Citrus Sinensis ID: 026598

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMVSVL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHccccccccccEEEEEccEEEEEccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEEEEHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEccEEEEEEcccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MFSSNLIGFILAVVSSAFIGSSFIIKKKglrkagangaragsggygylleplwWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMivlhapleesLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCaprygqtnILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMVSVL
Flexible Loop (DISEMBL)
MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGangaragsggyGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMVSVL
Low Complexity Region (SEG)
MFSSNLIGFILAVVSSAFIGSSFIIkkkglrkagangaragsggygylLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMVSVL
Disordered region (IsUnstruct)
****NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMV***
Disordered Region (DISOPRED)
*FSSNLIGFILAVVSSAFIGSSFIIKKKGLR*************YGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP******SVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMVSVL
Disordered Region (DISEMBL)
MFSSNLIGFILAVVSSAFIGSSFIIKKK**********RAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMVSVL
Disordered Region (DISPRO)
**SSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMVSVL
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMVSVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q5R7Q3	360	Magnesium transporter NIP	yes	no	0.953	0.625	0.517	1e-58
Q8N8Q9	360	Magnesium transporter NIP	yes	no	0.953	0.625	0.517	1e-58
Q9JJC8	359	Magnesium transporter NIP	yes	no	0.953	0.626	0.517	2e-58
Q3SWX0	360	Magnesium transporter NIP	yes	no	0.953	0.625	0.517	2e-58
Q8BZF2	406	Magnesium transporter NIP	no	no	0.953	0.554	0.477	2e-52
Q0D2K0	466	Magnesium transporter NIP	no	no	0.953	0.482	0.477	2e-51
Q8BMW7	416	Magnesium transporter NIP	no	no	0.949	0.538	0.515	3e-49
Q5RDB8	410	Magnesium transporter NIP	no	no	0.953	0.548	0.517	4e-44
Q6NVV3	410	Magnesium transporter NIP	no	no	0.953	0.548	0.508	2e-43
Q7RTP0	329	Magnesium transporter NIP	no	no	0.800	0.574	0.438	8e-38

>sp|Q5R7Q3|NIPA2_PONAB Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1

 Score =  226 bits (575), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/226 (51%), Positives = 155/226 (68%), Gaps = 1/226 (0%)

Query: 7   IGFILAVVSSAFIGSSFIIKKKGLRKAGANGA-RAGSGGYGYLLEPLWWVGMFTMIVGEI 65
           IG  LA+ SS FIG SFI+KKKGL +    G+ RAG GG+ YL E LWW G+ +M  GE+
Sbjct: 12  IGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEV 71

Query: 66  ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125
           ANF AY +APA LVTPLGALS++VSA+L+ + LNE+L   G +GCLL ++GST++V+HAP
Sbjct: 72  ANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAP 131

Query: 126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185
            EE + ++ E+      P F+++   VV VAL+LI    PR+GQTNIL+YI ICSVIG+ 
Sbjct: 132 KEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAF 191

Query: 186 TVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
           +V  VK +GIAIK    G    +    WI  +  + CV TQ+NYLN
Sbjct: 192 SVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLN 237

Acts as a selective Mg(2+) transporter.
Pongo abelii (taxid: 9601)

>sp|Q8N8Q9|NIPA2_HUMAN Magnesium transporter NIPA2 OS=Homo sapiens GN=NIPA2 PE=2 SV=1

 Score =  226 bits (575), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/226 (51%), Positives = 155/226 (68%), Gaps = 1/226 (0%)

Query: 7   IGFILAVVSSAFIGSSFIIKKKGLRKAGANGA-RAGSGGYGYLLEPLWWVGMFTMIVGEI 65
           IG  LA+ SS FIG SFI+KKKGL +    G+ RAG GG+ YL E LWW G+ +M  GE+
Sbjct: 12  IGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEV 71

Query: 66  ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125
           ANF AY +APA LVTPLGALS++VSA+L+ + LNE+L   G +GCLL ++GST++V+HAP
Sbjct: 72  ANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAP 131

Query: 126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185
            EE + ++ E+      P F+++   VV VAL+LI    PR+GQTNIL+YI ICSVIG+ 
Sbjct: 132 KEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAF 191

Query: 186 TVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
           +V  VK +GIAIK    G    +    WI  +  + CV TQ+NYLN
Sbjct: 192 SVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLN 237

Acts as a selective Mg(2+) transporter.

Homo sapiens (taxid: 9606)

>sp|Q9JJC8|NIPA2_MOUSE Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1

 Score =  225 bits (574), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/226 (51%), Positives = 154/226 (68%), Gaps = 1/226 (0%)

Query: 7   IGFILAVVSSAFIGSSFIIKKKGLRKAGANGA-RAGSGGYGYLLEPLWWVGMFTMIVGEI 65
           IG  LA+ SS FIG SFI+KKKGL +    G+ RAG GG+ YL E LWW G+ +M  GE+
Sbjct: 12  IGLGLAMTSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEV 71

Query: 66  ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125
           ANF AY +APA LVTPLGALS++VSA+L+ + LNE+L   G +GCLL ++GST++V+HAP
Sbjct: 72  ANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAP 131

Query: 126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185
            EE + ++ E+      P F+++   VV VAL+ I    PR+GQTNIL+YI ICSVIG+ 
Sbjct: 132 KEEEIETLNEMSHKLGDPGFVVFATFVVIVALIFIFVVGPRHGQTNILVYITICSVIGAF 191

Query: 186 TVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
           +V  VK +GIAIK  L G    +    WI     + CV TQ+NYLN
Sbjct: 192 SVSCVKGLGIAIKELLAGKPVLQHPLAWILLFSLVVCVSTQINYLN 237

Acts as a selective Mg(2+) transporter.

Mus musculus (taxid: 10090)

>sp|Q3SWX0|NIPA2_BOVIN Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/226 (51%), Positives = 155/226 (68%), Gaps = 1/226 (0%)

Query: 7   IGFILAVVSSAFIGSSFIIKKKGL-RKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEI 65
           IG  LA+ SS FIG SFI+KKKGL R A     RAG GG+ YL E LWW G+ +M  GE+
Sbjct: 12  IGLGLAMSSSIFIGGSFILKKKGLLRLARKGSTRAGQGGHAYLKEWLWWAGLLSMGAGEV 71

Query: 66  ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125
           ANF AY +APA LVTPLGALS++VSA+L+ + LNE+L   G +GCLL ++GST++V+HAP
Sbjct: 72  ANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAP 131

Query: 126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185
            EE + ++ E+      P F+++   VV V+L+LI    PR+GQTNIL+YI ICSVIG++
Sbjct: 132 KEEEIETLNEMSHKLGDPGFVVFATLVVIVSLILIFVVGPRHGQTNILVYITICSVIGAV 191

Query: 186 TVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
           +V   K +GIAIK    G    +   TWI  +  + CV TQ+NYLN
Sbjct: 192 SVSCAKGLGIAIKELFAGKPVLQHPLTWILLLSLIVCVSTQINYLN 237

Acts as a selective Mg(2+) transporter.

Bos taurus (taxid: 9913)

>sp|Q8BZF2|NIPA4_MOUSE Magnesium transporter NIPA4 OS=Mus musculus GN=Nipal4 PE=1 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 153/226 (67%), Gaps = 1/226 (0%)

Query: 7   IGFILAVVSSAFIGSSFIIKKKGLRKAGANGA-RAGSGGYGYLLEPLWWVGMFTMIVGEI 65
           IG  LA +S   IG+S I+KKKGL +  A GA RA +GGYGYL +P+WW GM TM  GE+
Sbjct: 60  IGVGLAFLSCFLIGTSVILKKKGLIRLVATGATRAVNGGYGYLKDPMWWAGMATMSAGEV 119

Query: 66  ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125
           ANF AY +APA +VTPLGALS+++SA+ + + L E L  +G LGC++C+ GST++V+HAP
Sbjct: 120 ANFGAYAFAPATVVTPLGALSVLISAIFSSYCLGESLNLLGKLGCVICMAGSTVMVIHAP 179

Query: 126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185
            EE + +V E+        F+++   +V   L+LI   APRYGQ NILIYI ICSVIGS 
Sbjct: 180 KEEKVTTVAEMASKMKDTGFIVFAVLLVVSCLILIFIVAPRYGQRNILIYIIICSVIGSF 239

Query: 186 TVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
           +V +VK +G+ I+   +GL   +    +I +++    +I Q+N+LN
Sbjct: 240 SVTAVKGLGVTIRNFFQGLPVVRHPLPYILSLILGLSIIIQVNFLN 285

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Ba(2+), Mn(2+), Sr(2+) and Co(2+) but to a much less extent than Mg(2+). May be a receptor for ligands (trioxilins A3 and B3) from the hepoxilin pathway.

Mus musculus (taxid: 10090)

>sp|Q0D2K0|NIPA4_HUMAN Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 152/226 (67%), Gaps = 1/226 (0%)

Query: 7   IGFILAVVSSAFIGSSFIIKKKGLRKAGANGA-RAGSGGYGYLLEPLWWVGMFTMIVGEI 65
           IG  LA +SS  IGSS I+KKKGL +  A GA RA  GG+GYL + +WW G  TM  GE+
Sbjct: 120 IGLGLAFLSSFLIGSSVILKKKGLLRLVATGATRAVDGGFGYLKDAMWWAGFLTMAAGEV 179

Query: 66  ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125
           ANF AY +APA +VTPLGALS+++SA+L+ + L E L  +G LGC++CV GST++V+HAP
Sbjct: 180 ANFGAYAFAPATVVTPLGALSVLISAILSSYFLRESLNLLGKLGCVICVAGSTVMVIHAP 239

Query: 126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185
            EE + ++ E+        F+++   ++   L+LI   APRYGQ NILIYI ICSVIG+ 
Sbjct: 240 EEEKVTTIMEMASKMKDTGFIVFAVLLLVSCLILIFVIAPRYGQRNILIYIIICSVIGAF 299

Query: 186 TVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
           +V +VK +GI IK   +GL   +    +I +++    + TQ+N+LN
Sbjct: 300 SVAAVKGLGITIKNFFQGLPVVRHPLPYILSLILALSLSTQVNFLN 345

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Ba(2+), Mn(2+), Sr(2+) and Co(2+) but to a much less extent than Mg(2+) (By similarity). May be a receptor for ligands (trioxilins A3 and B3) from the hepoxilin pathway.

Homo sapiens (taxid: 9606)

>sp|Q8BMW7|NIPA3_MOUSE Magnesium transporter NIPA3 OS=Mus musculus GN=Nipal1 PE=1 SV=2

 Score =  195 bits (495), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/227 (51%), Positives = 158/227 (69%), Gaps = 3/227 (1%)

Query: 7   IGFILAVVSSAFIGSSFIIKKKGLRKAGANG-ARAGSGGYGYLLEPLWWVGMFTMIVGEI 65
           +G +LA+ SS FIGSSFI+KKKGL +    G  RAG GG+ YL E LWW G+ +M  GE 
Sbjct: 70  VGLVLAISSSVFIGSSFILKKKGLLQLADKGITRAGQGGHSYLKEWLWWAGLLSMGAGEA 129

Query: 66  ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125
           ANF AY +APA LVTPLGALS+++SA+L+ + LNE+L   G +GC+L V+GST++V+HAP
Sbjct: 130 ANFAAYAFAPATLVTPLGALSVLISAILSSYFLNERLNIHGKIGCILSVLGSTVMVIHAP 189

Query: 126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185
            E  + S+ E+ +    P F+ +   +  ++LVLIL  AP+ GQTNIL+YI ICS+IG+ 
Sbjct: 190 QEGEVTSLHEMEMKLRDPGFVSFAVIISVISLVLILIVAPKKGQTNILVYIAICSLIGAF 249

Query: 186 TVMSVKAIGIAIKLTLEGLNQAKCIETWI-FAMVALTCVITQLNYLN 231
           +V SVK +GIAIK  LE     K    +I   M+AL+ V TQ+NYLN
Sbjct: 250 SVSSVKGLGIAIKELLERKPVYKDPLFFILLTMLALS-VTTQINYLN 295

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+), Cu(2+) and Co(2+) but to a much less extent than Mg(2+).

Mus musculus (taxid: 10090)

>sp|Q5RDB8|NIPA3_PONAB Magnesium transporter NIPA3 OS=Pongo abelii GN=NIPAL1 PE=2 SV=1

 Score =  178 bits (451), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/226 (51%), Positives = 158/226 (69%), Gaps = 1/226 (0%)

Query: 7   IGFILAVVSSAFIGSSFIIKKKGLRKAGANG-ARAGSGGYGYLLEPLWWVGMFTMIVGEI 65
           +G +LAV SS FIGSSFI+KKKGL +  + G  RAG GG+ YL E LWWVG+ +M VGE 
Sbjct: 70  VGLVLAVSSSIFIGSSFILKKKGLLQLASKGITRAGQGGHSYLKEWLWWVGLLSMGVGEA 129

Query: 66  ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125
           ANF AY +APA LVTPLGALS+++SA+L+ + LNE L   G +GC+L ++GST++V+HAP
Sbjct: 130 ANFAAYAFAPATLVTPLGALSVLISAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAP 189

Query: 126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185
            EE + S+ E+ +    P F+ +   V  ++LVLIL  AP+ GQTNIL+YI ICS+IG+ 
Sbjct: 190 QEEEVTSLHEMEMKLRDPGFISFAVIVTVISLVLILIVAPKKGQTNILVYISICSLIGAF 249

Query: 186 TVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
           +V SVK +GIAIK  +E     K    ++   V +  V TQ+NYLN
Sbjct: 250 SVSSVKGLGIAIKELIEWKPVYKHPLVFVLLAVLVLSVTTQINYLN 295

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+), Cu(2+) and Co(2+) but to a much less extent than Mg(2+).

