Citrus Sinensis ID: 026641

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Secondary Structure (PSIPRED)
cccccHHHHcccHHHHHHccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccEEEEEEEEccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHccccHHHHHHHHHccccccccccccccccccHHHccccccccHHHHcccccccccccccccccccccccccccHHHHHHHccccccccccHHccccccccccEEEccccccccccccccccEEccccccccccccccccccccccccccccEEEEEEEEEccccccccccHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEccccccEEEEEEccc
Coil and Loop (DISEMBL)
mskepkdcrETYSQIKRRRMLQFDTqvvdsslcsdempspflksnergesveevlpeasqwttefsagvsasscdgtdqslEGWIseclndpemnfstdellrdfsgasdiqidisefsnsppayddanilqqhctktphnvvfrgrkslirtptklassvaypfafikpcgvhgditlkdinqrihspastlrqntedpsaypksafsgkpvvgktkirteggkgsITIMRTKG
Flexible Loop (DISEMBL)
mskepkdcretysqikrrrmlqfDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSpastlrqntedpsaypksafsgkpvvgktkirteggkgsitimrtkg
Low Complexity Region (SEG)
MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Disordered region (IsUnstruct)
********************************************************************************LEGWISECLNDPEMNFSTDELLRDFSGASDIQIDIS*******AYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQ***************************************************
Disordered Region (DISOPRED)
*******************MLQFDT*********************RGESVEEVLPE*********************QSLEGWISECLNDP********************************************************************VAYPFAFIKPCGVHGDITLKDINQR*************************KPVVGKTKIRTEGGKGSITIMRTK*
Disordered Region (DISEMBL)
***********YSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTT*************TDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS**************SAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Disordered Region (DISPRO)
***************K*****QFD*********************************A*Q******AGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASD*Q*D*S*FS************************************KLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS****************FSGKPVVGKTKIRTEGGKGSITIMRTKG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q6NLW5	300	Protein XRI1 OS=Arabidops	no	no	0.940	0.736	0.539	2e-58

>sp|Q6NLW5|XRI1_ARATH Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 158/226 (69%), Gaps = 5/226 (2%)

Query: 10  ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGV 69
           ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   
Sbjct: 80  ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDA 138

Query: 70  SASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDAN 129
           SASS +G D   E W ++CLND E     D+L  +F G+ D+Q+DISE+ N PP  +   
Sbjct: 139 SASSFEGLDLYAEEWYADCLNDAETPMLPDDL--NF-GSPDVQVDISEYLNVPPETETRE 195

Query: 130 ILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSP 189
           + Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P
Sbjct: 196 V-QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNP 254

Query: 190 ASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 235
            +  + + E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 255 PAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300

Required for mitotic division of the generative cell nucleus and the development of mature tricellular pollen grains, and for male and female meiosis.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
255560125	293	conserved hypothetical protein [Ricinus	0.987	0.791	0.635	2e-82
224069822	280	predicted protein [Populus trichocarpa]	0.978	0.821	0.618	1e-73
449453276	304	PREDICTED: protein XRI1-like [Cucumis sa	0.982	0.759	0.577	3e-67
356559041	309	PREDICTED: protein XRI1-like [Glycine ma	0.982	0.747	0.560	2e-65
356527366	302	PREDICTED: protein XRI1-like [Glycine ma	0.965	0.751	0.555	4e-65
147771043	320	hypothetical protein VITISV_010925 [Viti	0.804	0.590	0.654	6e-65
363808040	298	uncharacterized protein LOC100791247 [Gl	0.974	0.768	0.573	8e-65
356506666	327	PREDICTED: LOW QUALITY PROTEIN: protein	0.965	0.694	0.567	9e-64
297792063	266	hypothetical protein ARALYDRAFT_494937 [	0.940	0.830	0.553	5e-58
79532088	266	protein XRI1 [Arabidopsis thaliana] gi|4	0.940	0.830	0.539	4e-57

>gi|255560125|ref|XP_002521080.1| conserved hypothetical protein [Ricinus communis] gi|223539649|gb|EEF41231.1| conserved hypothetical protein [Ricinus communis]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 157/247 (63%), Positives = 189/247 (76%), Gaps = 15/247 (6%)

