Citrus Sinensis ID: 026679

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDESTDPQATVKSDQV
Secondary Structure (PSIPRED)
ccccEEEEEEccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccEEEEEccccccccccEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccEEEEEEccccccccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEccccEEEEEEcccccccHEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccEEEEEcccccccEEEEcccccEEccccc
Coil and Loop (DISEMBL)
MYDNRILRYFKGHKERVISLcmspvndsfmsgsldhsVRIWDLRVNACQGIlrlrgrptvafdqQGLVFAVAMEAGAIklfdsrsydkgpfdtflvggdtaevcdikfsndgksmlltttnnNIYVLDayggekrcgfslepspntnteatftpdgqyvvsgsgdgtlhawNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLsfwipnpssnstdestdpqatvksdqv
Flexible Loop (DISEMBL)
MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWipnpssnstdestdpqatvksdqv
Low Complexity Region (SEG)
MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDESTDPQATVKSDQV
Disordered region (IsUnstruct)
****RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL***********FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI***********************
Disordered Region (DISOPRED)
MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSN*****************
Disordered Region (DISEMBL)
MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNP********************
Disordered Region (DISPRO)
**DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDESTDPQA*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDESTDPQATVKSDQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q58E77	313	WD repeat-containing prot	N/A	no	0.906	0.680	0.444	1e-51
Q6GL39	313	WD repeat-containing prot	yes	no	0.906	0.680	0.439	2e-51
Q6NV31	313	WD repeat-containing prot	yes	no	0.906	0.680	0.444	2e-51
Q8BFQ4	313	WD repeat-containing prot	yes	no	0.906	0.680	0.439	6e-51
Q6UXN9	313	WD repeat-containing prot	yes	no	0.906	0.680	0.439	6e-51
Q5ZMV7	313	WD repeat-containing prot	yes	no	0.906	0.680	0.439	6e-51
Q640J6	313	WD repeat-containing prot	N/A	no	0.906	0.680	0.425	5e-50
O60137	357	Set1 complex component sw	yes	no	0.714	0.470	0.362	5e-26
Q9UT39	341	Uncharacterized WD repeat	no	no	0.906	0.624	0.329	1e-25
P36104	329	COMPASS component SWD2 OS	yes	no	0.885	0.632	0.32	9e-24

>sp|Q58E77|WD82B_XENLA WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2 SV=1

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 145/216 (67%), Gaps = 3/216 (1%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           ++DN+ +RYF GH +RV+SL MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  
Sbjct: 94  LHDNKYIRYFPGHSKRVVSLSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVC 153

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 119
           +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +LL+T
Sbjct: 154 SFDPEGLIFAAGINSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTALKFSNDGKLILLST 213

Query: 120 TNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
               + ++DA+ G     F     S     EA+FTPD Q+++ GS DG +H WN  +  +
Sbjct: 214 NGGFLRLVDAFKGAVMHTFGGYNNSKAVTLEASFTPDSQFIMIGSEDGKIHVWNCESGMK 273

Query: 179 VACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 213
           VA  +G + G + CL++ P+   F +A S ++FW+P
Sbjct: 274 VAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.
Xenopus laevis (taxid: 8355)

>sp|Q6GL39|WDR82_XENTR WD repeat-containing protein 82 OS=Xenopus tropicalis GN=wdr82 PE=2 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 145/216 (67%), Gaps = 3/216 (1%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           ++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  
Sbjct: 94  LHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVC 153

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 119
           +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +L++T
Sbjct: 154 SFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTALKFSNDGKLILMST 213

Query: 120 TNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
               + ++DA+ G     F     S     EATFTPD Q+++ GS DG +H WN  +  +
Sbjct: 214 NGGFLRLVDAFKGAVMHTFGGYNNSKAVTLEATFTPDSQFIMIGSEDGKIHVWNCESGMK 273

Query: 179 VACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 213
           VA  +G + G + CL++ P+   F +A S ++FW+P
Sbjct: 274 VAVLDGKHTGPITCLQFNPKFMTFTSACSNMAFWLP 309

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Xenopus tropicalis (taxid: 8364)

>sp|Q6NV31|WDR82_DANRE WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 145/216 (67%), Gaps = 3/216 (1%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           ++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  
Sbjct: 94  LHDNKYIRYFPGHNKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVC 153

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 119
           +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  + T E   +KFSNDGK +L++T
Sbjct: 154 SFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKLQYERTCEWTGLKFSNDGKLILVST 213

Query: 120 TNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
               + VLDA+ G     F     S     EA+FTPD Q+++ GS DG +H WN  +  +
Sbjct: 214 NGGTLRVLDAFKGAVLHSFGGYNNSKGVILEASFTPDSQFIMIGSEDGKIHVWNAESGMK 273

Query: 179 VACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 213
           VA  +G + G V CL++ P+   F +A S ++FW+P
Sbjct: 274 VALLDGKHTGPVTCLQFNPKFMTFASACSNMAFWLP 309

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Danio rerio (taxid: 7955)

>sp|Q8BFQ4|WDR82_MOUSE WD repeat-containing protein 82 OS=Mus musculus GN=Wdr82 PE=1 SV=1

 Score =  200 bits (509), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 146/216 (67%), Gaps = 3/216 (1%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           ++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  
Sbjct: 94  LHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVC 153

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 119
           +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +L++T
Sbjct: 154 SFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILIST 213

Query: 120 TNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
             + I ++DA+ G     F     S     EA+FTPD Q+++ GS DG +H WN  +  +
Sbjct: 214 NGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIK 273

Query: 179 VACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 213
           VA  +G + G + CL++ P+   F +A S ++FW+P
Sbjct: 274 VAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309

Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase. Possible role in telomere length maintenance and in mRNA processing.

Mus musculus (taxid: 10090)

>sp|Q6UXN9|WDR82_HUMAN WD repeat-containing protein 82 OS=Homo sapiens GN=WDR82 PE=1 SV=1

 Score =  200 bits (509), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 146/216 (67%), Gaps = 3/216 (1%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           ++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  
Sbjct: 94  LHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVC 153

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 119
           +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +L++T
Sbjct: 154 SFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILIST 213

Query: 120 TNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
             + I ++DA+ G     F     S     EA+FTPD Q+++ GS DG +H WN  +  +
Sbjct: 214 NGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIK 273

Query: 179 VACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 213
           VA  +G + G + CL++ P+   F +A S ++FW+P
Sbjct: 274 VAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309

Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase.

Homo sapiens (taxid: 9606)

>sp|Q5ZMV7|WDR82_CHICK WD repeat-containing protein 82 OS=Gallus gallus GN=WDR82 PE=2 SV=1

 Score =  200 bits (509), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 145/216 (67%), Gaps = 3/216 (1%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           ++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  
Sbjct: 94  LHDNKYIRYFPGHTKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVC 153

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 119
           +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +L++T
Sbjct: 154 SFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILIST 213

Query: 120 TNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
               I ++DA+ G     F     S     EA+FTPD Q+++ GS DG +H WN  +  +
Sbjct: 214 NGGFIRLIDAFKGAVLHTFGGYNNSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGMK 273

Query: 179 VACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 213
           VA  +G + G + CL++ P+   F +A S ++FW+P
Sbjct: 274 VAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Gallus gallus (taxid: 9031)

>sp|Q640J6|WD82A_XENLA WD repeat-containing protein 82-A OS=Xenopus laevis GN=wdr82-a PE=2 SV=1

 Score =  197 bits (501), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 92/216 (42%), Positives = 143/216 (66%), Gaps = 3/216 (1%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           ++DN+ +RYF GH +RV++L MSPV+D+F+S SLD ++R+WDLR   CQG++ L+G+P  
Sbjct: 94  LHDNKYIRYFPGHSKRVVALSMSPVDDTFISASLDKTIRLWDLRSPNCQGLMHLQGKPVC 153

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 119
           +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFS DGK +L++T
Sbjct: 154 SFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTSLKFSQDGKLILMST 213

Query: 120 TNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
               + ++DA+ G     F     S     EA+FTPD Q+++ GS DG +H WN  +  +
Sbjct: 214 NGGFLRLVDAFKGAVMHTFGGYNNSKAVTLEASFTPDSQFIMIGSEDGKIHVWNCESGMK 273

Query: 179 VACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 213
           VA  +G + G + CL++ P+   F +A S ++FW+P
Sbjct: 274 VAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Xenopus laevis (taxid: 8355)

>sp|O60137|SWD2_SCHPO Set1 complex component swd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swd2 PE=3 SV=1

 Score =  117 bits (294), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 102/182 (56%), Gaps = 14/182 (7%)

Query: 4   NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFD 63
           NR LRYF GHK+ V S+ +SP +++F+S SLD+++R+WDLR   CQG+L +      AFD
Sbjct: 102 NRYLRYFPGHKQTVTSIDVSPADETFLSASLDNTIRLWDLRSPNCQGLLNVSSPVVAAFD 161

Query: 64  QQGLVFA-VAMEAGAIKLFDSRSYDKGPFD----TFLVGGDTAEVCDIKFSNDGKSMLLT 118
             GL+FA V+     I L++ +S+D  PF     TFL       + +++FS DGK +LLT
Sbjct: 162 ATGLIFASVSERKYKISLYNIKSFDARPFQDIPLTFLPPH--VRIANVEFSTDGKYLLLT 219

Query: 119 TTNNNIYVLDAYGGEKRCGFSLEPSPNTN-------TEATFTPDGQYVVSGSGDGTLHAW 171
           T N+  YV+DAY G +      + S  T          A  +PD +++ +   +  L  +
Sbjct: 220 TGNDFHYVIDAYSGSELLRVPSKVSTKTQDGNLTYYASACMSPDSKFLFTSYDNEHLCMY 279

Query: 172 NI 173
            +
Sbjct: 280 QL 281

The Set1 complex specifically methylates 'Lys-4' of histone H3.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9UT39|YIQ4_SCHPO Uncharacterized WD repeat-containing protein C824.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.04 PE=4 SV=1

 Score =  116 bits (290), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 120/240 (50%), Gaps = 27/240 (11%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRGRPT 59
           +YDN+ + YF GH + V S+ +SP+ D F+S + D ++++W +  ++ C G L L     
Sbjct: 95  IYDNKRISYFSGHTDIVSSIEVSPIEDQFVSTANDKTLKLWKMNQSSRCLGNLDLPSLGI 154

Query: 60  VAFDQQGLVFAVAMEA-GAIKLFDSRSYDKGPFDTFLVGGD-----------TAEVCDIK 107
            A+D  GLVFAVA  +   I L+D R+Y   PF TF +                E   ++
Sbjct: 155 PAYDPTGLVFAVACHSLSRIFLYDVRNYGSDPFSTFTIDDSRYLSRFSFPPMMPEWKHME 214

Query: 108 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNT----EATFTPDGQYVVSG 162
           FSNDGK +LL+T  N  Y+LDA+ G+        +  P +N       TF P G +V+  
Sbjct: 215 FSNDGKCILLSTRANVHYILDAFSGDVLSRLEDFQELPFSNNFHGGSTTFVPQGNFVIGS 274

Query: 163 SGDGTLHAWNI--------NTR-NEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIP 213
           + D TL+ WN+         TR  E    + +I     +K+ PR    + A S L FW+P
Sbjct: 275 ADDRTLNVWNLRHTFHHKGKTRPPEHRIVSQSIINPGLVKYNPRYDQLLTAGSQLVFWLP 334

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P36104|SWD2_YEAST COMPASS component SWD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWD2 PE=1 SV=1

 Score =  110 bits (275), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 17/225 (7%)

Query: 4   NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFD 63
           N+ LRYF GH   V  L M+PVND+F+S S D SVR+WDL+++  Q I+       +A+D
Sbjct: 103 NQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQVIIPSLVPNCIAYD 162

Query: 64  QQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEVCDIKFSNDGKSMLLTTTN 121
             GLVFA+   E   I L++ +   +GPF    +   T ++   ++FSN+GK +L+ ++ 
Sbjct: 163 PSGLVFALGNPENFEIGLYNLKKIQEGPFLIIKINDATFSQWNKLEFSNNGKYLLVGSSI 222

Query: 122 NNIYVLDAYGGEKRC------GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI-- 173
               + DA+ G++         F +    ++ + A FTPDG++V+    DG +  WN   
Sbjct: 223 GKHLIFDAFTGQQLFELIGTRAFPMREFLDSGS-ACFTPDGEFVLGTDYDGRIAIWNHSD 281

Query: 174 NTRNEVACWNGNIGVVA------CLKWAPRRAMFVAASSVLSFWI 212
           +  N+V    G I  V+       + + P+ +MFV A   + F++
Sbjct: 282 SISNKVLRPQGFIPCVSHETCPRSIAFNPKYSMFVTADETVDFYV 326

Involved in mediating RNA polymerase II termination. Component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. Component of the APT complex, which may be involved in polyadenylation-independent transcript 3'-end formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
225452366	339	PREDICTED: WD repeat-containing protein	1.0	0.693	0.855	1e-120
296087619	338	unnamed protein product [Vitis vinifera]	1.0	0.695	0.855	1e-120
224055555	329	predicted protein [Populus trichocarpa]	0.940	0.671	0.891	1e-118
255560888	338	COMPASS component SWD2, putative [Ricinu	0.919	0.639	0.912	1e-117
449446692	337	PREDICTED: WD repeat-containing protein	1.0	0.697	0.825	1e-115
449524044	242	PREDICTED: WD repeat-containing protein	1.0	0.971	0.825	1e-114
224141285	328	predicted protein [Populus trichocarpa]	0.940	0.673	0.855	1e-114
359807248	334	uncharacterized protein LOC100776353 [Gl	0.927	0.652	0.857	1e-111
224029213	318	unknown [Zea mays]	0.919	0.679	0.861	1e-111
226501628	318	set1 complex component swd2 [Zea mays] g	0.919	0.679	0.861	1e-111

>gi|225452366|ref|XP_002275160.1| PREDICTED: WD repeat-containing protein 82-B-like [Vitis vinifera]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/236 (85%), Positives = 220/236 (93%), Gaps = 1/236 (0%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           MYDNR LRYFKGHKERV+SLCMSP+NDSFMSGSLDHSVRIWDLRVN+CQGILRLRGRPTV
Sbjct: 102 MYDNRCLRYFKGHKERVVSLCMSPINDSFMSGSLDHSVRIWDLRVNSCQGILRLRGRPTV 161

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
           A+DQQGLVFAVAME GAIKLFDSRSYDKGPFDTF VGGDTAEVCDIKFSNDGKSMLLTTT
Sbjct: 162 AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFFVGGDTAEVCDIKFSNDGKSMLLTTT 221

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           NNNIYVLDAYGGEKRCGFSLEPSP+T  EATFTPDGQYVVSGSGDGTLHAW+I+ R+EVA
Sbjct: 222 NNNIYVLDAYGGEKRCGFSLEPSPSTTIEATFTPDGQYVVSGSGDGTLHAWSISMRHEVA 281

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDE-STDPQATVKSDQV 235
           CWN NIGV +CLKWAPRRAMFVAAS+VL+FWIPN S ++ D  +TDP+A  +S+ +
Sbjct: 282 CWNSNIGVTSCLKWAPRRAMFVAASTVLTFWIPNASKSTADPGNTDPEAGPQSEHI 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087619|emb|CBI34875.3| unnamed protein product [Vitis vinifera]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/236 (85%), Positives = 220/236 (93%), Gaps = 1/236 (0%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           MYDNR LRYFKGHKERV+SLCMSP+NDSFMSGSLDHSVRIWDLRVN+CQGILRLRGRPTV
Sbjct: 101 MYDNRCLRYFKGHKERVVSLCMSPINDSFMSGSLDHSVRIWDLRVNSCQGILRLRGRPTV 160

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
           A+DQQGLVFAVAME GAIKLFDSRSYDKGPFDTF VGGDTAEVCDIKFSNDGKSMLLTTT
Sbjct: 161 AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFFVGGDTAEVCDIKFSNDGKSMLLTTT 220

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           NNNIYVLDAYGGEKRCGFSLEPSP+T  EATFTPDGQYVVSGSGDGTLHAW+I+ R+EVA
Sbjct: 221 NNNIYVLDAYGGEKRCGFSLEPSPSTTIEATFTPDGQYVVSGSGDGTLHAWSISMRHEVA 280

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDE-STDPQATVKSDQV 235
           CWN NIGV +CLKWAPRRAMFVAAS+VL+FWIPN S ++ D  +TDP+A  +S+ +
Sbjct: 281 CWNSNIGVTSCLKWAPRRAMFVAASTVLTFWIPNASKSTADPGNTDPEAGPQSEHI 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055555|ref|XP_002298537.1| predicted protein [Populus trichocarpa] gi|222845795|gb|EEE83342.1| predicted protein [Populus trichocarpa]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 197/221 (89%), Positives = 211/221 (95%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           MYDNR LRYFKGHKERV+SLCMSP+NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV
Sbjct: 104 MYDNRCLRYFKGHKERVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 163

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
           A+DQQGLVFAVAME GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT
Sbjct: 164 AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 223

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           +NNIYVLDAYGGEKRCGFSLEPSPNT  EATFTPDGQYVVSGSGDGTLHAWNIN RNEV+
Sbjct: 224 SNNIYVLDAYGGEKRCGFSLEPSPNTKIEATFTPDGQYVVSGSGDGTLHAWNINMRNEVS 283

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTD 221
           CWN +IG+ +CLKWAPRRAMFVAAS+VL+FWIP+ S ++ +
Sbjct: 284 CWNSHIGIASCLKWAPRRAMFVAASTVLTFWIPDSSKSTVE 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560888|ref|XP_002521457.1| COMPASS component SWD2, putative [Ricinus communis] gi|223539356|gb|EEF40947.1| COMPASS component SWD2, putative [Ricinus communis]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/216 (91%), Positives = 205/216 (94%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           MYDNR LRYFKGHK+RV+SLCMSP+NDSFMS SLDHSVRIWDLRVNACQGIL LRGRPTV
Sbjct: 101 MYDNRCLRYFKGHKDRVVSLCMSPINDSFMSASLDHSVRIWDLRVNACQGILHLRGRPTV 160

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
           A+DQQGLVFAVAME GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT
Sbjct: 161 AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 220

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           +NNIYVLDAYGGEKRCGFSLEPSPNT  EATFTPDGQYVVSGSGDGTLHAWNIN RNEVA
Sbjct: 221 SNNIYVLDAYGGEKRCGFSLEPSPNTTIEATFTPDGQYVVSGSGDGTLHAWNINMRNEVA 280

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPS 216
            WN +IGV +C KWAPRRAMFVAASSVL+FWIPNPS
Sbjct: 281 SWNSHIGVASCFKWAPRRAMFVAASSVLTFWIPNPS 316

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446692|ref|XP_004141105.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/235 (82%), Positives = 212/235 (90%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           MYDNR LRYFKGHK+RV+SLCMSP+NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV
Sbjct: 101 MYDNRCLRYFKGHKDRVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 160

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
           A+DQQGLVFAVAME GAIKLFDSRSYDKGPFDTFLVGGD AEV DIKFSNDGKSMLLTTT
Sbjct: 161 AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDMAEVFDIKFSNDGKSMLLTTT 220

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           NNNIYVLDAYGGEK+CGFSLEPSPNT  EATFTPDGQYVVSGSGDGTLHAWNIN R EVA
Sbjct: 221 NNNIYVLDAYGGEKQCGFSLEPSPNTTIEATFTPDGQYVVSGSGDGTLHAWNINKRAEVA 280

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDESTDPQATVKSDQV 235
            WN +IGV +CLKWAPRR MFVAASSVL+FWIPN + ++ +   +  +  +++ +
Sbjct: 281 SWNSHIGVASCLKWAPRRVMFVAASSVLTFWIPNATKSTGESGMEFDSHTQAEHI 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524044|ref|XP_004169033.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/235 (82%), Positives = 212/235 (90%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           MYDNR LRYFKGHK+RV+SLCMSP+NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV
Sbjct: 6   MYDNRCLRYFKGHKDRVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 65

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
           A+DQQGLVFAVAME GAIKLFDSRSYDKGPFDTFLVGGD AEV DIKFSNDGKSMLLTTT
Sbjct: 66  AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDMAEVFDIKFSNDGKSMLLTTT 125

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           NNNIYVLDAYGGEK+CGFSLEPSPNT  EATFTPDGQYVVSGSGDGTLHAWNIN R EVA
Sbjct: 126 NNNIYVLDAYGGEKQCGFSLEPSPNTTIEATFTPDGQYVVSGSGDGTLHAWNINKRAEVA 185

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDESTDPQATVKSDQV 235
            WN +IGV +CLKWAPRR MFVAASSVL+FWIPN + ++ +   +  +  +++ +
Sbjct: 186 SWNSHIGVASCLKWAPRRVMFVAASSVLTFWIPNATKSTGESGMEFDSHTQAEHI 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141285|ref|XP_002324005.1| predicted protein [Populus trichocarpa] gi|222867007|gb|EEF04138.1| predicted protein [Populus trichocarpa]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 189/221 (85%), Positives = 208/221 (94%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           +YDNR LRYFKGHK++V+SLCMSP+NDSFMS SLDHS+RIWDLRVNACQGIL LRGRPTV
Sbjct: 101 LYDNRCLRYFKGHKDKVVSLCMSPINDSFMSSSLDHSIRIWDLRVNACQGILHLRGRPTV 160

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
           A+DQQGLVFAVAME GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT
Sbjct: 161 AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 220

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           +NNIYVLDAYGG+KRCGFSLEPSP+T  EATFTPDGQYVVSGSGDGTLHAWNIN +NEV+
Sbjct: 221 SNNIYVLDAYGGDKRCGFSLEPSPSTTIEATFTPDGQYVVSGSGDGTLHAWNINMQNEVS 280

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTD 221
           CWN +IG+ +CLKWAPRRAMFVAAS+VL+FWIP+ S  + D
Sbjct: 281 CWNSHIGIASCLKWAPRRAMFVAASTVLTFWIPDSSKPTVD 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807248|ref|NP_001241111.1| uncharacterized protein LOC100776353 [Glycine max] gi|255647114|gb|ACU24025.1| unknown [Glycine max]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/218 (85%), Positives = 200/218 (91%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           MYDNR LRYFKGHK+RV+SLCMSP+NDSFMSGSLDHSVRIWDLRVNACQGIL LRGRP V
Sbjct: 103 MYDNRCLRYFKGHKQRVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILHLRGRPAV 162

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
           A+DQQGLVFAVAME GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT
Sbjct: 163 AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 222

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           NNNIYVLDAYGGEKRCGFSLEPSP T  EATFTPDG+Y+V+GSG GT+  W+I T+NEVA
Sbjct: 223 NNNIYVLDAYGGEKRCGFSLEPSPGTPIEATFTPDGKYMVAGSGSGTMQVWSIETKNEVA 282

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSN 218
           CW  +IGV +CLKWAPRRAMF AASSVL+FWIPN  S 
Sbjct: 283 CWTSHIGVPSCLKWAPRRAMFAAASSVLTFWIPNNDSK 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224029213|gb|ACN33682.1| unknown [Zea mays]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/216 (86%), Positives = 199/216 (92%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           +YDNR LRYFKGHK+RV+SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP+V
Sbjct: 102 LYDNRCLRYFKGHKDRVVSLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSV 161

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
           A+DQQGLVFAVAME GAIKLFDSRSYDKGPFDTFLVGGDTAEV DIKFSNDGKSMLLTTT
Sbjct: 162 AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTT 221

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           NN+IYVLDAYGG+KRCGFSLEPSPN   EA FTPDGQYV+SGSGDGTLHAWNINT  E+A
Sbjct: 222 NNHIYVLDAYGGDKRCGFSLEPSPNVTNEAAFTPDGQYVISGSGDGTLHAWNINTVQEIA 281

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPS 216
           CWN +IG +  LKWAPRRAMF  AS+ L+FWIPN S
Sbjct: 282 CWNSHIGPITALKWAPRRAMFATASTALTFWIPNQS 317

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226501628|ref|NP_001152284.1| set1 complex component swd2 [Zea mays] gi|195654651|gb|ACG46793.1| set1 complex component swd2 [Zea mays]

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/216 (86%), Positives = 199/216 (92%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           +YDNR LRYFKGHK+RV+SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP+V
Sbjct: 102 LYDNRCLRYFKGHKDRVVSLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSV 161

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
           A+DQQGLVFAVAME GAIKLFDSRSYDKGPFDTFLVGGDTAEV DIKFSNDGKSMLLTTT
Sbjct: 162 AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTT 221

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           NN+IYVLDAYGG+KRCGFSLEPSPN   EA FTPDGQYV+SGSGDGTLHAWNINT  E+A
Sbjct: 222 NNHIYVLDAYGGDKRCGFSLEPSPNVTNEAAFTPDGQYVISGSGDGTLHAWNINTVQEIA 281

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPS 216
           CWN +IG +  LKWAPRRAMF  AS+ L+FWIPN S
Sbjct: 282 CWNSHIGPITALKWAPRRAMFATASTALTFWIPNQS 317

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2222612	330	AT5G14530 "AT5G14530" [Arabido	0.965	0.687	0.816	1e-100
DICTYBASE|DDB_G0278945	319	DDB_G0278945 "WD repeat-contai	0.919	0.677	0.481	5.3e-56
TAIR|locus:2154996	331	AT5G66240 "AT5G66240" [Arabido	0.914	0.649	0.493	9.9e-55
FB|FBgn0032030	317	Wdr82 [Drosophila melanogaster	0.897	0.665	0.449	1.5e-49
UNIPROTKB|Q5ZMV7	313	WDR82 "WD repeat-containing pr	0.906	0.680	0.439	2.3e-48
UNIPROTKB|E2RGF2	313	WDR82 "Uncharacterized protein	0.906	0.680	0.439	2.3e-48
UNIPROTKB|Q6UXN9	313	WDR82 "WD repeat-containing pr	0.906	0.680	0.439	2.3e-48
UNIPROTKB|F2Z5U3	313	WDR82 "Uncharacterized protein	0.906	0.680	0.439	2.3e-48
MGI|MGI:1924555	313	Wdr82 "WD repeat domain contai	0.906	0.680	0.439	2.3e-48
ZFIN|ZDB-GENE-030131-333	600	wdr82 "WD repeat domain contai	0.876	0.343	0.444	2.3e-46

TAIR|locus:2222612 AT5G14530 "AT5G14530" [Arabidopsis thaliana (taxid:3702)]

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 187/229 (81%), Positives = 202/229 (88%)

Query:     1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
             MYDNRILRYFKGHK+RV+SLCMSP+NDSFMSGSLD SVR+WDLRVNACQGIL LRGRP V
Sbjct:   101 MYDNRILRYFKGHKDRVVSLCMSPINDSFMSGSLDRSVRLWDLRVNACQGILHLRGRPAV 160

Query:    61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
             A+DQQGLVFA+AME GA+KLFDSR YDKGPFDTFLVGGDTAEV DIKFSNDGKSMLLTTT
Sbjct:   161 AYDQQGLVFAIAMEGGAVKLFDSRCYDKGPFDTFLVGGDTAEVNDIKFSNDGKSMLLTTT 220

Query:   121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
             NNNIYVLDAY GEK+CGFSLEPS  T  EATFTPDG+YV+SGSGDGTLHAWNI   +EVA
Sbjct:   221 NNNIYVLDAYRGEKKCGFSLEPSQGTPIEATFTPDGKYVLSGSGDGTLHAWNIENPSEVA 280

Query:   181 CWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNST--DESTDPQ 227
              W  NIGVV+CLKWAPRRAMFVAAS+VL+FWIPN   +    D  TD Q
Sbjct:   281 RWENNIGVVSCLKWAPRRAMFVAASTVLTFWIPNDGESPAPADPPTDQQ 329

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

DICTYBASE|DDB_G0278945 DDB_G0278945 "WD repeat-containing protein 82" [Dictyostelium discoideum (taxid:44689)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 105/218 (48%), Positives = 150/218 (68%)

Query:     1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
             ++DN+ L+YFKGH+ +V+S+ MSP+ND F+SGSLD ++R+WDLR N CQG+LR  GRP V
Sbjct:   100 LHDNKYLKYFKGHRNKVVSISMSPINDMFLSGSLDDTIRMWDLRTNVCQGLLRRNGRPAV 159

Query:    61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEVCDIKFSNDGKSMLLTT 119
             +FD QG++FA A+    IKL+D R+YDKGPF +F +      E   +KF+ DGK +LL+T
Sbjct:   160 SFDPQGIIFATAVSVNTIKLYDLRNYDKGPFSSFSIDHPIPVEWTSMKFTADGKYILLST 219

Query:   120 TNNNIYVLDAYGGEKRCGFSLEPSPNTNT-EATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
               N I+++D++ GE +  ++   + N +  E++F+PD QYV+SGS DGT+H W   T  E
Sbjct:   220 KTNIIFLIDSFTGEVKQRYTSFKNDNGSVIESSFSPDAQYVLSGSEDGTVHIWKTLTGEE 279

Query:   179 VACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPS 216
             VA W G+   V  ++W PR  M   A S L+FWIPN S
Sbjct:   280 VAVWGGHSSTVGRVQWNPRSMMAATACSNLAFWIPNDS 317

GO:0030587 "sorocarp development" evidence=IMP

TAIR|locus:2154996 AT5G66240 "AT5G66240" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 107/217 (49%), Positives = 149/217 (68%)

Query:     1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
             ++DN+ LRYFKGH +RV+SL +    + F+SGSLD +V +WD RV  CQG+LR++GRP  
Sbjct:   107 LHDNKYLRYFKGHHDRVVSLSLCSGGECFISGSLDRTVLLWDQRVEKCQGLLRVQGRPAA 166

Query:    61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
             A+D QGL+FA+A   G I++FD+R Y+KGPF+ F VGGD +E   +KFSNDG+ MLLTT 
Sbjct:   167 AYDDQGLIFAIAF-GGYIRMFDARMYEKGPFEIFSVGGDLSEANVVKFSNDGRLMLLTTM 225

Query:   121 NNNIYVLDAYGGEKRCGFSLEPSPNTNT-EATFTPDGQYVVSGSGDGTLHAWNINTRNEV 179
             +  I+VLD++ G     FS++P    +T +A F+P+G +VVSGSGDG+ HAW + +  +V
Sbjct:   226 DGFIHVLDSFRGTLLSTFSVKPVAGESTLDAAFSPEGMFVVSGSGDGSTHAWGVRSGKQV 285

Query:   180 ACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPS 216
               W G       +KW P   MFV  SS L+F IP+ S
Sbjct:   286 HSWMGLGSEPPVIKWGPGSPMFVTGSSELAFVIPDLS 322

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

FB|FBgn0032030 Wdr82 [Drosophila melanogaster (taxid:7227)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 98/218 (44%), Positives = 151/218 (69%)

Query:     1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
             ++DN+ LRYF GH ++VISLC+SPV D+F+SGSLD ++R+WDLR   CQG++ L GRP  
Sbjct:    96 LHDNKYLRYFPGHTKKVISLCISPVEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSGRPIA 155

Query:    61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD---IKFSNDGKSMLL 117
             A+D +GL+FA  + + +IKL+D RS+DKGPF TF +  +  + CD   +KFS DGK++L+
Sbjct:   156 AYDPEGLIFAAGVNSESIKLYDLRSFDKGPFVTFKLNQE--KECDWTGLKFSRDGKTILI 213

Query:   118 TTTNNNIYVLDAYGGEKRCGFSLEPS-PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 176
             +T  + I ++DA+ G     F+  P+      EA+F+PD Q++ SGS DG +H WN +T 
Sbjct:   214 STNGSVIRLVDAFHGTPLQTFTGYPNNKGIPIEASFSPDSQFIFSGSTDGRVHIWNADTG 273

Query:   177 NEVACWNGNI-GVVACLKWAPRRAMFVAASSVLSFWIP 213
             N+V+  NG+  G V C+++ P+  M  +A + ++FW+P
Sbjct:   274 NKVSVLNGDHPGPVQCVQFNPKYMMLASACTNMAFWLP 311

GO:0008352 "katanin complex" evidence=ISS

GO:0051013 "microtubule severing" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0080182 "histone H3-K4 trimethylation" evidence=IMP

GO:0035097 "histone methyltransferase complex" evidence=IDA

UNIPROTKB|Q5ZMV7 WDR82 "WD repeat-containing protein 82" [Gallus gallus (taxid:9031)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 95/216 (43%), Positives = 145/216 (67%)

Query:     1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
             ++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  
Sbjct:    94 LHDNKYIRYFPGHTKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVC 153

Query:    61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 119
             +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +L++T
Sbjct:   154 SFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILIST 213

Query:   120 TNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
                 I ++DA+ G     F     S     EA+FTPD Q+++ GS DG +H WN  +  +
Sbjct:   214 NGGFIRLIDAFKGAVLHTFGGYNNSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGMK 273

Query:   179 VACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 213
             VA  +G + G + CL++ P+   F +A S ++FW+P
Sbjct:   274 VAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2RGF2 WDR82 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 95/216 (43%), Positives = 146/216 (67%)

