Citrus Sinensis ID: 026612

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREYEEGEPGSPRRWSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEcccccccEEEEEEEEEcccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccEEEEEEEEEccccHHHHHHHHHHcccccccEEHEHHHcccccEEEEEEcc
Coil and Loop (DISEMBL)
mtyyeddevvpeltlrididennnnnkgdylklreyeegepgsprrwscgkvWYWVKLAFFLTSVGLLAAVFIKWvgpffmdkevipiinwetttfstPVLAVLVFASValfptlllpsspsmwvagmtFGYGFGFLLIMSAVAVGIslpyfigshFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALirispfpyiIYNYCAVathvkygpyflgslvgmvpeIFVTIYTP
Flexible Loop (DISEMBL)
mtyyeddevvpeltlrididennnnnkgdylklreyeegepgsprrwsCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTP
Low Complexity Region (SEG)
MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREYEEGEPGSPRRWSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPvlavlvfasvalfptlllpsspsMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTP
Disordered region (IsUnstruct)
*********************************************RWSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY**
Disordered Region (DISOPRED)
*TYYE**EVVPEL****************************************YWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTP
Disordered Region (DISEMBL)
********VVPELTLRIDIDENNNNNKGDYLKLREY*********RWSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTP
Disordered Region (DISPRO)
*TYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREYE****GSPRRWSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTP
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREYEEGEPGSPRRWSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q55909	209	TVP38/TMEM64 family membr	N/A	no	0.483	0.545	0.302	0.0001

>sp|Q55909|Y305_SYNY3 TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 5/119 (4%)

Query: 117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILR 176
           LP S     AG+ FG   G + +     +G +  + +G  +L R  GW+ K        +
Sbjct: 35  LPGSILTLGAGVVFGVILGSIYVFIGATLGATAAFLVG-RYLAR--GWVAKKIAGNQKFK 91

Query: 177 AAGEGNWFHQFRTVALIRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234
           A  E       + V L R+SP FP+ + NY    T+V    Y +GSL GM+P   + +Y
Sbjct: 92  AIDEAVGKEGLKIVILTRLSPVFPFNLLNYAYGITNVSLKDYVIGSL-GMIPGTIMYVY 149

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
224071615	299	predicted protein [Populus trichocarpa]	0.978	0.772	0.715	2e-95
255537153	306	conserved hypothetical protein [Ricinus	0.957	0.738	0.725	6e-93
224058645	297	predicted protein [Populus trichocarpa]	0.991	0.787	0.730	3e-89
359474282	293	PREDICTED: TVP38/TMEM64 family membrane	0.927	0.747	0.686	8e-89
356513717	302	PREDICTED: TVP38/TMEM64 family membrane	0.970	0.758	0.662	2e-86
356565329	302	PREDICTED: uncharacterized protein LOC10	0.978	0.764	0.672	2e-86
357476997	313	TVP38/TMEM64 family membrane protein slr	0.944	0.712	0.640	5e-83
15221330	303	SNARE associated Golgi protein family [A	0.978	0.762	0.641	2e-82
356497185	294	PREDICTED: TVP38/TMEM64 family membrane	0.991	0.795	0.638	2e-81
297803836	296	hypothetical protein ARALYDRAFT_492585 [	0.991	0.790	0.616	3e-80

>gi|224071615|ref|XP_002303542.1| predicted protein [Populus trichocarpa] gi|222840974|gb|EEE78521.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 176/246 (71%), Positives = 202/246 (82%), Gaps = 15/246 (6%)

Query: 1   MTYYEDDEVVPELTLRIDID--ENNNNNKGDYLKLREYEEGEPGSPRRWS-CG------- 50
           MT+YEDD VVPEL + ++ D  +  +N++GDY+ LR+    E G+  R + CG       
Sbjct: 1   MTFYEDDSVVPELIMSMEGDKIDGGDNSEGDYVNLRD----ENGAGERCNLCGFYWGFGW 56

Query: 51  -KVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASV 109
              WYWVKLA   T +GLLAA  + WVGPF MDKE+IPI+NWET TFSTPVLA+L+FASV
Sbjct: 57  SVFWYWVKLALLFTFIGLLAAACVMWVGPFLMDKEIIPIMNWETRTFSTPVLAILLFASV 116

Query: 110 ALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYP 169
           ALFPTLLLPSSPSMWVAGMTFGYG GFLLI++A AVG+SLPY IGS FLH+IQGWLEKYP
Sbjct: 117 ALFPTLLLPSSPSMWVAGMTFGYGIGFLLIITAAAVGVSLPYLIGSLFLHKIQGWLEKYP 176

Query: 170 KKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEI 229
           K+AAILRAAGEGNWFHQFR V LIRISPFPYI+YNYCAVAT+VKYGPY LGSLVGMVPEI
Sbjct: 177 KRAAILRAAGEGNWFHQFRAVTLIRISPFPYILYNYCAVATNVKYGPYLLGSLVGMVPEI 236

Query: 230 FVTIYT 235
           FV+IYT
Sbjct: 237 FVSIYT 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537153|ref|XP_002509643.1| conserved hypothetical protein [Ricinus communis] gi|223549542|gb|EEF51030.1| conserved hypothetical protein [Ricinus communis]

 Score =  346 bits (887), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 172/237 (72%), Positives = 193/237 (81%), Gaps = 11/237 (4%)

Query: 10  VPELTLRIDIDENNNNN-KGDYLKLREYE----------EGEPGSPRRWSCGKVWYWVKL 58
           VP L    +   ++ +N KGDY+KL + E          EG      +W    VWYW KL
Sbjct: 13  VPHLRTTTETGNHDEDNIKGDYVKLGDCEVEEERLVGVIEGSSFCLWKWRGSVVWYWFKL 72

Query: 59  AFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLP 118
           A   T +GLLAAVF+KWVGPFFMDKE+IPIINWETTTFSTPVLA+LVFASVALFP++LLP
Sbjct: 73  ALLFTCLGLLAAVFLKWVGPFFMDKELIPIINWETTTFSTPVLAILVFASVALFPSILLP 132

Query: 119 SSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAA 178
           S+PSMWVAG+TFGYGFGFLLI+SA AVG+SLPYFIGS FLH+IQGWLEKYPKKAAILRAA
Sbjct: 133 STPSMWVAGLTFGYGFGFLLIISASAVGVSLPYFIGSLFLHKIQGWLEKYPKKAAILRAA 192

