Citrus Sinensis ID: 026640

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MASCFRGGSGISSISSLPSLPHRTRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccccHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mascfrggsgississlpslphrtrlsvlpvkclssrqsrdsdsdsdlrttpspsstsgfspygwcagiggvgfLETTYLSYLKltnsdafcpiggascgdvlnsdyavvfgvplpfIGMFAYGLVAVLGLLLArksfpigineSYGRLILLGSSTSMAAASAYFLYILSTnfsgatcsYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTsyssiqplssr
Flexible Loop (DISEMBL)
mascfrggsgississlpslphrtrlsvlpvkclssrqsrdsdsdsdlrttpspsstsgfspygWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALStsyssiqplssr
Low Complexity Region (SEG)
MASCFRGgsgississlpslpHRTRLSVLPVKCLssrqsrdsdsdsdlrttpspsstsgfspYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYglvavlglllaRKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCltsallsfslffislkefsVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSR
Disordered region (IsUnstruct)
***********************************************************FSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALST***********
Disordered Region (DISOPRED)
***********************************************************FSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSY**I******
Disordered Region (DISEMBL)
**********ISSISSLPSLPHRTRLSVLPVKC*************************GFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTS**********
Disordered Region (DISPRO)
*********************************************************SGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQ*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASCFRGGSGISSISSLPSLPHRTRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
224133580	329	predicted protein [Populus trichocarpa]	0.731	0.522	0.726	1e-66
255579785	322	conserved hypothetical protein [Ricinus	0.821	0.599	0.680	3e-66
296088207	295	unnamed protein product [Vitis vinifera]	0.719	0.572	0.741	2e-65
359497224	298	PREDICTED: uncharacterized protein LOC10	0.719	0.567	0.741	2e-65
147782976	418	hypothetical protein VITISV_010788 [Viti	0.719	0.404	0.735	4e-65
449434454	405	PREDICTED: uncharacterized protein LOC10	0.723	0.419	0.660	2e-56
449491279	380	PREDICTED: uncharacterized LOC101218748	0.723	0.447	0.660	3e-56
350537081	243	anti-PCD protein-like [Solanum lycopersi	0.872	0.843	0.571	7e-56
21593770	375	unknown [Arabidopsis thaliana]	0.936	0.586	0.532	3e-52
18419647	376	NAD(P)H dehydrogenase (quinone)s [Arabid	0.936	0.585	0.532	3e-52

>gi|224133580|ref|XP_002327630.1| predicted protein [Populus trichocarpa] gi|222836715|gb|EEE75108.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/172 (72%), Positives = 147/172 (85%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFA 122
           Y WCAG+GGVGFLET YL++LKLTNSDAFCPIGG +CGDVL+SDYAVVFGVPLP IGM +
Sbjct: 36  YNWCAGLGGVGFLETAYLTFLKLTNSDAFCPIGGGNCGDVLSSDYAVVFGVPLPLIGMIS 95

Query: 123 YGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 182
           YGLVA LGL  + K FP GI ES GRL+LLG +TSMA AS YFLYILST FSG +C+YCL
Sbjct: 96  YGLVAALGLQWSGKKFPFGIEESNGRLLLLGCTTSMAVASGYFLYILSTKFSGTSCTYCL 155

Query: 183 TSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSS 234
            SA LSFSLFFI+LK+F +EEIQK LG+QLCIAS+V+ +L+TSY+++Q  SS
Sbjct: 156 LSAFLSFSLFFITLKDFGLEEIQKFLGLQLCIASVVIFSLNTSYATLQRASS 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579785|ref|XP_002530730.1| conserved hypothetical protein [Ricinus communis] gi|223529694|gb|EEF31636.1| conserved hypothetical protein [Ricinus communis]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 132/194 (68%), Positives = 159/194 (81%), Gaps = 1/194 (0%)

Query: 42  SDSDSDLRTTPSPSSTSGFSPYG-WCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCG 100
           SD++S+ +TT S S ++       WCA +G +GFLET YL+YLKLTNSDAFCPIGG SCG
Sbjct: 7   SDTESEPKTTTSSSFSNWSISTNSWCAALGSIGFLETAYLTYLKLTNSDAFCPIGGGSCG 66

Query: 101 DVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAA 160
           DVLNSDYAVVFGVPLP IG+ AYGLVA LGLLL  K+ P GI E+ GRLILL S+TSMAA
Sbjct: 67  DVLNSDYAVVFGVPLPVIGIVAYGLVASLGLLLPGKNLPFGIGEANGRLILLASTTSMAA 126

Query: 161 ASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVA 220
           AS YFLYILST FSG +CSYC+ SA LSF+LFFI+LK+F +++IQKVLG+Q+C+ASLVVA
Sbjct: 127 ASGYFLYILSTKFSGVSCSYCIFSAFLSFTLFFITLKDFGLQDIQKVLGLQICVASLVVA 186

Query: 221 ALSTSYSSIQPLSS 234
           AL+ SY +  P+SS
Sbjct: 187 ALNASYGTSPPISS 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088207|emb|CBI35722.3| unnamed protein product [Vitis vinifera]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 126/170 (74%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYG 124
           WCAG+GG+GFLETTYL+YLKLTNSDAFCPIGG +C DVLNSDYA VFGVPLP IGM AYG
Sbjct: 72  WCAGLGGLGFLETTYLTYLKLTNSDAFCPIGGGTCSDVLNSDYAAVFGVPLPLIGMAAYG 131

Query: 125 LVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTS 184
           LV +LGL LA K+ P GI E+ GRL+LLG++TSM+AASAYFLYILST F GA+CSYCL S
Sbjct: 132 LVTILGLQLAGKNVPFGIGETNGRLLLLGTTTSMSAASAYFLYILSTQFPGASCSYCLVS 191