Query:     1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
             ++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  
Sbjct:    94 LHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVC 153

Query:    61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 119
             +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +L++T
Sbjct:   154 SFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILIST 213

Query:   120 TNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
               + I ++DA+ G     F     S     EA+FTPD Q+++ GS DG +H WN  +  +
Sbjct:   214 NGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIK 273

Query:   179 VACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 213
             VA  +G + G + CL++ P+   F +A S ++FW+P
Sbjct:   274 VAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

UNIPROTKB|Q6UXN9 WDR82 "WD repeat-containing protein 82" [Homo sapiens (taxid:9606)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 95/216 (43%), Positives = 146/216 (67%)

Query:     1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
             ++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  
Sbjct:    94 LHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVC 153

Query:    61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 119
             +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +L++T
Sbjct:   154 SFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILIST 213

Query:   120 TNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
               + I ++DA+ G     F     S     EA+FTPD Q+++ GS DG +H WN  +  +
Sbjct:   214 NGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIK 273

Query:   179 VACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 213
             VA  +G + G + CL++ P+   F +A S ++FW+P
Sbjct:   274 VAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309

GO:0003682 "chromatin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0000785 "chromatin" evidence=IDA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

UNIPROTKB|F2Z5U3 WDR82 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 95/216 (43%), Positives = 146/216 (67%)

Query:     1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
             ++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  
Sbjct:    94 LHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVC 153

Query:    61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 119
             +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +L++T
Sbjct:   154 SFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILIST 213

Query:   120 TNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
               + I ++DA+ G     F     S     EA+FTPD Q+++ GS DG +H WN  +  +
Sbjct:   214 NGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIK 273

Query:   179 VACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 213
             VA  +G + G + CL++ P+   F +A S ++FW+P
Sbjct:   274 VAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

MGI|MGI:1924555 Wdr82 "WD repeat domain containing 82" [Mus musculus (taxid:10090)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 95/216 (43%), Positives = 146/216 (67%)

Query:     1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
             ++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  
Sbjct:    94 LHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVC 153

Query:    61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 119
             +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +L++T
Sbjct:   154 SFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILIST 213

Query:   120 TNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
               + I ++DA+ G     F     S     EA+FTPD Q+++ GS DG +H WN  +  +
Sbjct:   214 NGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIK 273

Query:   179 VACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIP 213
             VA  +G + G + CL++ P+   F +A S ++FW+P
Sbjct:   274 VAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309

GO:0000785 "chromatin" evidence=ISO

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO;IMP

GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO

ZFIN|ZDB-GENE-030131-333 wdr82 "WD repeat domain containing 82" [Danio rerio (taxid:7955)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 93/209 (44%), Positives = 139/209 (66%)

Query:     1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
             ++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  
Sbjct:    94 LHDNKYIRYFPGHNKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVC 153

Query:    61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 119
             +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  + T E   +KFSNDGK +L++T
Sbjct:   154 SFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKLQYERTCEWTGLKFSNDGKLILVST 213

Query:   120 TNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
                 + VLDA+ G     F     S     EA+FTPD Q+++ GS DG +H WN  +  +
Sbjct:   214 NGGTLRVLDAFKGAVLHSFGGYNNSKGVILEASFTPDSQFIMIGSEDGKIHVWNAESGMK 273

Query:   179 VACWNG-NIGVVACLKWAPRRAMFVAASS 206
             VA  +G + G V CL++ P+   F +A S
Sbjct:   274 VALLDGKHTGPVTCLQFNPKFMTFASACS 302

GO:0003779 "actin binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-08
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-05
COG0823	425	COG0823, TolB, Periplasmic component of the Tol bi	6e-05
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	3e-04
PRK05137	435	PRK05137, tolB, translocation protein TolB; Provis	0.002
PRK04922	433	PRK04922, tolB, translocation protein TolB; Provis	0.003
PRK02889	427	PRK02889, tolB, translocation protein TolB; Provis	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 95.1 bits (237), Expect = 2e-23
 Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 8/206 (3%)

Query: 3   DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TV 60
               +R   GH   V S+  SP      S S D ++++WD+    C   LR       +V
Sbjct: 82  TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
           AF   G   A + + G IKL+D R+       T    G T EV  + FS DG+ +L +++
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRT--GKCVATLT--GHTGEVNSVAFSPDGEKLLSSSS 197

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           +  I + D   G  +C  +L    N      F+PDG  + SGS DGT+  W++ T   V 
Sbjct: 198 DGTIKLWDLSTG--KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASS 206
             +G+   V  L W+P      + S+
Sbjct: 256 TLSGHTNSVTSLAWSPDGKRLASGSA 281

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 88.2 bits (219), Expect = 8e-21
 Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 8/202 (3%)

Query: 7   LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQ 64
            R  KGH   V  +  SP      +GS D ++++WDL        L+    P   VA   
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61

Query: 65  QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 124
            G   A       I+L+D  +       T    G T+ V  + FS DG+ +  ++ +  I
Sbjct: 62  DGTYLASGSSDKTIRLWDLET--GECVRTL--TGHTSYVSSVAFSPDGRILSSSSRDKTI 117

Query: 125 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG 184
            V D   G+  C  +L    +      F+PDG +V S S DGT+  W++ T   VA   G
Sbjct: 118 KVWDVETGK--CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG 175

Query: 185 NIGVVACLKWAPRRAMFVAASS 206
           + G V  + ++P     +++SS
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSS 197

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 73.2 bits (178), Expect = 5e-15
 Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 11/210 (5%)

Query: 3   DNRILRYFKGHKERVISLCMSPVNDSFMSGS-LDHSVRIWDLRVNACQGILRLRGRP--T 59
             +++R  +GH E V SL  SP      SGS LD ++++WDLR       L     P  +
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203

Query: 60  VAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 118
           +AF   G L+ A     G I+L+D  +   G      + G +  V    FS DG  +   
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLST---GKLLRSTLSGHSDSVV-SSFSPDGSLLASG 259

Query: 119 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
           +++  I + D          +L    ++     F+PDG+ + SGS DGT+  W++ T   
Sbjct: 260 SSDGTIRLWDLRSS-SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318

Query: 179 VACWN--GNIGVVACLKWAPRRAMFVAASS 206
           ++     G+ G V+ L ++P  ++ V+  S
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.0 bits (175), Expect = 1e-14
 Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 14/227 (6%)

Query: 6   ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVA 61
           +     GH + V+S   SP      SGS D ++R+WDLR ++   +  L G      +VA
Sbjct: 234 LRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSL-LRTLSGHSSSVLSVA 291

Query: 62  FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN 121
           F   G + A     G ++L+D  +       T    G    V  + FS DG  ++   ++
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK--GHEGPVSSLSFSPDGSLLVSGGSD 349

Query: 122 NN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           +  I + D   G+           +     +F+PDG+ V SGS DGT+  W+++T + + 
Sbjct: 350 DGTIRLWDLRTGKP---LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR 406

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASS--VLSFWIPNPSSNSTDESTD 225
             +G+   V  L ++P      + SS   +  W    S  S   S D
Sbjct: 407 NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPD 453

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.0 bits (175), Expect = 1e-14
 Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 12/194 (6%)

Query: 2   YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR---- 57
             + +LR   GH   V+S+  SP      SGS D +VR+WDL        L L+G     
Sbjct: 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331

Query: 58  PTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML 116
            +++F   G +      + G I+L+D      G     L G     V  + FS DG+ + 
Sbjct: 332 SSLSFSPDGSLLVSGGSDDGTIRLWD---LRTGKPLKTLEGHSN--VLSVSFSPDGRVVS 386

Query: 117 LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 176
             +T+  + + D   G      +L+   +  T   F+PDG+ + SGS D T+  W++ T 
Sbjct: 387 SGSTDGTVRLWDLSTGSLL--RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Query: 177 NEVACWNGNIGVVA 190
            +   ++ +  V+A
Sbjct: 445 LKSVSFSPDGKVLA 458

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 6/119 (5%)

Query: 10  FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGL 67
             GH   V S+  SP  +  +S S D ++++WDL    C G LR       +VAF   G 
Sbjct: 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY 232

Query: 68  VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 126
           + A   E G I+++D R+ +        + G T  V  + +S DGK +   + +  I +
Sbjct: 233 LLASGSEDGTIRVWDLRTGEC----VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 6e-08
 Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 14/206 (6%)

Query: 10  FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-----VNACQGILRLRGRPTVAFDQ 64
            +GH++ + S+  SP  +  +SGS D ++++WDL      + + +G+             
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 65  QGLVFAVAMEA--GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTN 121
            G    +A  +  G +KL+D  +  K         G +  V  + FS DGK +    + +
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLE---GHSESVTSLAFSPDGKLLASGSSLD 177

Query: 122 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRNEVA 180
             I + D   G+     +    P ++    F+PDG   + SGS DGT+  W+++T   + 
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSS--LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR 235

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASS 206
                        ++P  ++  + SS
Sbjct: 236 STLSGHSDSVVSSFSPDGSLLASGSS 261

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 3  DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD 42
             +L+  KGH   V S+  SP      SGS D ++++WD
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 5  RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD 42
          ++LR  KGH   V S+  SP  +   SGS D +VR+WD
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 10  FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD 42
             GH   V SL  SP      SGS D ++RIWD
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 105 DIKFSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 161
              FS DG  +  +++ +   +IY++D  G        L      NT  +++PDG  +V 
Sbjct: 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGINTSPSWSPDGSKIVF 298

Query: 162 GSGDG 166
            S  G
Sbjct: 299 TSDRG 303

Length = 425

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 108 FSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 160
           FS DG  + ++ +   N +IYV+D  G +      L   P  +TE +++PDG+ + 
Sbjct: 241 FSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---RLTNGPGIDTEPSWSPDGKSIA 293

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|235351 PRK05137, tolB, translocation protein TolB; Provisional

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 108 FSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 160
           FS DG+ ++++ +     +IY +D   G       L  SP  +T  +++PDG  +V
Sbjct: 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT---RLTDSPAIDTSPSYSPDGSQIV 305

Length = 435

>gnl|CDD|179892 PRK04922, tolB, translocation protein TolB; Provisional

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 108 FSNDGKSMLLTTT---NNNIYVLD-AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 163
           FS DG+ + LT +   N  IYV+D       R    L      +TE T+ PDG+ +   S
Sbjct: 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----LTNHFGIDTEPTWAPDGKSIYFTS 310

Query: 164 GDG 166
             G
Sbjct: 311 DRG 313

Length = 433

>gnl|CDD|235083 PRK02889, tolB, translocation protein TolB; Provisional

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 109 SNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 159
           S DG+++ +  +   N+ IY ++A G   R    L  S   +TE  F+PDG+ +
Sbjct: 248 SPDGRTLAVALSRDGNSQIYTVNADGSGLR---RLTQSSGIDTEPFFSPDGRSI 298

Length = 427

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.98
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.98
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.87
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.86
KOG1188	376	consensus WD40 repeat protein [General function pr	99.86
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
PRK01742	429	tolB translocation protein TolB; Provisional	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.84
KOG0649	325	consensus WD40 repeat protein [General function pr	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.83
KOG1310	758	consensus WD40 repeat protein [General function pr	99.83
PRK03629	429	tolB translocation protein TolB; Provisional	99.82
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.82
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.82
PRK04922	433	tolB translocation protein TolB; Provisional	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG1963	792	consensus WD40 repeat protein [General function pr	99.81
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
PRK05137	435	tolB translocation protein TolB; Provisional	99.81
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.81
PRK11028	330	6-phosphogluconolactonase; Provisional	99.81
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
PRK02889	427	tolB translocation protein TolB; Provisional	99.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.8
KOG4227	609	consensus WD40 repeat protein [General function pr	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.79
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.79
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.78
COG2319	466	FOG: WD40 repeat [General function prediction only	99.78
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.78
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
KOG2139	445	consensus WD40 repeat protein [General function pr	99.77
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.77
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.76
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.76
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.76
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.75
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.75
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.75
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.74
PRK00178	430	tolB translocation protein TolB; Provisional	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.74
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
PRK04792	448	tolB translocation protein TolB; Provisional	99.72
KOG4547	541	consensus WD40 repeat-containing protein [General	99.72
KOG4227	609	consensus WD40 repeat protein [General function pr	99.72
KOG1334	559	consensus WD40 repeat protein [General function pr	99.71
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.71
KOG2321	703	consensus WD40 repeat protein [General function pr	99.71
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
PRK01029	428	tolB translocation protein TolB; Provisional	99.7
KOG1963	792	consensus WD40 repeat protein [General function pr	99.7
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.69
PRK03629	429	tolB translocation protein TolB; Provisional	99.68
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.68
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.68
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.67
KOG2139	445	consensus WD40 repeat protein [General function pr	99.66
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.65
PRK05137	435	tolB translocation protein TolB; Provisional	99.65
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.59
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.59
PRK04043	419	tolB translocation protein TolB; Provisional	99.58
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.58
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.58
KOG2321	703	consensus WD40 repeat protein [General function pr	99.55
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.54
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.54
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.54
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.53
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.52
PRK00178	430	tolB translocation protein TolB; Provisional	99.52
PRK01029	428	tolB translocation protein TolB; Provisional	99.5
PRK04792	448	tolB translocation protein TolB; Provisional	99.48
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.48
KOG2315	566	consensus Predicted translation initiation factor	99.47
KOG2695	425	consensus WD40 repeat protein [General function pr	99.46
KOG4547	541	consensus WD40 repeat-containing protein [General	99.45
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.44
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.44
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.43
KOG1310	758	consensus WD40 repeat protein [General function pr	99.41
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.41
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.4
KOG2314	698	consensus Translation initiation factor 3, subunit	99.4
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.39
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.38
COG4946	668	Uncharacterized protein related to the periplasmic	99.38
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.38
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.37
COG4946	668	Uncharacterized protein related to the periplasmic	99.36
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.36
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.35
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.35
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.34
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.33
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.31
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.31
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.3
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.3
KOG2315	566	consensus Predicted translation initiation factor	99.25
PRK04043	419	tolB translocation protein TolB; Provisional	99.22
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.21
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.21
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.19
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.19
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.17
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.16
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.16
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.16
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.15
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	99.13
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.12
KOG2314	698	consensus Translation initiation factor 3, subunit	99.12
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.11
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.09
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.08
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.08
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.07
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.06
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.03
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.03
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.99
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.99
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.98
KOG2695	425	consensus WD40 repeat protein [General function pr	98.96
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.95
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.94
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.94
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.94
KOG1334	559	consensus WD40 repeat protein [General function pr	98.93
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.93
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.91
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.91
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.91
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.88
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.88
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.85
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.84
KOG3621	726	consensus WD40 repeat-containing protein [General	98.82
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.8
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.79
PRK02888	635	nitrous-oxide reductase; Validated	98.79
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.76
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.72
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.7
COG3391	381	Uncharacterized conserved protein [Function unknow	98.67
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.63
KOG3621	726	consensus WD40 repeat-containing protein [General	98.63
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.61
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.59
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.51
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.5
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.49
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.49
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.48
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.47
PRK02888	635	nitrous-oxide reductase; Validated	98.47
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.46
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.44
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.43
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.42
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.4
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.39
COG3391	381	Uncharacterized conserved protein [Function unknow	98.39
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.39
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.39
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.35
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.33
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.31
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.31
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.27
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.26
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.26
PRK13616	591	lipoprotein LpqB; Provisional	98.23
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.18
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.18
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.12
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.07
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.04
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.02
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.99
PHA02713	557	hypothetical protein; Provisional	97.99
PRK13616	591	lipoprotein LpqB; Provisional	97.99
KOG2395	644	consensus Protein involved in vacuole import and d	97.98
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.97
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.97
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.97
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.96
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.96
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.95
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.95
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.89
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.85
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.82
PHA03098	534	kelch-like protein; Provisional	97.81
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.79
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.73
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.72
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.7
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.68
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.65
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.65
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.64
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.62
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.59
KOG2444	238	consensus WD40 repeat protein [General function pr	97.55
PHA02713	557	hypothetical protein; Provisional	97.53
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.53
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.52
KOG2395	644	consensus Protein involved in vacuole import and d	97.51
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.48
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.45
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.39
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.36
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.32
PHA02790	480	Kelch-like protein; Provisional	97.31
KOG2444	238	consensus WD40 repeat protein [General function pr	97.31
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.29
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.28
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.27
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.25
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.25
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.22
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.18
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.13
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.13
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.04
PHA03098	534	kelch-like protein; Provisional	96.94
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.93
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.88
COG5167	776	VID27 Protein involved in vacuole import and degra	96.87
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.75
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.68
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.67
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.65
PHA02790	480	Kelch-like protein; Provisional	96.65
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.65
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.65
COG4590	733	ABC-type uncharacterized transport system, permeas	96.63
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.61
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.52
KOG2247	615	consensus WD40 repeat-containing protein [General	96.48
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.47
PRK10115	686	protease 2; Provisional	96.46
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.46
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.45
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.39
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.39
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.37
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.37
COG5167	776	VID27 Protein involved in vacuole import and degra	96.31
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.22
COG5276	370	Uncharacterized conserved protein [Function unknow	96.1
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.04
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.0
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.94
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.88
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.84
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.84
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.83
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.82
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.65
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	95.63
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.6
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	95.57
PRK13684	334	Ycf48-like protein; Provisional	95.56
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	95.37
KOG2247	615	consensus WD40 repeat-containing protein [General	95.36
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.35
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.33
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	95.3
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.25
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.05
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.04
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.03
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	95.0
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.94
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.92
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	94.87
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.84
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	94.76
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.72
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.71
PRK13684	334	Ycf48-like protein; Provisional	94.58
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	94.16
COG4590	733	ABC-type uncharacterized transport system, permeas	94.13
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.1
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.1
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.99
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.91
PF12768	281	Rax2: Cortical protein marker for cell polarity	93.62
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.6
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	93.42
PLN02153	341	epithiospecifier protein	93.27
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.25
PLN02193	470	nitrile-specifier protein	93.11
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	92.82
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	92.68
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.55
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.42
PLN02153	341	epithiospecifier protein	92.32
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.24
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	92.22
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.22
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.13
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.13
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.73
COG5276	370	Uncharacterized conserved protein [Function unknow	91.62
PF12768	281	Rax2: Cortical protein marker for cell polarity	91.29
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.1
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	91.03
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.85
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	90.56
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.46
PLN02193	470	nitrile-specifier protein	90.2
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	90.07
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	90.03
PRK10115	686	protease 2; Provisional	89.87
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.72
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	89.6
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.5

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-42  Score=245.65  Aligned_cols=215  Identities=21%  Similarity=0.364  Sum_probs=185.5

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      +-..+.||.++|.|++|+|+|..|++|+.|.++|+||+.+..+..+.++|..-+  ++|+|||+.|++|+.||+|++||.
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp  186 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP  186 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence            445688999999999999999999999999999999999999999999998654  999999999999999999999999


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEcc-----CCCeEEEecCCCcEEEEEcCCCceeeee--------------------
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSN-----DGKSMLLTTTNNNIYVLDAYGGEKRCGF--------------------  138 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~--------------------  138 (235)
                      .+++.   .-..+.+|...|++++|.|     ..++|++++.||.+++||+..++.+..+                    
T Consensus       187 ktg~~---~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliyS  263 (480)
T KOG0271|consen  187 KTGQQ---IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYS  263 (480)
T ss_pred             CCCCc---ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEe
Confidence            88765   3456778999999999976     5678888889999999987543321110                    


Q ss_pred             --------------------------------------------------------------------------------
Q 026679          139 --------------------------------------------------------------------------------  138 (235)
Q Consensus       139 --------------------------------------------------------------------------------  138 (235)
                                                                                                      
T Consensus       264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs  343 (480)
T KOG0271|consen  264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS  343 (480)
T ss_pred             cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence                                                                                            


Q ss_pred             ------------------ccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCE
Q 026679          139 ------------------SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM  200 (235)
Q Consensus       139 ------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  200 (235)
                                        .+.+|..-|+.+.||||++++|+++-|..|++||.++|+.+.++.+|-..|+.++|+.|.++
T Consensus       344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL  423 (480)
T KOG0271|consen  344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL  423 (480)
T ss_pred             CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence                              02234456778999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcc--cceEEeeCCCCCCCCCCC
Q 026679          201 FVAAS--SVLSFWIPNPSSNSTDES  223 (235)
Q Consensus       201 l~~~~--~~i~iw~~~~~~~~~~~~  223 (235)
                      |++++  .++++|++.+.++..-..
T Consensus       424 lVS~SkDsTLKvw~V~tkKl~~DLp  448 (480)
T KOG0271|consen  424 LVSGSKDSTLKVWDVRTKKLKQDLP  448 (480)
T ss_pred             EEEcCCCceEEEEEeeeeeecccCC
Confidence            99999  779999999887664433

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-43  Score=253.06  Aligned_cols=216  Identities=22%  Similarity=0.328  Sum_probs=196.2

Q ss_pred             hhhhhhhhcccccceeEEEeecC--CCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeE
Q 026679            3 DNRILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v   78 (235)
                      +...+..|+||...|.++.|+|.  +..+|||+.||++++|++.+..++..+.+|...+  ++|+|+|++|++++.|.+-
T Consensus       206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW  285 (459)
T KOG0272|consen  206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW  285 (459)
T ss_pred             CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccch
Confidence            45677889999999999999996  4689999999999999999989999999998666  9999999999999999999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      ++||+++...    .....+|...|.+++|+|||..+++|+.|..-++||++++.++..+.  +|...|..++|+|+|..
T Consensus       286 RlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~--gH~k~I~~V~fsPNGy~  359 (459)
T KOG0272|consen  286 RLWDLETKSE----LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA--GHIKEILSVAFSPNGYH  359 (459)
T ss_pred             hhcccccchh----hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec--ccccceeeEeECCCceE
Confidence            9999999775    66778999999999999999999999999999999999999876554  56677999999999999


Q ss_pred             EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeec-CCCEEEEcc--cceEEeeCCCCCCCCCCCC
Q 026679          159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAAS--SVLSFWIPNPSSNSTDEST  224 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~~i~iw~~~~~~~~~~~~~  224 (235)
                      ||+|+.|++++|||++..+.+.++.+|..-|+.+.|+| .|.+|++++  ++++||...+........+
T Consensus       360 lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG  428 (459)
T KOG0272|consen  360 LATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG  428 (459)
T ss_pred             EeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC
Confidence            99999999999999999999999999999999999999 789999998  8899999987665544443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-42  Score=247.13  Aligned_cols=204  Identities=21%  Similarity=0.375  Sum_probs=190.9

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      +..++..|.+|...|..++|+|+|++|+|++.|.+-++||++++..+....+|...+  ++|+|||.++++|+.|..-+|
T Consensus       250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV  329 (459)
T ss_pred             CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence            347889999999999999999999999999999999999999999888888888655  999999999999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEE
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYV  159 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l  159 (235)
                      ||++++..    ...+.+|..+|.+++|+|+|..|++|+.|+++++||++..+.+.  .+..|..-|+.+.|+| .|.+|
T Consensus       330 WDlRtgr~----im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly--~ipAH~nlVS~Vk~~p~~g~fL  403 (459)
T KOG0272|consen  330 WDLRTGRC----IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY--TIPAHSNLVSQVKYSPQEGYFL  403 (459)
T ss_pred             eecccCcE----EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce--ecccccchhhheEecccCCeEE
Confidence            99999987    88888999999999999999999999999999999999988765  4556667799999999 78999


Q ss_pred             EEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679          160 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      ++++.|+++++|..+++.++.++.+|.+.|.++.++|++.++++++  .++++|.
T Consensus       404 ~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  404 VTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999999999999999999999999998  8899995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8.7e-42  Score=260.69  Aligned_cols=205  Identities=22%  Similarity=0.388  Sum_probs=190.9

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      ..+++-||+++|..+.|+|+.++|+++|.|+++|+|.+.+..+...+++|..++  +.|+|.|-+||+++.|++-++|..
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            345588999999999999999999999999999999999999999999999887  899999999999999999999998


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                      .....    ...+.+|-+.|.|+.|+|+..++++|+.|.++++||+.+|..++.|..  |.++|.+++|||+|++|++|+
T Consensus       523 d~~~P----lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~LaSg~  596 (707)
T KOG0263|consen  523 DHNKP----LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYLASGD  596 (707)
T ss_pred             ccCCc----hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceEeecc
Confidence            87554    455668999999999999999999999999999999999999988865  667899999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          164 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       164 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      .||.|.+||+.+++.+..+.+|.+.|.++.|+.+|..|++++  +++++||+...
T Consensus       597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999999999999999999999999999999999999998  67999998643

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-40  Score=225.98  Aligned_cols=211  Identities=20%  Similarity=0.310  Sum_probs=185.6

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      .|..++.|+||+..|..+..+++|++.++++.|+++++||+.+++..+.+.+|...+  ++|+++.+.+++|+.|.++++
T Consensus        52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTikl  131 (315)
T KOG0279|consen   52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKL  131 (315)
T ss_pred             cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeee
Confidence            477899999999999999999999999999999999999999999999999998655  999999999999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccC--CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      |++.....   .......+...|.|+.|+|+  ..+++.++.|++|++||+++.+....+..  |.+.++.+++||||.+
T Consensus       132 wnt~g~ck---~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g--h~~~v~t~~vSpDGsl  206 (315)
T KOG0279|consen  132 WNTLGVCK---YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG--HSGYVNTVTVSPDGSL  206 (315)
T ss_pred             eeecccEE---EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc--ccccEEEEEECCCCCE
Confidence            99876442   12222223788999999997  67899999999999999999887776554  5566999999999999


Q ss_pred             EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCCCCC
Q 026679          159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNS  219 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~~  219 (235)
                      +++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.+. ..|+|||++++...
T Consensus       207 casGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v  267 (315)
T KOG0279|consen  207 CASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVV  267 (315)
T ss_pred             EecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhh
Confidence            9999999999999999999988776 778999999999998888887 66999999876543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.4e-38  Score=216.45  Aligned_cols=203  Identities=19%  Similarity=0.327  Sum_probs=189.9

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEEEE
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~   81 (235)
                      +..+.+.+|++.+.|+.|-+ ...|+|+|.|.+..+||+++++....+.+|...+  ++++| +++.+++|+.|+..++|
T Consensus       136 ~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklW  214 (343)
T KOG0286|consen  136 RVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW  214 (343)
T ss_pred             eeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeee
Confidence            34567899999999999987 4679999999999999999999999999998766  77889 99999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                      |++.+..    ...+.+|...|+++.|.|+|.-+++|++|++.++||+|..+.+..+.......+|++++||..|++|++
T Consensus       215 D~R~~~c----~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa  290 (343)
T KOG0286|consen  215 DVRSGQC----VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA  290 (343)
T ss_pred             eccCcce----eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe
Confidence            9998765    778889999999999999999999999999999999999999999987777788999999999999999


Q ss_pred             eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679          162 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      |..|..+.+||.-.++.+..+.+|+.+|.++..+|||..+++|+  ..++||.
T Consensus       291 gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  291 GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999999999999999999999999999  7899994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.5e-38  Score=214.28  Aligned_cols=208  Identities=17%  Similarity=0.264  Sum_probs=188.3

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEecc
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~   84 (235)
                      -+.|+||.++|.++.|++|.++++++|.||.+.|||.-+...++.++.+..-+  ++|+|.|+.+++|+-|+...||++.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            36789999999999999999999999999999999999988888888887655  8999999999999999999999998


Q ss_pred             CCCCC--CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEE
Q 026679           85 SYDKG--PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVS  161 (235)
Q Consensus        85 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  161 (235)
                      +.+..  ......+.+|.+.+.++.|-+|+ +|++++.|.+..+||+++++.+..+.  +|.+.|.++.++| +++.+++
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~--GH~gDV~slsl~p~~~ntFvS  204 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFH--GHTGDVMSLSLSPSDGNTFVS  204 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEec--CCcccEEEEecCCCCCCeEEe
Confidence            76322  23345688999999999999865 69999999999999999999888765  5667799999999 9999999


Q ss_pred             eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          162 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      |+-|+..++||++.+..++.|.+|.+.|.++.|.|+|.-+++|+  ++.++||++...
T Consensus       205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~  262 (343)
T KOG0286|consen  205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ  262 (343)
T ss_pred             cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence            99999999999999999999999999999999999999999998  889999998754

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5e-39  Score=227.99  Aligned_cols=209  Identities=24%  Similarity=0.386  Sum_probs=173.8

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceee-eeeeccCCce--EEEcC-----CCCEEEEEe
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ-GILRLRGRPT--VAFDQ-----QGLVFAVAM   73 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~~--~~~~~-----~~~~l~~~~   73 (235)
                      ++..+..++++|..-|.|++|+|||+.||+|+.||+|++||.++++++ ..+.+|...+  ++|.|     ..++|++++
T Consensus       145 ~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s  224 (480)
T KOG0271|consen  145 DTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS  224 (480)
T ss_pred             CCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc
Confidence            455677889999999999999999999999999999999999887654 4566666443  66654     456777777


Q ss_pred             cCCeEEEEeccCC-------------------------------------------------------------------
Q 026679           74 EAGAIKLFDSRSY-------------------------------------------------------------------   86 (235)
Q Consensus        74 ~dg~v~i~d~~~~-------------------------------------------------------------------   86 (235)
                      .||.++|||+..+                                                                   
T Consensus       225 kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt  304 (480)
T KOG0271|consen  225 KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT  304 (480)
T ss_pred             CCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence            7777777776530                                                                   


Q ss_pred             -------CC------------------------------------------CCceeEeecCCCcceeEEEEccCCCeEEE
Q 026679           87 -------DK------------------------------------------GPFDTFLVGGDTAEVCDIKFSNDGKSMLL  117 (235)
Q Consensus        87 -------~~------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  117 (235)
                             ..                                          .......+.+|..-|+.+.|+||++++++
T Consensus       305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS  384 (480)
T KOG0271|consen  305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS  384 (480)
T ss_pred             cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence                   00                                          00011134467888999999999999999


Q ss_pred             ecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecC
Q 026679          118 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR  197 (235)
Q Consensus       118 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  197 (235)
                      ++.|..|++||.++|+.+..+..  |-.+|..++|+.|.++|++|+.|.++++||+++.+....+.+|...|.++.|+||
T Consensus       385 aSFDkSVkLW~g~tGk~lasfRG--Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD  462 (480)
T KOG0271|consen  385 ASFDKSVKLWDGRTGKFLASFRG--HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD  462 (480)
T ss_pred             eecccceeeeeCCCcchhhhhhh--ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence            99999999999999999887765  4467999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEcc--cceEEee
Q 026679          198 RAMFVAAS--SVLSFWI  212 (235)
Q Consensus       198 ~~~l~~~~--~~i~iw~  212 (235)
                      |..+++|+  ..+++|.
T Consensus       463 G~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  463 GQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CceeecCCCceEEEeec
Confidence            99999998  5588884

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-37  Score=212.13  Aligned_cols=217  Identities=21%  Similarity=0.308  Sum_probs=188.1

Q ss_pred             hhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCc-----ceeeeeeeccCCce--EEEcCCCCEEEEEecC
Q 026679            4 NRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRV-----NACQGILRLRGRPT--VAFDQQGLVFAVAMEA   75 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~-----~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d   75 (235)
                      -.+...+++|++.|+.++..+.+ +.+++++.|.++.+|++..     |..++.+.+|...+  ++.+++|+++++++.|
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD   84 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD   84 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence            34556789999999999999874 6899999999999998753     56788888888666  9999999999999999


Q ss_pred             CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC
Q 026679           76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus        76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      +.+++||+.+++.    ...+.+|...|.+++|+||.+.+++|+.|.+|.+|+....... ......+...|.++.|+|+
T Consensus        85 ~~lrlWDl~~g~~----t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t~~~~~~~~WVscvrfsP~  159 (315)
T KOG0279|consen   85 GTLRLWDLATGES----TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-TIHEDSHREWVSCVRFSPN  159 (315)
T ss_pred             ceEEEEEecCCcE----EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-EEecCCCcCcEEEEEEcCC
Confidence            9999999999765    7778899999999999999999999999999999998655443 3333444789999999997


Q ss_pred             --CcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC-CCCCCCC
Q 026679          156 --GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN-STDESTD  225 (235)
Q Consensus       156 --~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~-~~~~~~~  225 (235)
                        ..+|++++.|+++++||+++.+....+.+|.+.++.+.++|||..+++|+  |.+.+||++.++. ..+....
T Consensus       160 ~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~  234 (315)
T KOG0279|consen  160 ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD  234 (315)
T ss_pred             CCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC
Confidence              78999999999999999999999999999999999999999999999998  7899999976543 3444333

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.9e-37  Score=207.65  Aligned_cols=217  Identities=19%  Similarity=0.281  Sum_probs=184.7

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEec
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      .++..|.+|++.|+++.|..+|+++++||.||+++|||++...+.+.++... ++.+..+|+...|++|..+|.|++||+
T Consensus        74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDL  153 (311)
T ss_pred             CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence            3678899999999999999999999999999999999999988777776553 455999999999999999999999999