Query: 179 GEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235
           GEGNWFHQFR V  IRISPFPYI+YNYCAVAT+VKYGPY LGSL+GMVPEIFV IYT
Sbjct: 193 GEGNWFHQFRAVMFIRISPFPYILYNYCAVATNVKYGPYILGSLIGMVPEIFVAIYT 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058645|ref|XP_002299582.1| predicted protein [Populus trichocarpa] gi|222846840|gb|EEE84387.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 176/241 (73%), Positives = 202/241 (83%), Gaps = 7/241 (2%)

Query: 1   MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREYEEGEPGSPRRWSC-----GKV-WY 54
           MTYYEDD VV ++ +R++ D+ ++N+KGDY+ LR+ E G       + C     G V WY
Sbjct: 1   MTYYEDDSVVLDVRMRMEGDKIDDNSKGDYVNLRD-ENGAGERCNHFGCCWGLGGSVFWY 59

Query: 55  WVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPT 114
           WVKLA   T  GLLAA  ++WVGPF MDKE+IPIINWETTTFSTPVL VL+FASVAL PT
Sbjct: 60  WVKLAVTFTFFGLLAAACVEWVGPFLMDKEIIPIINWETTTFSTPVLVVLLFASVALLPT 119

Query: 115 LLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAI 174
           LLLPSSPSMWVAGMTFGYGFGFLLI++A AVG+SLPYFIGS FLH+I+GW +KYPK+AAI
Sbjct: 120 LLLPSSPSMWVAGMTFGYGFGFLLIITAAAVGVSLPYFIGSLFLHKIRGWFDKYPKRAAI 179

Query: 175 LRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234
           LRAAGEGNWFHQFR VALIRISPFPYI+YNYCAVAT+VKYGPYFLGSL GMVPEIFV +Y
Sbjct: 180 LRAAGEGNWFHQFRAVALIRISPFPYILYNYCAVATNVKYGPYFLGSLAGMVPEIFVAMY 239

Query: 235 T 235
           T
Sbjct: 240 T 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474282|ref|XP_002274997.2| PREDICTED: TVP38/TMEM64 family membrane protein slr0305 [Vitis vinifera] gi|297742653|emb|CBI34802.3| unnamed protein product [Vitis vinifera]

 Score =  332 bits (851), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 164/239 (68%), Positives = 195/239 (81%), Gaps = 20/239 (8%)

Query: 5   EDDEVVPELTLRIDIDENNNNNKGDYLKLRE----YEEG----EPGSPRRWSCGKVWYWV 56
           +D  VVPELTLR+          GDY+KLR+     EEG    EP +PRR   G +W+W 
Sbjct: 8   DDGGVVPELTLRM----------GDYVKLRQPAECEEEGFGDVEPSTPRRR--GLIWWWA 55

Query: 57  KLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLL 116
           K+A     +G+LA VF+KWVGPFFMDKE++PIINWETTTFSTPVLA+++F SVALFPTLL
Sbjct: 56  KVALLCVVLGVLAGVFLKWVGPFFMDKELMPIINWETTTFSTPVLALVIFGSVALFPTLL 115

Query: 117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILR 176
           LPS+PSMWVAGMTFGYG GFLLI++ VAVG+SLPY IGS F H+IQGWLEKYPKKA+I+R
Sbjct: 116 LPSTPSMWVAGMTFGYGLGFLLIIAGVAVGVSLPYIIGSLFHHKIQGWLEKYPKKASIIR 175

Query: 177 AAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235
            AGEGNWFHQFR V LIR+SPFPYI++NYC+VAT+VKYGPY +GSL+G+VPEIFV IYT
Sbjct: 176 LAGEGNWFHQFRAVTLIRVSPFPYILFNYCSVATNVKYGPYIMGSLIGVVPEIFVAIYT 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513717|ref|XP_003525557.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Glycine max]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 165/249 (66%), Positives = 192/249 (77%), Gaps = 20/249 (8%)

Query: 1   MTYYEDD------EVVPELTLRIDIDENNNNNKGDYLKLREYEE--------GEPGSPRR 46
           MTYYE+D      EVVP++TL I  D++N    GDY+KLR             EP  P  
Sbjct: 1   MTYYENDGGGRREEVVPDVTLTIQSDDSN----GDYVKLRANNNDGSPPGAAAEPSPPTI 56

Query: 47  WSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVF 106
            +   VWYWVKL      +G LA V + WVGP+F+DKE+IPIINWET TFSTPVL VLVF
Sbjct: 57  RAA--VWYWVKLVVLFLFLGFLAVVVLVWVGPYFIDKEIIPIINWETETFSTPVLTVLVF 114

Query: 107 ASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLE 166
            SVA+FPTLLLPS+PSMWVAGMTFGYGFGFLLI+SA A+G+SLP+ IG  F H+I+GWLE
Sbjct: 115 TSVAVFPTLLLPSTPSMWVAGMTFGYGFGFLLIISAAAIGVSLPFVIGKLFHHKIEGWLE 174

Query: 167 KYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMV 226
           KYPKKA+ILR+AG G+WFHQFR VA IRISPFPY+I+NYCAVAT+VKYGPY +GSLVGMV
Sbjct: 175 KYPKKASILRSAGGGSWFHQFRAVAFIRISPFPYLIFNYCAVATNVKYGPYMVGSLVGMV 234

Query: 227 PEIFVTIYT 235
           PEIFV IYT
Sbjct: 235 PEIFVAIYT 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565329|ref|XP_003550894.1| PREDICTED: uncharacterized protein LOC100788409 [Glycine max]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/247 (67%), Positives = 193/247 (78%), Gaps = 16/247 (6%)

Query: 1   MTYYEDD------EVVPELTLRIDIDENNNNNKGDYLKLR-EYEEGEP-GSPRRWS---- 48
           MTYYE D      EVVP++TL I  D+ N    GDY+KLR   ++G P G+    S    
Sbjct: 1   MTYYETDGGGRREEVVPDVTLTIQSDDGN----GDYVKLRANADDGSPPGAAAELSPPTL 56