Query: 1   MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSN-----------ERGE 49
           M KEP++ RET SQ+KRRRMLQFDTQ  DS LC +E+ S FL+SN           ER +
Sbjct: 50  MHKEPEEHRETSSQLKRRRMLQFDTQAADSPLCHEEISSVFLQSNATVNVFVTYVQERED 109

Query: 50  SVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGAS 109
           S+EEVLP+AS W   FSA VSASS +  D S EGW+++C ND EM  S +++  +F GA 
Sbjct: 110 SLEEVLPQASDWVPGFSADVSASSYEALDHSSEGWLADCFNDTEMGLSPNDM--NFPGAC 167

Query: 110 DIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIK 169
           D+QIDISEF N P   ++A+ +Q+  T+TP NV+F+G+KS IRTPTKLASSV YPFAFIK
Sbjct: 168 DVQIDISEFCNGPLG-NEAHAVQKRITRTPRNVIFKGKKSFIRTPTKLASSVVYPFAFIK 226

Query: 170 PCGVHGDITLKDINQRIHS-PASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSI 228
           PCG HGD+TLKDINQ+I + P S L+QN EDP+AYP SAFSGKPVVGKTKIRTEGGKGSI
Sbjct: 227 PCGFHGDVTLKDINQKIRTPPPSKLKQNEEDPAAYPTSAFSGKPVVGKTKIRTEGGKGSI 286

Query: 229 TIMRTKG 235
           TIMRTKG
Sbjct: 287 TIMRTKG 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069822|ref|XP_002303048.1| predicted protein [Populus trichocarpa] gi|222844774|gb|EEE82321.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 146/236 (61%), Positives = 181/236 (76%), Gaps = 6/236 (2%)

Query: 1   MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQ 60
           M+KEP++ RET  Q KRRR LQFDT + DS  C +++ S FLKSNE  ES+EEV P+ASQ
Sbjct: 50  MNKEPEERRETCFQFKRRR-LQFDTHLADSPFCDEDLTSVFLKSNETEESLEEVFPQASQ 108

Query: 61  WTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSN 120
           W + +   +SAS  +G D S + WI++C ND  M+FS +++  +F GASDIQIDIS+F N
Sbjct: 109 WDSGYQ-DMSASCYNGLDPSSDPWIADCFNDSGMHFSPNDM--NFPGASDIQIDISDFCN 165

Query: 121 SPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLK 180
            PP ++ A+ +Q+   +TP NVVF+G KS I+TPTKLA+SVAYPFAFIKPCGVHGD+TL 
Sbjct: 166 DPPEFE-ASTVQKCVPRTPRNVVFKGTKSFIQTPTKLATSVAYPFAFIKPCGVHGDVTLN 224

Query: 181 DINQRIHS-PASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 235
           +INQRI + P S  +Q  EDP  YP SAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Sbjct: 225 EINQRIRTPPPSKSKQKDEDPVVYPMSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453276|ref|XP_004144384.1| PREDICTED: protein XRI1-like [Cucumis sativus] gi|449529551|ref|XP_004171763.1| PREDICTED: protein XRI1-like [Cucumis sativus]

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 138/239 (57%), Positives = 174/239 (72%), Gaps = 8/239 (3%)

Query: 2   SKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQW 61
           +K+ ++ RET+SQ KRRRMLQF  Q +++S+C +++ S FLKS+ +  S    L E S  
Sbjct: 69  NKKSEESRETHSQAKRRRMLQFTAQDLETSICREDLSSRFLKSHNKVVSSPAALAEVSYG 128

Query: 62  TTEFSA---GVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEF 118
             E S     V  S  +  D S EGWI+ECLND +M+ S ++L   F+G SDIQID+SEF
Sbjct: 129 IPECSGLADNVLISCHENLDHSPEGWIAECLNDADMHCSPEDL--SFAGTSDIQIDVSEF 186

Query: 119 SNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDIT 178
            +  P +  +N++Q H T+ P N++F+GRKS IRTPTKLASSVAYPFAFIKPCG HGD+T
Sbjct: 187 CDGAPEFK-SNVVQHHPTRAPPNIIFKGRKSYIRTPTKLASSVAYPFAFIKPCGFHGDVT 245

Query: 179 LKDINQRIHS-PASTLRQNTEDPS-AYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 235
           LKDINQRI + P S L+   EDPS +YP SAFSGKPVVGKTKI TEGGKGSITIMRT+G
Sbjct: 246 LKDINQRIRTPPPSKLKHQPEDPSESYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTRG 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559041|ref|XP_003547810.1| PREDICTED: protein XRI1-like [Glycine max]