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce----eeeeccCCCCCcceeeEEeCCCcEE
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK----RCGFSLEPSPNTNTEATFTPDGQYV  159 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l  159 (235)
                      .+....   ..........|.++...|||.+++++...|+.++|++-..+.    ....++..|.+.+..+.+||++++|
T Consensus       154 ~~~~c~---~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  154 GENSCT---HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             cCCccc---cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence            886441   222334457899999999999999999999999999976543    2233456677889999999999999


Q ss_pred             EEeCCCCcEEEEEcCCC-ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCCCCC
Q 026679          160 VSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDEST  224 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~~~~  224 (235)
                      ++++.|.+++||+..+. +....+++|...++..+||.||+||++++  +..++|++..++....-..
T Consensus       231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g  298 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG  298 (311)
T ss_pred             EeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence            99999999999999887 66677889999999999999999999998  6799999987765443333

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-36  Score=207.53  Aligned_cols=216  Identities=54%  Similarity=0.949  Sum_probs=197.7

Q ss_pred             CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEE
Q 026679            1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      |.+++.++.|.||...|++++.+|-+..+++++.|++|++||++..++...+.....++++|+|+|-++|++.....|++
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkL  166 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKL  166 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             EeccCCCCCCceeEeec-CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc-ceeeEEeCCCcE
Q 026679           81 FDSRSYDKGPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT-NTEATFTPDGQY  158 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~  158 (235)
                      ||++..+.+|...+.+. ......+.+.|+|||++++.++..+.+++.|.-+|.....+........ -....|+||+++
T Consensus       167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F  246 (311)
T KOG1446|consen  167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF  246 (311)
T ss_pred             EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence            99999988888888776 5567889999999999999999999999999999998888877665442 246789999999


Q ss_pred             EEEeCCCCcEEEEEcCCCceeeeecC-CCcceeEEEeecCCCEEEEcccceEEeeCCCC
Q 026679          159 VVSGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIPNPS  216 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~  216 (235)
                      +++|+.||+|.+|+++++..+..+.+ +.+++.++.|+|.-..+++++..+.+|-++..
T Consensus       247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~  305 (311)
T KOG1446|consen  247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDED  305 (311)
T ss_pred             EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecccc
Confidence            99999999999999999999999988 68899999999999999999999999987644

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.1e-36  Score=214.50  Aligned_cols=208  Identities=21%  Similarity=0.278  Sum_probs=191.4

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      ++.+.+++|.+-|.|+++.|.+++|++|+.|++++|||+.+++...++.+|-..+  +++++...++++++.|+.|+.||
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            5677899999999999999999999999999999999999999999999887666  99999999999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      ++..+.    .....+|-+.|.+++.+|.-+.|++++.|..+++||+++...+..+.  +|..+|..+.+.|-...+++|
T Consensus       222 Le~nkv----IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~--GH~~~V~~V~~~~~dpqvit~  295 (460)
T KOG0285|consen  222 LEYNKV----IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS--GHTNPVASVMCQPTDPQVITG  295 (460)
T ss_pred             chhhhh----HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec--CCCCcceeEEeecCCCceEEe
Confidence            998775    66778999999999999999999999999999999999998776554  566779999999988899999


Q ss_pred             CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCCCC
Q 026679          163 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSN  218 (235)
Q Consensus       163 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~  218 (235)
                      +.|++|++||++.++...++..|...+.+++.+|....+++++ .+++-|++..+..
T Consensus       296 S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f  352 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEF  352 (460)
T ss_pred             cCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccch
Confidence            9999999999999999999999999999999999999999999 7899999965543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-36  Score=212.83  Aligned_cols=214  Identities=17%  Similarity=0.253  Sum_probs=192.6

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCc-ceeeeeeeccCCce--EEEcCCCCEEEEEecCCeE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-NACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v   78 (235)
                      ++|++.+.++||.+.|.+++|+..|+++++++.|-.+++||.++ .++++...+|...+  +.|-|.|.++++++.|.+|
T Consensus       138 ~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ti  217 (406)
T KOG0295|consen  138 ETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTI  217 (406)
T ss_pred             cchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccce
Confidence            57899999999999999999999999999999999999999987 56777777776544  9999999999999999999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC---
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD---  155 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~---  155 (235)
                      +.|++.++..    ...+.+|...|..++.+.||..+++++.|.++++|-+.++++...+..+.|+  +.+++|.|.   
T Consensus       218 k~We~~tg~c----v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~--vEci~wap~~~~  291 (406)
T KOG0295|consen  218 KAWECDTGYC----VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP--VECIAWAPESSY  291 (406)
T ss_pred             eEEeccccee----EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc--eEEEEecccccC
Confidence            9999999876    7888899999999999999999999999999999999999887776666554  888998764   


Q ss_pred             ------------CcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCC
Q 026679          156 ------------GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       156 ------------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~  221 (235)
                                  ++++.+++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++.  +++++||++..+....
T Consensus       292 ~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~  371 (406)
T KOG0295|consen  292 PSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT  371 (406)
T ss_pred             cchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence                        35899999999999999999999999999999999999999999999997  8899999987655443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.1e-37  Score=218.44  Aligned_cols=206  Identities=19%  Similarity=0.354  Sum_probs=177.8

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc---CCceEEEcCCCCEEEEEecCCeEEEEecc
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR---GRPTVAFDQQGLVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~i~d~~   84 (235)
                      ..+++|..+|.++.|++++.++++|+.+|.|++|+..-. .++.+..+   .+..++|+|++..|++++.||+|+|||..
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~  210 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR  210 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence            456899999999999999999999999999999997544 33333333   35569999999999999999999999998


Q ss_pred             CCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           85 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                      ..+.    ...+.+|.-.|.+++|+|....+++++.|..|++||.++++++..  ++.|+..|..+.|+|++++|++++.
T Consensus       211 ~~ke----e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t--lh~HKntVl~~~f~~n~N~Llt~sk  284 (464)
T KOG0284|consen  211 MPKE----ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT--LHGHKNTVLAVKFNPNGNWLLTGSK  284 (464)
T ss_pred             CCch----hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh--hhhccceEEEEEEcCCCCeeEEccC
Confidence            8765    455689999999999999999999999999999999999998864  5667777999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCCCCCC
Q 026679          165 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSNST  220 (235)
Q Consensus       165 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~~~~~  220 (235)
                      |..+++||+++.+.+..+++|...++++.|+|-. .++.+++  +.+..|.+.......
T Consensus       285 D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~  343 (464)
T KOG0284|consen  285 DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG  343 (464)
T ss_pred             CceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence            9999999999999999999999999999999954 4555555  779999987444333

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.4e-35  Score=211.24  Aligned_cols=211  Identities=15%  Similarity=0.284  Sum_probs=187.0

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      +|.++.+|..|.++|.++.|+..|.+|++++.|+++.+||..++...+.+..+..+.  +.|-. ...|++++.|+.|++
T Consensus       265 ~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V  343 (524)
T KOG0273|consen  265 DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHV  343 (524)
T ss_pred             CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEE
Confidence            578899999999999999999999999999999999999999999999999998875  55543 456999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC----
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG----  156 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~----  156 (235)
                      +.+....+    ...+.+|..+|.++.|+|.+.+|++++.|+++++|..........+  +.|...|..+.|+|.|    
T Consensus       344 ~kv~~~~P----~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l--~~Hskei~t~~wsp~g~v~~  417 (524)
T KOG0273|consen  344 CKVGEDRP----VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL--QAHSKEIYTIKWSPTGPVTS  417 (524)
T ss_pred             EEecCCCc----ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh--hhhccceeeEeecCCCCccC
Confidence            99987654    5667789999999999999999999999999999998777666544  4555668899999875    


Q ss_pred             -----cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCC
Q 026679          157 -----QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST  220 (235)
Q Consensus       157 -----~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~  220 (235)
                           ..+++++.|+++++||+..+.+++.+..|..+|++++|+|+|+++++|+  +.+.+|+.++.++..
T Consensus       418 n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~  488 (524)
T KOG0273|consen  418 NPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK  488 (524)
T ss_pred             CCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence                 4789999999999999999999999999999999999999999999998  889999998776543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.9e-34  Score=223.03  Aligned_cols=208  Identities=24%  Similarity=0.426  Sum_probs=182.7

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEec-CcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDL-RVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      +.+.+.+|...|.+++|+|+++++++++.|++|+|||+ ..+..++++++|...+  ++|+|+++++++|+.|++|++||
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd  274 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD  274 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence            67778899999999999999999999999999999999 5558899999998655  99999999999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce--eeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      +++++.    ...+.+|...|++++|++++++|++++.|+.|++||+.++..  ...+.......+++.+.|+|++.+++
T Consensus       275 ~~~~~~----~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll  350 (456)
T KOG0266|consen  275 VRTGEC----VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL  350 (456)
T ss_pred             ccCCeE----EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE
Confidence            999665    778889999999999999999999999999999999999983  34444333322689999999999999


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecCCCcc---eeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNGNIGV---VACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +++.|+.+++||++.+..+..+.+|...   +.+...++.+.++++++  +.+++|++.+..
T Consensus       351 ~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  351 SASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG  412 (456)
T ss_pred             EecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence            9999999999999999999999988764   34445577899999998  779999998643

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.8e-35  Score=225.31  Aligned_cols=202  Identities=20%  Similarity=0.347  Sum_probs=179.0

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcce-------------------------------eeeeeeccCCce--E
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-------------------------------CQGILRLRGRPT--V   60 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-------------------------------~~~~~~~~~~~~--~   60 (235)
                      ...++|..|++++.+||.|-.|..|++|.+...+                               ....+.+|..++  .
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            4678999999999999999999999999986311                               122345666666  8


Q ss_pred             EEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc
Q 026679           61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL  140 (235)
Q Consensus        61 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  140 (235)
                      .|+|+.++|++++.|+++++|.+.+...    .....+|..+|..+.|+|.|-++++++.|++.++|......+.+.+..
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t~s~----~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag  533 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDTWSC----LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG  533 (707)
T ss_pred             eecccccceeeccCCcceeeeeccccee----EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc
Confidence            9999999999999999999999998775    677789999999999999999999999999999999988888777665


Q ss_pred             CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          141 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       141 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      +  ...+.|+.|+|+..|+++|+.|.++++||+.+|..+..+.+|.++|.+++|+|+|++|++|+  +.|++||+.++.+
T Consensus       534 h--lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~  611 (707)
T KOG0263|consen  534 H--LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSL  611 (707)
T ss_pred             c--ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcc
Confidence            4  45699999999999999999999999999999999999999999999999999999999998  8899999988655


Q ss_pred             CCC
Q 026679          219 STD  221 (235)
Q Consensus       219 ~~~  221 (235)
                      ...
T Consensus       612 v~~  614 (707)
T KOG0263|consen  612 VKQ  614 (707)
T ss_pred             hhh
Confidence            433

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.7e-36  Score=217.42  Aligned_cols=206  Identities=22%  Similarity=0.411  Sum_probs=179.3

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCC-CEEEEEecCCeEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQG-LVFAVAMEAGAIKL   80 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~-~~l~~~~~dg~v~i   80 (235)
                      +++++++|.||..+|.+++|+++|..|+++|.|+.+++||+++|++...+.....+ ++.|+|++ +.+++|+.|+.|+.
T Consensus       247 ~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~  326 (503)
T KOG0282|consen  247 DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQ  326 (503)
T ss_pred             CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEE
Confidence            47899999999999999999999999999999999999999999999999877654 59999988 89999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee-----------------------
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG-----------------------  137 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-----------------------  137 (235)
                      ||+++++.    ......|-+.|..+.|-++|+.+++.++|+.+++|+.+.+-.++.                       
T Consensus       327 wDiRs~kv----vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a  402 (503)
T KOG0282|consen  327 WDIRSGKV----VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA  402 (503)
T ss_pred             EeccchHH----HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh
Confidence            99999875    555667888999999999999999999999999999765432111                       


Q ss_pred             -----------------------eccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEe
Q 026679          138 -----------------------FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW  194 (235)
Q Consensus       138 -----------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~  194 (235)
                                             +..+.-.+....+.|||||.+|++|+.||.+.+||.++-+.+..++.|.+++..+.|
T Consensus       403 Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w  482 (503)
T KOG0282|consen  403 QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW  482 (503)
T ss_pred             hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEe
Confidence                                   111122245567899999999999999999999999999999999999999999999


Q ss_pred             ecCC-CEEEEcc--cceEEee
Q 026679          195 APRR-AMFVAAS--SVLSFWI  212 (235)
Q Consensus       195 ~~~~-~~l~~~~--~~i~iw~  212 (235)
                      +|.. ..+|+++  |.|++|+
T Consensus       483 HP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  483 HPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cCCCcceeEecccCceeEecC
Confidence            9965 5677777  9999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-33  Score=191.98  Aligned_cols=208  Identities=19%  Similarity=0.286  Sum_probs=174.4

Q ss_pred             hhhhhhhcccccceeEEEeecC-CCeeEEEeccceEEEEecCcc---eeeeeee-ccC--CceEEEcCCCCEEEEEecCC
Q 026679            4 NRILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVN---ACQGILR-LRG--RPTVAFDQQGLVFAVAMEAG   76 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~---~~~~~~~-~~~--~~~~~~~~~~~~l~~~~~dg   76 (235)
                      ...++.+++|.+.+..++|+|. |..||+|+.|+.|++|+...+   .+...+. +|.  ++.++|+|.|++|++++.|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            3456788999999999999997 789999999999999998742   3444442 233  44599999999999999999


Q ss_pred             eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCC
Q 026679           77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus        77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      ++.||.-...+.  .....+.+|...|.+++|+++|++||+++.|+.|.+|.+..+. .-..-.+..|...|..+.|+|.
T Consensus        84 t~~Iw~k~~~ef--ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   84 TVVIWKKEDGEF--ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             eEEEeecCCCce--eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence            999998775443  2366788999999999999999999999999999999987443 2222344556667999999999


Q ss_pred             CcEEEEeCCCCcEEEEEcC---CCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          156 GQYVVSGSGDGTLHAWNIN---TRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       156 ~~~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      ..+|++++.|.+|++|+-.   +..++.++.+|...|.+++|+|.|..|++++  ++++||..
T Consensus       162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence            9999999999999999876   3567899999999999999999999999998  88999984

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.2e-34  Score=202.22  Aligned_cols=204  Identities=18%  Similarity=0.310  Sum_probs=185.2

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEE
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      .++++.+.+|+..|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+|..-+  ++.+.||.++++++.|.++++|
T Consensus       183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW  262 (406)
T KOG0295|consen  183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW  262 (406)
T ss_pred             HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence            46778889999999999999999999999999999999999999999999998654  8889999999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccC----------C-----CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSND----------G-----KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT  146 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~-----~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  146 (235)
                      -+.+.+.    ...+..|..+|.+++|.|.          +     .++.+++.|++|++||+.++.++..+  .+|...
T Consensus       263 ~~~t~~~----k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL--~ghdnw  336 (406)
T KOG0295|consen  263 VVATKQC----KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL--VGHDNW  336 (406)
T ss_pred             Eeccchh----hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE--ecccce
Confidence            9998765    4556688899999999773          2     47889999999999999999877654  566688


Q ss_pred             ceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          147 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      |..++|+|.|+||+++.+|+++++||+++++++..+..|..-++++.|+.+..++++|+  ..+++|.-
T Consensus       337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999  77999963

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-33  Score=218.09  Aligned_cols=202  Identities=22%  Similarity=0.360  Sum_probs=175.5

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcce--eeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDK   88 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~   88 (235)
                      |...|.++.|+++|+.+++++.|+.+++|+....+  ....+..|...+  ++|+|+++++++++.|+++++||+.... 
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-  236 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-  236 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC-
Confidence            37899999999999999999999999999997776  566665565444  9999999999999999999999994321 


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL  168 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  168 (235)
                        .....+.+|...|++++|+|+++.+++|+.|++|++||++++++...+..+  ...|++++|++++++|++++.|+.|
T Consensus       237 --~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h--s~~is~~~f~~d~~~l~s~s~d~~i  312 (456)
T KOG0266|consen  237 --RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH--SDGISGLAFSPDGNLLVSASYDGTI  312 (456)
T ss_pred             --eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc--CCceEEEEECCCCCEEEEcCCCccE
Confidence              236677899999999999999999999999999999999999888776654  4669999999999999999999999


Q ss_pred             EEEEcCCCc--eeeeecCCCcc--eeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          169 HAWNINTRN--EVACWNGNIGV--VACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       169 ~v~d~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      ++||+.++.  ++..+..+...  ++++.|+|++.+++++.  +.+++|++......
T Consensus       313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence            999999999  56677666555  99999999999999998  68999999865433

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=190.36  Aligned_cols=208  Identities=17%  Similarity=0.241  Sum_probs=180.2

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce--eeeeeeccCCce--EEEcCCCCEEEEEecCCe
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGRPT--VAFDQQGLVFAVAMEAGA   77 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~   77 (235)
                      .+|++.++++...+.|+.+...|+++.||+++. ..||+||++++.  ++.++.++..++  +.|..+|+.+++|++||+
T Consensus        28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt  106 (311)
T KOG0315|consen   28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT  106 (311)
T ss_pred             hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence            578889999988899999999999999999886 579999998875  577788886555  889999999999999999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      ++|||++....     .....+.++|+++..+|+...|+++..+|.|++||+........+... ....+.++...|||.
T Consensus       107 ~kIWdlR~~~~-----qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe-~~~~i~sl~v~~dgs  180 (311)
T KOG0315|consen  107 VKIWDLRSLSC-----QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE-DDTSIQSLTVMPDGS  180 (311)
T ss_pred             EEEEeccCccc-----chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC-CCcceeeEEEcCCCc
Confidence            99999998553     223356699999999999999999999999999999988776655443 347799999999999


Q ss_pred             EEEEeCCCCcEEEEEcCCC------ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          158 YVVSGSGDGTLHAWNINTR------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      +|+.+...|..++|++-+.      +++..++.|.+.+..+.+|||+++|++++  .+++||+.+..
T Consensus       181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  181 MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            9999999999999998653      35667889999999999999999999998  77999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.2e-35  Score=207.69  Aligned_cols=202  Identities=22%  Similarity=0.395  Sum_probs=178.5

Q ss_pred             hhhhhcccc-cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeEEEEe
Q 026679            6 ILRYFKGHK-ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         6 ~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      .++.+++|. ..|++++|+|+...|+++|.||+|+|||....+....+.+|+  ..+++|+|...++++++.|..|++||
T Consensus       171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence            355566655 999999999999999999999999999999988888888887  55699999999999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEE
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVS  161 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  161 (235)
                      .+++.+    ...+..|...|..+.|+|++++|++++.|..+++||+++.+.+..+.  +|+..++++.|+| ...+|.+
T Consensus       251 prSg~c----l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r--~Hkkdv~~~~WhP~~~~lfts  324 (464)
T KOG0284|consen  251 PRSGSC----LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR--GHKKDVTSLTWHPLNESLFTS  324 (464)
T ss_pred             CCCcch----hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh--cchhhheeeccccccccceee
Confidence            999887    77788899999999999999999999999999999999777666555  4556699999999 5678899


Q ss_pred             eCCCCcEEEEEcCCCceeeee-cCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          162 GSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      |+.||.|..|.+...+++..+ .+|...|++++|+|-|.+|++|+  .++++|.-
T Consensus       325 gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  325 GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            999999999999856665555 57999999999999999999998  77999965

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=2.7e-32  Score=210.70  Aligned_cols=205  Identities=10%  Similarity=0.181  Sum_probs=163.7

Q ss_pred             hhcccccceeEEEeec-CCCeeEEEeccceEEEEecCcc-------eeeeeeeccCCce--EEEcCCC-CEEEEEecCCe
Q 026679            9 YFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVN-------ACQGILRLRGRPT--VAFDQQG-LVFAVAMEAGA   77 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~--~~~~~~~-~~l~~~~~dg~   77 (235)
                      .+.+|.+.|++++|+| ++++|++|+.|++|++||+.++       ..+..+..|...+  ++|+|++ .+|++++.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4789999999999999 7889999999999999999764       2455667776544  9999975 69999999999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      |++||+++++.    ...+..|...|.+++|+|++..|++++.|+.|++||+++++.+..+..+.. .....+.|.+++.
T Consensus       150 VrIWDl~tg~~----~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~-~~~~~~~w~~~~~  224 (493)
T PTZ00421        150 VNVWDVERGKA----VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS-AKSQRCLWAKRKD  224 (493)
T ss_pred             EEEEECCCCeE----EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC-CcceEEEEcCCCC
Confidence            99999987653    556678889999999999999999999999999999999988776654433 2245678899877


Q ss_pred             EEEEeC----CCCcEEEEEcCCCce-eeeecCC-CcceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679          158 YVVSGS----GDGTLHAWNINTRNE-VACWNGN-IGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN  218 (235)
Q Consensus       158 ~l~~~~----~dg~i~v~d~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~  218 (235)
                      .+++++    .|+.|++||+++... +.....+ ...+....|++++.+|++++   +.|++|++.....
T Consensus       225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence            777653    478999999987543 3333323 34566677899999888765   6799999986653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.1e-33  Score=192.77  Aligned_cols=205  Identities=16%  Similarity=0.251  Sum_probs=178.9

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC-cceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEE
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-VNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      .++..+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++. .-+....+++|...+  +.|.++++.+++++.|.+++.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            4566788999999999999999999999999999999953 334555667787766  7889999999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      |.++++.    ..+...|..-|+.+.-+.-| ..+.+++.|+++++||+|+...++.+..   +..++++.|..++..+.
T Consensus       118 D~~tG~~----~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~---kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  118 DAETGKR----IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN---KYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             eccccee----eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc---ceeEEEEEeccccccee
Confidence            9999887    77888899999988844444 4566788899999999999888866543   35589999999999999


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      +|+-|+.|++||++.......+.+|..+|+.+..+|+|.++.+-+  .++++||+...
T Consensus       191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~  248 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF  248 (338)
T ss_pred             eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence            999999999999999999999999999999999999999999998  88999998753

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.6e-33  Score=186.69  Aligned_cols=206  Identities=15%  Similarity=0.188  Sum_probs=182.5

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      ..+.+..|.++|..+.|+-+|++.++++.|++|++|+...+.+++++.+|+..+  ++.+.|+..|++|+.|..+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            456678999999999999999999999999999999999999999999999877  667789999999999999999999


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                      .+++.    ...+.+|...|+.++|+.+...+++|+.|..+++||.++........+......|.++..  .+..|++|+
T Consensus        89 ~TGkv----~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS  162 (307)
T KOG0316|consen   89 NTGKV----DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGS  162 (307)
T ss_pred             ccCee----eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeec
Confidence            99886    778899999999999999999999999999999999998765554455555566877766  567899999


Q ss_pred             CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          164 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       164 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      .||+++.||++.|+....+.+|  +|+++.|+++++.+++++  +++++.|-+++++.
T Consensus       163 ~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL  218 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL  218 (307)
T ss_pred             cCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence            9999999999999987777655  899999999999999988  88999998877654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.8e-34  Score=202.13  Aligned_cols=206  Identities=19%  Similarity=0.293  Sum_probs=178.8

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEe
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      +..+++.+.||++.|.|+.|.  .+.+++||.|.+|+|||.++++++.++-.|...++-+--+..++++++.|.++.+||
T Consensus       226 ~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWd  303 (499)
T KOG0281|consen  226 SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWD  303 (499)
T ss_pred             cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEe
Confidence            456788999999999999997  469999999999999999999999999999888866656678999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      +..... ......+.+|...|+.+.|+  .+++++++.|.+|++|++.+++.+..+.  +|...|.|+.+  .++++++|
T Consensus       304 m~sps~-it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~--gHkRGIAClQY--r~rlvVSG  376 (499)
T KOG0281|consen  304 MASPTD-ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN--GHKRGIACLQY--RDRLVVSG  376 (499)
T ss_pred             ccCchH-HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh--cccccceehhc--cCeEEEec
Confidence            987652 22345567899999999996  4599999999999999999999887654  55556877766  78999999


Q ss_pred             CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          163 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       163 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      +.|.+|++||+..|.++..+++|+.-|.++.|  |.+.+++|+  |.|+|||+......
T Consensus       377 SSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  377 SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             CCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCC
Confidence            99999999999999999999999999999999  567888887  99999999876544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.3e-31  Score=196.30  Aligned_cols=205  Identities=26%  Similarity=0.445  Sum_probs=178.9

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecCCeEEEEecc
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v~i~d~~   84 (235)
                      ++.+++|.++|++++|+|++++|++++.||.+++|++.+++....+..+...  .+.|+|+++.+++++.+|.+++||+.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            5678899999999999999999999999999999999988777777766544  48999999999999999999999998


Q ss_pred             CCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           85 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                      ..+.    ...+..|...+.++.|+|+++.+++++.++.+.+||+++++....+.  .+...+.++.|+|++.++++++.
T Consensus        82 ~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~  155 (289)
T cd00200          82 TGEC----VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR--GHTDWVNSVAFSPDGTFVASSSQ  155 (289)
T ss_pred             cccc----eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec--cCCCcEEEEEEcCcCCEEEEEcC
Confidence            7543    44555777899999999998888888889999999999887776655  45567999999999999999988


Q ss_pred             CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          165 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       165 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      ++.|++||+++++.+..+..|...+.++.|+|++..+++++  +.+++|++....
T Consensus       156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~  210 (289)
T cd00200         156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK  210 (289)
T ss_pred             CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence            99999999999998888988988999999999998887776  789999997643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.5e-32  Score=191.45  Aligned_cols=208  Identities=14%  Similarity=0.231  Sum_probs=179.5

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee--ccCCceEEEcCCCCEEEEEecCCeEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR--LRGRPTVAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~v~   79 (235)
                      .+|.....+.+|...|+++.|+.+|.+||||+.+|.|+||+..++.....+.  .....-+.|+|.+..|++|+.||.+.
T Consensus        94 ~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW  173 (399)
T KOG0296|consen   94 STGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW  173 (399)
T ss_pred             cCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence            4677788899999999999999999999999999999999999998887775  33344499999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec--------------------
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS--------------------  139 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--------------------  139 (235)
                      .|.+.+...    ...+.+|..++++=.|.|+|+.++++..||+|++|++.++++.....                    
T Consensus       174 mw~ip~~~~----~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~  249 (399)
T KOG0296|consen  174 MWQIPSQAL----CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT  249 (399)
T ss_pred             EEECCCcce----eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence            999988533    56677899999999999999999999999999999998887654432                    


Q ss_pred             -------------------------------------------------------------------------cCCCCCc
Q 026679          140 -------------------------------------------------------------------------LEPSPNT  146 (235)
Q Consensus       140 -------------------------------------------------------------------------~~~~~~~  146 (235)
                                                                                               .-.|...
T Consensus       250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~  329 (399)
T KOG0296|consen  250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG  329 (399)
T ss_pred             eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc
Confidence                                                                                     0012345


Q ss_pred             ceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          147 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      |..+.|-+ ..+|++++.+|.|+.||.++|+++.++.+|...|.+++.+|+.+++++++  ++.+|++..
T Consensus       330 V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  330 VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            66677766 57899999999999999999999999999999999999999999999998  678888753

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.8e-32  Score=207.13  Aligned_cols=207  Identities=19%  Similarity=0.333  Sum_probs=176.0

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      ..+-..++|...+++++++|||+++|||+.||.|+|||...+-+..++..|...+  +.|+..++.+++.+-||+|+.||
T Consensus       341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD  420 (893)
T KOG0291|consen  341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD  420 (893)
T ss_pred             ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence            3455668999999999999999999999999999999999999999999887655  89999999999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC-cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                      +.....   ........+.+..|++..|.|..+++|+.|. .|.+|++.+|+.+-.+.  +|.++|.+++|+|.+..|++
T Consensus       421 lkRYrN---fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs--GHEgPVs~l~f~~~~~~LaS  495 (893)
T KOG0291|consen  421 LKRYRN---FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS--GHEGPVSGLSFSPDGSLLAS  495 (893)
T ss_pred             ecccce---eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc--CCCCcceeeEEccccCeEEe
Confidence            987654   1222233445677899999999888888876 59999999999987655  56688999999999999999


Q ss_pred             eCCCCcEEEEEcCCC-ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          162 GSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      ++.|.+|++||+-.. ..+.++. +...+..++|+|+|+-|+++.  |.|.+||.+...
T Consensus       496 ~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~  553 (893)
T KOG0291|consen  496 GSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV  553 (893)
T ss_pred             ccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence            999999999998654 3344454 667899999999999999987  899999997543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-32  Score=197.22  Aligned_cols=208  Identities=20%  Similarity=0.335  Sum_probs=165.3

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce---eeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA---CQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~   79 (235)
                      +..+.+..|++.|+-+.||++|++||+++.|.+..+|++....   ..+++.+|..++  +.|+||.+++++|+.+..+.
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS  294 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence            3456788999999999999999999999999999999886543   466777777666  99999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce----------------------eee
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK----------------------RCG  137 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----------------------~~~  137 (235)
                      +||+.+++...   ....++...+.+++|.|||..+++|+.|+.+..||+.....                      +..
T Consensus       295 lwDv~tgd~~~---~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~  371 (519)
T KOG0293|consen  295 LWDVDTGDLRH---LYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLL  371 (519)
T ss_pred             eccCCcchhhh---hcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEE
Confidence            99999987511   11123457899999999999999999999999999743210                      000


Q ss_pred             ---------ec--------cCCCCCcceeeEEeCCC--------------------------------------------
Q 026679          138 ---------FS--------LEPSPNTNTEATFTPDG--------------------------------------------  156 (235)
Q Consensus       138 ---------~~--------~~~~~~~i~~~~~~~~~--------------------------------------------  156 (235)
                               +.        ......+|++++.|.++                                            
T Consensus       372 v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~  451 (519)
T KOG0293|consen  372 VTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN  451 (519)
T ss_pred             EecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC
Confidence                     00        00111345555555554                                            


Q ss_pred             -cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCC
Q 026679          157 -QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       157 -~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~  215 (235)
                       .++++|++|+.|+||+..+++++.++.+|...|.+++|+|.. .++|+++  |+|+||.+..
T Consensus       452 ~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  452 DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence             378999999999999999999999999999999999999955 5677777  8899998753

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.9e-33  Score=204.71  Aligned_cols=210  Identities=18%  Similarity=0.327  Sum_probs=177.4

Q ss_pred             hhhhhhcccccceeEEEeec-CCCeeEEEeccceEEEEecCc-ceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679            5 RILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRV-NACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      +.+..+.||+..|+++.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..++  ++|+++|..|++++.|+.+++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            56778999999999999999 788999999999999999976 88999999998776  999999999999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV  159 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  159 (235)
                      ||+++++.    ...+ .....++++.|+|++ +.+++|+.|+.|+.||+++++.++.+.  .|-+.|..+.|-++|+.+
T Consensus       285 wDtETG~~----~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--~hLg~i~~i~F~~~g~rF  357 (503)
T KOG0282|consen  285 WDTETGQV----LSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--RHLGAILDITFVDEGRRF  357 (503)
T ss_pred             eccccceE----EEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--hhhhheeeeEEccCCceE
Confidence            99999875    2222 234678999999988 889999999999999999999887665  455779999999999999


Q ss_pred             EEeCCCCcEEEEEcCCCcee----------------------------------------------eeecCCC--cceeE
Q 026679          160 VSGSGDGTLHAWNINTRNEV----------------------------------------------ACWNGNI--GVVAC  191 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~~~~----------------------------------------------~~~~~~~--~~v~~  191 (235)
                      ++.++|+.++||+.+.+-.+                                              ..+++|.  +.-..
T Consensus       358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~  437 (503)
T KOG0282|consen  358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ  437 (503)
T ss_pred             eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence            99999999999998754211                                              1123442  34567


Q ss_pred             EEeecCCCEEEEcc--cceEEeeCCCCCCCCC
Q 026679          192 LKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       192 ~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~  221 (235)
                      +.|||||.+|++|+  |.+.+||.++.++...
T Consensus       438 v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~  469 (503)
T KOG0282|consen  438 VDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK  469 (503)
T ss_pred             EEEcCCCCeEEeecCCccEEEeechhhhhhhc
Confidence            89999999999998  8899999987655433

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.9e-32  Score=193.28  Aligned_cols=213  Identities=15%  Similarity=0.250  Sum_probs=191.0

Q ss_pred             CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecCCeE
Q 026679            1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus         1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v   78 (235)
                      |++|++..++.||-..|..+++|+-..++++++.|+.|+.||++.++.++.+.+|-..  +++.+|.-..|++|+.|..+
T Consensus       180 latg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~  259 (460)
T KOG0285|consen  180 LATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTI  259 (460)
T ss_pred             cccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceE
Confidence            5688999999999999999999999999999999999999999999999999887644  48899999999999999999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      ++||+++...    ...+.+|..+|..+.+.|-...+++++.|++|++||++.++....+..  |...+++++.+|....
T Consensus       260 RvWDiRtr~~----V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~--hkksvral~lhP~e~~  333 (460)
T KOG0285|consen  260 RVWDIRTRAS----VHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH--HKKSVRALCLHPKENL  333 (460)
T ss_pred             EEeeecccce----EEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec--ccceeeEEecCCchhh
Confidence            9999998775    788899999999999999777899999999999999999988766554  4566999999999999


