Citrus Sinensis ID: 026678

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASSCTSNEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPGNFIIMIWCI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEEccccccccccccccccccccEEEEcccccEEEEEcccccccccEEEEcccccEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHccccccccccccEEEccHHHHHHHHHcccEEEEEcccccccHHHHHHcccccHHHHHHHHccccccccccccEEEEEEccccccccEEcccccEccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEccccccEccccccccHHccccEEEEEccccEEEEEccccccccccEEEEccccEEEEccHHHHHHccccccccccEEEEEEc
Coil and Loop (DISEMBL)
MQEQSQWIREsltsfpqppnrtnhnafygpiDDLFNAVKEKKVLLEEEssigsldlgassctsnedahrWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCtlglqfdwskrnynvslphkkiPDALCQLAKRlaapampigeefqpeaAIVNYFGlgdtlgghlddmeadwskpivsmslGCKAIFLlggksredpplamfLRSGDAVLMAGearecfhgecvlpgnFIIMIWCI
Flexible Loop (DISEMBL)
MQEQSQWIRESltsfpqppnrtNHNAFYGPIDDLFNAVKEKKVLLEEEssigsldlgassctsnEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFhgecvlpgnFIIMIWCI
Low Complexity Region (SEG)
MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAvkekkvlleeeSSIGSLDLGASSCTSNEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFglgdtlgghlddMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPGNFIIMIWCI
Disordered region (IsUnstruct)
************************NAFYGPIDDLFNAVKEKKVLLE**************C**NEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPGNFIIMIWC*
Disordered Region (DISOPRED)
*QEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKV*****************CTSNEDAHRWKFYEEDIAT****************KLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPGNF****WC*
Disordered Region (DISEMBL)
*********ESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASSCTSNEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPGNFIIMIWCI
Disordered Region (DISPRO)
MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASSCTSNEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPGNFIIMIWCI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASSCTSNEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPGNFIIMIWCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q9SA98	345	Alpha-ketoglutarate-depen	yes	no	0.868	0.591	0.733	5e-91
Q54N08	393	Alpha-ketoglutarate-depen	yes	no	0.834	0.498	0.364	3e-32
P0CB42	389	Alkylated DNA repair prot	yes	no	0.697	0.421	0.362	3e-23
Q13686	389	Alkylated DNA repair prot	yes	no	0.655	0.395	0.388	6e-23
O60066	302	Alpha-ketoglutarate-depen	yes	no	0.638	0.496	0.348	1e-21
P05050	216	Alpha-ketoglutarate-depen	N/A	no	0.553	0.601	0.356	3e-13
P0CAT7	220	Alpha-ketoglutarate-depen	yes	no	0.544	0.581	0.348	8e-13
B8GWW6	220	Alpha-ketoglutarate-depen	yes	no	0.544	0.581	0.348	8e-13
P37462	216	Alpha-ketoglutarate-depen	yes	no	0.565	0.615	0.333	1e-11

>sp|Q9SA98|ALKBH_ARATH Alpha-ketoglutarate-dependent dioxygenase alkB OS=Arabidopsis thaliana GN=At1g11780 PE=2 SV=2

 Score =  333 bits (855), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 162/221 (73%), Positives = 181/221 (81%), Gaps = 17/221 (7%)

Query: 1   MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASS 60
           ++EQ +WI+ESLTSFPQPPNRTNHNA YGPIDDLF++ KE KVL++++            
Sbjct: 96  LKEQCKWIKESLTSFPQPPNRTNHNAIYGPIDDLFDSAKENKVLVQDD------------ 143

Query: 61  CTSNEDAHRWKFYEE-DIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPH 119
            T+N    +WKFYEE DI      +CKSV A VLLRKLRW TLGLQFDWSKRNY+VSLPH
Sbjct: 144 LTNN----KWKFYEEVDIEKATRSSCKSVSASVLLRKLRWSTLGLQFDWSKRNYDVSLPH 199

Query: 120 KKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMS 179
             IPDALCQLAK  AA AMP GEEF+PE AIVNYFG+GDTLGGHLDDMEADWSKPIVSMS
Sbjct: 200 NNIPDALCQLAKTHAAIAMPDGEEFRPEGAIVNYFGIGDTLGGHLDDMEADWSKPIVSMS 259

Query: 180 LGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
           LGCKAIFLLGGKS++DPP AM+LRSGD VLMAGEARECFHG
Sbjct: 260 LGCKAIFLLGGKSKDDPPHAMYLRSGDVVLMAGEARECFHG 300

Putative dioxygenase that may repair alkylated DNA or RNA by oxidative demethylation. Requires molecular oxygen, alpha-ketoglutarate and iron.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp|Q54N08|ALKB_DICDI Alpha-ketoglutarate-dependent dioxygenase alkB OS=Dictyostelium discoideum GN=alkB PE=2 SV=1

 Score =  138 bits (348), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 26/222 (11%)

Query: 3   EQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGA-SSC 61
           +Q +WI+ +L  +  PPN  N   F+GPI +L+    EK+++ EE  S G  D       
Sbjct: 136 QQKKWIKHALEDYADPPNNNNITLFHGPIKNLWKN-GEKELINEELKSQGKHDDDEIEQP 194

Query: 62  TSNEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKK 121
           T   D +      E + T R           LL KL W TLG Q+ W+ R Y+    +++
Sbjct: 195 TRPLDKNG-----EPLPTYRQ----------LLDKLAWSTLGYQYQWTPRLYSEEF-YEE 238

Query: 122 IPDALCQLAKRLAAPAMPIGEEFQP---EAAIVNYFGLGDTLGGHLDDMEADWSKPIVSM 178
            PD L +L +++A     I  +F P   EAA VN++     +GGHLDD E +  KPI+S+
Sbjct: 239 FPDDLQELVQKIA-----IATKFDPYVAEAATVNFYSEDSIMGGHLDDAEQEMEKPIISI 293

Query: 179 SLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
           S G  A+FL+G ++R+  P+ +F+RSGD V+M G +R C+HG
Sbjct: 294 SFGSTAVFLMGAETRDIAPVPLFIRSGDIVIMGGRSRYCYHG 335

Putative dioxygenase that may repair alkylated DNA or RNA by oxidative demethylation. Requires molecular oxygen, alpha-ketoglutarate and iron.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|P0CB42|ALKB1_MOUSE Alkylated DNA repair protein alkB homolog 1 OS=Mus musculus GN=Alkbh1 PE=1 SV=1

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 97/193 (50%), Gaps = 29/193 (15%)

Query: 64  NEDAHRWK-----FYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLP 118
           N D H  K      +E+    LR K     +   LL +LRW TLG  ++W  + Y+    
Sbjct: 130 NLDKHMTKEETQGLWEQSKEVLRSKEVTKRRPRSLLERLRWVTLGYHYNWDSKKYSADH- 188

Query: 119 HKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSM 178
           +   P  L  L++++A      G  FQ EA I+NY+ L  TLG H+D  E D SKP++S 
Sbjct: 189 YTPFPSDLAFLSEQVATACGFQG--FQAEAGILNYYRLDSTLGIHVDRSELDHSKPLLSF 246

Query: 179 SLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFH----------GEC------ 222
           S G  AIFLLGG  R++ P AMF+ SGD ++M+G +R   H          GEC      
Sbjct: 247 SFGQSAIFLLGGLKRDEAPTAMFMHSGDIMVMSGFSRLLNHAVPRVLPHPDGECLPHCLE 306

Query: 223 -----VLPGNFII 230
                VLP N ++
Sbjct: 307 TPLPAVLPSNSLV 319

Dioxygenase that repairs alkylated single-stranded DNA and RNA containing 3-methylcytosine by oxidative demethylation. Requires molecular oxygen, alpha-ketoglutarate and iron. Has DNA lyase activity and introduces double-stranded breaks at abasic sites. Cleaves both single-stranded DNA and double-stranded DNA at abasic sites, with the greatest activity towards double-stranded DNA with two abasic sites. DNA lyase activity does not require alpha-ketoglutarate and iron (By similarity). May have a role in placental trophoblast lineage differentiation.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 2

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 8

>sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 8/162 (4%)

Query: 64  NEDAHRWK-----FYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLP 118
           N D H  K      +E+    LR K     +   LL KLRW T+G  ++W  + Y+    
Sbjct: 130 NLDKHMSKEETQDLWEQSKEFLRYKEATKRRPRSLLEKLRWVTVGYHYNWDSKKYSADH- 188

Query: 119 HKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSM 178
           +   P  L  L++++AA      E+F+ EA I+NY+ L  TLG H+D  E D SKP++S 
Sbjct: 189 YTPFPSDLGFLSEQVAAACG--FEDFRAEAGILNYYRLDSTLGIHVDRSELDHSKPLLSF 246

Query: 179 SLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
           S G  AIFLLGG  R++ P AMF+ SGD ++M+G +R   H 
Sbjct: 247 SFGQSAIFLLGGLQRDEAPTAMFMHSGDIMIMSGFSRLLNHA 288

Dioxygenase that repairs alkylated single-stranded DNA and RNA containing 3-methylcytosine by oxidative demethylation. Requires molecular oxygen, alpha-ketoglutarate and iron. May have a role in placental trophoblast lineage differentiation (By similarity). Has DNA lyase activity and introduces double-stranded breaks at abasic sites. Cleaves both single-stranded DNA and double-stranded DNA at abasic sites, with the greatest activity towards double-stranded DNA with two abasic sites. DNA lyase activity does not require alpha-ketoglutarate and iron.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 2

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 8

>sp|O60066|ALKBH_SCHPO Alpha-ketoglutarate-dependent dioxygenase abh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=abh1 PE=2 SV=3

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 5/155 (3%)

Query: 70  WKFYE----EDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDA 125
           W+ Y     E I    G+T       ++ +KLRW TLG Q+DW+ + Y         P  
Sbjct: 109 WRRYYNGDGESIIDGLGETKPLTVDRLVHKKLRWVTLGEQYDWTTKEYPDPSKSPGFPKD 168

Query: 126 LCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAI 185
           L    +++   +      ++ EAAIVN++  GDTL  H+D+ E D + P++S+S+G   I
Sbjct: 169 LGDFVEKVVKESTDF-LHWKAEAAIVNFYSPGDTLSAHIDESEEDLTLPLISLSMGLDCI 227

Query: 186 FLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
           +L+G +SR + P A+ L SGD V+M G +R+ FH 
Sbjct: 228 YLIGTESRSEKPSALRLHSGDVVIMTGTSRKAFHA 262

Putative dioxygenase that may repair alkylated DNA or RNA by oxidative demethylation. Requires molecular oxygen, alpha-ketoglutarate and iron.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|P05050|ALKB_ECOLI Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Escherichia coli (strain K12) GN=alkB PE=1 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 97  LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGL 156
           L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A ++N +  
Sbjct: 67  LGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINRYAP 124

Query: 157 GDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
           G  L  H D  E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+  GE+R 
Sbjct: 125 GAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRL 184

Query: 217 CFHGECVLPGNF 228
            +HG   L   F
Sbjct: 185 FYHGIQPLKAGF 196

Dioxygenase that repairs alkylated DNA and RNA containing 3-methylcytosine or 1-methyladenine by oxidative demethylation. Has highest activity towards 3-methylcytosine. Has lower activity towards alkylated DNA containing ethenoadenine, and no detectable activity towards 1-methylguanine or 3-methylthymine. Accepts double-stranded and single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron. Provides extensive resistance to alkylating agents such as MMS and DMS (SN2 agents), but not to MMNG and MNU (SN1 agents).

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|P0CAT7|ALKB_CAUCR Alpha-ketoglutarate-dependent dioxygenase AlkB homolog OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=alkB PE=3 SV=1

 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 7/135 (5%)

Query: 94  LRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNY 153
           L  L W +    + +  R+     P   +P AL  L   L  P  P      P++ +VN 
Sbjct: 72  LGSLGWTSDARGYRYVDRHPETGRPWPDMPPALLDLWTVLGDPETP------PDSCLVNL 125

Query: 154 FGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGE 213
           +  G  +G H D  EAD   P++S+SLG  A+F +GG +R+DP  ++ L SGD   + G 
Sbjct: 126 YRDGARMGLHQDRDEADPRFPVLSISLGDTAVFRIGGVNRKDPTRSLRLASGDVCRLLGP 185

Query: 214 ARECFHG-ECVLPGN 227
           AR  FHG + +LPG+
Sbjct: 186 ARLAFHGVDRILPGS 200

Dioxygenase that repairs alkylated DNA and RNA containing 3-methylcytosine or 1-methyladenine by oxidative demethylation. Has highest activity towards 3-methylcytosine. Has lower activity towards alkylated DNA containing ethenoadenine, and no detectable activity towards 1-methylguanine or 3-methylthymine. Accepts double-stranded and single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron. Provides extensive resistance to alkylating agents such as MMS and DMS (SN2 agents), but not to MMNG and MNU (SN1 agents).

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|B8GWW6|ALKB_CAUCN Alpha-ketoglutarate-dependent dioxygenase AlkB homolog OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=alkB PE=3 SV=2

 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 7/135 (5%)

Query: 94  LRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNY 153
           L  L W +    + +  R+     P   +P AL  L   L  P  P      P++ +VN 
Sbjct: 72  LGSLGWTSDARGYRYVDRHPETGRPWPDMPPALLDLWTVLGDPETP------PDSCLVNL 125

Query: 154 FGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGE 213
           +  G  +G H D  EAD   P++S+SLG  A+F +GG +R+DP  ++ L SGD   + G 
Sbjct: 126 YRDGARMGLHQDRDEADPRFPVLSISLGDTAVFRIGGVNRKDPTRSLRLASGDVCRLLGP 185

Query: 214 ARECFHG-ECVLPGN 227
           AR  FHG + +LPG+
Sbjct: 186 ARLAFHGVDRILPGS 200

Dioxygenase that repairs alkylated DNA and RNA containing 3-methylcytosine or 1-methyladenine by oxidative demethylation. Has highest activity towards 3-methylcytosine. Has lower activity towards alkylated DNA containing ethenoadenine, and no detectable activity towards 1-methylguanine or 3-methylthymine. Accepts double-stranded and single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron. Provides extensive resistance to alkylating agents such as MMS and DMS (SN2 agents), but not to MMNG and MNU (SN1 agents).