Pongo abelii (taxid: 9601)

>sp|Q6NVV3|NIPA3_HUMAN Magnesium transporter NIPA3 OS=Homo sapiens GN=NIPAL1 PE=2 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/226 (50%), Positives = 157/226 (69%), Gaps = 1/226 (0%)

Query: 7   IGFILAVVSSAFIGSSFIIKKKGLRKAGANG-ARAGSGGYGYLLEPLWWVGMFTMIVGEI 65
           +G +LAV SS FIGSSFI+KKKGL +  + G  RAG GG+ YL E LWWVG+ +M  GE 
Sbjct: 70  VGLVLAVSSSIFIGSSFILKKKGLLQLASKGFTRAGQGGHSYLKEWLWWVGLLSMGAGEA 129

Query: 66  ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125
           ANF AY +APA LVTPLGALS+++SA+L+ + LNE L   G +GC+L ++GST++V+HAP
Sbjct: 130 ANFAAYAFAPATLVTPLGALSVLISAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAP 189

Query: 126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185
            EE + S+ E+ +    P F+ +   +  ++LVLIL  AP+ GQTNIL+YI ICS+IG+ 
Sbjct: 190 QEEEVTSLHEMEMKLRDPGFISFAVIITVISLVLILIVAPKKGQTNILVYISICSLIGAF 249

Query: 186 TVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
           +V SVK +GIAIK  +E     K    ++   V +  V TQ+NYLN
Sbjct: 250 SVSSVKGLGIAIKELIEWKPVYKHPLVFVLLAVLVLSVTTQINYLN 295

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+), Cu(2+) and Co(2+) but to a much less extent than Mg(2+).

Homo sapiens (taxid: 9606)

>sp|Q7RTP0|NIPA1_HUMAN Magnesium transporter NIPA1 OS=Homo sapiens GN=NIPA1 PE=1 SV=1

 Score =  157 bits (396), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 86/196 (43%), Positives = 124/196 (63%), Gaps = 7/196 (3%)

Query: 7   IGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIA 66
           +G  +AVVSS   GS+F+++KKG+        RA   G  YL + +WW G   M VG+I 
Sbjct: 30  LGLGVAVVSSLVNGSTFVLQKKGI-------VRAKRRGTSYLTDIVWWAGTIAMAVGQIG 82

Query: 67  NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126
           NF+AY   P VLVTPLGAL +   ++LA ++L EKL  +G LGCLL   GS ++++H+P 
Sbjct: 83  NFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSPK 142

Query: 127 EESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLT 186
            ES+ +  E+    T P F+ Y+  V+ + L+LI + AP +G TNI++YI ICS++GS T
Sbjct: 143 SESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFT 202

Query: 187 VMSVKAIGIAIKLTLE 202
           V S K IG+A +  L 
Sbjct: 203 VPSTKGIGLAAQDILH 218

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
224056096	311	predicted protein [Populus trichocarpa]	0.983	0.745	0.844	1e-109
356516417	345	PREDICTED: magnesium transporter NIPA2-l	0.983	0.672	0.806	1e-106
356508914	344	PREDICTED: magnesium transporter NIPA2-l	0.983	0.674	0.797	1e-104
225460464	347	PREDICTED: magnesium transporter NIPA2 [	0.974	0.662	0.8	1e-104
356512886	344	PREDICTED: magnesium transporter NIPA2-l	0.983	0.674	0.801	1e-103
224126885	311	predicted protein [Populus trichocarpa]	0.983	0.745	0.814	1e-103
255585210	351	Non-imprinted in Prader-Willi/Angelman s	0.974	0.655	0.773	1e-100
357520199	345	Magnesium transporter NIPA2 [Medicago tr	0.983	0.672	0.771	1e-99
449443865	353	PREDICTED: magnesium transporter NIPA2-l	0.970	0.648	0.759	4e-99
449503241	240	PREDICTED: magnesium transporter NIPA2-l	0.970	0.954	0.759	4e-98

>gi|224056096|ref|XP_002298727.1| predicted protein [Populus trichocarpa] gi|222845985|gb|EEE83532.1| predicted protein [Populus trichocarpa]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/232 (84%), Positives = 217/232 (93%)

Query: 1   MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTM 60
           M+SSNL+GFILA+VSSAFIGSSFIIKKKGLRKAG +G RA SGGYGYLLEPLWW+GM TM
Sbjct: 1   MYSSNLLGFILAMVSSAFIGSSFIIKKKGLRKAGVSGPRASSGGYGYLLEPLWWIGMITM 60

Query: 61  IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
           IVGEI+NFVAYIYAPAVLVTPLGALSIIVSAVLAHF+L EKLQKMG+LGCLLC+VGST+I
Sbjct: 61  IVGEISNFVAYIYAPAVLVTPLGALSIIVSAVLAHFLLKEKLQKMGVLGCLLCIVGSTVI 120

Query: 121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
           VLHAP E S+NSV+EIW LA QPAFLLY  SVVA+ALVLILY +PRYGQTNIL+YIGICS
Sbjct: 121 VLHAPEERSINSVEEIWELAIQPAFLLYTASVVAIALVLILYFSPRYGQTNILVYIGICS 180

Query: 181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNM 232
           VIGSLTVMS+KAIGIAIKLT+EG+NQAK  +TWIFAMV +TC+ITQLNYLNM
Sbjct: 181 VIGSLTVMSIKAIGIAIKLTIEGINQAKYFQTWIFAMVVITCIITQLNYLNM 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516417|ref|XP_003526891.1| PREDICTED: magnesium transporter NIPA2-like [Glycine max]

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/232 (80%), Positives = 212/232 (91%)

Query: 1   MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTM 60
           M+S+NLIGFILAVVSSAFIGSSFIIKKKGL++A  NG+RA  GGYGYLL+PLWW+GM TM
Sbjct: 1   MYSTNLIGFILAVVSSAFIGSSFIIKKKGLQRASLNGSRASGGGYGYLLQPLWWLGMVTM 60

Query: 61  IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
           IVGEIANFVAY+YAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLC+VGST+I
Sbjct: 61  IVGEIANFVAYVYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCIVGSTVI 120

Query: 121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
           VLHAP E+ L+SV+EIW LA QPAFLLY  S +AVA  LILYCAPR+GQTNIL+YIGICS
Sbjct: 121 VLHAPQEKPLSSVEEIWQLALQPAFLLYTASTIAVAFFLILYCAPRFGQTNILVYIGICS 180

Query: 181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNM 232
           +IGSLTVMS+KAIGIAI+LT+EG +Q    +TWIF MVA++C+ITQLNYLNM
Sbjct: 181 IIGSLTVMSIKAIGIAIRLTIEGADQFVQFQTWIFTMVAISCIITQLNYLNM 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508914|ref|XP_003523198.1| PREDICTED: magnesium transporter NIPA2-like [Glycine max]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/232 (79%), Positives = 210/232 (90%)

Query: 1   MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTM 60
           M+SSN IGFILAVVSSAFIGSSFIIKKKGL++A  NG+RA  GGYGYLL+PLWW+GM TM
Sbjct: 1   MYSSNFIGFILAVVSSAFIGSSFIIKKKGLQRASLNGSRASGGGYGYLLQPLWWLGMVTM 60

Query: 61  IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
           IVGEIANFVAY+YAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLC+VGST+I
Sbjct: 61  IVGEIANFVAYVYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCIVGSTVI 120

Query: 121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
           VLHAP E+SL+SV+EIW LA QPAFL Y  S +AV   LILYCAPR+GQTNIL+YIGICS
Sbjct: 121 VLHAPQEKSLSSVEEIWQLALQPAFLSYTASAIAVVFFLILYCAPRHGQTNILVYIGICS 180

Query: 181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNM 232
           +IGSLTVMS+KAIGIAI+LT+EG +Q    +TWIF MVA++C++TQLNYLNM
Sbjct: 181 IIGSLTVMSIKAIGIAIRLTIEGADQFVQFQTWIFTMVAISCIVTQLNYLNM 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460464|ref|XP_002272602.1| PREDICTED: magnesium transporter NIPA2 [Vitis vinifera] gi|296088673|emb|CBI38123.3| unnamed protein product [Vitis vinifera]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/230 (80%), Positives = 208/230 (90%)

Query: 2   FSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMI 61
           FS NL GFILAVVSSAFIGSSFIIKKKGL++A A+G  A SGGYGYLLEPLWW+GM TMI
Sbjct: 5   FSDNLTGFILAVVSSAFIGSSFIIKKKGLQRAAASGPPASSGGYGYLLEPLWWIGMVTMI 64

Query: 62  VGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121
           VGEIANFVAYI+APAVLVTPLGALSIIVSAVLAHF+L EKL+KMG+ GC+LC+VGST+IV
Sbjct: 65  VGEIANFVAYIFAPAVLVTPLGALSIIVSAVLAHFLLKEKLRKMGIYGCVLCIVGSTLIV 124

Query: 122 LHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSV 181
           LHAP E SL+SV+EIW LATQPAFLLY  S +AV LVL+LYC PRYGQTNI++YIGICS+
Sbjct: 125 LHAPSEHSLSSVEEIWELATQPAFLLYTASAIAVVLVLVLYCEPRYGQTNIMVYIGICSI 184

Query: 182 IGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
           IGSLTVMS+KAIGIAIKLTLEG +Q    +TW+FAMVA+TC+ITQLNYLN
Sbjct: 185 IGSLTVMSIKAIGIAIKLTLEGSSQVAHFQTWVFAMVAITCIITQLNYLN 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512886|ref|XP_003525145.1| PREDICTED: magnesium transporter NIPA2-like [Glycine max]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/232 (80%), Positives = 207/232 (89%)

Query: 1   MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTM 60
           M SSNL GF+LAV+SSAFIGSSFIIKKKGL+ A ANG RA  GGYGYLL+PLWWVGM TM
Sbjct: 1   MSSSNLTGFVLAVLSSAFIGSSFIIKKKGLQLASANGPRASVGGYGYLLQPLWWVGMITM 60

Query: 61  IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
           IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHF+L EKLQKMGMLGCLLC+VGST+I
Sbjct: 61  IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFLLKEKLQKMGMLGCLLCIVGSTVI 120

Query: 121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
           VLHAP E+SL+SVQEIW LA QPAFL Y  S +AV L L+LYCAPR+GQTNIL+Y GICS
Sbjct: 121 VLHAPEEKSLSSVQEIWELAIQPAFLSYTASAIAVTLFLVLYCAPRHGQTNILVYTGICS 180

Query: 181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNM 232
           ++GSLTVMSVKA+GIAIKLTLEG NQA   + W+FAMV++TC+I QLNYLNM
Sbjct: 181 IVGSLTVMSVKAVGIAIKLTLEGANQAFHFQAWVFAMVSVTCIIVQLNYLNM 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126885|ref|XP_002329497.1| predicted protein [Populus trichocarpa] gi|222870177|gb|EEF07308.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/232 (81%), Positives = 210/232 (90%)

Query: 1   MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTM 60
           M+SSNL GFILA+VSS FIG+SFIIKKKGLRKAG +G RA  GGYGYLLEPLWW+GM +M
Sbjct: 1   MYSSNLTGFILALVSSTFIGTSFIIKKKGLRKAGVSGPRASVGGYGYLLEPLWWIGMISM 60

Query: 61  IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
           IVGEIANFVAY+YAPAVLVTPLGALSIIVSAVLAHF+L EKLQKMG+LGCLLC+VGST+I
Sbjct: 61  IVGEIANFVAYVYAPAVLVTPLGALSIIVSAVLAHFLLGEKLQKMGVLGCLLCIVGSTVI 120

Query: 121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
           VLHAP E S+NSV+EIW LA QPAFL Y  +  A+ALVLI Y +PRYGQTNIL+YIGICS
Sbjct: 121 VLHAPEERSINSVKEIWELAIQPAFLSYTAAAAAIALVLIWYFSPRYGQTNILVYIGICS 180

Query: 181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNM 232
           VIGSLTVMS+KAIGIAIKLTLEG NQAK  +TWIFAMVA+TC+ITQLNYLNM
Sbjct: 181 VIGSLTVMSIKAIGIAIKLTLEGTNQAKYFQTWIFAMVAITCIITQLNYLNM 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585210|ref|XP_002533307.1| Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis] gi|223526851|gb|EEF29064.1| Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/230 (77%), Positives = 205/230 (89%)