Query: 185 ALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSS 234
           ALLSFSLFF SLK+F +++IQK + +QLCIASLVVA LSTSY+++ P+S+
Sbjct: 192 ALLSFSLFFTSLKDFQLKDIQKTVVLQLCIASLVVATLSTSYNTL-PVST 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497224|ref|XP_002271041.2| PREDICTED: uncharacterized protein LOC100264333 [Vitis vinifera]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 126/170 (74%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYG 124
           WCAG+GG+GFLETTYL+YLKLTNSDAFCPIGG +C DVLNSDYA VFGVPLP IGM AYG
Sbjct: 72  WCAGLGGLGFLETTYLTYLKLTNSDAFCPIGGGTCSDVLNSDYAAVFGVPLPLIGMAAYG 131

Query: 125 LVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTS 184
           LV +LGL LA K+ P GI E+ GRL+LLG++TSM+AASAYFLYILST F GA+CSYCL S
Sbjct: 132 LVTILGLQLAGKNVPFGIGETNGRLLLLGTTTSMSAASAYFLYILSTQFPGASCSYCLVS 191

Query: 185 ALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSS 234
           ALLSFSLFF SLK+F +++IQK + +QLCIASLVVA LSTSY+++ P+S+
Sbjct: 192 ALLSFSLFFTSLKDFQLKDIQKTVVLQLCIASLVVATLSTSYNTL-PVST 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782976|emb|CAN72958.1| hypothetical protein VITISV_010788 [Vitis vinifera]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYG 124
           WCAG+GG+GFLETTYL+YLKLTNSDAFCPIGG +C DVLNSDYA VFGVPLP IGM AYG
Sbjct: 129 WCAGLGGLGFLETTYLTYLKLTNSDAFCPIGGGTCSDVLNSDYAAVFGVPLPLIGMAAYG 188

Query: 125 LVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTS 184
           LV +L L LA K+ P GI E+ GRL+LLG++TSM+AASAYFLYILST F GA+CSYCL S
Sbjct: 189 LVTILSLQLAGKNVPFGIGETNGRLLLLGTTTSMSAASAYFLYILSTQFPGASCSYCLVS 248

Query: 185 ALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSS 234
           ALLSFSLFF SLK+F +++IQK + +QLCIASLVVA LSTSY+++ P+S+
Sbjct: 249 ALLSFSLFFTSLKDFQLKDIQKTVVLQLCIASLVVATLSTSYNTL-PVST 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434454|ref|XP_004135011.1| PREDICTED: uncharacterized protein LOC101218748 [Cucumis sativus]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/171 (66%), Positives = 135/171 (78%), Gaps = 1/171 (0%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFA 122
           Y  CA +GG+GF+ET YLSYLKLT+S AFCPIGG  C +VLNSDYA VFGVPLP IGM A
Sbjct: 116 YTLCAALGGIGFVETAYLSYLKLTDSAAFCPIGGGGCDNVLNSDYAAVFGVPLPLIGMVA 175

Query: 123 YGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 182
           YGLV  + L LA K  P GI+ES GRL+LLG++TSMAAASAYFLYIL+T FSG TCSYCL
Sbjct: 176 YGLVGAVSLQLAAKKLPFGIDESGGRLVLLGTTTSMAAASAYFLYILNTQFSGVTCSYCL 235

Query: 183 TSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLS 233
            SALLSFSLFF +LK+F ++E ++ L  Q+ +A +V   LSTSY S+ P+S
Sbjct: 236 VSALLSFSLFFATLKDFGLDESRRRLATQIIMAGIVFFTLSTSYGSL-PIS 285

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491279|ref|XP_004158848.1| PREDICTED: uncharacterized LOC101218748 [Cucumis sativus]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 113/171 (66%), Positives = 135/171 (78%), Gaps = 1/171 (0%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFA 122
           Y  CA +GG+GF+ET YLSYLKLT+S AFCPIGG  C +VLNSDYA VFGVPLP IGM A
Sbjct: 91  YTLCAALGGIGFVETAYLSYLKLTDSAAFCPIGGGGCDNVLNSDYAAVFGVPLPLIGMVA 150

Query: 123 YGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 182
           YGLV  + L LA K  P GI+ES GRL+LLG++TSMAAASAYFLYIL+T FSG TCSYCL
Sbjct: 151 YGLVGAVSLQLAAKKLPFGIDESGGRLVLLGTTTSMAAASAYFLYILNTQFSGVTCSYCL 210

Query: 183 TSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLS 233
            SALLSFSLFF +LK+F ++E ++ L  Q+ +A +V   LSTSY S+ P+S
Sbjct: 211 VSALLSFSLFFATLKDFGLDESRRRLATQIIMAGIVFFTLSTSYGSL-PIS 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537081|ref|NP_001234279.1| anti-PCD protein-like [Solanum lycopersicum] gi|76363955|gb|ABA41597.1| putative anti-PCD protein [Solanum lycopersicum]

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 120/210 (57%), Positives = 153/210 (72%), Gaps = 5/210 (2%)

Query: 12  SSISSLPSLPHRT--RLSVLPVKCLSSRQSRDSDSDSDLRTT-PSPSSTSGFSPYGWCAG 68
           +SISSL  L   +  RL +L V C SSRQ  D++++S+ +   P   + +G S Y WCA 
Sbjct: 25  NSISSLVQLKRDSVRRLLLLRVNC-SSRQVGDAETESESKVVLPDTPADTGISAYNWCAA 83

Query: 69  IGGVGFLETTYLSYLKLTNSDAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVA 127
           +GG+GFLET+YL++LKLTNS AFCP+G GASCGD+LNS Y+ VFGVPLP IGM AYG+VA
Sbjct: 84  LGGIGFLETSYLTFLKLTNSAAFCPVGDGASCGDILNSSYSAVFGVPLPLIGMVAYGVVA 143