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|P37462|ALKB_SALTY Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alkB PE=3 SV=2

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 97  LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGL 156
           L W T    + ++ R+     P   +P +   + ++ A  A      FQP+A ++N +  
Sbjct: 67  LGWTTDRHGYCYAVRDPLTDKPWPALPLSFASVCRQAAIAAG--YASFQPDACLINRYAP 124

Query: 157 GDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
           G  L  H D  E D   PIVS+SLG  A+F  GG  R DP   + L  GD V+  GE+R 
Sbjct: 125 GAKLSLHQDKDEPDLRAPIVSVSLGVPAVFQFGGLRRSDPIQRILLEHGDIVVWGGESRL 184

Query: 217 CFHGECVLPGNFIIM 231
            +HG   L   F  M
Sbjct: 185 FYHGIQPLKAGFHPM 199

Dioxygenase that repairs alkylated DNA and RNA containing 3-methylcytosine or 1-methyladenine by oxidative demethylation. Has highest activity towards 3-methylcytosine. Has lower activity towards alkylated DNA containing ethenoadenine, and no detectable activity towards 1-methylguanine or 3-methylthymine. Accepts double-stranded and single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron. Provides extensive resistance to alkylating agents such as MMS and DMS (SN2 agents), but not to MMNG and MNU (SN1 agents).

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
147833916	366	hypothetical protein VITISV_011566 [Viti	0.936	0.601	0.781	2e-99
225425416	360	PREDICTED: alpha-ketoglutarate-dependent	0.936	0.611	0.781	3e-99
255547710	333	Alkylated DNA repair protein alkB, putat	0.953	0.672	0.770	4e-99
224075559	353	predicted protein [Populus trichocarpa]	0.880	0.586	0.772	1e-94
449435087	363	PREDICTED: alpha-ketoglutarate-dependent	0.961	0.622	0.740	2e-93
15221095	345	alpha-ketoglutarate-dependent dioxygenas	0.868	0.591	0.733	3e-89
4835778	354	F25C20.6 [Arabidopsis thaliana]	0.880	0.584	0.723	3e-89
297849550	345	oxidoreductase [Arabidopsis lyrata subsp	0.868	0.591	0.728	6e-89
343172810	354	alpha-ketoglutarate-dependent dioxygenas	0.914	0.607	0.723	6e-88
343172808	354	alpha-ketoglutarate-dependent dioxygenas	0.914	0.607	0.723	2e-87

>gi|147833916|emb|CAN72697.1| hypothetical protein VITISV_011566 [Vitis vinifera]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/220 (78%), Positives = 189/220 (85%)

Query: 1   MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASS 60
           ++EQ +WIRESL SFPQP NRTNHNA YGPI DLF A KE+K+L+EEE S G LD  ++S
Sbjct: 102 VEEQGRWIRESLISFPQPYNRTNHNAIYGPIRDLFMAAKERKILVEEEDSSGGLDSLSNS 161

Query: 61  CTSNEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHK 120
             +N DA RWKFYEE+  + RG TCKS+ A VLLRKLRW TLGLQFDWSKRNYNVSLPH 
Sbjct: 162 SITNMDAERWKFYEENTVSSRGSTCKSISASVLLRKLRWSTLGLQFDWSKRNYNVSLPHN 221

Query: 121 KIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSL 180
           KIPDALC LAK +AAPAM  G+ FQPEAAIVNYFGLGD LGGHLDDMEADW+KPIVSMSL
Sbjct: 222 KIPDALCDLAKEMAAPAMSKGKVFQPEAAIVNYFGLGDMLGGHLDDMEADWTKPIVSMSL 281

Query: 181 GCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
           GCKAIFLLGGKSR+DPPLAMF+RSGD VLMAGEARECFHG
Sbjct: 282 GCKAIFLLGGKSRDDPPLAMFVRSGDVVLMAGEARECFHG 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425416|ref|XP_002277768.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB [Vitis vinifera] gi|297738457|emb|CBI27658.3| unnamed protein product [Vitis vinifera]

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 172/220 (78%), Positives = 189/220 (85%)

Query: 1   MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASS 60
           ++EQ +WIRESL SFPQP NRTNHNA YGPI DLF A KE+K+L+EEE S G LD  ++S
Sbjct: 96  VEEQGRWIRESLISFPQPYNRTNHNAIYGPIRDLFMAAKERKILVEEEDSSGGLDSLSNS 155

Query: 61  CTSNEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHK 120
             +N DA RWKFYEE+  + RG TCKS+ A VLLRKLRW TLGLQFDWSKRNYNVSLPH 
Sbjct: 156 SITNMDAERWKFYEENTVSSRGSTCKSISASVLLRKLRWSTLGLQFDWSKRNYNVSLPHN 215

Query: 121 KIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSL 180
           KIPDALC LAK +AAPAM  G+ FQPEAAIVNYFGLGD LGGHLDDMEADW+KPIVSMSL
Sbjct: 216 KIPDALCDLAKEMAAPAMSKGKVFQPEAAIVNYFGLGDMLGGHLDDMEADWTKPIVSMSL 275

Query: 181 GCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
           GCKAIFLLGGKSR+DPPLAMF+RSGD VLMAGEARECFHG
Sbjct: 276 GCKAIFLLGGKSRDDPPLAMFVRSGDVVLMAGEARECFHG 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547710|ref|XP_002514912.1| Alkylated DNA repair protein alkB, putative [Ricinus communis] gi|223545963|gb|EEF47466.1| Alkylated DNA repair protein alkB, putative [Ricinus communis]

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 181/235 (77%), Positives = 191/235 (81%), Gaps = 11/235 (4%)

Query: 1   MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASS 60
           + EQ  WIRESLTSFPQPPNRTNHNA YGPI DLF A KE K+L+E+E++  SLD   S 
Sbjct: 97  VDEQCLWIRESLTSFPQPPNRTNHNAIYGPIHDLFTAAKESKMLMEDENAPSSLDSNVS- 155

Query: 61  CTSNEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHK 120
             SN DAHRWKFYEE  A  RGK CKSV A  LLRKLRW TLGLQFDWSKRNYNVSL H 
Sbjct: 156 -VSNGDAHRWKFYEEHAALSRGKVCKSVTASNLLRKLRWSTLGLQFDWSKRNYNVSLLHN 214

Query: 121 KIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSL 180
           KIPDALCQLAKRLAAPAMP GEEF PEAAIVNYFG GDTLGGHLDDMEADWSKPIVSMSL
Sbjct: 215 KIPDALCQLAKRLAAPAMPRGEEFHPEAAIVNYFGSGDTLGGHLDDMEADWSKPIVSMSL 274

Query: 181 GCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPGNFIIMIWCI 235
           GCKAIFLLGGKSREDPPLAMFL+SGD +LMAGEARECFH          +  WC+
Sbjct: 275 GCKAIFLLGGKSREDPPLAMFLQSGDVMLMAGEARECFHE---------LNFWCV 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075559|ref|XP_002304683.1| predicted protein [Populus trichocarpa] gi|222842115|gb|EEE79662.1| predicted protein [Populus trichocarpa]

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 170/220 (77%), Positives = 180/220 (81%), Gaps = 13/220 (5%)

Query: 1   MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASS 60
           + EQ +WIRESL SFPQPPNRTNHNA YGPI DLF A KE+KVL+E+E+           
Sbjct: 104 VDEQCRWIRESLMSFPQPPNRTNHNAIYGPISDLFIAAKERKVLVEDENMPA-------- 155

Query: 61  CTSNEDAHRWKFYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHK 120
                +  RW F EED   LRGK+CK V A VLLRKLRW TLGLQFDWSKRNYNVSLPH 
Sbjct: 156 -----NTRRWSFCEEDSVLLRGKSCKPVSASVLLRKLRWSTLGLQFDWSKRNYNVSLPHN 210

Query: 121 KIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSL 180
           KIPD LCQLAK+LAAPAMP+GEEF PEAAIVNYF  GDTLGGHLDDMEADWSKPIVSMSL
Sbjct: 211 KIPDGLCQLAKKLAAPAMPVGEEFHPEAAIVNYFASGDTLGGHLDDMEADWSKPIVSMSL 270

Query: 181 GCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
           GCKAIFLLGGKSREDPPLAMFLRSGD VLMAGEARECFHG
Sbjct: 271 GCKAIFLLGGKSREDPPLAMFLRSGDVVLMAGEARECFHG 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435087|ref|XP_004135327.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB-like [Cucumis sativus] gi|449529170|ref|XP_004171574.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB-like [Cucumis sativus]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 171/231 (74%), Positives = 187/231 (80%), Gaps = 5/231 (2%)

Query: 1   MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLE-EESSIGSLDLGAS 59
           +QEQ QWIRESL  FPQPPNRTNHNA YGPI DLF A KE KVL+E +E S   LD    
Sbjct: 97  LQEQCQWIRESLMEFPQPPNRTNHNAIYGPIQDLFIAAKENKVLVEHDEISDFKLDSDVE 156

Query: 60  SCTSNEDAHRWKFYEED-IATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLP 118
              SN + H WKF EE+ +++ RG   KS+ A VLLRKLRW TLGLQFDWSKR+YN+SLP
Sbjct: 157 PSISNGNTHNWKFVEENTVSSRRGTAYKSIPASVLLRKLRWSTLGLQFDWSKRSYNISLP 216

Query: 119 HKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSM 178
           H KIP ALCQLAKR+AA AMP GEEF+PEAAIVNYF  GDTLGGHLDDMEADWSKPIVSM
Sbjct: 217 HNKIPSALCQLAKRMAAAAMPTGEEFKPEAAIVNYFASGDTLGGHLDDMEADWSKPIVSM 276

Query: 179 SLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPGNFI 229
           SLGCKAIFLLGGKSR+DPP+AMFLRSGD VLMAGEARECFHG   +P  FI
Sbjct: 277 SLGCKAIFLLGGKSRQDPPIAMFLRSGDVVLMAGEARECFHG---VPRIFI 324

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221095|ref|NP_172643.1| alpha-ketoglutarate-dependent dioxygenase alkB [Arabidopsis thaliana] gi|209572586|sp|Q9SA98.2|ALKBH_ARATH RecName: Full=Alpha-ketoglutarate-dependent dioxygenase alkB; AltName: Full=Alkylated DNA repair protein alkB homolog gi|124301166|gb|ABN04835.1| At1g11780 [Arabidopsis thaliana] gi|332190663|gb|AEE28784.1| alpha-ketoglutarate-dependent dioxygenase alkB [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 162/221 (73%), Positives = 181/221 (81%), Gaps = 17/221 (7%)

Query: 1   MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASS 60
           ++EQ +WI+ESLTSFPQPPNRTNHNA YGPIDDLF++ KE KVL++++            
Sbjct: 96  LKEQCKWIKESLTSFPQPPNRTNHNAIYGPIDDLFDSAKENKVLVQDD------------ 143

Query: 61  CTSNEDAHRWKFYEE-DIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPH 119
            T+N    +WKFYEE DI      +CKSV A VLLRKLRW TLGLQFDWSKRNY+VSLPH
Sbjct: 144 LTNN----KWKFYEEVDIEKATRSSCKSVSASVLLRKLRWSTLGLQFDWSKRNYDVSLPH 199

Query: 120 KKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMS 179
             IPDALCQLAK  AA AMP GEEF+PE AIVNYFG+GDTLGGHLDDMEADWSKPIVSMS
Sbjct: 200 NNIPDALCQLAKTHAAIAMPDGEEFRPEGAIVNYFGIGDTLGGHLDDMEADWSKPIVSMS 259

Query: 180 LGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
           LGCKAIFLLGGKS++DPP AM+LRSGD VLMAGEARECFHG
Sbjct: 260 LGCKAIFLLGGKSKDDPPHAMYLRSGDVVLMAGEARECFHG 300

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4835778|gb|AAD30244.1|AC007296_5 F25C20.6 [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 162/224 (72%), Positives = 182/224 (81%), Gaps = 17/224 (7%)

Query: 1   MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASS 60
           ++EQ +WI+ESLTSFPQPPNRTNHNA YGPIDDLF++ KE KVL++++            
Sbjct: 96  LKEQCKWIKESLTSFPQPPNRTNHNAIYGPIDDLFDSAKENKVLVQDD------------ 143

Query: 61  CTSNEDAHRWKFYEE-DIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPH 119
            T+N    +WKFYEE DI      +CKSV A VLLRKLRW TLGLQFDWSKRNY+VSLPH
Sbjct: 144 LTNN----KWKFYEEVDIEKATRSSCKSVSASVLLRKLRWSTLGLQFDWSKRNYDVSLPH 199

Query: 120 KKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMS 179
             IPDALCQLAK  AA AMP GEEF+PE AIVNYFG+GDTLGGHLDDMEADWSKPIVSMS
Sbjct: 200 NNIPDALCQLAKTHAAIAMPDGEEFRPEGAIVNYFGIGDTLGGHLDDMEADWSKPIVSMS 259

Query: 180 LGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECV 223
           LGCKAIFLLGGKS++DPP AM+LRSGD VLMAGEARECFHG  +
Sbjct: 260 LGCKAIFLLGGKSKDDPPHAMYLRSGDVVLMAGEARECFHGNLL 303

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849550|ref|XP_002892656.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297338498|gb|EFH68915.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 161/221 (72%), Positives = 182/221 (82%), Gaps = 17/221 (7%)

Query: 1   MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASS 60
           ++EQ +WI+ESLT+FPQPPNRTNHNA YGPI DLF++ K+ KVL++E+            
Sbjct: 96  LEEQCKWIKESLTNFPQPPNRTNHNAIYGPIADLFDSAKDNKVLVQED------------ 143