Query: 2   FSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMI 61
           F+SNL GFILAV+S  FIGSSFIIKK GL++AGA+G RA SGGYGYLLEPLWWVGM TMI
Sbjct: 10  FNSNLKGFILAVLSGIFIGSSFIIKKIGLQRAGASGTRASSGGYGYLLEPLWWVGMVTMI 69

Query: 62  VGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121
           VGE ANFVAYI+APAVLVTPLGA+SIIVSAVLAHF L EK++K+GM+GCLLCVVGST+IV
Sbjct: 70  VGEFANFVAYIFAPAVLVTPLGAISIIVSAVLAHFFLKEKMKKLGMVGCLLCVVGSTLIV 129

Query: 122 LHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSV 181
           LHAP E SL SV EIW LATQPAFLLYV S +A+ LVL+LYC PRY QTN+++YIGICSV
Sbjct: 130 LHAPGEHSLTSVDEIWELATQPAFLLYVASAIAIVLVLVLYCEPRYAQTNMMVYIGICSV 189

Query: 182 IGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
           IGSLTVMS+KAIGIAIKLT+EG +QA   +TW+FAMV+++C+I QLNYLN
Sbjct: 190 IGSLTVMSIKAIGIAIKLTIEGSSQAAHFQTWVFAMVSISCIIIQLNYLN 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520199|ref|XP_003630388.1| Magnesium transporter NIPA2 [Medicago truncatula] gi|355524410|gb|AET04864.1| Magnesium transporter NIPA2 [Medicago truncatula]

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 179/232 (77%), Positives = 205/232 (88%)

Query: 1   MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTM 60
           M S+NL GF+LA++SSAFIGSSFIIKKKGL+ A  NG  A  GGYGYLL+PLWWVGM TM
Sbjct: 1   MSSTNLTGFLLALISSAFIGSSFIIKKKGLQLARVNGPSASVGGYGYLLQPLWWVGMVTM 60

Query: 61  IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
           IVGEIANFVAY+YAPAVLVTPLGALSIIVSAVLAHF+L EKLQKMGMLGCL+C++GST+I
Sbjct: 61  IVGEIANFVAYMYAPAVLVTPLGALSIIVSAVLAHFLLKEKLQKMGMLGCLICILGSTII 120

Query: 121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
           VLHAP E SL+SVQ+IW LA QPAFL+Y  S +A+ L L+LYCAPRYGQ+NIL+YIGICS
Sbjct: 121 VLHAPQEMSLSSVQQIWKLAIQPAFLMYTTSAIAITLFLVLYCAPRYGQSNILVYIGICS 180

Query: 181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNM 232
           ++GSLTVMSVKAIGIAIKLTLEG NQ    +TW+F MVA+TC+I QLNYLNM
Sbjct: 181 IVGSLTVMSVKAIGIAIKLTLEGANQIFYFQTWVFTMVAITCIIIQLNYLNM 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443865|ref|XP_004139696.1| PREDICTED: magnesium transporter NIPA2-like [Cucumis sativus]

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 174/229 (75%), Positives = 202/229 (88%)

Query: 3   SSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIV 62
           + NL GF+LA++SSAFIGSSFIIKK GLR+AGA+G+RA SGGYGYLLEPLWW+GM TMIV
Sbjct: 11  NDNLKGFLLAMLSSAFIGSSFIIKKLGLRRAGASGSRASSGGYGYLLEPLWWIGMITMIV 70

Query: 63  GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122
           GE +NFVAYIYAPA+LVTPLGA+SIIVSAVLAHF L EKLQKMG+LGC+LCVVGSTMIVL
Sbjct: 71  GEFSNFVAYIYAPAILVTPLGAISIIVSAVLAHFFLKEKLQKMGVLGCILCVVGSTMIVL 130

Query: 123 HAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVI 182
           HAP E + +SV EIW LA QP FLLY  SV+A+ L L+LYC PRYGQTNILIY+GICS+I
Sbjct: 131 HAPGERTPSSVDEIWELAIQPTFLLYTASVIAIVLFLVLYCEPRYGQTNILIYVGICSII 190

Query: 183 GSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
           GSLTVMS+KAIGIAIKLT+EG +Q    +TW+F MVA++C+I QLNYLN
Sbjct: 191 GSLTVMSIKAIGIAIKLTMEGWSQVAHFQTWVFLMVAISCIIIQLNYLN 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503241|ref|XP_004161904.1| PREDICTED: magnesium transporter NIPA2-like, partial [Cucumis sativus]

 Score =  363 bits (931), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 174/229 (75%), Positives = 202/229 (88%)

Query: 3   SSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIV 62
           + NL GF+LA++SSAFIGSSFIIKK GLR+AGA+G+RA SGGYGYLLEPLWW+GM TMIV
Sbjct: 11  NDNLKGFLLAMLSSAFIGSSFIIKKLGLRRAGASGSRASSGGYGYLLEPLWWIGMITMIV 70

Query: 63  GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122
           GE +NFVAYIYAPA+LVTPLGA+SIIVSAVLAHF L EKLQKMG+LGC+LCVVGSTMIVL
Sbjct: 71  GEFSNFVAYIYAPAILVTPLGAISIIVSAVLAHFFLKEKLQKMGVLGCILCVVGSTMIVL 130

Query: 123 HAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVI 182
           HAP E + +SV EIW LA QP FLLY  SV+A+ L L+LYC PRYGQTNILIY+GICS+I
Sbjct: 131 HAPGERTPSSVDEIWELAIQPTFLLYTASVIAIVLFLVLYCEPRYGQTNILIYVGICSII 190

Query: 183 GSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
           GSLTVMS+KAIGIAIKLT+EG +Q    +TW+F MVA++C+I QLNYLN
Sbjct: 191 GSLTVMSIKAIGIAIKLTMEGWSQVAHFQTWVFLMVAISCIIIQLNYLN 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2141742	326	AT4G38730 "AT4G38730" [Arabido	0.978	0.708	0.632	1.5e-74
TAIR|locus:2047112	328	AT2G21120 [Arabidopsis thalian	0.978	0.704	0.636	6.5e-74
TAIR|locus:2009343	368	AT1G34470 "AT1G34470" [Arabido	0.978	0.627	0.575	4.8e-71
TAIR|locus:2016084	343	AT1G71900 "AT1G71900" [Arabido	0.978	0.673	0.575	1.8e-69
TAIR|locus:2136912	386	AT4G09640 "AT4G09640" [Arabido	0.978	0.598	0.571	1.7e-68
TAIR|locus:2076186	335	AT3G23870 "AT3G23870" [Arabido	0.978	0.689	0.584	4.4e-68
TAIR|locus:2119540	336	AT4G13800 [Arabidopsis thalian	0.978	0.687	0.584	1.5e-67
CGD|CAL0004327	368	orf19.5352 [Candida albicans (	0.953	0.611	0.473	1.1e-53
UNIPROTKB|Q5A5P7	368	CaO19.12812 "Putative uncharac	0.953	0.611	0.473	1.1e-53
UNIPROTKB|F1NBX2	361	NIPA2 "Uncharacterized protein	0.953	0.623	0.477	1.7e-50

TAIR|locus:2141742 AT4G38730 "AT4G38730" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 146/231 (63%), Positives = 174/231 (75%)

Query:     1 MFSSNLIGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXLEPLWWVGMFTM 60
             M S N +G +LAV SS FIGSSFI+                       LEPLWWVG+ TM
Sbjct:     1 MVSDNEMGLVLAVSSSVFIGSSFILKKKGLKRAAANGTRAGFGGYTYLLEPLWWVGLVTM 60

Query:    61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
               GEIANFVAY+YAPAVLVTPLGALSII+SAVLAHF+L+EKL+KMG+ GC+ C+VGS MI
Sbjct:    61 TFGEIANFVAYVYAPAVLVTPLGALSIIISAVLAHFLLDEKLRKMGVWGCVCCIVGSVMI 120

Query:   121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
             V+HAP E++ NSV+EIW LA QPAFL+YV   +++ L LILYC P  GQTNIL+YIGICS
Sbjct:   121 VIHAPQEQTPNSVEEIWKLAMQPAFLIYVAISMSIVLALILYCEPLCGQTNILVYIGICS 180

Query:   181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
             ++GSLTVMS+KA+GIAIKLT EG+NQ    ETW FAMVA  CV+ Q+ YLN
Sbjct:   181 LMGSLTVMSIKAVGIAIKLTFEGINQIWYPETWFFAMVAAICVVMQMIYLN 231

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2047112 AT2G21120 [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 147/231 (63%), Positives = 177/231 (76%)

Query:     1 MFSSNLIGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXLEPLWWVGMFTM 60
             M + N  G ILAV SS FIGSSFI+                       LEPLWW GM TM
Sbjct:     1 METDNGKGLILAVASSVFIGSSFILKKKGLKRAGAIGTRAGYGGYTYLLEPLWWAGMVTM 60

Query:    61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
             IVGE ANFVAYIYAPAVLVTPLGALSII+SAVLAHF+L EKL+KMG+LGC+ C+VGS +I
Sbjct:    61 IVGEAANFVAYIYAPAVLVTPLGALSIIISAVLAHFLLKEKLKKMGVLGCVSCIVGSVVI 120

Query:   121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
             V+HAP E++ NSV+EIW LATQPAFL+YV   +++ L LIL+  P  GQTNIL+YIGICS
Sbjct:   121 VIHAPKEQTPNSVEEIWNLATQPAFLIYVAITMSIVLALILHFEPLCGQTNILVYIGICS 180

Query:   181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
             ++G+LTVMS+KAIGIAIKLT+EG++Q    +TW+F MVA+TCV+TQL YLN
Sbjct:   181 LMGALTVMSIKAIGIAIKLTMEGVSQIGYPQTWLFVMVAVTCVVTQLIYLN 231

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2009343 AT1G34470 "AT1G34470" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 133/231 (57%), Positives = 173/231 (74%)

Query:     1 MFSSNLIGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXLEPLWWVGMFTM 60
             M S N+ G +LA+ SS FIG+SFI+                       LEPLWWVGM TM
Sbjct:    15 MSSDNIKGLVLALSSSLFIGASFIVKKKGLKRAGASGLRAGSGGYSYLLEPLWWVGMITM 74

Query:    61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
             IVGEIANF AY +APA+LVTPLGALSII+SA LAH +L+EKL   G+LGC+LCVVGS  I
Sbjct:    75 IVGEIANFAAYAFAPAILVTPLGALSIIISAALAHVILHEKLHTFGLLGCVLCVVGSITI 134

Query:   121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
             VLHAP E+ ++SV ++W LAT+PAFLLY  +VV  A++LI+   P+YGQ+++++YIG+CS
Sbjct:   135 VLHAPQEQEIDSVLQVWNLATEPAFLLYAAAVVGAAIILIVQFVPQYGQSHVMVYIGVCS 194

Query:   181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
             ++GSL+VMSVKA+GIA+KLT  G+NQ    +TW+F ++ LTCVITQ+NYLN
Sbjct:   195 LVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWVFTLIVLTCVITQMNYLN 245

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016084 AT1G71900 "AT1G71900" [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 133/231 (57%), Positives = 167/231 (72%)

Query:     1 MFSSNLIGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXLEPLWWVGMFTM 60
             M S N+ G +LA+ SS FIG+SFI+                        EPLWW+GM TM
Sbjct:    15 MSSDNIKGLVLALSSSLFIGASFIVKKKGLKKAASTGTRAGVGGYSYLYEPLWWIGMTTM 74

Query:    61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
             ++GEIANF AY +APA+LVTPLGA+SII+SAVLAH +L EKL   G+LGC LCVVGST I
Sbjct:    75 LLGEIANFAAYAFAPAILVTPLGAVSIIISAVLAHIILREKLHIFGILGCALCVVGSTTI 134

Query:   121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
             VLHAP E  ++SV E+W LAT+PAF+ Y   V+  A+ LI+   P+YGQTN+++YIGICS
Sbjct:   135 VLHAPQEREIDSVIEVWNLATEPAFMFYASLVIGAAVFLIIRFVPQYGQTNVMVYIGICS 194

Query:   181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
             ++GSL+VMSVKA+GIA+KLT  G NQ    +TWIF +V LTCV+TQLNYLN
Sbjct:   195 LVGSLSVMSVKALGIALKLTFSGTNQLFYPQTWIFTLVVLTCVVTQLNYLN 245

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2136912 AT4G09640 "AT4G09640" [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 132/231 (57%), Positives = 166/231 (71%)

Query:     1 MFSSNLIGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXLEPLWWVGMFTM 60
             M S N+ G +LA+ SS FIG+SFI+                       LEPLWW+GM TM
Sbjct:    15 MSSDNVKGLVLALSSSIFIGASFIVKKKGLKKAGASGLRAGSGGYSYLLEPLWWIGMITM 74

Query:    61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
             IVGEIANF AY +APA+LVTPLGALSII+SA LAH +L EKL   G+LGC LC+VGS  I
Sbjct:    75 IVGEIANFAAYAFAPAILVTPLGALSIIISASLAHIILQEKLHTFGILGCALCIVGSVTI 134