Q ss_pred             EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCCCCCC
Q 026679          159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNST  220 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~~~  220 (235)
                      +|+++.| .|+-|++..+..+..+.+|...|.+++.+.|+-++..+. |.+..||.+.+...+
T Consensus       334 fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ  395 (460)
T KOG0285|consen  334 FASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQ  395 (460)
T ss_pred             hhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccc
Confidence            9999988 489999999999999999999999999999887766666 889999998765443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-31  Score=204.02  Aligned_cols=206  Identities=16%  Similarity=0.321  Sum_probs=182.3

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEecc-ceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeEEEEe
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLD-HSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      +++.+.--..+|..++|+..|.+||.|+.. |.+-||+......+-..++|.  ..+++++|||.++++|+.||.|++||
T Consensus       299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn  378 (893)
T KOG0291|consen  299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN  378 (893)
T ss_pred             EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence            445555556789999999999999988764 789999999888877777665  44599999999999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      ...+-+    ...+..|.+.|+.+.|+..|+.+++.+-||+|+.||+...+..+.+..+. +....+++..|.|..+++|
T Consensus       379 ~~SgfC----~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~-p~QfscvavD~sGelV~AG  453 (893)
T KOG0291|consen  379 TQSGFC----FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE-PIQFSCVAVDPSGELVCAG  453 (893)
T ss_pred             ccCceE----EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC-ceeeeEEEEcCCCCEEEee
Confidence            988765    78888999999999999999999999999999999999999888887654 3556789999999999999


Q ss_pred             CCCC-cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          163 SGDG-TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       163 ~~dg-~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      +.|. .|.+|++++|+.+..+.+|++||.+++|+|++..|++++  .+|++|++-..
T Consensus       454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence            9886 499999999999999999999999999999999999999  88999998443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.1e-32  Score=201.98  Aligned_cols=213  Identities=15%  Similarity=0.222  Sum_probs=189.5

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecCCeEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~v~   79 (235)
                      ++..+++.++--.-||.+..|-+..+++++|+.|..|+||+..+++.++.+..|..  .+++.+|...++++++.|-.|+
T Consensus        43 etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iK  122 (794)
T KOG0276|consen   43 ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIK  122 (794)
T ss_pred             ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEE
Confidence            34567778888888999999999999999999999999999999999999999985  5599999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC--CC
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP--DG  156 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~~  156 (235)
                      +||.+..   ......+.+|...|.+++|+| |.+.+++++-|++|++|.+.+..+..+  +.+|...|+++.+-+  |.
T Consensus       123 lW~we~~---wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT--l~gHekGVN~Vdyy~~gdk  197 (794)
T KOG0276|consen  123 LWDWENE---WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT--LEGHEKGVNCVDYYTGGDK  197 (794)
T ss_pred             EeeccCc---eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee--eeccccCcceEEeccCCCc
Confidence            9998763   234677889999999999999 678899999999999999977766554  456667799999987  44


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      .+|++|+.|..|+|||.++..++.++.+|...|..+.|+|.-..+++|+  |+++||+-.+-++.
T Consensus       198 pylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE  262 (794)
T KOG0276|consen  198 PYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE  262 (794)
T ss_pred             ceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh
Confidence            7999999999999999999999999999999999999999999999999  89999998765443

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.5e-30  Score=202.36  Aligned_cols=205  Identities=14%  Similarity=0.270  Sum_probs=154.6

Q ss_pred             hhhhhcccccceeEEEeecC-CCeeEEEeccceEEEEecCcce--------eeeeeeccCCc--eEEEcCCCCE-EEEEe
Q 026679            6 ILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNA--------CQGILRLRGRP--TVAFDQQGLV-FAVAM   73 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~--------~~~~~~~~~~~--~~~~~~~~~~-l~~~~   73 (235)
                      .+..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+.++.        ....+..|...  .++|+|++.. +++++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            45668899999999999996 7899999999999999997642        23345556544  4999998875 57889


Q ss_pred             cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce-----
Q 026679           74 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT-----  148 (235)
Q Consensus        74 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~-----  148 (235)
                      .|+.|++||+++++.    ...+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+..+..|.  +.+.     
T Consensus       146 ~DgtIrIWDl~tg~~----~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~--g~~~s~~v~  218 (568)
T PTZ00420        146 FDSFVNIWDIENEKR----AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD--GGKNTKNIW  218 (568)
T ss_pred             CCCeEEEEECCCCcE----EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc--CCceeEEEE
Confidence            999999999988653    23332 45789999999999999999999999999999998887665543  3232     


Q ss_pred             eeEEeCCCcEEEEeCCCC----cEEEEEcCC-CceeeeecC--CCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          149 EATFTPDGQYVVSGSGDG----TLHAWNINT-RNEVACWNG--NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       149 ~~~~~~~~~~l~~~~~dg----~i~v~d~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      ...|++++.+|++++.|+    .|++||+++ .+++..+..  +.+.+......+++.++++|+  ++|++|++..+.
T Consensus       219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence            223568889999877664    799999985 555555432  223333333345688888885  779999997654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.2e-31  Score=193.37  Aligned_cols=217  Identities=18%  Similarity=0.344  Sum_probs=173.6

Q ss_pred             hhhhhhhhc---ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec-------------------------
Q 026679            3 DNRILRYFK---GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-------------------------   54 (235)
Q Consensus         3 ~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-------------------------   54 (235)
                      +|+.+..|.   +|.+.|.+++|+||++.++|++.|.+++|||+.+.++++++..                         
T Consensus       221 tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G  300 (603)
T KOG0318|consen  221 TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSG  300 (603)
T ss_pred             CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCc
Confidence            566777777   8999999999999999999999999999999887655544422                         


Q ss_pred             ------------------cC--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce----------------------
Q 026679           55 ------------------RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD----------------------   92 (235)
Q Consensus        55 ------------------~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~----------------------   92 (235)
                                        |.  +.++..+|++++|++|+.||.|.-|+...+...++.                      
T Consensus       301 ~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~  380 (603)
T KOG0318|consen  301 TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI  380 (603)
T ss_pred             EEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence                              22  234888999999999999999999998753321110                      


Q ss_pred             -------eE-------------e---------------------------ec--------CCCcceeEEEEccCCCeEEE
Q 026679           93 -------TF-------------L---------------------------VG--------GDTAEVCDIKFSNDGKSMLL  117 (235)
Q Consensus        93 -------~~-------------~---------------------------~~--------~~~~~v~~~~~~~~~~~l~~  117 (235)
                             ..             .                           +.        .-.....+++++|++..++.
T Consensus       381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV  460 (603)
T KOG0318|consen  381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV  460 (603)
T ss_pred             ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE
Confidence                   00             0                           00        00123457889999999999


Q ss_pred             ecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCcee-eeecCCCcceeEEEeec
Q 026679          118 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV-ACWNGNIGVVACLKWAP  196 (235)
Q Consensus       118 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~  196 (235)
                      |+.|+.|++|.+.............|.++|++++||||+.+|++|...+.+.+||+.+.+.. ..+.-|...|.+++|+|
T Consensus       461 GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP  540 (603)
T KOG0318|consen  461 GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP  540 (603)
T ss_pred             ecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC
Confidence            99999999999988776666566778899999999999999999999999999999887663 33445999999999999


Q ss_pred             CCCEEEEcc--cceEEeeCCCCCCC
Q 026679          197 RRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       197 ~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      +..++++|+  .++.||+++.....
T Consensus       541 ~n~~vATGSlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  541 NNKLVATGSLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             CceEEEeccccceEEEEEccChhhh
Confidence            999999999  67999999755433

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-31  Score=178.79  Aligned_cols=213  Identities=15%  Similarity=0.286  Sum_probs=178.0

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEEec-----CC
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAME-----AG   76 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~-----dg   76 (235)
                      +|+.+.+++||++.|+|+..+.+.+++++|+.|.++++||+++|+++..++.... ..+.|+++|++++.+..     .+
T Consensus        41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~  120 (327)
T KOG0643|consen   41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTC  120 (327)
T ss_pred             CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcce
Confidence            6788899999999999999999999999999999999999999999999987763 44999999998888764     47


Q ss_pred             eEEEEeccCCCC---CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679           77 AIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT  153 (235)
Q Consensus        77 ~v~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~  153 (235)
                      .|.++|++....   ..........+.+.++.+-|.|-++.|++|..||.|..||+++++.... ....|...|+.++++
T Consensus       121 ~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~-s~~~h~~~Ind~q~s  199 (327)
T KOG0643|consen  121 FVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVD-SDEEHSSKINDLQFS  199 (327)
T ss_pred             EEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeee-chhhhcccccccccc
Confidence            899999985431   1112455666778999999999999999999999999999999865432 223455679999999


Q ss_pred             CCCcEEEEeCCCCcEEEEEcCCCce-------------------------------------------------------
Q 026679          154 PDGQYVVSGSGDGTLHAWNINTRNE-------------------------------------------------------  178 (235)
Q Consensus       154 ~~~~~l~~~~~dg~i~v~d~~~~~~-------------------------------------------------------  178 (235)
                      |+..++++++.|.+-++||.++.+.                                                       
T Consensus       200 ~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE  279 (327)
T KOG0643|consen  200 RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE  279 (327)
T ss_pred             CCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHH
Confidence            9999999999999999999876432                                                       


Q ss_pred             eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          179 VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       179 ~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      +..+++|-++|.+++|+|+|+..++|+  |.+++..++..
T Consensus       280 igrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  280 IGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             hccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence            223467889999999999999999998  77999877643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.4e-32  Score=206.65  Aligned_cols=205  Identities=20%  Similarity=0.279  Sum_probs=178.5

Q ss_pred             hhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCccee---eeee--------eccCCceEEEcCCCCEEEEE
Q 026679            5 RILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC---QGIL--------RLRGRPTVAFDQQGLVFAVA   72 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~---~~~~--------~~~~~~~~~~~~~~~~l~~~   72 (235)
                      -+++...+|++.|.+++++..+ .+|+++|.|+++++|++...+.   ...+        ....+++++++|+.+++++|
T Consensus       402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~  481 (775)
T KOG0319|consen  402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG  481 (775)
T ss_pred             hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec
Confidence            3566778999999999998765 6899999999999999976211   1111        22346779999999999999


Q ss_pred             ecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEE
Q 026679           73 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF  152 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~  152 (235)
                      +.|.+.++|+++....    ...+.+|...|.++.|+|..+.+++++.|++|++|.+.+..+++.+..  |...|..+.|
T Consensus       482 SqDktaKiW~le~~~l----~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG--H~~aVlra~F  555 (775)
T KOG0319|consen  482 SQDKTAKIWDLEQLRL----LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG--HTSAVLRASF  555 (775)
T ss_pred             ccccceeeecccCceE----EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC--ccceeEeeee
Confidence            9999999999995443    678889999999999999999999999999999999999999987764  5577999999


Q ss_pred             eCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      -.+|+.|++++.||.|++|++++++++.++..|...|++++.+|...++++|+  +.+.+|.=.+
T Consensus       556 ~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  556 IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            99999999999999999999999999999999999999999999999999887  6688886444

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.3e-32  Score=182.20  Aligned_cols=204  Identities=21%  Similarity=0.316  Sum_probs=175.2

Q ss_pred             hhhhhhcccccceeEEEeecC-CCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEEE
Q 026679            5 RILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKL   80 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i   80 (235)
                      .+++.++.|...|.++.|++. +..++++|.|++|++|+...++.+.++.+|...+  .+|+| .++++++++.|+.+++
T Consensus        95 ~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l  174 (311)
T KOG0277|consen   95 KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL  174 (311)
T ss_pred             cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence            578899999999999999985 4678888999999999999999999999988666  88999 6789999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC-CcE
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD-GQY  158 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  158 (235)
                      ||++...+    ......|...+.++.|+. +.+.+++++.|+.|+.||++.-+. ..+.+.+|.-.|+.+.|||. ...
T Consensus       175 wdvr~~gk----~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-pl~eL~gh~~AVRkvk~Sph~~~l  249 (311)
T KOG0277|consen  175 WDVRSPGK----FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-PLFELNGHGLAVRKVKFSPHHASL  249 (311)
T ss_pred             EEecCCCc----eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-cceeecCCceEEEEEecCcchhhH
Confidence            99987654    444778889999999998 667889999999999999998653 34566778888999999995 568


Q ss_pred             EEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeec-CCCEEEEcc--cceEEeeC
Q 026679          159 VVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAP-RRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~~i~iw~~  213 (235)
                      |++++.|-++++||... ...+.+...|..-+..+.|++ +..++++++  +.++||+.
T Consensus       250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            89999999999999874 445666778899999999998 567888887  88999985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.4e-30  Score=188.90  Aligned_cols=204  Identities=29%  Similarity=0.513  Sum_probs=176.2

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecCCeEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      +++.+..+..|...|.++.|+++++++++++.|+.+++||+.+++....+..+..  ..++++|++.++++++.++.+++
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence            3456677888999999999999988888888899999999998888888876653  44999999998888888999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      ||++..+.    ......|...+.++.|+|+++.+++++.++.|++||++.++....+.  .+...+.++.|+|++.+++
T Consensus       162 ~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~  235 (289)
T cd00200         162 WDLRTGKC----VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR--GHENGVNSVAFSPDGYLLA  235 (289)
T ss_pred             EEcccccc----ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh--hcCCceEEEEEcCCCcEEE
Confidence            99986554    33444677799999999999999999999999999999887776554  3445799999999999999


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      +++.+|.|++||+.+++....+..|...|.+++|+|++.++++++  +.+++|+
T Consensus       236 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            998899999999999999888988999999999999999999987  7799996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.6e-30  Score=175.43  Aligned_cols=202  Identities=22%  Similarity=0.328  Sum_probs=165.3

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcc--eeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCC
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYD   87 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~   87 (235)
                      +|+..|.+++|+|.|++|+++|.|.++.||.-..+  +++..+.+|...+  ++|+++|++||+++.|+.|-+|.+....
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd  138 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD  138 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence            69999999999999999999999999999986543  6888899988654  9999999999999999999999998544


Q ss_pred             CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC-CCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG  166 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  166 (235)
                      . -.....+.+|...|..+.|+|....|++++.|.+|++|+-. ...-.....+..|...+.+++|+|.|..|++++.|+
T Consensus       139 E-fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~  217 (312)
T KOG0645|consen  139 E-FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG  217 (312)
T ss_pred             c-EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence            2 22345678899999999999999999999999999999877 444444456667777899999999999999999999


Q ss_pred             cEEEEEcCCC-------ce------------------ee------------------eecCCCcceeEEEeecC-CCEEE
Q 026679          167 TLHAWNINTR-------NE------------------VA------------------CWNGNIGVVACLKWAPR-RAMFV  202 (235)
Q Consensus       167 ~i~v~d~~~~-------~~------------------~~------------------~~~~~~~~v~~~~~~~~-~~~l~  202 (235)
                      +++||...+.       +.                  +.                  .-..|...|++++|.|. ...|+
T Consensus       218 tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~  297 (312)
T KOG0645|consen  218 TVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLA  297 (312)
T ss_pred             ceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCcee
Confidence            9999984321       00                  00                  01246678999999994 56777


Q ss_pred             Ecc--cceEEeeCC
Q 026679          203 AAS--SVLSFWIPN  214 (235)
Q Consensus       203 ~~~--~~i~iw~~~  214 (235)
                      +++  |.+++|.+.
T Consensus       298 s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  298 SGGDDGIVNFWELE  311 (312)
T ss_pred             ecCCCceEEEEEec
Confidence            776  889999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=4e-30  Score=212.03  Aligned_cols=206  Identities=17%  Similarity=0.282  Sum_probs=168.4

Q ss_pred             chhhhhhhhcccccceeEEEeec-CCCeeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEc-CCCCEEEEEecCCeE
Q 026679            2 YDNRILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFD-QQGLVFAVAMEAGAI   78 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~dg~v   78 (235)
                      .+++.+..+++|.+.|++++|+| ++.+|++|+.|++|++||++++..+..+..+.. .++.|+ +++..|++|+.||.|
T Consensus       563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I  642 (793)
T PLN00181        563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKV  642 (793)
T ss_pred             CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeE
Confidence            45667788899999999999997 678999999999999999999888877765532 347774 579999999999999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC------ceeeeeccCCCCCcceeeEE
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG------EKRCGFSLEPSPNTNTEATF  152 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~~~~~~~i~~~~~  152 (235)
                      ++||+++...   ......+|...|.++.|. ++.+|++++.|+.|++||++.+      +.+..  +..|...+..++|
T Consensus       643 ~iwD~~~~~~---~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~--~~gh~~~i~~v~~  716 (793)
T PLN00181        643 YYYDLRNPKL---PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS--FMGHTNVKNFVGL  716 (793)
T ss_pred             EEEECCCCCc---cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE--EcCCCCCeeEEEE
Confidence            9999987542   234556889999999997 6788999999999999999753      33333  3455667889999


Q ss_pred             eCCCcEEEEeCCCCcEEEEEcCCCceeeee-------------cCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          153 TPDGQYVVSGSGDGTLHAWNINTRNEVACW-------------NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      +|++++|++|+.|+.|++|+......+..+             ..+...|.+++|+|++..|++++  |.|+||++
T Consensus       717 s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        717 SVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999999999999998655433221             23456799999999999999998  88999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=7.3e-31  Score=204.09  Aligned_cols=210  Identities=19%  Similarity=0.314  Sum_probs=185.9

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEE
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      +.++..|..|.++|..++|+|.+.++++|+.|..|+||+.++.+++.++.+|-..+  +.|++.-.++++++.|.+|+||
T Consensus        41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIW  120 (1202)
T KOG0292|consen   41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIW  120 (1202)
T ss_pred             hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEE
Confidence            56788999999999999999999999999999999999999999999999987544  9999999999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC---------------------------ce
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG---------------------------EK  134 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---------------------------~~  134 (235)
                      +..+.+.    ...+.+|...|.|.+|+|....+++++-|.+|++||+..-                           ..
T Consensus       121 Nwqsr~~----iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~Da  196 (1202)
T KOG0292|consen  121 NWQSRKC----IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDA  196 (1202)
T ss_pred             eccCCce----EEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCe
Confidence            9998876    7788899999999999999999999999999999998531                           11


Q ss_pred             eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc--eeeeecCCCcceeEEEeecCCCEEEEcc--cceEE
Q 026679          135 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN--EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSF  210 (235)
Q Consensus       135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~i  210 (235)
                      +..+.+.+|...|+-++|+|.-.++++|+.|..|++|.+..-+  .+.+..+|-+.|.++-|+|...++++.+  +.++|
T Consensus       197 VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV  276 (1202)
T KOG0292|consen  197 VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV  276 (1202)
T ss_pred             eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence            2234456777889999999999999999999999999986543  2566789999999999999999999998  78999


Q ss_pred             eeCCCCC
Q 026679          211 WIPNPSS  217 (235)
Q Consensus       211 w~~~~~~  217 (235)
                      ||++..+
T Consensus       277 wDm~kRt  283 (1202)
T KOG0292|consen  277 WDMTKRT  283 (1202)
T ss_pred             Eeccccc
Confidence            9997543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.3e-30  Score=195.82  Aligned_cols=212  Identities=16%  Similarity=0.246  Sum_probs=188.4

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      +..+.+..|+..|.++.|+|...+++++-..|.|.|||.++...++.+.....++  ..|-+.-+.+++|+.|..|++|+
T Consensus         4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence            4567788899999999999999999999999999999999999999999887766  88889999999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC-ceeeeeccCCCCCcceeeEEeC-CCcEEE
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTP-DGQYVV  160 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~  160 (235)
                      ..+.+.    ...+..|...+++++.+|.-.+++++++|-.|++||.... .+.+.+  .+|...|.+++|.| |.+.++
T Consensus        84 ynt~ek----V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf--eGH~HyVMqv~fnPkD~ntFa  157 (794)
T KOG0276|consen   84 YNTGEK----VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF--EGHEHYVMQVAFNPKDPNTFA  157 (794)
T ss_pred             ccccee----eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE--cCcceEEEEEEecCCCcccee
Confidence            999887    7788899999999999999999999999999999998654 334444  45556699999999 788999


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeec--CCCEEEEcc--cceEEeeCCCCCCCCCC
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP--RRAMFVAAS--SVLSFWIPNPSSNSTDE  222 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~--~~i~iw~~~~~~~~~~~  222 (235)
                      +++.|++|+||.+.+..+..++++|...|.++.+.+  |..+|++|+  ..++|||+.+....+..
T Consensus       158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL  223 (794)
T KOG0276|consen  158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL  223 (794)
T ss_pred             eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh
Confidence            999999999999999999999999999999999988  457999998  66999999886544433

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.98  E-value=4.3e-32  Score=183.12  Aligned_cols=215  Identities=18%  Similarity=0.376  Sum_probs=184.8

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      ++|.-+.+|.||.+.|++...+.+....|+++.|=+-++||.-+|..+..+.... +..++|+.|.+.|++|+.+..+++
T Consensus        47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrv  126 (334)
T KOG0278|consen   47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRV  126 (334)
T ss_pred             CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhh
Confidence            4567788999999999999999888889999999999999999999888887554 445999999999999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCC-----------------
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS-----------------  143 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----------------  143 (235)
                      ||++..+.+   .....+|.+.|..+.|....+.+++++.|++|++||.+++..++.+..+.+                 
T Consensus       127 fdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~  203 (334)
T KOG0278|consen  127 FDLNRPKAP---PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY  203 (334)
T ss_pred             hhccCCCCC---chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec
Confidence            999987653   345668999999999999888899999999999999999988776654322                 


Q ss_pred             --------------------CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee-cCCCcceeEEEeecCCCEEE
Q 026679          144 --------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFV  202 (235)
Q Consensus       144 --------------------~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~  202 (235)
                                          +..|.+..++|+...+++|++|..++.||..+++.+..+ ++|.++|.|+.|+|+|...+
T Consensus       204 gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA  283 (334)
T KOG0278|consen  204 GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYA  283 (334)
T ss_pred             CceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceee
Confidence                                134555666777778899999999999999999998886 89999999999999999999


Q ss_pred             Ecc--cceEEeeCCCCCCC
Q 026679          203 AAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       203 ~~~--~~i~iw~~~~~~~~  219 (235)
                      +|+  |+|++|.....+..
T Consensus       284 sGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  284 SGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ccCCCceEEEEEecCCCch
Confidence            999  99999998765544

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=1.4e-30  Score=198.56  Aligned_cols=210  Identities=19%  Similarity=0.267  Sum_probs=176.1

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce----eeeeeeccCCce--EEEcCC-CCEEEEEecCCeEEEE
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA----CQGILRLRGRPT--VAFDQQ-GLVFAVAMEAGAIKLF   81 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~~--~~~~~~-~~~l~~~~~dg~v~i~   81 (235)
                      .+.||++.|.++....+|.+|+|||.|.++++|.++++.    ++....+|...+  ++++.. ...|++++.|+++++|
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W  439 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW  439 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence            578999999999966677899999999999999885443    344455666544  777654 3689999999999999


Q ss_pred             eccCCCCCCc-eeE----eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC
Q 026679           82 DSRSYDKGPF-DTF----LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG  156 (235)
Q Consensus        82 d~~~~~~~~~-~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  156 (235)
                      ++...+.... ..+    ....|...|++++++|+.+.+++|+.|++.++|++...+....+.  +|...+.++.|+|..
T Consensus       440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs--GH~RGvw~V~Fs~~d  517 (775)
T KOG0319|consen  440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS--GHTRGVWCVSFSKND  517 (775)
T ss_pred             cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee--CCccceEEEEecccc
Confidence            9987332111 122    345789999999999999999999999999999999777766555  555679999999999


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCC
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST  220 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~  220 (235)
                      +.+++++.|++|+||.+.+..++.++.+|...|..+.|..++..|++++  |-+++|++++.....
T Consensus       518 q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~  583 (775)
T KOG0319|consen  518 QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM  583 (775)
T ss_pred             ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh
Confidence            9999999999999999999999999999999999999999999999998  889999998875443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=5.2e-30  Score=184.92  Aligned_cols=207  Identities=18%  Similarity=0.293  Sum_probs=180.7

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~   79 (235)
                      ..++.+..|+||...|+.+.++|+...+++++.|..|+||.............|..++  +..+|.|++|++++.|+...
T Consensus       249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~  328 (506)
T KOG0289|consen  249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA  328 (506)
T ss_pred             chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEE
Confidence            3578899999999999999999999999999999999999998887777777787666  88899999999999999999


Q ss_pred             EEeccCCCCCCceeEeec--CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679           80 LFDSRSYDKGPFDTFLVG--GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      +.|++++..    .....  ...-.+++.+|+|||..|.+|..|+.|++||+.++.....|.  +|.++|..++|+.+|-
T Consensus       329 Fsd~~~g~~----lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp--ght~~vk~i~FsENGY  402 (506)
T KOG0289|consen  329 FSDISSGSQ----LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP--GHTGPVKAISFSENGY  402 (506)
T ss_pred             EEEccCCcE----EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC--CCCCceeEEEeccCce
Confidence            999998764    22222  223458999999999999999999999999999988776554  5778899999999999


Q ss_pred             EEEEeCCCCcEEEEEcCCCceeeeecCCC-cceeEEEeecCCCEEEEcccceEEeeCC
Q 026679          158 YVVSGSGDGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAMFVAASSVLSFWIPN  214 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~i~iw~~~  214 (235)
                      ||+++++|+.|++||+|..+...++.... .++.++.|.+.|.+|+.++.+++||.+.
T Consensus       403 ~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  403 WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            99999999999999999988877776432 3799999999999999999999998876

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=9.4e-31  Score=181.85  Aligned_cols=208  Identities=19%  Similarity=0.267  Sum_probs=172.7

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCc------------c------eeeeeeeccC--CceEEEcCCCCE
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV------------N------ACQGILRLRG--RPTVAFDQQGLV   68 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~------------~------~~~~~~~~~~--~~~~~~~~~~~~   68 (235)
                      .+..|.+++.+.+|+|||.++|+|+.|..|+|.|++.            +      ..++++-.|.  ++.+.|+|....
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence            3567999999999999999999999999999999861            1      1223333333  445999999999


Q ss_pred             EEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec-cCCCCCcc
Q 026679           69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTN  147 (235)
Q Consensus        69 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~i  147 (235)
                      |++++.|++|++||+......  ..++......+|.++.|+|.|++|++|..-..+++||+.+-++...-. -..|.+.|
T Consensus       187 LiS~srD~tvKlFDfsK~saK--rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAK--RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             EEeccCCCeEEEEecccHHHH--HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            999999999999999764431  133444556789999999999999999999999999999988764433 34577899


Q ss_pred             eeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-CCC-cceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          148 TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNI-GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       148 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      +++.+++.|++.++++.||.|++||--+++++.++. .|. ..|.+..|..+++|+++++  +.+++|.+.++..
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence            999999999999999999999999999999998884 454 4899999999999999998  6799999977643

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=1.8e-30  Score=179.22  Aligned_cols=207  Identities=21%  Similarity=0.302  Sum_probs=179.9

Q ss_pred             CchhhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeE
Q 026679            1 MYDNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus         1 l~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v   78 (235)
                      +++|+.++.+++|.+-|+++.-+.-| .++.+++.|+++++||+++...++++.... ...+.|..++..+.+|+-|+.|
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i  198 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI  198 (338)
T ss_pred             cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCce
Confidence            47899999999999999999865555 567899999999999999998888886544 4558999999999999999999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC----ceeeeeccCCCC--CcceeeEE
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG----EKRCGFSLEPSP--NTNTEATF  152 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~--~~i~~~~~  152 (235)
                      ++||++..+.    ...+.+|..+|+.+..+|+|.++++-+.|.++++||++..    .++..+..+.|.  .....++|
T Consensus       199 kvWd~r~~d~----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw  274 (338)
T KOG0265|consen  199 KVWDLRKNDG----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW  274 (338)
T ss_pred             eeeccccCcc----eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence            9999998876    8889999999999999999999999999999999999753    345666655554  23456799


Q ss_pred             eCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcccceEEe
Q 026679          153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW  211 (235)
Q Consensus       153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw  211 (235)
                      +|+++++.+|+.|..+++||......+..+.+|.+.|.+++|+|...+|.+++.+-+||
T Consensus       275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~  333 (338)
T KOG0265|consen  275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIY  333 (338)
T ss_pred             cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeE
Confidence            99999999999999999999998899999999999999999999999999998554443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.5e-30  Score=197.73  Aligned_cols=207  Identities=20%  Similarity=0.388  Sum_probs=182.0

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCc-----ceeee--------eeeccC-CceEEEcCCCCE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-----NACQG--------ILRLRG-RPTVAFDQQGLV   68 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-----~~~~~--------~~~~~~-~~~~~~~~~~~~   68 (235)
                      ...++.++++|.+.|++++.+||+..+++||.|.+|++||..-     +...+        +++... +-++.++||+++
T Consensus       443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence            4567788899999999999999999999999999999999742     22212        222222 345899999999


Q ss_pred             EEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679           69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT  148 (235)
Q Consensus        69 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~  148 (235)
                      |+++--|.+|++|-+.+.+.    ...+.+|.-||.|+..+||++.+++|+.|.+|++|-+.=|.+.+.+-  .|...|+
T Consensus       523 LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm  596 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVM  596 (888)
T ss_pred             EEEEeccCeEEEEEecceee----eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh--cccCcee
Confidence            99999999999999998775    77889999999999999999999999999999999999898877654  4556799


Q ss_pred             eeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          149 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       149 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      ++.|-|...++.+++.|+.|+-||-...+.+..+.+|...|++++.+|+|.++++++  .+|++|.-..
T Consensus       597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            999999999999999999999999999999999999999999999999999999998  6799998754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2.3e-29  Score=207.62  Aligned_cols=198  Identities=12%  Similarity=0.191  Sum_probs=162.9

Q ss_pred             hcccccceeEEEeecCCCeeEEEeccceEEEEecCcc----e----eeeeeecc-CCceEEEcC-CCCEEEEEecCCeEE
Q 026679           10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN----A----CQGILRLR-GRPTVAFDQ-QGLVFAVAMEAGAIK   79 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----~----~~~~~~~~-~~~~~~~~~-~~~~l~~~~~dg~v~   79 (235)
                      +..|.+.|.+++|+|++++|++|+.|+.|+|||+...    .    ....+..+ ....++|++ ++..|++++.||.|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            4568999999999999999999999999999997532    1    11122222 233488887 578999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe-CCCc
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQ  157 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  157 (235)
                      +||+.+.+.    ...+.+|...|.+++|+| ++.+|++++.|+.|++||++++.....+..+   ..+.++.|+ +++.
T Consensus       559 lWd~~~~~~----~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~g~  631 (793)
T PLN00181        559 VWDVARSQL----VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK---ANICCVQFPSESGR  631 (793)
T ss_pred             EEECCCCeE----EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC---CCeEEEEEeCCCCC
Confidence            999987553    556678999999999997 7889999999999999999998877666532   458889995 5799


Q ss_pred             EEEEeCCCCcEEEEEcCCCc-eeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          158 YVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      +|++|+.||.|++||+++.+ .+..+.+|...|.++.|. ++.++++++  +.+++||+..
T Consensus       632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence            99999999999999998765 466778899999999997 677888886  7899999864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.3e-30  Score=173.38  Aligned_cols=206  Identities=21%  Similarity=0.318  Sum_probs=177.3

Q ss_pred             CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc--eeeeeeeccCCceEEEcCCCCEEEEEecCCeE
Q 026679            1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus         1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v   78 (235)
                      +++|+.++.|++|.+.|+.++|+.+...+++|+.|.++++||.+..  ++++.+......+..+.-.+..+++|+.||++
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtv  167 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTV  167 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcE
Confidence            4689999999999999999999999999999999999999999865  56677766556666666678899999999999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      +.||++.+..    .  ......+|++++|+++++..++++-|+++++.|-.+|+.+..+..+.....-..++++.....
T Consensus       168 RtydiR~G~l----~--sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth  241 (307)
T KOG0316|consen  168 RTYDIRKGTL----S--SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH  241 (307)
T ss_pred             EEEEeeccee----e--hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee
Confidence            9999998764    2  223346899999999999999999999999999999999999988877766677888888899


Q ss_pred             EEEeCCCCcEEEEEcCCCceeeeecCCCcc-eeEEEeecCCCEEEEcc-cceEEee
Q 026679          159 VVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAMFVAAS-SVLSFWI  212 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-~~i~iw~  212 (235)
                      +++|++||.+++||+.+...+..+..+... +.++.++|....++++. +....|.
T Consensus       242 V~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~  297 (307)
T KOG0316|consen  242 VFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY  297 (307)
T ss_pred             EEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence            999999999999999999999999888776 89999999876666665 5566664