Query: 61  CTSNEDAHRWKFYEED-IATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPH 119
            T+N    +WKFYEED IA  +  +CKSV A VLLRKLRW TLGLQFDWSKRNY+VSLPH
Sbjct: 144 LTNN----KWKFYEEDDIAKAKQSSCKSVSASVLLRKLRWSTLGLQFDWSKRNYDVSLPH 199

Query: 120 KKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMS 179
             IPDALCQLAK  AA AMP GEEF+PE AIVNYFG+GDTLGGHLDDMEADWSKPIVSMS
Sbjct: 200 NNIPDALCQLAKTHAAIAMPDGEEFRPEGAIVNYFGIGDTLGGHLDDMEADWSKPIVSMS 259

Query: 180 LGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
           LGCKAIFLLGGKS++DPP AM+LRSGD VLMAGEARECFHG
Sbjct: 260 LGCKAIFLLGGKSKDDPPHAMYLRSGDVVLMAGEARECFHG 300

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172810|gb|AEL99108.1| alpha-ketoglutarate-dependent dioxygenase alkB, partial [Silene latifolia]

 Score =  329 bits (843), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 160/221 (72%), Positives = 174/221 (78%), Gaps = 6/221 (2%)

Query: 1   MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASS 60
           ++EQ QWIRESLTSFPQPPNRTNHNA YGPI+DLF A +E KVL+EEE     L    + 
Sbjct: 94  LEEQCQWIRESLTSFPQPPNRTNHNALYGPINDLFAAAQEGKVLVEEE-----LSPNVTQ 148

Query: 61  CTSNEDAHRWKFYEED-IATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPH 119
              N  A RW F  E    +L+G    S+ A VLLRKL W TLGLQFDWS+RNYNV LPH
Sbjct: 149 SLDNGQARRWTFSSESGNVSLKGSGGNSILASVLLRKLHWSTLGLQFDWSQRNYNVDLPH 208

Query: 120 KKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMS 179
            KIPD LCQLAK+LA PAMP+G+ F+PEAAIVNYF  GDTLGGHLDDME DWSKPIVSMS
Sbjct: 209 NKIPDKLCQLAKKLAVPAMPLGDNFKPEAAIVNYFASGDTLGGHLDDMELDWSKPIVSMS 268

Query: 180 LGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
           LGCK IFLLGGKSRED PLAMFLRSGD VLMAGEARECFHG
Sbjct: 269 LGCKGIFLLGGKSREDEPLAMFLRSGDVVLMAGEARECFHG 309

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172808|gb|AEL99107.1| alpha-ketoglutarate-dependent dioxygenase alkB, partial [Silene latifolia]

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 160/221 (72%), Positives = 174/221 (78%), Gaps = 6/221 (2%)

Query: 1   MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASS 60
           ++EQ QWIRESLTSFPQPPNRTNHNA YGPI+DLF A +E KVL+EEE     L    + 
Sbjct: 94  LEEQCQWIRESLTSFPQPPNRTNHNALYGPINDLFAAAQEGKVLVEEE-----LSPNVTQ 148

Query: 61  CTSNEDAHRWKFYEED-IATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPH 119
              N  A RW F  E    +L+G    S+ A VLLRKLRW TLGLQFDWS+RNYNV L H
Sbjct: 149 SLDNGQARRWTFSSESGNVSLKGSGGNSILASVLLRKLRWSTLGLQFDWSQRNYNVDLLH 208

Query: 120 KKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMS 179
            KIPD LCQLAK+LA PAMP+G+ F+PEAAIVNYF  GDTLGGHLDDME DWSKPIVSMS
Sbjct: 209 NKIPDKLCQLAKKLAVPAMPLGDNFKPEAAIVNYFASGDTLGGHLDDMELDWSKPIVSMS 268

Query: 180 LGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
           LGCK IFLLGGKSRED PLAMFLRSGD VLMAGEARECFHG
Sbjct: 269 LGCKGIFLLGGKSREDEPLAMFLRSGDVVLMAGEARECFHG 309

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2027347	345	AT1G11780 [Arabidopsis thalian	0.868	0.591	0.669	1.8e-71
DICTYBASE|DDB_G0285575	393	alkB "alkylated DNA repair pro	0.519	0.310	0.381	3.9e-27
ZFIN|ZDB-GENE-050522-196	367	alkbh1 "alkB, alkylation repai	0.634	0.405	0.354	2.7e-25
UNIPROTKB|Q5F3E4	371	ALKBH1 "Uncharacterized protei	0.608	0.385	0.380	2.2e-23
MGI|MGI:2384034	389	Alkbh1 "alkB, alkylation repai	0.676	0.408	0.357	3.8e-22
UNIPROTKB|E2RSQ8	389	ALKBH1 "Uncharacterized protei	0.638	0.385	0.370	8e-22
UNIPROTKB|Q13686	389	ALKBH1 "Alkylated DNA repair p	0.634	0.383	0.367	8e-22
FB|FBgn0065035	332	AlkB "AlkB" [Drosophila melano	0.510	0.361	0.382	2.5e-21
RGD|1308327	389	Alkbh1 "alkB, alkylation repai	0.676	0.408	0.351	4.4e-21
POMBASE|SPBC13G1.04c	302	abh1 "alkB homolog/2-OG-Fe(II)	0.634	0.493	0.311	1.5e-19

TAIR|locus:2027347 AT1G11780 [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 148/221 (66%), Positives = 162/221 (73%)

Query:     1 MQEQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAXXXXXXXXXXXSSIGSLDLGASS 60
             ++EQ +WI+ESLTSFPQPPNRTNHNA YGPIDDLF++                 DL    
Sbjct:    96 LKEQCKWIKESLTSFPQPPNRTNHNAIYGPIDDLFDSAKENKVLVQD-------DL---- 144

Query:    61 CTSNEDAHRWKFYEE-DIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPH 119
              T+N    +WKFYEE DI      +CKSV A VLLRKLRW TLGLQFDWSKRNY+VSLPH
Sbjct:   145 -TNN----KWKFYEEVDIEKATRSSCKSVSASVLLRKLRWSTLGLQFDWSKRNYDVSLPH 199

Query:   120 KKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFXXXXXXXXXXXXMEADWSKPIVSMS 179
               IPDALCQLAK  AA AMP GEEF+PE AIVNYF            MEADWSKPIVSMS
Sbjct:   200 NNIPDALCQLAKTHAAIAMPDGEEFRPEGAIVNYFGIGDTLGGHLDDMEADWSKPIVSMS 259

Query:   180 LGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220
             LGCKAIFLLGGKS++DPP AM+LRSGD VLMAGEARECFHG
Sbjct:   260 LGCKAIFLLGGKSKDDPPHAMYLRSGDVVLMAGEARECFHG 300

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0285575 alkB "alkylated DNA repair protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 242 (90.2 bits), Expect = 3.9e-27, Sum P(2) = 3.9e-27
 Identities = 50/131 (38%), Positives = 77/131 (58%)

Query:    93 LLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQP---EAA 149
             LL KL W TLG Q+ W+ R Y+    +++ PD L +L +++A     I  +F P   EAA
Sbjct:   211 LLDKLAWSTLGYQYQWTPRLYSEEF-YEEFPDDLQELVQKIA-----IATKFDPYVAEAA 264

Query:   150 IVNYFXXXXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVL 209
              VN++             E +  KPI+S+S G  A+FL+G ++R+  P+ +F+RSGD V+
Sbjct:   265 TVNFYSEDSIMGGHLDDAEQEMEKPIISISFGSTAVFLMGAETRDIAPVPLFIRSGDIVI 324

Query:   210 MAGEARECFHG 220
             M G +R C+HG
Sbjct:   325 MGGRSRYCYHG 335

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

ZFIN|ZDB-GENE-050522-196 alkbh1 "alkB, alkylation repair homolog 1 (E. coli)" [Danio rerio (taxid:7955)]

 Score = 250 (93.1 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
 Identities = 55/155 (35%), Positives = 84/155 (54%)

Query:    73 YEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKR 132
             +E  I  ++ K  +  +   LL KLRW TLG  +DW+ + Y+    +   P  L  L+ +
Sbjct:   129 WERSIDAIQRKGNRKREPKTLLEKLRWVTLGYHYDWNSKTYSPE-HYTPFPKELQSLSHK 187

Query:   133 LAAPAMPIG-EEFQPEAAIVNYFXXXXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGK 191
             +AA     G  EF  EA I+NY+             E D ++P++S S G  A+FLLGG 
Sbjct:   188 VAAAC---GFSEFDAEAGILNYYRSDSSLGIHVDESELDHTRPLLSYSFGQTAVFLLGGT 244

Query:   192 SREDPPLAMFLRSGDAVLMAGEARECFHG-ECVLP 225
              RED P A+F+ SGD ++M+G +R  +H   C++P
Sbjct:   245 KREDRPTALFMHSGDIMVMSGPSRLHYHAVPCIVP 279

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q5F3E4 ALKBH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 241 (89.9 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
 Identities = 56/147 (38%), Positives = 80/147 (54%)

Query:    80 LRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMP 139
             LR K     +   LL KLRW TLG  ++W  + Y+ +  H   P  L  L++++AA    
Sbjct:   136 LRRKGSSKCEPRSLLEKLRWVTLGYHYNWDTKKYSAN-HHTPFPSDLAFLSEQVAAACGF 194

Query:   140 IGEEFQPEAAIVNYFXXXXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLA 199
              G  FQ +A I+NY+             E D S+P++S S G  +IFLLGG  RE+ P A
Sbjct:   195 RG--FQAQAGILNYYHFDSSLGIHVDESELDHSRPLLSFSFGQSSIFLLGGLKREEAPTA 252

Query:   200 MFLRSGDAVLMAGEARECFHG-ECVLP 225
             MF+ SGD ++M+G +R  +H    VLP
Sbjct:   253 MFMHSGDIMVMSGFSRLLYHAVPRVLP 279

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001890 "placenta development" evidence=IEA

GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA

GO:0005719 "nuclear euchromatin" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0042056 "chemoattractant activity" evidence=IEA

GO:0042245 "RNA repair" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0048589 "developmental growth" evidence=IEA

GO:0070579 "methylcytosine dioxygenase activity" evidence=IEA

GO:0070989 "oxidative demethylation" evidence=IEA

GO:0080111 "DNA demethylation" evidence=IEA

MGI|MGI:2384034 Alkbh1 "alkB, alkylation repair homolog 1 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 235 (87.8 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
 Identities = 60/168 (35%), Positives = 84/168 (50%)

Query:    64 NEDAHRWK-----FYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLP 118
             N D H  K      +E+    LR K     +   LL +LRW TLG  ++W  + Y+    
Sbjct:   130 NLDKHMTKEETQGLWEQSKEVLRSKEVTKRRPRSLLERLRWVTLGYHYNWDSKKYSAD-H 188

Query:   119 HKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFXXXXXXXXXXXXMEADWSKPIVSM 178
             +   P  L  L++++A      G  FQ EA I+NY+             E D SKP++S 
Sbjct:   189 YTPFPSDLAFLSEQVATACGFQG--FQAEAGILNYYRLDSTLGIHVDRSELDHSKPLLSF 246

Query:   179 SLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG-ECVLP 225
             S G  AIFLLGG  R++ P AMF+ SGD ++M+G +R   H    VLP
Sbjct:   247 SFGQSAIFLLGGLKRDEAPTAMFMHSGDIMVMSGFSRLLNHAVPRVLP 294

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001764 "neuron migration" evidence=IDA

GO:0001890 "placenta development" evidence=IMP

GO:0003824 "catalytic activity" evidence=IEA

GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005719 "nuclear euchromatin" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0006281 "DNA repair" evidence=ISO

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=ISO

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IMP

GO:0031175 "neuron projection development" evidence=IDA

GO:0042056 "chemoattractant activity" evidence=IDA

GO:0042245 "RNA repair" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048589 "developmental growth" evidence=IMP

GO:0050918 "positive chemotaxis" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070579 "methylcytosine dioxygenase activity" evidence=ISO

GO:0070989 "oxidative demethylation" evidence=ISO

GO:0080111 "DNA demethylation" evidence=ISO

UNIPROTKB|E2RSQ8 ALKBH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 234 (87.4 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
 Identities = 57/154 (37%), Positives = 81/154 (52%)

Query:    73 YEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKR 132
             +E+    LR K     +   LL KLRW TLG  ++W  + Y+    +   P  L  L+++
Sbjct:   144 WEQSKELLRYKEVNKRRPRSLLEKLRWVTLGYHYNWDSKKYSAD-HYTPFPSDLAFLSEQ 202

Query:   133 LAAPAMPIGEEFQPEAAIVNYFXXXXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGKS 192
             +AA     G  F+ EA I+NY+             E D SKP++S S G  AIFLLGG  
Sbjct:   203 VAAACGFQG--FRAEAGILNYYRLDSTLGIHVDRSELDHSKPLLSFSFGQSAIFLLGGLK 260

Query:   193 REDPPLAMFLRSGDAVLMAGEARECFHG-ECVLP 225
             R++ P AMF+ SGD ++M+G +R   H    VLP
Sbjct:   261 RDEAPTAMFMHSGDIMVMSGFSRLLNHAVPRVLP 294

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|Q13686 ALKBH1 "Alkylated DNA repair protein alkB homolog 1" [Homo sapiens (taxid:9606)]

 Score = 234 (87.4 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
 Identities = 57/155 (36%), Positives = 83/155 (53%)

Query:    73 YEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKR 132
             +E+    LR K     +   LL KLRW T+G  ++W  + Y+    +   P  L  L+++
Sbjct:   144 WEQSKEFLRYKEATKRRPRSLLEKLRWVTVGYHYNWDSKKYSAD-HYTPFPSDLGFLSEQ 202

Query:   133 LAAPAMPIG-EEFQPEAAIVNYFXXXXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGK 191
             +AA     G E+F+ EA I+NY+             E D SKP++S S G  AIFLLGG 
Sbjct:   203 VAAAC---GFEDFRAEAGILNYYRLDSTLGIHVDRSELDHSKPLLSFSFGQSAIFLLGGL 259