Query: 49  CGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFAS 108
              VWYWVKL      +G LA V + WVGP+F+DKE+IPIINWET TFSTPVL VLVFAS
Sbjct: 57  RAAVWYWVKLVVLFLFLGFLAVVVLVWVGPYFIDKEIIPIINWETETFSTPVLTVLVFAS 116

Query: 109 VALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKY 168
           VA+FPTLLLPS+PSMWVAGMTFGYGFGFLLI+SA A+G+SLP+ IG  F H+I+GWLEKY
Sbjct: 117 VAIFPTLLLPSTPSMWVAGMTFGYGFGFLLIISAAAIGVSLPFVIGKLFHHKIEGWLEKY 176

Query: 169 PKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPE 228
           PKKA+ILR+AG G+WFHQFR VA IRISPFPY+I+NYCAVA +VKYGPY +GSLVGMVPE
Sbjct: 177 PKKASILRSAGGGSWFHQFRAVAFIRISPFPYLIFNYCAVAINVKYGPYIVGSLVGMVPE 236

Query: 229 IFVTIYT 235
           IFV IYT
Sbjct: 237 IFVAIYT 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476997|ref|XP_003608784.1| TVP38/TMEM64 family membrane protein slr0305 [Medicago truncatula] gi|355509839|gb|AES90981.1| TVP38/TMEM64 family membrane protein slr0305 [Medicago truncatula]

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 153/239 (64%), Positives = 187/239 (78%), Gaps = 16/239 (6%)

Query: 8   EVVPELTLRIDIDENNNNNKGDYLKLREYEEG-----------EPGSPRRWSCGKVWYWV 56
           EVV ++T+ I+ D   ++NKGDY+KL    +            E   P R S   VWYWV
Sbjct: 20  EVVSDVTITIEAD---DDNKGDYIKLIPGSDECLPLTAVEMVEECSLPSRRSV--VWYWV 74

Query: 57  KLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLL 116
           K+     S+G LA   +KWVGP+ +DKEVIPIINWET TFS PVL +L+FASVA+FPT+L
Sbjct: 75  KMVLLFLSLGFLAVAVLKWVGPYLIDKEVIPIINWETETFSPPVLTILLFASVAIFPTIL 134

Query: 117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILR 176
           LPS+PSMWVAG+T GYGFGFLLI++A A+G+SLP+ IGS F H+I+GWLEKYPKKA+IL+
Sbjct: 135 LPSTPSMWVAGVTLGYGFGFLLIITAAAIGVSLPFIIGSIFHHKIEGWLEKYPKKASILK 194

Query: 177 AAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235
           +AG GNWFHQFR VALIRISPFPY+++NYCAVAT+VKYGPY +GSLVGMVPEIFV IYT
Sbjct: 195 SAGAGNWFHQFRAVALIRISPFPYMVFNYCAVATNVKYGPYIIGSLVGMVPEIFVAIYT 253

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221330|ref|NP_172707.1| SNARE associated Golgi protein family [Arabidopsis thaliana] gi|34222066|gb|AAQ62869.1| At1g12450 [Arabidopsis thaliana] gi|62320872|dbj|BAD93843.1| hypothetical protein [Arabidopsis thaliana] gi|332190763|gb|AEE28884.1| SNARE associated Golgi protein family [Arabidopsis thaliana]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 156/243 (64%), Positives = 185/243 (76%), Gaps = 12/243 (4%)

Query: 1   MTYYED-DEVVPELTLRIDIDENNNNNKGDYLKLR----EYEEGEPGSPRRWSCGKV--- 52
           MTY    D  VPEL LR++ D +N    GDYLKLR    E +EG      R   G V   
Sbjct: 1   MTYSNGVDGTVPELKLRVEEDSDN----GDYLKLRGGSNEEDEGSSAESSRCPIGSVTSV 56

Query: 53  WYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALF 112
           W+WVKL   +  +G LA V IKWVGPF ++KE+IP INW   TFS PVL +L+FASVALF
Sbjct: 57  WFWVKLISLVVCLGSLAFVIIKWVGPFLIEKELIPFINWVRNTFSIPVLGLLLFASVALF 116

Query: 113 PTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKA 172
           P++LLPSSPSMW+AG+TFGYG GFLLI+SA ++G++LP+ IG  FLH++Q WL+KYPKKA
Sbjct: 117 PSILLPSSPSMWMAGLTFGYGKGFLLILSAASIGVTLPFLIGHLFLHKMQEWLKKYPKKA 176

Query: 173 AILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVT 232
           AILRAAGEG WFHQF+ V LIR+SPFPYIIYNYCA+AT V YGPY LGSLVGMVPEIFV+
Sbjct: 177 AILRAAGEGTWFHQFQAVTLIRVSPFPYIIYNYCALATGVHYGPYILGSLVGMVPEIFVS 236

Query: 233 IYT 235
           IYT
Sbjct: 237 IYT 239

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497185|ref|XP_003517443.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Glycine max]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/235 (63%), Positives = 185/235 (78%), Gaps = 1/235 (0%)

Query: 1   MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREYEEGEPGSPRRWSCGKVWYWVKLAF 60
           MTY+E+D +  +   R+   E N++  G+Y+KL    + E     R    ++WYWVKL  
Sbjct: 1   MTYFEEDAINDDGD-RVRDVERNHDGGGEYVKLVWDPQPEAVPTHRGGSSRLWYWVKLVL 59

Query: 61  FLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSS 120
               +GLLA V  +WV P F++K +IPII WET TFS+PVLAVL+FAS+ALFPTL+LPSS
Sbjct: 60  CFLCLGLLALVAFEWVAPLFIEKVIIPIIKWETNTFSSPVLAVLLFASIALFPTLILPSS 119

Query: 121 PSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGE 180
           PSMWVAG+ FGYGFGFLLI+SA AVG+SLP+ IGS F  +I+GWLEKYPK+A++LR+AG 
Sbjct: 120 PSMWVAGLKFGYGFGFLLIISAAAVGVSLPFLIGSIFHSKIEGWLEKYPKRASVLRSAGG 179