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.6e-30  Score=198.77  Aligned_cols=207  Identities=20%  Similarity=0.294  Sum_probs=175.0

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcC-CCCEEEEEecCCeEEEE
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQ-QGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~~~dg~v~i~   81 (235)
                      .++++.|+||.+.|.++.||.+ ++|+++|.|.+||+|++....+++.+.... +++++|+| |.++|++|+-||.++||
T Consensus       359 ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiW  437 (712)
T KOG0283|consen  359 EKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLW  437 (712)
T ss_pred             ccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEe
Confidence            4678999999999999999974 699999999999999999999999998766 66799999 88999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCC------CCcceeeEEeCC
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS------PNTNTEATFTPD  155 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------~~~i~~~~~~~~  155 (235)
                      ++...+     ......-..-|++++|.|||+..++|+.+|.+++|+....+.........+      ...|+.+.|.|.
T Consensus       438 sI~d~~-----Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~  512 (712)
T KOG0283|consen  438 SISDKK-----VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG  512 (712)
T ss_pred             ecCcCe-----eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC
Confidence            998755     334444557899999999999999999999999999988877665544322      236999999984


Q ss_pred             -CcEEEEeCCCCcEEEEEcCCCceeeeecCCCc--ceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          156 -GQYVVSGSGDGTLHAWNINTRNEVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       156 -~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                       ...+++.+.|..|+|||.++..++..++++..  .-....|+.||++|++++  ..+++|+++..
T Consensus       513 ~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  513 DPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             CCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence             44688888999999999999999888886633  345678999999999999  55999998543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=7.5e-30  Score=197.75  Aligned_cols=211  Identities=18%  Similarity=0.299  Sum_probs=183.9

Q ss_pred             hhhhhhh-hcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679            3 DNRILRY-FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         3 ~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      +++.+.. +.||.+.|+++++...+..+++|+.|.++++||..++++...+.+|...+.+++-....+++|+.|.+|++|
T Consensus       237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW  316 (537)
T KOG0274|consen  237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVW  316 (537)
T ss_pred             cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEE
Confidence            4555666 999999999999987778999999999999999999999999999998888888888899999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                      ++.++..    ...+.+|..+|+++..+  +.++++|+.|+.|.+||+.+++++..+..  |...|.++.+.+. ..+++
T Consensus       317 ~v~n~~~----l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g--H~~~V~sl~~~~~-~~~~S  387 (537)
T KOG0274|consen  317 DVTNGAC----LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG--HTGRVYSLIVDSE-NRLLS  387 (537)
T ss_pred             eccCcce----EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC--CcceEEEEEecCc-ceEEe
Confidence            9997664    55566699999999997  77999999999999999999999887765  6677999988665 89999


Q ss_pred             eCCCCcEEEEEcCCC-ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCCCCC
Q 026679          162 GSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDEST  224 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~~~~  224 (235)
                      |+.|+.|++||+++. +++.++.+|.+.+..+.+  .+++|++++  +.|++||.+..........
T Consensus       388 gs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  388 GSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             eeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence            999999999999999 999999999988866655  567888887  8899999987665544433

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=4.7e-29  Score=169.83  Aligned_cols=212  Identities=17%  Similarity=0.218  Sum_probs=177.3

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~   86 (235)
                      .++||..+++.+.++.+|.+|++++.|.+..||-..+|+.+.++.+|...+  +..+.+.+.+++|+.|.++++||++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            478999999999999999999999999999999998999999999999776  777888999999999999999999998


Q ss_pred             CCCCceeEeecCCCcceeEEEEccCCCeEEEecC-----CCcEEEEEcCC-------CceeeeeccCCCCCcceeeEEeC
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-----NNNIYVLDAYG-------GEKRCGFSLEPSPNTNTEATFTP  154 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~-------~~~~~~~~~~~~~~~i~~~~~~~  154 (235)
                      +.    ... -....+|..+.|+++|++++...+     .+.|.++|++.       .++...+.  .+...++.+.|.|
T Consensus        85 k~----la~-~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~--t~~skit~a~Wg~  157 (327)
T KOG0643|consen   85 KQ----LAT-WKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP--TPDSKITSALWGP  157 (327)
T ss_pred             cE----EEE-eecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec--CCccceeeeeecc
Confidence            85    222 234578999999999998777654     46799999983       33343333  3446799999999


Q ss_pred             CCcEEEEeCCCCcEEEEEcCCCce-eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC-CCCCCCCCC
Q 026679          155 DGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN-STDESTDPQ  227 (235)
Q Consensus       155 ~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~-~~~~~~~~~  227 (235)
                      -+++|++|.+||.|..||+++++. +.....|...|+.|+++||..++++++  .+-++||..+-+. +++....|.
T Consensus       158 l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv  234 (327)
T KOG0643|consen  158 LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPV  234 (327)
T ss_pred             cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccc
Confidence            999999999999999999999754 555678999999999999999999999  6699999976543 344444443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.2e-29  Score=195.92  Aligned_cols=215  Identities=16%  Similarity=0.215  Sum_probs=188.7

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~   79 (235)
                      .+.+++.++.||-+.|..+.|++.-.+++++|.|.+|+||+..+++++..+.+|...+  ..|+|....+++++-|-+|+
T Consensus        81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR  160 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR  160 (1202)
T ss_pred             ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence            3567889999999999999999999999999999999999999999999999998665  77999999999999999999


Q ss_pred             EEeccCCCCC-------------------------CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce
Q 026679           80 LFDSRSYDKG-------------------------PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK  134 (235)
Q Consensus        80 i~d~~~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  134 (235)
                      +||+......                         ....+.+.+|...|+-++|+|.-..+++|++|..|++|.+...+.
T Consensus       161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence            9998642211                         112345678999999999999999999999999999999987666


Q ss_pred             eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeC
Q 026679          135 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIP  213 (235)
Q Consensus       135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~  213 (235)
                      -..-...+|.+.|.++-|+|...++++.++|++|+|||+...+.++++.......+.++-+|..+++++|- +.+.||.+
T Consensus       241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl  320 (1202)
T KOG0292|consen  241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL  320 (1202)
T ss_pred             eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence            55555667888899999999999999999999999999999999999987788999999999999999986 66777777


Q ss_pred             CCC
Q 026679          214 NPS  216 (235)
Q Consensus       214 ~~~  216 (235)
                      +..
T Consensus       321 eRE  323 (1202)
T KOG0292|consen  321 ERE  323 (1202)
T ss_pred             ccc
Confidence            643

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.7e-30  Score=196.98  Aligned_cols=201  Identities=12%  Similarity=0.170  Sum_probs=156.7

Q ss_pred             hhhhc-ccccceeEEEeecCCCeeEEEeccceEEEEecCcce--------------------------------------
Q 026679            7 LRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--------------------------------------   47 (235)
Q Consensus         7 ~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--------------------------------------   47 (235)
                      .+.++ +|.+.|+++.||+||++||+|+.|+.|+||.+...+                                      
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            45566 899999999999999999999999999999875400                                      


Q ss_pred             ----------------------eeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcce
Q 026679           48 ----------------------CQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV  103 (235)
Q Consensus        48 ----------------------~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v  103 (235)
                                            ++..+.+|...+  +.|+. ..+|++++.|.+|++|++...+.     +....|...|
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~C-----L~~F~HndfV  412 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKEC-----LKVFSHNDFV  412 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcce-----eeEEecCCee
Confidence                                  001111222223  34443 45899999999999999987653     4556799999


Q ss_pred             eEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee
Q 026679          104 CDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW  182 (235)
Q Consensus       104 ~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  182 (235)
                      +|++|+| |.+++++|+-|+.|++|++...+...-..++   .-|++++|.|||++.+.|+.+|.+++|+....+.....
T Consensus       413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~---~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR---DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             EEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh---hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            9999999 8899999999999999999888776544443   56999999999999999999999999999877765544


Q ss_pred             cC--C------CcceeEEEeecCCC--EEEEcc-cceEEeeCCCC
Q 026679          183 NG--N------IGVVACLKWAPRRA--MFVAAS-SVLSFWIPNPS  216 (235)
Q Consensus       183 ~~--~------~~~v~~~~~~~~~~--~l~~~~-~~i~iw~~~~~  216 (235)
                      ..  |      ...|+++.|.|...  .|++.. ..|+|||.+..
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~  534 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK  534 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence            21  1      23799999998443  555554 78999999543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=2.4e-29  Score=183.13  Aligned_cols=195  Identities=21%  Similarity=0.303  Sum_probs=170.3

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD   92 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~   92 (235)
                      ..|++++|+.+|..||+|+.||.+++|+. ++..+.++..|..++  +.|+..|.+|++++.|+++.+||..++..    
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~----  310 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV----  310 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE----
Confidence            67999999999999999999999999995 788888888888777  88999999999999999999999987765    


Q ss_pred             eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679           93 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN  172 (235)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  172 (235)
                      ...+.-|..+-..+.|..+. .+++++.|+.|+++.+....+...+..  |.+.|.++.|+|.|.+|++++.|+++++|.
T Consensus       311 ~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~G--H~g~V~alk~n~tg~LLaS~SdD~TlkiWs  387 (524)
T KOG0273|consen  311 KQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIG--HHGEVNALKWNPTGSLLASCSDDGTLKIWS  387 (524)
T ss_pred             EEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeec--ccCceEEEEECCCCceEEEecCCCeeEeee
Confidence            44444566666778888654 589999999999999988888877765  667899999999999999999999999999


Q ss_pred             cCCCceeeeecCCCcceeEEEeecCC---------CEEEEcc--cceEEeeCCCCC
Q 026679          173 INTRNEVACWNGNIGVVACLKWAPRR---------AMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~--~~i~iw~~~~~~  217 (235)
                      .........+.+|...|..+.|+|+|         ..+++++  +++++||+..+.
T Consensus       388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv  443 (524)
T KOG0273|consen  388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV  443 (524)
T ss_pred             cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc
Confidence            99999999999999999999999954         4666666  889999997654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.2e-29  Score=171.47  Aligned_cols=197  Identities=17%  Similarity=0.280  Sum_probs=163.0

Q ss_pred             ccceeEEEeecCC-CeeEEEeccceEEEEecCcc-eeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEEEEeccCCCC
Q 026679           14 KERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVN-ACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSYDK   88 (235)
Q Consensus        14 ~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~   88 (235)
                      .+.+..++|+++. +.+++++.||++++||+... .++..++.|...+  +.|++ ....+++++.|++|++|+...++.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            4678899999964 67899999999999996543 4777888887666  66776 567788889999999999987665


Q ss_pred             CCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEEeCCCC
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDG  166 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg  166 (235)
                          ...+.+|..-|...+|+| .++.+++++.|+.+++||++.......+..  |...+.++.|+. +.+.|++|+.|+
T Consensus       140 ----v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a--h~~Eil~cdw~ky~~~vl~Tg~vd~  213 (311)
T KOG0277|consen  140 ----VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA--HNSEILCCDWSKYNHNVLATGGVDN  213 (311)
T ss_pred             ----eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe--ccceeEeecccccCCcEEEecCCCc
Confidence                667889999999999999 678899999999999999987655544444  446699999998 567889999999


Q ss_pred             cEEEEEcCCC-ceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCC
Q 026679          167 TLHAWNINTR-NEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       167 ~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~  216 (235)
                      .|++||+++. .++.++.+|.-.|..+.|+|.. ..|++++  -+++||++...
T Consensus       214 ~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  214 LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence            9999999875 4678889999999999999965 5667777  66999998743

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.4e-29  Score=173.51  Aligned_cols=202  Identities=18%  Similarity=0.262  Sum_probs=168.2

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCC--EEEEEecCCeEEEE
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGL--VFAVAMEAGAIKLF   81 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~--~l~~~~~dg~v~i~   81 (235)
                      ++..+..|.++|++++.+  +.++|+||.|.+|+|||++.......+-.|...+  +.|.+.-.  .|++|+.||.|.+|
T Consensus        35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            355678999999999997  7999999999999999999988888887776544  77877554  89999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-------
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-------  154 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-------  154 (235)
                      +......    ...+.+|...|+.++.+|.++.-++.+.|+.+++||+-.|+.-...++...   .+.+.|+|       
T Consensus       113 ~~~~W~~----~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  113 RVGSWEL----LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK---ATLVSWSPQGDHFVV  185 (362)
T ss_pred             EcCCeEE----eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc---ceeeEEcCCCCEEEE
Confidence            9987654    667889999999999999999999999999999999988766554443322   12233433       


Q ss_pred             --------------------------------CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEee--cCCCE
Q 026679          155 --------------------------------DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA--PRRAM  200 (235)
Q Consensus       155 --------------------------------~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~  200 (235)
                                                      ++..|++|++|+.|.+||..+..+...+.+|..+|.++.+.  |++.+
T Consensus       186 ~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~  265 (362)
T KOG0294|consen  186 SGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEY  265 (362)
T ss_pred             EeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceE
Confidence                                            34578888999999999999999999999999999999853  56889


Q ss_pred             EEEcc--cceEEeeCCCC
Q 026679          201 FVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       201 l~~~~--~~i~iw~~~~~  216 (235)
                      |++++  |.|+|||++..
T Consensus       266 lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  266 LVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEEeccCceEEEEEcccc
Confidence            99987  88999999876

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.1e-29  Score=187.03  Aligned_cols=210  Identities=17%  Similarity=0.271  Sum_probs=166.7

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc-------eeeeeeeccCCceEEEcCCCCEEEEEecCCeEEE
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-------ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      ..+++|+..|.++++.|.|..|++|+.|.+|++||+...       +.+.-...|.+.++.|++.+..|++.+.....++
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            357899999999999999999999999999999998642       2333445677788999999999999999999999


Q ss_pred             EeccCCCCC--------CceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCc-eeeeec---cCCCCCcc
Q 026679           81 FDSRSYDKG--------PFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGE-KRCGFS---LEPSPNTN  147 (235)
Q Consensus        81 ~d~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~-~~~~~~---~~~~~~~i  147 (235)
                      +|-...+..        -.......+|...+++.+|+|+ .+.+++++.||++++||+...+ ..+.+.   ......++
T Consensus       241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~  320 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV  320 (641)
T ss_pred             EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence            997654321        1123345689999999999995 5678999999999999997643 223332   23344678


Q ss_pred             eeeEEeCCCcEEEEeCCCCcEEEEEcCCCce---eeeecCCCc--ceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          148 TEATFTPDGQYVVSGSGDGTLHAWNINTRNE---VACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       148 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +.++|+|+|++||+|..||.|.+|+..+...   ...-.+|..  .|++|.|+++|++|++-+  +++++||++..+
T Consensus       321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            9999999999999999999999999854322   233356766  899999999999999988  779999997543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=9.5e-29  Score=175.60  Aligned_cols=201  Identities=21%  Similarity=0.307  Sum_probs=165.6

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC-------------------------cceeeeeeeccCCce-
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-------------------------VNACQGILRLRGRPT-   59 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-------------------------~~~~~~~~~~~~~~~-   59 (235)
                      .++..+||.+.|-+++..++|..+++||.|.+|+||+..                         ++.++..+.+|..++ 
T Consensus       185 ~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs  264 (423)
T KOG0313|consen  185 ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVS  264 (423)
T ss_pred             HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccccee
Confidence            445566999999999999999999999999999999932                         122344556666555 


Q ss_pred             -EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeee
Q 026679           60 -VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCG  137 (235)
Q Consensus        60 -~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~  137 (235)
                       +.|++ ...+++++.|.+|+.||+.++..    .... .....+.++..+|..++|++|+.|..+++||.+++. .+..
T Consensus       265 ~V~w~d-~~v~yS~SwDHTIk~WDletg~~----~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~  338 (423)
T KOG0313|consen  265 SVVWSD-ATVIYSVSWDHTIKVWDLETGGL----KSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS  338 (423)
T ss_pred             eEEEcC-CCceEeecccceEEEEEeecccc----eeee-ecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeE
Confidence             77777 77899999999999999998775    2222 234678999999999999999999999999999764 3344


Q ss_pred             eccCCCCCcceeeEEeCCC-cEEEEeCCCCcEEEEEcCCCc-eeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          138 FSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       138 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      +.+.+|.+.|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+.+|...|.++.|.. +..+++|+  ++++|+..
T Consensus       339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecc
Confidence            5667788899999999954 567899999999999999877 8999999999999999984 67888888  67888764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2e-30  Score=181.57  Aligned_cols=209  Identities=20%  Similarity=0.278  Sum_probs=175.0

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc----------CCceEEEcCCCCEEEEEecCCeEEEE
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR----------GRPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      +....+-|..|+|||++|++|+.||.|.+||..+|+..+-++-.          .+.++.|+.|.+++++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            34567889999999999999999999999999998766554322          23458899999999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                      .++++.+   ....-..|...|+++.|+.|+..+++++.|.++++.-+.+|+.++.+..  |...|+...|.++|..+++
T Consensus       291 ri~tG~C---lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG--HsSyvn~a~ft~dG~~iis  365 (508)
T KOG0275|consen  291 RIETGQC---LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG--HSSYVNEATFTDDGHHIIS  365 (508)
T ss_pred             EEecchH---HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC--ccccccceEEcCCCCeEEE
Confidence            9999876   2222347899999999999999999999999999999999999987664  5567999999999999999


Q ss_pred             eCCCCcEEEEEcCCCceeeeecCC--CcceeEEEeecC-CCEEEEcc--cceEEeeCCCCCCCCCCCCC
Q 026679          162 GSGDGTLHAWNINTRNEVACWNGN--IGVVACLKWAPR-RAMFVAAS--SVLSFWIPNPSSNSTDESTD  225 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~-~~~l~~~~--~~i~iw~~~~~~~~~~~~~~  225 (235)
                      ++.||+|++|+.++.+++.+++..  ..+|.++..-|. -..++.+.  +++.|.++.+.-...+.++.
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGk  434 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGK  434 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCC
Confidence            999999999999999999888743  457888887774 35666665  77999998887776666543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.9e-29  Score=180.91  Aligned_cols=203  Identities=24%  Similarity=0.406  Sum_probs=170.4

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      .+.++..+|.||++.|+++.|......+++|+.|.+|+.||+....+.+++-... ..-++.+  ...+++|-.|+.|++
T Consensus       249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRf  326 (459)
T KOG0288|consen  249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRF  326 (459)
T ss_pred             cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEE
Confidence            4678899999999999999999876669999999999999999887776654332 2224444  567888999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC--CcceeeEEeCCCcE
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP--NTNTEATFTPDGQY  158 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~  158 (235)
                      ||.+....    ......+ +.|+++..++++..+++++.|.++.+.|+++.+....+...+..  ...+.+.|||++.|
T Consensus       327 wD~Rs~~~----~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y  401 (459)
T KOG0288|consen  327 WDIRSADK----TRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY  401 (459)
T ss_pred             EeccCCce----eeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence            99998765    4444333 48999999999999999999999999999999988877654322  34788999999999


Q ss_pred             EEEeCCCCcEEEEEcCCCceeeeecCCCc--ceeEEEeecCCCEEEEcc--cceEEe
Q 026679          159 VVSGSGDGTLHAWNINTRNEVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFW  211 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~~i~iw  211 (235)
                      +++|+.||.|+||++.++++...+.....  .|++++|+|.|..+++++  +.+.+|
T Consensus       402 vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  402 VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            99999999999999999999888876554  499999999999999998  558888

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=3.5e-28  Score=179.31  Aligned_cols=223  Identities=15%  Similarity=0.238  Sum_probs=187.9

Q ss_pred             chhhhhhhhcccccceeEEEeecCCC-eeEEEeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v   78 (235)
                      ++|.-+.++.||+..|+++.|-|... +++||+.|++|.+|+=...+...++..|.  +.++.|+|||+++++.+.||.+
T Consensus       135 DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki  214 (603)
T KOG0318|consen  135 DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI  214 (603)
T ss_pred             cCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence            45667788999999999999999765 59999999999999876666666777666  4559999999999999999999


Q ss_pred             EEEeccCCCCCCceeEeec---CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCC-CCcceeeEEeC
Q 026679           79 KLFDSRSYDKGPFDTFLVG---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS-PNTNTEATFTP  154 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~i~~~~~~~  154 (235)
                      .+||-.+++.    ...+.   +|.+.|.+++|+||+..+++++.|.++++||+.+.++.+++.+... ...-..+.|. 
T Consensus       215 ~iyDGktge~----vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-  289 (603)
T KOG0318|consen  215 YIYDGKTGEK----VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-  289 (603)
T ss_pred             EEEcCCCccE----EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-
Confidence            9999988875    44444   8999999999999999999999999999999999999988876543 1223344564 


Q ss_pred             CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCCCCCCCCCCc
Q 026679          155 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDESTDPQATV  230 (235)
Q Consensus       155 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~~~~~~~~~i  230 (235)
                       +..|++.+.+|.|.+++...+..+..+.+|...|+++..+|++.+|++|+  |.|.-|+...+....+........|
T Consensus       290 -kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI  366 (603)
T KOG0318|consen  290 -KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI  366 (603)
T ss_pred             -CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence             56899999999999999999999999999999999999999999999998  8899999987766655444333433

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5.6e-29  Score=187.12  Aligned_cols=203  Identities=23%  Similarity=0.352  Sum_probs=167.3

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec-cCCceEEEcCCCCEEEEEecCCeEEEEeccCCC
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD   87 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~   87 (235)
                      ....+...|+++.|+++|.+|+.|..+|.|.|||..+.+.+..+.. |...+.+...++..+.+|+.++.|..+|++..+
T Consensus       212 l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~  291 (484)
T KOG0305|consen  212 LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ  291 (484)
T ss_pred             eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecch
Confidence            3344578999999999999999999999999999999988888888 776664444458899999999999999999866


Q ss_pred             CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEEeC--C
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGS--G  164 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~  164 (235)
                      ...  . .+.+|...|+.+.|++|+.++++|+.|+.+.+||....++..  ....|...|.+++|+| ...+||+|+  .
T Consensus       292 ~~~--~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~--~~~~H~aAVKA~awcP~q~~lLAsGGGs~  366 (484)
T KOG0305|consen  292 HVV--S-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF--TFTEHTAAVKALAWCPWQSGLLATGGGSA  366 (484)
T ss_pred             hhh--h-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE--EEeccceeeeEeeeCCCccCceEEcCCCc
Confidence            411  1 377899999999999999999999999999999996666554  4456667899999999 566788765  4


Q ss_pred             CCcEEEEEcCCCce-------------------------------------------eeeecCCCcceeEEEeecCCCEE
Q 026679          165 DGTLHAWNINTRNE-------------------------------------------VACWNGNIGVVACLKWAPRRAMF  201 (235)
Q Consensus       165 dg~i~v~d~~~~~~-------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l  201 (235)
                      |+.|++||..+++.                                           +..+.+|...|..++++|||..+
T Consensus       367 D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i  446 (484)
T KOG0305|consen  367 DRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETI  446 (484)
T ss_pred             ccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEE
Confidence            88888888776532                                           33456788899999999999999


Q ss_pred             EEcc--cceEEeeCCCC
Q 026679          202 VAAS--SVLSFWIPNPS  216 (235)
Q Consensus       202 ~~~~--~~i~iw~~~~~  216 (235)
                      ++|+  +++++|++-..
T Consensus       447 ~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  447 VTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEecccCcEEeccccCC
Confidence            9987  77999988553

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.8e-28  Score=166.49  Aligned_cols=200  Identities=20%  Similarity=0.323  Sum_probs=168.0

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee--eccCCce--EEEcC-CCCEEEEEecCCeEEEEe
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d   82 (235)
                      +.+++|.++|.+++|+.+|..|++|+.|+++++|+++..+.....  .+|...+  ++|+| +...|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            678899999999999999999999999999999999877554443  3444333  77777 678999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      ++..+.    ........+. .-+.|+|+|++++++..|..|...|.++.+.....+..   ..+..++|+-++.+++..
T Consensus        94 ~r~~k~----~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~---~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   94 IRSGKC----TARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK---FEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             eccCcE----EEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc---ceeeeeeecCCCCEEEEe
Confidence            998775    3322222233 34789999999999999999999999998877665544   346778999888888888


Q ss_pred             CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          163 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       163 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      ...|.|.|......+++..+++|.....||.|+|+|+++++|+  ..+.+||++.
T Consensus       166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence            8889999999999999999999999999999999999999999  5599999875

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.6e-28  Score=166.76  Aligned_cols=192  Identities=24%  Similarity=0.423  Sum_probs=167.4

Q ss_pred             hhcccccceeEEEeecC-CCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679            9 YFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~   86 (235)
                      ..++|.+.|-.++|+|. ...|++++.|.+|++||++.+++...+.....+. +.|+|+|+++++++.|..|...|.++.
T Consensus        59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~  138 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTY  138 (313)
T ss_pred             cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEeccc
Confidence            35789999999999985 4789999999999999999999999988877776 999999999999999999999999886


Q ss_pred             CCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG  166 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  166 (235)
                      +.     .........+..++|+-++..++.....|.|.+......+++..++  .|+....|+.|+|+|++||+|+.|-
T Consensus       139 ~~-----~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~--AH~snCicI~f~p~GryfA~GsADA  211 (313)
T KOG1407|consen  139 KI-----VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK--AHPSNCICIEFDPDGRYFATGSADA  211 (313)
T ss_pred             ce-----eehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc--cCCcceEEEEECCCCceEeeccccc
Confidence            63     2233344567889999888877777778999999998877776554  5556789999999999999999999


Q ss_pred             cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcccc
Q 026679          167 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSV  207 (235)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  207 (235)
                      .+.+||+...-++..+..+.-+|..+.|+.+|++|++++.+
T Consensus       212 lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED  252 (313)
T KOG1407|consen  212 LVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED  252 (313)
T ss_pred             eeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence            99999999999999999999999999999999999999944

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.6e-29  Score=178.28  Aligned_cols=204  Identities=17%  Similarity=0.261  Sum_probs=169.0

Q ss_pred             CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce---eeeeeeccCCceEEEcCCCCEEEEEecCCe
Q 026679            1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA---CQGILRLRGRPTVAFDQQGLVFAVAMEAGA   77 (235)
Q Consensus         1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~   77 (235)
                      +++|+++.++-+|.+.|..+.|+  +.+++++|.|.++.+||+....   +.+.+.+|...+-...-+.+++++++.|.+
T Consensus       264 v~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRT  341 (499)
T KOG0281|consen  264 VNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT  341 (499)
T ss_pred             ccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCce
Confidence            36899999999999999999998  4799999999999999998764   344566666555344446779999999999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      +++|++.+.+.    ...+.+|...|.|+.+  .++++++|+.|.+|++||+..|.++..++  +|+.-|.++.|  |.+
T Consensus       342 ikvW~~st~ef----vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe--GHEeLvRciRF--d~k  411 (499)
T KOG0281|consen  342 IKVWSTSTCEF----VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRF--DNK  411 (499)
T ss_pred             EEEEeccceee----ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh--chHHhhhheee--cCc
Confidence            99999998775    6778899999988877  48899999999999999999999988665  45567999999  567


Q ss_pred             EEEEeCCCCcEEEEEcCCCce---------eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          158 YVVSGSGDGTLHAWNINTRNE---------VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      .+++|+.||+|+|||+..+..         +.++..|.+.|..+.|  |...+++++  .+|-|||+.....
T Consensus       412 rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  412 RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence            999999999999999986542         3455678899999999  456777776  7799999965543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=1.1e-28  Score=178.06  Aligned_cols=199  Identities=18%  Similarity=0.291  Sum_probs=179.5

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD   92 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~   92 (235)
                      ..++++...|....+++|+.|.++.++|...++.+..+++|...+  +.++|+...+++++.|..|++|.......    
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~----  295 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE----  295 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----
Confidence            457888888877889999999999999999999999999999776  88999999999999999999999877654    


Q ss_pred             eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679           93 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN  172 (235)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  172 (235)
                      ......|..+|+.+..+|.|+||++++.|+...+.|++++..+...........+++.+|+|||..|.+|..||.++|||
T Consensus       296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd  375 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD  375 (506)
T ss_pred             ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence            44566799999999999999999999999999999999999887766554446689999999999999999999999999


Q ss_pred             cCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          173 INTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +.++..+..|.+|.++|..++|+.+|.+|++++  +.+++||++..+
T Consensus       376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence            999999999999999999999999999999998  569999996543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1e-28  Score=180.32  Aligned_cols=205  Identities=15%  Similarity=0.219  Sum_probs=170.4

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCC-CCEEEEEecCCeEEEE
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQ-GLVFAVAMEAGAIKLF   81 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~dg~v~i~   81 (235)
                      ...+.+......|.++.|-.||++|++|...|.|+|+|+.+...+..+..|..++  ..|+|+ +..|++|+.|+.+++|
T Consensus        59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~  138 (487)
T KOG0310|consen   59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW  138 (487)
T ss_pred             hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence            3445566677899999999999999999999999999987777888888888776  889994 5678888889999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      |+.+...    ...+.+|...|.+.+|+|. +..+++|+.||.|++||.+... ....++ .|..+|..+.+-|.|..++
T Consensus       139 d~s~a~v----~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~el-nhg~pVe~vl~lpsgs~ia  212 (487)
T KOG0310|consen  139 DLSTAYV----QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVEL-NHGCPVESVLALPSGSLIA  212 (487)
T ss_pred             EcCCcEE----EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEe-cCCCceeeEEEcCCCCEEE
Confidence            9988652    6678899999999999995 5578899999999999999874 222333 2456799999999999999


Q ss_pred             EeCCCCcEEEEEcCCCce-eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          161 SGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      +++.. .++|||+.+|.. +.....|...|+|+.+..++..|++++  +.+++|++..-
T Consensus       213 sAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  213 SAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             EcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce
Confidence            98865 699999985554 455555999999999999999999998  88999996543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=6.8e-29  Score=182.84  Aligned_cols=205  Identities=23%  Similarity=0.386  Sum_probs=161.9

Q ss_pred             hhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcce-eeeeeeccC-------CceEEEcCCCCEEEEEecCCeEE
Q 026679            9 YFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNA-CQGILRLRG-------RPTVAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~-------~~~~~~~~~~~~l~~~~~dg~v~   79 (235)
                      .-+||...++|.+|+|.. +.|+|++.||++|+||+...+ ....++...       ...++|+++++.||+|+.||.|.
T Consensus       263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ  342 (641)
T KOG0772|consen  263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ  342 (641)
T ss_pred             ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence            347999999999999975 679999999999999997643 344443221       23489999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCc--ceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCCC
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTA--EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDG  156 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~  156 (235)
                      +|+.......+. ...-..|..  .|+++.|++||++|++-+.|+++++||++..+ ++.....-....+-+.++|||+.
T Consensus       343 ~W~~~~~~v~p~-~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~  421 (641)
T KOG0772|consen  343 IWDKGSRTVRPV-MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD  421 (641)
T ss_pred             eeecCCcccccc-eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc
Confidence            999866554333 233345665  89999999999999999999999999999754 34433333334556789999999


Q ss_pred             cEEEEeCC------CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEe-eCC
Q 026679          157 QYVVSGSG------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFW-IPN  214 (235)
Q Consensus       157 ~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw-~~~  214 (235)
                      ++|++|+.      .|.+.+||..+...+..+......|..+.|+|.-+.|.+++  |+++|| |.+
T Consensus       422 kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  422 KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             eEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence            99999864      57899999999999998887788999999999877776665  677666 443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.5e-28  Score=176.82  Aligned_cols=206  Identities=19%  Similarity=0.341  Sum_probs=166.3

Q ss_pred             hhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcce-------eeeeeeccCCce--EEEcC-CCCEEEEEecCC
Q 026679            8 RYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNA-------CQGILRLRGRPT--VAFDQ-QGLVFAVAMEAG   76 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~-------~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg   76 (235)
                      ..|.||.+.=.+++|++.. ..|++++.|++|++||+....       ....+..|...+  ++|++ +..+|++++.|+
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~  250 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG  250 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence            3688999988899999964 579999999999999997543       344566676655  89998 667899999999


Q ss_pred             eEEEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC
Q 026679           77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus        77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      .+.|||+++.  ..........|...+.|++|+| ++..||+|+.|++|.+||+|+... ....+..|...|.++.|+|.
T Consensus       251 ~L~iwD~R~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh  327 (422)
T KOG0264|consen  251 KLMIWDTRSN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPH  327 (422)
T ss_pred             eEEEEEcCCC--CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCC
Confidence            9999999973  2233566778999999999999 566788889999999999998665 34456677788999999995


Q ss_pred             -CcEEEEeCCCCcEEEEEcCCC--------------ceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCC
Q 026679          156 -GQYVVSGSGDGTLHAWNINTR--------------NEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS  216 (235)
Q Consensus       156 -~~~l~~~~~dg~i~v~d~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~  216 (235)
                       ...|++++.|+.+.|||+..-              +++..-.||...|..+.|+|+..+++++-   +.+.||.+...
T Consensus       328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence             567889999999999998631              22355568999999999999998877664   77999998643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5e-27  Score=163.29  Aligned_cols=213  Identities=13%  Similarity=0.191  Sum_probs=172.9

