Citrus Sinensis ID: 026596

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MANGVEKESVLMMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKHGNGSHRSHNGRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKITCDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKT
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHccEEcccEEEEEEccccccccccEEEEEEEEcccEEEEEEcccccccccccHHHHHHcccccccccccccEEEEEcccEEcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccccccccccEEEEcccEEEEcccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEcHHHHHHHHcccccccEEEEEEccccccccccEEEEEEEcccEEEEEEEcccccccccccHHHHHHHccccccccccccEEEEEccccccccHHHHHHHHHHHHccccccccccccccccccHEEEEccccccEEEEEccHHHHHHHHHHHHcccccccccccccEEcccHHHHHHHHHHcccccccccccccEEEEcccEEEEEcccccccHHHHHHHccc
Coil and Loop (DISEMBL)
MANGVEKESVLMMFSDEELReisgvkrggdyievtcgctshrygdavgrlrvfsngdleitcectpgcnedkmtpgafekhsgreTARKWKNNVWVIangekvplSKTVLLKYYNqaskhgngshrshngrvchrdefvrcaRCNKERRFRLRTKEECLIHHnaladknwkcsdlpydkitcddeeERASRrvyrgcirsptckgctscvcfgcdicrfsdcscqtcidftrnakt
Flexible Loop (DISEMBL)
MANGVEKESVLMMFSDEELReisgvkrggdYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQAskhgngshrshngrvchrdefvrcarcnkerrfrlrtkeeclihhnaladknwkcsdLPYDKitcddeeerasrrvyrgcirsptckgctSCVCFGCDICRFSDCSCQTCIDFTRNAKT
Low Complexity Region (SEG)
MANGVEKESVLMMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKHGNGSHRSHNGRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKITCDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKT
Disordered region (IsUnstruct)
******************LREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCN*****************ARKWKNNVWVIANGEKVPLSKTVLLKYYNQA************GRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKITCDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFT*****
Disordered Region (DISOPRED)
************MFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNEDKMT***************WKNNVWVIANGEKVPLSKTVLLKYYN******************HRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKITCDD****************PTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNA**
Disordered Region (DISEMBL)
MANGVEKESVLMMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQAS**********NGRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKITCDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKT
Disordered Region (DISPRO)
*******ESVLMMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASK************VCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKITCDDEEERAS******CIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANGVEKESVLMMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKHGNGSHRSHNGRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKITCDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q8GZA8	237	Protein ULTRAPETALA 1 OS=	yes	no	0.953	0.949	0.755	1e-102
Q8S8I2	228	Protein ULTRAPETALA 2 OS=	no	no	0.919	0.951	0.695	6e-91

>sp|Q8GZA8|ULT1_ARATH Protein ULTRAPETALA 1 OS=Arabidopsis thaliana GN=ULT1 PE=1 SV=1

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 170/225 (75%), Positives = 195/225 (86%)

Query: 12  MMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNED 71
           M+F  EEL+E+SGV  GGDY+EV CGCTSHRYGDAV RLRVF  GDLEITCECTPGC+ED
Sbjct: 13  MLFKQEELQEMSGVNVGGDYVEVMCGCTSHRYGDAVARLRVFPTGDLEITCECTPGCDED 72

Query: 72  KMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKHGNGSHRSHNGR 131
           K+TP AFEKHSGRETARKWKNNVWVI  GEKVPLSKTVLLKYYN++SK  + S+RS   +
Sbjct: 73  KLTPAAFEKHSGRETARKWKNNVWVIIGGEKVPLSKTVLLKYYNESSKKCSRSNRSQGAK 132

Query: 132 VCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKITCDDEEERASR 191
           VCHRDEFV C  C KERRFRLR+++EC +HHNA+ D NWKCSD PYDKITC++EEER SR
Sbjct: 133 VCHRDEFVGCNDCGKERRFRLRSRDECRLHHNAMGDPNWKCSDFPYDKITCEEEEERGSR 192

Query: 192 RVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKT 236
           +VYRGC RSP+CKGCTSCVCFGC++CRFS+C+CQTC+DFT N K 
Sbjct: 193 KVYRGCTRSPSCKGCTSCVCFGCELCRFSECTCQTCVDFTSNVKA 237

Putative transcription factor that acts as a key negative regulator of cell accumulation in shoot and floral meristems. Negatively regulates the size of the WUSCHEL (WUS)-expressing organizing center in inflorescence meristems. May act by down-regulating expression of WUS.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8I2|ULT2_ARATH Protein ULTRAPETALA 2 OS=Arabidopsis thaliana GN=ULT2 PE=2 SV=1

 Score =  333 bits (854), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 187/223 (83%), Gaps = 6/223 (2%)

Query: 13  MFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNEDK 72
           +FS EEL+EISGV  G DY+EV CGCTSHRYGDAV RL++FS+G+L+ITC+CTP C EDK
Sbjct: 10  LFSKEELQEISGVHVGDDYVEVMCGCTSHRYGDAVARLKIFSDGELQITCQCTPACLEDK 69

Query: 73  MTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKHGNGSHRSHNGRV 132
           +TP AFEKHS RET+R W+NNVWV   G+KVPLSKTVLL+YYN+A K+ N S      +V
Sbjct: 70  LTPAAFEKHSERETSRNWRNNVWVFIEGDKVPLSKTVLLRYYNKALKNSNVS------KV 123