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 135/241 (56%), Positives = 172/241 (71%), Gaps = 10/241 (4%)

Query: 1   MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQ 60
           M KE ++CRETYSQ KRRRMLQF++Q  D SL ++ M   +LK N + + V+E+ PE SQ
Sbjct: 73  MQKELEECRETYSQAKRRRMLQFNSQESDQSLSNEGMSLSYLK-NGKEDPVKEIFPEVSQ 131

Query: 61  WTT---EFSAGVSASSCDGTD-QSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDIS 116
           W +   +F+ G +AS+ D  D +S E W+++  ND EM+ S +EL   FS A D+QID +
Sbjct: 132 WVSGASDFTLG-NASASDYVDLESTETWLADYFNDAEMDISPEEL--KFSVADDVQIDGT 188

Query: 117 EFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGD 176
           E S   P+ +   + Q H  +T  N++F+GRKS I  PTKLASSVAYPFAFIKP G HGD
Sbjct: 189 EVSAIKPSREQNVVQQTHIPRTTRNIIFKGRKSFIHMPTKLASSVAYPFAFIKPSGAHGD 248

Query: 177 ITLKDINQRIHS--PASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTK 234
           +TLK+INQ I +  P  + + N +DPSAYPKSAFSGKPVVGKTKIRTEGGKGSITI RTK
Sbjct: 249 VTLKEINQHIQTPPPLKSKQSNDDDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITITRTK 308

Query: 235 G 235
           G
Sbjct: 309 G 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527366|ref|XP_003532282.1| PREDICTED: protein XRI1-like [Glycine max]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 131/236 (55%), Positives = 168/236 (71%), Gaps = 9/236 (3%)

Query: 3   KEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWT 62
           KE   C ++  QIKRRRMLQF++Q     L +++M S +LK  E  E  E+V PE SQW 
Sbjct: 73  KESDKCLKSSYQIKRRRMLQFNSQDGGHLLSNEQMSSAYLKGKE--EPKEDVFPEFSQWV 130

Query: 63  TEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSP 122
           +      SAS+ +   +S EGW+++C  D EM    D+L  +FSGA ++Q+D+++  N P
Sbjct: 131 SGTPGSASASNYEDL-ESAEGWLADCFKDAEMQLCPDDL--NFSGADEVQVDVADLGNFP 187

Query: 123 PAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDI 182
           PA +  N++Q   T+TP N++F+G KS I TPTKLA+SVAYPFAFIKPCG HGD+TLK+I
Sbjct: 188 PACEQ-NVVQHGFTQTPKNIIFKGGKSFIETPTKLAASVAYPFAFIKPCGAHGDVTLKEI 246

Query: 183 NQRIHSPASTLR---QNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 235
           NQRI SP   L+   Q+ EDPSAYPKSAFSGKPVVGKT+I  EGGKGSITIMRTKG
Sbjct: 247 NQRILSPPPPLKSQQQSMEDPSAYPKSAFSGKPVVGKTRIHIEGGKGSITIMRTKG 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771043|emb|CAN65243.1| hypothetical protein VITISV_010925 [Vitis vinifera]

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 127/194 (65%), Positives = 152/194 (78%), Gaps = 5/194 (2%)

Query: 44  SNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLR 103
           S ER   VEE  P+ASQW + F   +S S  +G D+S EGW++EC ND EM+FS D++  
Sbjct: 130 SQERESFVEETQPDASQWVSGFPENMSVSGYEGLDKSSEGWLAECFNDAEMHFSPDDM-- 187

Query: 104 DFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAY 163
           + S  SD+QID++EF N P  Y+ AN +Q+  T+TP NV+F+GRKS +RTPTKLASSVAY
Sbjct: 188 NLSEISDVQIDVTEFYNIPTEYE-ANTVQERATRTPQNVIFKGRKSYMRTPTKLASSVAY 246

Query: 164 PFAFIKPCGVHGDITLKDINQRIHS-PASTLRQNTEDPS-AYPKSAFSGKPVVGKTKIRT 221
           PFAFIKPCGVHGD+TLKDINQRI + P S  RQ+ EDPS +YP SAFSGKPVVGKTKIRT
Sbjct: 247 PFAFIKPCGVHGDVTLKDINQRIRTPPPSKSRQSNEDPSVSYPTSAFSGKPVVGKTKIRT 306

