Citrus Sinensis ID: 026591

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MLVSSHLPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRTRSSGNICSTCDRSLQDSYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGLMTPDSILEPVGPTRTSSGSDGYGGALASCDTIKIVKKKRSSITACRSVCSPVPEMSVGLMNRRKKTPQRAPLY
Secondary Structure (PSIPRED)
cccccccccHHHHHHHcccccccccccccccccccEEEEcccccccHHHHHccccccHHHHHHHHcccEEEcccccccccccccccEEEcccEEEEEccccccccccccccccccccccccccEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHccccHHccccccccccEEEEccHHHHHHHHcHccccccEEEEEEEEcccEEEHHHHHHHEcccccEEEEEcccEEEEEcccccccccccccccHHHHHHccccccEEEEEEEEEEEEcccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccc
Coil and Loop (DISEMBL)
mlvsshlpRWLEVLFTEKFFNGCIIheeerknekniycldcctslcphclslhgshRLLQIRRYVYQDVIrlddaaklvdcdyvqpyinngakviflnqrpqsrtrssgnicstcdrslqdsylfccLSCKIDYLIRIEGGLSKFffecnflplpessfenglmtpdsilepvgptrtssgsdgyggalascDTIKIVKKkrssitacrsvcspvpemsvglmnrrkktpqraply
Flexible Loop (DISEMBL)
mlvsshlprWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRTRSSGNICSTCDRSLQDSYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGLMTPDSILEPVGPTRtssgsdgyggaLASCDTIKIVKkkrssitacrsvcspvpemsvglmnrrkktpqraply
Low Complexity Region (SEG)
MLVSSHLPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRTRSSGNICSTCDRSLQDSYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGLMTPDSILEPVGPTRTSSGSDGYGGALASCDTIKIVKKKRSSITACRSVCSPVPEMSVGLMNRRKKTPQRAPLY
Disordered region (IsUnstruct)
******LPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQ**********NICSTCDRSLQDSYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLP*****************************YGGALASCDTIKIVKKKRSSITACRSVC************************
Disordered Region (DISOPRED)
******L***LEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIF*****************TCDRSLQDSYLFCCLSCKIDYLIRIEGGLS**************************************************************************************PQRAPLY
Disordered Region (DISEMBL)
MLVSSHLPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQ***********ICSTCDRSLQDSYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGLMTPDSILEPVGP*********YGGALASCDTIKIVK********CRSVCSPVPEMSVGLMNR***********
Disordered Region (DISPRO)
*****HLPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRTRSSGNICSTCDRSLQDSYLFCCLSCKIDYLIRIEGGLS*********************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVSSHLPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRTRSSGNICSTCDRSLQDSYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGLMTPDSILEPVGPTRTSSGSDGYGGALASCDTIKIVKKKRSSITACRSVCSPVPEMSVGLMNRRKKTPQRAPLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
O66853	333	Uncharacterized protein a	yes	no	0.377	0.267	0.279	0.0004

>sp|O66853|Y591_AQUAE Uncharacterized protein aq_591 OS=Aquifex aeolicus (strain VF5) GN=aq_591 PE=4 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 112 CSTCDRSLQDSYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGLMTPDSILE 171
           C  C R L+    F CL+  +D+L      ++ FFFE  FLPL E   +   ++ ++  E
Sbjct: 123 CEICTRGLEGEEFFNCLTQNVDFLTATH--IANFFFEEEFLPLNEEIAQILNISKENYFE 180

Query: 172 PVGPTRTSSGSDGYGG--ALASCDTIKIVKKKR 202
            +   + ++  + YG    L   D++K+   KR
Sbjct: 181 VIKKLKGANLKNLYGALYVLLQRDSVKVNHVKR 213

Aquifex aeolicus (strain VF5) (taxid: 224324)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
356498244	250	PREDICTED: uncharacterized protein LOC10	0.987	0.932	0.674	7e-85
225453971	251	PREDICTED: uncharacterized protein LOC10	1.0	0.940	0.661	2e-83
296089178	250	unnamed protein product [Vitis vinifera]	1.0	0.944	0.656	3e-83
356541343	295	PREDICTED: uncharacterized protein LOC10	0.957	0.766	0.655	2e-82
449445694	262	PREDICTED: uncharacterized protein LOC10	0.974	0.877	0.638	9e-78
255541210	257	zinc ion binding protein, putative [Rici	0.995	0.914	0.663	2e-77
449521834	248	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.974	0.927	0.634	7e-77
224136260	239	predicted protein [Populus trichocarpa]	0.974	0.962	0.606	1e-69
15232396	245	PLATZ transcription factor family protei	0.983	0.946	0.564	3e-69
297820924	245	hypothetical protein ARALYDRAFT_486540 [	0.983	0.946	0.564	9e-68

>gi|356498244|ref|XP_003517963.1| PREDICTED: uncharacterized protein LOC100787153 [Glycine max]

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 164/243 (67%), Positives = 185/243 (76%), Gaps = 10/243 (4%)

Query: 4   SSHLPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRR 63
           SSH+PRWL+VL TEKF+N CIIHE  +KNEKN+YCLDCC SLCPHCLS H SHRLLQIRR
Sbjct: 8   SSHVPRWLQVLLTEKFYNACIIHEGAKKNEKNVYCLDCCISLCPHCLSPHRSHRLLQIRR 67

Query: 64  YVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSLQDS 122
           YVY DVIRL DAAKL+DC+ VQ Y  N AKV+FLNQRPQ+R  R SGN C TCDRSLQD 
Sbjct: 68  YVYHDVIRLGDAAKLIDCNSVQSYTTNSAKVVFLNQRPQTRNFRGSGNFCGTCDRSLQDP 127

Query: 123 YLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGLMTPDSILEPVGPTRTSSGS 182
           Y FC LSCKI+YL+R  G L  + FECN+LPLPES  ++GLMTPDS+LEP G  RTSSGS
Sbjct: 128 YHFCSLSCKINYLVRTTGSLCNYLFECNYLPLPESGLDDGLMTPDSVLEPAGSARTSSGS 187

Query: 183 DGYG-----GALASCDTIKIVKKKRSSITA----CRSVCSPVPEMSVGLMNRRKKTPQRA 233
            GYG       LA   T +IV+KKR+  +     CR  CSPV E+S GLMNRRK  PQRA
Sbjct: 188 GGYGGVDCRTTLACTATTEIVRKKRTGGSTFRPPCRPACSPVSEISAGLMNRRKGNPQRA 247

Query: 234 PLY 236
           PLY
Sbjct: 248 PLY 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453971|ref|XP_002280288.1| PREDICTED: uncharacterized protein LOC100248806 [Vitis vinifera]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 166/251 (66%), Positives = 188/251 (74%), Gaps = 15/251 (5%)

Query: 1   MLVSSHL-PRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLL 59
           M+VSS+L PRWLE L  EKFFN C+IHE  +KNEKNI+CLDCCTS+CPHCLS H SHRLL
Sbjct: 1   MMVSSNLLPRWLEALLREKFFNACVIHEYAKKNEKNIFCLDCCTSICPHCLSPHRSHRLL 60