Query: 128 VLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALL 187
           +LG+ L +KS P+G  E+ GRL+LLG++TSMAAASAYFLYILST F+G  C YCL S LL
Sbjct: 144 ILGIRLGQKSRPLGTGEANGRLVLLGTTTSMAAASAYFLYILSTKFTGEFCPYCLASVLL 203

Query: 188 SFSLFFISLKEFSVEEIQKVLGVQLCIASL 217
           SFSLF  S+K F +    K  G  +  +SL
Sbjct: 204 SFSLFISSMKGFGLSRGAKRCGYTVTYSSL 233

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593770|gb|AAM65737.1| unknown [Arabidopsis thaliana]

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 159/229 (69%), Gaps = 9/229 (3%)

Query: 16  SLPSLPHR-----TRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSP----YGWC 66
           S+ S P R      R   +P+KC SS      DS   L ++ S S++   +     Y W 
Sbjct: 23  SVTSYPRRFEVSDRRFPAIPIKCSSSEPENGEDSAPSLSSSSSSSTSEVSTSNSSTYNWY 82

Query: 67  AGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLV 126
            GIGG+G L+T YL+YLK+T SDAFCPIGG +CGDVLNSDYAVVFGVPLP IG   YG+V
Sbjct: 83  TGIGGIGMLDTAYLTYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVMYGVV 142

Query: 127 AVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSAL 186
             L   L   + P GI++S GR  L G +T+MA+ASAYFLYILST  SG++C YCL SA 
Sbjct: 143 TALSAELGEGNLPFGISKSNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCLVSAF 202

Query: 187 LSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSR 235
           LSFSLFF+S+K+  ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ QP+ SR
Sbjct: 203 LSFSLFFLSVKDVKLQEIQQVVGLQICLAIIVVASLTASYSTAQPIPSR 251

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18419647|ref|NP_567988.1| NAD(P)H dehydrogenase (quinone)s [Arabidopsis thaliana] gi|20466524|gb|AAM20579.1| putative protein [Arabidopsis thaliana] gi|22136450|gb|AAM91303.1| putative protein [Arabidopsis thaliana] gi|332661159|gb|AEE86559.1| NAD(P)H dehydrogenase (quinone)s [Arabidopsis thaliana]

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 159/229 (69%), Gaps = 9/229 (3%)

Query: 16  SLPSLPHR-----TRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSP----YGWC 66
           S+ S P R      R   +P+KC SS      DS   L ++ S S++   +     Y W 
Sbjct: 24  SVTSYPRRFEVSDRRFPAIPIKCSSSEPENGEDSAPSLSSSSSSSTSEVSTSNSSTYNWY 83

Query: 67  AGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLV 126
            GIGG+G L+T YL+YLK+T SDAFCPIGG +CGDVLNSDYAVVFGVPLP IG   YG+V
Sbjct: 84  TGIGGIGMLDTAYLTYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVMYGVV 143

Query: 127 AVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSAL 186
             L   L   + P GI++S GR  L G +T+MA+ASAYFLYILST  SG++C YCL SA 
Sbjct: 144 TALSAELGEGNLPFGISKSNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCLVSAF 203

Query: 187 LSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSR 235
           LSFSLFF+S+K+  ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ QP+ SR
Sbjct: 204 LSFSLFFLSVKDVKLQEIQQVVGLQICLAIIVVASLTASYSTAQPIPSR 252

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2128028	376	LTO1 "Lumen Thiol Oxidoreducta	0.897	0.561	0.441	8.8e-47

TAIR|locus:2128028 LTO1 "Lumen Thiol Oxidoreductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 95/215 (44%), Positives = 122/215 (56%)

Query:    25 RLSVLPVKCLXXX----XXXXXXXXXXXXXXXXXXXXXXXXXYGWCAGIGGVGFLETTYL 80
             R   +P+KC                                 Y W  GIGG+G L+T YL
Sbjct:    38 RFPAIPIKCSSSEPENGEDSAPSLSSSSSSSTSEVSTSNSSTYNWYTGIGGIGMLDTAYL 97

Query:    81 SYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYXXXXXXXXXXXRKSFPI 140
             +YLK+T SDAFCPIGG +CGDVLNSDYAVVFGVPLP IG   Y             + P 
Sbjct:    98 TYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVMYGVVTALSAELGEGNLPF 157

Query:   141 GINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCXXXXXXXXXXXXXXXXXXX 200
             GI++S GR  L G +T+MA+ASAYFLYILST  SG++C YC                   
Sbjct:   158 GISKSNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCLVSAFLSFSLFFLSVKDVK 217

Query:   201 VEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSR 235
             ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ QP+ SR
Sbjct:   218 LQEIQQVVGLQICLAIIVVASLTASYSTAQPIPSR 252


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.138   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       163   0.00084  107 3  11 22  0.45    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  580 (62 KB)
  Total size of DFA:  131 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.50u 0.17s 11.67t   Elapsed:  00:00:00
  Total cpu time:  11.50u 0.17s 11.67t   Elapsed:  00:00:00
  Start:  Fri May 10 23:33:48 2013   End:  Fri May 10 23:33:48 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003955 "NAD(P)H dehydrogenase (quinone) activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA;IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.1.4.1	LOW CONFIDENCE prediction!
3rd Layer	1.1.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
cd12916	133	cd12916, VKOR_1, Vitamin K epoxide reductase famil	7e-35
smart00756	142	smart00756, VKc, Family of likely enzymes that inc	7e-24
pfam07884	138	pfam07884, VKOR, Vitamin K epoxide reductase famil	3e-21
COG4243	156	COG4243, COG4243, Predicted membrane protein [Func	7e-17
cd10546	126	cd10546, VKOR, Vitamin K epoxide reductase (VKOR)	5e-11
cd12922	133	cd12922, VKOR_5, Vitamin K epoxide reductase famil	2e-08
cd12920	134	cd12920, VKOR_3, Vitamin K epoxide reductase famil	8e-07
PRK14889	143	PRK14889, PRK14889, VKOR family protein; Provision	4e-06
cd12918	126	cd12918, VKOR_arc, Vitamin K epoxide reductase fam	1e-05
cd12917	140	cd12917, VKOR_euk, Vitamin K epoxide reductase fam	0.002

