEFLLLQASDG----IHHWTPPKGHVEPGED----------------------DLETALRATQEEAGIEAGQL   75 (153)
T ss_dssp             STTEEEEEEEESST----TCCEECCEEECCSSSC----------------------HHHHHHHHHHHTTSCCTTTE
T ss_pred             CCCCEEEEEEecCC----CCcEECCeeecCCCCC----------------------HHHHHHHHHHHHhCCcccee
Confidence            35679999998854    3789999999999998                      99999999999999998754

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=9.2e-10  Score=91.50  Aligned_cols=64  Identities=17%  Similarity=0.175  Sum_probs=50.0

Q ss_pred             CceEEEEEEEeCC-CeEEEEEEcCCC----CCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHH
Q 026577          125 SPLGNGAVVETSD-KKILLLQRSNNV----GEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREV  199 (236)
Q Consensus       125 ~~lgv~~vl~t~d-g~vLl~rRs~~~----~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl  199 (236)
                      ++-+|++++++.+ ++++|+|+.+..    +..+-.|++|+|.+|++|+                      +.+||+||+
T Consensus        56 ~~~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~----------------------p~~aA~REL  113 (209)
T d1g0sa_          56 RGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGES----------------------VEDVARREA  113 (209)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCC----------------------HHHHHHHHH
T ss_pred             cCCEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcC----------------------HHHHHHHHH
Confidence            4456777777654 689999986431    1133478999999999998                      999999999


Q ss_pred             HHhhCCCCCCC
Q 026577          200 VEEIGVPSESL  210 (236)
Q Consensus       200 ~EEtGl~~~~l  210 (236)
                      .||||+....+
T Consensus       114 ~EEtG~~~~~l  124 (209)
T d1g0sa_         114 IEEAGLIVKRT  124 (209)
T ss_dssp             HHHHCCCCCCE
T ss_pred             Hhhhcccccce
Confidence            99999998755

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.80  E-value=7.3e-09  Score=85.24  Aligned_cols=47  Identities=28%  Similarity=0.590  Sum_probs=38.5

Q ss_pred             CCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          137 DKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       137 dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      +..+|+.+|.      .|.|.||||++|++|+.                     ++++|.||+.||||+.+..+
T Consensus        42 ~~~vl~~~r~------~g~~~~pgg~~~~~e~~---------------------~~~~~~re~~ee~g~~~~~~   88 (196)
T d1u20a1          42 RRVLLMMMRF------DGRLGFPGGFVDTRDIS---------------------LEEGLKRELEEELGPALATV   88 (196)
T ss_dssp             CEEEEEEEET------TSCEECSEEEECTTTSC---------------------HHHHHHHHHHHHHCGGGGGC
T ss_pred             CcEEEEEEec------CCcEECCccccCCCCCc---------------------HHHHHHHHHHHHhCccceeE
Confidence            4556776664      39999999999999951                     77899999999999987754

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=7.2e-08  Score=73.90  Aligned_cols=75  Identities=21%  Similarity=0.228  Sum_probs=50.5

Q ss_pred             CCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCCcccee
Q 026577          136 SDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLVSYSL  215 (236)
Q Consensus       136 ~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l~~~~l  215 (236)
                      .||+|||.||+.+ +.++|+|+||+|.+|.++.                      ...++++|..+|.+...... ....
T Consensus        25 ~~~~iLl~kR~~~-g~l~GlWefP~~~~~~~e~----------------------~~~~~~~~~~~e~~~~~~~~-~~~~   80 (142)
T d1x51a1          25 LGAQILLVQRPNS-GLLAGLWEFPSVTWEPSEQ----------------------LQRKALLQELQRWAGPLPAT-HLRH   80 (142)
T ss_dssp             SSEEEEEEECCCC-STTCSCEECCEEECCSSHH----------------------HHHHHHHHHHHHHSCCCCST-TCEE
T ss_pred             CCCEEEEEECCCC-CCCCcceeeeEeeccCCcc----------------------hhHHHHHHHHHHhccCccee-eeee
Confidence            3789999999855 7999999999999999887                      66666665555554433322 2233