Query: 60  QIRRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRS 118
           QIRRYVY DVIRLDDA KL+DC  VQ Y  N AKV+FLNQRPQ+R  R SGNICSTCDRS
Sbjct: 61  QIRRYVYHDVIRLDDAEKLMDCASVQAYTTNSAKVVFLNQRPQTRQFRGSGNICSTCDRS 120

Query: 119 LQDSYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPES--SFENGLMTPDSILEPVGPT 176
           LQD Y FC LSCKIDYL+R EG LSK+ FEC +L LPE     E+GL+TPDS+LEP G  
Sbjct: 121 LQDPYHFCSLSCKIDYLLRTEGKLSKYLFECEYLTLPEPGCELEDGLLTPDSVLEPPGSM 180

Query: 177 RTSSGSDGYGG-------ALASCDTIKIVKKKRSSI----TACRSVCSPVPEMSVGLMNR 225
           RTSS S    G        LA   T + V+KKRSS+    TACR + SPV E+S G+MNR
Sbjct: 181 RTSSSSSAGEGAGGVGCRTLACTATTEFVRKKRSSVSVYRTACRPIYSPVSEISAGMMNR 240

Query: 226 RKKTPQRAPLY 236
           RK TPQR+PLY
Sbjct: 241 RKGTPQRSPLY 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089178|emb|CBI38881.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 164/250 (65%), Positives = 186/250 (74%), Gaps = 14/250 (5%)

Query: 1   MLVSSHLPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQ 60
           M+ S+ LPRWLE L  EKFFN C+IHE  +KNEKNI+CLDCCTS+CPHCLS H SHRLLQ
Sbjct: 1   MVSSNLLPRWLEALLREKFFNACVIHEYAKKNEKNIFCLDCCTSICPHCLSPHRSHRLLQ 60

Query: 61  IRRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSL 119
           IRRYVY DVIRLDDA KL+DC  VQ Y  N AKV+FLNQRPQ+R  R SGNICSTCDRSL
Sbjct: 61  IRRYVYHDVIRLDDAEKLMDCASVQAYTTNSAKVVFLNQRPQTRQFRGSGNICSTCDRSL 120

Query: 120 QDSYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPES--SFENGLMTPDSILEPVGPTR 177
           QD Y FC LSCKIDYL+R EG LSK+ FEC +L LPE     E+GL+TPDS+LEP G  R
Sbjct: 121 QDPYHFCSLSCKIDYLLRTEGKLSKYLFECEYLTLPEPGCELEDGLLTPDSVLEPPGSMR 180

Query: 178 TSSGSDGYGG-------ALASCDTIKIVKKKRSSI----TACRSVCSPVPEMSVGLMNRR 226
           TSS S    G        LA   T + V+KKRSS+    TACR + SPV E+S G+MNRR
Sbjct: 181 TSSSSSAGEGAGGVGCRTLACTATTEFVRKKRSSVSVYRTACRPIYSPVSEISAGMMNRR 240

Query: 227 KKTPQRAPLY 236
           K TPQR+PLY
Sbjct: 241 KGTPQRSPLY 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541343|ref|XP_003539137.1| PREDICTED: uncharacterized protein LOC100797977 [Glycine max]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/244 (65%), Positives = 181/244 (74%), Gaps = 18/244 (7%)

Query: 4   SSHLPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRR 63
           SSH+PRWL+VL TEKF+N CIIHEE +KNEKN+YCLDCC SLCPHCLS H SHRLLQIRR
Sbjct: 59  SSHVPRWLQVLLTEKFYNVCIIHEEAKKNEKNVYCLDCCISLCPHCLSPHRSHRLLQIRR 118

Query: 64  YVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSLQDS 122
           YVY DVIRLDDAAKL+DC+ VQ Y  N AKV+FLNQRPQ+R  R SGN CSTCDRSLQD 
Sbjct: 119 YVYHDVIRLDDAAKLIDCNSVQSYTTNSAKVVFLNQRPQTRNFRGSGNFCSTCDRSLQDP 178

Query: 123 YLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGL-MTPDSILEPVGPTRTSSG 181
           Y FC LSCKI+YL+R    L  + FECN+LPL ES  ++GL MTPDS+LEP       SG
Sbjct: 179 YHFCSLSCKINYLVRTTDSLCGYLFECNYLPLLESGLDDGLMMTPDSVLEP-------SG 231

Query: 182 SDGYGG-----ALASCDTIKIVKKKRSSITA----CRSVCSPVPEMSVGLMNRRKKTPQR 232
           S GYGG      LA   T +IV+KKR+   A     R  CSPV E+S  LMNRRK  PQR
Sbjct: 232 SGGYGGVDCRTTLACTATTEIVRKKRTGGAAFRLPFRPACSPVSEISACLMNRRKGNPQR 291

Query: 233 APLY 236
           APL+
Sbjct: 292 APLH 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445694|ref|XP_004140607.1| PREDICTED: uncharacterized protein LOC101214475 [Cucumis sativus]

 Score =  295 bits (755), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 157/246 (63%), Positives = 184/246 (74%), Gaps = 16/246 (6%)

Query: 7   LPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVY 66
           LP WL+ L TEKFFN C++HE+ +KNEKNI+C DC   +CPHCLS H SH+LLQIRRYVY
Sbjct: 17  LPIWLQALLTEKFFNACVVHEDAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRRYVY 76

Query: 67  QDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT--RSSGNICSTCDRSLQDSYL 124
            DVIRLDDA KL+DC +VQ Y  N AKV+FL QRPQ+R    SSGN+CSTCDRSLQD YL
Sbjct: 77  HDVIRLDDATKLIDCAFVQSYTTNSAKVVFLKQRPQTRNFRGSSGNLCSTCDRSLQDPYL 136

Query: 125 FCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGL-MTPDSILEPVGPTRTSSGSD 183
           FC +SCKIDYL++ +GG+SK   ECNFLPLPE  +++GL MTPDS+LEPVG  R+SSGSD
Sbjct: 137 FCSVSCKIDYLVKTQGGISKHLLECNFLPLPEPGWDDGLMMTPDSVLEPVGSNRSSSGSD 196

Query: 184 GY---GGALASCDTIKIVKKKRSSIT--------ACRSVCSP--VPEMSVGLMNRRKKTP 230
           G    G  L S  T + VKKKRSS+T        ACR VC P  + E S  LM+RRK TP
Sbjct: 197 GGGTEGKTLVSTATTEFVKKKRSSLTAAAAAYRAACRPVCWPGTISETSGSLMSRRKGTP 256

Query: 231 QRAPLY 236
           QRAPLY
Sbjct: 257 QRAPLY 262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541210|ref|XP_002511669.1| zinc ion binding protein, putative [Ricinus communis] gi|223548849|gb|EEF50338.1| zinc ion binding protein, putative [Ricinus communis]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 162/244 (66%), Positives = 185/244 (75%), Gaps = 9/244 (3%)