>gnl|CDD|240599 cd12916, VKOR_1, Vitamin K epoxide reductase family in bacteria and plants

 Score =  120 bits (304), Expect = 7e-35
 Identities = 57/137 (41%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 62  PYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMF 121
                AG+  +G LET YL+Y+KLT S A CP GG  C  VLNS YA + G+PL   G  
Sbjct: 1   SRRLIAGLALIGLLETAYLTYVKLTGSSAVCPGGG-GCDTVLNSPYATLLGIPLSLFGFL 59

Query: 122 AYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYC 181
           AY  + VL +L           E +  L+L G +T+    SAY  Y+L+    GA C YC
Sbjct: 60  AYLAILVLAVLPLLLKSE--KLERWTWLLLFGLATAGVVFSAYLTYLLAF-VIGAFCPYC 116

Query: 182 LTSALLSFSLFFISLKE 198
           LTSA+LS  LF +++  
Sbjct: 117 LTSAVLSTLLFLLTILG 133

This family includes vitamin K epoxide reductase (VKOR) present in bacteria and plant. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some plant and bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Length = 133

>gnl|CDD|214805 smart00756, VKc, Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase

 Score = 92.8 bits (231), Expect = 7e-24
 Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 11/142 (7%)

Query: 61  SPYGWCAGIGGVGFLETTYLSYLKLTNS-----DAFCPIGGA-SCGDVLNSDYAVVFGVP 114
                   +G +G L + YL+Y KLT        A C I    SCG VL+S YA +FG+P
Sbjct: 3   WTRWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIP 62

Query: 115 LPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFS 174
           L  +G+ AY +V  L +L             +   +L   S + A  S Y +Y+L     
Sbjct: 63  LSLLGIAAYLVVLALAVLG----LLGVTLPRWTWRLLFLGSLAGAVFSVYLIYLLVFVI- 117

Query: 175 GATCSYCLTSALLSFSLFFISL 196
            A C YC+ SA++S SLF +  
Sbjct: 118 KALCLYCILSAVVSISLFILVT 139

Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases. Length = 142

>gnl|CDD|149126 pfam07884, VKOR, Vitamin K epoxide reductase family

 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 10/140 (7%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNS----DAFCPIGGA-SCGDVLNSDYAVVFGVPLPFIG 119
               +G +G L + YL+  K         A C I    SC  VLNS +A +FG+P   +G
Sbjct: 4   IILILGLIGLLASLYLTLEKYGLLEDPYRASCDINPVVSCSKVLNSPWATIFGIPNSLLG 63

Query: 120 MFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCS 179
           + AY +V +LG+L         ++      + LG S      S Y +YI      GA C 
Sbjct: 64  ILAYLVVLLLGVLGLAGVT---LSRWTWLGLFLG-SLVGVVFSVYLIYISVFVI-GALCL 118

Query: 180 YCLTSALLSFSLFFISLKEF 199
           YC+ SA +S  LF +S    
Sbjct: 119 YCILSAAVSIVLFILSTIGV 138

Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases. Length = 138

>gnl|CDD|226694 COG4243, COG4243, Predicted membrane protein [Function unknown]

 Score = 74.8 bits (184), Expect = 7e-17
 Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 9/133 (6%)

Query: 67  AGIGGVGFLETTYLSYLKLTNSDAFCPI---GGASCGDVLNSDYAVVFGVPLPFIGMFAY 123
             IGG+  L         L      C     G  SC  VL+S YA + G+PL  +G+  +
Sbjct: 19  GVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYF 78

Query: 124 GLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLT 183
             V +  LL                 +L+G S   +A   Y +Y L     GA C YC  
Sbjct: 79  TAVLIAALLGVAGVLE----RWTWIGLLVG-SLVGSAFVPYLIY-LELFVIGALCLYCTV 132

Query: 184 SALLSFSLFFISL 196
           + L    LF ++ 
Sbjct: 133 AHLSILLLFVLAT 145

Length = 156

>gnl|CDD|240598 cd10546, VKOR, Vitamin K epoxide reductase (VKOR) family

 Score = 58.2 bits (141), Expect = 5e-11
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 69  IGGVGFLETTYLSYLKLTNSD-AFCPIGGA-SCGDVLNSDYAVVFGVPLPFIGMFAYGLV 126
           +  +G L + YL+Y +LT    A C  G + SC  VL S ++ +FGVPL  +G   Y +V
Sbjct: 6   LAAIGLLVSLYLTYYELTEGAVAGCDAGPSSSCDLVLTSRWSRIFGVPLSLLGALYYLVV 65

Query: 127 AVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSAL 186
             L L                   L  ++ +   A+A+ +Y+      GA C YCL +  
Sbjct: 66  LGLLLS-------PPAGARLRWTALAAATFAGLGAAAWLIYLQLF-VLGAFCPYCLVAHA 117

Query: 187 LSFSLFF 193
              +L  
Sbjct: 118 AGLALLA 124

VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. This family includes enzymes that are present in vertebrates, Drosophila, plants, bacteria, and archaea. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some plant and bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Warfarin, a widely used oral anticoagulant used in medicine as well as rodenticides, inhibits the activity of VKOR, resulting in decreased levels of reduced vitamin K, which is required for the function of several clotting factors. However, anticoagulation effect of warfarin is significantly associated with polymorphism of certain genes, including VKORC1. Interestingly, in rodents, an adaptive trait appears to have evolved convergently by selection on new or standing genetic polymorphisms in VKORC1 as well as by adaptive introgressive hybridization between species, likely brought about by human-mediated dispersal. Length = 126

