Citrus Sinensis ID: 026590

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MIISSKTATLTQNSSSMAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQDQAQITRRVSLGLASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cEEcccccEccccccccccHHcccccccccccccccccccccccccEEEEEEEccHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccEcccccccccccccccccccccHHHHHccEEcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
miissktatltqnSSSMAHLANLngvsetlpavpnlpkfqkfpkrAKIIGLlghkaenfqdqAQITRRVSLGLASLALIgststngvslaednglwvtgplpvppvynnianektgtRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMyydfdnvisaaaptdkqplTDLANRLFESFEKLEVAvstknfpqtqstyADTAVILHEVMDRMA
Flexible Loop (DISEMBL)
MIISSKTATLTQNSSSMAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQDQAQITRRVSLGLASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYianigtkgrihRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAvstknfpqtqstyadTAVILHEVMDRMA
Low Complexity Region (SEG)
MIISSKTATLTQNSSSMAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQDQAQITRRVslglaslaligststNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA
Disordered region (IsUnstruct)
*******************************AVPNLPKFQKFPKRAKIIGLLGHKAENFQDQAQITRRVSLGLASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHE******
Disordered Region (DISOPRED)
********TLTQNSSSMAHLANLNGVSETL****************************************LGLASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNV*************DLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA
Disordered Region (DISEMBL)
*************SSSMAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQDQAQITRRVSLGLASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA
Disordered Region (DISPRO)
MIISSKTATLTQNSSSMAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQDQAQITRRVSLGLASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIISSKTATLTQNSSSMAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQDQAQITRRVSLGLASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q9SGH4	220	PsbQ-like protein 2, chlo	yes	no	0.919	0.986	0.623	1e-78
Q9XFT3	224	Oxygen-evolving enhancer	no	no	0.741	0.781	0.276	8e-12
Q41932	230	Oxygen-evolving enhancer	no	no	0.716	0.734	0.287	9e-12
Q41806	213	Oxygen-evolving enhancer	N/A	no	0.504	0.558	0.278	2e-08
P12301	232	Oxygen-evolving enhancer	N/A	no	0.775	0.788	0.251	1e-07
Q41048	217	Oxygen-evolving enhancer	N/A	no	0.728	0.792	0.244	2e-07
O22591	231	Oxygen-evolving enhancer	N/A	no	0.724	0.740	0.28	4e-07
Q9XI73	190	PsbQ-like protein 1, chlo	no	no	0.538	0.668	0.259	3e-06
Q0D5P8	217	Oxygen-evolving enhancer	no	no	0.491	0.534	0.258	6e-06
P83646	217	Oxygen-evolving enhancer	N/A	no	0.491	0.534	0.258	6e-06

>sp|Q9SGH4|PQL2_ARATH PsbQ-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PQL2 PE=1 SV=1

 Score =  293 bits (749), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 139/223 (62%), Positives = 173/223 (77%), Gaps = 6/223 (2%)

Query: 17  MAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQ--DQAQITRRVSLGLA 74
           MAH  +LN ++ TLP++P LP+ +K  K +   G    + E FQ  D  QITRR++LG A
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSS---GFACRRTEEFQEPDSVQITRRMTLGFA 57

Query: 75  -SLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTK 133
            S+ L G    N VSLA+DNG W+ GPLP+PP+YNNI NEKTGTR+F+KK +Y+A+IGTK
Sbjct: 58  VSIGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 117

Query: 134 GRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTD 193
           GR++R+K+ AFDLLAM DLIGPDTLNYV+KYLRLKSTF++YDFDN+ISAAA  DKQPLTD
Sbjct: 118 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 177

Query: 194 LANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236
           LANRLF++FEKLE A  TKN  +T+S Y DT  +L EVM RMA
Sbjct: 178 LANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9XFT3|PSBQ1_ARATH Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3

 Score = 70.9 bits (172), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 6/181 (3%)

Query: 60  QDQAQITRRVSLGLASLALIGSTSTNGVSLAEDNGLWVTGPLPVP----PVYNNIANEKT 115
           Q   + +RR  +GL +  L G +    V LA+   + V GP P P    P   + +++  
Sbjct: 46  QQSEETSRRSVIGLVAAGLAGGSFVQAV-LADAISIKV-GPPPAPSGGLPAGTDNSDQAR 103

Query: 116 GTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYD 175
                LK   Y+  +       R K  A D++ +  LI      YV+  LR K++++ YD
Sbjct: 104 DFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYD 163

Query: 176 FDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRM 235
            + +IS+    +K+ L DL  +LF++ + L+ A   K+  Q +  YA+T   L+EV+ ++
Sbjct: 164 LNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

Query: 236 A 236
            
Sbjct: 224 G 224

Required for photosystem II assembly/stability and photoautotrophic growth under low light conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 5/174 (2%)

Query: 66  TRRVSLGLASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSF---LK 122
           +RR  +GL +  L G +    V  AE   + V GP P+P       +     R F   LK
Sbjct: 59  SRRSVIGLVAAGLAGGSFVKAV-FAEAIPIKVGGP-PLPSGGLPGTDNSDQARDFSLALK 116

Query: 123 KAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISA 182
              YI  +       R K  A +++ +   I      YV+  LRL+++++ YD + VISA
Sbjct: 117 DRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISA 176

Query: 183 AAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236
               +KQ L DL  +LF++ + L+ A  +K+ P  +  Y++T   L+ V+ ++ 
Sbjct: 177 KPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230

Required for photosystem II assembly/stability and photoautotrophic growth under low light conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41806|PSBQ2_MAIZE Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 117 TRSF---LKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMY 173
           TR F   LK+  Y+  +     + R+K  A D++ +  LI      YV+  LRL+++++ 
Sbjct: 91  TRDFDLPLKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLR 150

Query: 174 YDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMD 233
           YD   VI++    +K+ L +L  +LF + + L+ A   K+ P+ +  +A T   L +V+ 
Sbjct: 151 YDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLA 210

Query: 234 RM 235
           ++
Sbjct: 211 KL 212

Zea mays (taxid: 4577)

>sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 4/187 (2%)

Query: 52  LGHKAENFQDQAQITRRVSLGLASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIA 111
           L  +A+    +A+ +RR  LG  +  L   +    V LAE   + V  P P+        
Sbjct: 46  LNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAV-LAEARPIVVGPPPPLSGGLPGTE 104

Query: 112 NE---KTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLK 168
           N    + GT  + K   Y+  +       R K  A ++L +   I       ++  LRL+
Sbjct: 105 NSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLR 164

Query: 169 STFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVIL 228
           ++++ YD   VISA    +K+ L +L ++LF S + L+ A   K+  + +  Y  T   +
Sbjct: 165 ASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNI 224

Query: 229 HEVMDRM 235
           +EV+ ++
Sbjct: 225 NEVLAKL 231

Spinacia oleracea (taxid: 3562)

>sp|Q41048|PSBQ1_MAIZE Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 4/176 (2%)

Query: 63  AQITRRVSLGLASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSF-- 120
           AQ  RR  +GL +  ++G   +          + +  P P         N     R F  
Sbjct: 42  AQAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQA-RDFDL 100

Query: 121 -LKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNV 179
            LK+  Y+  +       R+K  A D++ +  LI      YV+  LRL+++++ YD   V
Sbjct: 101 PLKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTV 160

Query: 180 ISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRM 235
           I++    +K+ L +L  +LF + + L+ A   K+ P+ +  +A T   L +V+ ++
Sbjct: 161 IASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