Query:   121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
             VLHAP E+ + SV E+W LAT+PAFL Y  +VV  A+VLI+   P YGQ+++++YIG+CS
Sbjct:   135 VLHAPQEQDIVSVLEVWNLATEPAFLFYAAAVVGAAIVLIVQFIPLYGQSHVMVYIGVCS 194

Query:   181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
             +IGSL+VMSVKA+GIA+KLT  G NQ    +TW+F ++ L CVITQ+NYLN
Sbjct:   195 LIGSLSVMSVKALGIALKLTFSGTNQLGYPQTWVFTVIVLFCVITQMNYLN 245

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076186 AT3G23870 "AT3G23870" [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 135/231 (58%), Positives = 161/231 (69%)

Query:     1 MFSSNLIGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXLEPLWWVGMFTM 60
             M   N+ G ILAV SS FIGSSFII                        EP WW GM TM
Sbjct:     4 MSPDNINGVILAVSSSIFIGSSFIIKKKGLKKAGASGVRAGEGGYGYLKEPWWWAGMITM 63

Query:    61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
             IVGE+ANF AY +APA+LVTPLGALSII SAVLAHF+L EKL   G+LGC+LCVVGST I
Sbjct:    64 IVGEVANFAAYAFAPAILVTPLGALSIIFSAVLAHFILKEKLHMFGILGCILCVVGSTTI 123

Query:   121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
             VLHAP E+ + SV++IW LA +P FL+Y   +V V  +LI Y  PRYG+T++++Y+GICS
Sbjct:   124 VLHAPHEQKIESVKQIWQLAIEPGFLVYSAVIVIVVAILIFYYEPRYGKTHMIVYVGICS 183

Query:   181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
             ++GSLTVMSVKA+ IAIKLT  G NQ K   TWIF +V  TC I Q+NYLN
Sbjct:   184 LMGSLTVMSVKAVAIAIKLTFSGTNQFKYFNTWIFILVVATCCILQINYLN 234

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2119540 AT4G13800 [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 135/231 (58%), Positives = 160/231 (69%)

Query:     1 MFSSNLIGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXLEPLWWVGMFTM 60
             M   N+ G ILAV SS FIGSSFII                        EP WW GM TM
Sbjct:     4 MSPDNIHGVILAVSSSIFIGSSFIIKKKGLKKAGVSGARAGEGGYGYLYEPWWWAGMITM 63

Query:    61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
             IVGEIANF AY +APA+LVTPLGALSII SAVLAHF+L EKL   G+LGC+LCVVGST I
Sbjct:    64 IVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILEEKLHMFGILGCVLCVVGSTTI 123

Query:   121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
             VLHAP E+ + SV+++W LAT+P FL Y   V+ V L LI Y  PRYG+T++++Y+GICS
Sbjct:   124 VLHAPHEQGIESVKQVWHLATEPGFLAYSAVVLVVVLALIFYYEPRYGKTHMIVYVGICS 183

Query:   181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
             ++GSLTVMSVKA+ IAIKLT  G+NQ K    WIF +V   C I Q+NYLN
Sbjct:   184 LMGSLTVMSVKAVAIAIKLTFSGMNQFKYFHAWIFIIVVTICCILQINYLN 234

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

CGD|CAL0004327 orf19.5352 [Candida albicans (taxid:5476)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 107/226 (47%), Positives = 146/226 (64%)

Query:     7 IGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXLE-PLWWVGMFTMIVGEI 65
             IG  LA+ SS  IG+SFII                       L+ P+WW GM TM +GEI
Sbjct:     6 IGLALAMSSSLAIGTSFIITKKGLMDASARTGGTDGVQASDYLQNPIWWGGMITMAIGEI 65

Query:    66 ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125
             ANF AY +APA+LVTPLGALS+I+ AVLA   L E+L  +G +GC +C++GS +I+LHAP
Sbjct:    66 ANFAAYTFAPAILVTPLGALSVIIGAVLAAIFLKERLGTLGKMGCAICLMGSVIIILHAP 125

Query:   126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185
              ++ + +V EI   ATQP F+ Y   V   +L +I    P+YG TN +IY+ ICS +GS+
Sbjct:   126 PDKEVQTVDEILGYATQPGFMFYCTVVTLYSLFMIYKIVPKYGNTNPMIYLSICSSVGSI 185

Query:   186 TVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
             +VMS+KA GIA+KLTL G NQ   + T++F +V   C++TQ+NY N
Sbjct:   186 SVMSIKAFGIALKLTLGGNNQFTHVSTYLFLIVVALCIVTQMNYFN 231

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A5P7 CaO19.12812 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 107/226 (47%), Positives = 146/226 (64%)

Query:     7 IGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXLE-PLWWVGMFTMIVGEI 65
             IG  LA+ SS  IG+SFII                       L+ P+WW GM TM +GEI
Sbjct:     6 IGLALAMSSSLAIGTSFIITKKGLMDASARTGGTDGVQASDYLQNPIWWGGMITMAIGEI 65

Query:    66 ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125
             ANF AY +APA+LVTPLGALS+I+ AVLA   L E+L  +G +GC +C++GS +I+LHAP
Sbjct:    66 ANFAAYTFAPAILVTPLGALSVIIGAVLAAIFLKERLGTLGKMGCAICLMGSVIIILHAP 125

Query:   126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185
              ++ + +V EI   ATQP F+ Y   V   +L +I    P+YG TN +IY+ ICS +GS+
Sbjct:   126 PDKEVQTVDEILGYATQPGFMFYCTVVTLYSLFMIYKIVPKYGNTNPMIYLSICSSVGSI 185

Query:   186 TVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
             +VMS+KA GIA+KLTL G NQ   + T++F +V   C++TQ+NY N
Sbjct:   186 SVMSIKAFGIALKLTLGGNNQFTHVSTYLFLIVVALCIVTQMNYFN 231

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NBX2 NIPA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 108/226 (47%), Positives = 144/226 (63%)

Query:     7 IGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXL-EPLWWVGMFTMIVGEI 65
             IG +LA+ SS FIG SFI+                       L E LWW G+ +M  GE+
Sbjct:    12 IGLVLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEV 71

Query:    66 ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125
             ANF AY +APA LVTPLGALS++VSA+L+ F LNEKL   G +GCLL ++GST++V+HAP
Sbjct:    72 ANFAAYAFAPATLVTPLGALSVLVSAILSSFFLNEKLNLHGKIGCLLSILGSTVMVIHAP 131

Query:   126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185
              EE + ++ E+      P F+++   VV V+L+LI+   PR+GQTNIL+YI ICSVIG+L
Sbjct:   132 QEEEVETLDEMSNKLRDPGFVVFATLVVIVSLILIVVVGPRHGQTNILVYITICSVIGAL 191

Query:   186 TVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
             +V  VK +GIAIK    G    K   +WI  +  + CV TQ+NYLN
Sbjct:   192 SVSCVKGLGIAIKELFAGKPVLKRPLSWILLLSLIVCVSTQINYLN 237

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SWX0	NIPA2_BOVIN	No assigned EC number	0.5176	0.9533	0.625	yes	no
Q5R7Q3	NIPA2_PONAB	No assigned EC number	0.5176	0.9533	0.625	yes	no
Q8N8Q9	NIPA2_HUMAN	No assigned EC number	0.5176	0.9533	0.625	yes	no
Q9JJC8	NIPA2_MOUSE	No assigned EC number	0.5176	0.9533	0.6267	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
pfam05653	300	pfam05653, Mg_trans_NIPA, Magnesium transporter NI	1e-105

>gnl|CDD|114381 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA

 Score =  307 bits (787), Expect = e-105
 Identities = 153/231 (66%), Positives = 180/231 (77%)

Query: 1   MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTM 60
           M + N IG ILAV SS FIGSSFIIKKKGL +    G RAG GGYGYL E LWW G+ TM
Sbjct: 1   MNTDNYIGLILAVSSSIFIGSSFIIKKKGLLRLARGGMRAGEGGYGYLKEWLWWAGLLTM 60

Query: 61  IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120
           IVGE ANF AY +APA LVTPLGALS+I+SAVL+ F LNEKL   G LGC+LC+VGST+I
Sbjct: 61  IVGEAANFAAYAFAPATLVTPLGALSVIISAVLSSFFLNEKLNLFGKLGCVLCIVGSTVI 120

Query: 121 VLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICS 180
           V+HAP E+ + SV+E+W LAT P FL+YV  VV V L+LI +  PR+GQTNIL+YI ICS
Sbjct: 121 VIHAPKEQEIESVREVWNLATDPGFLVYVILVVGVVLILIFFVEPRHGQTNILVYITICS 180

Query: 181 VIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN 231
           +IGSLTVMSVKA+GIAIKLT  G NQ    + WIF +V +TCV+TQ+NYLN
Sbjct: 181 LIGSLTVMSVKALGIAIKLTFSGKNQLGYPQFWIFLVVVVTCVVTQINYLN 231

NIPA (nonimprinted in Prader-Willi/Angelman syndrome) is a family of integral membrane proteins which function as magnesium transporters. Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
KOG2922	335	consensus Uncharacterized conserved protein [Funct	100.0
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	100.0
COG2510	140	Predicted membrane protein [Function unknown]	98.97
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.97
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.72
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	98.71
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.61
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.56
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.3
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.05
PLN00411	358	nodulin MtN21 family protein; Provisional	98.04
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.01
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.97
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.96
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.96
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.91
PRK11272	292	putative DMT superfamily transporter inner membran	97.88
PRK15430	296	putative chloramphenical resistance permease RarD;	97.87
PRK11689	295	aromatic amino acid exporter; Provisional	97.85
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.83
PRK11689	295	aromatic amino acid exporter; Provisional	97.81
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.74
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.73
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.7
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.57
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.52
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.42
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.42
PRK11272	292	putative DMT superfamily transporter inner membran	97.41
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.2
PRK15430	296	putative chloramphenical resistance permease RarD;	97.19
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.19
PRK11431	105	multidrug efflux system protein; Provisional	97.17
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.16
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.08
COG2076	106	EmrE Membrane transporters of cations and cationic	96.87
PLN00411	358	nodulin MtN21 family protein; Provisional	96.84
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	96.79
PRK10532	293	threonine and homoserine efflux system; Provisiona	96.7
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.4
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.11
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	96.08
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.08
KOG3912	372	consensus Predicted integral membrane protein [Gen	96.05
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	95.93
KOG2765	416	consensus Predicted membrane protein [Function unk	95.92
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	95.79
PRK13499	345	rhamnose-proton symporter; Provisional	95.77
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	95.72
COG2962	293	RarD Predicted permeases [General function predict	94.36
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.19
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	93.61
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	92.87
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	91.35
KOG4831	125	consensus Unnamed protein [Function unknown]	89.36
COG1742	109	Uncharacterized conserved protein [Function unknow	88.54
PRK02237	109	hypothetical protein; Provisional	88.02
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	86.79
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	85.89
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	83.08
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	81.51
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	80.61

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.1e-57  Score=404.19  Aligned_cols=236  Identities=67%  Similarity=1.129  Sum_probs=230.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhh
Q 026598            1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVT   80 (236)
Q Consensus         1 ~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~   80 (236)
                      |++++++|+.+|+.||++++.++++|||+++|..+.+.|++++..+|++.|.||+|++.|++|+++||.||+|||+++|+
T Consensus        15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVt   94 (335)
T KOG2922|consen   15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVT   94 (335)
T ss_pred             hccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhc
Confidence            78999999999999999999999999999999888778888888999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccCcCCHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 026598           81 PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI  160 (236)
Q Consensus        81 Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~~~~~~~l~~~~~~~~f~~y~~~~~~~~~~l~  160 (236)
                      |||++|+++|+++|++++||+++..+.+||++|+.|.+++|.++|+|++..|++|+++++++|+|++|+.+.+++.++++
T Consensus        95 PLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il~  174 (335)
T KOG2922|consen   95 PLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIVLILI  174 (335)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhccccCCcchhhhhHhHhhhhhHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHhhhhCC
Q 026598          161 LYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMVSVL  236 (236)
Q Consensus       161 ~~~~~r~~~~~~l~~~~~~g~lg~~tvl~aK~~~~~l~~~~~g~~~~~~~~~y~~~~~~~~~~~~Q~~~LN~al~l  236 (236)
                      ++..||+|++|+++|+.+|+.+|++||+++|+++.+++++++|++|+.+|++|+++++++.|+..|++||||||++
T Consensus       175 ~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~  250 (335)
T KOG2922|consen  175 FFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDL  250 (335)
T ss_pred             eeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999974

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=100.00  E-value=2.1e-55  Score=394.84  Aligned_cols=236  Identities=48%  Similarity=0.805  Sum_probs=224.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhh
Q 026598            1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVT   80 (236)
Q Consensus         1 ~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~   80 (236)
                      |=+++++|+.+|++||++++.|+++|||+++|+++++.|++++.++|+|||+||.|+.++++|+++|++||+|+|+++||
T Consensus         1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~   80 (300)
T PF05653_consen    1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVA   80 (300)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHH
Confidence            55789999999999999999999999999999887655655566789999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccCcCCHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 026598           81 PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI  160 (236)
Q Consensus        81 Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~~~~~~~l~~~~~~~~f~~y~~~~~~~~~~l~  160 (236)
                      |++++++++|++++++++|||++++|+.|+.+++.|+++++.++|++++.+|.||+.+++++|+|+.|+.+..+..+.++
T Consensus        81 Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~  160 (300)
T PF05653_consen   81 PLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILI  160 (300)
T ss_pred             HHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988877777