>gnl|CDD|240605 cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 98  SCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLG-LLLARKSFPIGINESYGRLILLGSST 156
           SCG V+ S  A +FG P P IG+ A+ +V  +G  LLA    P      +   +  G   
Sbjct: 41  SCGSVMQSWQASLFGFPNPLIGLAAFAVVITVGVALLAGARLP----RWFWVGLQAG--L 94

Query: 157 SMAAASAYFLYILSTNFSGATCSYCL 182
           +      ++L   S    GA C YC+
Sbjct: 95  AAGLVFVHWLIYQSLFVIGALCPYCM 120

This family includes vitamin K epoxide reductase (VKOR) mostly present in actinobacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Length = 133

>gnl|CDD|240603 cd12920, VKOR_3, Vitamin K epoxide reductase family in bacteria

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 11/134 (8%)

Query: 69  IGGVGFLETTYLSY-----LKLTNSDAFCPIGGA-SCGDVLNSDYAVVFGVPLPFIGMFA 122
           +  +G   +  L+Y     L      +FC I    +C  V  S Y+ + GVP+   G+ A
Sbjct: 6   LALIGLAFSGLLTYHHYGILTDGVGSSFCAINEVVNCDKVAQSPYSAIGGVPIALWGLLA 65

Query: 123 YGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 182
           YG +A L LL                L+LL        A      I S    GA C  C 
Sbjct: 66  YGFLAALFLLALISREDSERAAGLLFLVLL----VGLVADLVLGLI-SVTAIGALCILCA 120

Query: 183 TSALLSFSLFFISL 196
            + ++S +L F + 
Sbjct: 121 GTYIVSAALLFGAW 134

This family includes vitamin K epoxide reductase (VKOR) present in proteobacteria and spirochetes. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Length = 134

>gnl|CDD|184883 PRK14889, PRK14889, VKOR family protein; Provisional

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 39/143 (27%), Positives = 54/143 (37%), Gaps = 17/143 (11%)

Query: 59  GFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGG-ASCGDVLNSDYAVVFGVPLPF 117
            FS  G  A I         YL +  L     FC I    +C  VL+S YA   G+PL +
Sbjct: 14  AFSLVGLIASIAS-------YLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDY 66

Query: 118 IGMFAYGLVAVLGLLLAR-KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGA 176
           +G   +     L LL        +G   S   +I L       A   Y +Y L     GA
Sbjct: 67  LGAAWFSANIALALLGVGTLKRILGRVISLWSIIGL-------AIVPYLVY-LEVFVLGA 118

Query: 177 TCSYCLTSALLSFSLFFISLKEF 199
            C YC  + +   + F + L + 
Sbjct: 119 ICIYCTIAHVSILAAFILILIKL 141

Length = 143

>gnl|CDD|240601 cd12918, VKOR_arc, Vitamin K epoxide reductase family in archaea and some bacteria

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 68  GIGGVGFLETTYLSYLKLTNSD-AFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGL 125
            +  VG L + YL+Y          C I G  +C  VL+S Y+ + GVPL  +G+  + +
Sbjct: 5   ALSLVGLLASAYLTYEHYLKRPPLACTISGVINCEKVLSSPYSRILGVPLAVLGLAWFAV 64

Query: 126 VAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSA 185
           + VL LL A +   +     Y  ++  G +            I      GA C YC  + 
Sbjct: 65  LLVLSLLAALRVRLLLGALLYWSIL--GIAFVPYLVYLELFLI------GAICLYCTVAH 116

Query: 186 LLSFSLFFIS 195
           ++  +LF I 
Sbjct: 117 VIILALFIII 126

This family includes vitamin K epoxide reductase (VKOR) mostly present in archaea and some bacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Length = 126

>gnl|CDD|240600 cd12917, VKOR_euk, Vitamin K epoxide reductase family in eukaryotes, excluding plants

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 25/120 (20%)

Query: 90  AFCPIGGA-SCGDVLNSDYAVVFG-------------VPLPFIGMFAYGLVAVLGLLLAR 135
           A C I  + SC  V +S Y   FG              P    G+  Y L  +LGL    
Sbjct: 32  ALCDISESISCSKVFSSRYGRGFGLLGLILGKDSILNQPNSVFGIIFYILQLLLGL---- 87

Query: 136 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFIS 195
                  N +   L+LL  S      S Y  YIL        C  C+++ +++F L  ++
Sbjct: 88  ------TNSAVAALLLLTLSILSVVGSLYLAYILYFVLK-DFCIVCVSTYVVNFLLLILN 140

This family includes vitamin K epoxide reductase (VKOR) present in bacteria and plant. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. Warfarin, a widely used oral anticoagulant used in medicine as well as rodenticides, inhibits the activity of VKOR, resulting in decreased levels of reduced vitamin K, which is required for the function of several clotting factors. However, anticoagulation effect of warfarin is significantly associated with polymorphism of certain genes, including VKORC1. Interestingly, in rodents, an adaptive trait appears to have evolved convergently by selection on new or standing genetic polymorphisms in VKORC1 as well as by adaptive introgressive hybridization between species, likely brought about by human-mediated dispersal. Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
smart00756	142	VKc Family of likely enzymes that includes the cat	99.96
PRK14889	143	VKOR family protein; Provisional	99.96
PF07884	137	VKOR: Vitamin K epoxide reductase family; InterPro	99.93
COG4243	156	Predicted membrane protein [Function unknown]	99.92
PRK00611	135	putative disulfide oxidoreductase; Provisional	93.52
PRK03113	139	putative disulfide oxidoreductase; Provisional	91.91
PF07098	105	DUF1360: Protein of unknown function (DUF1360); In	82.65