Query: 222 EGGKGSITIMRTKG 235
           EGGKGSITIMRTKG
Sbjct: 307 EGGKGSITIMRTKG 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808040|ref|NP_001242722.1| uncharacterized protein LOC100791247 [Glycine max] gi|255647285|gb|ACU24109.1| unknown [Glycine max]

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 136/237 (57%), Positives = 167/237 (70%), Gaps = 8/237 (3%)

Query: 1   MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQ 60
           + KE   C ++  QIKRRRMLQF+TQ     L ++ M S +LK  E  ES E+V PE S 
Sbjct: 68  LQKESDKCLKSSDQIKRRRMLQFNTQDGGHFLSNEHMSSAYLKGKE--ESNEDVFPELSH 125

Query: 61  WTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSN 120
           W +  S   SAS+ +   +S EGW+++C  D EM    D+L  +FSGA  +QID+++  N
Sbjct: 126 WVSGASGSASASNYEDL-ESAEGWLADCFKDAEMQLCPDDL--NFSGADAVQIDVADLCN 182

Query: 121 SPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLK 180
            PPA +  N+LQ H T+TP N+VF+G KS I TPTKLA+SVAYPF FIKPCG HGD+TLK
Sbjct: 183 FPPACE-QNVLQHHVTQTPKNIVFKGGKSFIETPTKLAASVAYPFTFIKPCGAHGDVTLK 241

Query: 181 DINQRIHSPASTLR--QNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 235
           +INQRI SP   L+  Q+ EDPSAYPKSAFSGKPVVGKTKI  EGGKGSITIM TKG
Sbjct: 242 EINQRILSPPPPLKSQQSMEDPSAYPKSAFSGKPVVGKTKIHIEGGKGSITIMGTKG 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506666|ref|XP_003522097.1| PREDICTED: LOW QUALITY PROTEIN: protein XRI1-like [Glycine max]

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 134/236 (56%), Positives = 170/236 (72%), Gaps = 9/236 (3%)

Query: 4   EPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTT 63
           EP++CRETYSQ KRRRMLQF++Q  D SL ++EM   +LK N + + V+E+ PE SQW +
Sbjct: 97  EPEECRETYSQXKRRRMLQFNSQDSDQSLSNEEMSLSYLK-NGKEDPVKEIFPEVSQWVS 155

Query: 64  EFSAGVSASSCDGTD-QSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDI-SEFSNS 121
             S   SAS  D  D +S E W+++  ND  M+FS +EL  +FS A  +QID  +E S  
Sbjct: 156 GASGNASAS--DYVDLESTETWLADYFNDAVMDFSPEEL--NFSVADGVQIDDGTEVSAI 211

Query: 122 PPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKD 181
            P+++   + Q H  +T  N++F+GRKS I  PTKLASSVAYPFAFIKP G HGD+TLK+
Sbjct: 212 TPSHEQNVVQQTHVPRTTCNIIFKGRKSFIHMPTKLASSVAYPFAFIKPSGAHGDVTLKE 271

Query: 182 INQRIHSPASTLRQNT--EDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 235
           INQRI +P+ +    +  +DPSAYPKSAFSGKPVVGKTKIRTEGGKGSITI RTKG
Sbjct: 272 INQRIQTPSPSKSNQSIDDDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITITRTKG 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792063|ref|XP_002863916.1| hypothetical protein ARALYDRAFT_494937 [Arabidopsis lyrata subsp. lyrata] gi|297309751|gb|EFH40175.1| hypothetical protein ARALYDRAFT_494937 [Arabidopsis lyrata subsp. lyrata]

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 157/226 (69%), Gaps = 5/226 (2%)

Query: 10  ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGV 69
           ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R E+ +E+LPE SQ    FS   
Sbjct: 46  ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDETFDELLPEGSQLIEGFSEDA 104

Query: 70  SASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDAN 129
           SASS +G D   E W +ECLND E     D+L   F G+ D+Q+DISE+ N PP  +   
Sbjct: 105 SASSFEGLDLYAEEWYAECLNDAETPMLPDDL--SF-GSPDVQVDISEYLNVPPETETRE 161

Query: 130 ILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSP 189
             Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P
Sbjct: 162 A-QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNP 220

Query: 190 ASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 235
            +  +Q+ E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 221 PAKPKQHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 266