Query: 181 GNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235
           GNWFHQFR VALIR+SPFPYII+NYCAVAT+VKY PY LGSLVGMVPEIFV+IYT
Sbjct: 180 GNWFHQFRAVALIRVSPFPYIIFNYCAVATNVKYWPYLLGSLVGMVPEIFVSIYT 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803836|ref|XP_002869802.1| hypothetical protein ARALYDRAFT_492585 [Arabidopsis lyrata subsp. lyrata] gi|297315638|gb|EFH46061.1| hypothetical protein ARALYDRAFT_492585 [Arabidopsis lyrata subsp. lyrata]

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 146/237 (61%), Positives = 182/237 (76%), Gaps = 3/237 (1%)

Query: 1   MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLRE--YEEGEPGSPRRWSCGKVWYWVKL 58
           MT  ED++ V EL +R++ D++N+  KG Y+KL E   ++ E     +    + W+WVKL
Sbjct: 1   MTLPEDEKPVLELRVRVE-DDDNDEKKGPYVKLSEGLKKKQEEEEEEKIDSSRFWFWVKL 59

Query: 59  AFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLP 118
           +     +  LA V   W+GP  MDKE+IP+I WE  TF+ PV  +LVFASVA+FPT+LLP
Sbjct: 60  SLLFAFLATLAVVGYIWIGPLIMDKELIPLIQWEIRTFTHPVCGLLVFASVAIFPTILLP 119

Query: 119 SSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAA 178
           S+PSMW+AGMTFGYG+GFLLI+SA AVG+SLPYFIG  F H+IQGWLE+YP +AA+LRAA
Sbjct: 120 STPSMWIAGMTFGYGYGFLLIISAAAVGVSLPYFIGQLFCHKIQGWLERYPDQAAVLRAA 179

Query: 179 GEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235
           GEGNW HQFR V LIRISPFPYI+YNYC+VAT VKYGPY  GSL+GMVPE+FV IYT
Sbjct: 180 GEGNWLHQFRLVTLIRISPFPYILYNYCSVATRVKYGPYITGSLLGMVPEVFVAIYT 236

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2034710	303	AT1G12450 "AT1G12450" [Arabido	0.978	0.762	0.567	2.1e-68
TAIR|locus:2132669	296	AT4G22850 "AT4G22850" [Arabido	0.978	0.780	0.533	9.4e-66
TAIR|locus:2118096	306	AT4G12000 [Arabidopsis thalian	0.987	0.761	0.506	7.9e-62
TAIR|locus:2056246	320	AT2G02370 "AT2G02370" [Arabido	0.779	0.575	0.451	2.2e-43
TAIR|locus:2017769	344	AT1G22850 "AT1G22850" [Arabido	0.415	0.284	0.365	6e-08
TAIR|locus:2014530	274	AT1G03260 [Arabidopsis thalian	0.440	0.379	0.272	0.00022
TAIR|locus:2179654	280	AT5G19070 [Arabidopsis thalian	0.440	0.371	0.254	0.00091
UNIPROTKB|Q6YI46	380	TMEM64 "Transmembrane protein	0.453	0.281	0.269	0.00094
MGI|MGI:2140359	381	Tmem64 "transmembrane protein	0.453	0.280	0.269	0.00094

TAIR|locus:2034710 AT1G12450 "AT1G12450" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 138/243 (56%), Positives = 163/243 (67%)

Query:     1 MTYYED-DEVVPELTLRIDIDENNNNNKGDYLKLR----EYEEGEPGSPRRWSCGKV--- 52
             MTY    D  VPEL LR++ D +N    GDYLKLR    E +EG      R   G V   
Sbjct:     1 MTYSNGVDGTVPELKLRVEEDSDN----GDYLKLRGGSNEEDEGSSAESSRCPIGSVTSV 56

Query:    53 WYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPXXXXXXXXXXXXX 112
             W+WVKL   +  +G LA V IKWVGPF ++KE+IP INW   TFS P             
Sbjct:    57 WFWVKLISLVVCLGSLAFVIIKWVGPFLIEKELIPFINWVRNTFSIPVLGLLLFASVALF 116

Query:   113 XXXXXXXXXXMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKA 172
                       MW+AG+TFGYG GFLLI+SA ++G++LP+ IG  FLH++Q WL+KYPKKA
Sbjct:   117 PSILLPSSPSMWMAGLTFGYGKGFLLILSAASIGVTLPFLIGHLFLHKMQEWLKKYPKKA 176

Query:   173 AILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVT 232
             AILRAAGEG WFHQF+ V LIR+SPFPYIIYNYCA+AT V YGPY LGSLVGMVPEIFV+
Sbjct:   177 AILRAAGEGTWFHQFQAVTLIRVSPFPYIIYNYCALATGVHYGPYILGSLVGMVPEIFVS 236

Query:   233 IYT 235
             IYT
Sbjct:   237 IYT 239

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132669 AT4G22850 "AT4G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 128/240 (53%), Positives = 158/240 (65%)

Query:     1 MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREY-EEGEPGSPRR----WSCGKVWYW 55
             MT  ED++ V EL +R++ D+     KG Y+KL E  E+G+     +        + W+W
Sbjct:     1 MTVTEDEKPVLELLVRVEDDDE----KGPYVKLSEVLEKGQESEQEKEEEKTDSSRFWFW 56

Query:    56 VKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPXXXXXXXXXXXXXXXX 115
             VKL+     +  LA V   W+GP  MDKE+IP+I WE  TF+ P                
Sbjct:    57 VKLSLLFAFLAALAVVGYIWIGPLIMDKELIPLIQWEIRTFTHPVCGLLVFASVAIFPTI 116

Query:   116 XXXXXXXMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAIL 175
                    MW+AGMTFGYG+GFLLI+SA AVG+SLPYFIG  F H+IQGWLE+YP +AA+L
Sbjct:   117 LLPSTPSMWIAGMTFGYGYGFLLIISAAAVGVSLPYFIGQLFCHKIQGWLERYPDQAAVL 176

Query:   176 RAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235
             RAAGEGNW HQF  V LIRISPFPYI+YNYC+VAT VKYGPY  GSL+GMVPE+FV IYT
Sbjct:   177 RAAGEGNWLHQFLLVTLIRISPFPYILYNYCSVATRVKYGPYITGSLLGMVPEVFVAIYT 236

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118096 AT4G12000 [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 125/247 (50%), Positives = 158/247 (63%)