Zea mays (taxid: 4577)

>sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 4/175 (2%)

Query: 64  QITRRVSLGLASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIAN--EKTGTRSFL 121
           Q  RR  LGL +  L  ++    V LAE   + V GP P         N  E    +  L
Sbjct: 57  QSNRRAMLGLVATGLASASFVQAV-LAEAKPIKVGGPPPPSGGLGGTLNSDEARDLKLPL 115

Query: 122 KKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVIS 181
           K+  YI  +       R +  A +++A+   I     +     LRL+++++ YD + VIS
Sbjct: 116 KERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVIS 175

Query: 182 AAAPTDKQPLTDL-ANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRM 235
           +     KQ L +  A +LF+  + L+ A   K+ PQ +  YAD    L++V+ ++
Sbjct: 176 SKPKEQKQSLKESSAGKLFQDIDNLDYAAKLKSAPQAEKYYADAVSTLNDVLSKI 230

Onobrychis viciifolia (taxid: 3882)

>sp|Q9XI73|PQL1_ARATH PsbQ-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PQL1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 62/127 (48%)

Query: 110 IANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKS 169
           +A EK GTRSF+K+  ++  +  +    R+K+ A  L  M +++   +  YV  Y+RLK 
Sbjct: 64  LAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQ 123

Query: 170 TFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILH 229
            ++  D  N ++    + +      AN L E+  +L+  V T    ++   Y  T   + 
Sbjct: 124 AYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSID 183

Query: 230 EVMDRMA 236
            V++ +A
Sbjct: 184 NVVEFLA 190

Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0D5P8|PSBQ_ORYSJ Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 58/116 (50%)

Query: 121 LKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVI 180
           L++  Y+  +       R K  A D++ +  LI      +VR  LRL+++++ YD   VI
Sbjct: 102 LRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVI 161

Query: 181 SAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236
           ++    +K+ L DL  +LF + + L+ A   K+  + +  Y  T   L +V+ ++ 
Sbjct: 162 NSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P83646|PSBQ_ORYSI Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 58/116 (50%)

Query: 121 LKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVI 180
           L++  Y+  +       R K  A D++ +  LI      +VR  LRL+++++ YD   VI
Sbjct: 102 LRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVI 161

Query: 181 SAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236
           ++    +K+ L DL  +LF + + L+ A   K+  + +  Y  T   L +V+ ++ 
Sbjct: 162 NSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
18395819	220	photosystem II oxygen-evolving enhancer	0.919	0.986	0.623	6e-77
21537394	220	unknown [Arabidopsis thaliana]	0.919	0.986	0.618	1e-76
255563649	224	Oxygen-evolving enhancer protein 3-1, ch	0.923	0.973	0.651	1e-75
224126283	236	predicted protein [Populus trichocarpa]	0.919	0.919	0.652	6e-73
297832798	220	oxygen evolving enhancer 3 family protei	0.919	0.986	0.596	9e-73
225461148	221	PREDICTED: oxygen-evolving enhancer prot	0.927	0.990	0.608	3e-71
449468510	215	PREDICTED: psbQ-like protein 2, chloropl	0.906	0.995	0.642	1e-70
388509182	247	unknown [Lotus japonicus]	0.927	0.886	0.565	4e-65
356543952	250	PREDICTED: oxygen-evolving enhancer prot	0.923	0.872	0.601	4e-64
357452665	230	Oxygen-evolving enhancer protein 3-1 [Me	0.923	0.947	0.571	1e-63

>gi|18395819|ref|NP_566137.1| photosystem II oxygen-evolving enhancer protein [Arabidopsis thaliana] gi|75204862|sp|Q9SGH4.1|PQL2_ARATH RecName: Full=PsbQ-like protein 2, chloroplastic; AltName: Full=Protein photosynthetic NDH subcomplex L 3; Flags: Precursor gi|6692264|gb|AAF24614.1|AC010870_7 hypothetical protein [Arabidopsis thaliana] gi|17979498|gb|AAL50085.1| AT3g01440/T13O15_8 [Arabidopsis thaliana] gi|20147295|gb|AAM10361.1| AT3g01440/T13O15_8 [Arabidopsis thaliana] gi|332640146|gb|AEE73667.1| photosystem II oxygen-evolving enhancer protein [Arabidopsis thaliana]

 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 139/223 (62%), Positives = 173/223 (77%), Gaps = 6/223 (2%)

Query: 17  MAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQ--DQAQITRRVSLGLA 74
           MAH  +LN ++ TLP++P LP+ +K  K +   G    + E FQ  D  QITRR++LG A
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSS---GFACRRTEEFQEPDSVQITRRMTLGFA 57

Query: 75  -SLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTK 133
            S+ L G    N VSLA+DNG W+ GPLP+PP+YNNI NEKTGTR+F+KK +Y+A+IGTK
Sbjct: 58  VSIGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 117

Query: 134 GRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTD 193
           GR++R+K+ AFDLLAM DLIGPDTLNYV+KYLRLKSTF++YDFDN+ISAAA  DKQPLTD
Sbjct: 118 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 177

Query: 194 LANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236
           LANRLF++FEKLE A  TKN  +T+S Y DT  +L EVM RMA
Sbjct: 178 LANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537394|gb|AAM61735.1| unknown [Arabidopsis thaliana]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 138/223 (61%), Positives = 173/223 (77%), Gaps = 6/223 (2%)

Query: 17  MAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQ--DQAQITRRVSLGLA 74
           MAH  +LN ++ TLP++P LP+ +K  K +   G    + E FQ  D  QITRR++LG A
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSS---GFACRRTEEFQEPDSVQITRRMTLGFA 57

Query: 75  -SLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTK 133
            S+ L G    N VSLA+DNG W+ GPLP+PP+YNNI NEKTGTR+F+KK +Y+A+IGTK
Sbjct: 58  VSIGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 117

Query: 134 GRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTD 193
           GR++R+K+ AFDLLAM DLIGPDTLNYV+KYLRLKSTF++YDFDN+ISAAA  DKQPLTD
Sbjct: 118 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 177

Query: 194 LANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236
           LAN+LF++FEKLE A  TKN  +T+S Y DT  +L EVM RMA
Sbjct: 178 LANKLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563649|ref|XP_002522826.1| Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis] gi|223537910|gb|EEF39524.1| Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 144/221 (65%), Positives = 174/221 (78%), Gaps = 3/221 (1%)

Query: 17  MAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQDQA-QITRRVSLGLAS 75
           MAHLANLNG+SE  PA+P +   Q+  +RA IIGLLG K  N+++   Q TRR++LGLAS
Sbjct: 1   MAHLANLNGISENCPAIPKITNKQRTKRRANIIGLLGKKQVNYEEHPLQTTRRLALGLAS 60

Query: 76  LALIGSTSTNGVSLAEDNGLW-VTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKG 134
           +ALIG+ S NGVS AEDNG W +  PL VP V N +ANEKTGTRSFLKK IY+A+IG KG
Sbjct: 61  VALIGN-SGNGVSHAEDNGFWQLDFPLIVPSVDNKLANEKTGTRSFLKKGIYMADIGVKG 119

Query: 135 RIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDL 194
            ++R+++  FDLLA+ DLIGPDTLNYVRKYLRLKSTFMYYDFD VISAA  +DKQ LTDL
Sbjct: 120 SMYRIRKCGFDLLALEDLIGPDTLNYVRKYLRLKSTFMYYDFDKVISAAPVSDKQSLTDL 179