Query: 133 CHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKITCDDEEERASRR 192
            HRDEFV C+ C KERRFRLR++ EC +HH+A+A+ NWKC D PYDKITC++EEER SR+
Sbjct: 124 IHRDEFVGCSTCGKERRFRLRSRGECRMHHDAIAEPNWKCCDYPYDKITCEEEEERGSRK 183

Query: 193 VYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAK 235
           V+RGC RSP+CKGCTSCVCFGC +CRFSDC+CQTC+DFT NAK
Sbjct: 184 VFRGCTRSPSCKGCTSCVCFGCKLCRFSDCNCQTCLDFTTNAK 226

Putative transcription factor that acts as a key negative regulator of cell accumulation in shoot and floral meristems. Negatively regulates the size of the WUSCHEL (WUS)-expressing organizing center in inflorescence meristems. May act by down-regulating expression of WUS. Can compensate for mutant ULT1 protein when overexpressed.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
224126749	235	predicted protein [Populus trichocarpa]	0.995	1.0	0.881	1e-120
224127015	235	predicted protein [Populus trichocarpa]	0.995	1.0	0.872	1e-119
356542889	236	PREDICTED: protein ULTRAPETALA 1-like [G	1.0	1.0	0.877	1e-119
225447249	235	PREDICTED: protein ULTRAPETALA 1 [Vitis	0.944	0.948	0.910	1e-118
255637610	236	unknown [Glycine max]	1.0	1.0	0.868	1e-117
359807494	237	uncharacterized protein LOC100815782 [Gl	1.0	0.995	0.864	1e-116
449438068	235	PREDICTED: protein ULTRAPETALA 1-like [C	0.995	1.0	0.822	1e-112
388500952	233	unknown [Lotus japonicus]	0.983	0.995	0.795	1e-107
388510756	233	unknown [Lotus japonicus]	0.983	0.995	0.787	1e-106
297803264	237	hypothetical protein ARALYDRAFT_491956 [	0.995	0.991	0.731	1e-101

>gi|224126749|ref|XP_002319917.1| predicted protein [Populus trichocarpa] gi|118481891|gb|ABK92881.1| unknown [Populus trichocarpa] gi|222858293|gb|EEE95840.1| predicted protein [Populus trichocarpa]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/236 (88%), Positives = 222/236 (94%), Gaps = 1/236 (0%)

Query: 1   MANGVEKESVLMMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEI 60
           MANG E+E VL+ FS+EELRE+SGVKRGGDYIEV CGCTSHRYGDAVGRLRVF NG+LEI
Sbjct: 1   MANGAEREMVLL-FSEEELREMSGVKRGGDYIEVMCGCTSHRYGDAVGRLRVFINGELEI 59

Query: 61  TCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKH 120
           TCECTPGC+EDKMTP AFEKHSGRETARKWKNNVWVI NGEKVPL KTVLLKYYNQASK+
Sbjct: 60  TCECTPGCDEDKMTPAAFEKHSGRETARKWKNNVWVIVNGEKVPLVKTVLLKYYNQASKN 119

Query: 121 GNGSHRSHNGRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKI 180
           GNGSHRSHNGRVCHRDEFVRC +CNKERRFRLR+KEEC IHH+ALAD NWKC+D+PYDKI
Sbjct: 120 GNGSHRSHNGRVCHRDEFVRCNKCNKERRFRLRSKEECRIHHDALADANWKCADMPYDKI 179

Query: 181 TCDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKT 236
           TCDD+EERASRRVYRGC RSPTCKGCTSCVCFGC+ICRFSDCSCQTC DFTRNAK 
Sbjct: 180 TCDDDEERASRRVYRGCTRSPTCKGCTSCVCFGCEICRFSDCSCQTCTDFTRNAKV 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127015|ref|XP_002329362.1| predicted protein [Populus trichocarpa] gi|222870412|gb|EEF07543.1| predicted protein [Populus trichocarpa]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/236 (87%), Positives = 226/236 (95%), Gaps = 1/236 (0%)

Query: 1   MANGVEKESVLMMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEI 60
           MANGVE+E ++++FS+EELRE+SGVKRG +YIEVTCGCTSHRYGDAVGRLRVF NG+LEI
Sbjct: 1   MANGVERE-LVVLFSEEELREMSGVKRGEEYIEVTCGCTSHRYGDAVGRLRVFINGELEI 59

Query: 61  TCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKH 120
           TCECTPGC+EDKMTP AFEKHSGRETARKWKNNVWVI NGEKVPLSKTVLLKYYNQASK+
Sbjct: 60  TCECTPGCDEDKMTPAAFEKHSGRETARKWKNNVWVIVNGEKVPLSKTVLLKYYNQASKN 119

Query: 121 GNGSHRSHNGRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKI 180
           GNGSHRS+NGRVCHRDEFVRC++CNKERRFRLRTKEEC IHH+ALAD NWKC+D+P+DKI
Sbjct: 120 GNGSHRSNNGRVCHRDEFVRCSKCNKERRFRLRTKEECQIHHDALADANWKCADMPFDKI 179

Query: 181 TCDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKT 236
           TCDD+EERASRRVYRGC RSPTCKGCTSCVCFGC+ICRFSDCSCQTC DFTRNAK 
Sbjct: 180 TCDDDEERASRRVYRGCTRSPTCKGCTSCVCFGCEICRFSDCSCQTCTDFTRNAKV 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542889|ref|XP_003539897.1| PREDICTED: protein ULTRAPETALA 1-like [Glycine max]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/236 (87%), Positives = 215/236 (91%)