Q ss_pred             EEeeeeeecc--eeeeeEEEE
Q 026577          216 LIRYQVVVPA--LLLCGYMCT  234 (236)
Q Consensus       216 l~~~~~~~~~--~~~~~~~~~  234 (236)
                      ++...+.+++  +.+.-|.|+
T Consensus        81 ~~~v~H~fsH~~~~~~v~~~~  101 (142)
T d1x51a1          81 LGEVVHTFSHIKLTYQVYGLA  101 (142)
T ss_dssp             CCCBCCBCSSCEEEEEEEEEE
T ss_pred             eccceeccCCcceEEEEEEEE
Confidence            4455666665  445556665

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3e-08  Score=86.11  Aligned_cols=45  Identities=22%  Similarity=0.454  Sum_probs=40.1

Q ss_pred             eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577          139 KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL  210 (236)
Q Consensus       139 ~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l  210 (236)
                      +||+++|...     |.|.||||++|++|+                      +.++|+||+.||||+.+..+
T Consensus       140 qvLlIkR~d~-----g~WaLPGG~Vd~GEs----------------------~~~Aa~REl~EETGl~~~~~  184 (292)
T d1q33a_         140 QFVAIKRKDC-----GEWAIPGGMVDPGEK----------------------ISATLKREFGEEALNSLQKT  184 (292)
T ss_dssp             EEEEEECTTT-----CSEECCCEECCTTCC----------------------HHHHHHHHHHHHHSCGGGSC
T ss_pred             EEEEEEecCC-----CcEeCCcccCCCCCC----------------------HHHHHHHHHHHHhCcccccc
Confidence            5899998744     889999999999999                      99999999999999987643

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=4.3e-07  Score=73.71  Aligned_cols=62  Identities=18%  Similarity=0.166  Sum_probs=44.9

Q ss_pred             ceEEEEEEEe-CCCeEEEEEEcCCC-----CCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHH
Q 026577          126 PLGNGAVVET-SDKKILLLQRSNNV-----GEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREV  199 (236)
Q Consensus       126 ~lgv~~vl~t-~dg~vLl~rRs~~~-----~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl  199 (236)
                      +-+|++++.+ .+++++|+|+.+..     ....-.|.+|||-+|+ +.                      +.+||+||+
T Consensus        43 ~~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d~-e~----------------------p~~aA~REL   99 (189)
T d1viua_          43 GNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDN-DE----------------------PEVCIRKEA   99 (189)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECTT-SC----------------------HHHHHHHHH
T ss_pred             CCEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecCC-CC----------------------HHHHHHHHH
Confidence            3367777765 46799999875321     1123467899999884 44                      679999999


Q ss_pred             HHhhCCCCCCC
Q 026577          200 VEEIGVPSESL  210 (236)
Q Consensus       200 ~EEtGl~~~~l  210 (236)
                      .||||+.+..+
T Consensus       100 ~EEtG~~~~~~  110 (189)
T d1viua_         100 IEETGYEVGEV  110 (189)
T ss_dssp             HHHHSCCCCCC
T ss_pred             HHhhCCcceEE
Confidence            99999998754

>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Thymine-DNA glycosylase
species: Archaeon Methanobacterium thermoformicicum [TaxId: 145262]

Probab=96.00  E-value=2.6e-05  Score=64.26  Aligned_cols=89  Identities=8%  Similarity=0.050  Sum_probs=61.5

Q ss_pred             ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHh--hCCCcccCceEEEeeeEEecCCCCCCcceEEEecC
Q 026577           13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQ--INKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLG   90 (236)
Q Consensus        13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~--~~p~lfng~kfrl~~~~~~~~~~~~~~~~~~l~lg   90 (236)
                      |...||+|+++++++++.+|++ |...  ++.++.|+-.+..-  ..+.-.+...++-....+.+.+...+.+++.|.+|
T Consensus       115 L~~LpGVG~kTA~~il~~~~~~-~~~~--vD~~v~Rv~~R~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~l~~~G  191 (217)
T d1keaa_         115 ILDLPGVGKYTCAAVMCLAFGK-KAAM--VDANFVRVINRYFGGSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFS  191 (217)
T ss_dssp             HHTSTTCCHHHHHHHHHHTTCC-CCCC--CCHHHHHHHHHHHCGGGTTCCTTSHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhHHHHHHhcCC-cccc--cccchhhhhhhccccCccccchHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence            3467999999999999999999 6544  89999999876542  22212222222211122233344556788899999