Query: 195 ANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRM 235
           AN+LF++FE+LE A   KN P+T+ +Y  T VIL EVMDRM
Sbjct: 180 ANKLFDNFEELEDASRRKNLPETELSYQGTKVILQEVMDRM 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126283|ref|XP_002319801.1| predicted protein [Populus trichocarpa] gi|222858177|gb|EEE95724.1| predicted protein [Populus trichocarpa]

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 143/219 (65%), Positives = 166/219 (75%), Gaps = 2/219 (0%)

Query: 17  MAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQDQA-QITRRVSLGLAS 75
           MAHL NLNGV+ETLPA+P L   QK  +R KI GLLG K  N Q  + Q TRR++LGLAS
Sbjct: 1   MAHLTNLNGVTETLPAIPKLINVQKPQRRMKITGLLGKKPVNLQGNSFQTTRRLALGLAS 60

Query: 76  LALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKGR 135
           +ALIG+ ST GVSLAEDN      PLPVP   N +ANE+TGTRSFLKK IY+AN+G +G 
Sbjct: 61  IALIGNPST-GVSLAEDNWWARDIPLPVPSAENKLANEETGTRSFLKKGIYMANVGLQGS 119

Query: 136 IHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLA 195
             R+KRYAFDLLA+ DLIGPDTLNYVRKYLR+KSTFMYYD D +ISA    DKQPLTDLA
Sbjct: 120 ARRVKRYAFDLLALEDLIGPDTLNYVRKYLRIKSTFMYYDLDRIISAVPVDDKQPLTDLA 179

Query: 196 NRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDR 234
           NRLF++FEKLE A   KN   T+S+Y DT  +L EVM +
Sbjct: 180 NRLFDNFEKLEDASRRKNLSDTKSSYRDTKALLQEVMQQ 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832798|ref|XP_002884281.1| oxygen evolving enhancer 3 family protein [Arabidopsis lyrata subsp. lyrata] gi|297330121|gb|EFH60540.1| oxygen evolving enhancer 3 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 133/223 (59%), Positives = 169/223 (75%), Gaps = 6/223 (2%)

Query: 17  MAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQ--DQAQITRRVSLGLA 74
           MAH  +LN ++ T P + NL + +K  K     G    ++E FQ  D    TRR++LG A
Sbjct: 1   MAHFLDLNSLTNTSPLITNLSENRKTGKSG---GFACRRSEEFQEPDSLHFTRRLTLGFA 57

Query: 75  -SLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTK 133
            S+ L G    + VSLA+DNG W+ GPLP+PP+YNNI NEKTGTR+F+KK +Y+A+IGTK
Sbjct: 58  VSIGLTGILGESNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 117

Query: 134 GRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTD 193
           GR++R+K+ AFDLLAM DLIGPDTLNYV+KYLRLKSTF++YDFDN+ISAAA  DKQPLTD
Sbjct: 118 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 177

Query: 194 LANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236
           LANRLF++FEKLE A  TKN  +T+S Y +T ++L EVM RMA
Sbjct: 178 LANRLFDNFEKLEDAAKTKNLAETESCYKNTKILLQEVMTRMA 220

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461148|ref|XP_002282744.1| PREDICTED: oxygen-evolving enhancer protein 3-1, chloroplastic [Vitis vinifera] gi|147768263|emb|CAN78127.1| hypothetical protein VITISV_028757 [Vitis vinifera] gi|302143202|emb|CBI20497.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 135/222 (60%), Positives = 169/222 (76%), Gaps = 3/222 (1%)

Query: 17  MAHLANLNGVSETLPAVPNL-PKFQKFPKRAKIIGLLGHKAENFQDQA-QITRRVSLGLA 74
           MAHLANL+G SETLP++  L    ++  KR  IIG L  KAE  Q+Q+ Q TRR +LGL+
Sbjct: 1   MAHLANLHGASETLPSIFKLRGDLRRTRKRVTIIGFLCKKAEQIQEQSFQATRRSALGLS 60

Query: 75  SLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKG 134
           S+A++G++   G +LAEDNG W+TGPLPVP V N+I N++TGTRSFLKK +YIA++GTKG
Sbjct: 61  SIAILGNSGI-GPALAEDNGYWLTGPLPVPTVDNDIVNKETGTRSFLKKGLYIADVGTKG 119

Query: 135 RIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDL 194
           R+ RLK+YAFDL+A+ DL+  D  NY  KYLRLKSTFMYYDFD +ISA    +KQPLTDL
Sbjct: 120 RMLRLKKYAFDLIALEDLMDKDAWNYFTKYLRLKSTFMYYDFDKLISAVPVDEKQPLTDL 179

Query: 195 ANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236
           ANRLF+  EKLE AV  ++  QT+S Y DT  +L EVMDRMA
Sbjct: 180 ANRLFDCVEKLEDAVKIRDISQTESRYKDTKTVLQEVMDRMA 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468510|ref|XP_004151964.1| PREDICTED: psbQ-like protein 2, chloroplastic-like [Cucumis sativus] gi|449526650|ref|XP_004170326.1| PREDICTED: psbQ-like protein 2, chloroplastic-like [Cucumis sativus]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/221 (64%), Positives = 160/221 (72%), Gaps = 7/221 (3%)

Query: 17  MAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQDQAQITRRVSL-GLAS 75
           MA LANLNG      A+PNLPK Q   KR KI G L  + +    Q  +TRR++L  L S
Sbjct: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 57

Query: 76  LALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKGR 135
           +AL G+ S     +A  N  W+ GPLPVP V NNI NE+TGTRSFLK  IYIANIGTKGR
Sbjct: 58  VALFGNASP---EIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGR 114

Query: 136 IHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLA 195
            +RLK+YAFDLLAMADLIG DTLNYVRKYLRLKSTFMYYDFD VISAAA  +KQPL DLA
Sbjct: 115 KYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLA 174

Query: 196 NRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236
           NRLF++FEKLE A   KN  +T+S Y  T  IL EVMDRMA
Sbjct: 175 NRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509182|gb|AFK42657.1| unknown [Lotus japonicus]

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 126/223 (56%), Positives = 162/223 (72%), Gaps = 4/223 (1%)

Query: 15  SSMAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQD-QAQITRRVS-LG 72
           ++MA L NL+GVS+ L  +  LP   +  +R  ++G LG K++ F +   Q TRR + + 
Sbjct: 18  TTMAPLTNLHGVSKNLTPITCLPNVHRTLRRGHVVGFLGRKSQEFSECSVQSTRRAAAIS 77

Query: 73  LASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGT 132
            A+L L G    N VSLA DNG W+ GPLP P V N IANEKTGTRSFLKK +Y+ANIG 
Sbjct: 78  FATLLLTGQFKDN-VSLA-DNGFWIDGPLPEPIVINKIANEKTGTRSFLKKRLYMANIGV 135

Query: 133 KGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLT 192
           KG ++R+K+YAFDLLAMADL+  DTLNYVR+YLRLKSTFMY+DFD VISA    +KQ LT
Sbjct: 136 KGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHDFDKVISATPVDEKQQLT 195

Query: 193 DLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRM 235
           D+AN+LF++FEKLE A   KN  +T+S Y ++ ++L EVMDRM
Sbjct: 196 DMANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKEVMDRM 238

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543952|ref|XP_003540422.1| PREDICTED: oxygen-evolving enhancer protein 3-1, chloroplastic-like [Glycine max]

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 136/226 (60%), Positives = 165/226 (73%), Gaps = 8/226 (3%)