Query:   192 SREDPPLAMFLRSGDAVLMAGEARECFHG-ECVLP 225
              R++ P AMF+ SGD ++M+G +R   H    VLP
Sbjct:   260 QRDEAPTAMFMHSGDIMIMSGFSRLLNHAVPRVLP 294

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001890 "placenta development" evidence=IEA

GO:0005719 "nuclear euchromatin" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0042056 "chemoattractant activity" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0048589 "developmental growth" evidence=IEA

GO:0080111 "DNA demethylation" evidence=IDA

GO:0008198 "ferrous iron binding" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IDA

GO:0006281 "DNA repair" evidence=IDA

GO:0070989 "oxidative demethylation" evidence=IDA

GO:0042245 "RNA repair" evidence=IDA

GO:0070579 "methylcytosine dioxygenase activity" evidence=IDA

GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IDA

FB|FBgn0065035 AlkB "AlkB" [Drosophila melanogaster (taxid:7227)]

 Score = 222 (83.2 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 47/123 (38%), Positives = 70/123 (56%)

Query:    97 LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFXX 156
             +RW T G   +W  + Y+  +     P+ L  L   L A A+   + F+PEAAIVNY+  
Sbjct:   141 MRWTTFGYHHNWDTKIYDEEM-QSPFPEDLSSLCG-LFAQALGYAD-FKPEAAIVNYYPV 197

Query:   157 XXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
                        E + S P+ S S G  AIFL+GG+S E+ P A++L+SGD ++M+GE+R 
Sbjct:   198 GSTLSGHTDHSEPNKSAPLFSFSFGQTAIFLIGGRSLEEKPTAIYLQSGDVMIMSGESRL 257

Query:   217 CFH 219
             C+H
Sbjct:   258 CYH 260

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|1308327 Alkbh1 "alkB, alkylation repair homolog 1 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 227 (85.0 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
 Identities = 59/168 (35%), Positives = 84/168 (50%)

Query:    64 NEDAHRWK-----FYEEDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLP 118
             N D H  K      +E+    LR K     +   LL +LRW TLG  ++W  + Y+    
Sbjct:   130 NLDKHMTKEETQGLWEQSKEFLRSKDKTKRRPRSLLERLRWVTLGYHYNWDSKKYSAD-H 188

Query:   119 HKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFXXXXXXXXXXXXMEADWSKPIVSM 178
             +   P  L  L++++A      G  F+ EA I+NY+             E D SKP++S 
Sbjct:   189 YTPFPSDLAFLSEQVATACGFQG--FRAEAGILNYYRLDSTLGIHVDRSELDHSKPLLSF 246

Query:   179 SLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG-ECVLP 225
             S G  AIFLLGG  R++ P AMF+ SGD ++M+G +R   H    VLP
Sbjct:   247 SFGQSAIFLLGGLKRDEAPTAMFMHSGDIMVMSGFSRLLNHAVPRVLP 294

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001764 "neuron migration" evidence=ISO

GO:0001890 "placenta development" evidence=ISO

GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=ISO

GO:0005719 "nuclear euchromatin" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA;ISO

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=ISO

GO:0008198 "ferrous iron binding" evidence=ISO

GO:0010468 "regulation of gene expression" evidence=ISO

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0030154 "cell differentiation" evidence=ISO

GO:0031175 "neuron projection development" evidence=ISO

GO:0042056 "chemoattractant activity" evidence=ISO

GO:0042245 "RNA repair" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0048589 "developmental growth" evidence=ISO

GO:0050918 "positive chemotaxis" evidence=ISO

GO:0070579 "methylcytosine dioxygenase activity" evidence=ISO

GO:0070989 "oxidative demethylation" evidence=ISO

GO:0080111 "DNA demethylation" evidence=ISO

POMBASE|SPBC13G1.04c abh1 "alkB homolog/2-OG-Fe(II) oxygenase family Abh1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 206 (77.6 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 48/154 (31%), Positives = 78/154 (50%)

Query:    70 WK-FYE---EDIATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDA 125
             W+ +Y    E I    G+T       ++ +KLRW TLG Q+DW+ + Y         P  
Sbjct:   109 WRRYYNGDGESIIDGLGETKPLTVDRLVHKKLRWVTLGEQYDWTTKEYPDPSKSPGFPKD 168

Query:   126 LCQLAKRLAAPAMPIGEEFQPEAAIVNYFXXXXXXXXXXXXMEADWSKPIVSMSLGCKAI 185
             L    +++   +      ++ EAAIVN++             E D + P++S+S+G   I
Sbjct:   169 LGDFVEKVVKESTDF-LHWKAEAAIVNFYSPGDTLSAHIDESEEDLTLPLISLSMGLDCI 227

Query:   186 FLLGGKSREDPPLAMFLRSGDAVLMAGEARECFH 219
             +L+G +SR + P A+ L SGD V+M G +R+ FH
Sbjct:   228 YLIGTESRSEKPSALRLHSGDVVIMTGTSRKAFH 261

GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=ISS

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SA98	ALKBH_ARATH	1, ., 1, 4, ., 1, 1, ., -	0.7330	0.8680	0.5913	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.11	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
pfam13532	190	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su	7e-42
TIGR00568	169	TIGR00568, alkb, DNA alkylation damage repair prot	2e-38
PRK15401	213	PRK15401, PRK15401, alpha-ketoglutarate-dependent	2e-22
COG3145	194	COG3145, AlkB, Alkylated DNA repair protein [DNA r	9e-21

>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily

 Score =  140 bits (355), Expect = 7e-42
 Identities = 56/143 (39%), Positives = 75/143 (52%), Gaps = 5/143 (3%)

Query: 78  ATLRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPA 137
            T  GK             L W T G  + +S        P    P  L QLA+RLAA A
Sbjct: 31  MTPGGKPMSVRM--TNCGPLGWVTDGPGYRYSGTPVT-GEPWPPFPAVLLQLAERLAAAA 87

Query: 138 MPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPP 197
            P    F+P A +VN++  G  +G H D  E D+  PIVS+SLG  A+F  GGK+R+DP 
Sbjct: 88  GP--PGFEPNACLVNFYRPGARMGLHQDKDELDFGAPIVSVSLGDPALFRFGGKTRDDPT 145

Query: 198 LAMFLRSGDAVLMAGEARECFHG 220
           +A+ L SGD ++M G +R  +HG
Sbjct: 146 IALPLESGDVLVMGGPSRLAYHG 168

Length = 190

>gnl|CDD|129659 TIGR00568, alkb, DNA alkylation damage repair protein AlkB

 Score =  131 bits (330), Expect = 2e-38
 Identities = 54/128 (42%), Positives = 73/128 (57%), Gaps = 2/128 (1%)

Query: 93  LLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVN 152
            L KL W T G  + +S ++   + P   +P  L  L +R+A  A     +FQP+A +VN
Sbjct: 43  NLGKLGWTTHGQGYLYSPKDPQTNKPWPAMPQDLGDLCERVATAAG--FPDFQPDACLVN 100

Query: 153 YFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAG 212
            +  G TL  H D  E D   P++S+SLG  AIFL+GG  R DPP  + L SGD V+M G
Sbjct: 101 RYAPGATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGG 160

Query: 213 EARECFHG 220
           E+R  FHG
Sbjct: 161 ESRLAFHG 168

Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999) [DNA metabolism, DNA replication, recombination, and repair]. Length = 169

>gnl|CDD|237957 PRK15401, PRK15401, alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional

 Score = 90.7 bits (226), Expect = 2e-22
 Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 6/105 (5%)

Query: 122 IPDALCQLAKRLAAPAMPIG-EEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSL 180
           +P +   LA+R AA A   G   FQP+A ++N +  G  L  H D  E D+  PIVS+SL
Sbjct: 93  MPASFLALAQRAAAAA---GFPGFQPDACLINRYAPGAKLSLHQDKDERDFRAPIVSVSL 149

Query: 181 GCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLP 225
           G  A+F  GG  R DP   + L  GD V+  G +R  +HG  +LP
Sbjct: 150 GLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPSRLRYHG--ILP 192

Length = 213

>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair]

 Score = 85.9 bits (213), Expect = 9e-21
 Identities = 40/125 (32%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 95  RKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYF 154
           R L W T    + +S R+     P   +      L      P         PEA +VN +
Sbjct: 60  RLLGWVTDRRGYRYSLRSPLTGKPWPPLLALFHDLFGAAGYPF------EGPEAVLVNRY 113

Query: 155 GLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEA 214
             G ++G H D  E D   P+ S+SLG   IF L G+ R  P L + L  GD V+M G +
Sbjct: 114 RPGASIGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRRRRGPGLRLRLEHGDVVVMGGPS 173

Query: 215 RECFH 219
           R  +H
Sbjct: 174 RLAWH 178

Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
TIGR00568	169	alkb DNA alkylation damage repair protein AlkB. Pr	100.0
PRK15401	213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	100.0
PF13532	194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	99.97
KOG2731	378	consensus DNA alkylation damage repair protein [RN	99.96
COG3145	194	AlkB Alkylated DNA repair protein [DNA replication	99.96
KOG4176	323	consensus Uncharacterized conserved protein [Funct	99.39
KOG3200	224	consensus Uncharacterized conserved protein [Funct	99.05
KOG2731	378	consensus DNA alkylation damage repair protein [RN	97.22
PF12933	253	FTO_NTD: FTO catalytic domain; InterPro: IPR024367	96.88
PF03171	98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	96.66
KOG3959	306	consensus 2-Oxoglutarate- and iron-dependent dioxy	96.51
PF13640	100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	96.29
smart00702	178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	93.24
PRK05467	226	Fe(II)-dependent oxygenase superfamily protein; Pr	84.4
PF09859	173	Oxygenase-NA: Oxygenase, catalysing oxidative meth	82.99
PF12851	171	Tet_JBP: Oxygenase domain of the 2OGFeDO superfami	80.21

>TIGR00568 alkb DNA alkylation damage repair protein AlkB

Probab=100.00  E-value=4e-44  Score=302.35  Aligned_cols=130  Identities=42%  Similarity=0.664  Sum_probs=120.1

Q ss_pred             hhhccceeeEeeeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCc
Q 026678           90 AGVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEA  169 (235)
Q Consensus        90 ~~~ll~klRW~tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~  169 (235)
                      ++.+.+||||++.|++|+|+++.|....++++||++|.+|++++++.+  +..++.||+||||||++||+||||+|++|.
T Consensus        40 pr~~~~~l~W~~~g~~Y~ys~~~~~~~~~~p~~P~~L~~L~~~v~~~~--g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~  117 (169)
T TIGR00568        40 AMTNLGKLGWTTHGQGYLYSPKDPQTNKPWPAMPQDLGDLCERVATAA--GFPDFQPDACLVNRYAPGATLSLHQDRDEP  117 (169)
T ss_pred             hhhhcccceEEcCCCcccCCCcccCCCCCCCCCCHHHHHHHHHHHHHh--CCCCCCCCEEEEEeecCCCccccccccccc
Confidence            366778999999999999999999766678789999999999998776  455689999999999999999999998888


Q ss_pred             CCCCCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeecc
Q 026678          170 DWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGE  221 (235)
Q Consensus       170 ~~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~V  221 (235)
                      +++.||||||||++|+|+|+++++++.+.+|.|+|||+|||+|++|++||||
T Consensus       118 ~~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~sR~~~Hgv  169 (169)
T TIGR00568       118 DLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGESRLAFHGV  169 (169)
T ss_pred             cCCCCEEEEeCCCCEEEEecCCcCCCceEEEEeCCCCEEEECCchhccccCC
Confidence            7889999999999999999999888889999999999999999999999998

Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional

Probab=100.00  E-value=8.4e-36  Score=259.77  Aligned_cols=131  Identities=35%  Similarity=0.520  Sum_probs=114.5

Q ss_pred             ccceeeEeeeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcCCC
Q 026678           93 LLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWS  172 (235)
Q Consensus        93 ll~klRW~tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~  172 (235)
                      -+.++.|++-...|+|+........||++||++|.+|+++++..+  ++.+|.||+||||||++|++||||+|++|.+++
T Consensus        64 ~~G~~~W~~d~~~YrYs~~~~~~~~pwp~~P~~l~~L~~~~~~~~--~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~  141 (213)
T PRK15401         64 NCGALGWVTDRRGYRYSPIDPLTGKPWPAMPASFLALAQRAAAAA--GFPGFQPDACLINRYAPGAKLSLHQDKDERDFR  141 (213)
T ss_pred             ccccceEecCCCCcccCCcCCCCCCCCCCchHHHHHHHHHHHHHc--CCCCCCCCEEEEEeccCcCccccccCCCcccCC
Confidence            356789998666777776542234589999999999999998776  456789999999999999999999998787788


Q ss_pred             CCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeeccCCCC
Q 026678          173 KPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLP  225 (235)
Q Consensus       173 ~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~VP~~~  225 (235)
                      .||||||||++|+|.||+.++++.+.+|.|+|||||||+|++|++|||||+++
T Consensus       142 ~pI~SvSLG~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~  194 (213)
T PRK15401        142 APIVSVSLGLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPSRLRYHGILPLK  194 (213)
T ss_pred             CCEEEEeCCCCeEEEecccCCCCceEEEEeCCCCEEEECchHhheeccCCcCC
Confidence            99999999999999999988878889999999999999999999999999654

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A

Probab=99.97  E-value=2.5e-30  Score=217.86  Aligned_cols=135  Identities=31%  Similarity=0.537  Sum_probs=104.3

Q ss_pred             hhccceeeEeeeCceeeeCCC-cccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCc
Q 026678           91 GVLLRKLRWCTLGLQFDWSKR-NYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEA  169 (235)
Q Consensus        91 ~~ll~klRW~tlG~~Ydw~~~-~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~  169 (235)
                      +.+.++++|.+.|..|+|+.+ .+. ..+++++|++|.++.+++.+... ....+.||+||||+|.+|++|++|+|+++.
T Consensus        42 ~~~~~~~~~~~~~~~y~y~~~~~~~-~~~~~~~p~~l~~~~~~~~~~~~-~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~  119 (194)
T PF13532_consen   42 RKLCGGLSWVGDGPSYRYSGKRPVR-SKPWPPFPEWLSRLLERLVEATG-IPPGWRPNQCLINYYRDGSGIGPHSDDEEY  119 (194)
T ss_dssp             CE-SSEEEEEECT--CCCTCC-EEC-CCEBSCCHHHHHHHHHHHHHHHT--SHSS--SEEEEEEESSTT-EEEE---TTC
T ss_pred             eecceeeEEECCCCCeEcCCccccC-CCCCCCccHHHHHHHHHHHHHhc-cccCCCCCEEEEEecCCCCCcCCCCCcccc
Confidence            346789999999999999987 554 35689999999999999987552 134689999999999999999999999876


Q ss_pred             CCCCCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeeccCCCCCc
Q 026678          170 DWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPGN  227 (235)
Q Consensus       170 ~~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~VP~~~~~  227 (235)
                      +++.||+|||||++|+|.|+++...+....+.|.+||++||+|++|..|||||+.+..
T Consensus       120 ~~~~~I~slSLG~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~~~  177 (194)
T PF13532_consen  120 GFGPPIASLSLGSSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEARYDWHGIPPVKKD  177 (194)
T ss_dssp             -CCSEEEEEEEES-EEEEEEECGGTS-EEEEEE-TTEEEEEETTHHHHEEEE-S-SCE
T ss_pred             cCCCcEEEEEEccCceEEEeeccCCCccEEEEcCCCCEEEeChHHhhheeEcccccCC
Confidence            6789999999999999999998777789999999999999999999988999976653

...