Query: 1   MANGVEKESVLMMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEI 60
           MANG+E+ES L +FS+EELRE+SGVKR GDY+EVTCGCTSHRYGDAVGRLRVF NG LEI
Sbjct: 1   MANGLERESGLTLFSEEELREVSGVKRVGDYVEVTCGCTSHRYGDAVGRLRVFVNGYLEI 60

Query: 61  TCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKH 120
           TCECTPGC EDK+TP AFEKHSGRETARKWKNNVWVI NGEKVPL KTVLLKYYNQ SK 
Sbjct: 61  TCECTPGCQEDKLTPSAFEKHSGRETARKWKNNVWVIVNGEKVPLCKTVLLKYYNQVSKA 120

Query: 121 GNGSHRSHNGRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKI 180
            NGSHRSHNGR CHRDEFVRC  CNKERRFRLRTKEEC IHH+ALAD NWKCSDLPYDKI
Sbjct: 121 ANGSHRSHNGRACHRDEFVRCTSCNKERRFRLRTKEECRIHHDALADANWKCSDLPYDKI 180

Query: 181 TCDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKT 236
           TCDDEEERASRRVYRGC RSPTCKGCTSCVCFGCDICRFSDCSCQTC DFT NAK 
Sbjct: 181 TCDDEEERASRRVYRGCTRSPTCKGCTSCVCFGCDICRFSDCSCQTCADFTNNAKA 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447249|ref|XP_002278664.1| PREDICTED: protein ULTRAPETALA 1 [Vitis vinifera] gi|147771900|emb|CAN75705.1| hypothetical protein VITISV_031418 [Vitis vinifera] gi|297739267|emb|CBI28918.3| unnamed protein product [Vitis vinifera]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/223 (91%), Positives = 213/223 (95%)

Query: 12  MMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNED 71
           +MFSDEELREISGVKRGGDY+EVTCGCTSHRYGDAVGRLRVF  GDLEITCECTPGC ED
Sbjct: 11  LMFSDEELREISGVKRGGDYVEVTCGCTSHRYGDAVGRLRVFIGGDLEITCECTPGCQED 70

Query: 72  KMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKHGNGSHRSHNGR 131
           K+TP AFEKHSGRETARKWKNNVWVI NGEKVPLSKTVLLKYYNQASK+ NGSHRSHNGR
Sbjct: 71  KLTPAAFEKHSGRETARKWKNNVWVIVNGEKVPLSKTVLLKYYNQASKNANGSHRSHNGR 130

Query: 132 VCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKITCDDEEERASR 191
           VCHRDEFVRC RCNKERRFRLR+KEEC IHH+ALAD NWKC DLPYDKITC+DEEERASR
Sbjct: 131 VCHRDEFVRCTRCNKERRFRLRSKEECRIHHDALADVNWKCPDLPYDKITCEDEEERASR 190

Query: 192 RVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNA 234
           RVYRGC+RSPTC+GCTSCVCFGC+ICRFSDCSCQTCIDFTRNA
Sbjct: 191 RVYRGCLRSPTCRGCTSCVCFGCEICRFSDCSCQTCIDFTRNA 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637610|gb|ACU19130.1| unknown [Glycine max]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/236 (86%), Positives = 213/236 (90%)

Query: 1   MANGVEKESVLMMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEI 60
           MANG+E+ES L +FS+EELRE+SGVKR GDY+EVTCGCTSHRYGDAVGRLRVF NG LEI
Sbjct: 1   MANGLERESGLTLFSEEELREVSGVKRVGDYVEVTCGCTSHRYGDAVGRLRVFVNGYLEI 60

Query: 61  TCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKH 120
           TCECTPGC EDK+TP AFEKHSGRETARKWKNNVWVI NGEKVPL KTVLLKYYNQ SK 
Sbjct: 61  TCECTPGCQEDKLTPSAFEKHSGRETARKWKNNVWVIVNGEKVPLCKTVLLKYYNQVSKA 120

Query: 121 GNGSHRSHNGRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKI 180
            NGSHRSHNGR CHRDEFVRC  CNKER FRLRTKEEC IHH+ALAD NWKCSDLPYDKI
Sbjct: 121 ANGSHRSHNGRACHRDEFVRCTSCNKERMFRLRTKEECRIHHDALADANWKCSDLPYDKI 180

Query: 181 TCDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKT 236
           TCDDEEERASRRVYRGC R PTCKGCTSCVCFGCDICRFSDCSCQTC DFT NAK 
Sbjct: 181 TCDDEEERASRRVYRGCTRFPTCKGCTSCVCFGCDICRFSDCSCQTCADFTNNAKA 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807494|ref|NP_001241143.1| uncharacterized protein LOC100815782 [Glycine max] gi|255636902|gb|ACU18784.1| unknown [Glycine max]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/237 (86%), Positives = 213/237 (89%), Gaps = 1/237 (0%)

Query: 1   MANGVEKESVLM-MFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLE 59
           MANG+E+ES L  +FS+EELRE+SGVKR GD +EVTCGCTSHRYGDAVGRLRVF NG LE
Sbjct: 1   MANGLERESGLTTLFSEEELREVSGVKRVGDCVEVTCGCTSHRYGDAVGRLRVFVNGYLE 60