Query: 2   LVSSHLP-RWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQ 60
           LVSS+ P  WL+VL TEKFFN CIIHEE +KNEKNI+CLDCC S+CPHCLS H SHRLLQ
Sbjct: 14  LVSSNTPPYWLQVLLTEKFFNACIIHEEAKKNEKNIFCLDCCISICPHCLSPHNSHRLLQ 73

Query: 61  IRRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSL 119
           IRRYVY DVIRL DA KL DC +VQ Y  N AKV+F+N RPQ+R  R SGNIC+TC+RSL
Sbjct: 74  IRRYVYHDVIRLGDAQKLFDCAFVQSYTTNSAKVVFINPRPQTRQFRGSGNICNTCERSL 133

Query: 120 QDSYLFCCLSCKIDYLIRIEG--GLSKFFFECNFLPLPE-SSFENGLMTPDSILEPVGPT 176
           QD YLFC LSCKID+LIR +G  GLS F FEC FL L E  S ++GLMTPDS+LEP   T
Sbjct: 134 QDPYLFCSLSCKIDHLIRTKGASGLSNFLFECKFLFLSEPGSSDDGLMTPDSVLEPAAST 193

Query: 177 RTSSGSDGYGGA----LASCDTIKIVKKKRSSITACRSVCSPVPEMSVGLMNRRKKTPQR 232
           RTSS S G G      LA   T +IV+KKRSS++ACR +   + E+S  LMNRRKKTP R
Sbjct: 194 RTSSSSGGCGEVGCRTLACTATTEIVRKKRSSLSACRPIFPRISEISASLMNRRKKTPNR 253

Query: 233 APLY 236
           APLY
Sbjct: 254 APLY 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521834|ref|XP_004167934.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101214475, partial [Cucumis sativus]

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 156/246 (63%), Positives = 183/246 (74%), Gaps = 16/246 (6%)

Query: 7   LPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVY 66
           LP WL+ L TEKFFN C++HE+ +KNEKNI+C DC   +CPHCLS H SH+LLQIRRYVY
Sbjct: 3   LPIWLQALLTEKFFNACVVHEDAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRRYVY 62

Query: 67  QDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT--RSSGNICSTCDRSLQDSYL 124
            DVIRLDDA KL+DC +VQ Y  N AKV+FL QRPQ+R    SSGN+CSTCDRSLQD YL
Sbjct: 63  HDVIRLDDATKLIDCAFVQSYTTNSAKVVFLKQRPQTRNFRGSSGNLCSTCDRSLQDPYL 122

Query: 125 FCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGL-MTPDSILEPVGPTRTSSGSD 183
           FC +SC IDYL++ +GG+SK   ECNFLPLPE  +++GL MTPDS+LEPVG  R+SSGSD
Sbjct: 123 FCSVSCXIDYLVKTQGGISKHLLECNFLPLPEPGWDDGLMMTPDSVLEPVGSNRSSSGSD 182

Query: 184 GY---GGALASCDTIKIVKKKRSSIT--------ACRSVCSP--VPEMSVGLMNRRKKTP 230
           G    G  L S  T + VKKKRSS+T        ACR VC P  + E S  LM+RRK TP
Sbjct: 183 GGGTEGKTLVSTATTEFVKKKRSSLTAAAAAYRAACRPVCWPGTISETSGSLMSRRKGTP 242

Query: 231 QRAPLY 236
           QRAPLY
Sbjct: 243 QRAPLY 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136260|ref|XP_002326817.1| predicted protein [Populus trichocarpa] gi|222835132|gb|EEE73567.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 145/239 (60%), Positives = 173/239 (72%), Gaps = 9/239 (3%)

Query: 7   LPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVY 66
           LP WL+ L  EKFF+ C  H+  RKNEKNI+CLDCC S+CPHCLS H SHRLLQIRRYVY
Sbjct: 1   LPPWLQALLAEKFFDACSTHKGARKNEKNIFCLDCCISICPHCLSPHNSHRLLQIRRYVY 60

Query: 67  QDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRTRS-SGNICSTCDRSLQDSYLF 125
            DV+RLDDA KL DC +VQ Y  N AKVIFLN RPQ+R  +  GN CSTCDR LQ  YLF
Sbjct: 61  NDVLRLDDAQKLFDCAFVQSYTTNSAKVIFLNHRPQTRIVNIRGNNCSTCDRGLQYPYLF 120

Query: 126 CCLSCK-IDYLIRIEG--GLSKFFFECNFLPLPESSFENGLMTPDSILEPVGPTRTSSGS 182
           C +SCK +D+++  +G  GLS FF +C FLPL E   ++GLMTPDS+LEP G  +TSS S
Sbjct: 121 CSISCKVVDHILTTKGVSGLSSFFCDCKFLPLSEPGSDDGLMTPDSVLEPTGSAKTSSSS 180

Query: 183 DGYG----GALASCDTIKIVKKKRSSIT-ACRSVCSPVPEMSVGLMNRRKKTPQRAPLY 236
            GYG      LA   T +IV+KKRSS+T +CR++   + E+S  LMNRRKK P RAPLY
Sbjct: 181 GGYGGVDCKTLACTATTEIVRKKRSSLTNSCRTMFPRITEISSNLMNRRKKAPCRAPLY 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232396|ref|NP_191626.1| PLATZ transcription factor family protein [Arabidopsis thaliana] gi|7329677|emb|CAB82671.1| putative protein [Arabidopsis thaliana] gi|56121894|gb|AAV74228.1| At3g60670 [Arabidopsis thaliana] gi|57222190|gb|AAW39002.1| At3g60670 [Arabidopsis thaliana] gi|332646574|gb|AEE80095.1| PLATZ transcription factor family protein [Arabidopsis thaliana]

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 140/248 (56%), Positives = 167/248 (67%), Gaps = 16/248 (6%)

Query: 2   LVSSHLPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQI 61
           + S   P WLEVL  +KFFN C+ HE+++KNEKNI C+DCC ++CPHCLS H SHRLLQI
Sbjct: 1   MESGEFPAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCCLTICPHCLSSHTSHRLLQI 60

Query: 62  RRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSLQ 120
           RRYVY+DV+R++D +KL+DC  +QPY  N +KV+F+N+RPQSR  R SGNIC TCDRSLQ
Sbjct: 61  RRYVYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRSLQ 120

Query: 121 DSYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGLMTPDSILEPVGPTRTSS 180
             YLFCCLSCKI  +I  + GLS F   CN L L +   E    TP S LEP G  RTSS
Sbjct: 121 SPYLFCCLSCKISDVIMRQRGLSGFLRVCNVLDLTD---EVTTTTPSSTLEPTGSNRTSS 177

Query: 181 GSDGYGG-------ALASCDTIKIVKKKRSSI-TACRSVCSPV----PEMSVGLMNRRKK 228
            S G  G       ALA   T +IV+KKRSS+ T CR V   V     E  V  +NRRK 
Sbjct: 178 ESSGNEGEDMFWCQALACTATTEIVRKKRSSLSTTCRRVTEVVSTTNTEAPVNFLNRRKN 237