>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]

Probab=99.96  E-value=5.8e-30  Score=234.63  Aligned_cols=195  Identities=34%  Similarity=0.414  Sum_probs=147.2

Q ss_pred             hHHHHHHHHHhhCCCCCCCCCCccccCCchhhHHHhhhhhhhhhhhcccCccCCCCCCCC--Cccccccceeeccch-hc
Q 026678            3 EQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASSCT--SNEDAHRWKFYEEDI-AT   79 (235)
Q Consensus         3 ~Q~~wi~~~L~~y~~~Pn~tNl~~~y~p~~~lw~~~~~~~~l~~~~~~~~~~~~g~~~~~--~~~~~~~w~~~~~~~-~~   79 (235)
                      +|..||.+|    |+.|++++|..+++|+.+  +...                  .+.|.  .+-....|....+.+ +.
T Consensus        92 g~~k~~lqs----~~~~~s~~~~v~qe~e~~--~~~a------------------~~~c~l~~~~sd~t~~~~~s~ss~~  147 (378)
T KOG2731|consen   92 GDNKLILQS----PQLPRSGGHFVIQEPENK--KSGA------------------PNYCLLVNRMSDVTLQDLESVSSES  147 (378)
T ss_pred             ccccccccC----CCcCcccceeeeeccccc--cccC------------------cccccccccccccccccccccchhh
Confidence            455666663    899999999999988642  1111                  11111  111112233222222 34


Q ss_pred             ccCccccccchhhccceeeEeeeCceeeeCCCccc--CCCCCCCChHHHHHHHHHHHhccCCCCCCCCCce-EEeeecCC
Q 026678           80 LRGKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYN--VSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEA-AIVNYFGL  156 (235)
Q Consensus        80 ~~~~~~~~~~~~~ll~klRW~tlG~~Ydw~~~~Y~--~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a-~iVN~Y~~  156 (235)
                      +...+++++.++.+++||||+|+|++|||+++.|-  -+..+.-+|++|..+.+.-++++. ++.++...+ +|+|||..
T Consensus       148 ~~~~e~~sv~~~r~~~KlRw~T~G~~~dw~s~~~~~~~s~k~~~~~~~ll~~~~~~~~~a~-~~~~~~~~~Gli~nYlsi  226 (378)
T KOG2731|consen  148 DQNVELKSVRNHRLLPKLRWVTLGNQYDWSSKDIFIFLSKKHYNIKPSLLGLLREKVKAAK-GFSHIVIRPGLIKNYLSI  226 (378)
T ss_pred             hccccceeccchhhhhhhcccccccccCCccccccccccccCCCCChHHhhhhhhhhhhhc-CccceeccCcceeeeccc
Confidence            55677889999999999999999999999999922  233466677777776665554443 444555554 59999999


Q ss_pred             CCCcCcccCCCCcCCCCCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeeccC
Q 026678          157 GDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGEC  222 (235)
Q Consensus       157 Gd~lg~H~D~~E~~~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~VP  222 (235)
                      +++|+.|.|..|++...|++|+|||++|||++|...+++.+.+++|++||+++|+|.+|.++||||
T Consensus       227 ~~tl~ih~d~reld~~~pf~s~s~g~~ai~lLg~m~l~e~p~p~~lrsGdv~im~Gfsrlv~haIp  292 (378)
T KOG2731|consen  227 DDTLGIHLDCRELDLSKPFYSPSLGQGAILLLGMMCLGENPDPMTLRSGDVVIMDGFSRLVEHAIP  292 (378)
T ss_pred             CcEEEEEeehhhcccCCccccccccccceeeecccccCCCCCccccccCceEeecchHHHHhhccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999

>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]

Probab=99.96  E-value=1.4e-28  Score=211.50  Aligned_cols=123  Identities=32%  Similarity=0.406  Sum_probs=104.5

Q ss_pred             eeeEeeeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcCCCCCe
Q 026678           96 KLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPI  175 (235)
Q Consensus        96 klRW~tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~~PI  175 (235)
                      .+.|++.=..|.|+.+.+....+++++|..+.++..    ++  ++..+.|||||||+|++||+||||+|.+|++...||
T Consensus        61 ~~~W~~d~~gy~y~~~~p~~~~p~p~l~~~~~~~~~----~~--g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v  134 (194)
T COG3145          61 LLGWVTDRRGYRYSLRSPLTGKPWPPLLALFHDLFG----AA--GYPFEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPV  134 (194)
T ss_pred             ccceecccccccccccccCCCCCCCccHHHHHHHHH----Hh--cCCCCChhheeEEeccCCCccccccccccccCCCce
Confidence            888998855577777777766666666676666665    33  456789999999999999999999999988777789


Q ss_pred             EEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEccccccee-eccCCC
Q 026678          176 VSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECF-HGECVL  224 (235)
Q Consensus       176 vSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~-H~VP~~  224 (235)
                      ||||||++|+|.|+++.+.+..+++.|+|||||||+|++|+.| |.||+.
T Consensus       135 ~slSLg~~~~F~~~~~~r~~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~  184 (194)
T COG3145         135 ASLSLGAPCIFRLRGRRRRGPGLRLRLEHGDVVVMGGPSRLAWHHIIPKT  184 (194)
T ss_pred             EEEecCCCeEEEeccccCCCCceeEEecCCCEEEecCCcccccccccccc
Confidence            9999999999999999887889999999999999999999988 688843

>KOG4176 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=2.1e-12  Score=119.07  Aligned_cols=124  Identities=24%  Similarity=0.381  Sum_probs=101.5

Q ss_pred             cceeeEeeeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcCCCC
Q 026678           94 LRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSK  173 (235)
Q Consensus        94 l~klRW~tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~~  173 (235)
                      .++++...||+-|+|.+..-+...+..|+|..+..+.+++...-.  ... +||+|+||+|.+|++|..|.|++  .|..
T Consensus       160 gk~R~~iq~G~~f~y~~~~~d~~~~~~piPs~~~~ii~rlv~~~~--ip~-~pd~~~iN~Ye~G~~i~ph~~~~--~F~~  234 (323)
T KOG4176|consen  160 GKHREVIQLGYPFDYRTNNVDESKPVDPIPSLFKSIIDRLVSWRV--IPE-RPDQCTINFYEPGDGIPPHIDHS--AFLD  234 (323)
T ss_pred             ccceeeeecCceeccCCCcccccCccCCCchHHHHHHHHhhhhcc--CCC-CCCeeEEEeeCCCCCCCCCCChH--HhcC
Confidence            566677789999999998877655578999999999999987642  233 79999999999999999999765  3789


Q ss_pred             CeEEEccCCceEEEeeCCCCCC------CCEEEEcCCCcEEEEcccc-cceeeccC
Q 026678          174 PIVSMSLGCKAIFLLGGKSRED------PPLAMFLRSGDAVLMAGEA-RECFHGEC  222 (235)
Q Consensus       174 PIvSiSLG~~~iF~~~~~~~~~------~~~~l~L~sGDvlvM~G~s-R~~~H~VP  222 (235)
                      ||+|+||-++|+|.||+....+      ....+.|+-|+++||.|.+ -..-|.++
T Consensus       235 Pi~slS~lSe~~m~Fg~~~~~~~~~~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~  290 (323)
T KOG4176|consen  235 PISSLSFLSECTMEFGHGLLSDNIGNFRGSLSLPLRYGSVLVIRGRSADVAPHCIR  290 (323)
T ss_pred             ceEEEEeecceeEEecccccccCccccccccccccccCeEEEeCCCcccccccccC
Confidence            9999999999999999852211      2478899999999999987 55556665

>KOG3200 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=1e-09  Score=93.57  Aligned_cols=100  Identities=15%  Similarity=0.261  Sum_probs=78.4

Q ss_pred             CCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcCCCCCeEEEccCCceEEEeeCCCC-----
Q 026678          119 HKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSR-----  193 (235)
Q Consensus       119 ~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~~PIvSiSLG~~~iF~~~~~~~-----  193 (235)
                      ...+|+||..+..++....  -+.+ ..|.+|||.|.+|++|+.|.|-.-  +-.-|..||||+.+++.|-..-|     
T Consensus        63 peelP~wLq~~v~kinnlg--lF~s-~~NHVLVNeY~pgqGImPHtDGPa--f~piVstiSlGsh~vldf~~p~r~e~~d  137 (224)
T KOG3200|consen   63 PEELPPWLQYYVDKINNLG--LFKS-PANHVLVNEYLPGQGIMPHTDGPA--FHPIVSTISLGSHTVLDFYDPVRQEVND  137 (224)
T ss_pred             ccccCHHHHHHHHHhhccc--ccCC-CcceeEeecccCCCCcCcCCCCCc--ccceEEEEecCCceEEecccccccccCC
Confidence            4689999999999998654  3444 789999999999999999999642  33335689999999999975211     


Q ss_pred             -----CC---CCEEEEcCCCcEEEEcccccc-eeeccCC
Q 026678          194 -----ED---PPLAMFLRSGDAVLMAGEARE-CFHGECV  223 (235)
Q Consensus       194 -----~~---~~~~l~L~sGDvlvM~G~sR~-~~H~VP~  223 (235)
                           +.   ..+.+.|++.++||+.+.+=. ..|||.-
T Consensus       138 ~te~~dqp~R~~fsllleprslLilkd~aYtd~LHgIs~  176 (224)
T KOG3200|consen  138 GTESKDQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISD  176 (224)
T ss_pred             ccccCCCCccceeeeeeccceEEEEcCcHHHHHHhhccc
Confidence                 11   246899999999999999955 4499974

>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]

Probab=97.22  E-value=0.00012  Score=68.40  Aligned_cols=61  Identities=36%  Similarity=0.589  Sum_probs=52.1

Q ss_pred             CCceEEeeecCCCCCcCcccCCCCcC----CCCCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeec
Q 026678          145 QPEAAIVNYFGLGDTLGGHLDDMEAD----WSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG  220 (235)
Q Consensus       145 ~p~a~iVN~Y~~Gd~lg~H~D~~E~~----~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~  220 (235)
                      -|+.||||||..--+|+.|.|..|..    -+-||++||.|. +-|+++... |+..              |.+|..+||
T Consensus       313 lp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~~-d~~~--------------~~sr~~f~~  376 (378)
T KOG2731|consen  313 LPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQR-DEDK--------------GRSRMVFHG  376 (378)
T ss_pred             CcccccccccCCCcccccchhHHHHHHhhhcCceeEEeccCc-cccccCchh-hhhh--------------hhheecccC
Confidence            78999999999999999999997742    246899999999 999999864 4443              889999999


Q ss_pred             c
Q 026678          221 E  221 (235)
Q Consensus       221 V  221 (235)
                      |
T Consensus       377 ~  377 (378)
T KOG2731|consen  377 V  377 (378)
T ss_pred             C
Confidence            7

>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family

Probab=96.88  E-value=0.0014  Score=58.78  Aligned_cols=78  Identities=27%  Similarity=0.330  Sum_probs=41.5

Q ss_pred             CCCCceEEeeecCC----------------C-CCcCcccCCCCcCCCCCeEEEccCC----ceEEEeeCC--CCCCCCEE
Q 026678          143 EFQPEAAIVNYFGL----------------G-DTLGGHLDDMEADWSKPIVSMSLGC----KAIFLLGGK--SREDPPLA  199 (235)
Q Consensus       143 ~~~p~a~iVN~Y~~----------------G-d~lg~H~D~~E~~~~~PIvSiSLG~----~~iF~~~~~--~~~~~~~~  199 (235)
                      ...+|..||||+.+                | -.+|||.|..=. ..++|+-.|--+    +..-.++=+  .-+.+.+.
T Consensus       135 ~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL~-~~StVAVY~~s~~~~~~~~W~VgLka~D~~tP~L~  213 (253)
T PF12933_consen  135 SCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENLV-ERSTVAVYSYSCEEPEPADWHVGLKAWDIETPGLA  213 (253)
T ss_dssp             -----EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB--TT--EEEEEEE-----TTSEEEEEETT--SS-EEE
T ss_pred             ceeeehhhhhccCcccccccccccccccCCcceeeeeccccccc-cccceEEEEecCCCCCCCceEEEEeecCCCCCeeE
Confidence            45789999999998                2 348999996422 346776555444    234443322  22346789