Q ss_pred             CcccceeeccCCChhhhhh
Q 026577           91 LTDYRTFVGTNLNPLWEKF  109 (236)
Q Consensus        91 ~T~Yr~fv~t~~~p~~~~~  109 (236)
                      .+     +|+..+|.|..|
T Consensus       192 ~~-----iC~~~~P~C~~C  205 (217)
T d1keaa_         192 AI-----ICAPRKPKCEKC  205 (217)
T ss_dssp             HH-----TSCSSSCCGGGC
T ss_pred             HH-----hcCCCCCCCCCC
Confidence            99     999999998766

>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.80  E-value=1.8e-05  Score=65.22  Aligned_cols=89  Identities=16%  Similarity=0.185  Sum_probs=61.2

Q ss_pred             ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhh---CCCcccCceEEEeeeEEecCCCCCCcceEEEec
Q 026577           13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQI---NKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHL   89 (236)
Q Consensus        13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~---~p~lfng~kfrl~~~~~~~~~~~~~~~~~~l~l   89 (236)
                      |...||||++|++++++.+|++ |.+.  ++.+|.|+-.+..--   .+...+..++......+.+.+...+.+++.|++
T Consensus       109 Ll~LpGIG~kTA~~il~~a~~~-p~~~--VDt~v~Rv~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  185 (221)
T d1rrqa1         109 FSRLKGVGPYTVGAVLSLAYGV-PEPA--VNGNVMRVLSRLFLVTDDIAKCSTRKRFEQIVREIMAYENPGAFNEALIEL  185 (221)
T ss_dssp             HHTSTTCCHHHHHHHHHHHTCC-CCCC--CCHHHHHHHHHHTTCCSCTTSTTHHHHHHHHHHHHCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHhcC-cccc--cCccHHHHHHHhhccCCCchhhhHHHHHHHhhhhhhhcccchHHHHHHHHH
Confidence            4478999999999999999998 7654  999999998754321   122222223332222222333345578889999


Q ss_pred             CCcccceeeccCCChhhhhh
Q 026577           90 GLTDYRTFVGTNLNPLWEKF  109 (236)
Q Consensus        90 g~T~Yr~fv~t~~~p~~~~~  109 (236)
                      |.+     +|+..+|.|..|
T Consensus       186 G~~-----iC~~~~P~C~~C  200 (221)
T d1rrqa1         186 GAL-----VCTPRRPSCLLC  200 (221)
T ss_dssp             HHH-----TSCSSSCCGGGC
T ss_pred             HHH-----HcCCCCCCCCCC
Confidence            999     999999998765

>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=3.5e-05  Score=63.16  Aligned_cols=85  Identities=12%  Similarity=0.055  Sum_probs=58.6

Q ss_pred             CCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhCCCcccCceEEEeeeEEecCCCCCCcceEEEecCCccc
Q 026577           15 CPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDY   94 (236)
Q Consensus        15 ~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~p~lfng~kfrl~~~~~~~~~~~~~~~~~~l~lg~T~Y   94 (236)
                      ..||+|++|++++++.+|++ |.+.  +|.+|.|+-.+. --.+. -+..++........+.+...+.++..|.+|.+  
T Consensus       113 ~LpGVG~~TA~~Il~~a~~~-p~~~--vD~nv~Rv~~R~-g~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~--  185 (211)
T d2abka_         113 ALPGVGRKTANVVLNTAFGW-PTIA--VDTHIFRVCNRT-QFAPG-KNVEQVEEKLLKVVPAEFKVDCHHWLILHGRY--  185 (211)
T ss_dssp             HSTTCCHHHHHHHHHHHHCC-CCCC--CCHHHHHHHHHH-CSSCC-SSHHHHHHHHHHHSCGGGTTTHHHHHHHHHHH--
T ss_pred             HHHhhchHHHHHHHHHHhcC-cccc--ccHHHHHHHHHh-ccCcc-chhhHHHHHHhhcCccccHHHHHHHHHHHhhh--
Confidence            56999999999999999998 7654  999999997643 21110 01111111111222334456778888999999  


Q ss_pred             ceeeccCCChhhhhh
Q 026577           95 RTFVGTNLNPLWEKF  109 (236)
Q Consensus        95 r~fv~t~~~p~~~~~  109 (236)
                         +||..+|.|..|
T Consensus       186 ---vC~~~~P~C~~C  197 (211)
T d2abka_         186 ---TCIARKPRCGSC  197 (211)
T ss_dssp             ---TSCSSSCCGGGC
T ss_pred             ---hccCCCCCCCCC
Confidence               999999998765