Query: 17  MAHLANLNG-VSETL-PAVPNLPKFQK-FPKRAKIIGLLGHKA--ENFQDQAQITRRVS- 70
           MA + NL+G VS+TL P   +LP   K   KR ++IG LG KA  E  + Q Q TRR + 
Sbjct: 19  MAPVTNLHGAVSKTLIPITCHLPNAHKSITKRGQVIGFLGSKAQKEASECQVQATRRAAA 78

Query: 71  LGLASLALIGSTSTNGVSLAEDNGLWVTG-PLPVPPVYNNIANEKTGTRSFLKKAIYIAN 129
           LGLA++ L    + + VSLA+DNG W    PLP P V NNIANEKTGTRSFLK+ +YIAN
Sbjct: 79  LGLATVVLTWQFN-DKVSLAKDNGFWYEDHPLPGPTVTNNIANEKTGTRSFLKRGLYIAN 137

Query: 130 IGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQ 189
           IG KG + R+K+YAFDLLAMADLI  DTLNYVRKYLRLKSTFMYYDFD VISA    DKQ
Sbjct: 138 IGVKGSVFRIKKYAFDLLAMADLIAEDTLNYVRKYLRLKSTFMYYDFDKVISAIPVDDKQ 197

Query: 190 PLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRM 235
            LTD+AN+LF++FE+LE A   K+ P+T+S Y +T V+L EVMD+M
Sbjct: 198 QLTDMANKLFDNFERLEEASRKKSLPETKSCYQETEVMLKEVMDKM 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452665|ref|XP_003596609.1| Oxygen-evolving enhancer protein 3-1 [Medicago truncatula] gi|355485657|gb|AES66860.1| Oxygen-evolving enhancer protein 3-1 [Medicago truncatula]

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 160/224 (71%), Gaps = 6/224 (2%)

Query: 17  MAHLANLNGVSETL-PAVPNLPKFQK-FPKRAKIIGLLGHKAENFQDQAQI--TRRVS-L 71
           MA L NL+GVS+TL P    +P  Q+ F     ++G LG K +   +   +  TRR + +
Sbjct: 1   MAPLTNLHGVSKTLTPITCLVPNAQRTFKTGQVVVGFLGSKTKKISECESVNTTRRAAAI 60

Query: 72  GLASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIG 131
            L SL L G  S   +SLA+DNG W+ GP+P P V NNIANEKTGTRSF+KK +Y+ANIG
Sbjct: 61  SLVSLVLTGQFS-EKISLAKDNGFWIDGPIPEPTVTNNIANEKTGTRSFIKKKLYMANIG 119

Query: 132 TKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPL 191
            KG + R+K+YAFDLLAMADLI  DTLNYVR+YLRLKSTFMY+DFD VISA    DKQ L
Sbjct: 120 AKGSVLRIKKYAFDLLAMADLIAQDTLNYVRRYLRLKSTFMYFDFDKVISAVPVEDKQQL 179

Query: 192 TDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRM 235
           TD+AN+LF++FEKLE A   KN  +TQ+ Y +T V+L +VMDRM
Sbjct: 180 TDVANKLFDNFEKLEEASRNKNLLETQACYKETEVMLKDVMDRM 223

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2096707	220	PnsL3 "Photosynthetic NDH subc	0.919	0.986	0.596	3.1e-67
TAIR|locus:2127393	224	PSBQA "photosystem II subunit	0.580	0.611	0.276	4.5e-11
TAIR|locus:2115703	230	PSBQ-2 "photosystem II subunit	0.614	0.630	0.288	1.1e-10
TAIR|locus:2035775	190	PnsL2 "Photosynthetic NDH subc	0.538	0.668	0.259	9.4e-09
UNIPROTKB|P83646	217	OsI_025465 "Oxygen-evolving en	0.576	0.626	0.262	7.3e-06

TAIR|locus:2096707 PnsL3 "Photosynthetic NDH subcomplex L 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 133/223 (59%), Positives = 165/223 (73%)

Query:    17 MAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQ--DQAQITRRVXXXXX 74
             MAH  +LN ++ TLP++P LP+ +K  K +   G    + E FQ  D  QITRR+     
Sbjct:     1 MAHFIDLNSLTNTLPSLPKLPESRKTGKSS---GFACRRTEEFQEPDSVQITRRMTLGFA 57

Query:    75 XXXXXXXXXX-NGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTK 133
                        N VSLA+DNG W+ GPLP+PP+YNNI NEKTGTR+F+KK +Y+A+IGTK
Sbjct:    58 VSIGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 117

Query:   134 GRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTD 193
             GR++R+K+ AFDLLAM DLIGPDTLNYV+KYLRLKSTF++YDFDN+ISAAA  DKQPLTD
Sbjct:   118 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 177

Query:   194 LANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236
             LANRLF++FEKLE A  TKN  +T+S Y DT  +L EVM RMA
Sbjct:   178 LANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;TAS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IMP

GO:0009344 "nitrite reductase complex [NAD(P)H

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2127393 PSBQA "photosystem II subunit QA" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 39/141 (27%), Positives = 70/141 (49%)

Query:    99 GPLPVP----PVYNNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIG 154
             GP P P    P   + +++       LK   Y+  +       R K  A D++ +  LI 
Sbjct:    83 GPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLID 142

Query:   155 PDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNF 214
                  YV+  LR K++++ YD + +IS+    +K+ L DL  +LF++ + L+ A   K+ 
Sbjct:   143 RKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSP 202

Query:   215 PQTQSTYADTAVILHEVMDRM 235
              Q +  YA+T   L+EV+ ++
Sbjct:   203 SQAEKYYAETVSALNEVLAKL 223

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2115703 PSBQ-2 "photosystem II subunit Q-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 43/149 (28%), Positives = 73/149 (48%)

Query:    90 AEDNGLWVTGPLPVPPVYNNIANEKTGTRSF---LKKAIYIANIGTKGRIHRLKRYAFDL 146
             AE   + V GP P+P       +     R F   LK   YI  +       R K  A ++
Sbjct:    82 AEAIPIKVGGP-PLPSGGLPGTDNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEI 140

Query:   147 LAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLE 206
             + +   I      YV+  LRL+++++ YD + VISA    +KQ L DL  +LF++ + L+
Sbjct:   141 INVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLD 200

Query:   207 VAVSTKNFPQTQSTYADTAVILHEVMDRM 235
              A  +K+ P  +  Y++T   L+ V+ ++
Sbjct:   201 YAARSKSSPDAEKYYSETVSSLNNVLAKL 229

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2035775 PnsL2 "Photosynthetic NDH subcomplex L 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 9.4e-09, P = 9.4e-09
 Identities = 33/127 (25%), Positives = 62/127 (48%)

Query:   110 IANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKS 169
             +A EK GTRSF+K+  ++  +  +    R+K+ A  L  M +++   +  YV  Y+RLK 
Sbjct:    64 LAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQ 123

Query:   170 TFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILH 229
              ++  D  N ++    + +      AN L E+  +L+  V T    ++   Y  T   + 
Sbjct:   124 AYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSID 183

Query:   230 EVMDRMA 236
              V++ +A
Sbjct:   184 NVVEFLA 190

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IMP

GO:0009344 "nitrite reductase complex [NAD(P)H

GO:0006098 "pentose-phosphate shunt" evidence=RCA

UNIPROTKB|P83646 OsI_025465 "Oxygen-evolving enhancer protein 3, chloroplastic" [Oryza sativa Indica Group (taxid:39946)]

 Score = 122 (48.0 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 37/141 (26%), Positives = 68/141 (48%)