>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase

Probab=99.96  E-value=2e-29  Score=207.51  Aligned_cols=132  Identities=37%  Similarity=0.583  Sum_probs=108.8

Q ss_pred             chhHHH-HHHHHHHHHHHHHHHHhHhcC-----CCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHh
Q 026640           61 SPYGWC-AGIGGVGFLETTYLSYLKLTN-----SDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL  133 (235)
Q Consensus        61 r~~~w~-lvLa~iGl~~S~YLt~~kl~~-----~~~~Cdin~-vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~~  133 (235)
                      |..+++ ++++.+|+++|.|++++|++.     +++.||+|+ .||++|++||||++||+||+++|+++|++++.+++..
T Consensus         2 ~~~~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~~~~~sC~~Vl~S~~a~~~GiP~s~lG~~~y~~~~~l~~~~   81 (142)
T smart00756        2 RWTRWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIPLSLLGIAAYLVVLALAVLG   81 (142)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCCCCCCCHHHHhcChhHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence            344555 678889999999999999742     348999998 9999999999999999999999999999999988874


Q ss_pred             -hcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHhcc
Q 026640          134 -ARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE  198 (235)
Q Consensus       134 -~~~~~~~~~~~~~~rw~~lgls~~~~~~svyll~i~~~~vI~alCpyC~~s~vvti~lf~~tl~~  198 (235)
                       .+.+.++|.     ++.+...++.+..+++|++|+|.+ +||++||||+++|++++++|+++..+
T Consensus        82 ~~~~~~~~~~-----~~~l~~~~~~~~~~s~yl~y~~~~-vi~~~C~~C~~~~~~~~~lf~~~~~~  141 (142)
T smart00756       82 LLGVTLPRWT-----WRLLFLGSLAGAVFSVYLIYLLVF-VIKALCLYCILSAVVSISLFILVTIG  141 (142)
T ss_pred             HccccchHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHccCcHHHHHHHHHHHHHHHHHHhc
Confidence             444555221     224444567778899999999987 59999999999999999999987754

Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.

>PRK14889 VKOR family protein; Provisional

Probab=99.96  E-value=3.8e-28  Score=200.96  Aligned_cols=132  Identities=23%  Similarity=0.389  Sum_probs=104.1

Q ss_pred             chhHHH-HHHHHHHHHHHHHHHHhH--hcCCCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHhhcc
Q 026640           61 SPYGWC-AGIGGVGFLETTYLSYLK--LTNSDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARK  136 (235)
Q Consensus        61 r~~~w~-lvLa~iGl~~S~YLt~~k--l~~~~~~Cdin~-vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~~~~~  136 (235)
                      ++++++ ++++.+|+++|.|++++|  .+++++.||+|+ +||++|++||||++||+||+++|+++|.+++.+++.....
T Consensus         6 ~~~~~ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~fGiP~s~lGl~~f~~~l~l~~~~~~~   85 (143)
T PRK14889          6 NGILYLLLAFSLVGLIASIASYLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDYLGAAWFSANIALALLGVGT   85 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCccHHHcCCchHHHHHHHHHHHHHHHHHHHcc
Confidence            445555 566779999999999987  457789999999 9999999999999999999999999999999998874322


Q ss_pred             cCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHhccc
Q 026640          137 SFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEF  199 (235)
Q Consensus       137 ~~~~~~~~~~~rw~~lgls~~~~~~svyll~i~~~~vI~alCpyC~~s~vvti~lf~~tl~~~  199 (235)
                       .+++..+  ..|.|   ......++.|+.|+|.+ +||++||||+++|++++++|++.....
T Consensus        86 -~~~~~~~--~~~~~---~~~g~~~~~yL~y~~~f-vi~a~C~~C~~~~~~~~~~~~~~~~~~  141 (143)
T PRK14889         86 -LKRILGR--VISLW---SIIGLAIVPYLVYLEVF-VLGAICIYCTIAHVSILAAFILILIKL  141 (143)
T ss_pred             -hhHHHHH--HHHHH---HHHHHHHHHHHHHHHHH-HHccCcHHHHHHHHHHHHHHHHHHHHH
Confidence             2211111  11222   23445678999999987 599999999999999999999876544

>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes

Probab=99.93  E-value=9.3e-26  Score=183.37  Aligned_cols=127  Identities=35%  Similarity=0.627  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHhcCC----CCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-hcccCC
Q 026640           66 CAGIGGVGFLETTYLSYLKLTNS----DAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-ARKSFP  139 (235)
Q Consensus        66 ~lvLa~iGl~~S~YLt~~kl~~~----~~~Cdin~-vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~~-~~~~~~  139 (235)
                      ..+++.+|+++|.|++++|++..    ++.||+++ .||++|++||||++||+||+.+|+++|..++.+++.. .+.+.+
T Consensus         5 ~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~~Gip~a~~G~~~f~~~l~~~~~~~~~~~~~   84 (137)
T PF07884_consen    5 LLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDIGPRISCDAVLNSPYAKIFGIPLALLGLAFFAFLLLLALLGLARRRLS   84 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------S-----------SGGGSSSSEETTEEHHHHHHHHHHHHHHHHH-----TT-S
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCccccCCCCcccCCCHHHHhhccchhhccCCchHHHHHHHHHHHHHHHHHhhccchh
Confidence            46788899999999999998644    48999998 9999999999999999999999999999999988763 323344


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHhcc
Q 026640          140 IGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE  198 (235)
Q Consensus       140 ~~~~~~~~rw~~lgls~~~~~~svyll~i~~~~vI~alCpyC~~s~vvti~lf~~tl~~  198 (235)
                      ++.     ....+..+.++..+++|+.|+|.+ ++|++|+||+++|++++.++++++.+
T Consensus        85 ~~~-----~~~l~~~~~~~~~~~~~l~~~~~~-~i~~~C~~Cl~~~~i~~~l~~l~~~~  137 (137)
T PF07884_consen   85 RWL-----WLLLFALSFIGLVFSLYLIYIQIF-VIKAWCPYCLVSYAINLALFILSLIR  137 (137)
T ss_dssp             TTH-----HHHHHHHHHHHHHHHHHHHHHHHT-TS----HHHHHHHHHHHHHHHHHHS-
T ss_pred             HHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            221     123344455666788999999986 59999999999999999999987753

VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.