Query: 229 TPQRAPLY 236
            PQRAPLY
Sbjct: 238 PPQRAPLY 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820924|ref|XP_002878345.1| hypothetical protein ARALYDRAFT_486540 [Arabidopsis lyrata subsp. lyrata] gi|297324183|gb|EFH54604.1| hypothetical protein ARALYDRAFT_486540 [Arabidopsis lyrata subsp. lyrata]

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 140/248 (56%), Positives = 168/248 (67%), Gaps = 16/248 (6%)

Query: 2   LVSSHLPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQI 61
           + S   P WLEVL  +KFFN C+ HE+ +KNEKNI C+DCC S+CPHCLS H +HRLLQI
Sbjct: 1   MESGEFPAWLEVLLKDKFFNACLDHEDVKKNEKNILCIDCCLSICPHCLSSHTTHRLLQI 60

Query: 62  RRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSLQ 120
           RRYVY+DV+R++D +KL+DC  +QPYI N +KV+F+N+RPQSR  R SGNIC TCDRSLQ
Sbjct: 61  RRYVYRDVLRVEDGSKLMDCSLIQPYITNSSKVVFINERPQSRQFRGSGNICITCDRSLQ 120

Query: 121 DSYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGLMTPDSILEPVGPTRTSS 180
             YLFC LSCKI  +I  + GL+ F   CN L L +   E    TP S LEP G TRT+S
Sbjct: 121 SPYLFCSLSCKISDVIMRQRGLAGFLRVCNVLDLTD---EVTTTTPSSTLEPTGSTRTTS 177

Query: 181 GSDGYG------GALASCDTIKIVKKKRSSI-TACRSVCSPV----PEMSVGLMNRRKKT 229
            S G G       ALA   T +IV+KKRSS+ T CR V   V     E  V  +NRRK T
Sbjct: 178 ESAGNGEDMFWCQALACTATTEIVRKKRSSLSTTCRRVTEVVSTTDTEAPVNFLNRRKNT 237

Query: 230 -PQRAPLY 236
            PQRAPLY
Sbjct: 238 PPQRAPLY 245

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2101881	245	AT3G60670 [Arabidopsis thalian	0.974	0.938	0.569	3.5e-68
TAIR|locus:1009023224	256	AT2G12646 "AT2G12646" [Arabido	0.898	0.828	0.429	7.7e-48
TAIR|locus:2015761	243	AT1G31040 [Arabidopsis thalian	0.961	0.934	0.464	9.8e-48
TAIR|locus:2035614	213	AT1G32700 [Arabidopsis thalian	0.529	0.586	0.503	4.3e-32
TAIR|locus:2009879	216	AT1G43000 [Arabidopsis thalian	0.533	0.583	0.437	2.3e-31
TAIR|locus:2141070	227	AT4G17900 [Arabidopsis thalian	0.529	0.550	0.484	2e-30
TAIR|locus:2037405	246	AT1G21000 [Arabidopsis thalian	0.580	0.556	0.439	4.2e-30
TAIR|locus:2011721	245	AT1G76590 [Arabidopsis thalian	0.940	0.906	0.349	1.3e-27
TAIR|locus:4010713610	222	AT2G01818 [Arabidopsis thalian	0.521	0.554	0.462	1.2e-26
TAIR|locus:2057867	189	AT2G27930 [Arabidopsis thalian	0.533	0.666	0.405	6.1e-23

TAIR|locus:2101881 AT3G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 140/246 (56%), Positives = 166/246 (67%)

Query:     4 SSHLPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRR 63
             S   P WLEVL  +KFFN C+ HE+++KNEKNI C+DCC ++CPHCLS H SHRLLQIRR
Sbjct:     3 SGEFPAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCCLTICPHCLSSHTSHRLLQIRR 62

Query:    64 YVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSLQDS 122
             YVY+DV+R++D +KL+DC  +QPY  N +KV+F+N+RPQSR  R SGNIC TCDRSLQ  
Sbjct:    63 YVYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRSLQSP 122

Query:   123 YLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGLMTPDSILEPVGPTRTSSGS 182
             YLFCCLSCKI  +I  + GLS F   CN L L +   E    TP S LEP G  RTSS S
Sbjct:   123 YLFCCLSCKISDVIMRQRGLSGFLRVCNVLDLTD---EVTTTTPSSTLEPTGSNRTSSES 179

Query:   183 DGYGG-------ALASCDTIKIVKKKRSSI-TACRSVCSPVP----EMSVGLMNRRKKTP 230
              G  G       ALA   T +IV+KKRSS+ T CR V   V     E  V  +NRRK  P
Sbjct:   180 SGNEGEDMFWCQALACTATTEIVRKKRSSLSTTCRRVTEVVSTTNTEAPVNFLNRRKNPP 239

Query:   231 QRAPLY 236
             QRAPLY
Sbjct:   240 QRAPLY 245

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

TAIR|locus:1009023224 AT2G12646 "AT2G12646" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 98/228 (42%), Positives = 137/228 (60%)

Query:     8 PRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVYQ 67
             P WL+ L+ EKFF GC  HE  +KNE+N+ CLDCCTSLCPHC+  H  HRLLQ+RRYVY 
Sbjct:     6 PAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCCTSLCPHCVPSHRFHRLLQVRRYVYH 65

Query:    68 DVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSLQDSYLFC 126
             DV+RL+D  KL+DC  VQ Y  N AKV+F+ +RPQ+R  + +GN C++CDRSLQ+ Y+ C
Sbjct:    66 DVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQEPYIHC 125

Query:   127 CLSCKIDYLIRIEGGLSKFFFECNFLPL-PESSFENGLMTPDSILEPVGPTRT------- 178
              L CK+D++++    ++ F   C+ L L P+      L+T D +     P  T       
Sbjct:   126 SLGCKVDFVMKRYRDITPFLKPCHTLTLGPDYIIPQDLLTDDEVAAYETPRSTVVDGDES 185

Query:   179 ------SSGSDGYGGALA-SCDTIKIVKKKRSSITACRSVCSPVPEMS 219
                   SS ++  G A A +  T  +V+KKR+    C    +   E+S
Sbjct:   186 MSWSSASSDNNNAGAAAAYAATTTHVVRKKRTGFCLCAKSANSYKEVS 233

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015761 AT1G31040 [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 110/237 (46%), Positives = 137/237 (57%)

Query:     1 MLVSSHLPRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQ 60
             M++ +  P WLE L  E FF+ C IHE  RK+EKN++CL CC S+CPHCL  H SH LLQ
Sbjct:    12 MMMMATKPAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCLSVCPHCLPSHRSHPLLQ 71

Query:    61 IRRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRTRSSGNICSTCDRSLQ 120
             +RRYVY DV+RL D  KL+DC YVQPY  NGAKVIFLNQR QSR + S N+C TCDR LQ
Sbjct:    72 VRRYVYHDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSRAKVSSNVCFTCDRILQ 131

Query:   121 DSYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFE-NGLMTPDSILEPVGPTRT- 178
             + + FC LSCK+DYL      LS   +      + ES F   GL       + +G   T 
Sbjct:   132 EPFHFCSLSCKVDYLSYQGDDLSSILYR-----IDESDFTFEGLRMDGH--DQLGEISTM 184