Query: 60  ITCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASK 119
           ITCECTPGC EDK+TP AFEKHSGRETARKWKNNVWVI NGEKVPL KTVLLKYYNQ SK
Sbjct: 61  ITCECTPGCQEDKLTPSAFEKHSGRETARKWKNNVWVIVNGEKVPLCKTVLLKYYNQVSK 120

Query: 120 HGNGSHRSHNGRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDK 179
             NGSHRS NGR CHRDEFVRC  CNKERRFRLRTKEEC IHH+ALAD NWKCSDLPYDK
Sbjct: 121 AANGSHRSQNGRACHRDEFVRCTSCNKERRFRLRTKEECRIHHDALADANWKCSDLPYDK 180

Query: 180 ITCDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKT 236
           ITCDDEEERASRRVYRGC RSPTCKGCTSCVCFGCDICRFSDCSCQTC DFT NAK 
Sbjct: 181 ITCDDEEERASRRVYRGCTRSPTCKGCTSCVCFGCDICRFSDCSCQTCADFTNNAKA 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438068|ref|XP_004136812.1| PREDICTED: protein ULTRAPETALA 1-like [Cucumis sativus] gi|449493082|ref|XP_004159188.1| PREDICTED: protein ULTRAPETALA 1-like [Cucumis sativus]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/236 (82%), Positives = 215/236 (91%), Gaps = 1/236 (0%)

Query: 1   MANGVEKESVLMMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEI 60
           MA+GV+ E+  ++FS EEL E+SGVK GGD++EVTCGCTSHRYGD+VGRLR+F NG+LEI
Sbjct: 1   MASGVD-ENGFVLFSSEELSEMSGVKFGGDFVEVTCGCTSHRYGDSVGRLRIFVNGELEI 59

Query: 61  TCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKH 120
           TCECTPGC+EDK+TP AFEKHSGRETARKWKNNVWVI +G+KVPL KTVLLKYYNQA K+
Sbjct: 60  TCECTPGCHEDKLTPAAFEKHSGRETARKWKNNVWVIVDGDKVPLYKTVLLKYYNQALKN 119

Query: 121 GNGSHRSHNGRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKI 180
            NGS RS NGR CHRDEFVRC+ CNKERRFRLRTKEEC IHH+ALAD +W C+DLPYDKI
Sbjct: 120 SNGSSRSQNGRACHRDEFVRCSSCNKERRFRLRTKEECRIHHDALADSDWTCADLPYDKI 179

Query: 181 TCDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKT 236
           TCD +EERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAK 
Sbjct: 180 TCDTDEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKA 235

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500952|gb|AFK38542.1| unknown [Lotus japonicus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/235 (79%), Positives = 207/235 (88%), Gaps = 3/235 (1%)

Query: 1   MANGVEKESVLMMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEI 60
           MA G+E+ES   +FSDEEL E+ GVKR G+ +EVTCGCTSHRYGDAVGRLRVF+NGDLEI
Sbjct: 1   MATGLERESGFTLFSDEELSEVCGVKRVGNCVEVTCGCTSHRYGDAVGRLRVFANGDLEI 60

Query: 61  TCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKH 120
           +CECTPGC EDK+TP AFEKHSGRETA+KWKNN+WVI +GEKVPL KTVLLKYYNQ S+ 
Sbjct: 61  SCECTPGCTEDKLTPAAFEKHSGRETAKKWKNNIWVIVDGEKVPLYKTVLLKYYNQVSRG 120

Query: 121 GNGSHRSHNGRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKI 180
            NGS++  NG   HRDEFVRC  CNK RRFRLRTKEEC IHH+A+AD NWKCSDLPYDK+
Sbjct: 121 ANGSNKHQNG---HRDEFVRCTSCNKGRRFRLRTKEECRIHHDAVADANWKCSDLPYDKV 177

Query: 181 TCDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAK 235
           TCD+EEERASRRVYRGC RSPTCKGCTSCVCFGCD+CRFSDCSCQTC DFT NAK
Sbjct: 178 TCDNEEERASRRVYRGCNRSPTCKGCTSCVCFGCDVCRFSDCSCQTCTDFTTNAK 232

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510756|gb|AFK43444.1| unknown [Lotus japonicus]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/235 (78%), Positives = 205/235 (87%), Gaps = 3/235 (1%)

Query: 1   MANGVEKESVLMMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEI 60
           MA G+E+ES   +FSDEEL E+ GVKR G+ +EVTCGCTSHRYGD VGRLRVF+NGDLEI
Sbjct: 1   MATGLERESGFTLFSDEELSEVCGVKRVGNCVEVTCGCTSHRYGDTVGRLRVFANGDLEI 60

Query: 61  TCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKH 120
           +CECTPGC EDK+TP AFEKHSGRETA+KWKNN+WVI +GEKVPL KTVLLKYYNQ S+ 
Sbjct: 61  SCECTPGCTEDKLTPAAFEKHSGRETAKKWKNNIWVIVDGEKVPLYKTVLLKYYNQVSRG 120

Query: 121 GNGSHRSHNGRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKI 180
             GS++  NG   HRDEFVRC  CNKERRFRLRTKEEC IHH+A+AD NWKCSDLPYDK+
Sbjct: 121 TKGSNKHQNG---HRDEFVRCTSCNKERRFRLRTKEECRIHHDAVADANWKCSDLPYDKV 177