Q ss_pred             hhhccccCCcchhhhhHhHhhhhhHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHhhhhCC
Q 026598          161 LYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMVSVL  236 (236)
Q Consensus       161 ~~~~~r~~~~~~l~~~~~~g~lg~~tvl~aK~~~~~l~~~~~g~~~~~~~~~y~~~~~~~~~~~~Q~~~LN~al~l  236 (236)
                      ++..||+|++++++|.++|+++|++|++++|++++.++++++|++||.||.+|+++++++.|++.|++||||||+.
T Consensus       161 ~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~  236 (300)
T PF05653_consen  161 FFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKR  236 (300)
T ss_pred             HhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7788899999999999999999999999999999999999999999999999999999999999999999999973

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.97  E-value=5e-09  Score=82.82  Aligned_cols=111  Identities=26%  Similarity=0.383  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCC---CCC--------------CC-CCcccccchhHH----HHHHHHHHHHHHH
Q 026598           10 ILAVVSSAFIGSSFIIKKKGLRKAGANG---ARA--------------GS-GGYGYLLEPLWW----VGMFTMIVGEIAN   67 (236)
Q Consensus        10 ~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~~--------------~~-~~~~~~~~~~W~----~G~~~~~~g~~~~   67 (236)
                      ..|+.||++.++..++-|-+.+..+.+-   -|.              |+ +...-...+.|.    .| +.-+++..+.
T Consensus         6 ~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSG-la~glswl~Y   84 (140)
T COG2510           6 IYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSG-LAGGLSWLLY   84 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHH-HHHHHHHHHH
Confidence            5678888888899888888876543210   010              00 001112223343    24 4457889999


Q ss_pred             HHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598           68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        68 ~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      |.|+.-+++|.|.|+...|+++..+++..++|||++..+|+|+.+|++|++++.
T Consensus        85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999999999999999999999999998764

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.97  E-value=3.7e-09  Score=84.32  Aligned_cols=114  Identities=17%  Similarity=0.146  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCC-CCcccccch--hHHHHHHHHHHHHHHHHHHHhhcCchhhhchhh
Q 026598            8 GFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGS-GGYGYLLEP--LWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGA   84 (236)
Q Consensus         8 gv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~-~~~~~~~~~--~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~   84 (236)
                      |..+.+.+.++.+.|..+-|++.++.++.+..... .......+|  .-+.|+..++++...+..++...|++...|+-+
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~s   82 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLS   82 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            56777888889999999999998887643211100 001124456  556799999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH--HhccccccchhhHHHHHhhhhheee
Q 026598           85 LSIIVSAVLAHF--MLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        85 ~~lv~~~~~a~~--~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      ...++..+.+..  ++||++|.+++.|++++++|+.++.
T Consensus        83 l~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         83 LSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            998888888885  7999999999999999999998864

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.72  E-value=1.5e-07  Score=73.12  Aligned_cols=99  Identities=13%  Similarity=0.198  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHH--HHHHHHHHHHHHHHhhcCchhhhchhhHHHHHH
Q 026598           13 VVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGM--FTMIVGEIANFVAYIYAPAVLVTPLGALSIIVS   90 (236)
Q Consensus        13 l~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~--~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~   90 (236)
                      +.+.++-..|....|++.+..+..        + ...++..+.+.  ..+.++..+...++...|.+...|+.+++.+++
T Consensus         7 ~~ai~~ev~g~~~lK~s~~~~~~~--------~-~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~   77 (111)
T PRK15051          7 VFASLLSVAGQLCQKQATRPVAIG--------K-RRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWV   77 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCcc--------h-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence            445666677888888874333211        0 11123444544  557888999999999999999999999999999


Q ss_pred             HHHHHHHhccccccchhhHHHHHhhhhhee
Q 026598           91 AVLAHFMLNEKLQKMGMLGCLLCVVGSTMI  120 (236)
Q Consensus        91 ~~~a~~~l~e~~~~~~~~g~~li~~G~~~~  120 (236)
                      .+.+.+++|||++.+++.|..+++.|++++
T Consensus        78 ~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i  107 (111)
T PRK15051         78 TLAAVKLWHEPVSPRHWCGVAFIIGGIVIL  107 (111)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998765

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=98.71  E-value=2.4e-08  Score=77.73  Aligned_cols=105  Identities=18%  Similarity=0.212  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCC--CCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhchh-hHHHHHHHH
Q 026598           16 SAFIGSSFIIKKKGLRKAGANGAR--AGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAV   92 (236)
Q Consensus        16 a~~~a~g~vlqk~~~~~~~~~~~~--~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~   92 (236)
                      +++.+...-+.||+.+..++...+  .-++....+++|..++++++.-.|++..+..++-+|.|+..|+. +++.+++++
T Consensus         5 g~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l   84 (113)
T PF10639_consen    5 GILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL   84 (113)
T ss_pred             hHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence            455666777888876655433211  11133458899999999999999999999999999999999996 999999999


Q ss_pred             HHHHHhccccccchhhHHHHHhhhhhee
Q 026598           93 LAHFMLNEKLQKMGMLGCLLCVVGSTMI  120 (236)
Q Consensus        93 ~a~~~l~e~~~~~~~~g~~li~~G~~~~  120 (236)
                      .++++-+|..+++.+.|+.+++.|+.+.
T Consensus        85 ~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   85 TGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            9977766667778899999999998765

Many members are annotated as potential transmembrane proteins.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.61  E-value=2.4e-07  Score=71.52  Aligned_cols=68  Identities=31%  Similarity=0.465  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeec
Q 026598           56 GMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA  124 (236)
Q Consensus        56 G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~  124 (236)
                      |......+..+.+.|+.++| ..+.|+.+++.+++.+++..++|||+++++|.|+.++.+|++++....
T Consensus        41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            44445578899999999999 699999999999999999999999999999999999999998875543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.56  E-value=1.2e-05  Score=71.24  Aligned_cols=113  Identities=23%  Similarity=0.248  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccC-CCCC---------------CCCCcccccchhHHH---HHHHHHHHHHHHHH
Q 026598            9 FILAVVSSAFIGSSFIIKKKGLRKAGAN-GARA---------------GSGGYGYLLEPLWWV---GMFTMIVGEIANFV   69 (236)
Q Consensus         9 v~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~~~---------------~~~~~~~~~~~~W~~---G~~~~~~g~~~~~~   69 (236)
                      ..+.+.++++.|..+.+.||+.++++.- ..+.               ....++..++..|+.   +......+..+.+.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQ   82 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999765543320 0000               000011112222211   33344566778889


Q ss_pred             HHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598           70 AYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        70 al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      ++...|.+..+|+...+.+++.+++..++|||+++++|.|..++..|+.++.
T Consensus        83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~  134 (281)
T TIGR03340        83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG  134 (281)
T ss_pred             HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998765

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.30  E-value=4.4e-06  Score=74.59  Aligned_cols=124  Identities=16%  Similarity=0.100  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC---CC-C----------CCCcccccch----hHHHHHHHHHHHHHHH
Q 026598            6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGA---RA-G----------SGGYGYLLEP----LWWVGMFTMIVGEIAN   67 (236)
Q Consensus         6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~---~~-~----------~~~~~~~~~~----~W~~G~~~~~~g~~~~   67 (236)
                      ..|..+++.++++.+.+.++.||..++.+....   .. +          .+........    .++.|+...++++.++
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~  226 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLE  226 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999998875433221000   00 0          0000111112    2355667777888899


Q ss_pred             HHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccC
Q 026598           68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES  129 (236)
Q Consensus        68 ~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~  129 (236)
                      ..++...|.+.++++..+..+++.+++.+++||+++..++.|.++++.|+.......++|++
T Consensus       227 ~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~  288 (293)
T PRK10532        227 MIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK  288 (293)
T ss_pred             HHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999877655555443

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.05  E-value=8.7e-05  Score=58.49  Aligned_cols=74  Identities=15%  Similarity=0.156  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCC
Q 026598           53 WWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL  126 (236)
Q Consensus        53 W~~G~~~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~  126 (236)
                      |+..+.+++.+..+...++...|.++..|+ .+++.+...+.+.++.||+++..++.|..+++.|++.+=..+++
T Consensus        33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~  107 (120)
T PRK10452         33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRK  107 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence            455666788899999999999999999999 57999999999999999999999999999999999877554443

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.04  E-value=3.1e-05  Score=71.59  Aligned_cols=123  Identities=17%  Similarity=0.200  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC-C------------------CCCCCccccc-chhHHHHHH----HH
Q 026598            5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGA-R------------------AGSGGYGYLL-EPLWWVGMF----TM   60 (236)
Q Consensus         5 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~-~------------------~~~~~~~~~~-~~~W~~G~~----~~   60 (236)
                      ..+|..+++.|+++.+.+.++||+..++.+.... .                  .+.+...... -..+...++    ..
T Consensus       187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t  266 (358)
T PLN00411        187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH
Confidence            4679999999999999999999986555322100 0                  0000000000 011111222    12


Q ss_pred             HHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCc
Q 026598           61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE  127 (236)
Q Consensus        61 ~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~  127 (236)
                      .+++.++..+....+++.++...-+..+++++++..+++|+++..+++|.++++.|+.++.....+|
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~  333 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE  333 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3466778888999999999999999999999999999999999999999999999998875544444

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.01  E-value=0.00045  Score=59.73  Aligned_cols=68  Identities=22%  Similarity=0.277  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeee
Q 026598           55 VGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL  122 (236)
Q Consensus        55 ~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~  122 (236)
                      .|.....++..+.+.|+.+.|.+..+++.....+++.+++..++|||++++++.|+.+.+.|+.++..
T Consensus        52 ~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        52 LGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            45556678888999999999999999999999999999999999999999999999999999988753

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.97  E-value=8.5e-05  Score=64.28  Aligned_cols=114  Identities=17%  Similarity=0.178  Sum_probs=86.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC---CC--C------------CCCCcccccchhHH----HHHHHHHH
Q 026598            4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG---AR--A------------GSGGYGYLLEPLWW----VGMFTMIV   62 (236)
Q Consensus         4 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~--~------------~~~~~~~~~~~~W~----~G~~~~~~   62 (236)
                      +...|..+++.++++.+...+.+||..++.+.+.   .+  .            ..+.......+.|.    .|....+.
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL  204 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence            3457999999999999999999999654433110   00  0            00111111223332    34444567


Q ss_pred             HHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhh
Q 026598           63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGS  117 (236)
Q Consensus        63 g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~  117 (236)
                      +..+++.++...|++.++.+.....+++.+++.+++||+++..++.|+.+++.|+
T Consensus       205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            8889999999999999999999999999999999999999999999999999986

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.96  E-value=0.0019  Score=57.78  Aligned_cols=112  Identities=22%  Similarity=0.274  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCC---CCCC--C-CCcccc---cch---hHHHHHHHHHHHHHHHHHHHhh-cCc
Q 026598           10 ILAVVSSAFIGSSFIIKKKGLRKAGANG---ARAG--S-GGYGYL---LEP---LWWVGMFTMIVGEIANFVAYIY-APA   76 (236)
Q Consensus        10 ~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~~~--~-~~~~~~---~~~---~W~~G~~~~~~g~~~~~~al~~-ap~   76 (236)
                      .+++.++++.+......|....+.+...   .|..  . ......   |++   .-..|+........+.+.++.. .|.
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a   86 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA   86 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            4577888999999999988765433210   1210  0 000011   111   1112332223333455667776 477


Q ss_pred             hhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598           77 VLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        77 slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      +..+-+.....++..+++++++|||++++++.|.++...|+.++.
T Consensus        87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~  131 (299)
T PRK11453         87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI  131 (299)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence            888888889999999999999999999999999999999988765

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.96  E-value=0.00011  Score=57.07  Aligned_cols=76  Identities=14%  Similarity=0.195  Sum_probs=65.3

Q ss_pred             chhHHH-HHHHHHHHHHHHHHHHhhcCchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecC
Q 026598           50 EPLWWV-GMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP  125 (236)
Q Consensus        50 ~~~W~~-G~~~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~  125 (236)
                      +|.|.. .+..++++..+-..|+...|.++..|. .+++.+.+.+.+.++.||+++..++.|..+++.|++.+-..++
T Consensus        29 ~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~  106 (110)
T PRK09541         29 RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR  106 (110)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            455544 455678888888999999999999999 7799999999999999999999999999999999988744443

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.91  E-value=5.2e-05  Score=57.56  Aligned_cols=66  Identities=26%  Similarity=0.454  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhee
Q 026598           55 VGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI  120 (236)
Q Consensus        55 ~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~  120 (236)
                      .|......+..+...++...|.+.++++..++.+++.+++..++||+++++++.|+.+++.|+.++
T Consensus        59 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   59 LGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            455545788899999999999999999999999999999999999999999999999999998765