>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=2.8e-05  Score=63.78  Aligned_cols=88  Identities=10%  Similarity=0.024  Sum_probs=57.4

Q ss_pred             ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhCCCcccCceEEEeeeEEecCCCCCCcceEEEecCCc
Q 026577           13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLT   92 (236)
Q Consensus        13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~p~lfng~kfrl~~~~~~~~~~~~~~~~~~l~lg~T   92 (236)
                      |..+||+|++|++++++.+|++ |.+.  ++.+|.|+-.+.--.+..- +-......-..+.+.+...+.++..|.+|.+
T Consensus       112 L~~LpGVG~kTA~~il~~a~~~-~~~~--VDtnv~RV~~Rlg~~~~~~-~~~~~~~~l~~~~p~~~~~~~~~~l~~~G~~  187 (214)
T d1orna_         112 LMKLPGVGRKTANVVVSVAFGV-PAIA--VDTHVERVSKRLGFCRWDD-SVLEVEKTLMKIIPKEEWSITHHRMIFFGRY  187 (214)
T ss_dssp             HTTSTTCCHHHHHHHHHHHHCC-CCCC--CCHHHHHHHHHHTSSCTTC-CHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH
T ss_pred             HHhCcCcccchHHHHHHHHhcC-Cccc--ccchHHHHHHHHHHhhccc-chhhhhhhhhhcCccccHHHHHHHHHHHHHH
Confidence            4478999999999999999998 7544  9999999976431111000 0000110001112223445678888999998


Q ss_pred             ccceeeccCCChhhhhh
Q 026577           93 DYRTFVGTNLNPLWEKF  109 (236)
Q Consensus        93 ~Yr~fv~t~~~p~~~~~  109 (236)
                           +|+..+|.|..|
T Consensus       188 -----iC~~~~P~C~~C  199 (214)
T d1orna_         188 -----HCKAQSPQCPSC  199 (214)
T ss_dssp             -----TSCSSCCCGGGC
T ss_pred             -----HCcCCCCCCCCC
Confidence                 999999998765

>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=6.9e-05  Score=61.74  Aligned_cols=89  Identities=12%  Similarity=0.141  Sum_probs=58.7

Q ss_pred             ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhCCCcccCc----eEEEeeeEEecCCCCCCcceEEEe
Q 026577           13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQ----KFRYGGHIMRGEGGSSVESHVCLH   88 (236)
Q Consensus        13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~p~lfng~----kfrl~~~~~~~~~~~~~~~~~~l~   88 (236)
                      |..+||+|++|++++++.+|++ |.+.  ++.+|.|+-.+..-- ...-+..    .++.....+.+.....+.+++.|.
T Consensus       111 L~~LpGVG~kTA~~il~~a~~~-~~~~--vD~~v~Rv~~Rl~~~-~~~~~~~~~~~~l~~~~~~~lp~~~~~~~~~~l~~  186 (224)
T d1kg2a_         111 VAALPGVGRSTAGAILSLSLGK-HFPI--LDGNVKRVLARCYAV-SGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMD  186 (224)
T ss_dssp             HHTSTTCCHHHHHHHHHHHHCC-SCCC--CCHHHHHHHHHHHTC-CSCTTSHHHHHHHHHHHHHHCCSTTHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhHHHHHHhhhc-cccc--ccchHHHHHHHhccc-cCCccchHHHHHHHHHhhccCcchhhhHHHHHHHH
Confidence            4478999999999999999999 7554  899999998754221 1000000    011111112222333456888889


Q ss_pred             cCCcccceeeccCCChhhhhhc
Q 026577           89 LGLTDYRTFVGTNLNPLWEKFL  110 (236)
Q Consensus        89 lg~T~Yr~fv~t~~~p~~~~~~  110 (236)
                      +|.+     +|+..+|.|..|.
T Consensus       187 ~G~~-----iC~~~~P~C~~Cp  203 (224)
T d1kg2a_         187 LGAM-----ICTRSKPKCSLCP  203 (224)
T ss_dssp             HHHH-----TSCSSSCCGGGCT
T ss_pred             HhHH-----HccCCCCCCCCCc
Confidence            9998     9999999998763