Query: 181 TCDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAK 235
           TCD+EEERASRRVYRGC RSPTCKGCTSCVCFGCD+CRFS CSCQTC DFT NAK
Sbjct: 178 TCDNEEERASRRVYRGCNRSPTCKGCTSCVCFGCDVCRFSGCSCQTCTDFTTNAK 232

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803264|ref|XP_002869516.1| hypothetical protein ARALYDRAFT_491956 [Arabidopsis lyrata subsp. lyrata] gi|297315352|gb|EFH45775.1| hypothetical protein ARALYDRAFT_491956 [Arabidopsis lyrata subsp. lyrata]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/235 (73%), Positives = 200/235 (85%)

Query: 2   ANGVEKESVLMMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEIT 61
           +N  E +   M+F  EEL+E+SGV  GGDY+EV CGCTSHRYGDAV RLRVF  GDLEI+
Sbjct: 3   SNEEEMQCGSMLFKQEELQEMSGVNVGGDYVEVMCGCTSHRYGDAVARLRVFPTGDLEIS 62

Query: 62  CECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKHG 121
           CECTPGC+EDK+TP AFEKHSGRETARKWKNNVWVI  GEKVPLSKTVLLKYYN++SK  
Sbjct: 63  CECTPGCDEDKLTPAAFEKHSGRETARKWKNNVWVIIGGEKVPLSKTVLLKYYNESSKKC 122

Query: 122 NGSHRSHNGRVCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKIT 181
           + S+RS   +VCHRDEFV C  C KERRFRLR+++EC +HHNA+AD NWKCSD PYDKIT
Sbjct: 123 SRSNRSQGAKVCHRDEFVGCNECGKERRFRLRSRDECRLHHNAMADANWKCSDFPYDKIT 182

Query: 182 CDDEEERASRRVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKT 236
           C++EEER SR+VYRGC RSP+CKGCTSCVCFGC++CRFS+C+CQTC+DFT N K 
Sbjct: 183 CEEEEERGSRKVYRGCTRSPSCKGCTSCVCFGCELCRFSECTCQTCVDFTSNVKA 237

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2827502	228	ULT2 "ULTRAPETALA 2" [Arabidop	0.919	0.951	0.695	7.3e-91

TAIR|locus:2827502 ULT2 "ULTRAPETALA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
 Identities = 155/223 (69%), Positives = 187/223 (83%)

Query:    13 MFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNEDK 72
             +FS EEL+EISGV  G DY+EV CGCTSHRYGDAV RL++FS+G+L+ITC+CTP C EDK
Sbjct:    10 LFSKEELQEISGVHVGDDYVEVMCGCTSHRYGDAVARLKIFSDGELQITCQCTPACLEDK 69

Query:    73 MTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKHGNGSHRSHNGRV 132
             +TP AFEKHS RET+R W+NNVWV   G+KVPLSKTVLL+YYN+A K+ N S      +V
Sbjct:    70 LTPAAFEKHSERETSRNWRNNVWVFIEGDKVPLSKTVLLRYYNKALKNSNVS------KV 123

Query:   133 CHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKITCDDEEERASRR 192
              HRDEFV C+ C KERRFRLR++ EC +HH+A+A+ NWKC D PYDKITC++EEER SR+
Sbjct:   124 IHRDEFVGCSTCGKERRFRLRSRGECRMHHDAIAEPNWKCCDYPYDKITCEEEEERGSRK 183

Query:   193 VYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAK 235
             V+RGC RSP+CKGCTSCVCFGC +CRFSDC+CQTC+DFT NAK
Sbjct:   184 VFRGCTRSPSCKGCTSCVCFGCKLCRFSDCNCQTCLDFTTNAK 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.449    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       236   0.00089  113 3  11 22  0.39    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  230 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.33u 0.43s 20.76t   Elapsed:  00:00:02
  Total cpu time:  20.33u 0.43s 20.76t   Elapsed:  00:00:02
  Start:  Fri May 10 21:28:28 2013   End:  Fri May 10 21:28:30 2013

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GZA8	ULT1_ARATH	No assigned EC number	0.7555	0.9533	0.9493	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
PF01342	82	SAND: SAND domain; InterPro: IPR000770 The SAND do	97.12
smart00258	73	SAND SAND domain.	95.93
PF07496	50	zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi	91.91

>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control

Probab=97.12  E-value=8.6e-05  Score=56.27  Aligned_cols=55  Identities=36%  Similarity=0.746  Sum_probs=36.9

Q ss_pred             CceEEEcccccceeecCcceeeEE--e-eCC--eeeEeeecCCCCCCCCCChhhhhhccccccccccccceEE
Q 026596           29 GDYIEVTCGCTSHRYGDAVGRLRV--F-SNG--DLEITCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWV   96 (236)
Q Consensus        29 edyvEV~CGcTs~rYGD~VGRLri--~-~~G--~~~ItCeC~PgC~~dkltp~aFEkHs~reta~kWkn~vWV   96 (236)
                      +.-|.|+||       +..|.|-.  + ..|  +-=|.++      ..-+||.+||+|+|++++.+||..|-|
T Consensus         8 ~~~lpVtCG-------~~~G~L~~~k~~~~g~~~kCI~~~------g~~~TP~eFE~~~G~~~sK~WK~SIr~   67 (82)
T PF01342_consen    8 DPELPVTCG-------DVKGTLYKKKFVKQGICGKCIQCE------GRWFTPSEFERHGGKGSSKDWKRSIRC   67 (82)
T ss_dssp             CSEEEEEET-------TEEEEEEHHHH-TTGTTSS-EEET------TEEE-HHHHHHHHTTCTCS-HHHHSEE
T ss_pred             CCeEeeEeC-------CeEEEEEHHHhhcccccCceEeeC------CcEECHHHHHhhcCcccCCCCCccEEE
Confidence            567999996       44555542  2 222  1123222      567999999999999999999999998

These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.