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.88  E-value=8.3e-05  Score=66.28  Aligned_cols=117  Identities=16%  Similarity=0.111  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC----------------CCCCCCCcccccchhHH----HHHHHHHHHH
Q 026598            5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG----------------ARAGSGGYGYLLEPLWW----VGMFTMIVGE   64 (236)
Q Consensus         5 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~----------------~~~~~~~~~~~~~~~W~----~G~~~~~~g~   64 (236)
                      ...|..+++.++++.|.+.+.+||..++.+...                .-.+.+.........|+    .|+...+++.
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~  227 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI  227 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            346999999999999999999988533211100                00000000001112233    2444456778


Q ss_pred             HHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598           65 IANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        65 ~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      .++..++...|.+.+..+..+..+++.+++..++||+++..++.|..+++.|+.+..
T Consensus       228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999997753

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.87  E-value=4.8e-05  Score=68.00  Aligned_cols=119  Identities=16%  Similarity=0.078  Sum_probs=89.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC---CCC--C----------C-CCc---ccccchhHH----HHHH
Q 026598            2 FSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG---ARA--G----------S-GGY---GYLLEPLWW----VGMF   58 (236)
Q Consensus         2 ~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~~--~----------~-~~~---~~~~~~~W~----~G~~   58 (236)
                      |++...|..+.+.++++.+.....-|.. .+.+...   .|.  +          . +.+   +..+++.++    .|..
T Consensus         3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (296)
T PRK15430          3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV   81 (296)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence            6678899999999999999998888763 2221100   110  0          0 000   011123322    4555


Q ss_pred             HHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598           59 TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        59 ~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      ....+..+.+.++...|.+...-+.....++..++++.++|||+++++|.|.++...|++++.
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            566778899999999999999999999999999999999999999999999999999998764

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.85  E-value=8.6e-05  Score=66.36  Aligned_cols=115  Identities=17%  Similarity=0.098  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC--C----------CCCcc-cccchhHH----HHHHHHHHHHHHHH
Q 026598            6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA--G----------SGGYG-YLLEPLWW----VGMFTMIVGEIANF   68 (236)
Q Consensus         6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~--~----------~~~~~-~~~~~~W~----~G~~~~~~g~~~~~   68 (236)
                      ..|..+++.++++.+.+.++.||-.++.+......  .          ++... ......|.    .| ...++++.++.
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~  233 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWN  233 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHH
Confidence            46899999999999999999998543322100000  0          00001 11111232    23 23456788899


Q ss_pred             HHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598           69 VAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        69 ~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      .++...|++.++++..+..+++.+++..++||+++..+++|.++++.|+.+..
T Consensus       234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence            99999999999999999999999999999999999999999999999987653

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.83  E-value=6.9e-05  Score=66.38  Aligned_cols=113  Identities=17%  Similarity=0.122  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCC----C-----C-----------CCCcccccchhHH----HHHHHHHH
Q 026598            7 IGFILAVVSSAFIGSSFIIKKKGLRKAGANGAR----A-----G-----------SGGYGYLLEPLWW----VGMFTMIV   62 (236)
Q Consensus         7 igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~----~-----~-----------~~~~~~~~~~~W~----~G~~~~~~   62 (236)
                      -|..+++.++++.+.+.++.|+..++.+.....    .     .           ++......++.|+    .+.....+
T Consensus       144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l  223 (281)
T TIGR03340       144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG  223 (281)
T ss_pred             hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence            466788999999999988888753322211000    0     0           0000000111222    23344567


Q ss_pred             HHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhe
Q 026598           63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM  119 (236)
Q Consensus        63 g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~  119 (236)
                      ++.+++.++...|++.++|+.-++.+++.+++.+++||+++..++.|.+++..|+.+
T Consensus       224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            788899999999999999999999999999999999999999999999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.81  E-value=0.0081  Score=53.64  Aligned_cols=115  Identities=15%  Similarity=0.153  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhccCC---CCCC--C------CCcccccc---hhHHHHHHHHHHHHHHHHHHHhh
Q 026598            8 GFILAVVSSAFIGSSFIIKKKGLRKAGANG---ARAG--S------GGYGYLLE---PLWWVGMFTMIVGEIANFVAYIY   73 (236)
Q Consensus         8 gv~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~~~--~------~~~~~~~~---~~W~~G~~~~~~g~~~~~~al~~   73 (236)
                      +...++.+.++.+..+...|.+..+.+...   .|-.  .      ..++..|+   +....|...+.....+.+.++.+
T Consensus         5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~   84 (295)
T PRK11689          5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY   84 (295)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            456677888888888888888765543210   1110  0      00111121   11222333333444555566654


Q ss_pred             ----cCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeee
Q 026598           74 ----APAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL  122 (236)
Q Consensus        74 ----ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~  122 (236)
                          .|.+..+-+.....++..++++.++|||+++++|.|+++...|+.++..
T Consensus        85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~  137 (295)
T PRK11689         85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG  137 (295)
T ss_pred             hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence                3555566778888999999999999999999999999999999987764

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.74  E-value=0.00033  Score=62.65  Aligned_cols=116  Identities=21%  Similarity=0.234  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC---C---------------CCCcc------cccchh-HH----HH
Q 026598            6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA---G---------------SGGYG------YLLEPL-WW----VG   56 (236)
Q Consensus         6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~---~---------------~~~~~------~~~~~~-W~----~G   56 (236)
                      ..|..+++.++++.+.+.+++||..++.+......   .               .+...      .-.++. |+    .|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            46999999999999999999998533221100000   0               00000      001222 32    24


Q ss_pred             HHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598           57 MFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        57 ~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      +...++++.+++.++.-.+..-++++..+..+++.+++.+++||+++..+++|.++++.|+.+..
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence            44556777788888888899999999999999999999999999999999999999999987653

>TIGR00688 rarD rarD protein

Probab=97.73  E-value=0.0048  Score=53.66  Aligned_cols=62  Identities=11%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598           60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      +..+..+.+.++...|.+-.+-+...+.++..+++++++|||+++++|.|..+..+|++++.
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            55777899999999999999999999999999999999999999999999999999998754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.70  E-value=0.00028  Score=64.74  Aligned_cols=78  Identities=23%  Similarity=0.434  Sum_probs=66.9

Q ss_pred             cccchhHHHH-H-HHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeec
Q 026598           47 YLLEPLWWVG-M-FTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA  124 (236)
Q Consensus        47 ~~~~~~W~~G-~-~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~  124 (236)
                      ..++|.|.-= + .+++.+......||.+.+.+-+|=|...+++++.+++.+++|||.++.++.|+.+|+.|+++++...
T Consensus        74 ~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD  153 (334)
T PF06027_consen   74 VLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD  153 (334)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence            3555555432 2 2467888899999999999999999999999999999999999999999999999999998877664

Some of the sequences in this family are annotated as putative membrane proteins.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.57  E-value=0.024  Score=48.87  Aligned_cols=71  Identities=25%  Similarity=0.397  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHH-HHhccccccchhhHHHHHhhhhheeeeecCC
Q 026598           56 GMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAH-FMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL  126 (236)
Q Consensus        56 G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~-~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~  126 (236)
                      |......+..+.+.++...|.+..+++...+.++..+++. +++|||+++++|.|..+...|+.++...+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          76 ALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            4455677788999999999999999999999999999997 7779999999999999999998877554443

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.52  E-value=0.0021  Score=57.57  Aligned_cols=75  Identities=15%  Similarity=0.365  Sum_probs=66.5

Q ss_pred             chhHHHHHHH---HHHHHHHHHHHHhhcCchhhhchhh-HHHHHHHHHHHHHhccccccch----hhHHHHHhhhhheee
Q 026598           50 EPLWWVGMFT---MIVGEIANFVAYIYAPAVLVTPLGA-LSIIVSAVLAHFMLNEKLQKMG----MLGCLLCVVGSTMIV  121 (236)
Q Consensus        50 ~~~W~~G~~~---~~~g~~~~~~al~~ap~slV~Pl~~-~~lv~~~~~a~~~l~e~~~~~~----~~g~~li~~G~~~~v  121 (236)
                      ...|..|+..   ...|+++++.|.....++.-.|+.. ..++++.+++.+++||+.++++    ..|.++++.|+.++.
T Consensus        56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~  135 (290)
T TIGR00776        56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS  135 (290)
T ss_pred             cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence            3456667776   8899999999999999999999999 9999999999999999999999    899999999988775


Q ss_pred             eec
Q 026598          122 LHA  124 (236)
Q Consensus       122 ~~~  124 (236)
                      ...
T Consensus       136 ~~~  138 (290)
T TIGR00776       136 RSK  138 (290)
T ss_pred             ecc
Confidence            543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.42  E-value=0.0011  Score=49.68  Aligned_cols=65  Identities=15%  Similarity=0.059  Sum_probs=37.4

Q ss_pred             cchhHHHHHH-HHHHHHHHHHHHHhhcCchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHH
Q 026598           49 LEPLWWVGMF-TMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLC  113 (236)
Q Consensus        49 ~~~~W~~G~~-~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li  113 (236)
                      +++.|..+.+ .++++..+...|+...|.++.-|+ .+++.+...+.+.++.||+++..++.|+.+|
T Consensus        27 ~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   27 TQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             -------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3455555554 578888899999999999999997 4699999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.42  E-value=0.00074  Score=59.32  Aligned_cols=71  Identities=20%  Similarity=0.323  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCc
Q 026598           57 MFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE  127 (236)
Q Consensus        57 ~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~  127 (236)
                      ..++.+...+.+.++...|++.-|=+...-++++++++.+++|+|+++++|.+..+...|++++-..+..+
T Consensus        24 A~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   24 ALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            46789999999999999999999999999999999999999999999999999999999998876655443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.41  E-value=0.0084  Score=53.38  Aligned_cols=65  Identities=17%  Similarity=0.265  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHH-hhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598           56 GMFTMIVGEIANFVAY-IYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        56 G~~~~~~g~~~~~~al-~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      |......+..+.+.+. ...|....+-+.....++..+++++ +|||+++++|.|..+...|+.++.
T Consensus        75 g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~  140 (292)
T PRK11272         75 GLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN  140 (292)
T ss_pred             HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence            4444445566667777 8889888999999999999999975 699999999999999999987653

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.20  E-value=0.044  Score=49.15  Aligned_cols=72  Identities=17%  Similarity=0.251  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccC
Q 026598           58 FTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES  129 (236)
Q Consensus        58 ~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~  129 (236)
                      .++.++..++-.|+.+.|.+.-+=+-+..++++++++..++|||.+++|+.+++++++|+.+......++++
T Consensus        72 ~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~  143 (303)
T PF08449_consen   72 FLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS  143 (303)
T ss_pred             HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence            445677888999999999999999999999999999999999999999999999999999998877665444

; GO: 0055085 transmembrane transport

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.19  E-value=0.002  Score=57.54  Aligned_cols=64  Identities=16%  Similarity=0.022  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeec
Q 026598           61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA  124 (236)
Q Consensus        61 ~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~  124 (236)
                      .++..+.+.++...|++.++++.-+..+++.+++.++++|+++..++.|.++++.|+.++...+
T Consensus       224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999987765443

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.19  E-value=0.0028  Score=54.74  Aligned_cols=116  Identities=26%  Similarity=0.279  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-CC------C--------CCCCc-c-cccchhHH--HHHHHHHHHHHH
Q 026598            6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANG-AR------A--------GSGGY-G-YLLEPLWW--VGMFTMIVGEIA   66 (236)
Q Consensus         6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~-~~------~--------~~~~~-~-~~~~~~W~--~G~~~~~~g~~~   66 (236)
                      ..|..+++.++++.+.+.+.+|+.. +.+... ..      .        ..+.. + ..+.....  .|+...+++..+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999998754 211100 00      0        00000 1 11111111  234444467888


Q ss_pred             HHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeee
Q 026598           67 NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL  122 (236)
Q Consensus        67 ~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~  122 (236)
                      .+.++...|.+.++|+.....+++.+++..+++|+++.+++.|+.+++.|+.+...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~  287 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL  287 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999999999999876543

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.17  E-value=0.0061  Score=46.89  Aligned_cols=72  Identities=17%  Similarity=0.039  Sum_probs=60.8

Q ss_pred             cchhHHHHH-HHHHHHHHHHHHHHhhcCchhhhchhh-HHHHHHHHHHHHHhccccccchhhHHHHHhhhhhee
Q 026598           49 LEPLWWVGM-FTMIVGEIANFVAYIYAPAVLVTPLGA-LSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI  120 (236)
Q Consensus        49 ~~~~W~~G~-~~~~~g~~~~~~al~~ap~slV~Pl~~-~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~  120 (236)
                      +++.|...+ ..+..+..+-..|+...|.++.-++=+ ++.+.+.+.+.++.||+++..++.|..+++.|++.+
T Consensus        27 ~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         27 SRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            356655544 456777788888899999999988754 999999999999999999999999999999999875