Query:     1 MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKL--------REYEEGEPGSPRRWS-CGK 51
             MTY+E+D+ V E   R+ ++E+  +  G Y+KL        +E E+    SP   S CG+
Sbjct:     1 MTYHEEDDTVSEF--RVRVEEDGVDKLGHYVKLTEDFEVHRQETEQESSSSPSSSSSCGQ 58

Query:    52 ---VWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPXXXXXXXXX 108
                VW+W+KL  F T +  L     KW+ P  MDKE+IP+I WE  TF+ P         
Sbjct:    59 KRSVWFWIKLGLFFTFLTALGLAGYKWLYPLIMDKELIPLIKWEMETFTHPVCGILVFAS 118

Query:   109 XXXXXXXXXXXXXXMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKY 168
                           MWVAG+TFGY +G LL + AVA+G+SLPYFI   FL++IQGWLE+Y
Sbjct:   119 VSLFPVILIPTTPSMWVAGITFGYFYGLLLTLPAVAIGVSLPYFISYLFLNKIQGWLERY 178

Query:   169 PKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPE 228
             P +AA+LRAAG G+WFHQFR V LIRISPFP+ +YNYCAVAT VK+GPY  GSLVGM PE
Sbjct:   179 PDQAAMLRAAGGGSWFHQFRAVTLIRISPFPFAVYNYCAVATRVKFGPYMAGSLVGMAPE 238

Query:   229 IFVTIYT 235
             IFV IYT
Sbjct:   239 IFVAIYT 245

GO:0005886 "plasma membrane" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2056246 AT2G02370 "AT2G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 84/186 (45%), Positives = 113/186 (60%)

Query:    51 KVWYWVKLAFFLTSVGLLAA-VFIKWVGPFFMDKEVIPIINWETTTFSTPXXXXXXXXXX 109
             K  +W+K A  + +V LL   VF KW  PF   K +IPI+ WE T F  P          
Sbjct:    51 KFMWWLK-ALGICAVALLLTLVFGKWGVPFVFQKVLIPILQWEATAFGRPMLAIVLVVSL 109

Query:   110 XXXXXXXXXXXXXMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYP 169
                          MW+AGM FGYG GF++IM    +G+ LPY IG  F  R+  WL+++P
Sbjct:   110 ALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYLIGLMFRDRLHQWLKRWP 169

Query:   170 KKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEI 229
             ++AA+LR A EG+WFHQFR VA+ R+SPFPY I+NY  V T +++ PYF GS+ GM+PE 
Sbjct:   170 RQAAVLRLAAEGSWFHQFRVVAIFRVSPFPYTIFNYAIVVTSMRFWPYFFGSIAGMIPEA 229

Query:   230 FVTIYT 235
             F+ IY+
Sbjct:   230 FIYIYS 235

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2017769 AT1G22850 "AT1G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 38/104 (36%), Positives = 56/104 (53%)

Query:   126 AGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLH-RIQGWLEKYPKKAAILRAAGEGNWF 184
             AG+ FG   G +++  +  +  S+ + I  +F   RI   +E   K  AI +A GE    
Sbjct:   177 AGLLFGPLIGTIIVSISGTMAASVAFLIARYFARERILKLVEDNKKFLAIDKAIGENG-- 234

Query:   185 HQFRTVALIRISPF-PYIIYNYCAVATHVKYGPYFLGSLVGMVP 227
               FR V L+R+SP  P+ + NY    T VK+ PY LGS +GM+P
Sbjct:   235 --FRVVTLLRLSPLLPFSLGNYLYGLTSVKFVPYVLGSWLGMLP 276

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2014530 AT1G03260 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 0.00022, P = 0.00022
 Identities = 30/110 (27%), Positives = 50/110 (45%)

Query:   127 GMTFGYGFGFLLIMSAVAVGISLPYFIGSHF-LHRIQGWLEKYPKKAAILRAAGEGNWFH 185
             G  FG   GF+       +G +  + +G       +   ++ YPK  A+  A  +     
Sbjct:    77 GYLFGLPVGFVADSLGATLGATAAFLLGRTIGKSYVTSKIKHYPKFQAVSVAIQKSG--- 133

Query:   186 QFRTVALIRISPF-PYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234
              F+ V L+R+ P  P+ + NY    T V+ G Y L + +GM+P  F  +Y
Sbjct:   134 -FKIVLLLRVVPILPFNMLNYLLSVTPVRLGEYMLATWLGMMPITFALVY 182

GO:0005886 "plasma membrane" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2179654 AT5G19070 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 0.00091, P = 0.00091
 Identities = 28/110 (25%), Positives = 49/110 (44%)

Query:   127 GMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAAILRAAGEGNWFH 185
             G  FG   GF+       +G    + +G       +   L+ YP+  ++  A  +     
Sbjct:    75 GYLFGLPIGFVADSVGATLGSGAAFLLGRTIGKPFVVAKLKDYPQFQSVALAIEKSG--- 131

Query:   186 QFRTVALIRISPF-PYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234
              F+   L+R++P  P+ + NY    T ++ GPY L S +GM+P     +Y
Sbjct:   132 -FKICLLLRLAPLLPFSMLNYLLSVTPIRLGPYLLSSWLGMMPITLALVY 180

GO:0005886 "plasma membrane" evidence=ISM

GO:0015824 "proline transport" evidence=RCA

UNIPROTKB|Q6YI46 TMEM64 "Transmembrane protein 64" [Homo sapiens (taxid:9606)]

 Score = 109 (43.4 bits), Expect = 0.00094, P = 0.00094
 Identities = 31/115 (26%), Positives = 54/115 (46%)

Query:   125 VAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRI-QGW----LEKYPKKAAILRAAG 179
             V  +  GY +GF+L M  + VG+ +  FI      R+   W    ++   K +A++R   
Sbjct:   180 VLNVAAGYLYGFVLGMGLMMVGVLIGTFIAHVVCKRLLTAWVAARIQSSEKLSAVIRVVE 239

Query:   180 EGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234
              G+     + VAL R++P P+ + N     T +    Y + S VG++P   +  Y
Sbjct:   240 GGSGL---KVVALARLTPIPFGLQNAVFSITDLSLPNYLMASSVGLLPTQLLNSY 291

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2140359 Tmem64 "transmembrane protein 64" [Mus musculus (taxid:10090)]

 Score = 109 (43.4 bits), Expect = 0.00094, P = 0.00094
 Identities = 31/115 (26%), Positives = 53/115 (46%)