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79532088|ref|NP_199683.2| protein XRI1 [Arabidopsis thaliana] gi|45773794|gb|AAS76701.1| At5g48720 [Arabidopsis thaliana] gi|58531328|gb|AAW78586.1| At5g48720 [Arabidopsis thaliana] gi|332008332|gb|AED95715.1| protein XRI1 [Arabidopsis thaliana]

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 158/226 (69%), Gaps = 5/226 (2%)

Query: 10  ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGV 69
           ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   
Sbjct: 46  ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDA 104

Query: 70  SASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDAN 129
           SASS +G D   E W ++CLND E     D+L  +F G+ D+Q+DISE+ N PP  +   
Sbjct: 105 SASSFEGLDLYAEEWYADCLNDAETPMLPDDL--NF-GSPDVQVDISEYLNVPPETETRE 161

Query: 130 ILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSP 189
           + Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P
Sbjct: 162 V-QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNP 220

Query: 190 ASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 235
            +  + + E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 221 PAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2156519	300	XRI1 "AT5G48720" [Arabidopsis	0.940	0.736	0.539	1.6e-56
TAIR|locus:2041110	213	AT2G01990 "AT2G01990" [Arabido	0.617	0.680	0.365	4.4e-13
TAIR|locus:2204538	226	AT1G14630 "AT1G14630" [Arabido	0.314	0.327	0.506	7.7e-09

TAIR|locus:2156519 XRI1 "AT5G48720" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 122/226 (53%), Positives = 158/226 (69%)

Query:    10 ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGV 69
             ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   
Sbjct:    80 ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDA 138

Query:    70 SASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDAN 129
             SASS +G D   E W ++CLND E     D+L  +F G+ D+Q+DISE+ N PP  +   
Sbjct:   139 SASSFEGLDLYAEEWYADCLNDAETPMLPDDL--NF-GSPDVQVDISEYLNVPPETETRE 195

Query:   130 ILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSP 189
             + Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P
Sbjct:   196 V-QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNP 254

Query:   190 ASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 235
              +  + + E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct:   255 PAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=IMP

GO:0007140 "male meiosis" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0010165 "response to X-ray" evidence=IEP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2041110 AT2G01990 "AT2G01990" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 64/175 (36%), Positives = 86/175 (49%)

Query:    78 DQSLEGW-ISE---CLND----PEMNFSTDELLRDFSGASDIQIDISEFSNSPP---AYD 126
             D S   W + E   CLN     P +N  T E +   SG S  Q  IS    SP    +YD
Sbjct:    52 DDSQNDWGLHESYSCLNSQFVTPHVN--TGERI---SGVSYCQETISNVYESPDTSVSYD 106

Query:   127 DANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRI 186
                + ++  T+   +      K LI   TKL     YPF  +KP G   D+TL DIN+RI
Sbjct:   107 KIYVREKSPTEPSSSNCGNKNKRLI---TKLV----YPFGLVKPGGRENDVTLNDINERI 159

Query:   187 -HSPASTLRQNTEDPSAYP-----KSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 235
               +P+  +R    D ++ P         SGK VV  TKI+T+G +G+ITI+RTKG
Sbjct:   160 LMAPSRPIRHPVGDFASRPCVSGRGPGLSGKAVVALTKIQTQG-RGTITIIRTKG 213

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204538 AT1G14630 "AT1G14630" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 41/81 (50%), Positives = 49/81 (60%)

Query:   161 VAYPFAFIKPCGVHGDITLKDINQRIHSP-ASTLRQNTEDPSAYP-KSA----FSGKPVV 214
             V YPF  +KP G   DITL DIN+RI  P A  +R    D +  P  SA     SGK VV
Sbjct:   147 VVYPFGVVKPGGREEDITLNDINKRILMPSARPVRHPVGDFACRPCVSADGPGLSGKAVV 206

Query:   215 GKTKIRTEGGKGSITIMRTKG 235
               TKI+T G +G+ITI+RTKG
Sbjct:   207 AFTKIQTLG-RGTITIIRTKG 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.129   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       235   0.00088  113 3  11 23  0.48    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  189 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.99u 0.20s 23.19t   Elapsed:  00:00:02
  Total cpu time:  22.99u 0.20s 23.19t   Elapsed:  00:00:02
  Start:  Fri May 10 23:34:02 2013   End:  Fri May 10 23:34:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00