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc--CCceEEEcCCCCEEEEEec--CCeE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR--GRPTVAFDQQGLVFAVAME--AGAI   78 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~--dg~v   78 (235)
                      .-++.+.|+.-...|+++.|+++|.++++++.|.++++||..+++..+++..+  +...++|......++.++.  |.+|
T Consensus         3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence            34556677777889999999999999999999999999999999999999877  4556888777666666665  8899


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec-------------------
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-------------------  139 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-------------------  139 (235)
                      +..++.+.+.    ..-+.+|...|..++.+|-++.+++++.|++|++||++..++...+.                   
T Consensus        83 ryLsl~dNky----lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~  158 (311)
T KOG1446|consen   83 RYLSLHDNKY----LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALA  158 (311)
T ss_pred             EEEEeecCce----EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEe
Confidence            9999988775    77788999999999999999999999999999999998554422211                   


Q ss_pred             -----------------------cC-CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcc---eeEE
Q 026679          140 -----------------------LE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV---VACL  192 (235)
Q Consensus       140 -----------------------~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~---v~~~  192 (235)
                                             +. ......+.+.|||||++|+.++..+.+++.|.-+|..+..+..+...   ....
T Consensus       159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a  238 (311)
T KOG1446|consen  159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA  238 (311)
T ss_pred             cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence                                   11 11244667888899998888888888888888888888888766432   2577


Q ss_pred             EeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          193 KWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       193 ~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      .|+||++++++|+  |.+.+|+++++...
T Consensus       239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v  267 (311)
T KOG1446|consen  239 TFTPDSKFVLSGSDDGTIHVWNLETGKKV  267 (311)
T ss_pred             EECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence            8999999999998  88999999876543

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=3.8e-27  Score=182.32  Aligned_cols=201  Identities=15%  Similarity=0.124  Sum_probs=158.2

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceee-------------eeeeccCCce--EEEcC-CCCEEEEEecCCe
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ-------------GILRLRGRPT--VAFDQ-QGLVFAVAMEAGA   77 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-------------~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~   77 (235)
                      -..|.....++++..+++++.+.....|+...+..+             ..+.+|...+  ++|+| ++++|++++.|+.
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT   99 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence            345666667777777888888887788875443221             1344555444  89999 8899999999999


Q ss_pred             EEEEeccCCCCC---CceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679           78 IKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT  153 (235)
Q Consensus        78 v~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~  153 (235)
                      |++||+......   ......+.+|...|.+++|+|++ +.|++++.|+.|++||+.+++....+.  .|...|.+++|+
T Consensus       100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~--~h~~~V~sla~s  177 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK--CHSDQITSLEWN  177 (493)
T ss_pred             EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc--CCCCceEEEEEE
Confidence            999999764321   11245677899999999999975 689999999999999999988776554  455679999999


Q ss_pred             CCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcc-eeEEEeecCCCEEEEcc------cceEEeeCCCC
Q 026679          154 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAMFVAAS------SVLSFWIPNPS  216 (235)
Q Consensus       154 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~------~~i~iw~~~~~  216 (235)
                      |+|++|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++      +.+++||++..
T Consensus       178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence            99999999999999999999999999888888764 45778999887777653      56999999753

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=1.3e-27  Score=169.11  Aligned_cols=194  Identities=18%  Similarity=0.307  Sum_probs=166.3

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      -+..|..|++.|.+++.+|+.++++||+.|..-.+|++.++.....+..|...+  +.|+.+|.+||+|+-+|.|++|+.
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            345789999999999999999999999999999999999999888888888655  889999999999999999999999


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                      .++..    ...+...-..+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+..  |..++++-.|.|+|+.++++.
T Consensus       136 stg~~----~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G--h~~~ct~G~f~pdGKr~~tgy  209 (399)
T KOG0296|consen  136 STGGE----QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG--HNSPCTCGEFIPDGKRILTGY  209 (399)
T ss_pred             ccCce----EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC--CCCCcccccccCCCceEEEEe
Confidence            98765    444444556788899999999999999999999999998766666654  556799999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeecCC-CcceeEEEeecCCCEEEEcc
Q 026679          164 GDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       164 ~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~  205 (235)
                      .||+|++|++.+++++..+... ..+..++.++..+..++.|+
T Consensus       210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~  252 (399)
T KOG0296|consen  210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN  252 (399)
T ss_pred             cCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence            9999999999999999888633 23566777777776666665

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.4e-27  Score=173.26  Aligned_cols=196  Identities=21%  Similarity=0.254  Sum_probs=165.1

Q ss_pred             hhhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccCC--ceEEEcC-CCCEEEEEecCCeE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQ-QGLVFAVAMEAGAI   78 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~-~~~~l~~~~~dg~v   78 (235)
                      +...++.+++|+.+|..+.|+|.+ ..|++|+.|+.+++||+.+......+.+|..  .+.+++| ++.++++|+.||.|
T Consensus        99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v  178 (487)
T KOG0310|consen   99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV  178 (487)
T ss_pred             cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence            345788999999999999999965 6788999999999999998887657777774  4588988 55689999999999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      ++||++....    ......|..+|..+.+-|.|..+++++ ...+++||+.+|........ .|...|+|+++..++..
T Consensus       179 rl~DtR~~~~----~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~r  252 (487)
T KOG0310|consen  179 RLWDTRSLTS----RVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTR  252 (487)
T ss_pred             EEEEeccCCc----eeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhh-cccceEEEEEeecCCce
Confidence            9999998652    334457889999999999999888776 45799999996655433332 36677999999999999


Q ss_pred             EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      |++|+-|+.+++||+.+.+.++.+. ..++|.+++.+|+++.++.|-
T Consensus       253 LlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGm  298 (487)
T KOG0310|consen  253 LLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGM  298 (487)
T ss_pred             EeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEec
Confidence            9999999999999999999998887 568999999999999999986

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=2.3e-28  Score=173.64  Aligned_cols=211  Identities=19%  Similarity=0.356  Sum_probs=171.9

Q ss_pred             hhhhhhhhcccccceeEEEeecCC---CeeEEEeccceEEEEecCccee----eeeeeccCCce--EEEcCCCCEEEEEe
Q 026679            3 DNRILRYFKGHKERVISLCMSPVN---DSFMSGSLDHSVRIWDLRVNAC----QGILRLRGRPT--VAFDQQGLVFAVAM   73 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~~--~~~~~~~~~l~~~~   73 (235)
                      .|+....+.||.++|.+++|.-..   ..|++++.|.++++|.++.++.    ++...+|...+  +...+++..+++|+
T Consensus       133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS  212 (423)
T KOG0313|consen  133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS  212 (423)
T ss_pred             CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence            477888899999999988885433   3599999999999999887643    33344666554  88889999999999


Q ss_pred             cCCeEEEEeccCCC---------------------CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC
Q 026679           74 EAGAIKLFDSRSYD---------------------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG  132 (235)
Q Consensus        74 ~dg~v~i~d~~~~~---------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  132 (235)
                      .|.++.+|+..+..                     ........+.+|..+|.++.|++ ...+++++.|.+|+.||+.++
T Consensus       213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg  291 (423)
T KOG0313|consen  213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG  291 (423)
T ss_pred             ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence            99999999933211                     11223566789999999999998 567999999999999999999


Q ss_pred             ceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc---eeeeecCCCcceeEEEeecCCCE-EEEcc--c
Q 026679          133 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN---EVACWNGNIGVVACLKWAPRRAM-FVAAS--S  206 (235)
Q Consensus       133 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~  206 (235)
                      +....+...   ....++..+|..++|++|+.|..|++||.+++.   ..+++.+|.+.|.++.|+|...+ |++++  +
T Consensus       292 ~~~~~~~~~---ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  292 GLKSTLTTN---KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             cceeeeecC---cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            888766544   458999999999999999999999999998753   35678899999999999997655 55565  8


Q ss_pred             ceEEeeCCCCC
Q 026679          207 VLSFWIPNPSS  217 (235)
Q Consensus       207 ~i~iw~~~~~~  217 (235)
                      ++++||++...
T Consensus       369 t~klWDvRS~k  379 (423)
T KOG0313|consen  369 TVKLWDVRSTK  379 (423)
T ss_pred             eEEEEEeccCC
Confidence            89999998765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=6.7e-29  Score=172.68  Aligned_cols=215  Identities=17%  Similarity=0.291  Sum_probs=177.6

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee----eccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL----RLRGRPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      ++++|-.|.++|+++.|+|....|++|+.|++|+++|+......+.+    ..+...++.|+|.|.++++|.....+++|
T Consensus       164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY  243 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY  243 (430)
T ss_pred             eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence            56788899999999999999999999999999999999765433322    23456679999999999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                      |+++.+.-.. ...-..|...|+++.+++.++..++++.||.|++||--+++++..+........|.+..|..+|+|+++
T Consensus       244 dv~T~Qcfvs-anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs  322 (430)
T KOG0640|consen  244 DVNTYQCFVS-ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS  322 (430)
T ss_pred             eccceeEeee-cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence            9998764211 113456889999999999999999999999999999999998887765545577999999999999999


Q ss_pred             eCCCCcEEEEEcCCCceeeeecCCC-----cceeEEEeecCCCEEEEcc---cceEEeeCCCCCCCCC
Q 026679          162 GSGDGTLHAWNINTRNEVACWNGNI-----GVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~~~~  221 (235)
                      .+.|..+++|.+.+++.+..+.+..     ..-+...|+....|++.-+   +.+.-||.++.....+
T Consensus       323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l  390 (430)
T KOG0640|consen  323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL  390 (430)
T ss_pred             cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence            9999999999999999999886541     1234566888888888876   6789999877654443

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=8.1e-27  Score=181.65  Aligned_cols=181  Identities=9%  Similarity=0.123  Sum_probs=147.1

Q ss_pred             EeccceEEEEecCcceeeeeeeccCCce--EEEcCC-CCEEEEEecCCeEEEEeccCCCCC----CceeEeecCCCccee
Q 026679           32 GSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKG----PFDTFLVGGDTAEVC  104 (235)
Q Consensus        32 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~----~~~~~~~~~~~~~v~  104 (235)
                      |+.++.+++|+......+..+.+|...+  ++|+|+ +.+|++|+.|+.|++||+.+....    ......+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            5668899999987777777888887655  899996 789999999999999999764321    012234678899999


Q ss_pred             EEEEccCCCeE-EEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec
Q 026679          105 DIKFSNDGKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN  183 (235)
Q Consensus       105 ~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  183 (235)
                      +++|+|++..+ ++++.|+.|++||+++++....+.   +...|.+++|+|+|++|++++.|+.|++||+++++.+..+.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~---~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~  206 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN---MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH  206 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe---cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            99999988764 688999999999999988765553   23569999999999999999999999999999999999999


Q ss_pred             CCCcceeEE-----EeecCCCEEEEcc--c----ceEEeeCCC
Q 026679          184 GNIGVVACL-----KWAPRRAMFVAAS--S----VLSFWIPNP  215 (235)
Q Consensus       184 ~~~~~v~~~-----~~~~~~~~l~~~~--~----~i~iw~~~~  215 (235)
                      +|.+.+...     .|++++.+|++++  +    .++|||++.
T Consensus       207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            998754332     3458888888876  2    599999974

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.9e-27  Score=182.12  Aligned_cols=206  Identities=18%  Similarity=0.263  Sum_probs=177.1

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK   88 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~   88 (235)
                      .+.||...|.+++++.+...+++|+. +.+++|+..+.++++++......+..|.|.+++++.|...|.+.+||+.....
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l  446 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL  446 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence            46789999999999998877777765 68999999999999999988777789999999999999999999999987664


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC-----CceeeeeccC-----CCCCcceeeEEeCCCcE
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-----GEKRCGFSLE-----PSPNTNTEATFTPDGQY  158 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~-----~~~~~i~~~~~~~~~~~  158 (235)
                          .-....|.+.+.+++.+||+..+++++.|.+|++||..-     +...+.+.++     .-+..|.|+.+||||++
T Consensus       447 ----~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  447 ----VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             ----hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence                444558999999999999999999999999999999742     2111111111     12256999999999999


Q ss_pred             EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      |+++-.|.+++||-+.+.+....+.+|.-||.||..+||+..+++|+  .+++||-++-+...
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH  585 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH  585 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh
Confidence            99999999999999999999999999999999999999999999998  88999999876544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3.3e-29  Score=190.87  Aligned_cols=192  Identities=20%  Similarity=0.297  Sum_probs=175.3

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      ..|.+|+.+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|..++  +.|+|-+.+++.|+.|+.+.+||++.
T Consensus        64 ~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk  143 (825)
T KOG0267|consen   64 TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK  143 (825)
T ss_pred             heeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc
Confidence            3578999999999999999999999999999999999999999998887655  89999999999999999999999997


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                      ..+    .+...+|...+..+.|+|+|++++.+++|..+++||+..|+....|..  |.+.+..+.|+|..-+++.|+.|
T Consensus       144 ~Gc----~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d  217 (825)
T KOG0267|consen  144 KGC----SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSD  217 (825)
T ss_pred             cCc----eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc--ccccccccccCchhhhhccCCCC
Confidence            655    666777999999999999999999999999999999999998887664  44668899999999999999999


Q ss_pred             CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          166 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       166 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      +++++||+++.+.+.........|.+..|+|++..+.+|.
T Consensus       218 ~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  218 RTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             ceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence            9999999999998888877788999999999999999987

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=2.4e-27  Score=187.79  Aligned_cols=210  Identities=16%  Similarity=0.225  Sum_probs=172.3

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCc------------------ceeeeeeeccCCce--EEEcC
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV------------------NACQGILRLRGRPT--VAFDQ   64 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~------------------~~~~~~~~~~~~~~--~~~~~   64 (235)
                      +.+.+...|.+.|+|+.|+|||++||+||.|+.|.||....                  .+....+.+|...+  ++|+|
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence            45666788999999999999999999999999999998762                  13455667777555  99999


Q ss_pred             CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee-------
Q 026679           65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG-------  137 (235)
Q Consensus        65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-------  137 (235)
                      ++.+|++++.|++|.+|+..+.+.    ...+.+|.+.|..+.|.|-|++|++-+.|++|++|+..+....+.       
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF~~----~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~  215 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTFEL----LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE  215 (942)
T ss_pred             CccEEEEecccceEEEEcccccee----eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh
Confidence            999999999999999999999864    677889999999999999999999999999999999654322111       


Q ss_pred             -------------------------------------------eccCCCCCcceeeEEeCC-----Cc------------
Q 026679          138 -------------------------------------------FSLEPSPNTNTEATFTPD-----GQ------------  157 (235)
Q Consensus       138 -------------------------------------------~~~~~~~~~i~~~~~~~~-----~~------------  157 (235)
                                                                 ..+-+|..++.++.|+|.     .+            
T Consensus       216 ~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~  295 (942)
T KOG0973|consen  216 SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC  295 (942)
T ss_pred             CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceE
Confidence                                                       113355678888999872     11            


Q ss_pred             EEEEeCCCCcEEEEEcCCCceeeeecC-CCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          158 YVVSGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      .+|+|+.|++|.||.....+++..... ....|..++|+|||..|.+++  |+|.+..++...+
T Consensus       296 i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  296 IAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             EEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence            578999999999999988887765532 346899999999999999998  9999999976543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.6e-26  Score=154.53  Aligned_cols=204  Identities=16%  Similarity=0.255  Sum_probs=155.8

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc------------------------------------------
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN------------------------------------------   46 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~------------------------------------------   46 (235)
                      .-+.|.+.|.|.+|+|+|+++++|+.|.+|++.-++..                                          
T Consensus        84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            34678999999999999999999999999998754321                                          


Q ss_pred             ----------eeeeeeeccCCceE-EEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeec---CCCcceeEEEEccCC
Q 026679           47 ----------ACQGILRLRGRPTV-AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG---GDTAEVCDIKFSNDG  112 (235)
Q Consensus        47 ----------~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~  112 (235)
                                +..+.+.+|...++ -++.++-++++|+.|.+|++||++-.......-....   -..+.|.+++..|.|
T Consensus       164 ~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg  243 (350)
T KOG0641|consen  164 KIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG  243 (350)
T ss_pred             eEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence                      11111222233333 3456788999999999999999986543111111111   123679999999999


Q ss_pred             CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC----ceeeeecCCCcc
Q 026679          113 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR----NEVACWNGNIGV  188 (235)
Q Consensus       113 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~  188 (235)
                      ++|++|-.|....+||++.++.++.+.  +|...|.++.|+|...|+++++.|..|++-|+...    -++.....|...
T Consensus       244 rll~sg~~dssc~lydirg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk  321 (350)
T KOG0641|consen  244 RLLASGHADSSCMLYDIRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK  321 (350)
T ss_pred             ceeeeccCCCceEEEEeeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc
Confidence            999999999999999999999988665  55567999999999999999999999999998532    223344568888


Q ss_pred             eeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          189 VACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       189 v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      +..+.|+|..-.+++.+  .+..+|-++
T Consensus       322 ~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  322 AIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eEEEEecCccceeeeccCcceEEEeccC
Confidence            89999999887777776  789999765

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=2.2e-27  Score=172.00  Aligned_cols=204  Identities=15%  Similarity=0.248  Sum_probs=161.8

Q ss_pred             ccccceeEEEeecCC-CeeEEEeccceEEEEecCcce----------eeeeeeccCC--ceEEEcCC-CCEEEEEecCCe
Q 026679           12 GHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNA----------CQGILRLRGR--PTVAFDQQ-GLVFAVAMEAGA   77 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~----------~~~~~~~~~~--~~~~~~~~-~~~l~~~~~dg~   77 (235)
                      -|.+.|+.+.+-|.. ..+|+.+..+.+.|||.....          +...+.+|..  ..++|++. .-.+++++.|+.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            488999999999976 567788889999999986432          1124555654  33888884 457999999999


Q ss_pred             EEEEeccCCCCC---CceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679           78 IKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT  153 (235)
Q Consensus        78 v~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~  153 (235)
                      |.+||+......   ......+.+|...|..++|++ +...|++++.|+.+.+||+|++..........|...+.+++|+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            999999876542   234566789999999999999 5667888999999999999964333344556777889999999


Q ss_pred             C-CCcEEEEeCCCCcEEEEEcCCC-ceeeeecCCCcceeEEEeecCCCE-EEEcc--cceEEeeCCC
Q 026679          154 P-DGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAM-FVAAS--SVLSFWIPNP  215 (235)
Q Consensus       154 ~-~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~~i~iw~~~~  215 (235)
                      | ++..||+|+.|++|++||+|+. +++.++.+|...|.++.|+|.... |++++  +.+.|||+..
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            9 5667789999999999999975 467889999999999999997655 45554  7799999964

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=161.96  Aligned_cols=207  Identities=17%  Similarity=0.278  Sum_probs=158.7

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCccee-----e-eeeeccCCceEEEcCCCCEEEEEec-CCeE
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-----Q-GILRLRGRPTVAFDQQGLVFAVAME-AGAI   78 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-----~-~~~~~~~~~~~~~~~~~~~l~~~~~-dg~v   78 (235)
                      .+..|++|.+.|++++|+.||+.|+|++.|++|++|+++....     + ..++......++|.||-+-+++... ...+
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            3567899999999999999999999999999999999976421     1 1222333344999999876665554 5578


Q ss_pred             EEEeccCCCCCCc--eeE------eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceee
Q 026679           79 KLFDSRSYDKGPF--DTF------LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA  150 (235)
Q Consensus        79 ~i~d~~~~~~~~~--~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~  150 (235)
                      ++|.+...+.+..  ...      ....|.-.+..+-....+.++++++.|..|.+|+++ |+.+..+......  -...
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~--n~~a  234 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS--NYDA  234 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc--ccce
Confidence            8887654332211  111      112345566677777788999999999999999998 8877766554433  5568


Q ss_pred             EEeCCCcEEEEeCCCCcEEEEEcC---CC-----ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          151 TFTPDGQYVVSGSGDGTLHAWNIN---TR-----NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       151 ~~~~~~~~l~~~~~dg~i~v~d~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      +.||+|+++++++---.++||..-   .|     ..+..+++|.+.|..++|+++.+.+++.+  |..+|||.+-
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            999999999999998889999863   33     24567899999999999999999999998  8899999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.7e-27  Score=158.25  Aligned_cols=210  Identities=18%  Similarity=0.244  Sum_probs=165.8

Q ss_pred             hhhhhhcccccceeEEEeec--CCCeeEEEeccceEEEEecCcceeee--eeeccC--CceEEEcC--CCCEEEEEecCC
Q 026679            5 RILRYFKGHKERVISLCMSP--VNDSFMSGSLDHSVRIWDLRVNACQG--ILRLRG--RPTVAFDQ--QGLVFAVAMEAG   76 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~--~~~~~~~~--~~~~l~~~~~dg   76 (235)
                      +++.+|.||+++|+.++|..  -|.+||+++.||.|.||.-++++-.+  ....|.  .++++|.|  -|-.|++++.||
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG  126 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG  126 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence            57889999999999999965  68999999999999999988774322  233343  44588877  567899999999


Q ss_pred             eEEEEeccCCCCCCceeEeecCCCcceeEEEEccC---C-----------CeEEEecCCCcEEEEEcCCCceeeeeccCC
Q 026679           77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---G-----------KSMLLTTTNNNIYVLDAYGGEKRCGFSLEP  142 (235)
Q Consensus        77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  142 (235)
                      .|.+.+.+... ..........|.-.|++++|.|.   |           +.|++|+.|..|++|+..+++-.....+..
T Consensus       127 ~vsvl~~~~~g-~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~  205 (299)
T KOG1332|consen  127 KVSVLTYDSSG-GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG  205 (299)
T ss_pred             cEEEEEEcCCC-CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh
Confidence            99999988762 22223445678889999999985   4           569999999999999998886666666788


Q ss_pred             CCCcceeeEEeCCC----cEEEEeCCCCcEEEEEcCCCc--e-eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          143 SPNTNTEATFTPDG----QYVVSGSGDGTLHAWNINTRN--E-VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       143 ~~~~i~~~~~~~~~----~~l~~~~~dg~i~v~d~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      |...++.++|.|.-    .+|+++++||++.||..+...  . ...++.....++.+.|++.|+.|+.++  +.+++|.-
T Consensus       206 H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  206 HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            99999999999963    579999999999999876221  1 122233456899999999999999987  55999976


Q ss_pred             CC
Q 026679          214 NP  215 (235)
Q Consensus       214 ~~  215 (235)
                      +.
T Consensus       286 ~~  287 (299)
T KOG1332|consen  286 NV  287 (299)
T ss_pred             CC
Confidence            53

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.8e-27  Score=178.58  Aligned_cols=208  Identities=15%  Similarity=0.237  Sum_probs=178.6

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc--eeeeeeeccCC--ceEEE-cCCCCEEEEEecCCeEEE
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGR--PTVAF-DQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~--~~~~~-~~~~~~l~~~~~dg~v~i   80 (235)
                      .+..++.|++.|+.+....+++.|+++|.|-+|++|+...+  -++.++..|..  .++++ .++..++++|+-|+.|.+
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl  144 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL  144 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence            47788999999999999999999999999999999999877  57777777774  44777 678899999999999999


Q ss_pred             EeccCCCC------CCceeEeec-CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679           81 FDSRSYDK------GPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT  153 (235)
Q Consensus        81 ~d~~~~~~------~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~  153 (235)
                      ||++++..      .......+. ++..+|++++.++.|..++.|+..+.+++||.++++.+..+.  +|...|..+..+
T Consensus       145 WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr--GHTdNVr~ll~~  222 (735)
T KOG0308|consen  145 WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR--GHTDNVRVLLVN  222 (735)
T ss_pred             EEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee--ccccceEEEEEc
Confidence            99997632      111122233 778899999999999999999999999999999998776555  666779999999


Q ss_pred             CCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          154 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       154 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      +||..+++++.||+|++||+...+++.++..|...|+++..+|+-..+.+|+  +.|..=++..
T Consensus       223 dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  223 DDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             CCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            9999999999999999999999999999999999999999999999999999  5566656655

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.8e-27  Score=182.71  Aligned_cols=198  Identities=19%  Similarity=0.346  Sum_probs=163.8

Q ss_pred             hhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEE
Q 026679            4 NRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIK   79 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~   79 (235)
                      ++++..|..|+..++++.|++.. .+|++||.||+|++||++......++......+  +.|+| .+..|+++...|.++
T Consensus       123 nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lq  202 (839)
T KOG0269|consen  123 NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQ  202 (839)
T ss_pred             chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEE
Confidence            67788999999999999999854 789999999999999999988887777655444  99999 678999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE-
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY-  158 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-  158 (235)
                      +||++....   ...++..|.++|.++.|+|++.+||+|+.|+.|++||+.+++.......+.- .++.++.|-|..++ 
T Consensus       203 lWDlRqp~r---~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-apv~rVkWRP~~~~h  278 (839)
T KOG0269|consen  203 LWDLRQPDR---CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-APVGRVKWRPARSYH  278 (839)
T ss_pred             EeeccCchh---HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec-ceeeeeeeccCccch
Confidence            999998653   4567789999999999999999999999999999999987766555444432 67999999997665 


Q ss_pred             EEEeCC--CCcEEEEEcCCC-ceeeeecCCCcceeEEEeec-CCCEEEEcc
Q 026679          159 VVSGSG--DGTLHAWNINTR-NEVACWNGNIGVVACLKWAP-RRAMFVAAS  205 (235)
Q Consensus       159 l~~~~~--dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  205 (235)
                      |++++.  |-.|+|||++.. -+..++..|...++.++|.. |...+.+++
T Consensus       279 LAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~s  329 (839)
T KOG0269|consen  279 LATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCS  329 (839)
T ss_pred             hhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeec
Confidence            555543  778999999754 34567888999999999976 455666666

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.8e-27  Score=182.67  Aligned_cols=196  Identities=17%  Similarity=0.336  Sum_probs=157.0

Q ss_pred             eeEEEeec-CCCeeEEEeccceEEEEecCc---ceeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEEEEeccCCCCC
Q 026679           17 VISLCMSP-VNDSFMSGSLDHSVRIWDLRV---NACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        17 v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      +..++|.. +.++|||++..|.|.+||+..   .+.+..+..|...+  +.|++ ...+|++|+.||.|++||++..+. 
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-  168 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-  168 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-
Confidence            34567764 357899999999999999976   45556677776544  89988 567899999999999999998775 


Q ss_pred             CceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679           90 PFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL  168 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  168 (235)
                         .....+....|+.++|+| .+..++++.+.|.+.+||+|.... ..+++..|.++|.++.|+|++.+||+|+.|+.|
T Consensus       169 ---~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v  244 (839)
T KOG0269|consen  169 ---KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV  244 (839)
T ss_pred             ---cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-HHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence               444556778899999999 678899999999999999997653 344667788999999999999999999999999


Q ss_pred             EEEEcCCCce--eeeecCCCcceeEEEeecCCCE-EEEcc----cceEEeeCCCCCC
Q 026679          169 HAWNINTRNE--VACWNGNIGVVACLKWAPRRAM-FVAAS----SVLSFWIPNPSSN  218 (235)
Q Consensus       169 ~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~-l~~~~----~~i~iw~~~~~~~  218 (235)
                      +|||..+.+.  +.++. ...++.++.|-|...+ |++++    -.|+|||+...-+
T Consensus       245 kiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI  300 (839)
T KOG0269|consen  245 KIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI  300 (839)
T ss_pred             EEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence            9999976554  33333 3468999999998765 45554    4499999976544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.9e-26  Score=178.96  Aligned_cols=207  Identities=19%  Similarity=0.347  Sum_probs=174.4

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      .+|++...+.+|.+.|.++...+  ..+++|+.|.+|++|+++++..+..+.+|...+-+..-++.++++|+.|++|++|
T Consensus       279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW  356 (537)
T KOG0274|consen  279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVW  356 (537)
T ss_pred             CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEE
Confidence            57899999999999999998764  6788899999999999999999999998887776666669999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC-ceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      |+.+++.    ...+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++..+.  .|...+..+.  ..+++|+
T Consensus       357 ~~~~~~c----l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~--~h~~~v~~l~--~~~~~Lv  427 (537)
T KOG0274|consen  357 DPRTGKC----LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ--GHTSLVSSLL--LRDNFLV  427 (537)
T ss_pred             Ehhhcee----eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc--CCcccccccc--cccceeE
Confidence            9998776    7788899999999988765 78999999999999999999 7666554  4444454444  4678999


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecC-CCcceeEEEeecCCCEEEEcc-cceEEeeCCCCCCCC
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNST  220 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~~~  220 (235)
                      +++.|+.|++||..+++++..+.+ |.+.|..+++. +...++++. +.+++||+++.+...
T Consensus       428 s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  428 SSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             eccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhh
Confidence            999999999999999999999998 66888888876 334444444 899999998765543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=1.6e-26  Score=164.43  Aligned_cols=206  Identities=17%  Similarity=0.243  Sum_probs=160.2

Q ss_pred             cccccceeEEEeecCC--CeeEEEeccceEEEEecCc----------------ceeeeeeeccCCc--eEEEcC-CCCEE
Q 026679           11 KGHKERVISLCMSPVN--DSFMSGSLDHSVRIWDLRV----------------NACQGILRLRGRP--TVAFDQ-QGLVF   69 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~----------------~~~~~~~~~~~~~--~~~~~~-~~~~l   69 (235)
                      -+|.+.++.+..++-+  .+.++-+..|.|+|||+..                .+++.++..|...  .++|+| ....|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3577788887777754  4566777889999999752                2344555555533  389999 33458


Q ss_pred             EEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679           70 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT  148 (235)
Q Consensus        70 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~  148 (235)
                      ++|.--+.|++|...++.. ......+.+|...|-.++|+|. ...|++++.||+|++||+|.+.....+....|.+.|+
T Consensus       228 lsGDc~~~I~lw~~~~g~W-~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSW-KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             ccCccccceEeeeeccCce-eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            8888889999999988553 3334455679999999999995 4578889999999999999985544445577888899


Q ss_pred             eeEEeCCCcEEEEeCCCCcEEEEEcCC---CceeeeecCCCcceeEEEeecCCC-EEEEcc--cceEEeeCCCCC
Q 026679          149 EATFTPDGQYVVSGSGDGTLHAWNINT---RNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       149 ~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~~i~iw~~~~~~  217 (235)
                      .+.|+..-.+||+|+.||+++|||+++   ++++.+++.|..+|+++.|+|... .|++++  ..+.+||+....
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence            999999888999999999999999985   677899999999999999999543 333333  669999997543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.4e-27  Score=163.01  Aligned_cols=223  Identities=21%  Similarity=0.338  Sum_probs=183.5

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecCCeEEEEe
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      ++++.|.||.+.|+.++.......+.+++.|.+.+||.++++.++..+.+|...  ++.|++.+.++++++.|++-.||.
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            578899999999999998877788999999999999999999999999998754  599999999999999999999996


Q ss_pred             c------cCCC------------------------------CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEE
Q 026679           83 S------RSYD------------------------------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV  126 (235)
Q Consensus        83 ~------~~~~------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  126 (235)
                      .      ....                              ........+.+|...|.+..|-..|+.+++++.|.+..+
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl  298 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL  298 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence            2      1100                              001123456688899999999999999999999999999


Q ss_pred             EEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          127 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       127 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      ||+.+++.+..+..+.+  ..+.++-+|..+++++.+.|.+.++||.+. -..+..|++|...|++..|..+.+. ++|+
T Consensus       299 wDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~v-VSgS  375 (481)
T KOG0300|consen  299 WDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRV-VSGS  375 (481)
T ss_pred             eeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCce-eecC
Confidence            99999999987776654  488899999999999999999999999984 3456788999999999999987655 4555


Q ss_pred             --cceEEeeCCCC--CCCCCCCCCCCCCc
Q 026679          206 --SVLSFWIPNPS--SNSTDESTDPQATV  230 (235)
Q Consensus       206 --~~i~iw~~~~~--~~~~~~~~~~~~~i  230 (235)
                        .++++||++..  .+.++....|.+++
T Consensus       376 DDrTvKvWdLrNMRsplATIRtdS~~NRv  404 (481)
T KOG0300|consen  376 DDRTVKVWDLRNMRSPLATIRTDSPANRV  404 (481)
T ss_pred             CCceEEEeeeccccCcceeeecCCcccee
Confidence              78999999753  33444444444443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=3.9e-28  Score=185.10  Aligned_cols=203  Identities=20%  Similarity=0.357  Sum_probs=182.5

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      +.+-.|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|...+  +.|+++..++++|..+|+|++||+..
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence            4556799999999987678899999999999999998887777888887655  99999999999999999999999997