Query:   125 VAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRI-QGW----LEKYPKKAAILRAAG 179
             V  +  GY +GF+L M  + VG+ +  FI      R+   W    ++   K +A++R   
Sbjct:   181 VLNVAAGYLYGFVLGMGLMVVGVLIGTFIAHVVCKRLLTAWVAARIQNSDKLSAVIRVVE 240

Query:   180 EGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234
              G+     + VAL R++P P+ + N     T V    Y + S  G++P   +  Y
Sbjct:   241 GGSGL---KVVALARLTPIPFGLQNAVFSITDVPLPSYLMASSAGLLPTQLLNSY 292


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.143   0.476    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       213   0.00084  112 3  11 22  0.45    32
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  209 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.58u 0.09s 19.67t   Elapsed:  00:00:01
  Total cpu time:  19.58u 0.10s 19.68t   Elapsed:  00:00:01
  Start:  Fri May 10 22:13:54 2013   End:  Fri May 10 22:13:55 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
pfam09335	123	pfam09335, SNARE_assoc, SNARE associated Golgi pro	6e-14
COG0398	223	COG0398, COG0398, Uncharacterized conserved protei	1e-08

>gnl|CDD|220186 pfam09335, SNARE_assoc, SNARE associated Golgi protein

 Score = 65.8 bits (161), Expect = 6e-14
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILR 176
           LP +  +  AG  FG   GFL+ +    +G  L Y +G +   R         K    L+
Sbjct: 1   LPGTVLLIAAGALFGPWLGFLVALLGALLGSLLAYLLGRYLGRRALRRRLLKEKAFQRLQ 60

Query: 177 AAGEGNWFHQFRTVALIRISPF-PYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234
                   + F+ + L+R+ P  P  + NY A  + V +  + LG+ +G++P   + +Y
Sbjct: 61  RVERLVERYGFKALLLLRLLPGVPRDLVNYVAGLSRVSFRRFLLGTFLGILPWALLYVY 119

This is a family of SNARE associated Golgi proteins. The yeast member of this family localises with the t-SNARE Tlg2. Length = 123

>gnl|CDD|223475 COG0398, COG0398, Uncharacterized conserved protein [Function unknown]

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 34/173 (19%), Positives = 71/173 (41%), Gaps = 9/173 (5%)

Query: 65  VGLLAAVFIKWVGPFFMDKEVIPIINW-ETTTFSTPVLAVLVFASVALFPTLLLPSSPSM 123
           + L   + I ++G   +  +   +  W +      P++  ++   VA  P  ++P S   
Sbjct: 15  LFLGVIIGIIYLGLLVLLLDPETLREWIQAYGALGPLVFFILLYLVATLP--IIPGSILT 72

Query: 124 WVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLH-RIQGWLEKYPKKAAILRAAGEGN 182
              G+ FG   GFL  +     G +L + +  +     +  ++    K   I        
Sbjct: 73  LAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWVLKFVGGKEKVQRIDAGLERNG 132

Query: 183 WFHQFRTVALIRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234
           ++     + L+R+ P FP+ + NY A  T + +  + + +L+G +P   V  Y
Sbjct: 133 FW----AILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTY 181

Length = 223

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
COG0398	223	Uncharacterized conserved protein [Function unknow	99.96
PF09335	123	SNARE_assoc: SNARE associated Golgi protein; Inter	99.87
COG0586	208	DedA Uncharacterized membrane-associated protein [	99.77
PRK10847	219	hypothetical protein; Provisional	99.73
KOG3140	275	consensus Predicted membrane protein [Function unk	99.39
COG1238	161	Predicted membrane protein [Function unknown]	99.35
PF06695	121	Sm_multidrug_ex: Putative small multi-drug export	95.93
PRK01844	72	hypothetical protein; Provisional	87.24
TIGR02359	160	thiW thiW protein. Levels of thiamine pyrophosphat	82.95
PRK00523	72	hypothetical protein; Provisional	82.42

>COG0398 Uncharacterized conserved protein [Function unknown]

Probab=99.96  E-value=2.6e-28  Score=211.39  Aligned_cols=148  Identities=21%  Similarity=0.403  Sum_probs=130.4

Q ss_pred             ChhhHHHHHHhh-hccchhHHHH-HHHHHHhhhhccccCChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612           81 MDKEVIPIINWE-TTTFSTPVLA-VLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFL  158 (236)
Q Consensus        81 ~~~~l~~l~~w~-~~~~~~p~~~-ill~~~~~~~~~~~iP~~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~y~igR~~g  158 (236)
                      ...+.+.+++|+ +.+.++|+.+ ++.+. .  ....++|++++++++|.+||+++|++++++|+++|++++|+++|++|
T Consensus        31 ~~~~~~~l~~~i~~~g~~~pl~~fil~~l-~--~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~g  107 (223)
T COG0398          31 LLLDPETLREWIQAYGALGPLVFFILLYL-V--ATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLG  107 (223)
T ss_pred             hccCHHHHHHHHHHcCchHHHHHHHHHHH-H--HHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344566678996 6788899884 44444 3  33456899999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHhhchhHHHHHHHHhcCCcchhHHHhHHhcccc-cchhHHHHhHhhcCCCchhHHHHHHHhHHHHHHHhHhc
Q 026612          159 HR-IQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT  235 (236)
Q Consensus       159 ~~-i~~~l~~~~~~~~~~~~~~~~~~~~g~~~v~l~RliP-~P~~~vny~aG~t~i~~~~F~l~s~iG~lP~~~~~vy~  235 (236)
                      |+ .++..+++++.+++++..++    ||++.+++.|++| +|++++||+||++++++++|.++|.+|++|++++|+|.
T Consensus       108 r~~~~~~~~~~~~~~~~~~~~~~----~g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~  182 (223)
T COG0398         108 RDWVLKFVGGKEKVQRIDAGLER----NGFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYL  182 (223)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHh----CChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHH
Confidence            98 88888888888999988886    4899999999999 79999999999999999999999999999999999884

>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins

Probab=99.87  E-value=2.8e-21  Score=150.68  Aligned_cols=115  Identities=30%  Similarity=0.460  Sum_probs=102.3