>COG4243 Predicted membrane protein [Function unknown]

Probab=99.92  E-value=2e-24  Score=180.75  Aligned_cols=134  Identities=28%  Similarity=0.433  Sum_probs=106.8

Q ss_pred             CCchhHHH-HHHHHHHHHHHHHHHHhHh---cC--CCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHH
Q 026640           59 GFSPYGWC-AGIGGVGFLETTYLSYLKL---TN--SDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGL  131 (235)
Q Consensus        59 ~~r~~~w~-lvLa~iGl~~S~YLt~~kl---~~--~~~~Cdin~-vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l  131 (235)
                      .++..+|. +.++.+|...+.-++++++   ++  +...||.|+ .||++|++||||++||+||+++|+++|+++.++++
T Consensus         7 ~p~~~~~~~~i~G~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~sVl~Sp~A~~lGIPl~llG~a~Ft~~~i~al   86 (156)
T COG4243           7 APWILGWKVLILGVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYFTAVLIAAL   86 (156)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeccccccccccHHHHHcCcchhccCCchHHHHHHHHHHHHHHHH
Confidence            45677887 4555677777776666665   33  345678889 99999999999999999999999999999999998


Q ss_pred             HhhcccCCCcccchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHhcccch
Q 026640          132 LLARKSFPIGINESYGRLILLGS---STSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSV  201 (235)
Q Consensus       132 ~~~~~~~~~~~~~~~~rw~~lgl---s~~~~~~svyll~i~~~~vI~alCpyC~~s~vvti~lf~~tl~~~~~  201 (235)
                      ......++        ||+|.++   ++.+.+++.|++|++.+ ++|++|+||+++|+.++.+|++...+.+|
T Consensus        87 l~~~~~l~--------~~~~~~l~v~~~~g~~f~~yLiY~e~~-~~~alC~YCtv~h~~~l~~~vl~~~~~~~  150 (156)
T COG4243          87 LGVAGVLE--------RWTWIGLLVGSLVGSAFVPYLIYLELF-VIGALCLYCTVAHLSILLLFVLATAGRRW  150 (156)
T ss_pred             HHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            75333344        3444433   45677889999999876 69999999999999999999999888876

>PRK00611 putative disulfide oxidoreductase; Provisional

Probab=93.52  E-value=0.54  Score=39.02  Aligned_cols=60  Identities=22%  Similarity=0.296  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHhHh-cC-CCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 026640           67 AGIGGVGFLETTYLSYLKL-TN-SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL  132 (235)
Q Consensus        67 lvLa~iGl~~S~YLt~~kl-~~-~~~~Cdin~vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~  132 (235)
                      +.++..|+..+.|-.+.+. +. ..+.|.  +.+|+++   .| .++|++.|.+-+++|..++++.+.
T Consensus        69 l~~a~~G~~iA~~hv~lQ~~p~~~~~~Cg--~g~Ca~~---~~-~fl~lsiP~wSl~aF~~i~~l~~~  130 (135)
T PRK00611         69 LPLALVGFGIAIYQVCLQEIPGMTLDICG--RVSCSTK---LF-LFGFITMPMASAAAFCAIACLLVL  130 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCC--CCCCccc---ch-hcccccHHHHHHHHHHHHHHHHHH
Confidence            3557799999999887664 33 235785  3589998   34 789999999999999987766654

>PRK03113 putative disulfide oxidoreductase; Provisional

Probab=91.91  E-value=0.96  Score=37.62  Aligned_cols=63  Identities=19%  Similarity=0.327  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhH-hc---CCCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 026640           65 WCAGIGGVGFLETTYLSYLK-LT---NSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL  132 (235)
Q Consensus        65 w~lvLa~iGl~~S~YLt~~k-l~---~~~~~Cdin~vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~  132 (235)
                      ..+.++..|+.++.|-.+.+ ++   +..+.|.  +.+|+++.-.+   +.|++.|.+-+++|.+++++.+.
T Consensus        68 y~~l~a~~G~~iA~~h~~lq~~p~~~~~~~~Cg--~~~Ca~~~~~~---~g~lsiP~wSl~~F~~i~~l~~~  134 (139)
T PRK03113         68 YSLPISSIGACISLYHYAIQKIPFFSAAAASCG--RVPCTGEYINW---FGFVTIPFLALIAFITIAVCSFI  134 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcccccCCCCC--CCChhhhhHHH---hccCcHHHHHHHHHHHHHHHHHH
Confidence            34556679999999887765 33   2235776  34899865553   55699999999999998877654

>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7

Probab=82.65  E-value=2.9  Score=33.36  Aligned_cols=21  Identities=10%  Similarity=0.123  Sum_probs=16.8

Q ss_pred             cchhhHHHHHHHHHHHHHHhc
Q 026640          177 TCSYCLTSALLSFSLFFISLK  197 (235)
Q Consensus       177 lCpyC~~s~vvti~lf~~tl~  197 (235)
                      -||||+..|+.........+.
T Consensus        59 sCpwC~gvWvA~~~~~~~v~~   79 (105)
T PF07098_consen   59 SCPWCTGVWVAAGLAAGYVFA   79 (105)
T ss_pred             cChhHHHHHHHHHHHHHHHHh
Confidence            699999999998877655443