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                      ...    ...+.+|...+.++.|+|-+.+.+.++.|+.+.+||.+...+.+.+..  |...+..+.|+|+|++++.+++|
T Consensus       102 Ak~----vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s--~~~vv~~l~lsP~Gr~v~~g~ed  175 (825)
T KOG0267|consen  102 AKI----VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS--HTRVVDVLRLSPDGRWVASGGED  175 (825)
T ss_pred             hhh----hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC--CcceeEEEeecCCCceeeccCCc
Confidence            664    557889999999999999999999999999999999998777776654  66778999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          166 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       166 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      ..+++||+..|+....|+.|.+.+..+.|+|..-+++.|+  +++++||+++-
T Consensus       176 ~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  176 NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             ceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee
Confidence            9999999999999999999999999999999999999998  78999999853

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.2e-26  Score=162.79  Aligned_cols=209  Identities=21%  Similarity=0.349  Sum_probs=182.9

Q ss_pred             Cchhhhhhhhc-ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCe
Q 026679            1 MYDNRILRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGA   77 (235)
Q Consensus         1 l~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~   77 (235)
                      +++|++++.|. +|+..|+|+.|+.|+..+++++.|.++++--++.|++++.+++|...+  ..|.++|..+++++.||+
T Consensus       292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt  371 (508)
T KOG0275|consen  292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT  371 (508)
T ss_pred             EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence            46899999998 899999999999999999999999999999999999999999998655  899999999999999999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccC-CCCCcceeeEEeCC
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE-PSPNTNTEATFTPD  155 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~  155 (235)
                      |++|+..+.++  ...+...+...+|.++..-| +...++++...+++++.++ .|+.+..+... ...+...+...+|.
T Consensus       372 vkvW~~KtteC--~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpk  448 (508)
T KOG0275|consen  372 VKVWHGKTTEC--LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPK  448 (508)
T ss_pred             EEEecCcchhh--hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCC
Confidence            99999988765  33445556677888888777 5678999999999999997 46666666543 23355677889999


Q ss_pred             CcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679          156 GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       156 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      |.++++.++|+.++.|...+|+...++..|+..+..++-+|..+.+++-+  |.+++|.
T Consensus       449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            99999999999999999999999999999999999999999999999988  7799995

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.1e-25  Score=155.95  Aligned_cols=202  Identities=17%  Similarity=0.235  Sum_probs=154.9

Q ss_pred             ccccceeEEEeec-CCCeeEEEeccceEEEEecCc-ceeee-eeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679           12 GHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRV-NACQG-ILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus        12 ~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~-~~~~~-~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~   86 (235)
                      ..++.|.+++||| ...+++++|+|++||+|+++. +.... ....+..++  ++|+.+|..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            3567899999999 456677999999999999976 33332 233344444  899999999999999999999999997


Q ss_pred             CCCCceeEeecCCCcceeEEEEccCCC--eEEEecCCCcEEEEEcCCCceeeeeccCCC---------------------
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSNDGK--SMLLTTTNNNIYVLDAYGGEKRCGFSLEPS---------------------  143 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---------------------  143 (235)
                      +     ......|..+|..+.|-+...  .|++|+.|++|+.||.|...++..+.++..                     
T Consensus       105 Q-----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~  179 (347)
T KOG0647|consen  105 Q-----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIA  179 (347)
T ss_pred             C-----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEE
Confidence            6     466778999999999987655  799999999999999998766554433211                     


Q ss_pred             ------------------CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC--ceeeeecCCC---------cceeEEEe
Q 026679          144 ------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR--NEVACWNGNI---------GVVACLKW  194 (235)
Q Consensus       144 ------------------~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~---------~~v~~~~~  194 (235)
                                        +-.+++++..++....+.|+-+|.+.+..+..+  +.-..++.|.         ..|.+|+|
T Consensus       180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F  259 (347)
T KOG0647|consen  180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF  259 (347)
T ss_pred             EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence                              134567777777777788888888888887765  3344555554         25788999


Q ss_pred             ecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          195 APRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       195 ~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      +|.-..|++++  |.+.+||-+....
T Consensus       260 hP~hgtlvTaGsDGtf~FWDkdar~k  285 (347)
T KOG0647|consen  260 HPVHGTLVTAGSDGTFSFWDKDARTK  285 (347)
T ss_pred             ecccceEEEecCCceEEEecchhhhh
Confidence            99877777776  8899999875443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-25  Score=163.21  Aligned_cols=201  Identities=12%  Similarity=0.253  Sum_probs=171.6

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecCCeEEEEeccCC-----
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSY-----   86 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-----   86 (235)
                      .++|.+++-+|+|.+|+.|...|.+++|.+.+|..+..+..|-.  .++.|+-||.+|++|+.||.|.+|++...     
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            47899999999999999998999999999999999999888764  45999999999999999999999987431     


Q ss_pred             CCCCceeEeecCCCcceeEEEEccC--CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                      ...+.....+..|.-+|+++...+.  ..++++++.|.++++||+..+..+..+..+   ..+.+++.+|-++.+++|++
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp---~si~av~lDpae~~~yiGt~  237 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP---SSIKAVALDPAERVVYIGTE  237 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC---CcceeEEEcccccEEEecCC
Confidence            1123346677789999999988764  357999999999999999999988877665   55899999999999999999


Q ss_pred             CCcEEEEEcCCC----------------ceeeeecCCCc--ceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          165 DGTLHAWNINTR----------------NEVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       165 dg~i~v~d~~~~----------------~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +|.|.+.++...                ..+..+.+|.+  .|+|++.+-||..|++|+  |.+.|||+.+.+
T Consensus       238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence            999999887432                23455678877  999999999999999998  889999997654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.6e-26  Score=163.71  Aligned_cols=207  Identities=16%  Similarity=0.269  Sum_probs=164.7

Q ss_pred             hhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            6 ILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      ++..|.||.+.|.|++=+|.. ..+++|+.||.|++||+....+...++.|...+  +++..  ..+++++.|.+|+.|-
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence            456789999999999999976 779999999999999999999999999998666  66554  6788888888888887


Q ss_pred             ccCCCC------------------------C----------CceeEeecCCCcceeEEEEccCCC-eEEEecCCCcEEEE
Q 026679           83 SRSYDK------------------------G----------PFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVL  127 (235)
Q Consensus        83 ~~~~~~------------------------~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~  127 (235)
                      +.....                        +          ......+.-....+.++.|+|... .|+++..|+.|.+|
T Consensus       136 ~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy  215 (433)
T KOG0268|consen  136 IDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY  215 (433)
T ss_pred             ccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence            433100                        0          000111112234577888888544 56666699999999


Q ss_pred             EcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC-ceeeeecCCCcceeEEEeecCCCEEEEcc-
Q 026679          128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS-  205 (235)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  205 (235)
                      |++.+++++...+...   -+.++|+|++--+.+|++|..++.||++.. +++....+|.+.|.+++|+|.|+-+++|+ 
T Consensus       216 D~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy  292 (433)
T KOG0268|consen  216 DLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY  292 (433)
T ss_pred             ecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence            9999999887776644   355899998888899999999999999864 56778889999999999999999999999 


Q ss_pred             -cceEEeeCCCCC
Q 026679          206 -SVLSFWIPNPSS  217 (235)
Q Consensus       206 -~~i~iw~~~~~~  217 (235)
                       .+|+||..+.+.
T Consensus       293 DksIRIf~~~~~~  305 (433)
T KOG0268|consen  293 DKSIRIFPVNHGH  305 (433)
T ss_pred             cceEEEeecCCCc
Confidence             889999987553

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=8.4e-26  Score=164.24  Aligned_cols=198  Identities=16%  Similarity=0.256  Sum_probs=168.3

Q ss_pred             cccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679           11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDK   88 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~   88 (235)
                      ++|...|.+++.++||++|++|+.|..|.||+.++.+.++.+.+|...+  ++|-.....+++++.|+.+++|++.....
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            4899999999999999999999999999999999999999999988666  78888888899999999999999987664


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL  168 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  168 (235)
                          ...+.+|+..|..+....-++.+-+|+.|+++++|++.....+ .+  .++.+.+.|++|-.+ ..+++|+.+|.|
T Consensus       279 ----vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-if--rg~~~sidcv~~In~-~HfvsGSdnG~I  350 (479)
T KOG0299|consen  279 ----VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IF--RGGEGSIDCVAFIND-EHFVSGSDNGSI  350 (479)
T ss_pred             ----HHHHhCCccceeeechhcccceEEeccccceeEEEecccccee-ee--eCCCCCeeeEEEecc-cceeeccCCceE
Confidence                5667899999999988888887777889999999999544332 23  344567899998755 578899999999


Q ss_pred             EEEEcCCCceeeeec-CC-----------CcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          169 HAWNINTRNEVACWN-GN-----------IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       169 ~v~d~~~~~~~~~~~-~~-----------~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      .+|++...+++++.. .|           ...|++++..|...++++|+  |.+++|.++.+
T Consensus       351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            999999888877653 22           12789999999999999998  88999999766

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=5.5e-26  Score=163.27  Aligned_cols=211  Identities=16%  Similarity=0.180  Sum_probs=174.0

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      .++.+|.|-.++|+++.|.+++.++++++.|+.+++|++...+...++.+|...+  +.|......+++|+.|.++++||
T Consensus       210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WD  289 (459)
T KOG0288|consen  210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWD  289 (459)
T ss_pred             hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhh
Confidence            4677888888999999999999999999999999999999999999999998766  55555555599999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      +.......     ..-..+.+..+..+  ...++++..|+.|++||.++..+.......   +.|+++..++++..|+++
T Consensus       290 l~k~~C~k-----t~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g---g~vtSl~ls~~g~~lLss  359 (459)
T KOG0288|consen  290 LQKAYCSK-----TVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG---GRVTSLDLSMDGLELLSS  359 (459)
T ss_pred             hhhhheec-----cccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC---cceeeEeeccCCeEEeee
Confidence            98754311     11122455566655  456788889999999999999988877765   369999999999999999


Q ss_pred             CCCCcEEEEEcCCCceeeeecCC----CcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCCCCCC
Q 026679          163 SGDGTLHAWNINTRNEVACWNGN----IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDESTD  225 (235)
Q Consensus       163 ~~dg~i~v~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~~~~~  225 (235)
                      +.|..+.+.|+++.+....+...    ....+.+.|+|++.|+++|+  |.++||++.++++....+..
T Consensus       360 sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s  428 (459)
T KOG0288|consen  360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS  428 (459)
T ss_pred             cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC
Confidence            99999999999998887777532    23588999999999999998  88999999988876655433

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8.3e-26  Score=152.27  Aligned_cols=202  Identities=16%  Similarity=0.282  Sum_probs=165.7

Q ss_pred             cccccceeEEEeecCCCeeEEEeccceEEEEecCcc---eeeeeeeccCCce--EEEcC--CCCEEEEEecCCeEEEEec
Q 026679           11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN---ACQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~v~i~d~   83 (235)
                      ..|++.|..+...--|++|||++.|++|+|+..+.+   +.+..+.+|..++  ++|..  -|.+|++++.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            468999998888888999999999999999999765   4677888999887  66654  8999999999999999998


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccC--CCeEEEecCCCcEEEEEcCCC-ceeeeeccCCCCCcceeeEEeCC---C-
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPD---G-  156 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~i~~~~~~~~---~-  156 (235)
                      .++.-..  ......|...|++++|.|.  |-.|++++.||.|.+.+.+.. ..........|+-.+++++|.|.   | 
T Consensus        88 ~~g~w~k--~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~  165 (299)
T KOG1332|consen   88 ENGRWTK--AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS  165 (299)
T ss_pred             CCCchhh--hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence            8764322  3445678899999999995  567899999999999998765 33333334567777999999986   4 


Q ss_pred             ----------cEEEEeCCCCcEEEEEcCCCc--eeeeecCCCcceeEEEeecCC----CEEEEcc--cceEEeeCC
Q 026679          157 ----------QYVVSGSGDGTLHAWNINTRN--EVACWNGNIGVVACLKWAPRR----AMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       157 ----------~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~--~~i~iw~~~  214 (235)
                                +.|++|+.|..|+||+..+++  ....+.+|...|+.++|.|.-    .+|++++  +++.||..+
T Consensus       166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence                      569999999999999998753  345588999999999999953    5788888  889999876

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.1e-25  Score=157.42  Aligned_cols=217  Identities=15%  Similarity=0.167  Sum_probs=175.2

Q ss_pred             CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC------c-----------------------------
Q 026679            1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR------V-----------------------------   45 (235)
Q Consensus         1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~------~-----------------------------   45 (235)
                      |++|+++..+.||.+.|++++|++.+.++++++.|++-.||...      .                             
T Consensus       177 ~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s  256 (481)
T KOG0300|consen  177 LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS  256 (481)
T ss_pred             eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence            57899999999999999999999999999999999999999721      0                             


Q ss_pred             -c----eeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEe
Q 026679           46 -N----ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT  118 (235)
Q Consensus        46 -~----~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  118 (235)
                       +    .++..+.+|...+  ..|-..|+.+++++.|.+-.+||+++++.    ...+.+|....+.++-+|..+++++.
T Consensus       257 D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~----v~~LtGHd~ELtHcstHptQrLVvTs  332 (481)
T KOG0300|consen  257 DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV----VNILTGHDSELTHCSTHPTQRLVVTS  332 (481)
T ss_pred             CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCce----eccccCcchhccccccCCcceEEEEe
Confidence             0    0112223333333  44666889999999999999999999886    67788999999999999999999999


Q ss_pred             cCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCce-eeeecCCCcceeEEEeecC
Q 026679          119 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPR  197 (235)
Q Consensus       119 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~  197 (235)
                      +.|.+.++||++.. ....-.+.+|...|+++.|..+. .+++|+.|.+|+|||+++.+. +.++. ..+++..++.+..
T Consensus       333 SrDtTFRLWDFRea-I~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g  409 (481)
T KOG0300|consen  333 SRDTTFRLWDFREA-IQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKG  409 (481)
T ss_pred             ccCceeEeccchhh-cceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecC
Confidence            99999999999843 22333445677789999998765 578999999999999998654 55554 5678999999988


Q ss_pred             CCEEEEcc--cceEEeeCCCCCCCCCCCC
Q 026679          198 RAMFVAAS--SVLSFWIPNPSSNSTDEST  224 (235)
Q Consensus       198 ~~~l~~~~--~~i~iw~~~~~~~~~~~~~  224 (235)
                      +..|+.--  ..+++||+++..+..++-.
T Consensus       410 ~~iIAiPhDNRqvRlfDlnG~RlaRlPrt  438 (481)
T KOG0300|consen  410 HPIIAIPHDNRQVRLFDLNGNRLARLPRT  438 (481)
T ss_pred             CceEEeccCCceEEEEecCCCccccCCcc
Confidence            87887775  6699999999888777643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.3e-25  Score=161.42  Aligned_cols=208  Identities=16%  Similarity=0.179  Sum_probs=164.8

Q ss_pred             CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC---------cceeeeeeeccCCce--EEE--cCCCC
Q 026679            1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR---------VNACQGILRLRGRPT--VAF--DQQGL   67 (235)
Q Consensus         1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~---------~~~~~~~~~~~~~~~--~~~--~~~~~   67 (235)
                      |.+|+++..+.+|=..|+|+.|+.||.+|+|||.||.|.+|.+.         +.++...+..|..++  +..  .+...
T Consensus       110 lssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~  189 (476)
T KOG0646|consen  110 LSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNA  189 (476)
T ss_pred             eccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccc
Confidence            46899999999999999999999999999999999999999863         235667777777666  333  33457


Q ss_pred             EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc--------------
Q 026679           68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE--------------  133 (235)
Q Consensus        68 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--------------  133 (235)
                      ++++++.|.++++||+..+..     ......+..+.+++.+|-++.+++|+.+|.|.+.++....              
T Consensus       190 rl~TaS~D~t~k~wdlS~g~L-----Llti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~  264 (476)
T KOG0646|consen  190 RLYTASEDRTIKLWDLSLGVL-----LLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE  264 (476)
T ss_pred             eEEEecCCceEEEEEecccee-----eEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccc
Confidence            899999999999999998753     2222345789999999999999999999999998875432              


Q ss_pred             --eeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cce
Q 026679          134 --KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVL  208 (235)
Q Consensus       134 --~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i  208 (235)
                        ....+..+.....|+|++++-||.+|++|+.||.++|||+.+.++++++....++|+.+.+.|-.+-.+.+.   ..+
T Consensus       265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~  344 (476)
T KOG0646|consen  265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSL  344 (476)
T ss_pred             cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccC
Confidence              122233333334899999999999999999999999999999999998886778999999977654444432   234


Q ss_pred             EEeeC
Q 026679          209 SFWIP  213 (235)
Q Consensus       209 ~iw~~  213 (235)
                      -.|++
T Consensus       345 ~~~~l  349 (476)
T KOG0646|consen  345 PNPHL  349 (476)
T ss_pred             CchHh
Confidence            44444

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.3e-26  Score=171.76  Aligned_cols=203  Identities=15%  Similarity=0.266  Sum_probs=164.7

Q ss_pred             ccccee---EEEeec-CCCeeEEEeccceEEEEecCcce------eeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679           13 HKERVI---SLCMSP-VNDSFMSGSLDHSVRIWDLRVNA------CQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus        13 h~~~v~---~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~------~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      |...|.   .+..+. .+++|+|||+||.|++|++....      ....++.|..-+  ++...+++.|++++.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            444454   445544 45779999999999999986432      245556665443  677778899999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEE-ccCCCeEEEecCCCcEEEEEcCCCce--eeee------ccC-CCCCcceee
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKF-SNDGKSMLLTTTNNNIYVLDAYGGEK--RCGF------SLE-PSPNTNTEA  150 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~------~~~-~~~~~i~~~  150 (235)
                      |+.....  ......+..|...|.|+++ .++...+++|+-|+.|.+||+.++..  +..+      .+. ++...|.++
T Consensus       100 W~~~~~~--~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL  177 (735)
T KOG0308|consen  100 WNAHKDN--TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL  177 (735)
T ss_pred             eecccCc--chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence            9988754  2335567789999999999 78888999999999999999997732  2211      122 556789999


Q ss_pred             EEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       151 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +.++.|..+++|+..+.|++||.++.+.+..+.+|...|..+..++||..+++++  ++|++||+....
T Consensus       178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr  246 (735)
T KOG0308|consen  178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR  246 (735)
T ss_pred             ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence            9999999999999999999999999999999999999999999999999999998  889999997654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2.5e-25  Score=176.47  Aligned_cols=202  Identities=16%  Similarity=0.252  Sum_probs=161.6

Q ss_pred             cccceeEEEeecCCCeeEEEe--ccceEEEEecCc------------ceeeeeeeccC--CceEEEcCCCCEEEEEecCC
Q 026679           13 HKERVISLCMSPVNDSFMSGS--LDHSVRIWDLRV------------NACQGILRLRG--RPTVAFDQQGLVFAVAMEAG   76 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~--~d~~i~vwd~~~------------~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg   76 (235)
                      +...|.++..+|++..++||+  .|+.++||+.+.            .+.+.....|.  +.|+.|+|||++||+|++|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            456799999999999999999  899999998642            11222333333  45688999999999999999


Q ss_pred             eEEEEeccCCC----------CC----CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC
Q 026679           77 AIKLFDSRSYD----------KG----PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP  142 (235)
Q Consensus        77 ~v~i~d~~~~~----------~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  142 (235)
                      .|.+|+.....          ..    ......+.+|...|..++|+|++.+|++++.|++|.+|+.++.+....+.  .
T Consensus        92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~--~  169 (942)
T KOG0973|consen   92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR--G  169 (942)
T ss_pred             eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee--c
Confidence            99999987300          00    01245567899999999999999999999999999999999997776655  4


Q ss_pred             CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC------CcceeEEEeecCCCEEEEcc------cceEE
Q 026679          143 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN------IGVVACLKWAPRRAMFVAAS------SVLSF  210 (235)
Q Consensus       143 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~------~~i~i  210 (235)
                      |.+.|-.+.|.|-|+|||+-+.|++|+||++.+....+.+..+      ...+..+.|+|||.+|++..      ..+.|
T Consensus       170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I  249 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI  249 (942)
T ss_pred             ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence            5567999999999999999999999999998877676666544      33678999999999999984      34677


Q ss_pred             eeCCCC
Q 026679          211 WIPNPS  216 (235)
Q Consensus       211 w~~~~~  216 (235)
                      .+-++.
T Consensus       250 ieR~tW  255 (942)
T KOG0973|consen  250 IERGTW  255 (942)
T ss_pred             EecCCc
Confidence            665443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-24  Score=169.89  Aligned_cols=201  Identities=14%  Similarity=0.247  Sum_probs=164.3

Q ss_pred             cccccceeEEEeecCCCeeEEEeccceEEEEecCcc-----------eeee-------------------eeecc-----
Q 026679           11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-----------ACQG-------------------ILRLR-----   55 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-----------~~~~-------------------~~~~~-----   55 (235)
                      .+|+...+.++|.|+|++|++++.||.|++|+....           ..+.                   .++.+     
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence            368889999999999999999999999999986432           1111                   11111     


Q ss_pred             --------CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEE
Q 026679           56 --------GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL  127 (235)
Q Consensus        56 --------~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  127 (235)
                              ...+++++.+|++++.|+.|-.|++.+......    ...+.+|..+|.++.|+|++++|++.+.||.|++|
T Consensus        90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~----~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ----EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch----heeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence                    123478888999999999999999999887665    67788999999999999999999999999999999


Q ss_pred             EcCCCceeeeeccCC------CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec--CCCcceeEEEeecCCC
Q 026679          128 DAYGGEKRCGFSLEP------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRA  199 (235)
Q Consensus       128 d~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~  199 (235)
                      |+.++.....+..-.      ....+..++|+|+|..++....|+.|.+|+..+++....+.  .+...+..++|+|+|.
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~  245 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK  245 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence            999887655443211      12456779999998888888899999999999998887775  3445599999999999


Q ss_pred             EEEEcc--cceEEeeCCC
Q 026679          200 MFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       200 ~l~~~~--~~i~iw~~~~  215 (235)
                      |||+++  |.|.|||.++
T Consensus       246 YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  246 YIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEeeeccCCcEEEEeccc
Confidence            999998  8899999985

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=7.4e-25  Score=165.09  Aligned_cols=191  Identities=17%  Similarity=0.344  Sum_probs=160.9

Q ss_pred             EEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc--CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEee
Q 026679           19 SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV   96 (235)
Q Consensus        19 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~   96 (235)
                      -+.|+. .+.|+.|. ...|++|+..++........+  ...++.|+++|.+|++|..+|.|.|||..+.+.    ...+
T Consensus       182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~----~~~~  255 (484)
T KOG0305|consen  182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK----TRTL  255 (484)
T ss_pred             Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc----cccc
Confidence            356773 44566654 457999999999877666663  345599999999999999999999999988665    4445


Q ss_pred             cC-CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679           97 GG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT  175 (235)
Q Consensus        97 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  175 (235)
                      .. |...|.+++|.  +..+.+|+.++.|..+|++..+.... .+..|...|..+.|++|+++||+|+.|+.+.|||...
T Consensus       256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~  332 (484)
T KOG0305|consen  256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS  332 (484)
T ss_pred             cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence            55 88999999998  56789999999999999999887666 4677778899999999999999999999999999988


Q ss_pred             CceeeeecCCCcceeEEEeec-CCCEEEEcc----cceEEeeCCCCCC
Q 026679          176 RNEVACWNGNIGVVACLKWAP-RRAMFVAAS----SVLSFWIPNPSSN  218 (235)
Q Consensus       176 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~~i~iw~~~~~~~  218 (235)
                      .+++..+..|.+.|..++|+| ...+||+|+    +.|++|+..++..
T Consensus       333 ~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~  380 (484)
T KOG0305|consen  333 PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR  380 (484)
T ss_pred             ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence            899999999999999999999 567888887    5599999986543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1e-23  Score=141.22  Aligned_cols=206  Identities=12%  Similarity=0.164  Sum_probs=154.8

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecC------cce-----e-ee---eeeccC--CceEEEcCCCCEEEEEecC
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLR------VNA-----C-QG---ILRLRG--RPTVAFDQQGLVFAVAMEA   75 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~------~~~-----~-~~---~~~~~~--~~~~~~~~~~~~l~~~~~d   75 (235)
                      .+..|.+++|+|.|.+.+.|+...+.+|-...      .+.     + ..   .-+.|.  +.+.+|+|+|+++++|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            35789999999999999999999999987432      111     1 11   112222  3358999999999999999


Q ss_pred             CeEEEEeccCCCCCCc-eeEeecCCCcceeEEEEcc--------------------------------------------
Q 026679           76 GAIKLFDSRSYDKGPF-DTFLVGGDTAEVCDIKFSN--------------------------------------------  110 (235)
Q Consensus        76 g~v~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~~--------------------------------------------  110 (235)
                      .+|++...+....... ....+..|.+.|..++|..                                            
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly  190 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY  190 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence            9999876554222110 1122233444444444432                                            


Q ss_pred             --CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC-----CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec
Q 026679          111 --DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-----NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN  183 (235)
Q Consensus       111 --~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  183 (235)
                        ++-.+++|+.|.+|++||++-...+..+....+.     ..|.+++..|.|++|++|-.|....+||++.++.++.+.
T Consensus       191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~  270 (350)
T KOG0641|consen  191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH  270 (350)
T ss_pred             EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC
Confidence              3346778888999999999988777665433332     568899999999999999999999999999999999999


Q ss_pred             CCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          184 GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       184 ~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      .|...|.++.|+|.-.|+++++  ..|++=|+.+...
T Consensus       271 phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla  307 (350)
T KOG0641|consen  271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA  307 (350)
T ss_pred             CCccceeEEEeCCCceEEEEecccceEEEeecccchh
Confidence            9999999999999999999998  6699988876543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.3e-24  Score=150.93  Aligned_cols=194  Identities=16%  Similarity=0.242  Sum_probs=157.5

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK   88 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~   88 (235)
                      .+..|..+|.|+.+++....+++||+|++|++||.+.......+.... .+.+.+-.++.|++|+.+..+.+||+++...
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEeccCCEEEEeecCceEEEEEcccccc
Confidence            456799999999999988899999999999999998755555554443 5677788899999999999999999998775


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC----ceeeeeccCCC-------CCcceeeEEeCCCc
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG----EKRCGFSLEPS-------PNTNTEATFTPDGQ  157 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~-------~~~i~~~~~~~~~~  157 (235)
                      ..  ......-...++++++.|++.-+++++-||+|.+=.+...    +....|+.|..       -.+|++++|+|--.
T Consensus       168 ~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~  245 (323)
T KOG1036|consen  168 PF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG  245 (323)
T ss_pred             hh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence            22  2222334467899999998888999999999988666554    22222332221       15799999999999


Q ss_pred             EEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          158 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      .|++|+.||.|.+||+.+.+.+.++......|..++|+.+|..||.++
T Consensus       246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            999999999999999999999999987778899999999999999986

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.93  E-value=3e-24  Score=153.80  Aligned_cols=215  Identities=18%  Similarity=0.249  Sum_probs=169.4

Q ss_pred             hhcccccceeEEEeecC-CCeeEEEeccceEEEEecCcc-------eeeeeeeccCCce--EEEcCC-CCEEEEEecCCe
Q 026679            9 YFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVN-------ACQGILRLRGRPT--VAFDQQ-GLVFAVAMEAGA   77 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~dg~   77 (235)
                      .+.||+++|..++|+|- ...||+||.|.+|.||++..+       +++..+.+|...+  ++|+|. .+.|++++.|..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            35799999999999994 477999999999999998654       3466677887666  999994 578999999999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      |.+|++.+++.    ...+. |...|.++.|+.||.+|++.+.|..|++||.++++.+..-..+... ....+.|-.+|.
T Consensus       156 v~iWnv~tgea----li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~-k~~Raifl~~g~  229 (472)
T KOG0303|consen  156 VSIWNVGTGEA----LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA-KPARAIFLASGK  229 (472)
T ss_pred             EEEEeccCCce----eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC-CcceeEEeccCc
Confidence            99999999875    44444 9999999999999999999999999999999999998877555442 345567888888


Q ss_pred             EEEEeC---CCCcEEEEEcCCCcee---eeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCC-----CCCCCC
Q 026679          158 YVVSGS---GDGTLHAWNINTRNEV---ACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS-----NSTDES  223 (235)
Q Consensus       158 ~l~~~~---~dg~i~v~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~-----~~~~~~  223 (235)
                      .+.+|.   .+..+.+||..+.+.-   .++. ..+.|.---|.||...+..++   +.|+.|.+....     +.++.+
T Consensus       230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S  308 (472)
T KOG0303|consen  230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS  308 (472)
T ss_pred             eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence            665553   3678999998765432   3333 344566667888988888876   669999997655     556777


Q ss_pred             CCCCCCc
Q 026679          224 TDPQATV  230 (235)
Q Consensus       224 ~~~~~~i  230 (235)
                      .+|+..+
T Consensus       309 ~epQRG~  315 (472)
T KOG0303|consen  309 KEPQRGM  315 (472)
T ss_pred             CCccccc
Confidence            7777654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.1e-24  Score=149.53  Aligned_cols=196  Identities=15%  Similarity=0.251  Sum_probs=154.0

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCC--EEEEEecCCeEEEEecc
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGL--VFAVAMEAGAIKLFDSR   84 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~--~l~~~~~dg~v~i~d~~   84 (235)
                      ....|.++|.+++|+.+|..+++|+.|+.+++||+.+++. ..+..|..++  +.|-+...  .|++|+.|.+++.||.+
T Consensus        67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R  145 (347)
T KOG0647|consen   67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR  145 (347)
T ss_pred             hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence            3456899999999999999999999999999999999954 4455555444  77776554  89999999999999998


Q ss_pred             CCCCCC--------------------------ceeEeec-----------CCCcceeEEEEccCCCeEEEecCCCcEEEE
Q 026679           85 SYDKGP--------------------------FDTFLVG-----------GDTAEVCDIKFSNDGKSMLLTTTNNNIYVL  127 (235)
Q Consensus        85 ~~~~~~--------------------------~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  127 (235)
                      ......                          +..+.+.           ...-.+++++..+|.+..+.|+-+|.+.+.
T Consensus       146 ~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq  225 (347)
T KOG0647|consen  146 SSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQ  225 (347)
T ss_pred             CCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEE
Confidence            643210                          0011110           112457899999988888999999999999


Q ss_pred             EcCCCceeee--eccCCC-------CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCC
Q 026679          128 DAYGGEKRCG--FSLEPS-------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR  198 (235)
Q Consensus       128 d~~~~~~~~~--~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~  198 (235)
                      .+..+.....  ++.|..       -..|++++|+|.-..|++++.||++.+||-.....+.+.+.|..+|++..|+.+|
T Consensus       226 ~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G  305 (347)
T KOG0647|consen  226 YIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNG  305 (347)
T ss_pred             ecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCC
Confidence            8887633333  333321       2467889999998999999999999999998888888988999999999999999


Q ss_pred             CEEEEcc
Q 026679          199 AMFVAAS  205 (235)
Q Consensus       199 ~~l~~~~  205 (235)
                      .+++-+.
T Consensus       306 ~ifaYA~  312 (347)
T KOG0647|consen  306 SIFAYAL  312 (347)
T ss_pred             CEEEEEe
Confidence            9998774

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.9e-25  Score=157.31  Aligned_cols=210  Identities=18%  Similarity=0.323  Sum_probs=159.7

Q ss_pred             CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc---------------------------eeee---
Q 026679            1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN---------------------------ACQG---   50 (235)
Q Consensus         1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---------------------------~~~~---   50 (235)
                      |.+.++...|++|.+.|..+++..  ..+++++.|.+|+.|.++..                           +.+.   
T Consensus        96 lsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD  173 (433)
T KOG0268|consen   96 LSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWD  173 (433)
T ss_pred             hhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecc
Confidence            356678899999999999999986  67899999999999984321                           1111   


Q ss_pred             --------eeec--cCCceEEEcCCC-CEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec
Q 026679           51 --------ILRL--RGRPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT  119 (235)
Q Consensus        51 --------~~~~--~~~~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  119 (235)
                              .+.-  ....++.|+|.. ..|++|..|+.|.+||+++..........     -.-+.++|+|.+-.++++.
T Consensus       174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-----mRTN~IswnPeafnF~~a~  248 (433)
T KOG0268|consen  174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-----MRTNTICWNPEAFNFVAAN  248 (433)
T ss_pred             cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-----ccccceecCccccceeecc
Confidence                    1111  123447788844 56778889999999999987753322222     2356789999888899999


Q ss_pred             CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-CCCcceeEEEeecCC
Q 026679          120 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPRR  198 (235)
Q Consensus       120 ~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~  198 (235)
                      +|..++.||++..+.... ....|.+.|.++.|||.|+-+++|+.|.+|+||..+.+.....+. ..-..|.++.|+-|.
T Consensus       249 ED~nlY~~DmR~l~~p~~-v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds  327 (433)
T KOG0268|consen  249 EDHNLYTYDMRNLSRPLN-VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS  327 (433)
T ss_pred             ccccceehhhhhhcccch-hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc
Confidence            999999999987543221 234566789999999999999999999999999998877654442 123579999999999