Q ss_pred             CChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhchhHHH---HHHHHhcCCcchhHHHhHH
Q 026612          117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAA---ILRAAGEGNWFHQFRTVAL  192 (236)
Q Consensus       117 iP~~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~y~igR~~g~~-i~~~l~~~~~~~~---~~~~~~~~~~~~g~~~v~l  192 (236)
                      +|++++++++|++||++.|++++.+|+++|+.++|++||+++++ .+++..++++.++   .++..+    +||...+++
T Consensus         1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~l~~   76 (123)
T PF09335_consen    1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQ----KYGFWVLFL   76 (123)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHh----hhhHHHHHH
Confidence            69999999999999999999999999999999999999999965 7776665555555   444443    468999999


Q ss_pred             hcccc-cchhHHHHhHhhcCCCchhHHHHHHHhHHHHHHHhHhc
Q 026612          193 IRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT  235 (236)
Q Consensus       193 ~RliP-~P~~~vny~aG~t~i~~~~F~l~s~iG~lP~~~~~vy~  235 (236)
                      .|++| +|++++|+++|++++|+++|+.++++|.+|++.++++.
T Consensus        77 ~~~~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~  120 (123)
T PF09335_consen   77 SRFIPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLL  120 (123)
T ss_pred             HHHHHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 69999999999999999999999999999999999874

The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].

>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]

Probab=99.77  E-value=5.4e-18  Score=145.53  Aligned_cols=136  Identities=16%  Similarity=0.172  Sum_probs=112.4

Q ss_pred             chhHHHHHHHHHHhhhhccccCChHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh---
Q 026612           96 FSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMT-----FGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLE---  166 (236)
Q Consensus        96 ~~~p~~~ill~~~~~~~~~~~iP~~~l~~~aG~l-----FG~~~G~~~~~~G~~lGa~l~y~igR~~g~~-i~~~l~---  166 (236)
                      +....+++..+.....+...++|++++++++|++     ++++...+.+.+|+++|+.++|++||++|++ .+++.+   
T Consensus        15 ~~~~~~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~   94 (208)
T COG0586          15 LGYLGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRL   94 (208)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhcc
Confidence            3445666666665444445679999999999998     4567889999999999999999999999988 666554   


Q ss_pred             -hchhHHHHHHHHhcCCcchhHHHhHHhcccccchhHHHHhHhhcCCCchhHHHHHHHhHHHHHHHhHhc
Q 026612          167 -KYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT  235 (236)
Q Consensus       167 -~~~~~~~~~~~~~~~~~~~g~~~v~l~RliP~P~~~vny~aG~t~i~~~~F~l~s~iG~lP~~~~~vy~  235 (236)
                       +.++.++.++..+    |||.++++++|++|.-+++++..||++|||+++|++.+++|.+.|..++++.
T Consensus        95 ~~~~~l~~a~~~f~----r~G~~~vf~~RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~l  160 (208)
T COG0586          95 LKRKKLDKAELLFE----RHGLFAIFLGRFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLL  160 (208)
T ss_pred             CCHHHHHHHHHHHH----HcCchhhhhhcccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence             2334555556665    4799999999999999999999999999999999999999999999998763

>PRK10847 hypothetical protein; Provisional

Probab=99.73  E-value=2.5e-17  Score=142.37  Aligned_cols=136  Identities=21%  Similarity=0.269  Sum_probs=106.5

Q ss_pred             cchhH-HHHHHHHHHhhhhccccCChHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 026612           95 TFSTP-VLAVLVFASVALFPTLLLPSSPSMWVAGMTFG-------YGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWL  165 (236)
Q Consensus        95 ~~~~p-~~~ill~~~~~~~~~~~iP~~~l~~~aG~lFG-------~~~G~~~~~~G~~lGa~l~y~igR~~g~~-i~~~l  165 (236)
                      +.+++ +++++.+....+....++|++.+.+++|++.+       .+..++.+++|+++|+.++|++||++|++ +.++.
T Consensus        26 g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~l~~~~  105 (219)
T PRK10847         26 GVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGEKLFSNPN  105 (219)
T ss_pred             hHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhccc
Confidence            44444 35555554432233356899999999998865       45678899999999999999999999988 54332


Q ss_pred             hh---chhHHHHHHHHhcCCcchhHHHhHHhcccccchhHHHHhHhhcCCCchhHHHHHHHhHHHHHHHhHh
Q 026612          166 EK---YPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY  234 (236)
Q Consensus       166 ~~---~~~~~~~~~~~~~~~~~~g~~~v~l~RliP~P~~~vny~aG~t~i~~~~F~l~s~iG~lP~~~~~vy  234 (236)
                      ++   .++.++.++.++|    ||.+.+++.|++|+-+++++++||+++||+++|++.+.+|.+++..++++
T Consensus       106 ~~~~~~~~l~~~~~~~~r----~G~~~v~i~RfiP~~R~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~  173 (219)
T PRK10847        106 SKIFRRSYLDKTHQFYEK----HGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTY  173 (219)
T ss_pred             cccCCHHHHHHHHHHHHH----cCCEEEEeeCCccchHhHHHHHhHhcCCChHHHHHHHHHHHHHHHHHHHH
Confidence            22   2234566666654    68899999999998779999999999999999999999999999999876

>KOG3140 consensus Predicted membrane protein [Function unknown]

Probab=99.39  E-value=7.5e-13  Score=117.73  Aligned_cols=125  Identities=22%  Similarity=0.358  Sum_probs=103.5

Q ss_pred             HHhhhhccccCCh-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhchhHHHHHHHHhcCCcc
Q 026612          107 ASVALFPTLLLPS-SPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAAILRAAGEGNWF  184 (236)
Q Consensus       107 ~~~~~~~~~~iP~-~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~y~igR~~g~~-i~~~l~~~~~~~~~~~~~~~~~~~  184 (236)
                      +.+.....+.+|+ ..+.+.+|++||.+.|.+.+...+++|++++|++++.++|. +.++...+.+  .+....+++ ..
T Consensus       102 ~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~--~~~~~~~~~-~~  178 (275)
T KOG3140|consen  102 AAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIA--FLQQDVELN-RN  178 (275)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHH--HHHHHHHhc-cc
Confidence            3445667788995 66899999999999999999999999999999999999998 8887765422  333333321 12