Q ss_pred             EEcCCCcEEEEcccc-cceeecc
Q 026678          200 MFLRSGDAVLMAGEA-RECFHGE  221 (235)
Q Consensus       200 l~L~sGDvlvM~G~s-R~~~H~V  221 (235)
                      +.|++||...|-+.- ..+.|+|
T Consensus       214 vPL~sgd~Y~Mldd~N~tHqH~V  236 (253)
T PF12933_consen  214 VPLRSGDCYYMLDDFNATHQHCV  236 (253)
T ss_dssp             EEE-TT-EEEE-TTHHHHEEEEE
T ss_pred             EeccCCCeEEEccccchhhHHHH
Confidence            999999999999998 7788887

This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit

Probab=96.66  E-value=0.0018  Score=48.71  Aligned_cols=84  Identities=14%  Similarity=0.250  Sum_probs=44.3

Q ss_pred             CceEEeeecC---CCCCcCcccCCCCcCCCCCeEEEccC-CceEEEeeCCCC----CCCCEEEEcCCCc-EEEEcccc-c
Q 026678          146 PEAAIVNYFG---LGDTLGGHLDDMEADWSKPIVSMSLG-CKAIFLLGGKSR----EDPPLAMFLRSGD-AVLMAGEA-R  215 (235)
Q Consensus       146 p~a~iVN~Y~---~Gd~lg~H~D~~E~~~~~PIvSiSLG-~~~iF~~~~~~~----~~~~~~l~L~sGD-vlvM~G~s-R  215 (235)
                      ++.+.+|+|.   .+.++++|.|.+     ..+++|-+- ...-+.|.....    ...+..+.+..|| +.+|++.. +
T Consensus         1 ~~~~~~~~Y~~~~~~~~~~~H~D~~-----~~~~Til~~~~~~gL~~~~~~~~~~v~~~~~~~~v~~G~~l~~~t~g~~~   75 (98)
T PF03171_consen    1 PSQLRLNRYPPPENGVGIGPHTDDE-----DGLLTILFQDEVGGLQVRDDGEWVDVPPPPGGFIVNFGDALEILTNGRYP   75 (98)
T ss_dssp             --EEEEEEE-SCCGCEEEEEEEES-------SSEEEEEETSTS-EEEEETTEEEE----TTCEEEEEBHHHHHHTTTSS-
T ss_pred             CCEEEEEECCCcccCCceeCCCcCC-----CCeEEEEecccchheeccccccccCccCccceeeeeceeeeecccCCccC
Confidence            4788999999   779999999974     235555443 444555544310    0112245555555 44455555 5


Q ss_pred             ceeeccCCC--CCcceeeeee
Q 026678          216 ECFHGECVL--PGNFIIMIWC  234 (235)
Q Consensus       216 ~~~H~VP~~--~~~~~~~~~~  234 (235)
                      .+.|+|...  ..-+.+++|+
T Consensus        76 ~~~HrV~~~~~~~R~s~~~f~   96 (98)
T PF03171_consen   76 ATLHRVVPPTEGERYSLTFFL   96 (98)
T ss_dssp             ---EEEE--STS-EEEEEEEE
T ss_pred             CceeeeEcCCCCCEEEEEEEE
Confidence            567999733  6777888875

The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....

>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]

Probab=96.51  E-value=0.0014  Score=58.66  Aligned_cols=118  Identities=22%  Similarity=0.367  Sum_probs=79.4

Q ss_pred             eeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCC-ceEEeeecCCC-CCcCcccCCCCcCCCCCeEEE
Q 026678          101 TLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQP-EAAIVNYFGLG-DTLGGHLDDMEADWSKPIVSM  178 (235)
Q Consensus       101 tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p-~a~iVN~Y~~G-d~lg~H~D~~E~~~~~PIvSi  178 (235)
                      .+|-.-||..+....+ .+..||+.-..+.+++...  |...+|+| ++|=+-|=+.. +.|-+|+||.=. ++.-+|++
T Consensus       109 dyGPKvNFkk~Klkt~-~F~G~P~~~~~v~rrm~~y--p~l~gfqp~EqCnLeYep~kgsaIdpH~DD~Wi-WGeRlv~~  184 (306)
T KOG3959|consen  109 DYGPKVNFKKKKLKTD-TFVGMPEYADMVLRRMSEY--PVLKGFQPFEQCNLEYEPVKGSAIDPHQDDMWI-WGERLVRS  184 (306)
T ss_pred             ccCCccchhhhhhccC-cccCCchHHHHHHHHhhcc--chhhccCcHHHcCcccccccCCccCccccchhh-hhhheeeh
Confidence            5788888877776543 4779999888888887642  23344543 78888777765 999999999633 34344433


Q ss_pred             c--------cC-----CceEEEeeCC-------------------CCCCCCEEEEcCCCcEEEEccccccee-eccC
Q 026678          179 S--------LG-----CKAIFLLGGK-------------------SREDPPLAMFLRSGDAVLMAGEARECF-HGEC  222 (235)
Q Consensus       179 S--------LG-----~~~iF~~~~~-------------------~~~~~~~~l~L~sGDvlvM~G~sR~~~-H~VP  222 (235)
                      -        |-     +++++.+...                   ........|.+.+.|+|||.|++|+-| |||-
T Consensus       185 n~l~d~vl~lc~~e~~~sg~~nL~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vl  261 (306)
T KOG3959|consen  185 NRLFDFVLKLCSKECLASGIINLNTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVL  261 (306)
T ss_pred             hhccHHHHHhhhhhhhccceeeeccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHHH
Confidence            2        11     2234433321                   112345689999999999999999977 9985

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A

Probab=96.29  E-value=0.004  Score=46.83  Aligned_cols=72  Identities=17%  Similarity=0.229  Sum_probs=44.7

Q ss_pred             EEeeecCCCCCcCcccCCCCcCCCCCeEEEc--cC-Cc-----eEEEeeCCC-CCCCCEEEE-----cCCCcEEEEcccc
Q 026678          149 AIVNYFGLGDTLGGHLDDMEADWSKPIVSMS--LG-CK-----AIFLLGGKS-REDPPLAMF-----LRSGDAVLMAGEA  214 (235)
Q Consensus       149 ~iVN~Y~~Gd~lg~H~D~~E~~~~~PIvSiS--LG-~~-----~iF~~~~~~-~~~~~~~l~-----L~sGDvlvM~G~s  214 (235)
                      |=+|.|.+|+.+++|.|....  ..-++++-  |. ..     ..+.|-... .+.....+.     .+.|+++++.+  
T Consensus         1 ~~~~~y~~G~~~~~H~D~~~~--~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~--   76 (100)
T PF13640_consen    1 MQLNRYPPGGFFGPHTDNSYD--PHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPS--   76 (100)
T ss_dssp             -EEEEEETTEEEEEEESSSCC--CSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEES--
T ss_pred             CEEEEECcCCEEeeeECCCCC--CcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeC--
Confidence            347999999999999998431  11233222  33 11     334443322 234445555     99999999999  


Q ss_pred             cceeeccCCC
Q 026678          215 RECFHGECVL  224 (235)
Q Consensus       215 R~~~H~VP~~  224 (235)
                      ...+|+|..+
T Consensus        77 ~~~~H~v~~v   86 (100)
T PF13640_consen   77 DNSLHGVTPV   86 (100)
T ss_dssp             CTCEEEEEEE
T ss_pred             CCCeecCccc
Confidence            8899999866

...

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues

Probab=93.24  E-value=1.1  Score=37.14  Aligned_cols=107  Identities=24%  Similarity=0.377  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhccCCC-CCCCCCceEEeeecCCCCCcCcccCCCCcCC-CCCeEEEcc-------CCceEEEeeCCCCCC
Q 026678          125 ALCQLAKRLAAPAMPI-GEEFQPEAAIVNYFGLGDTLGGHLDDMEADW-SKPIVSMSL-------GCKAIFLLGGKSRED  195 (235)
Q Consensus       125 ~L~~L~~~~~~~~~~~-~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~-~~PIvSiSL-------G~~~iF~~~~~~~~~  195 (235)
                      ....|.+++....... +.....+.+-|+.|..|+....|.|...... +.-++++-+       |..-.|.-.+   ..
T Consensus        60 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~---~~  136 (178)
T smart00702       60 VIERIRQRLADFLGLLRGLPLSAEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLG---LM  136 (178)
T ss_pred             HHHHHHHHHHHHHCCCchhhccCcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCC---Cc
Confidence            3445555555443200 0124567888899999999999999864321 122333222       1111221111   12


Q ss_pred             CCEEEEcCCCcEEEEcccccceeeccCCCC--Ccceeeeee
Q 026678          196 PPLAMFLRSGDAVLMAGEARECFHGECVLP--GNFIIMIWC  234 (235)
Q Consensus       196 ~~~~l~L~sGDvlvM~G~sR~~~H~VP~~~--~~~~~~~~~  234 (235)
                      ....+.-..|++|++...-...+|+|-.+.  ..+.+.+|+
T Consensus       137 ~~~~v~P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~~W~  177 (178)
T smart00702      137 VCATVKPKKGDLLFFPSGRGRSLHGVCPVTRGSRWAITGWI  177 (178)
T ss_pred             cceEEeCCCCcEEEEeCCCCCccccCCcceeCCEEEEEEEE
Confidence            345888899999999755446779996443  355666675

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional

Probab=84.40  E-value=5.3  Score=35.52  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=46.0

Q ss_pred             eEEeeecCCCCCcCcccCCCCcCC-C-----CCeEEEc--c-------CCceEEEeeCCCCCCCCEEEEcCCCcEEEEcc
Q 026678          148 AAIVNYFGLGDTLGGHLDDMEADW-S-----KPIVSMS--L-------GCKAIFLLGGKSREDPPLAMFLRSGDAVLMAG  212 (235)
Q Consensus       148 a~iVN~Y~~Gd~lg~H~D~~E~~~-~-----~PIvSiS--L-------G~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G  212 (235)
                      -..+|.|..|...++|+|..-... +     .-.+|+.  |       |..-+|.-     ......+.+..||+|++..
T Consensus        81 ~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~-----~~g~~~Vkp~aG~~vlfps  155 (226)
T PRK05467         81 PPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIED-----TYGEHRVKLPAGDLVLYPS  155 (226)
T ss_pred             cceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEec-----CCCcEEEecCCCeEEEECC
Confidence            467999999999999999864311 0     1123322  2       22222211     1124688899999999986


Q ss_pred             cccceeeccCCCCCcceee
Q 026678          213 EARECFHGECVLPGNFIIM  231 (235)
Q Consensus       213 ~sR~~~H~VP~~~~~~~~~  231 (235)
                      .   .+|.|-.+....+++
T Consensus       156 ~---~lH~v~pVt~G~R~~  171 (226)
T PRK05467        156 T---SLHRVTPVTRGVRVA  171 (226)
T ss_pred             C---CceeeeeccCccEEE
Confidence            4   669886433333443

>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function

Probab=82.99  E-value=6.8  Score=33.54  Aligned_cols=99  Identities=25%  Similarity=0.390  Sum_probs=58.1

Q ss_pred             CChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcCCCCCe-EEEccCCce------EEEeeCC-C
Q 026678          121 KIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPI-VSMSLGCKA------IFLLGGK-S  192 (235)
Q Consensus       121 ~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~~PI-vSiSLG~~~------iF~~~~~-~  192 (235)
                      .+|+.+.++.++..++.     ..+| ..|+..|..||....|.|---+ .-=|| +-|=|-.+.      .|.+.-. .
T Consensus        42 ~yP~~~~~fl~~ch~aG-----Q~rp-tplllrY~~gdyn~LHqdlyGe-~vFPlQvv~lLs~Pg~DftGGEFVltEQrP  114 (173)
T PF09859_consen   42 RYPATLAEFLARCHAAG-----QTRP-TPLLLRYGPGDYNCLHQDLYGE-HVFPLQVVILLSEPGEDFTGGEFVLTEQRP  114 (173)
T ss_pred             CCCccHHHHHHHHHhcc-----CCCC-chhhheeCCCCccccccCCCCC-cccCeEEEEEcCCCCCcccCceEEEEEecC
Confidence            55656666665554432     2344 4566789999999999997432 22354 333333332      3544321 1


Q ss_pred             C-CCCCEEEEcCCCcEEEEcccc----------ccee-eccCCCCC
Q 026678          193 R-EDPPLAMFLRSGDAVLMAGEA----------RECF-HGECVLPG  226 (235)
Q Consensus       193 ~-~~~~~~l~L~sGDvlvM~G~s----------R~~~-H~VP~~~~  226 (235)
                      | ...+..+.|+-||.+|+.-.-          |-.. |||-++-.
T Consensus       115 R~QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrs  160 (173)
T PF09859_consen  115 RMQSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRS  160 (173)
T ss_pred             CccCccccCCcCCCCEEEEecCCCCcCCCccceecccccccccccc
Confidence            2 235788999999999997432          3333 88874433

>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []

Probab=80.21  E-value=22  Score=30.00  Aligned_cols=75  Identities=16%  Similarity=0.202  Sum_probs=45.5

Q ss_pred             CCCceEEeeecCCCCCcCcccCCCCcCCC-CCeEEEccC--CceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeec
Q 026678          144 FQPEAAIVNYFGLGDTLGGHLDDMEADWS-KPIVSMSLG--CKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG  220 (235)
Q Consensus       144 ~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~-~PIvSiSLG--~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~  220 (235)
                      |.-=.++.|+     ....|.|......+ ..++.+-.|  ....|.+-....+---+++.+.+||||++-|  +...||
T Consensus        76 Fs~~sv~~nr-----~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~--~~~~Hg  148 (171)
T PF12851_consen   76 FSGVSVISNR-----CTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCA--KRELHG  148 (171)
T ss_pred             eeceEEEeec-----CccceecCCCCCCCeEEEEecCCccccCceEeccccccccCCEEEecCCCcEEEEcc--cceeee
Confidence            4333455555     67789998543222 223344444  3456666442222346799999999999875  566799