Query:   179 SSGSDGYGGALASCDTIKIVKKKRSSITACRSVCSPVPEMSVG-LMNRRKKTPQRAP 234
               G D    +  S       KK++      +   + +P M +  L NRRK  P RAP
Sbjct:   185 EDGEDILVISDESEQGNNSHKKEKKKSKKKKPESNYLPGMVLSSLGNRRKGAPHRAP 241

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035614 AT1G32700 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 64/127 (50%), Positives = 78/127 (61%)

Query:     8 PRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTS-LCPHCLSLHGSHRLLQIRRYVY 66
             P WL+ L  EKFF  C +H +  K+E N+YCLDC    LC  CLS H  H  +QIRR  Y
Sbjct:    12 PHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSFHKDHHAIQIRRSSY 71

Query:    67 QDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSLQDSYLF 125
              DVIR+ +  K +D   VQ Y+ N AKV+FLN+RPQ R  +   N C  C RSL DS+ F
Sbjct:    72 HDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEVCYRSLVDSFRF 131

Query:   126 CCLSCKI 132
             C L CKI
Sbjct:   132 CSLGCKI 138

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2009879 AT1G43000 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 56/128 (43%), Positives = 80/128 (62%)

Query:     8 PRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCC-TSLCPHCLSLHGSHRLLQIRRYVY 66
             P WL  +    +F  C IH +  K+E N++CLDC   + C  CL+ H +HR++QIRR  Y
Sbjct:     9 PPWLTPMLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLAHHRTHRVIQIRRSSY 68

Query:    67 QDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRTRSSGN-ICSTCDRSLQDSYLF 125
              +V+R+ +  K +D   +Q Y+ N AK+ FLN RPQ RT  S N  C  C R+L DS+LF
Sbjct:    69 HNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGKSLNKTCQICSRNLLDSFLF 128

Query:   126 CCLSCKID 133
             C L+CK++
Sbjct:   129 CSLACKLE 136

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2141070 AT4G17900 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 62/128 (48%), Positives = 79/128 (61%)

Query:     8 PRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTS-LCPHCLSLHGSHRLLQIRRYVY 66
             P WL+ L  E+FF  C  H +  K+E N+YCLDC    LC  CL+ H  HR +QIRR  Y
Sbjct:    34 PPWLKPLLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLAHHKDHRTIQIRRSSY 93

Query:    67 QDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSL-QDSYL 124
              DVIR+++  K +D   +Q Y+ N AKV+FLN+RPQ R  +   N C  C RSL  DS+ 
Sbjct:    94 HDVIRVNEIQKYLDIGGIQTYVINSAKVVFLNERPQPRPGKGVTNTCKVCYRSLVDDSFR 153

Query:   125 FCCLSCKI 132
             FC L CKI
Sbjct:   154 FCSLGCKI 161

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037405 AT1G21000 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
 Identities = 62/141 (43%), Positives = 84/141 (59%)

Query:     8 PRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCC-TSLCPHCLSLHGSHRLLQIRRYVY 66
             P WL  +    +F  C IH +  KNE N++CLDC   + C +CL  H  HR++QIRR  Y
Sbjct:    16 PPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQIRRSSY 75

Query:    67 QDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSLQDSYLF 125
              +V+R+++  K +D   VQ YI N AK++FLN+RPQ R  +   N C  C RSL DS+ F
Sbjct:    76 HNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRF 135

Query:   126 CCLSCKIDYLIRIEGGLSKFF 146
             C L CK+  + R  G LS  F
Sbjct:   136 CSLGCKLGGMRR--GDLSLTF 154

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011721 AT1G76590 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 81/232 (34%), Positives = 115/232 (49%)

Query:     8 PRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCT-SLCPHCLSLHGSHRLLQIRRYVY 66
             P WL  +    +F  C IH    K+E N++CLDC + + C +CL  H +HR+LQIRR  Y
Sbjct:    18 PPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLNHRNHRVLQIRRSSY 77

Query:    67 QDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSLQDSYLF 125
              +V+R+++  K +D   VQ YI N A+++FLN+RPQ R  +   N C  C RSL DS+ F
Sbjct:    78 HNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRF 137

Query:   126 CCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENG-LMTPDSILEPVGPTRTSSGSDG 184
             C L CK+  + R +  L+ F          E  +E+    TP  I +     R  SG   
Sbjct:   138 CSLGCKLGGMKR-DPSLT-FSLRGKHGREYEGEWESDEATTPTKIRKTCAFNRLMSG--- 192

Query:   185 YGGALASCDTIKIVKKKRSSITACRSVCSP--VPEMSVGLMNRRKKTPQRAP 234
                +   CD +   +   SS        SP   P  +    +RRK  P RAP
Sbjct:   193 LSISTVKCDYLSGDQPSSSSGDESGFKLSPGTPPIYNHRNSSRRKGVPHRAP 244

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:4010713610 AT2G01818 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 62/134 (46%), Positives = 81/134 (60%)

Query:    10 WLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSL----HGSHRLLQIRRYV 65
             W+E L   +FF  C+ H+  RKNEKN++C+DC   +C HC +     H  HR LQI +YV
Sbjct:    13 WIETLLNSEFFGICMNHKYLRKNEKNVFCIDCNVEICRHCCNTVTDSHFLHRRLQICKYV 72

Query:    66 YQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSR-----TRS-SGNICSTCDRSL 119
             YQDVIRL +     DC  +Q Y  NG K I LN RPQ++     T++ +G  C TC R +
Sbjct:    73 YQDVIRLLEIQNYFDCSEIQTYKINGEKAIHLNSRPQAKDARPSTKAKNGASCVTCKRYI 132

Query:   120 QDS-YLFCCLSCKI 132
             QD   LFC +SCKI
Sbjct:   133 QDHPNLFCSISCKI 146

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2057867 AT2G27930 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 56/138 (40%), Positives = 77/138 (55%)

Query:     8 PRWLEVLFTEKFFNGCIIHEEERKNEKNIYCLDCCTS-LCPHCLS-LHGSHRLLQIRRYV 65
             P+WLE L    FF+ C  H E  +NE N++CL C  +  C +C S  H  H +LQIRR  
Sbjct:     4 PKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSS 63

Query:    66 YQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRTRSSGN----------ICSTC 115
             Y DV+R+ +    +D   VQ Y+ N A+V+FLN+RPQ +  S G            C TC
Sbjct:    64 YHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETC 123

Query:   116 DRSLQDSYLFCCLSCKID 133
              R+L D + FC L CK++
Sbjct:   124 CRTLLDPFRFCSLGCKVE 141

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
pfam04640	72	pfam04640, PLATZ, PLATZ transcription factor	2e-32

>gnl|CDD|191051 pfam04640, PLATZ, PLATZ transcription factor

 Score =  112 bits (283), Expect = 2e-32
 Identities = 42/72 (58%), Positives = 51/72 (70%), Gaps = 1/72 (1%)

Query: 62  RRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSLQ 120
           RR  Y DV+R+ D  KL+D   VQ Y+ N AKV+FLN+RPQSR  + SGNIC TCDRSL 
Sbjct: 1   RRSSYHDVVRVSDIQKLIDISGVQTYVINSAKVVFLNERPQSRPGKGSGNICETCDRSLL 60