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	1e-25

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score =  100 bits (249), Expect = 1e-25
 Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 7/191 (3%)

Query: 44  SDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVL 103
           S   L+                 A + G+G L T YL+Y KLT   A    G      VL
Sbjct: 3   SYLKLKAQEETWLQR--HSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGDGGSDLVL 60

Query: 104 NSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASA 163
           +S +A   G+P   +G+  +  V  L +L           + +    L G  ++M A   
Sbjct: 61  SSRWAEFLGIPTAAVGLLGFLGVLALAVLPDGLPLV----KRWRWPALFGLVSAMTAFEM 116

Query: 164 YFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALS 223
           Y LY++        C YC T+ +L   L  +++      +  K+    + +A L +    
Sbjct: 117 YMLYLMVAVL-RQFCMYCTTAIILVAGLGLVTVLGHRWLDGGKLAFSYILVAFLTLVTTI 175

Query: 224 TSYSSIQPLSS 234
             Y++  P  S
Sbjct: 176 GVYANQVPPPS 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	100.0
2zuq_A	176	Disulfide bond formation protein B; disulfide bond	84.71

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=100.00  E-value=7.1e-36  Score=270.39  Aligned_cols=164  Identities=25%  Similarity=0.330  Sum_probs=139.9

Q ss_pred             CCchhHHH-HHHHHHHHHHHHHHHHhHhcC-CCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-hc
Q 026640           59 GFSPYGWC-AGIGGVGFLETTYLSYLKLTN-SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-AR  135 (235)
Q Consensus        59 ~~r~~~w~-lvLa~iGl~~S~YLt~~kl~~-~~~~Cdin~vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~~-~~  135 (235)
                      ..|..+|+ ++++++|+++|+||+++|+++ ++++||+| .||++|++||||++||+||+++|+++|++++++++.. .+
T Consensus        15 ~~~~~~~~~~~l~~iGl~~s~yLt~~~~~~~~~~~C~~~-~sC~~Vl~S~~a~~fGiP~~~~G~~~y~~v~~l~~~~~~~   93 (291)
T 3kp9_A           15 LQRHSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGD-GGSDLVLSSRWAEFLGIPTAAVGLLGFLGVLALAVLPDGL   93 (291)
T ss_dssp             -CCSCSHHHHHHHHHHHHHHHHHHHHHHHCCCCSCCCC----CCSGGGSSSSEETTEEHHHHHHHHHHHHHHHHHCC--C
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CChhhhcccccHhhcCCcHHHHHHHHHHHHHHHHHHHhhc
Confidence            44455554 678889999999999999987 88999998 7999999999999999999999999999999999864 33


Q ss_pred             ccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 026640          136 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIA  215 (235)
Q Consensus       136 ~~~~~~~~~~~~rw~~lgls~~~~~~svyll~i~~~~vI~alCpyC~~s~vvti~lf~~tl~~~~~~~~~~~~~~~~~~~  215 (235)
                      .++++|     .++.++..++++.+++.|++|++.+ +||++||||+++|++++++|++++.|++|+|++|+++++++|+
T Consensus        94 ~~~~~~-----~~~~l~~~~~~~~~fs~yL~y~~~~-vi~a~C~~C~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~  167 (291)
T 3kp9_A           94 PLVKRW-----RWPALFGLVSAMTAFEMYMLYLMVA-VLRQFCMYCTTAIILVAGLGLVTVLGHRWLDGGKLAFSYILVA  167 (291)
T ss_dssp             TTCSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH-TSCCCCHHHHHHHHHHHHHHHHHHSSCHHHHCTHHHHHHHHHH
T ss_pred             cchhhH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHHHHHhCCChhhhhHHHHHHHHHH
Confidence            555532     1234444567788899999999987 5999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccCC
Q 026640          216 SLVVAALSTSYSSI  229 (235)
Q Consensus       216 ~~v~~~~~~~~~~~  229 (235)
                      ++|++|++++|+++
T Consensus       168 ~~~~~~~~~~~~~~  181 (291)
T 3kp9_A          168 FLTLVTTIGVYANQ  181 (291)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999997

>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*

Probab=84.71  E-value=2.9  Score=34.38  Aligned_cols=61  Identities=15%  Similarity=0.116  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHhH-hcCCCCCCCCC------------------C-CCccccccccchhccCCchhHHHHHHHHHHH
Q 026640           68 GIGGVGFLETTYLSYLK-LTNSDAFCPIG------------------G-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVA  127 (235)
Q Consensus        68 vLa~iGl~~S~YLt~~k-l~~~~~~Cdin------------------~-vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl  127 (235)
                      ..+.+|...+.|=++.+ .++..+.|+..                  + .+|+++-    =++||++.|.+-+++|.+++
T Consensus        79 ~~a~~G~~iA~~H~~lq~~p~~~~~C~~~~~~~~~~pl~~~l~~~~~~~g~C~~~~----w~~lGlsmp~wsli~F~~~~  154 (176)
T 2zuq_A           79 YSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWVPQVFVASGDCAERQ----WDFLGLEMPQWLLGIFIAYL  154 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSSCCCCCCC-----CCSSTTCSTTTCCCCCCCSCC----CCSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCchhcccCCCHHHHHHHHhcCCCCCcccc----HHHcCCcHHHHHHHHHHHHH
Confidence            34568999998866655 44444789631                  4 6788763    24899999999999999888


Q ss_pred             HHHHH
Q 026640          128 VLGLL  132 (235)
Q Consensus       128 ~l~l~  132 (235)
                      ++++.
T Consensus       155 ~~~~~  159 (176)
T 2zuq_A          155 IVAVL  159 (176)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            77765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00