>smart00258 SAND SAND domain

Probab=95.93  E-value=0.0027  Score=48.32  Aligned_cols=56  Identities=27%  Similarity=0.503  Sum_probs=38.3

Q ss_pred             EEEcccccceeecCcceeeEEeeCCeeeEeeecCCCCCCCCCChhhhhhccccccccccccceEE
Q 026596           32 IEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWV   96 (236)
Q Consensus        32 vEV~CGcTs~rYGD~VGRLri~~~G~~~ItCeC~PgC~~dkltp~aFEkHs~reta~kWkn~vWV   96 (236)
                      |.|+||-       .-|.|-..--++ -|.+-|+-- ...=+||.+||+++|++++.+||..|=+
T Consensus         3 lpV~CG~-------~~g~L~~~kf~~-G~~~kCI~~-~~~~~TP~eFe~~~g~~~~K~WK~sIR~   58 (73)
T smart00258        3 LPVTCGT-------VKGILYKKKFKC-GISVKCIQY-EDKWFTPKEFEIEGGKGKSKDWKRSIRC   58 (73)
T ss_pred             cceeeCC-------eeeeeeHhhhhc-CcccCCccC-CCEEEChHHHHhhcCCcccCCcchheeE
Confidence            5678864       445554333222 355666532 4456899999999999999999998754

>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.91  E-value=0.06  Score=37.21  Aligned_cols=47  Identities=36%  Similarity=0.587  Sum_probs=22.0

Q ss_pred             cceeeeccccccccccccChhHHhhhhhhhcCCCcccCCCC-CCccccCcHHH
Q 026596          136 DEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLP-YDKITCDDEEE  187 (236)
Q Consensus       136 DEFvrCt~CgKeRRFrLrsk~ecr~yHdAl~~~~WtCsd~p-y~kitCdDdEE  187 (236)
                      |.+|.|.+|+|=|+.....-+..    +.+.+ .|+|++-| ...-+|+..||
T Consensus         1 ~~WVQCd~C~KWR~lp~~~~~~~----~~~~d-~W~C~~n~~~~~~sC~~pee   48 (50)
T PF07496_consen    1 DYWVQCDSCLKWRRLPEEVDPIR----EELPD-PWYCSMNPDPPFNSCDAPEE   48 (50)
T ss_dssp             -EEEE-TTT--EEEE-CCHHCTS----CCSST-T--GGGSS-CCC-STTS--S
T ss_pred             CeEEECCCCCceeeCChhhCccc----ccCCC-eEEcCCCCCCCCCCCCCccc
Confidence            56899999999999762111100    12233 89999976 23366877665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
1oqj_A	97	Glucocorticoid modulatory element binding protein-	92.81
1h5p_A	95	Nuclear autoantigen SP100-B; transcription, DNA bi	91.4
1ufn_A	94	Putative nuclear protein homolog 5830484A20RIK; SA	90.75
2e61_A	69	Zinc finger CW-type PWWP domain protein 1; ZF-CW d	90.48
2l7p_A	100	Histone-lysine N-methyltransferase ASHH2; CW-domai	83.49

>1oqj_A Glucocorticoid modulatory element binding protein-1; SAND domain, alpha-beta fold, KDWK motif, zinc-binding motif, DNA binding protein; 1.55A {Homo sapiens} SCOP: d.217.1.1

Probab=92.81  E-value=0.019  Score=44.69  Aligned_cols=44  Identities=20%  Similarity=0.537  Sum_probs=31.8

Q ss_pred             CCChhhhhhccccccccccccceEEEeCCccccc---chhhHHHHhhhhhc
Q 026596           72 KMTPGAFEKHSGRETARKWKNNVWVIANGEKVPL---SKTVLLKYYNQASK  119 (236)
Q Consensus        72 kltp~aFEkHs~reta~kWkn~vWV~~~~~kvpL---~kT~LlkyY~~~~~  119 (236)
                      =+||.+||..+||++++.||..|=+  +|  .||   -+--+|.+|.|...
T Consensus        42 w~TP~EFe~~~gk~~sKdWK~sIR~--~G--~~L~~Lme~g~L~~~~h~~~   88 (97)
T 1oqj_A           42 LISPKHFVHLAGKSTLKDWKRAIRL--GG--IMLRKMMDSGQIDFYQHDKV   88 (97)
T ss_dssp             EECHHHHHHHTTCGGGSCHHHHSEE--TT--EEHHHHHHTTSSCCTTTTTC
T ss_pred             EEChHHHhhhcCcCCCCCcchheEE--CC--eEHHHHHHCCcccccCcCCc
Confidence            4799999999999999999999853  44  333   23455666666543