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.16  E-value=0.0022  Score=57.22  Aligned_cols=65  Identities=20%  Similarity=0.295  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhee
Q 026598           55 VGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI  120 (236)
Q Consensus        55 ~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~  120 (236)
                      .|+. +.++..++..++.+.+.+..+-+.+.+.+++.+++++++|||++++++.|.++.+.|+.+.
T Consensus        71 ~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        71 VAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            4555 4677789999999999999999999999999999999999999999999999999999754

specificities overlap.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.08  E-value=0.013  Score=45.35  Aligned_cols=73  Identities=15%  Similarity=0.200  Sum_probs=61.0

Q ss_pred             ccchhHHHHHH-HHHHHHHHHHHHHhhcCchhhhchh-hHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhee
Q 026598           48 LLEPLWWVGMF-TMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI  120 (236)
Q Consensus        48 ~~~~~W~~G~~-~~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~  120 (236)
                      +++|.|...+. .++++..+-..|+...|.++.-|.= +++.+...+.+.++.||+++..++.|..+++.|++.+
T Consensus        32 f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         32 FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            34566666554 3567777888888999999998874 5889999999999999999999999999999998764

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.87  E-value=0.0042  Score=47.89  Aligned_cols=72  Identities=14%  Similarity=0.113  Sum_probs=61.1

Q ss_pred             cchhHHHHHH-HHHHHHHHHHHHHhhcCchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhee
Q 026598           49 LEPLWWVGMF-TMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI  120 (236)
Q Consensus        49 ~~~~W~~G~~-~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~  120 (236)
                      +|+.|.+.+. .+++++.+-..|+...|..+--++ ++++.+...+.+..+.||+++..+++|..++++|++.+
T Consensus        28 ~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          28 TRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            3556666554 467888888899999999998775 78899999999999999999999999999999998764

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=96.84  E-value=0.024  Score=52.57  Aligned_cols=60  Identities=15%  Similarity=0.420  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHH------hccccccchhhHHHHHhhhhheeee
Q 026598           63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFM------LNEKLQKMGMLGCLLCVVGSTMIVL  122 (236)
Q Consensus        63 g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~------l~e~~~~~~~~g~~li~~G~~~~v~  122 (236)
                      ...+.+.++.+.|++..+=+.....++..++++++      +|||++++++.|++++.+|+.++..
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            34578899999999999999999999999999999      6999999999999999999987654

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=96.79  E-value=0.0066  Score=55.81  Aligned_cols=67  Identities=13%  Similarity=0.165  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598           54 WVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        54 ~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      ..|+.-. .+..+...++...|++..+=+-+.+.+++++++++++|||++++.+.|.++++.|+.+..
T Consensus       119 p~gl~~~-~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        119 PQGLCHL-FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHH-HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            3444433 245566799999999999999999999999999999999999999999999999998865

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=96.70  E-value=0.23  Score=44.24  Aligned_cols=112  Identities=15%  Similarity=0.141  Sum_probs=72.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC---CCC--C--------CCCcccccchhH----HHHHHHHHHHHHH
Q 026598            4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG---ARA--G--------SGGYGYLLEPLW----WVGMFTMIVGEIA   66 (236)
Q Consensus         4 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~~--~--------~~~~~~~~~~~W----~~G~~~~~~g~~~   66 (236)
                      +...|+.+.+.+.++.+.+.+..|.+..+.+...   .|.  +        ...+...+++.|    +.|.. +.....+
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~   87 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYL   87 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHH
Confidence            3467889999999999999999998765533210   111  0        000011122223    44543 4566677


Q ss_pred             HHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeee
Q 026598           67 NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL  122 (236)
Q Consensus        67 ~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~  122 (236)
                      .+.++...|.+...-+.....++..++++    ||.+  ++.+..+...|+.+++.
T Consensus        88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         88 FYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLP  137 (293)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeee
Confidence            88899999999888777777777777663    5544  45667777888877653

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.40  E-value=0.043  Score=50.51  Aligned_cols=126  Identities=19%  Similarity=0.227  Sum_probs=78.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC--CCC-------------CCCcccccchhHHHHHHHH-HHHHHH
Q 026598            3 SSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGA--RAG-------------SGGYGYLLEPLWWVGMFTM-IVGEIA   66 (236)
Q Consensus         3 ~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~--~~~-------------~~~~~~~~~~~W~~G~~~~-~~g~~~   66 (236)
                      ++..+|-++++.||++.|+..++||+-.++.+....  .-|             -+ ++-+++-.|-...... +...++
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile-~~~i~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILE-RSGIESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhee-hhhhhccCCChhhHHHHHHHHHH
Confidence            356889999999999999999999997766443100  000             00 0111111121111222 222334


Q ss_pred             HHHHHhhcCchh-------hhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccC
Q 026598           67 NFVAYIYAPAVL-------VTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES  129 (236)
Q Consensus        67 ~~~al~~ap~sl-------V~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~  129 (236)
                      .+.-|...|..+       +..=...+-++++++..++.|+++++.-++|-++++.|.++.....+++++
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~  312 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE  312 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence            455555554433       222234457888999999999999999999999999999887666655443

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.11  E-value=0.01  Score=52.93  Aligned_cols=114  Identities=23%  Similarity=0.383  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--CCC-CC-----CCcccccc--------hhHHH--HHHHHHHHHHHH
Q 026598            6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANG--ARA-GS-----GGYGYLLE--------PLWWV--GMFTMIVGEIAN   67 (236)
Q Consensus         6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~--~~~-~~-----~~~~~~~~--------~~W~~--G~~~~~~g~~~~   67 (236)
                      .+|+.+..+| .+.+...++-++...-.+.+.  .|- ..     .-.-|.+.        +.|++  |.... .|..+.
T Consensus        37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~-tgvmlm  114 (346)
T KOG4510|consen   37 NLGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGF-TGVMLM  114 (346)
T ss_pred             ccCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhh-hHHHHH
Confidence            3567777777 777777777777544433220  110 00     00011111        12332  33321 334456


Q ss_pred             HHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598           68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        68 ~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      +-||.+.|.+=-.-+.-.+.+++.++|+.+||||.|+.|.+|+.+...|+++++
T Consensus       115 yya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen  115 YYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV  168 (346)
T ss_pred             HHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence            666666666655556778899999999999999999999999999999999875

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=96.08  E-value=0.014  Score=51.96  Aligned_cols=117  Identities=15%  Similarity=0.232  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC-------C----------CCCccccc----c--------hhHHH
Q 026598            5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA-------G----------SGGYGYLL----E--------PLWWV   55 (236)
Q Consensus         5 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~-------~----------~~~~~~~~----~--------~~W~~   55 (236)
                      ...|..+++.|+++.+...++.||..++.+.+..+.       +          .+..+...    +        ..|..
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            467999999999999999999888544111110000       0          00000000    0        11211


Q ss_pred             HHHH----HHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598           56 GMFT----MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        56 G~~~----~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      +...    +......++.++...+++-.+-.+.+..+++.+++..+++|+++..++.|.++++.|+.+.-
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence            2111    11122344567888888888999999999999999999999999999999999999997643

specificities overlap.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.08  E-value=0.33  Score=43.42  Aligned_cols=79  Identities=13%  Similarity=0.305  Sum_probs=66.2

Q ss_pred             hhHHHHHHH---HHHHHHHHHHHHhhcCchhhhchh-hHHHHHHHHHHHHHhccccccchh----hHHHHHhhhhheeee
Q 026598           51 PLWWVGMFT---MIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTMIVL  122 (236)
Q Consensus        51 ~~W~~G~~~---~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~e~~~~~~~----~g~~li~~G~~~~v~  122 (236)
                      ..|+.+++.   -.+|.++|+.++.....|.-.|+. +..++.|.+.+.++++|--+..++    .+.++++.|+.+...
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            556766653   478999999999999999999998 899999999999999998888876    588899999987766


Q ss_pred             ecCCccC
Q 026598          123 HAPLEES  129 (236)
Q Consensus       123 ~~~~~~~  129 (236)
                      ..+++++
T Consensus       123 ~~~~~~~  129 (269)
T PF06800_consen  123 QDKKSDK  129 (269)
T ss_pred             ccccccc
Confidence            6555543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=96.05  E-value=0.28  Score=44.34  Aligned_cols=72  Identities=19%  Similarity=0.248  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeee
Q 026598           52 LWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH  123 (236)
Q Consensus        52 ~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~  123 (236)
                      ....=.++++.|.....++|-...+|--|-+-+.-++|.-+|+..++|++++.++|.|...+.+|.+.+...
T Consensus        88 lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   88 LFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             eecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            344456788999999999999999999999999999999999999999999999999999999999887665

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=95.93  E-value=0.018  Score=51.56  Aligned_cols=113  Identities=19%  Similarity=0.194  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-C-CC-----CC----CC----cccccchhHH----HHHHHHHHHHHH
Q 026598            6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANG-A-RA-----GS----GG----YGYLLEPLWW----VGMFTMIVGEIA   66 (236)
Q Consensus         6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~-~-~~-----~~----~~----~~~~~~~~W~----~G~~~~~~g~~~   66 (236)
                      -.|+..++.|+++.+.-...-|+.. ..+.+- . ..     +.    ..    ++. .++.+|    .|+. ..+++.+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gi~-~~ia~~~  227 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAFG-VDGLSVLLPQAIGMVIGGIIFNLGHILAKPL-KKYAILLNILPGLM-WGIGNFF  227 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcC-CCcceehhHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHH-HHHHHHH
Confidence            5699999999999888877766531 111100 0 00     00    00    111 122333    3444 4677888


Q ss_pred             HHHHHh-hcCchhhhchhhHHHHHHHHHHHHHhccccccchh----hHHHHHhhhhheee
Q 026598           67 NFVAYI-YAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTMIV  121 (236)
Q Consensus        67 ~~~al~-~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~----~g~~li~~G~~~~v  121 (236)
                      .+.+.. ..+.+.-.++.....+.+.+.+.+++||+.+++|+    .|.++++.|+.++.
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            888889 99999999999999999999999999999999999    99999999988764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=95.92  E-value=0.027  Score=52.33  Aligned_cols=85  Identities=14%  Similarity=0.208  Sum_probs=68.3

Q ss_pred             HHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccCcC-----CHHHHHHHh
Q 026598           66 ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLN-----SVQEIWVLA  140 (236)
Q Consensus        66 ~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~~~-----~~~~l~~~~  140 (236)
                      ..=.||++-.++-.+=+.+.|=+|++.++..+.+||+|....+++++.+.|++++.....++.++.     ...+++.++
T Consensus       175 ~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL~  254 (416)
T KOG2765|consen  175 TSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLALL  254 (416)
T ss_pred             HHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHHHHH
Confidence            334689999999999999999999999999999999999999999999999998887766443332     345677666


Q ss_pred             cchhHHHHHH
Q 026598          141 TQPAFLLYVG  150 (236)
Q Consensus       141 ~~~~f~~y~~  150 (236)
                      ..-.+.+|..
T Consensus       255 sA~~YavY~v  264 (416)
T KOG2765|consen  255 SALLYAVYTV  264 (416)
T ss_pred             HHHHHHHHHH
Confidence            6555666654

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=95.79  E-value=0.084  Score=41.80  Aligned_cols=112  Identities=22%  Similarity=0.349  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhccCC--CCCC---------------------CC------Cccccc-----chh-
Q 026598            8 GFILAVVSSAFIGSSFIIKKKGLRKAGANG--ARAG---------------------SG------GYGYLL-----EPL-   52 (236)
Q Consensus         8 gv~lAl~sa~~~a~g~vlqk~~~~~~~~~~--~~~~---------------------~~------~~~~~~-----~~~-   52 (236)
                      |..+++.|+++.++=.+++|+..++..+++  .+.-                     ++      ..+..+     .+. 
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            578899999999999999988766631100  0000                     00      000111     212 


Q ss_pred             -HHHHHH--HHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhe
Q 026598           53 -WWVGMF--TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM  119 (236)
Q Consensus        53 -W~~G~~--~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~  119 (236)
                       ++....  +...-+..++..+...++.--+=++.+--+...+++..+.+|++|..++.|..+++.|...
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence             222111  1123345667777778888888888999999999999999999999999999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.77  E-value=0.1  Score=48.21  Aligned_cols=121  Identities=17%  Similarity=0.223  Sum_probs=89.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-c--------------------CCCCCCCCCccccc---chhHHHH
Q 026598            1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAG-A--------------------NGARAGSGGYGYLL---EPLWWVG   56 (236)
Q Consensus         1 ~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~-~--------------------~~~~~~~~~~~~~~---~~~W~~G   56 (236)
                      |+++..+|++..+++.+|.+.=.+-||| .++=+ |                    ...|   +..++++   ...|..+
T Consensus         1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~---~f~~~~~~~~~~~~~~~   76 (345)
T PRK13499          1 MSNAIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGGIFSWLILPWLIAALLLP---DFWAYYSSFSGSTLLPV   76 (345)
T ss_pred             CCchhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHhcCHHHHHHH
Confidence            7788999999999999999888888888 32211 0                    0000   1223333   2446655