Query: 121 DSYLFCCLSCKI 132
           D + FC L CK+
Sbjct: 61  DPFRFCSLGCKV 72

Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
PF04640	72	PLATZ: PLATZ transcription factor; InterPro: IPR00	100.0
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.61
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	94.87
smart00336	42	BBOX B-Box-type zinc finger.	94.13
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	86.56

>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins

Probab=100.00  E-value=4.6e-38  Score=235.57  Aligned_cols=71  Identities=63%  Similarity=1.165  Sum_probs=69.9

Q ss_pred             EeccccceeeecccccccccCCccceEECCceEEEeecCCCCCC-CCCCCcccccccccCCCceeeeeeccc
Q 026591           62 RRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQRPQSRT-RSSGNICSTCDRSLQDSYLFCCLSCKI  132 (236)
Q Consensus        62 RR~sY~dVVRv~DIqkl~D~S~IQtY~INsakVVFLn~RPq~r~-kg~~~~C~~C~R~L~d~~~FCSL~CKv  132 (236)
                      |||+||||||++||||+||||+||||+||++||||||+|||+++ |+.++.|++|+|+|+|+|+||||+|||
T Consensus         1 Rr~sY~dVVrv~di~kl~D~s~IQtY~iNs~kVVfLn~Rpq~~~~~~~~~~C~~C~R~L~d~~~fCSl~CKv   72 (72)
T PF04640_consen    1 RRYSYHDVVRVSDIQKLLDCSGIQTYVINSAKVVFLNPRPQSRPSKGSGNICETCHRSLQDPYRFCSLSCKV   72 (72)
T ss_pred             CcccccceEEHHHhHhhccccccEEEEeCCceEEEEccCCcCCCCCCCCCccCCCCCCCCCCCeEEeeeEEC
Confidence            79999999999999999999999999999999999999999999 999999999999999999999999997

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.61  E-value=0.00065  Score=44.64  Aligned_cols=37  Identities=32%  Similarity=0.815  Sum_probs=29.8

Q ss_pred             cCccCCCCCCCCCceeecccccccCCccccC-CCCCceeEE
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCLSL-HGSHRLLQI   61 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~~-H~~HrvlQI   61 (236)
                      .|..|..   .+.++||.+|...+|..|... |.+|.++.|
T Consensus         5 ~C~~H~~---~~~~~~C~~C~~~~C~~C~~~~H~~H~~~~i   42 (42)
T PF00643_consen    5 KCPEHPE---EPLSLFCEDCNEPLCSECTVSGHKGHKIVPI   42 (42)
T ss_dssp             B-SSTTT---SBEEEEETTTTEEEEHHHHHTSTTTSEEEEC
T ss_pred             cCccCCc---cceEEEecCCCCccCccCCCCCCCCCEEeEC
Confidence            5888874   347999999999999999865 999987754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=94.87  E-value=0.019  Score=36.48  Aligned_cols=36  Identities=28%  Similarity=0.524  Sum_probs=28.0

Q ss_pred             cCccCCCCCCCCCceeecccccccCCcccc-CCCCCceeE
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCLS-LHGSHRLLQ   60 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~-~H~~HrvlQ   60 (236)
                      .|+.|..   +.-.+||.+|...+|..|.. .|++|.++.
T Consensus         2 ~C~~H~~---~~~~~fC~~~~~~iC~~C~~~~H~~H~~~~   38 (39)
T cd00021           2 LCDEHGE---EPLSLFCETDRALLCVDCDLSVHSGHRRVP   38 (39)
T ss_pred             CCCccCC---cceEEEeCccChhhhhhcChhhcCCCCEee
Confidence            4777753   23589999999999999964 588887654

>smart00336 BBOX B-Box-type zinc finger

Probab=94.13  E-value=0.04  Score=35.42  Aligned_cols=35  Identities=26%  Similarity=0.712  Sum_probs=27.8

Q ss_pred             cCccCCCCCCCCCceeecccccccCCccccC-CCCCcee
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCLSL-HGSHRLL   59 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~~-H~~Hrvl   59 (236)
                      .|+.|..   ..-.+||-+|...+|..|... |++|+++
T Consensus         5 ~C~~h~~---~~~~~~C~~c~~~iC~~C~~~~H~~H~~~   40 (42)
T smart00336        5 KCDSHGD---EPAEFFCEECGALLCRTCDEAEHRGHTVV   40 (42)
T ss_pred             cCCCCCC---CceEEECCCCCcccccccChhhcCCCcee
Confidence            4777764   235899999999999999754 8889765

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=86.56  E-value=0.14  Score=35.20  Aligned_cols=28  Identities=25%  Similarity=0.787  Sum_probs=23.8

Q ss_pred             CCccccccccc---CCCceeeeeecccceEE
Q 026591          109 GNICSTCDRSL---QDSYLFCCLSCKIDYLI  136 (236)
Q Consensus       109 ~~~C~~C~R~L---~d~~~FCSL~CKv~~v~  136 (236)
                      .+.|.+|+|.+   .+...|||-.|++....
T Consensus         6 ~~yC~~Cdk~~~~~~~~~lYCSe~Cr~~D~~   36 (43)
T PF12855_consen    6 NDYCIVCDKQIDPPDDGSLYCSEECRLKDQE   36 (43)
T ss_pred             hhHHHHhhccccCCCCCccccCHHHHhHhhh
Confidence            35799999999   67899999999997644

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 6e-08
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 41/202 (20%)

Query: 4   SSHLPR------WLEV------LFTEKFFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLS 51
           S+H+P       W +V      +   K     ++  E++  E  I        L     +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV--EKQPKESTISIPSIYLELKVKLEN 441

Query: 52  LHGSHRLLQIRRYVYQDVIRLDDAAKLVDCDYVQPYI-------NNGAKV-----IFLNQ 99
            +  HR + +  Y        DD        Y   +I        +  ++     +FL+ 
Sbjct: 442 EYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Query: 100 R-PQSRTRSSG---NICSTCDRSLQD--SYL-FCCLSCKIDYLIRIEGGLSKFFFECNFL 152
           R  + + R      N   +   +LQ    Y  + C +       R+   +  F  +    
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND--PKYERLVNAILDFLPKIE-E 557

Query: 153 PLPESSFEN----GLMTPDSIL 170
            L  S + +     LM  D  +
Sbjct: 558 NLICSKYTDLLRIALMAEDEAI 579

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	95.07
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	94.87
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	94.68
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	94.25
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	94.15
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	92.73
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	91.35
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	90.64
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	90.19
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	89.6

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.07  E-value=0.0084  Score=41.33  Aligned_cols=37  Identities=35%  Similarity=0.796  Sum_probs=29.8

Q ss_pred             cCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEE
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQI   61 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQI   61 (236)
                      .|+.|+..   .-++||.+|...+|..|.  ..|++|+++.|
T Consensus        10 ~C~~H~~e---~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l   48 (64)
T 2d8u_A           10 MCKEHEDE---KINIYCLTCEVPTCSMCKVFGIHKACEVAPL   48 (64)
T ss_dssp             CCSSCTTC---CCCSEESSSCCCCCSHHHHSSSTTSSCEECT
T ss_pred             cCcCcCCC---ccceEcCcCCceeCccccCCCcCCCCCeeCH
Confidence            59998542   368999999999999996  47999977655