Query:    99 GPLPVP----PVYNNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIG 154
             GP P P    P   N +++   T   L++  Y+  +       R K  A D++ +  LI 
Sbjct:    77 GPPPPPSGGLPGTLN-SDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIE 135

Query:   155 PDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNF 214
                  +VR  LRL+++++ YD   VI++    +K+ L DL  +LF + + L+ A   K+ 
Sbjct:   136 KKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSP 195

Query:   215 PQTQSTYADTAVILHEVMDRM 235
              + +  Y  T   L +V+ ++
Sbjct:   196 EEAEKYYTLTKSALGDVLAKL 216


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       221   0.00095  112 3  11 22  0.38    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  147 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.18u 0.19s 17.37t   Elapsed:  00:00:01
  Total cpu time:  17.18u 0.19s 17.37t   Elapsed:  00:00:01
  Start:  Fri May 10 21:04:21 2013   End:  Fri May 10 21:04:22 2013

GO:0009536 "plastid" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SGH4	PQL2_ARATH	No assigned EC number	0.6233	0.9194	0.9863	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
PLN02729	220	PLN02729, PLN02729, PSII-Q subunit	1e-126
pfam05757	203	pfam05757, PsbQ, Oxygen evolving enhancer protein	2e-45
PLN02999	190	PLN02999, PLN02999, photosystem II oxygen-evolving	1e-08
PLN02956	185	PLN02956, PLN02956, PSII-Q subunit	4e-04

>gnl|CDD|215388 PLN02729, PLN02729, PSII-Q subunit

 Score =  354 bits (911), Expect = e-126
 Identities = 159/221 (71%), Positives = 184/221 (83%), Gaps = 2/221 (0%)

Query: 17  MAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQDQA-QITRRVSLGLAS 75
           MAHLANLNG++ETLPA+P L   Q+  KR KIIG L  KAENFQ+ + Q TRR++LGLAS
Sbjct: 1   MAHLANLNGLTETLPAIPKLRNLQRTRKRGKIIGFLCKKAENFQEDSFQTTRRLALGLAS 60

Query: 76  LALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKGR 135
           +ALIG+ S NGVSLAEDNG W+ GPLPVP V N I NEKTGTRSFLKK IY+A+IGTKGR
Sbjct: 61  IALIGN-SGNGVSLAEDNGFWLDGPLPVPSVDNKIVNEKTGTRSFLKKGIYMADIGTKGR 119

Query: 136 IHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLA 195
           ++R+K+YAFDLLA+ DLIGPDTLNYVRKYLRLKSTFMYYDFD +ISAA   DKQPLTDLA
Sbjct: 120 MYRVKKYAFDLLALEDLIGPDTLNYVRKYLRLKSTFMYYDFDKLISAAPVDDKQPLTDLA 179

Query: 196 NRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236
           NRLF++FEKLE A   KN  +T+S+Y DT  +L EVMDRMA
Sbjct: 180 NRLFDNFEKLEDASKRKNLSETESSYKDTKTLLQEVMDRMA 220

Length = 220

>gnl|CDD|191366 pfam05757, PsbQ, Oxygen evolving enhancer protein 3 (PsbQ)

 Score =  149 bits (379), Expect = 2e-45
 Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 8/199 (4%)

Query: 43  PKRAKIIGLLGHKAENFQDQAQITRRVSLG-LASLALIGSTSTNGVSLAEDNGLWVTGPL 101
            + A     L  +A     + Q +RR  LG L +  L G       + A      +   L
Sbjct: 8   SRVATRRSGLVVRASAEPAEPQTSRRAVLGGLVATGLAGGAFAQAAAAA---AKPIKVGL 64

Query: 102 PVPPVYN-NIANEKTGTRSF---LKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDT 157
           P PP       +     R F   LK+  Y+  +  +    R K  A D+L + + I    
Sbjct: 65  PPPPSGGLPGTDNSDEARDFDLPLKERFYLQPLSPEEAAARAKESAKDILDLKEFIDKKA 124

Query: 158 LNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQT 217
             YVR YLRLK+ ++ YD + +ISA    +K+ L DLAN+LF++ E L+ A  TK+  + 
Sbjct: 125 WPYVRNYLRLKAGYLRYDLNTLISAKPKEEKKSLKDLANKLFDNIENLDFAARTKDVYEA 184

Query: 218 QSTYADTAVILHEVMDRMA 236
           +  Y  T   L EV+ ++A
Sbjct: 185 EKYYEKTKSSLDEVLAKLA 203

This family consists of the plant specific oxygen evolving enhancer protein 3 (PsbQ). Photosystem II (PSII)1 is a pigment-protein complex, which consists of at least 25 different protein subunits, at present denoted PsbA-Z according to the genes that encode them. PsbQ plays an important role in the lumenal oxygen-evolving activity of PSII from higher plants and green algae. Length = 203

>gnl|CDD|178577 PLN02999, PLN02999, photosystem II oxygen-evolving enhancer 3 protein (PsbQ)

 Score = 52.9 bits (126), Expect = 1e-08
 Identities = 33/127 (25%), Positives = 62/127 (48%)

Query: 110 IANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKS 169
           +A EK GTRSF+K+  ++  +  +    R+K+ A  L  M +++   +  YV  Y+RLK 
Sbjct: 64  LAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQ 123

Query: 170 TFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILH 229
            ++  D  N ++    + +      AN L E+  +L+  V T    ++   Y  T   + 
Sbjct: 124 AYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDYYVRTPKVYESYLYYEKTLKSID 183

Query: 230 EVMDRMA 236
            V++ +A
Sbjct: 184 NVVELLA 190

Length = 190

>gnl|CDD|215515 PLN02956, PLN02956, PSII-Q subunit

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 24/97 (24%), Positives = 45/97 (46%)

Query: 139 LKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRL 198
           ++ +A +LL +  LI  ++    +K LR  ++ +  D   +I A    D+  L  L + L
Sbjct: 89  VRGHAENLLRVKALIESESWKEAQKALRRSASNLKQDLYAIIQAKPGKDRPQLRRLYSDL 148

Query: 199 FESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRM 235
           F S  KL+ A   K+  +    Y +    L ++  R+
Sbjct: 149 FNSVTKLDYAARDKDETRVWEYYENIVASLDDIFSRI 185

Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
PLN02729	220	PSII-Q subunit	100.0
PF05757	202	PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); I	100.0
PLN02999	190	photosystem II oxygen-evolving enhancer 3 protein	100.0
PLN02956	185	PSII-Q subunit	100.0
TIGR03042	142	PS_II_psbQ_bact photosystem II protein PsbQ. This	99.95
PF13413	62	HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_	80.26

>PLN02729 PSII-Q subunit

Probab=100.00  E-value=4.4e-86  Score=577.33  Aligned_cols=219  Identities=73%  Similarity=1.118  Sum_probs=213.7

Q ss_pred             hhhhhcccCccCCCCcccCCCCCCCCccceeeeeeeeecccccchhh-hhhhhHHHHHHHHHHhcccccccccccccCCc
Q 026590           17 MAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQDQA-QITRRVSLGLASLALIGSTSTNGVSLAEDNGL   95 (236)
Q Consensus        17 ma~~a~l~g~s~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~RR~~lgL~a~~l~~~~~~~~~~~a~~~~~   95 (236)
                      |||++||||+|+|+|.|++|.+.++++++++++||+|+++.|+++++ +++||++|||+|+||+|+ +++|+++|+++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~rr~~lgl~a~~l~~~-s~~~~~~A~~~~i   79 (220)
T PLN02729          1 MAHLANLNGLTETLPAIPKLRNLQRTRKRGKIIGFLCKKAENFQEDSFQTTRRLALGLASIALIGN-SGNGVSLAEDNGF   79 (220)
T ss_pred             CcchhcccccccccccchhhhcchhhhhhhhhhhHhhhhhhhcccchhhhhHHHHHHHHHHHHhcc-hhhhHHHhcccCc
Confidence            99999999999999999999999999999999999999999999877 999999999999999999 6799999999999