Q ss_pred             cCCCC
Q 026678          221 ECVLP  225 (235)
Q Consensus       221 VP~~~  225 (235)
                      |..+.
T Consensus       149 vtpv~  153 (171)
T PF12851_consen  149 VTPVE  153 (171)
T ss_pred             cCccc
Confidence            98544

Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	235
3khc_A	219	Crystal Structure Of Escherichia Coli Alkb In Compl		5e-12
3bkz_A	201	X-Ray Structure Of E Coli Alkb Crosslinked To Dsdna		7e-12
2fd8_A	211	Crystal Structure Of Alkb In Complex With Fe(Ii), 2		8e-12
3t3y_A	206	Crystal Structure Of Alkb In Complex With Fe(Iii) A		8e-12
3khb_A	219	Crystal Structure Of Escherichia Coli Alkb With Co(		9e-12
3bi3_A	201	X-Ray Structure Of Alkb Protein Bound To Dsdna Cont		2e-11
3bie_A	202	X-Ray Structure Of E Coli Alkb Bound To Dsdna Conta		2e-11
3o1m_A	206	Iron-Catalyzed Oxidation Intermediates Captured In		2e-11

>pdb|3KHC|A Chain A, Crystal Structure Of Escherichia Coli Alkb In Complex With Ssdna Containing A 1-Methylguanine Lesion Length = 219

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 97  LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFXX 156
           L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A ++N +  
Sbjct: 70  LGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINRYAP 127
Query: 157 XXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
                      E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+  GE+R 
Sbjct: 128 GAKLSLHQDKAEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRL 187
Query: 217 CFHGECVLPGNF 228
            +HG   L   F
Sbjct: 188 FYHGIQPLKAGF 199

>pdb|3BKZ|A Chain A, X-Ray Structure Of E Coli Alkb Crosslinked To Dsdna In The Active Site Length = 201

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 97  LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFXX 156
           L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A ++N +  
Sbjct: 54  LGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINRYAP 111
Query: 157 XXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
                      E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+  GE+R 
Sbjct: 112 GAKLSLHQDKCEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRL 171
Query: 217 CFHGECVLPGNF 228
            +HG   L   F
Sbjct: 172 FYHGIQPLKAGF 183

>pdb|2FD8|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii), 2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T Length = 211

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 97  LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFXX 156
           L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A ++N +  
Sbjct: 57  LGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINRYAP 114
Query: 157 XXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
                      E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+  GE+R 
Sbjct: 115 GAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRL 174
Query: 217 CFHGECVLPGNF 228
            +HG   L   F
Sbjct: 175 FYHGIQPLKAGF 186

>pdb|3T3Y|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Iii) And 2-(3- Hydroxypicolinomido)acetic Acid Length = 206

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 97  LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFXX 156
           L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A ++N +  
Sbjct: 57  LGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINRYAP 114
Query: 157 XXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
                      E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+  GE+R 
Sbjct: 115 GAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRL 174
Query: 217 CFHGECVLPGNF 228
            +HG   L   F
Sbjct: 175 FYHGIQPLKAGF 186

>pdb|3KHB|A Chain A, Crystal Structure Of Escherichia Coli Alkb With Co(Ii) And 2-Og Length = 219

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 97  LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFXX 156
           L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A ++N +  
Sbjct: 70  LGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINRYAP 127
Query: 157 XXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
                      E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+  GE+R 
Sbjct: 128 GAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRL 187
Query: 217 CFHGECVLPGNF 228
            +HG   L   F
Sbjct: 188 FYHGIQPLKAGF 199

>pdb|3BI3|A Chain A, X-Ray Structure Of Alkb Protein Bound To Dsdna Containing 1meaA WITH Cofactors Length = 201

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 97  LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFXX 156
           L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A ++N +  
Sbjct: 55  LGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINRYAP 112
Query: 157 XXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
                      E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+  GE+R 
Sbjct: 113 GAKLCLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRL 172
Query: 217 CFHGECVLPGNF 228
            +HG   L   F
Sbjct: 173 FYHGIQPLKAGF 184

>pdb|3BIE|A Chain A, X-Ray Structure Of E Coli Alkb Bound To Dsdna Containing 1meaT WITH Mn And 2kg Length = 202

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 97  LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFXX 156
           L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A ++N +  
Sbjct: 55  LGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINRYAP 112
Query: 157 XXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
                      E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+  GE+R 
Sbjct: 113 GAKLCLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRL 172
Query: 217 CFHGECVLPGNF 228
            +HG   L   F
Sbjct: 173 FYHGIQPLKAGF 184

>pdb|3O1M|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna Repair Dioxygenase Length = 206

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 97  LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFXX 156
           L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A ++N +  
Sbjct: 57  LGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINRYAP 114
Query: 157 XXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
                      E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+  GE+R 
Sbjct: 115 GAKLCLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRL 174
Query: 217 CFHGECVLPGNF 228
            +HG   L   F
Sbjct: 175 FYHGIQPLKAGF 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
3i3q_A	211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	2e-40
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	2e-16
3s57_A	204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	2e-06
2iuw_A	238	Alkylated repair protein ALKB homolog 3; oxidoredu	9e-05

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211

 Score =  137 bits (345), Expect = 2e-40
 Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 2/128 (1%)

Query: 93  LLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVN 152
               L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A ++N
Sbjct: 53  NCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLIN 110

Query: 153 YFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAG 212
            +  G  L  H D  E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+  G
Sbjct: 111 RYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGG 170

Query: 213 EARECFHG 220
           E+R  +HG
Sbjct: 171 ESRLFYHG 178

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345

 Score = 76.4 bits (187), Expect = 2e-16
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 94  LRKLRWCTLGLQFDWSKRNYNVSLP-HKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVN 152
           L+  R    G +F +   N +   P    +PD      ++          + +P+   +N
Sbjct: 147 LKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESFLEKWLRKGYI---KHKPDQMTIN 203

Query: 153 YFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAG 212
            +  G  +  H+D   A +   IVS+SLG + +     K  +   + + L     ++M G
Sbjct: 204 QYEPGQGIPAHIDTHSA-FEDEIVSLSLGSEIVMDF--KHPDGIAVPVMLPRRSLLVMTG 260

Query: 213 EAR-ECFHG 220
           E+R    HG
Sbjct: 261 ESRYLWTHG 269

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Length = 204

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 14/122 (11%)

Query: 107 DWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDD 166
             +     ++L  K     L ++   ++               ++N +  G        D
Sbjct: 65  GLTYTFSGLTLSPKPWIPVLERIRDHVSGVT-----GQTFNFVLINRYKDGSDHICEHRD 119

Query: 167 MEADWSK--PIVSMSLGCKAIFLLGGK-------SREDPPLAMFLRSGDAVLMAGEAREC 217
            E + +   PI S+S G    F+   K       SR    + + L  G  ++M       
Sbjct: 120 DERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTH 179

Query: 218 FH 219
           ++
Sbjct: 180 WY 181

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238

 Score = 41.4 bits (96), Expect = 9e-05
 Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 14/113 (12%)

Query: 118 PHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEA-DWSKPIV 176
           P+      L  L  R+                   Y    D++  H DD  +      I 
Sbjct: 102 PNPHWHPVLRTLKNRI----EENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIA 157

Query: 177 SMSLGCKAIFLL--------GGKSREDPPLAMFLRSGDAVLMAGEARECF-HG 220
           S+S G    F +         G       + + L  G  ++M G  +  + H 
Sbjct: 158 SLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHR 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
3i3q_A	211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	100.0
3s57_A	204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	99.94
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.94
2iuw_A	238	Alkylated repair protein ALKB homolog 3; oxidoredu	99.93
3lfm_A	495	Protein FTO; FAT MASS and obesity associated (FTO)	96.11

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...

Probab=100.00  E-value=2.1e-32  Score=236.93  Aligned_cols=139  Identities=33%  Similarity=0.518  Sum_probs=120.3

Q ss_pred             cccchh-hccceeeEeeeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCccc
Q 026678           86 KSVKAG-VLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHL  164 (235)
Q Consensus        86 ~~~~~~-~ll~klRW~tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~  164 (235)
                      +.++.+ ....+|.|++-+..|.|++..+....++++||++|.+|+++++..+  ++..|.||+||||+|++|++|+||+
T Consensus        45 ~~~s~~~~~~g~~~W~~d~~~Y~Ys~~~~~~~~pw~~~P~~L~~l~~~~~~~~--g~~~~~pn~~LvN~Y~~G~~i~~H~  122 (211)
T 3i3q_A           45 YTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAA--GYPDFQPDACLINRYAPGAKLSLHQ  122 (211)
T ss_dssp             CBCSSEEEEESSBEEEEETTEEEEESBCTTTSSBCCCCCHHHHHHHHHHHHHT--TCTTCCCCEEEEEEECTTCCEEEEC
T ss_pred             CcCchhhcccccceeecCCCCcCcCCCccCCCCCCCchHHHHHHHHHHHHHhc--CCCCcCCCEEEEEEEcCCCCccccc
Confidence            345554 4567899999888899998875555689999999999999998765  4457899999999999999999999


Q ss_pred             CCCCcCCCCCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeeccCCCCC
Q 026678          165 DDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPG  226 (235)
Q Consensus       165 D~~E~~~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~VP~~~~  226 (235)
                      |+.|.+++.||+|||||++|+|.|+++++++....+.|++||+|||+|++|+|+||||+.+.
T Consensus       123 D~~e~~~~~pI~svSLG~~~~f~f~~~~~~~~~~~i~L~~GsllvM~G~~r~~~H~I~~~~~  184 (211)
T 3i3q_A          123 DKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKA  184 (211)
T ss_dssp             CCCCSCTTSCEEEEEEESCEEEEECCSSTTSCCEEEEECTTCEEEECGGGTTCCEEECCCCC
T ss_pred             CCCccccCCCEEEEECCCCeEEEEecccCCCceEEEECCCCCEEEECchHHceEeccCcccC
Confidence            96565577899999999999999999877778899999999999999999998899997664

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*

Probab=99.94  E-value=2.4e-27  Score=203.70  Aligned_cols=124  Identities=21%  Similarity=0.259  Sum_probs=103.9

Q ss_pred             ccceeeEee-eCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCC-CCcCcccCCCC-c
Q 026678           93 LLRKLRWCT-LGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLG-DTLGGHLDDME-A  169 (235)
Q Consensus        93 ll~klRW~t-lG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~G-d~lg~H~D~~E-~  169 (235)
                      ..|+..|.+ -|..|+|+.+.+..    .+||++|..|++++++.+     ++.||+||||+|++| |+||||+|+++ .
T Consensus        54 ~pR~~~wyg~~~~~Y~Ysg~~~~~----~pwp~~L~~l~~~~~~~~-----g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~  124 (204)
T 3s57_A           54 VPRKQATYGDAGLTYTFSGLTLSP----KPWIPVLERIRDHVSGVT-----GQTFNFVLINRYKDGSDHICEHRDDEREL  124 (204)
T ss_dssp             CSSEEEEEECTTCCEEETTEEECC----EECCHHHHHHHHHHHHHH-----CCCCSEEEEEEESSTTCCEEEECCCCTTB
T ss_pred             cCcEEEEECCCCCCcccCCCcccC----CCCCHHHHHHHHHHHHHh-----CCCCceeEEEEECCCCCcccceecChhhc
Confidence            346778887 45789999988742    488999999999997765     578999999999999 59999999954 3


Q ss_pred             CCCCCeEEEccCCceEEEeeCCC-------CCCCCEEEEcCCCcEEEEcccccc-eeeccCCCC
Q 026678          170 DWSKPIVSMSLGCKAIFLLGGKS-------REDPPLAMFLRSGDAVLMAGEARE-CFHGECVLP  225 (235)
Q Consensus       170 ~~~~PIvSiSLG~~~iF~~~~~~-------~~~~~~~l~L~sGDvlvM~G~sR~-~~H~VP~~~  225 (235)
                      +.+.+|+|||||++|+|.|+++.       +......+.|++||+|||+|++|. |+||||+.+
T Consensus       125 ~~~~~IasvSLG~~~~f~~~~~~~~~~~~~~~~~~~~~~L~~GsllvM~g~~q~~w~H~Ip~~~  188 (204)
T 3s57_A          125 APGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRK  188 (204)
T ss_dssp             CTTCCEEEEEEESCEEEEEEEGGGCSSSCSCCCCCEEEEECTTEEEEEETTHHHHEEEEECCCT
T ss_pred             cCCCcEEEEECCCceEEEEEEcCCCccccccCCceEEEECCCCCEEEECchhhheeEeeccccC
Confidence            46789999999999999999753       223578999999999999999988 559999766

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.94  E-value=8.7e-27  Score=214.72  Aligned_cols=131  Identities=21%  Similarity=0.351  Sum_probs=94.4

Q ss_pred             hccceeeEeeeCceeeeCCCcccCCCCC-CCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcC
Q 026678           92 VLLRKLRWCTLGLQFDWSKRNYNVSLPH-KKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEAD  170 (235)
Q Consensus        92 ~ll~klRW~tlG~~Ydw~~~~Y~~~~~~-~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~  170 (235)
                      ..+.++|++.+|+.|+|+++.+....++ .+||++|..|++++++..   ..++.||+||||+|++|++|+||+|+++. 
T Consensus       145 ~~l~~Rr~~~yG~~Y~Ys~~~~~~~~p~p~~~P~~L~~l~~r~~~~~---~~~~~~n~~lvN~Y~~G~~I~~H~D~~~~-  220 (345)
T 3tht_A          145 KSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESFLEKWLRKG---YIKHKPDQMTINQYEPGQGIPAHIDTHSA-  220 (345)
T ss_dssp             -----CEEECCC------------------CCCHHHHHHHHHHHHHT---SCSSCCSEEEEEEECTTCCEEEECCCTTT-
T ss_pred             ccccCceEEEECCcccccccccccCCCCCcCcCHHHHHHHHHHHhcc---cCCCCCCEEEEEEecCCCCEeeccCCchh-
Confidence            4455677788999999999988755554 479999999999987532   23689999999999999999999999765 