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=94.87  E-value=0.01  Score=39.09  Aligned_cols=39  Identities=33%  Similarity=0.747  Sum_probs=30.8

Q ss_pred             cccCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEE
Q 026591           20 FNGCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQI   61 (236)
Q Consensus        20 F~~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQI   61 (236)
                      ...|..|...   .-++||.+|...+|..|.  ..|++|+++.|
T Consensus         6 ~~~C~~H~~e---~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l   46 (48)
T 3ddt_A            6 HPMCKEHEDE---KINIYCLTCEVPTCSMCKVFGIHKACEVAPL   46 (48)
T ss_dssp             SCBCSSSTTS---BCCEEETTTTEEECHHHHHHSTTTTSCEEEC
T ss_pred             CCcCCCCCCc---cccEEcCCCCeeEcccccCCCcCCCCcEEeC
Confidence            3568888631   257999999999999996  47999988764

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=94.68  E-value=0.011  Score=39.01  Aligned_cols=37  Identities=24%  Similarity=0.614  Sum_probs=29.3

Q ss_pred             cCccCCCCCCCCCceeecccccccCCccc-cCCCCCceeEE
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCL-SLHGSHRLLQI   61 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~-~~H~~HrvlQI   61 (236)
                      .|..|+.   ..-++||.+|...+|..|. ..|++|+++.|
T Consensus         8 ~C~~H~~---e~l~lfC~~~~~~iC~~C~~~~H~~H~~~~l   45 (50)
T 2yvr_A            8 YCNVHKH---EPLVLFCESCDTLTCRDCQLNAHKDHQYQFL   45 (50)
T ss_dssp             BCSSSTT---CBCCEEETTTTEEECHHHHHTTTTTCCEEET
T ss_pred             cCcCCCC---CCEEEEeCCCCEEEecccCCCcCCCCceecH
Confidence            5888854   2368999999999999996 46889977654

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=94.25  E-value=0.026  Score=35.93  Aligned_cols=35  Identities=37%  Similarity=0.677  Sum_probs=28.7

Q ss_pred             cCccCCCCCCCCCceeecccccccCCcccc--CCCCCceeE
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCLS--LHGSHRLLQ   60 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~--~H~~HrvlQ   60 (236)
                      .|..|..    ...+||-++...+|..|..  .|++|+++.
T Consensus         5 ~C~~H~e----~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~   41 (42)
T 1fre_A            5 KCSEHDE----RLKLYCKDDGTLSCVICRDSLKHASHNFLP   41 (42)
T ss_dssp             CCCSSCS----SCCCCCCSSSSSSCCTTSSCSSCTTCCCCC
T ss_pred             cchhhCC----eeeEEeCCCCeEEeccCCCCCCCCCCcEec
Confidence            5888852    3689999999999999974  699998754

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=94.15  E-value=0.019  Score=38.36  Aligned_cols=36  Identities=22%  Similarity=0.599  Sum_probs=29.8

Q ss_pred             cCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEE
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQI   61 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQI   61 (236)
                      .|..|..    ...+||.+|...+|..|.  ..|++|+++.|
T Consensus        10 ~C~~H~e----~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l   47 (53)
T 2did_A           10 LCPQHHE----ALSLFCYEDQEAVCLICAISHTHRAHTVVPL   47 (53)
T ss_dssp             BCTTTCC----BCCEEESSSCSEECHHHHTSSTTTTSCEEEC
T ss_pred             cChhhCC----eeeEEeCCCCeEEeccccCCCCCCCCcEeeH
Confidence            5998852    368999999999999996  47999987765

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.73  E-value=0.046  Score=37.72  Aligned_cols=36  Identities=22%  Similarity=0.479  Sum_probs=30.2

Q ss_pred             cCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEE
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQI   61 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQI   61 (236)
                      .|..|..    ...+||-++...+|..|.  ..|++|+++.|
T Consensus        16 ~C~~H~e----~L~lfC~~d~~~iC~~C~~s~eH~~H~~~~l   53 (59)
T 2yrg_A           16 HCARHGE----KLLLFCQEDGKVICWLCERSQEHRGHHTFPT   53 (59)
T ss_dssp             BCTTTCC----BCCEEETTTCSEECHHHHTSTTTTTCCEEEC
T ss_pred             cChhhCc----eeeeecCCCCcEEecccCCCCcCCCCcEeeH
Confidence            5999863    367999999999999996  47999988766

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=91.35  E-value=0.065  Score=37.90  Aligned_cols=37  Identities=22%  Similarity=0.613  Sum_probs=29.8

Q ss_pred             ccCccCCCCCCCCCceeecccccccCCccc-cCCCCCceeEE
Q 026591           21 NGCIIHEEERKNEKNIYCLDCCTSLCPHCL-SLHGSHRLLQI   61 (236)
Q Consensus        21 ~~C~~H~~~~knE~N~FCldC~~s~C~~C~-~~H~~HrvlQI   61 (236)
                      ..|..|..    .-++||.+|...+|..|. ..|++|+++-|
T Consensus        19 ~~C~~H~e----~l~lfC~~d~~~iC~~C~~~~H~~H~~~~l   56 (72)
T 2csv_A           19 RKCPVHGK----TMELFCQTDQTCICYLCMFQEHKNHSTVTV   56 (72)
T ss_dssp             CBCTTTCC----BCCEEESSSCCEECHHHHHTTTSSSCEEEH
T ss_pred             CcCcccCC----ceEEEeCCCCeEEccccCCCCCCCCCEecH
Confidence            36998842    368999999999999996 47999987665

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.64  E-value=0.032  Score=38.30  Aligned_cols=35  Identities=23%  Similarity=0.505  Sum_probs=28.7

Q ss_pred             cCccCCCCCCCCCceeecccccccCCcccc--CCCCCceeE
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCLS--LHGSHRLLQ   60 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~--~H~~HrvlQ   60 (236)
                      .|..|..    ...+||-+|...+|..|..  .|++|+++.
T Consensus        20 ~C~~H~e----~L~lfC~~d~~~iC~~C~~~~eH~~H~~~~   56 (57)
T 2egm_A           20 ICPKHQE----ALKLFCEVDEEAICVVCRESRSHKQHSVVP   56 (57)
T ss_dssp             BCTTTCC----BCCEEETTTTEEECHHHHHSHHHHSSCEEC
T ss_pred             cChhhCc----eeeEEcCCCCcEEecccCCCCCCCCCcEec
Confidence            5998842    3689999999999999974  699998764

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=90.19  E-value=0.094  Score=38.72  Aligned_cols=38  Identities=29%  Similarity=0.666  Sum_probs=30.0