>1h5p_A Nuclear autoantigen SP100-B; transcription, DNA binding, SAND domain, KDWK, nuclear protein, alternative splicing; NMR {Homo sapiens} SCOP: d.217.1.1

Probab=91.40  E-value=0.029  Score=43.66  Aligned_cols=25  Identities=28%  Similarity=0.567  Sum_probs=22.7

Q ss_pred             CCChhhhhhccccccccccccceEE
Q 026596           72 KMTPGAFEKHSGRETARKWKNNVWV   96 (236)
Q Consensus        72 kltp~aFEkHs~reta~kWkn~vWV   96 (236)
                      =+||.+||..+|++++..||..|-+
T Consensus        44 w~TP~EFe~~~g~~~sKdWKrSIR~   68 (95)
T 1h5p_A           44 WFTPREFEIEGDRGASKNWKLSIRC   68 (95)
T ss_dssp             EECHHHHHHHHTCSTTCCHHHHCEE
T ss_pred             EEChHHhhhhcCcccCcCcceeeEE
Confidence            3799999999999999999999854

>1ufn_A Putative nuclear protein homolog 5830484A20RIK; SAND domain, KDWK motif, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.217.1.1

Probab=90.75  E-value=0.045  Score=42.51  Aligned_cols=26  Identities=31%  Similarity=0.573  Sum_probs=23.9

Q ss_pred             CCCChhhhhhccccccccccccceEE
Q 026596           71 DKMTPGAFEKHSGRETARKWKNNVWV   96 (236)
Q Consensus        71 dkltp~aFEkHs~reta~kWkn~vWV   96 (236)
                      .-+||.+||..+|++++..||..|-+
T Consensus        48 ~w~TP~EFe~~~g~~~sKdWKrSIr~   73 (94)
T 1ufn_A           48 DWLTVKEFLNEGGRATSKDWKGVIRC   73 (94)
T ss_dssp             CEECHHHHHHHHTCTTCSCHHHHCEE
T ss_pred             cEEChHHhhhhcCcccccCcceeeEE
Confidence            35899999999999999999999876

>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*

Probab=90.48  E-value=0.22  Score=36.12  Aligned_cols=50  Identities=26%  Similarity=0.465  Sum_probs=34.0

Q ss_pred             ccccccceeeec--cccccccccccChhHHhhhhhhhcCCCcccCCCCCCcc-ccCcHHH
Q 026596          131 RVCHRDEFVRCA--RCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKI-TCDDEEE  187 (236)
Q Consensus       131 r~~HRDEFvrCt--~CgKeRRFrLrsk~ecr~yHdAl~~~~WtCsd~py~ki-tCdDdEE  187 (236)
                      .+-+-+.+|.|.  .|+|=||+.+..-+.       .....|+|++.|.... .|+..||
T Consensus        11 ~~~~~~~WVQCd~p~C~KWR~LP~~~~~~-------~lpd~W~C~mN~d~~~~~Cs~pEE   63 (69)
T 2e61_A           11 GFGQCLVWVQCSFPNCGKWRRLCGNIDPS-------VLPDNWSCDQNTDVQYNRCDIPEE   63 (69)
T ss_dssp             SCCCCCCEEECSSTTTCCEEECCSSCCTT-------TSCTTCCGGGCSCGGGCSSSSCCC
T ss_pred             CCCCCCeEEEeCccccCcccCCccccccc-------cCCCcCEeCCCCCCccCCCCCCcc
Confidence            445778999999  999999998765331       1235899999873222 2554443

>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}

Probab=83.49  E-value=0.2  Score=38.94  Aligned_cols=48  Identities=23%  Similarity=0.450  Sum_probs=32.9

Q ss_pred             cccceeeeccccccccccccChhHHhhhhhhhcCCCcccCCCCC-CccccCcHHH
Q 026596          134 HRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPY-DKITCDDEEE  187 (236)
Q Consensus       134 HRDEFvrCt~CgKeRRFrLrsk~ecr~yHdAl~~~~WtCsd~py-~kitCdDdEE  187 (236)
                      .-+.+|.|..|.|=||+....-+...      ....|+|+.-|. ..-.|+..||
T Consensus        24 ~~~~WVQCD~C~KWRrLP~~~~~~~~------~pd~W~C~mN~D~~~nsCs~PEE   72 (100)
T 2l7p_A           24 TESAWVRCDDCFKWRRIPASVVGSID------ESSRWICMNNSDKRFADCSKSQE   72 (100)
T ss_dssp             SSSEEEECTTTCCEEEECHHHHTTST------TSSCCCGGGSSCSSSCSTTSCCS
T ss_pred             CCCeEEeeCCCCccccCChhHccccC------CCCCceeCCCCCCCCCCCCCccC
Confidence            46789999999999998754321111      147899999874 2345875554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1ufna_	94	d.217.1.1 (A:) Putative nuclear protein homolog 58	4e-07
d1h5pa_	95	d.217.1.1 (A:) Nuclear autoantigen Sp100b {Human (	0.003

>d1ufna_ d.217.1.1 (A:) Putative nuclear protein homolog 5830484a20rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: SAND domain-like
superfamily: SAND domain-like
family: SAND domain
domain: Putative nuclear protein homolog 5830484a20rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (106), Expect = 4e-07
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 12/65 (18%)