Q ss_pred             hhHHHhHHhccccc-chhHHHHhHhhcCCCchhHHHHHHHhHHHHHHHhHh
Q 026612          185 HQFRTVALIRISPF-PYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY  234 (236)
Q Consensus       185 ~g~~~v~l~RliP~-P~~~vny~aG~t~i~~~~F~l~s~iG~lP~~~~~vy  234 (236)
                      +-+..+++.|++|+ |+++.|+++++.++++..|++++++|++|..++++-
T Consensus       179 ~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~  229 (275)
T KOG3140|consen  179 SLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVR  229 (275)
T ss_pred             chhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhh
Confidence            34778999999995 999999999999999999999999999999998864

>COG1238 Predicted membrane protein [Function unknown]

Probab=99.35  E-value=2e-11  Score=100.89  Aligned_cols=138  Identities=14%  Similarity=0.176  Sum_probs=101.8

Q ss_pred             HHhhhccchhHHHHHHHHHHhhhhccccCChHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 026612           89 INWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMT-FGYGFGFLLIMSAVAVGISLPYFIGSHFLHRI-QGWLE  166 (236)
Q Consensus        89 ~~w~~~~~~~p~~~ill~~~~~~~~~~~iP~~~l~~~aG~l-FG~~~G~~~~~~G~~lGa~l~y~igR~~g~~i-~~~l~  166 (236)
                      .++..+..+...+|+..|++..++|   +|++++....-.. ..++.-..++.+|+++|+.++|++||+.++.+ +++..
T Consensus        10 ~~~~~~~~a~~~Lf~vaF~eat~lP---~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~   86 (161)
T COG1238          10 LSLMSQAYAYAGLFIVAFLEATLLP---VPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFP   86 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhc
Confidence            3443333445567777777655554   6887754333332 67788899999999999999999999999874 43332


Q ss_pred             -hchhHHHHHH-HHhcCCcchhHHHhHHhcccccchhHHHHhHhhcCCCchhHHHHHHHhHHHHHHHhHh
Q 026612          167 -KYPKKAAILR-AAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY  234 (236)
Q Consensus       167 -~~~~~~~~~~-~~~~~~~~~g~~~v~l~RliP~P~~~vny~aG~t~i~~~~F~l~s~iG~lP~~~~~vy  234 (236)
                       +..+.++..+ ..+    |+|.+.+++.=+.|+| ++++.+||..++++++|+...++|..+.-++-+|
T Consensus        87 ~~~~~~~~~~~~~~~----ryg~~~ll~s~lp~ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~  151 (161)
T COG1238          87 GSEEALEKLQEKWYR----RYGVWTLLLSWLPPIG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAA  151 (161)
T ss_pred             chHHHHHHHHHHHHH----HHHHHHHHHHhccccc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence             2223333332 232    4689999999998899 9999999999999999999999999998887665

>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins

Probab=95.93  E-value=0.13  Score=40.62  Aligned_cols=96  Identities=16%  Similarity=0.116  Sum_probs=63.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhc-hhHHHHHHHHhcCCcchhHHHhHHhcccccc---
Q 026612          130 FGYGFGFLLIMSAVAVGISLPYFIGSHFLHR------IQGWLEKY-PKKAAILRAAGEGNWFHQFRTVALIRISPFP---  199 (236)
Q Consensus       130 FG~~~G~~~~~~G~~lGa~l~y~igR~~g~~------i~~~l~~~-~~~~~~~~~~~~~~~~~g~~~v~l~RliP~P---  199 (236)
                      ++++..++++.+|+++...+.++.-++.-+.      .++..++. ++.++-.+..+    |+|+..+++.=.+|+|   
T Consensus        14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~----kyg~~GL~lFVaIPlP~TG   89 (121)
T PF06695_consen   14 LPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIE----KYGFWGLALFVAIPLPGTG   89 (121)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHhCCCCcch
Confidence            3567888889999888776666655554332      22222111 01111122232    4688888888788887   


Q ss_pred             hhHHHHhHhhcCCCchhHHHHHHHhHHHHH
Q 026612          200 YIIYNYCAVATHVKYGPYFLGSLVGMVPEI  229 (236)
Q Consensus       200 ~~~vny~aG~t~i~~~~F~l~s~iG~lP~~  229 (236)
                      -+.-+.+|-+.+|+.++=+++..+|.+-..
T Consensus        90 ~wtgal~a~llg~~~~~~~~ai~~Gv~ia~  119 (121)
T PF06695_consen   90 AWTGALIASLLGMDKKKAFLAIFLGVLIAG  119 (121)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            566788999999999999999999987554

>PRK01844 hypothetical protein; Provisional

Probab=87.24  E-value=1.8  Score=31.09  Aligned_cols=29  Identities=24%  Similarity=0.556  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612          132 YGFGFLLIMSAVAVGISLPYFIGSHFLHR  160 (236)
Q Consensus       132 ~~~G~~~~~~G~~lGa~l~y~igR~~g~~  160 (236)
                      .|...++.+++..+|.+++|+++|+..++
T Consensus         3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k   31 (72)
T PRK01844          3 IWLGILVGVVALVAGVALGFFIARKYMMN   31 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556677889999999999999987654

>TIGR02359 thiW thiW protein

Probab=82.95  E-value=20  Score=29.73  Aligned_cols=33  Identities=12%  Similarity=0.066  Sum_probs=27.8

Q ss_pred             ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026612          118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLP  150 (236)
Q Consensus       118 P~~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~  150 (236)
                      ++...++++|++||||+|.+...+++.++....
T Consensus        33 ~~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~   65 (160)
T TIGR02359        33 VQHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG   65 (160)
T ss_pred             hhHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence            357788999999999999999888888877654

Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.

>PRK00523 hypothetical protein; Provisional

Probab=82.42  E-value=4.1  Score=29.32  Aligned_cols=27  Identities=19%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612          134 FGFLLIMSAVAVGISLPYFIGSHFLHR  160 (236)
Q Consensus       134 ~G~~~~~~G~~lGa~l~y~igR~~g~~  160 (236)
                      ..+++.+++..+|.+.+|+++|+..++
T Consensus         6 l~I~l~i~~li~G~~~Gffiark~~~k   32 (72)
T PRK00523          6 LALGLGIPLLIVGGIIGYFVSKKMFKK   32 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777889999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00