Q ss_pred             ccCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEE
Q 026591           21 NGCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQI   61 (236)
Q Consensus        21 ~~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQI   61 (236)
                      ..|..|...   ..++||.+|...+|..|.  ..|++|+++.|
T Consensus        60 ~~C~~H~~e---~l~~fC~~~~~~iC~~C~~~~~H~~H~~~~l   99 (101)
T 2jun_A           60 LMCLEHEDE---KVNMYCVTDDQLICALCKLVGRHRDHQVAAL   99 (101)
T ss_dssp             CCCSSCSSS---CCCEEETTTTEEECHHHHHHTTTSSSCBCCC
T ss_pred             CcCcCcCCC---cceEECCCCCCccchhcCCCCCcCCCCeecC
Confidence            369888531   268999999999999996  47999987644

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=89.60  E-value=0.096  Score=37.75  Aligned_cols=38  Identities=29%  Similarity=0.698  Sum_probs=30.5

Q ss_pred             cCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEEE
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQIR   62 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQIR   62 (236)
                      .|..|...   .-++||.+|...+|..|.  ..|.+|+++-|-
T Consensus        20 ~C~~H~~e---~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~   59 (84)
T 2dja_A           20 TCLDHENE---KVNMYCVSDDQLICALCKLVGRHRDHQVASLN   59 (84)
T ss_dssp             CCSSCSSS---CCCEEETTTTEEECHHHHHTSTTTTCCBCCCC
T ss_pred             cCcCcCCc---cccEEcCCCCceEcccCcCCCCCCCCCccCHH
Confidence            69998531   268999999999999996  479999877663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	96.0
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.7
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.48
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	95.36
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	95.12
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	94.42

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0013  Score=43.14  Aligned_cols=37  Identities=35%  Similarity=0.796  Sum_probs=29.6

Q ss_pred             cCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEE
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQI   61 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQI   61 (236)
                      .|..|++.   .-++||.+|...+|..|.  ..|.+|.+..|
T Consensus         3 ~C~~H~~e---~l~~yC~~c~~~iC~~C~~~~~Hk~H~v~~l   41 (51)
T d2d8ua1           3 MCKEHEDE---KINIYCLTCEVPTCSMCKVFGIHKACEVAPL   41 (51)
T ss_dssp             CCSSCTTC---CCCSEESSSCCCCCSHHHHSSSTTSSCEECT
T ss_pred             CCcccCcC---cceEEcCCCCceECccccCcCCcCcCcCcCH
Confidence            58888642   358999999999999994  37999977655

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0015  Score=44.88  Aligned_cols=38  Identities=29%  Similarity=0.698  Sum_probs=30.6

Q ss_pred             cCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEEE
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQIR   62 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQIR   62 (236)
                      .|+.|.+.   .-++||.+|...+|..|.  ..|.+|.+.-|.
T Consensus        13 ~C~~H~~e---~l~~fC~~C~~~iC~~C~~~~~Hk~H~~~~i~   52 (71)
T d2djaa1          13 TCLDHENE---KVNMYCVSDDQLICALCKLVGRHRDHQVASLN   52 (71)
T ss_dssp             CCSSCSSS---CCCEEETTTTEEECHHHHHTSTTTTCCBCCCC
T ss_pred             cCcccCCc---cceeEcCCCCceeccccccCCCCCCCcCcCHH
Confidence            59998642   258999999999999995  369999887774

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0013  Score=42.66  Aligned_cols=37  Identities=27%  Similarity=0.687  Sum_probs=29.2

Q ss_pred             cCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEE
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQI   61 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQI   61 (236)
                      .|+.|++   .+-++||.+|...+|..|.  ..|++|.+..|
T Consensus         7 ~C~~H~~---e~l~~yC~~C~~~iC~~C~~~~~H~~H~~~~l   45 (47)
T d2dq5a1           7 MCLEHED---EKVNMYCVTDDQLICALCKLVGRHRDHQVAAL   45 (47)
T ss_dssp             BCSSCTT---SBEEEEETTTTEEEEHHHHHTSSTTSSCCCCS
T ss_pred             cchhhCC---CcceEEcCCCCccCCccCcCcCCcCCCeEeeC
Confidence            4888864   2358999999999999994  36999977543

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=95.36  E-value=0.0041  Score=38.93  Aligned_cols=34  Identities=38%  Similarity=0.699  Sum_probs=28.3

Q ss_pred             cCccCCCCCCCCCceeecccccccCCcccc--CCCCCcee
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCLS--LHGSHRLL   59 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~--~H~~Hrvl   59 (236)
                      .|+.|..    .-++||.+|...+|..|..  .|++|.++
T Consensus         2 ~C~~H~e----~l~lfC~~d~~~iC~~C~~~~~H~~H~v~   37 (39)
T d1frea_           2 KCSEHDE----RLKLYCKDDGTLSCVICRDSLKHASHNFL   37 (39)
T ss_dssp             CCCSSCS----SCCCCCCSSSSSSCCTTSSCSSCTTCCCC
T ss_pred             CCcccCc----ceeEEcccCCcEeeccCcCCCCcCCCcEe
Confidence            5888853    3689999999999999964  69999875

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0028  Score=42.66  Aligned_cols=36  Identities=22%  Similarity=0.599  Sum_probs=30.1

Q ss_pred             cCccCCCCCCCCCceeecccccccCCcccc-CCCCCceeEE
Q 026591           22 GCIIHEEERKNEKNIYCLDCCTSLCPHCLS-LHGSHRLLQI   61 (236)
Q Consensus        22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~-~H~~HrvlQI   61 (236)
                      .|+.|..    .-.+||.+|...+|..|+. .|++|.++.|
T Consensus        13 ~C~~H~e----~l~lyC~~c~~~iC~~C~~~~H~~H~~~~l   49 (59)
T d2csva1          13 KCPVHGK----TMELFCQTDQTCICYLCMFQEHKNHSTVTV   49 (59)
T ss_dssp             BCTTTCC----BCCEEESSSCCEECHHHHHTTTSSSCEEEH
T ss_pred             chhhhCC----ccceECCCCCceECcccCcccCCCCCeeCH
Confidence            6999942    3689999999999999975 6999988765

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.0077  Score=37.76  Aligned_cols=36  Identities=22%  Similarity=0.566  Sum_probs=29.3

Q ss_pred             ccCccCCCCCCCCCceeecccccccCCcccc--CCCCCceeE
Q 026591           21 NGCIIHEEERKNEKNIYCLDCCTSLCPHCLS--LHGSHRLLQ   60 (236)
Q Consensus        21 ~~C~~H~~~~knE~N~FCldC~~s~C~~C~~--~H~~HrvlQ   60 (236)
                      ..|+.|..    ..++||.+|...+|..|..  .|.+|+++=
T Consensus         2 ~~C~~H~e----~l~lfC~~d~~~iC~~C~~~~~H~~H~v~p   39 (40)
T d2dida1           2 SLCPQHHE----ALSLFCYEDQEAVCLICAISHTHRAHTVVP   39 (40)
T ss_dssp             CBCTTTCC----BCCEEESSSCSEECHHHHTSSTTTTSCEEE
T ss_pred             CcchhhCc----cceEEcccCCcEeeccCcCCCCcCCCcEec
Confidence            35888853    3789999999999999963  699998763