Q ss_pred             eecCCCCCCccCCcccccCcchhhHHHHhhhhcCCChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhh
Q 026590           96 WVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYD  175 (236)
Q Consensus        96 ~~~~p~P~ps~~n~~~~~~~gtr~~lkerf~~~~ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~D  175 (236)
                      |+.|||||||+.|+++|++||||||||||||+||++|+||++|||+||++|++||+|||+++|+|||+|||+|++|||||
T Consensus        80 ~~~~P~P~pst~n~~~~e~~gtRsfLKerfy~~~l~p~~aa~RiK~sA~dLl~vKdLId~~sW~yVq~~LRLKAsyL~yD  159 (220)
T PLN02729         80 WLDGPLPVPSVDNKIVNEKTGTRSFLKKGIYMADIGTKGRMYRVKKYAFDLLALEDLIGPDTLNYVRKYLRLKSTFMYYD  159 (220)
T ss_pred             eeCCCCCCCccccccccccchHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHH
Confidence            95555599999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhcC
Q 026590          176 FDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA  236 (236)
Q Consensus       176 L~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlaki~  236 (236)
                      |++||+++|++|||+|++|+|+||++|++||||||+||++++++||++|+++|||||+|||
T Consensus       160 L~tvIsskP~~eKk~L~~LankLFdn~~eLD~AaR~Ks~~eae~yY~~Tv~aLdeVl~k~~  220 (220)
T PLN02729        160 FDKLISAAPVDDKQPLTDLANRLFDNFEKLEDASKRKNLSETESSYKDTKTLLQEVMDRMA  220 (220)
T ss_pred             HHHHhccCChhhhHHHHHHHHHHHhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999996

>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=1.3e-63  Score=434.53  Aligned_cols=194  Identities=34%  Similarity=0.524  Sum_probs=105.8

Q ss_pred             CCCCccceeeeeeeeecccccchhhhhhhhHHHH-HHHHHHhcccccccccccccCCcee-cCCCCCCccCCcccccCcc
Q 026590           39 FQKFPKRAKIIGLLGHKAENFQDQAQITRRVSLG-LASLALIGSTSTNGVSLAEDNGLWV-TGPLPVPPVYNNIANEKTG  116 (236)
Q Consensus        39 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~RR~~lg-L~a~~l~~~~~~~~~~~a~~~~~~~-~~p~P~ps~~n~~~~~~~g  116 (236)
                      .++.+++....+++||+++ .+++.+++||++|| |+|++++++ +++++++|+  ++|+ +||||||+++++|+++.||
T Consensus         4 ~~~~~~~~~r~~~~vra~~-~~~~~~~~RRa~l~~l~a~~~~~~-~~~~~~~a~--~~~~~~~~~~p~~~~~~g~~~~~~   79 (202)
T PF05757_consen    4 TSSSRVASRRAGVVVRASQ-SPAQQQTSRRAVLGSLLAAALAGG-SFAQAAAAA--AWAIKVGLPPPPSGNLPGTNNSDG   79 (202)
T ss_dssp             ---------------------------------------------------------S-EE-------------------
T ss_pred             CcCCccccccccceecccc-CcccccccHHHHHHHHHHHHHHhh-hcccccccc--hhhhccCCCCCCCCCCCCcccccc
Confidence            3445566788889999987 34455899999998 999999998 667888887  4666 9999999998899999999


Q ss_pred             hhhH---HHHhhhhcCCChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHH
Q 026590          117 TRSF---LKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTD  193 (236)
Q Consensus       117 tr~~---lkerf~~~~ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~  193 (236)
                      ||||   +|+|||+|+++|+||++|||+||++|+.|++|||+++|+|||+|||+|++||||||++||+++|+++||+|++
T Consensus        80 aRd~~l~lk~rf~~~~l~~~ea~~Rik~sa~~L~~lk~lIdk~sW~~v~~~LRlka~~Lr~DL~~liss~p~~~kk~l~~  159 (202)
T PF05757_consen   80 ARDFDLPLKERFYIQPLSPEEAAARIKESAKRLLSLKELIDKKSWPYVRNYLRLKAGYLRYDLNTLISSKPKDEKKALTD  159 (202)
T ss_dssp             --------TT--EE----CCCHHHHHHHHHHHHCCCHHHHHTT-HHHHHHHHHCCCCCHHHHHHHHHCCS-HHHHHHHHH
T ss_pred             ccccccchhhceecCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999   9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhcC
Q 026590          194 LANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA  236 (236)
Q Consensus       194 LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlaki~  236 (236)
                      |+|+||++||+||||+|+||.+++++||++|+++|||||++||
T Consensus       160 La~~lf~~ie~LD~Aar~K~~~~a~~~Y~~t~~~Ldevla~la  202 (202)
T PF05757_consen  160 LANKLFDNIEELDYAARSKDVPEAEKYYADTVKALDEVLAKLA  202 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHCCH-
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999986

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.

>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)

Probab=100.00  E-value=5.2e-56  Score=381.22  Aligned_cols=177  Identities=24%  Similarity=0.365  Sum_probs=156.1

Q ss_pred             cccCCCCCCCCc-cceeeeeeeeecccccchhhhhhhhHHHH-HHHHHHhcccccccccccccCCceecCCCCCCccCCc
Q 026590           32 AVPNLPKFQKFP-KRAKIIGLLGHKAENFQDQAQITRRVSLG-LASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNN  109 (236)
Q Consensus        32 ~~~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~RR~~lg-L~a~~l~~~~~~~~~~~a~~~~~~~~~p~P~ps~~n~  109 (236)
                      +.....+.|... +..+++++.+..+|     ..++||.++. +.++.++|++ ++.++                     
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~rr~~~~~~l~~~~~~~~-~~~~~---------------------   64 (190)
T PLN02999         12 PYLLRKIYHRRVNQPFSVVCCTGEPQQ-----DIFTRRRTLTSLITFTVIGGA-TSSAL---------------------   64 (190)
T ss_pred             cccccccccccccCcchhhhcCCCchh-----hhHHHHHHHHHHHHHHHHhhc-cCcHH---------------------
Confidence            433334444444 56888888888754     4567998885 8999998883 33222                     


Q ss_pred             ccccCcchhhHHHHhhhhcCCChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCCh
Q 026590          110 IANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQ  189 (236)
Q Consensus       110 ~~~~~~gtr~~lkerf~~~~ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK  189 (236)
                       .+|+||||||||||||+||++|+||++|||++|++|++||+|||+++|+|||+|||++++||+|||+++|+++|++||+
T Consensus        65 -~~e~~GtRsfLKerfy~p~lspeeAaaRiK~sA~dLl~vK~LId~~aW~YVq~~LRlkasyLryDL~tiIsskP~~eK~  143 (190)
T PLN02999         65 -AQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRN  143 (190)
T ss_pred             -HHhhhhhHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhH
Confidence             3388999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhcC
Q 026590          190 PLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA  236 (236)
Q Consensus       190 ~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlaki~  236 (236)
                      +|++|+++|||||++||||||+||++|+++||++||++||||++.+|
T Consensus       144 ~L~~LankLFdnvt~LDyAAR~K~~~eae~yY~~Tv~slddVl~~l~  190 (190)
T PLN02999        144 DYVQAANELVENMSELDYYVRTPKVYESYLYYEKTLKSIDNVVELLA  190 (190)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999875