Q ss_pred             HH---HHHHHHHHHHHHHhhcCchhhhchh-hHHHHHHHHHHHHHhcccc---ccch----hhHHHHHhhhhheeeeecC
Q 026598           57 MF---TMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKL---QKMG----MLGCLLCVVGSTMIVLHAP  125 (236)
Q Consensus        57 ~~---~~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~e~~---~~~~----~~g~~li~~G~~~~v~~~~  125 (236)
                      ++   +-.+|.+.++.+......|+-.|++ +++++.+.++...+.+|=-   +..+    ..|++++++|+.+....+.
T Consensus        77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~  156 (345)
T PRK13499         77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ  156 (345)
T ss_pred             HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence            54   3478999999999999999999996 6788999999999998643   4433    5999999999998877544

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=95.72  E-value=0.14  Score=45.50  Aligned_cols=121  Identities=18%  Similarity=0.162  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-CC------------CCC-CCCcccccchhHH-HHHHH----HHHHHHH
Q 026598            6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGAN-GA------------RAG-SGGYGYLLEPLWW-VGMFT----MIVGEIA   66 (236)
Q Consensus         6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~------------~~~-~~~~~~~~~~~W~-~G~~~----~~~g~~~   66 (236)
                      -.|+.+|+.+..|.+.=.+.-||.-+..+.. +.            +-| .+..+.+.+|.-. .+...    -.+=+.+
T Consensus       147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsL  226 (292)
T COG5006         147 PVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSL  226 (292)
T ss_pred             HHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHH
Confidence            4799999999999998888877754321110 00            000 0112334444433 33333    3344568


Q ss_pred             HHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCC
Q 026598           67 NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL  126 (236)
Q Consensus        67 ~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~  126 (236)
                      ..+|+.-.|...-.-+.++...++++.+..+++|++|..||.|+.+++.++.-.....++
T Consensus       227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~  286 (292)
T COG5006         227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK  286 (292)
T ss_pred             HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence            999999999999999999999999999999999999999999999999998755444333

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=94.36  E-value=0.73  Score=41.57  Aligned_cols=118  Identities=19%  Similarity=0.147  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----hhhhhcc--------------CCCCCCCCCcccccchhHHHHHHHHHHHHHHH
Q 026598            6 LIGFILAVVSSAFIGSSFIIKKK----GLRKAGA--------------NGARAGSGGYGYLLEPLWWVGMFTMIVGEIAN   67 (236)
Q Consensus         6 ~igv~lAl~sa~~~a~g~vlqk~----~~~~~~~--------------~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~   67 (236)
                      --|+++++.+.++.+.=--.-|.    +..|.-.              .-.|.-++.++..|+|+=+....+..+-...|
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~n   85 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLN   85 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            35788888888886665444333    1111000              00011112344677776666655555555677


Q ss_pred             HHHHhhcCch---hhhchhh-HHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeee
Q 026598           68 FVAYIYAPAV---LVTPLGA-LSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH  123 (236)
Q Consensus        68 ~~al~~ap~s---lV~Pl~~-~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~  123 (236)
                      .--+-++|-.   +=+.+|= +..++|.++++.++|||+++.+|+.+.+..+|+..-...
T Consensus        86 W~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          86 WWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            7778888765   3233332 344678899999999999999999999999999765443

>TIGR00803 nst UDP-galactose transporter

Probab=94.19  E-value=0.21  Score=42.50  Aligned_cols=115  Identities=17%  Similarity=0.212  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC--------------------CCCCCC--CCcccc-c-chhHHHHHHH
Q 026598            4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN--------------------GARAGS--GGYGYL-L-EPLWWVGMFT   59 (236)
Q Consensus         4 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~--------------------~~~~~~--~~~~~~-~-~~~W~~G~~~   59 (236)
                      +...|+..-+.+.++.+...+.|++..++.+..                    ..++++  ...+.+ . ++.+|.-...
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL  161 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence            445677777777777788888888864432110                    000000  011111 1 2223333344


Q ss_pred             HHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhh
Q 026598           60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGST  118 (236)
Q Consensus        60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~  118 (236)
                      ...|..+-...+.+++.....=......+++.+++.++.+|+++...|.|+.++..|+.
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF  220 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence            56677777888888999999999999999999999999999999999999999998864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=93.61  E-value=0.44  Score=43.97  Aligned_cols=75  Identities=17%  Similarity=0.214  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCc
Q 026598           53 WWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE  127 (236)
Q Consensus        53 W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~  127 (236)
                      |-+=..++.+-+-.+++++...|++.=++...+-++.++++...+|+||+++++|...++...|+.++=...+++
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~  169 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP  169 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC
Confidence            333445777887799999999999999999999999999999999999999999999999999998876443433

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=92.87  E-value=1.1  Score=41.20  Aligned_cols=51  Identities=16%  Similarity=0.248  Sum_probs=41.4

Q ss_pred             HHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhe
Q 026598           69 VAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM  119 (236)
Q Consensus        69 ~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~  119 (236)
                      .++.-.++.--+=.+.+--++..+++..+++|++|..+++|.++++.|+.+
T Consensus       295 ~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l  345 (350)
T PTZ00343        295 YCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL  345 (350)
T ss_pred             HHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence            355555555555566677788899999999999999999999999999865

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=91.35  E-value=0.53  Score=42.11  Aligned_cols=61  Identities=23%  Similarity=0.380  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchh----hHHHHHhhhhhe
Q 026598           59 TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTM  119 (236)
Q Consensus        59 ~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~----~g~~li~~G~~~  119 (236)
                      +...|+++.+.+-.-.-+..=-|++..+++.+.+-+-+++||+=+++|+    .|+++++.|.++
T Consensus       204 ~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  204 IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            3467888888888888888999999999999999999999999999885    788888888764

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=89.36  E-value=0.78  Score=35.51  Aligned_cols=77  Identities=18%  Similarity=0.298  Sum_probs=62.1

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhchh-hHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598           45 YGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV  121 (236)
Q Consensus        45 ~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v  121 (236)
                      +..+.+...|+=+.+.--|+...+.-++-+|.++-.|.. +++..|+++++..+-.|.-.++...|+.++++|+.+.+
T Consensus        47 ~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   47 KTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            345666777888888888899999999999999999986 56889999988776444455666899999999987653

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=88.54  E-value=2.4  Score=32.59  Aligned_cols=47  Identities=17%  Similarity=0.379  Sum_probs=38.4

Q ss_pred             hhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCC
Q 026598           79 VTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL  126 (236)
Q Consensus        79 V~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~  126 (236)
                      -+.-|.+-+..++......-|.++++.||.|...|.+|+.+ +.++|.
T Consensus        61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~v-il~~pR  107 (109)
T COG1742          61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAV-ILFGPR  107 (109)
T ss_pred             HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceee-eEeCCC
Confidence            34567788888899999999999999999999999999554 455553

>PRK02237 hypothetical protein; Provisional

Probab=88.02  E-value=3  Score=32.26  Aligned_cols=45  Identities=20%  Similarity=0.403  Sum_probs=37.8

Q ss_pred             hchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecC
Q 026598           80 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP  125 (236)
Q Consensus        80 ~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~  125 (236)
                      +.-|.+-++.+.+..+..-|+|+++.|++|..+|..|+.++. ++|
T Consensus        63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~-~~p  107 (109)
T PRK02237         63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM-YAP  107 (109)
T ss_pred             HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe-ecC
Confidence            445677788888999999999999999999999999987653 555

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=86.79  E-value=1.3  Score=40.02  Aligned_cols=79  Identities=13%  Similarity=0.212  Sum_probs=59.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhc-CchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccC
Q 026598           51 PLWWVGMFTMIVGEIANFVAYIYA-PAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES  129 (236)
Q Consensus        51 ~~W~~G~~~~~~g~~~~~~al~~a-p~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~  129 (236)
                      +.|..=+.++-.-++.|=.|+.|. |..+=.=+-+.+++.|.+++..++|+|-+.++...++++.+|+++...++.++..
T Consensus        65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~  144 (330)
T KOG1583|consen   65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR  144 (330)
T ss_pred             hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence            345555555445566777777764 3333334567899999999999999999999999999999999988887766543

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=85.89  E-value=1.1  Score=34.58  Aligned_cols=45  Identities=24%  Similarity=0.527  Sum_probs=37.6

Q ss_pred             hchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecC
Q 026598           80 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP  125 (236)
Q Consensus        80 ~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~  125 (236)
                      +.=|.+=++.+.+..+..-|+|+++.|++|..+|..|+.++ .++|
T Consensus        61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI-~~~P  105 (107)
T PF02694_consen   61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII-LFAP  105 (107)
T ss_pred             HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe-EecC
Confidence            34567778888899999999999999999999999998765 4444

; GO: 0016020 membrane

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.08  E-value=1.6  Score=33.26  Aligned_cols=36  Identities=17%  Similarity=0.214  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhe
Q 026598           84 ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM  119 (236)
Q Consensus        84 ~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~  119 (236)
                      .+++..=.+||.+++||++++..++|..++..|+.+
T Consensus        77 VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f  112 (116)
T COG3169          77 VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF  112 (116)
T ss_pred             HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence            466777788999999999999999999888877654

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=81.51  E-value=13  Score=32.43  Aligned_cols=109  Identities=22%  Similarity=0.351  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC--------------------CCCCCC--CCcccccchhHHH--HHHH
Q 026598            4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN--------------------GARAGS--GGYGYLLEPLWWV--GMFT   59 (236)
Q Consensus         4 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~--------------------~~~~~~--~~~~~~~~~~W~~--G~~~   59 (236)
                      +..+|+.+.+.++++.+.+-+..+|-.++.+.+                    ..++++  .....++...|+.  =+.+
T Consensus       111 ~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~  190 (244)
T PF04142_consen  111 NPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL  190 (244)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH
Confidence            467999999999999999999988876664320                    000000  1112233222222  2233


Q ss_pred             HHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHH
Q 026598           60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLL  112 (236)
Q Consensus        60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l  112 (236)
                      ...|.+.-...+.+++-.+=.=-.+++++.+.+++..+.+.+++..-.+|+.+
T Consensus       191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            45666666667777777666666788899999999999999999887777654

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=80.61  E-value=11  Score=33.56  Aligned_cols=114  Identities=17%  Similarity=0.173  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC--C------------------CCCc----ccccchhHHHHHH-HH
Q 026598            6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA--G------------------SGGY----GYLLEPLWWVGMF-TM   60 (236)
Q Consensus         6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~--~------------------~~~~----~~~~~~~W~~G~~-~~   60 (236)
                      ..|+.+.+.+-++.+.-.+.|+|-.++.+.+..+.  .                  .+..    -..+.|..+.-+. ..
T Consensus       153 ~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s  232 (303)
T PF08449_consen  153 ALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS  232 (303)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH
Confidence            34999999999999999999999765544321100  0                  0000    0122343333222 22


Q ss_pred             HHHHHHH---HHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhe
Q 026598           61 IVGEIAN---FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM  119 (236)
Q Consensus        61 ~~g~~~~---~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~  119 (236)
                      ..+.+++   +.....-.....+-.+.+--..+.+++.++.+++++..+|.|.+++..|..+
T Consensus       233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~  294 (303)
T PF08449_consen  233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL  294 (303)
T ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence            3333333   2233344444555566666788899999999999999999999999999865

; GO: 0055085 transmembrane transport

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.96
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.81

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.96  E-value=5.1e-09  Score=79.94  Aligned_cols=98  Identities=12%  Similarity=0.063  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhch-hhHHHHH
Q 026598           11 LAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIV   89 (236)
Q Consensus        11 lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~   89 (236)
                      +-+.+.++-+.|....|++.      +         ..+.+.++.+...++++..+...++...|.+.+.|+ .+++.++
T Consensus         6 ~l~~a~~~e~~~~~~lK~s~------~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~   70 (110)
T 3b5d_A            6 YLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVL   70 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhcc------C---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHH
Confidence            44567777888888888851      0         112344566777888999999999999999999999 8999999


Q ss_pred             HHHHHHHHhccccccchhhHHHHHhhhhheeeee
Q 026598           90 SAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH  123 (236)
Q Consensus        90 ~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~  123 (236)
                      +.+++.+++||+++..++.|+.+++.|+..+-..
T Consensus        71 ~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999877544

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.81  E-value=7.9e-09  Score=82.06  Aligned_cols=99  Identities=12%  Similarity=0.066  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhch-hhHHHHH
Q 026598           11 LAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIV   89 (236)
Q Consensus        11 lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~   89 (236)
                      +-+.+.++-+.|....|++.      +         ..+.+.++.|+..+++++.+...++...|++.+.|+ ..++.++
T Consensus         6 ~Ll~ail~ev~~~~~lK~s~------g---------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~   70 (137)
T 2i68_A            6 YLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVL   70 (137)
T ss_dssp             HHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc------c---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Confidence            34556777888888888862      0         011234567888899999999999999999999999 9999999


Q ss_pred             HHHHHHHHhccccccchhhHHHHHhhhhheeeeec
Q 026598           90 SAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA  124 (236)
Q Consensus        90 ~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~  124 (236)
                      +.+++.+++||+++..++.|+++++.|+.++...+
T Consensus        71 ~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999998875443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00