Query: 32 IEVTCGCTSHRYGDAVGRL--RVFSNGDLEITCECTPGCNEDKMTPGAFEKHSGRETARK 89
          + VTCG        A G L       G    + +C      D +T   F    GR T++ 
Sbjct: 17 LPVTCG-------KAKGTLFQEKLKQG---ASKKCIQNEAGDWLTVKEFLNEGGRATSKD 66

Query: 90 WKNNV 94
          WK  +
Sbjct: 67 WKGVI 71

>d1h5pa_ d.217.1.1 (A:) Nuclear autoantigen Sp100b {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: SAND domain-like
superfamily: SAND domain-like
family: SAND domain
domain: Nuclear autoantigen Sp100b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.003
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 12/65 (18%)

Query: 32 IEVTCGCTSHRYGDAVGRL--RVFSNGDLEITCECTPGCNEDKMTPGAFEKHSGRETARK 89
          + VTCG       +  G L    F  G  +   +C    ++   TP  FE    R  ++ 
Sbjct: 12 LPVTCG-------EVKGTLYKERFKQGTSK---KCIQSEDKKWFTPREFEIEGDRGASKN 61

Query: 90 WKNNV 94
          WK ++
Sbjct: 62 WKLSI 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1ufna_	94	Putative nuclear protein homolog 5830484a20rik {Mo	97.96
d1oqja_	90	Glucocorticoid modulatory element binding protein-	94.12
d1h5pa_	95	Nuclear autoantigen Sp100b {Human (Homo sapiens) [	91.83

>d1ufna_ d.217.1.1 (A:) Putative nuclear protein homolog 5830484a20rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SAND domain-like
superfamily: SAND domain-like
family: SAND domain
domain: Putative nuclear protein homolog 5830484a20rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=2.7e-07  Score=69.65  Aligned_cols=57  Identities=30%  Similarity=0.551  Sum_probs=46.7

Q ss_pred             ceEEEcccccceeecCcceee--EEeeCCeeeEeeecCCCCCCCCCChhhhhhccccccccccccceEE
Q 026596           30 DYIEVTCGCTSHRYGDAVGRL--RVFSNGDLEITCECTPGCNEDKMTPGAFEKHSGRETARKWKNNVWV   96 (236)
Q Consensus        30 dyvEV~CGcTs~rYGD~VGRL--ri~~~G~~~ItCeC~PgC~~dkltp~aFEkHs~reta~kWkn~vWV   96 (236)
                      .-|.|+|       |+..|.|  +.|..|   |.+.|+.-.....+||.+||+|+|++++.+||..|-+
T Consensus        15 ~~LpVtC-------G~~~G~L~~~kf~~G---~~~kCI~~~~g~w~TP~eFe~~~gk~~~K~WK~sIr~   73 (94)
T d1ufna_          15 PTLPVTC-------GKAKGTLFQEKLKQG---ASKKCIQNEAGDWLTVKEFLNEGGRATSKDWKGVIRC   73 (94)
T ss_dssp             SEEEEEE-------TTEEEEEEHHHHHSC---TTSCCEECTTCCEECHHHHHHHHTCTTCSCHHHHCEE
T ss_pred             CceeeEe-------CCcEEEEEHhHccCC---ceecceEeCCCcEECHHHHHHhcCccccCCCcccEEE
Confidence            4689999       6788888  444566   5677766555678999999999999999999999976

>d1oqja_ d.217.1.1 (A:) Glucocorticoid modulatory element binding protein-1 (Gmeb1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SAND domain-like
superfamily: SAND domain-like
family: SAND domain
domain: Glucocorticoid modulatory element binding protein-1 (Gmeb1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.004  Score=46.10  Aligned_cols=25  Identities=24%  Similarity=0.618  Sum_probs=23.0

Q ss_pred             CCCChhhhhhccccccccccccceE
Q 026596           71 DKMTPGAFEKHSGRETARKWKNNVW   95 (236)
Q Consensus        71 dkltp~aFEkHs~reta~kWkn~vW   95 (236)
                      .-+||.+||+-+||+++..||..|=
T Consensus        37 ~w~TP~EFe~~~gk~~sK~WK~sIR   61 (90)
T d1oqja_          37 QLISPKHFVHLAGKSTLKDWKRAIR   61 (90)
T ss_dssp             EEECHHHHHHHTTCGGGSCHHHHSE
T ss_pred             EEECHHHHhhhcCccccCCCchhEE
Confidence            4579999999999999999999985

>d1h5pa_ d.217.1.1 (A:) Nuclear autoantigen Sp100b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SAND domain-like
superfamily: SAND domain-like
family: SAND domain
domain: Nuclear autoantigen Sp100b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.012  Score=43.98  Aligned_cols=26  Identities=27%  Similarity=0.552  Sum_probs=24.0

Q ss_pred             CCCChhhhhhccccccccccccceEE
Q 026596           71 DKMTPGAFEKHSGRETARKWKNNVWV   96 (236)
Q Consensus        71 dkltp~aFEkHs~reta~kWkn~vWV   96 (236)
                      .-+||.+||..+||+++..||..|-+
T Consensus        43 ~w~TP~EFe~~~Gk~~sKdWK~SIR~   68 (95)
T d1h5pa_          43 KWFTPREFEIEGDRGASKNWKLSIRC   68 (95)
T ss_dssp             EEECHHHHHHHHTCSTTCCHHHHCEE
T ss_pred             cEeCHHHHhhccCCcccCCCcccEEE
Confidence            35899999999999999999999976