>PLN02956 PSII-Q subunit

Probab=100.00  E-value=5.2e-41  Score=289.13  Aligned_cols=112  Identities=21%  Similarity=0.288  Sum_probs=110.8

Q ss_pred             hhhhcCCChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHH
Q 026590          124 AIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFE  203 (236)
Q Consensus       124 rf~~~~ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le  203 (236)
                      |||+|+++||||++|||++|++|++||+||++++|+|||||||+|++||+|||++||+++|++|||++++|+++||++|+
T Consensus        74 ~~~~p~~speeA~ar~k~~A~~l~~LK~LI~k~~W~yvrn~LRgp~s~Lr~DL~~Ii~slpp~Drk~a~~La~~LFd~l~  153 (185)
T PLN02956         74 RLTAPERTVEEAESGVRGHAENLLRVKALIESESWKEAQKALRRSASNLKQDLYAIIQAKPGKDRPQLRRLYSDLFNSVT  153 (185)
T ss_pred             eecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccHHHHHHHHHHHHHhcCHhHhHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHHHhhc
Q 026590          204 KLEVAVSTKNFPQTQSTYADTAVILHEVMDRM  235 (236)
Q Consensus       204 ~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlaki  235 (236)
                      +||||||+||.+++++||++|+++||+||+||
T Consensus       154 ~LD~AAR~kd~~~a~k~Y~~tva~lD~Vl~~i  185 (185)
T PLN02956        154 KLDYAARDKDETRVWEYYENIVASLDDIFSRI  185 (185)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999997

>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ

Probab=99.95  E-value=3.9e-28  Score=202.45  Aligned_cols=103  Identities=18%  Similarity=0.261  Sum_probs=98.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCC
Q 026590          133 KGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTK  212 (236)
Q Consensus       133 ~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~K  212 (236)
                      ++-+.+|.+.+++|.+|++||++++|++|||+||+++|+||+||++||+++|+++||++++|+++||+++++||+||+.|
T Consensus        39 ~~~~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~AA~~k  118 (142)
T TIGR03042        39 QRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEAARLQ  118 (142)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhc
Q 026590          213 NFPQTQSTYADTAVILHEVMDRM  235 (236)
Q Consensus       213 n~~~a~~~Y~~Tv~~LdeVlaki  235 (236)
                      |.+++++||++++++||+.+.-|
T Consensus       119 d~~~a~k~Y~~av~~~dafl~~~  141 (142)
T TIGR03042       119 DGPQAQKAYQKAAADFDAYLDLL  141 (142)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999988765

This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.

>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A

Probab=80.26  E-value=3.9  Score=29.55  Aligned_cols=58  Identities=22%  Similarity=0.208  Sum_probs=42.0

Q ss_pred             HHhhhhcCCChhHHHHHHHHHHHHHHHhh--hhcCCCChHHHHHHhhhcccchhhhHHHH
Q 026590          122 KKAIYIANIGTKGRIHRLKRYAFDLLAMA--DLIGPDTLNYVRKYLRLKSTFMYYDFDNV  179 (236)
Q Consensus       122 kerf~~~~ls~~ea~~RiK~sA~~L~~lk--dLId~~sW~yVr~yLRlka~~Lr~DL~tl  179 (236)
                      |+.=-..++|.++...++|=...-|.++|  ++=.-..+.|++.|||.=+.+|.-|-+.|
T Consensus         3 r~~R~~~glsl~~va~~t~I~~~~l~aiE~~~~~~lp~~~y~rg~lr~Ya~~Lgld~~~l   62 (62)
T PF13413_consen    3 REAREAKGLSLEDVAEETKISVSYLEAIENGDFDSLPSPVYARGYLRKYARFLGLDPDEL   62 (62)
T ss_dssp             HHHHHCTT--HHHHHHHCS--HHHHHHHHCT-GCCSSSHHHHHHHHHHHHHHTT--HHHH
T ss_pred             HHHHHHcCCCHHHHHHHhCCCHHHHHHHHCcChhhCCcHHHHHHHHHHHHHHhCcCcccC
Confidence            33344578999999999999999999999  34455689999999999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	236
1nze_A	149	Crystal Structure Of Psbq Polypeptide Of Photosyste		3e-07

>pdb|1NZE|A Chain A, Crystal Structure Of Psbq Polypeptide Of Photosystem Ii From Higher Plants Length = 149

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 61/128 (47%)
Query: 109 NIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLK 168
           N    + GT  + K   Y+  +       R K  A ++L +   I       ++  LRL+
Sbjct: 22  NSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLR 81
Query: 169 STFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVIL 228
           ++++ YD   VISA    +K+ L +L ++LF S + L+ A   K+  + +  Y  T   +
Sbjct: 82  ASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNI 141
Query: 229 HEVMDRMA 236
           +EV+ ++ 
Sbjct: 142 NEVLAKLG 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1vyk_A	149	Oxygen-evolving enhancer protein 3; photosystem II	3e-38
3ls0_A	133	SLL1638 protein, PSBQ; photosynthesis, four helix	1e-07
3zsu_A	130	TLL2057 protein, cyanoq; photosystem II assembly,	1e-07

>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A Length = 149

 Score =  129 bits (325), Expect = 3e-38
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 4/142 (2%)

Query: 99  GPLPVP----PVYNNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIG 154
           GP P      P   N    + GT  + K   Y+  +       R K  A ++L +   I 
Sbjct: 8   GPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFID 67

Query: 155 PDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNF 214
                 ++  LRL+++++ YD   VISA    +K+ L +L ++LF S + L+ A   K+ 
Sbjct: 68  RKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSP 127

Query: 215 PQTQSTYADTAVILHEVMDRMA 236
            + +  Y  T   ++EV+ ++ 
Sbjct: 128 TEAEKYYGQTVSNINEVLAKLG 149

>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A Length = 133

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 135 RIHRLKRYAFDLLAMAD--------LIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPT 186
           +I +L+ Y   +    D        LI        + Y+      +  D   + S+  P 
Sbjct: 21  KIAQLQVYVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPK 80

Query: 187 DKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMD 233
           D+     LA  +F   E+L+ A   +N  Q +  Y +        ++
Sbjct: 81  DQDKAKTLAKEVFGHLERLDAAAKDRNGSQAKIQYQEALADFDSFLN 127

>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus} Length = 130

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 7/108 (6%)

Query: 135 RIHRLKRYAFDLLAMAD-------LIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTD 187
           +I R++ Y  D+   A+        +        R  +R     M  D   +       D
Sbjct: 19  QITRIQDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKD 78

Query: 188 KQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRM 235
           +   T L   L + F K++      +    Q  + +        ++ +
Sbjct: 79  QPTPTALTRALTDDFLKIDQGADLDSVTVAQEGFREAEADFKAYLNSL 126

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
1vyk_A	149	Oxygen-evolving enhancer protein 3; photosystem II	100.0
3zsu_A	130	TLL2057 protein, cyanoq; photosystem II assembly,	99.87
3ls0_A	133	SLL1638 protein, PSBQ; photosynthesis, four helix	99.87
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	95.28

>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A

Probab=100.00  E-value=3.4e-52  Score=347.30  Aligned_cols=144  Identities=23%  Similarity=0.374  Sum_probs=124.6