Q ss_pred             CCCCeEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEccccccee-eccCCC-CCcc
Q 026678          171 WSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECF-HGECVL-PGNF  228 (235)
Q Consensus       171 ~~~PIvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~-H~VP~~-~~~~  228 (235)
                      ++.||+|||||++|+|.|+++.  ....++.|++||+|||+|++|+.| ||||++ ++++
T Consensus       221 ~~~~I~slSLG~~~~f~f~~~~--~~~~~l~L~~gsLlvM~G~~r~~w~H~I~~~~~d~~  278 (345)
T 3tht_A          221 FEDEIVSLSLGSEIVMDFKHPD--GIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTV  278 (345)
T ss_dssp             BCSCEEEEEESSCEEEEEECTT--SCEEEEEECTTEEEEECTHHHHTSEEEECCCSEEEE
T ss_pred             cCCeEEEEECCCceeEEEccCC--CceEEEEcCCCcEEEEChHHhhceEccCCcccCCcc
Confidence            6789999999999999999863  457899999999999999999877 999954 4444

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10

Probab=99.93  E-value=1.5e-26  Score=202.87  Aligned_cols=121  Identities=20%  Similarity=0.293  Sum_probs=98.5

Q ss_pred             cceeeEeeeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCC-CCcCcccCCCCcCCC
Q 026678           94 LRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLG-DTLGGHLDDMEADWS  172 (235)
Q Consensus        94 l~klRW~tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~G-d~lg~H~D~~E~~~~  172 (235)
                      .|...|.+ ++.|+|+...+.   +.++||++|..|++++++.+     +..||+||||+|++| |+|+||+|+++. ++
T Consensus        82 ~R~~~~~g-~~~Y~Ys~~~~~---~~p~wp~~l~~l~~~~~~~~-----g~~~n~~LvN~Y~~G~d~i~~H~D~~~~-~~  151 (238)
T 2iuw_A           82 PRLTAWYG-ELPYTYSRITME---PNPHWHPVLRTLKNRIEENT-----GHTFNSLLCNLYRNEKDSVDWHSDDEPS-LG  151 (238)
T ss_dssp             SSEEEEEE-CCCTTSCHHHHC---CBSSCCHHHHHHHHHHHHHH-----SCCCCEEEEEEECSTTCCEEEECCCCGG-GC
T ss_pred             CCeeEEcC-CCccccCCcccC---CCCCCCHHHHHHHHHHHHHh-----CCCCCEEEEEEECCCCCceeCCcCChhh-cC
Confidence            34556765 366777766553   23589999999999987765     468999999999999 699999999643 44


Q ss_pred             --CCeEEEccCCceEEEeeCCCCC--------CCCEEEEcCCCcEEEEccccccee-eccCCC
Q 026678          173 --KPIVSMSLGCKAIFLLGGKSRE--------DPPLAMFLRSGDAVLMAGEARECF-HGECVL  224 (235)
Q Consensus       173 --~PIvSiSLG~~~iF~~~~~~~~--------~~~~~l~L~sGDvlvM~G~sR~~~-H~VP~~  224 (235)
                        .+|+|||||++|+|.|+++.+.        ...+.|.|++||+|||+|++|..| ||||+.
T Consensus       152 ~~~~IaslSLG~~~~f~f~~~~~~~~~~~~~~~~~~~i~L~~gsllvM~G~~r~~w~H~I~~~  214 (238)
T 2iuw_A          152 RCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKE  214 (238)
T ss_dssp             SSCCEEEEEEESCEEEEEEECCC--------CCCEEEEEECTTCEEEEEETHHHHEEEEECCC
T ss_pred             CCCcEEEEECCCCEEEEEeccCCccccCcccCCceEEEEcCCCCEEEEChhhhCccEecCCCc
Confidence              7899999999999999986542        357899999999999999998765 999975

>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens}

Probab=96.11  E-value=0.0059  Score=57.87  Aligned_cols=76  Identities=24%  Similarity=0.330  Sum_probs=48.6

Q ss_pred             CCceEEeeecCC--------------C-CCcCcccCCCCcCCCCCeEEEccCC-----------------ceEEEeeCC-
Q 026678          145 QPEAAIVNYFGL--------------G-DTLGGHLDDMEADWSKPIVSMSLGC-----------------KAIFLLGGK-  191 (235)
Q Consensus       145 ~p~a~iVN~Y~~--------------G-d~lg~H~D~~E~~~~~PIvSiSLG~-----------------~~iF~~~~~-  191 (235)
                      .+|..||||+.+              | -.+|||.|..=. -..+|+-.|.-|                 +++..+|=+ 
T Consensus       188 ~fNvTLlN~Mdp~~m~~LKeEpyfgMGKmaVsWHhDenL~-~~StVAVY~~sc~~~~~~~~~~~~~~~~d~~~W~Vglki  266 (495)
T 3lfm_A          188 AYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLV-DRSAVAVYSYSCEGPEEESEDDSHLEGRDPDIWHVGFKI  266 (495)
T ss_dssp             CCCEEEEEEECSSCSSSCCBCSSSCCCBEEEEEECCCSBC-TTCCEEEEEEECCC-------------CCTTSEEEEEEE
T ss_pred             eeehhhhhccCcccccccccccccCCcceeeeeccccccc-cCcceEEEEeecCCccccccccccCCCCCccceeEeeee
Confidence            789999999876              3 458999996432 235665444322                 233444322 


Q ss_pred             --CCCCCCEEEEcCCCcEEEEcccc-cceeecc
Q 026678          192 --SREDPPLAMFLRSGDAVLMAGEA-RECFHGE  221 (235)
Q Consensus       192 --~~~~~~~~l~L~sGDvlvM~G~s-R~~~H~V  221 (235)
                        .-..+.+.|.|++||...|-+.- ..+.|+|
T Consensus       267 awDi~tP~L~vpL~sgd~Y~Mldd~N~~HqH~V  299 (495)
T 3lfm_A          267 SWDIETPGLAIPLHQGDCYFMLDDLNATHQHCV  299 (495)
T ss_dssp             TTCCSSCEEEEEECTTCEEEECTTHHHHEEEEE
T ss_pred             cccCCCCceeeecCCCCeeeecchhhhhhhhhh
Confidence              22346889999999999986554 4444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d2fdia1	200	b.82.2.10 (A:15-214) Alkylated DNA repair protein	1e-25
d2iuwa1	210	b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s	3e-07

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score = 97.1 bits (241), Expect = 1e-25
 Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 2/127 (1%)

Query: 94  LRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNY 153
              L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A ++N 
Sbjct: 50  CGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINR 107

Query: 154 FGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGE 213
           +  G  L  H D  E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+  GE
Sbjct: 108 YAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGE 167

Query: 214 ARECFHG 220
           +R  +HG
Sbjct: 168 SRLFYHG 174

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 3e-07
 Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 10/130 (7%)

Query: 101 TLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTL 160
              L   + +  Y  S    +       + + L                   Y    D++
Sbjct: 60  QPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSV 119

Query: 161 GGHLDDMEA-DWSKPIVSMSLGCKAIFLL--------GGKSREDPPLAMFLRSGDAVLMA 211
             H DD  +      I S+S G    F +         G       + + L  G  ++M 
Sbjct: 120 DWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIME 179

Query: 212 GEARECF-HG 220
           G  +  + H 
Sbjct: 180 GATQADWQHR 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d2fdia1	200	Alkylated DNA repair protein AlkB {Escherichia col	99.98
d2iuwa1	210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	99.88
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	90.65

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=9.8e-33  Score=234.85  Aligned_cols=130  Identities=35%  Similarity=0.561  Sum_probs=116.5

Q ss_pred             ceeeEeeeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCCCCcCcccCCCCcCCCCC
Q 026678           95 RKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKP  174 (235)
Q Consensus        95 ~klRW~tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~Gd~lg~H~D~~E~~~~~P  174 (235)
                      .++.|.+-.+.|.|++..+....+++++|++|.+|+++++..+  ++..+.||+||||||++|+.|++|.|++|.+++.|
T Consensus        51 g~~gW~~d~~~Yry~~~~~~~~~~wp~iP~~l~~L~~~~~~~~--~~~~~~pn~~LvN~Y~~G~~~~~h~dddE~~~~~p  128 (200)
T d2fdia1          51 GHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAA--GYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAP  128 (200)
T ss_dssp             SSBEEEEETTEEEEESBCTTTSSBCCCCCHHHHHHHHHHHHHH--TCTTCCCSEEEEEEECTTCCEEEECCCCSSCTTSC
T ss_pred             cccccccCCcCcccccccCCCCCCCCCccHHHHHHHHHHHHHc--CCCccCCCeeEEEEecCCCCccccccCCccccCCC
Confidence            4678998777888888776666689999999999999998876  56688999999999999999999999888788999


Q ss_pred             eEEEccCCceEEEeeCCCCCCCCEEEEcCCCcEEEEcccccceeeccCCCCC
Q 026678          175 IVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGECVLPG  226 (235)
Q Consensus       175 IvSiSLG~~~iF~~~~~~~~~~~~~l~L~sGDvlvM~G~sR~~~H~VP~~~~  226 (235)
                      |+|||||++|+|.|+++++.+++..+.|++||||||+|++|+||||||+++.
T Consensus       129 IvslSLG~~~~f~f~~~~~~~~~~~~~L~~Gdllvm~G~~r~~~H~V~~~~~  180 (200)
T d2fdia1         129 IVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKA  180 (200)
T ss_dssp             EEEEEEESCEEEEECCSSTTSCCEEEEECTTCEEEECGGGGGCCEEECCCCC
T ss_pred             ceEEEEeCCeeEEecccccCCceEEEEcCCCCEEEeCcchhheEecCCcccC
Confidence            9999999999999999888888999999999999999999999999996543

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.9e-23  Score=175.48  Aligned_cols=123  Identities=20%  Similarity=0.264  Sum_probs=93.9

Q ss_pred             ceeeEeeeCceeeeCCCcccCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCceEEeeecCCC-CCcCcccCCCCcC-CC
Q 026678           95 RKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLG-DTLGGHLDDMEAD-WS  172 (235)
Q Consensus        95 ~klRW~tlG~~Ydw~~~~Y~~~~~~~~~P~~L~~L~~~~~~~~~~~~~~~~p~a~iVN~Y~~G-d~lg~H~D~~E~~-~~  172 (235)
                      |+..|.. +..|.|+.....   +..+||+.|..|.+++.+..     +..+++|++|+|.+| ++||+|+|+++.. .+
T Consensus        62 R~~~~~~-d~~y~y~~~~~~---~~~~~~~~l~~l~~~~~~~~-----~~~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~  132 (210)
T d2iuwa1          62 RLTAWYG-ELPYTYSRITME---PNPHWHPVLRTLKNRIEENT-----GHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRC  132 (210)
T ss_dssp             SEEEEEE-CCCTTSCHHHHC---CBSSCCHHHHHHHHHHHHHH-----SCCCCEEEEEEECSTTCCEEEECCCCGGGCSS
T ss_pred             eeeEEec-CcCccccccccc---cCCCCcHHHHHHHHhhhhhc-----CccchhhhhhccccCCCccccCcCCchhcccC
Confidence            3444442 334444444332   34679999999999998765     457899999999887 9999999987642 24


Q ss_pred             CCeEEEccCCceEEEeeCCC--------CCCCCEEEEcCCCcEEEEccccccee-eccCCCCC
Q 026678          173 KPIVSMSLGCKAIFLLGGKS--------REDPPLAMFLRSGDAVLMAGEARECF-HGECVLPG  226 (235)
Q Consensus       173 ~PIvSiSLG~~~iF~~~~~~--------~~~~~~~l~L~sGDvlvM~G~sR~~~-H~VP~~~~  226 (235)
                      .+|+|||||++|+|.|+.+.        +...+++|.|.+|||+||+|++|..| ||||+.++
T Consensus       133 ~~I~slSlG~~~~~~~r~~~~~~~~~~~~~~~~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~~  195 (210)
T d2iuwa1         133 PIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYH  195 (210)
T ss_dssp             CCEEEEEEESCEEEEEEECCC--------CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSS
T ss_pred             CceeEEeeCCceEEEEccccccccCCccCCCceEEEEcCCCCEEEeCchhhCceEccCCccCC
Confidence            56999999999999997532        23457899999999999999998877 99997654

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=90.65  E-value=1.2  Score=36.06  Aligned_cols=70  Identities=16%  Similarity=0.172  Sum_probs=46.2

Q ss_pred             CCCcCcccCCCCcCCCCCeEEEccCCceEEEeeCCC-------------------------------CCCCCEEEEcCCC
Q 026678          157 GDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKS-------------------------------REDPPLAMFLRSG  205 (235)
Q Consensus       157 Gd~lg~H~D~~E~~~~~PIvSiSLG~~~iF~~~~~~-------------------------------~~~~~~~l~L~sG  205 (235)
                      |.+.+.|.|..+.     ++..=.|..+..++.+..                               .......+.|++|
T Consensus       132 g~~~~~H~D~~d~-----f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pG  206 (319)
T d1vrba1         132 GGGFKAHFDAYTN-----LIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPG  206 (319)
T ss_dssp             SCCCCSEECSSEE-----EEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTT
T ss_pred             CCCCccccCCCce-----eEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCC
Confidence            4889999997532     333335777766664321                               1123567899999


Q ss_pred             cEEEEcccccceeeccCCCCCcceeeeee
Q 026678          206 DAVLMAGEARECFHGECVLPGNFIIMIWC  234 (235)
Q Consensus       206 DvlvM~G~sR~~~H~VP~~~~~~~~~~~~  234 (235)
                      |+|.|  + +.|||.|--.-.+..+-+|.
T Consensus       207 DvLYi--P-~gw~H~v~s~~~sis~sv~f  232 (319)
T d1vrba1         207 TMLYL--P-RGLWHSTKSDQATLALNITF  232 (319)
T ss_dssp             CEEEE--C-TTCEEEEECSSCEEEEEEEE
T ss_pred             CEEEe--C-CCceEEeEecCCeEEEEEEe
Confidence            99999  3 56777776666677776664