Q ss_pred             cCCceecCCCCCCccCCcccccCcchhhH---H-HHhhhhcCCChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhh
Q 026590           92 DNGLWVTGPLPVPPVYNNIANEKTGTRSF---L-KKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRL  167 (236)
Q Consensus        92 ~~~~~~~~p~P~ps~~n~~~~~~~gtr~~---l-kerf~~~~ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRl  167 (236)
                      +.+|+ +||||||||+.+|++...+.|+|   + |||||+|++||+||++|||++|++|++|++||++++|+|||+|||+
T Consensus         2 ~~~~~-~~~~~~~~~~~~g~~~~~~ard~~l~~~k~~f~~~~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~   80 (149)
T 1vyk_A            2 ARPIV-VGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRL   80 (149)
T ss_dssp             CSCEE-CCCCCCC--------------------CTTCCEECCCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCc-CCCCCCCCCCCCCcccchhhhccCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence            56788 99999999999999999999999   7 9999999999999999999999999999999999999999999999


Q ss_pred             cccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhcC
Q 026590          168 KSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA  236 (236)
Q Consensus       168 ka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlaki~  236 (236)
                      |++||||||++||++||+++|+++++||++||++|++||+|||.||.+++++||++|+++||+||++|+
T Consensus        81 ~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t~~~ld~vl~~l~  149 (149)
T 1vyk_A           81 RASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG  149 (149)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999986

>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}

Probab=99.87  E-value=2.3e-22  Score=164.60  Aligned_cols=103  Identities=12%  Similarity=0.173  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCCC
Q 026590          134 GRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKN  213 (236)
Q Consensus       134 ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~Kn  213 (236)
                      .=+.+|.+.+++|.+|+.||++++|.+||++||++.|.||+||++|..+|++.+||++++|+++||++|++||.|++.+|
T Consensus        25 ~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n  104 (130)
T 3zsu_A           25 DYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDS  104 (130)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45678888888999999999999999999999999999999999999997655699999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcC
Q 026590          214 FPQTQSTYADTAVILHEVMDRMA  236 (236)
Q Consensus       214 ~~~a~~~Y~~Tv~~LdeVlaki~  236 (236)
                      ...+++.|++++++||..+.-|+
T Consensus       105 ~~~a~k~Y~~a~adfdafl~liP  127 (130)
T 3zsu_A          105 VTVAQEGFREAEADFKAYLNSLP  127 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999987663

>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A

Probab=99.87  E-value=4.2e-22  Score=163.60  Aligned_cols=103  Identities=16%  Similarity=0.224  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHH-hhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCC
Q 026590          134 GRIHRLKRYAFDLLA-MADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTK  212 (236)
Q Consensus       134 ea~~RiK~sA~~L~~-lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~K  212 (236)
                      .=+.+|.+.+++|.+ |+.||++++|.+||+|||++.|.||+||++|..+|++.+||++++|+++||++|++||.|++.+
T Consensus        27 ~y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~  106 (133)
T 3ls0_A           27 VYVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDR  106 (133)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456778888999999 9999999999999999999999999999999999654459999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhcC
Q 026590          213 NFPQTQSTYADTAVILHEVMDRMA  236 (236)
Q Consensus       213 n~~~a~~~Y~~Tv~~LdeVlaki~  236 (236)
                      |...+++.|++++++||..+.-|+
T Consensus       107 n~~~a~k~Y~~a~adfdafl~liP  130 (133)
T 3ls0_A          107 NGSQAKIQYQEALADFDSFLNLLP  130 (133)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999987663

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=95.28  E-value=0.026  Score=52.73  Aligned_cols=118  Identities=12%  Similarity=0.117  Sum_probs=93.3

Q ss_pred             CcccccCcchhhHHHHhhhhcCCChhHHHHHHHHHHHHHHHhhhhcC---CCChHHHHHHhhhcccchhhhHHHHHhhcC
Q 026590          108 NNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIG---PDTLNYVRKYLRLKSTFMYYDFDNVISAAA  184 (236)
Q Consensus       108 n~~~~~~~gtr~~lkerf~~~~ls~~ea~~RiK~sA~~L~~lkdLId---~~sW~yVr~yLRlka~~Lr~DL~tlIsskP  184 (236)
                      ++..|.-++.+..||..+=+-...       ||+--+.|..+-+++.   .+.|.-+.++++.-+.-|..+=+.|+.+.|
T Consensus        26 l~~g~~~~~~~a~lr~alp~~~~~-------~~~~q~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~   98 (369)
T 3rfy_A           26 LISGPPIKDPEALLRYALPIDNKA-------IREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFA   98 (369)
T ss_dssp             EEESTTSCCHHHHHHHHSCCCCHH-------HHHHHHHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCC
T ss_pred             cCCCCCCCCHHHHHhhhcCCCChh-------HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCHHHHHhhcC
Confidence            333445566777888776553332       2333333444555554   499999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q 026590          185 PTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVM  232 (236)
Q Consensus       185 kdeKK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVl  232 (236)
                      .+.|.+..+|.++|=..|++|..++..||........++++..+.++=
T Consensus        99 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~~~~~~~~~~~l~~v~~le  146 (369)
T 3rfy_A           99 ESKKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIE  146 (369)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHCCCSSCCCSSSGGGHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988888888877763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1nzea_	112	a.24.18.1 (A:) Oxygen-evolving enhancer protein 3,	9e-29

>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 112

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Oxygen-evolving enhancer protein 3,
family: Oxygen-evolving enhancer protein 3,
domain: Oxygen-evolving enhancer protein 3,
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  102 bits (256), Expect = 9e-29
 Identities = 28/110 (25%), Positives = 55/110 (50%)

Query: 126 YIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAP 185
           Y+  +       R K  A ++L +   I       ++  LRL+++++ YD   VISA   
Sbjct: 2   YLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPK 61

Query: 186 TDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRM 235
            +K+ L +L ++LF S + L+ A   K+  + +  Y  T   ++EV+ ++
Sbjct: 62  DEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1nzea_	112	Oxygen-evolving enhancer protein 3, {Spinach (Spin	100.0

>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Oxygen-evolving enhancer protein 3,
family: Oxygen-evolving enhancer protein 3,
domain: Oxygen-evolving enhancer protein 3,
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=4.7e-41  Score=265.59  Aligned_cols=111  Identities=25%  Similarity=0.471  Sum_probs=110.1

Q ss_pred             hhhcCCChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHH
Q 026590          125 IYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEK  204 (236)
Q Consensus       125 f~~~~ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~  204 (236)
                      ||+|+++|+||+.|||+|+++|.+|++||++++|+|||+|||++++||||||++||+++|+++||++++|+++||++|++
T Consensus         1 f~~~~l~p~eaa~ri~~sa~~L~~l~~lI~k~~W~~v~~~Lr~~~~~Lr~dl~~li~~~~~~~k~~~~~la~~lf~~le~   80 (112)
T d1nzea_           1 FYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDN   80 (112)
T ss_dssp             CCCCCCCTTTHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHhhc
Q 026590          205 LEVAVSTKNFPQTQSTYADTAVILHEVMDRM  235 (236)
Q Consensus       205 LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlaki  235 (236)
                      ||+|||.||.+++++||++|+++||+||++|
T Consensus        81 LD~Aar~kd~~~a~~~Y~~t~~~ld~~la~l  111 (112)
T d1nzea_          81 LDHAAKIKSPTEAEKYYGQTVSNINEVLAKL  111 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999987