Q ss_pred             CEEEEcc--cceEEeeCCCCCC
Q 026679          199 AMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       199 ~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      +++++||  +++++|.-+....
T Consensus       328 kyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  328 KYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             cEEEecCCCcceeeeecchhhh
Confidence            9999999  8899998865443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.1e-23  Score=145.02  Aligned_cols=204  Identities=15%  Similarity=0.293  Sum_probs=158.1

Q ss_pred             cccccceeEEEeecCCCeeEEEeccceEEEEecCcc----eeeeeeeccCCce--EEEcC--CCCEEEEEecCCeEEEEe
Q 026679           11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN----ACQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~v~i~d   82 (235)
                      .+|.+-|.++.|.+.|+++|+|+.|++|+|||.+..    .+....+.|...+  +.|.+  -|+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            369999999999999999999999999999996543    4666777887766  55544  689999999999999998


Q ss_pred             ccCCCC-----CCceeEeecCCCcceeEEEEcc--CCCeEEEecCCCcEEEEEcCCCc----------------------
Q 026679           83 SRSYDK-----GPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGE----------------------  133 (235)
Q Consensus        83 ~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~----------------------  133 (235)
                      -...+.     .-.....+....+.|+++.|.|  -|-.|++++.||.+++|+....-                      
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            632221     1123445566778999999999  47789999999999999862110                      


Q ss_pred             -------------------------------------------eeeeeccCCCCCcceeeEEeCC----CcEEEEeCCCC
Q 026679          134 -------------------------------------------KRCGFSLEPSPNTNTEATFTPD----GQYVVSGSGDG  166 (235)
Q Consensus       134 -------------------------------------------~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg  166 (235)
                                                                 ....-++..+..+|+.++|.|+    -..||+++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence                                                       0111123456688999999995    35789999999


Q ss_pred             cEEEEEcCCC--------------------ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          167 TLHAWNINTR--------------------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       167 ~i~v~d~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                       |+||.++..                    +.+..+..|.+.|+.+.|+-.|..|++.+  |.+++|..+-
T Consensus       250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence             999998731                    23455678999999999999999999987  8899997653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=8.8e-26  Score=152.82  Aligned_cols=202  Identities=17%  Similarity=0.193  Sum_probs=176.1

Q ss_pred             hhhcccccceeEEEeec---CCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            8 RYFKGHKERVISLCMSP---VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      ....||+.+|..++|+|   +|-+|++++.|+.-.+-+-++|.-+.++.+|...+  ..++.+....++++.|-+-++||
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            45679999999999986   67889999999999888888999999999998776  55666777888999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      .-++..     .....|...|..++|+.|.++|++|+.+..+++||+...+... ....+|++.|..+.|....+.+++.
T Consensus        88 a~tgde-----lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   88 AVTGDE-----LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhh-----hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccCceEEee
Confidence            988774     2334577889999999999999999999999999998766432 3556788889999999999999999


Q ss_pred             CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679          163 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS  216 (235)
Q Consensus       163 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~  216 (235)
                      +.|+.|++||.+++..++++. ...+|+++..+++|++|..+. +.|++||.+.-
T Consensus       162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf  215 (334)
T KOG0278|consen  162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF  215 (334)
T ss_pred             ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc
Confidence            999999999999999999987 557899999999999999987 78999998753

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=4e-24  Score=155.60  Aligned_cols=197  Identities=19%  Similarity=0.267  Sum_probs=164.6

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcC--CCCEEEEEecCCeEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ--QGLVFAVAMEAGAIK   79 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~v~   79 (235)
                      ++.+.++.+++|.+.|.+++|-.....|++++.|++|++|+++....+.++.+|...++.++.  -++.+-+|+.|++++
T Consensus       232 ~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~r  311 (479)
T KOG0299|consen  232 DTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVR  311 (479)
T ss_pred             cccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeE
Confidence            467888999999999999999987788999999999999999999999999999877755544  567777788999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC----------CCCccee
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP----------SPNTNTE  149 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~~~i~~  149 (235)
                      +|++....     ...+.++.+.+-|++|-.+ .++++|+.+|.|.+|++...+++.......          ++.+|++
T Consensus       312 lwKi~ees-----qlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wits  385 (479)
T KOG0299|consen  312 LWKIPEES-----QLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITS  385 (479)
T ss_pred             EEeccccc-----eeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceee
Confidence            99995433     4556677888999999854 579999999999999999988877654321          1238899


Q ss_pred             eEEeCCCcEEEEeCCCCcEEEEEcCCC----ceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          150 ATFTPDGQYVVSGSGDGTLHAWNINTR----NEVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       150 ~~~~~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      ++..|...++++|+.+|.|++|.+.++    +++..+. -.+.|++++|+++|+.+++|-
T Consensus       386 la~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  386 LAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             eEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence            999999999999999999999999876    4455555 568899999999999887775

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=3.3e-24  Score=163.11  Aligned_cols=197  Identities=20%  Similarity=0.248  Sum_probs=166.1

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      +..++..|++|+..|.|++...++. +++||+|.++++|-.  +++...+++|...+  ++.-|++ .+++|+.|.+|++
T Consensus        90 ~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIkl  165 (745)
T KOG0301|consen   90 QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKL  165 (745)
T ss_pred             CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeee
Confidence            4578889999999999999887776 999999999999964  56666688888776  5556666 8999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      |.-.+.      ...+.+|..-|+.+++-+++. +++++.||.|++|++ +++.+.  ..++|...+.++...+++..++
T Consensus       166 Wk~~~~------l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~--~~~ghtn~vYsis~~~~~~~Iv  235 (745)
T KOG0301|consen  166 WKGGTL------LKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLL--EMHGHTNFVYSISMALSDGLIV  235 (745)
T ss_pred             ccCCch------hhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceee--eeeccceEEEEEEecCCCCeEE
Confidence            986432      445678999999999998764 899999999999998 666665  4456777799999888899999


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP  215 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~  215 (235)
                      ++++|+++++|+..  ++.+.+......|+++.+-++|..++.+| |.++||..+.
T Consensus       236 s~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  236 STGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence            99999999999975  77777775556899999999999998888 9999998763

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=5.2e-25  Score=162.37  Aligned_cols=195  Identities=17%  Similarity=0.243  Sum_probs=166.5

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeee--eeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG--ILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      .+.|.++...|||+.|++|+.-.++.|||+......-  .+......|  ++.+||.++.++++.||.|.|||+.+... 
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~-  543 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL-  543 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee-
Confidence            4678899999999999999999999999997664432  233322334  89999999999999999999999998665 


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH  169 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  169 (235)
                         ...+.+|...+.|+.+++||..|.+|+-|.+|+.||++.+..+..+.+.   ..|.++..+|++.+|++|-+++.+.
T Consensus       544 ---VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~---SQIfSLg~cP~~dWlavGMens~ve  617 (705)
T KOG0639|consen  544 ---VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS---SQIFSLGYCPTGDWLAVGMENSNVE  617 (705)
T ss_pred             ---eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh---hhheecccCCCccceeeecccCcEE
Confidence               7788899999999999999999999999999999999999887655443   5699999999999999999999999


Q ss_pred             EEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          170 AWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      |... ++.....+.-|++-|.++.|.+.|+++++.+  +-+..|...-+
T Consensus       618 vlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  618 VLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             EEec-CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence            9887 4555567777999999999999999999998  44888987543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=4.5e-24  Score=147.83  Aligned_cols=202  Identities=16%  Similarity=0.257  Sum_probs=154.5

Q ss_pred             cccccceeEEEeec-CCCeeEEEeccceEEEEecCccee----------eeee-e----ccC--CceEEEcC-CCCEEEE
Q 026679           11 KGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNAC----------QGIL-R----LRG--RPTVAFDQ-QGLVFAV   71 (235)
Q Consensus        11 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~----------~~~~-~----~~~--~~~~~~~~-~~~~l~~   71 (235)
                      +.|.+.|+++...+ .|+++++|+.||.|.+||++.-..          ...+ +    .|.  +..+.|-| |..+|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46889999999988 578999999999999999975320          1111 1    111  22366777 6778999


Q ss_pred             EecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC---CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679           72 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT  148 (235)
Q Consensus        72 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~  148 (235)
                      ++.|.++++||..+.+.     ......++.|.+-+++|-   ..++++|..+-.|++.|+.+|...+.+.  +|...|.
T Consensus       120 sSFDhtlKVWDtnTlQ~-----a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls--GHr~~vl  192 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQE-----AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS--GHRDGVL  192 (397)
T ss_pred             ccccceEEEeeccccee-----eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec--cccCceE
Confidence            99999999999998764     222234567888888883   3467888889999999999999877655  5556799


Q ss_pred             eeEEeCCCcE-EEEeCCCCcEEEEEcCCC-cee--------------eeecCCCcceeEEEeecCCCEEEEcc--cceEE
Q 026679          149 EATFTPDGQY-VVSGSGDGTLHAWNINTR-NEV--------------ACWNGNIGVVACLKWAPRRAMFVAAS--SVLSF  210 (235)
Q Consensus       149 ~~~~~~~~~~-l~~~~~dg~i~v~d~~~~-~~~--------------~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~i  210 (235)
                      ++.|+|...+ |++|+.||.|++||++.. .+.              ..-..|.+.+.+++|+.++.++++.+  ..+++
T Consensus       193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV  272 (397)
T ss_pred             EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence            9999998776 578999999999999753 111              11235778999999999999999998  66999


Q ss_pred             eeCCCCCCC
Q 026679          211 WIPNPSSNS  219 (235)
Q Consensus       211 w~~~~~~~~  219 (235)
                      |+...+...
T Consensus       273 wn~~~G~nt  281 (397)
T KOG4283|consen  273 WNMESGRNT  281 (397)
T ss_pred             eecccCccc
Confidence            999766543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=6e-25  Score=168.29  Aligned_cols=200  Identities=17%  Similarity=0.247  Sum_probs=168.5

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC---CCCEEEEEecCCeEEEEeccCCC
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ---QGLVFAVAMEAGAIKLFDSRSYD   87 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~---~~~~l~~~~~dg~v~i~d~~~~~   87 (235)
                      ....+.+++.+|+|++||+|..-|+++||++..-+....+..|...+  +.++.   ..++|++++.|.-|.+||+...-
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence            34579999999999999999999999999999988888888888766  55553   45789999999999999986421


Q ss_pred             CCCceeEeecCC-------------------------------------------------CcceeEEEEccCCCeEEEe
Q 026679           88 KGPFDTFLVGGD-------------------------------------------------TAEVCDIKFSNDGKSMLLT  118 (235)
Q Consensus        88 ~~~~~~~~~~~~-------------------------------------------------~~~v~~~~~~~~~~~l~~~  118 (235)
                      .   ....+.+|                                                 ...++.++..|..++++++
T Consensus       538 ~---l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~  614 (1080)
T KOG1408|consen  538 D---LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV  614 (1080)
T ss_pred             c---hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence            1   01111111                                                 2346677888888899999


Q ss_pred             cCCCcEEEEEcCCCceeeeeccCC-CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecC
Q 026679          119 TTNNNIYVLDAYGGEKRCGFSLEP-SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR  197 (235)
Q Consensus       119 ~~d~~i~~~d~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  197 (235)
                      +.|..|++||+.+++..+.|+... +.+....+...|.|.||++...|.++.++|.-+++++.++.+|...|+.+.|.+|
T Consensus       615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD  694 (1080)
T KOG1408|consen  615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND  694 (1080)
T ss_pred             ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence            999999999999999999887654 4477888999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEcc--cceEEeeCCC
Q 026679          198 RAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       198 ~~~l~~~~--~~i~iw~~~~  215 (235)
                      .+.|++.+  |.|.||.+..
T Consensus       695 CkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  695 CKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             chhheeecCCceEEEEECch
Confidence            99999887  7799999864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=4.1e-23  Score=143.47  Aligned_cols=195  Identities=14%  Similarity=0.226  Sum_probs=148.6

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~   91 (235)
                      ....|+++.|+|.++.|+.+++||++++||+........++.... ..++|.+ ...+++|+.||.|+.+|+.++.    
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~----   86 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN----   86 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc----
Confidence            467899999999999999999999999999988866555554332 2366665 6679999999999999999876    


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW  171 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  171 (235)
                       ...+..|..++.++..++....+++|+.|++|++||.+.......+...   ..|.++..  .|+.|++|+.+..+.+|
T Consensus        87 -~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~---kkVy~~~v--~g~~LvVg~~~r~v~iy  160 (323)
T KOG1036|consen   87 -EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG---KKVYCMDV--SGNRLVVGTSDRKVLIY  160 (323)
T ss_pred             -ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC---ceEEEEec--cCCEEEEeecCceEEEE
Confidence             4667789999999999998888999999999999999874443322211   24555444  55677777777778888


Q ss_pred             EcCCCce------------------------------------------------eeeecCCC---------cceeEEEe
Q 026679          172 NINTRNE------------------------------------------------VACWNGNI---------GVVACLKW  194 (235)
Q Consensus       172 d~~~~~~------------------------------------------------~~~~~~~~---------~~v~~~~~  194 (235)
                      |+++...                                                ...++.|.         -+|.+|+|
T Consensus       161 DLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F  240 (323)
T KOG1036|consen  161 DLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF  240 (323)
T ss_pred             EcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence            8765321                                                11233342         37899999


Q ss_pred             ecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          195 APRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       195 ~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      +|-...+++|+  |.+.+||+...+.
T Consensus       241 hp~~~tfaTgGsDG~V~~Wd~~~rKr  266 (323)
T KOG1036|consen  241 HPIHGTFATGGSDGIVNIWDLFNRKR  266 (323)
T ss_pred             ccccceEEecCCCceEEEccCcchhh
Confidence            99999999998  7799999976543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=8.9e-25  Score=157.37  Aligned_cols=169  Identities=18%  Similarity=0.348  Sum_probs=131.7

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc---CCceEEEcCCCCEEEEEecCCeEEEE
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR---GRPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      ++.+++.+|..+|..+.||||.++|++|+.|..+++||+.+|.....+...   ...+++|.|||..+++|+.|+.+..|
T Consensus       260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~w  339 (519)
T KOG0293|consen  260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMW  339 (519)
T ss_pred             eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEe
Confidence            456788999999999999999999999999999999999999988877654   24459999999999999999999999


Q ss_pred             eccCCCCCCc--------eeEe-----------------------------ecCCCcceeEEEEccCCC-----------
Q 026679           82 DSRSYDKGPF--------DTFL-----------------------------VGGDTAEVCDIKFSNDGK-----------  113 (235)
Q Consensus        82 d~~~~~~~~~--------~~~~-----------------------------~~~~~~~v~~~~~~~~~~-----------  113 (235)
                      |+........        .-..                             +.....++++++.+.+++           
T Consensus       340 dlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei  419 (519)
T KOG0293|consen  340 DLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI  419 (519)
T ss_pred             cCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence            8865221000        0000                             001234555665555554           


Q ss_pred             ----------------------------------eEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcE
Q 026679          114 ----------------------------------SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQY  158 (235)
Q Consensus       114 ----------------------------------~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~  158 (235)
                                                        ++++|++|+.|++|+..+++++..+..|  ...|++++|+| +..+
T Consensus       420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH--s~~vNcVswNP~~p~m  497 (519)
T KOG0293|consen  420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH--SKTVNCVSWNPADPEM  497 (519)
T ss_pred             EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC--cceeeEEecCCCCHHH
Confidence                                              6777888899999999999888776654  46699999999 5667


Q ss_pred             EEEeCCCCcEEEEEcCC
Q 026679          159 VVSGSGDGTLHAWNINT  175 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~  175 (235)
                      +|+++.||+|+||....
T Consensus       498 ~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  498 FASASDDGTIRIWGPSD  514 (519)
T ss_pred             hhccCCCCeEEEecCCc
Confidence            89999999999998753

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.6e-23  Score=145.50  Aligned_cols=199  Identities=14%  Similarity=0.211  Sum_probs=158.9

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      .|.-.|..+-...++.+|++++.|..|.+|+++ |+.+..+......-  .+.+|+|+++++++....|++|.+--.+.+
T Consensus       185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG  263 (420)
T KOG2096|consen  185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG  263 (420)
T ss_pred             hcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence            466777788887788999999999999999998 88888877665433  899999999999999999999987433221


Q ss_pred             ----CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC-------Cceeeee--ccCCCCCcceeeEEeCCC
Q 026679           90 ----PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-------GEKRCGF--SLEPSPNTNTEATFTPDG  156 (235)
Q Consensus        90 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~--~~~~~~~~i~~~~~~~~~  156 (235)
                          ....+.+.+|.+.|..++|+++.+.+++.+.||.+++||..-       .+.++..  .++...+....++++|+|
T Consensus       264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g  343 (420)
T KOG2096|consen  264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG  343 (420)
T ss_pred             chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC
Confidence                234677899999999999999999999999999999999742       1222222  122222344579999999


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeec-CCCcceeEEEeecCCCEEEEcc-cceEEee
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPRRAMFVAAS-SVLSFWI  212 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~  212 (235)
                      +.|+.+.. ..|++|..++++....++ .|...|.+|+|+++|+++++++ ..+++..
T Consensus       344 ~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  344 DSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             cEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence            99887654 369999999988776664 6889999999999999999998 6688876

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=8e-24  Score=150.77  Aligned_cols=205  Identities=17%  Similarity=0.293  Sum_probs=153.9

Q ss_pred             hhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCccee---eeeeeccCCce--EEEcC-CCCEEEEEecCC
Q 026679            4 NRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC---QGILRLRGRPT--VAFDQ-QGLVFAVAMEAG   76 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg   76 (235)
                      .+++.++.+|...=..++|||-. ..|++|..-+.|++|...++.-   ...+.+|...+  ++|+| ....|++|+.||
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg  280 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG  280 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence            45677889999999999999943 4588998889999999887642   22344455554  99999 457899999999


Q ss_pred             eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC---CceeeeeccCCCCCcceeeEEe
Q 026679           77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG---GEKRCGFSLEPSPNTNTEATFT  153 (235)
Q Consensus        77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~~~i~~~~~~  153 (235)
                      +|+|||++.....+.  .....|.+.|+.+.|+..-.+|++|+.||++++||+|.   ++++..++.|  ..+|+++.|+
T Consensus       281 sIrIWDiRs~~~~~~--~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H--k~pItsieW~  356 (440)
T KOG0302|consen  281 SIRIWDIRSGPKKAA--VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH--KAPITSIEWH  356 (440)
T ss_pred             eEEEEEecCCCccce--eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec--cCCeeEEEec
Confidence            999999998754443  33478999999999999888999999999999999986   4455566554  4669999999


Q ss_pred             C-CCcEEEEeCCCCcEEEEEcCCCce----------------eeeecCC--CcceeEEEeecCCC-EEEEcc-cceEEee
Q 026679          154 P-DGQYVVSGSGDGTLHAWNINTRNE----------------VACWNGN--IGVVACLKWAPRRA-MFVAAS-SVLSFWI  212 (235)
Q Consensus       154 ~-~~~~l~~~~~dg~i~v~d~~~~~~----------------~~~~~~~--~~~v~~~~~~~~~~-~l~~~~-~~i~iw~  212 (235)
                      | +...|++++.|..|.+||+....-                .+.+..|  ...+..+.|++.-. ++++.+ ..+.||.
T Consensus       357 p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  357 PHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             cccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence            9 456788899999999999853211                0111223  24688899998643 444444 5566664

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=3.3e-22  Score=148.22  Aligned_cols=209  Identities=12%  Similarity=0.111  Sum_probs=151.6

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEE-EeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCC-eEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMS-GSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAG-AIK   79 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg-~v~   79 (235)
                      +++.+..+..+.. +..++|+|+++.+++ ++.|+.+++||+++.+.+..+.... ...++++|++..++++..++ .+.
T Consensus        62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~  140 (300)
T TIGR03866        62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAH  140 (300)
T ss_pred             CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEE
Confidence            3445555555443 567899999987654 4568999999999888777766433 44599999999999988765 466


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CCCcEEEEEcCCCceeeeeccCCC-----CCcceeeEEe
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPS-----PNTNTEATFT  153 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~-----~~~i~~~~~~  153 (235)
                      .||..+.+.    .... ........++|+|+++.|++++ .++.|++||+.+++....+.....     ......++|+
T Consensus       141 ~~d~~~~~~----~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s  215 (300)
T TIGR03866       141 FIDTKTYEI----VDNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT  215 (300)
T ss_pred             EEeCCCCeE----EEEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC
Confidence            778876442    1111 1223457789999999886554 589999999999877665543211     1123568899


Q ss_pred             CCCcEEEE-eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679          154 PDGQYVVS-GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN  218 (235)
Q Consensus       154 ~~~~~l~~-~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~  218 (235)
                      |+++++++ .+.++.+.+||+++++.+..+. +...+.+++|+|++.+|++++   +.|++||+++.+.
T Consensus       216 ~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       216 KDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             CCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            99998654 4556789999999888776554 445789999999999998763   7899999988664

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=2.4e-24  Score=158.91  Aligned_cols=199  Identities=16%  Similarity=0.199  Sum_probs=158.1

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcc---eeeeeeecc----CCceEEEcCCCCEEEEEecCCeEEEEecc
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN---ACQGILRLR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~v~i~d~~   84 (235)
                      .|.+-|.++.++...++++||+. |.|+|||+...   .++..+..-    -...+.+.|||+.|++|+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            58888999999988899999986 78999999643   223333222    24458899999999999999999999998


Q ss_pred             CCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           85 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                      ......  ...+....-....++.+||.+..++++.||.|.+||+.+...+..+..  |...+.|+.+++||..|.+|+-
T Consensus       496 apTpri--kaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG--htDGascIdis~dGtklWTGGl  571 (705)
T KOG0639|consen  496 APTPRI--KAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG--HTDGASCIDISKDGTKLWTGGL  571 (705)
T ss_pred             CCCcch--hhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC--CCCCceeEEecCCCceeecCCC
Confidence            765411  112222234567889999999999999999999999999888876654  5566999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcccceEEeeCCCC
Q 026679          165 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPS  216 (235)
Q Consensus       165 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~  216 (235)
                      |.+++.||+++++.+.... ..+.|.++..+|++.+++.|-.+-.+|-+.+.
T Consensus       572 DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s  622 (705)
T KOG0639|consen  572 DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS  622 (705)
T ss_pred             ccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence            9999999999998876654 45789999999999999999744445544433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5.2e-23  Score=150.05  Aligned_cols=198  Identities=17%  Similarity=0.256  Sum_probs=163.3

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCc--ceeeeeeeccCCc--eEEEcCCCC-EEEEEecCCeEEEEeccCCCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRV--NACQGILRLRGRP--TVAFDQQGL-VFAVAMEAGAIKLFDSRSYDK   88 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~--~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~   88 (235)
                      .+.|+++.|+|....|++++.|+++++|.++.  +..++.+.....+  ..+|.|+|. .+++++.....+.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            36899999999999999999999999998854  3455555555544  489999998 899999999999999988765


Q ss_pred             CCceeEeecCC-CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc
Q 026679           89 GPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT  167 (235)
Q Consensus        89 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  167 (235)
                      .+...  ..++ ...+..+..+|++++|+..+..|.|.+....+++.+..+++.   +.+..++|+.+++.|++++.+|.
T Consensus       293 ~k~~~--~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie---G~v~~~~fsSdsk~l~~~~~~Ge  367 (514)
T KOG2055|consen  293 TKLKP--PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE---GVVSDFTFSSDSKELLASGGTGE  367 (514)
T ss_pred             ccccC--CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec---cEEeeEEEecCCcEEEEEcCCce
Confidence            33221  1222 346778899999999999999999999999999999888776   45899999999999999999999


Q ss_pred             EEEEEcCCCceeeeecCCCc-ceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          168 LHAWNINTRNEVACWNGNIG-VVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      |++||++...+++.+....+ .-++++.++++.++|+|+  |.+.|||.++.
T Consensus       368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC  419 (514)
T ss_pred             EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence            99999999999888864322 235677789999999998  88999997654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.7e-23  Score=144.45  Aligned_cols=211  Identities=20%  Similarity=0.355  Sum_probs=162.4

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC--------------------------
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--------------------------   56 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--------------------------   56 (235)
                      +...-+.+.+|..+|++++||++|+.|+|+|.|..|.+||+..|.+.+.+....                          
T Consensus        54 T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~v  133 (405)
T KOG1273|consen   54 TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVV  133 (405)
T ss_pred             ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEE
Confidence            445667889999999999999999999999999999999998887666554320                          


Q ss_pred             ----------------------CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCe
Q 026679           57 ----------------------RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS  114 (235)
Q Consensus        57 ----------------------~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  114 (235)
                                            .....|++.|+++++|...|.+.++|..+.+........  . ...|..+.++..|+.
T Consensus       134 i~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit--s-~~~IK~I~~s~~g~~  210 (405)
T KOG1273|consen  134 IDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT--S-VQAIKQIIVSRKGRF  210 (405)
T ss_pred             EEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec--h-heeeeEEEEeccCcE
Confidence                                  000235667899999999999999999987652221111  1 367889999999999


Q ss_pred             EEEecCCCcEEEEEcCC-------Ccee--eeeccCCCCCcceeeEEeCCCcEEEEeCC-CCcEEEEEcCCCceeeeecC
Q 026679          115 MLLTTTNNNIYVLDAYG-------GEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRNEVACWNG  184 (235)
Q Consensus       115 l~~~~~d~~i~~~d~~~-------~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~  184 (235)
                      |+.-+.|..|+.|+++.       ++..  +.+.---.+..-.+++|+.+|.|++.++. ...++||....|.+++.+.+
T Consensus       211 liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG  290 (405)
T KOG1273|consen  211 LIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG  290 (405)
T ss_pred             EEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence            99999999999999862       1111  11111112233567899999999987764 46799999999999999988


Q ss_pred             CC-cceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679          185 NI-GVVACLKWAPRRAMFVAAS-SVLSFWIPNPS  216 (235)
Q Consensus       185 ~~-~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~  216 (235)
                      .. .....+.|+|-...+++-. |.+++|.....
T Consensus       291 ~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  291 TKGEELLDVNWHPVRPIIASIASGVVYIWAVVQV  324 (405)
T ss_pred             CchhheeecccccceeeeeeccCCceEEEEeecc
Confidence            77 5778899999999888876 99999987543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.5e-23  Score=152.10  Aligned_cols=200  Identities=18%  Similarity=0.328  Sum_probs=153.8

Q ss_pred             cccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEEEEeccCC
Q 026679           11 KGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d~~~~   86 (235)
                      .+|+..|.+++|+..- +.||+||.|.+|++||+.++++..++..++..+  +.|+| ....|++|+.|++|.+.|.+..
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            4799999999998864 679999999999999999999999998776544  99999 5688999999999999999964


Q ss_pred             CCCCceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCC-ceeeeeccCCCCCcceeeEEeCC-CcEEEEeC
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPD-GQYVVSGS  163 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~  163 (235)
                      ..... ...   ..+.|-.++|.|.. ..++++..||+|+-+|+|.. +++  +.++.|...|.++++++. ..++++++
T Consensus       320 ~~s~~-~wk---~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v--wt~~AHd~~ISgl~~n~~~p~~l~t~s  393 (463)
T KOG0270|consen  320 SNSGK-EWK---FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV--WTLKAHDDEISGLSVNIQTPGLLSTAS  393 (463)
T ss_pred             cccCc-eEE---eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCce--eEEEeccCCcceEEecCCCCcceeecc
Confidence            33111 222   24678899999954 45777889999999999986 444  455667778999999985 45788999


Q ss_pred             CCCcEEEEEcCCCcee--eeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCC
Q 026679          164 GDGTLHAWNINTRNEV--ACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS  216 (235)
Q Consensus       164 ~dg~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~  216 (235)
                      .|+.+++|++......  ..-.-.-+...|.++.|+-.++++.+   +.++|||+.+.
T Consensus       394 ~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  394 TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             ccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            9999999998654432  22111224567888888776655544   45999998654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=3.2e-23  Score=143.64  Aligned_cols=164  Identities=18%  Similarity=0.284  Sum_probs=135.6

Q ss_pred             cccccceeEEEeec-CCCeeEEEeccceEEEEecCcceeeeeeeccCCc-eEEEcC---CCCEEEEEecCCeEEEEeccC
Q 026679           11 KGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQ---QGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus        11 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~---~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      .+|.-.|.++.|-| |...+.+++.|.+++|||..+-+....++.++.. .-+++|   ...++++|..+-.|++.|+..
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S  177 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS  177 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence            46888999999999 5578899999999999999998888888776643 366777   346788889999999999999


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCe-EEEecCCCcEEEEEcCCC-ceeeee-----------c-cCCCCCcceeeE
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGG-EKRCGF-----------S-LEPSPNTNTEAT  151 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~-~~~~~~-----------~-~~~~~~~i~~~~  151 (235)
                      +..    ...+.+|...|.++.|+|..++ |++|+.||.|++||++.. .+...+           + ...|.+.+..++
T Consensus       178 Gs~----sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla  253 (397)
T KOG4283|consen  178 GSF----SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA  253 (397)
T ss_pred             Ccc----eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence            876    7889999999999999998776 667889999999999854 222111           1 234568899999


Q ss_pred             EeCCCcEEEEeCCCCcEEEEEcCCCce
Q 026679          152 FTPDGQYVVSGSGDGTLHAWNINTRNE  178 (235)
Q Consensus       152 ~~~~~~~l~~~~~dg~i~v~d~~~~~~  178 (235)
                      |+.++.++++++.|..+++|+..+|+.
T Consensus       254 ~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  254 WTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             ecccchhhhhccCccceEEeecccCcc
Confidence            999999999999999999999887653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5.7e-23  Score=160.84  Aligned_cols=188  Identities=19%  Similarity=0.319  Sum_probs=156.7

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      ..+-++.+++|+.+|+++|.||.|-.|++-++.+......+.+|..++  +.++|++++||+.+.||.|++||+.++...
T Consensus        94 Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~  173 (933)
T KOG1274|consen   94 RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS  173 (933)
T ss_pred             eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence            345689999999999999999999999999999999999999998776  889999999999999999999999976542


Q ss_pred             CceeEee---c-CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679           90 PFDTFLV---G-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus        90 ~~~~~~~---~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                      .......   . .....+..++|+|++..+++.+.|+.|++|+..+.+....+....+...+..+.|+|+|+|||+++.|
T Consensus       174 ~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~  253 (933)
T KOG1274|consen  174 KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD  253 (933)
T ss_pred             hhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccC
Confidence            1111100   0 11456778999999989999999999999999999988888877776779999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEE
Q 026679          166 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA  203 (235)
Q Consensus       166 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  203 (235)
                      |.|.|||..+-..    ......|.+++|.|+...+-.
T Consensus       254 g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  254 GQILVWNVDTHER----HEFKRAVCCEAWKPNANAITL  287 (933)
T ss_pred             CcEEEEecccchh----ccccceeEEEecCCCCCeeEE
Confidence            9999999987222    223468999999998765543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5.2e-22  Score=150.91  Aligned_cols=200  Identities=14%  Similarity=0.264  Sum_probs=165.1

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcce-eeeeeeccCCc---eEEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRGRP---TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~---~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      ..+|.+|+++.+.+.||.+-.||.|.+|++..+- +...+.++...   .++|. ++..|++.+.+|.|.-||+.+.+. 
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~-  102 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ-  102 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce-
Confidence            4789999999999999999999999999998764 44556665533   38999 555688888999999999998876 


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH  169 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  169 (235)
                         ........+.+.+++.+|.+..++.|++||.+..++...++......+...++.+.++.|+|++..|+.|+.||.|+
T Consensus       103 ---~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir  179 (691)
T KOG2048|consen  103 ---KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR  179 (691)
T ss_pred             ---eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence               66677778899999999999999999999988888888888877777777778899999999999999999999999


Q ss_pred             EEEcCCCceeeeec--------CCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          170 AWNINTRNEVACWN--------GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       170 v~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      +||...+..+....        ....-|+++.|-.++ .|++|+  |.+++||...+++.
T Consensus       180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi  238 (691)
T KOG2048|consen  180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLI  238 (691)
T ss_pred             EEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchh
Confidence            99999988776221        123357788887665 556665  99999999876544

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=4.9e-23  Score=159.79  Aligned_cols=193  Identities=16%  Similarity=0.250  Sum_probs=163.8

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee---eccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL---RLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDK   88 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~   88 (235)
                      ...+++++.++.|++.+.|...|.|-+||+++|-....+   ..|...+  ++.+.-++.+++++.+|.+.+||......
T Consensus       448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l  527 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL  527 (910)
T ss_pred             CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence            467899999999999999999999999999999888887   3555555  77777788899999999999999987552


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL  168 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  168 (235)
                          ...+ .-...+.++..+.....++.+..|-.|.++|..+.+.++.+..+.  ..|++++|||||++|++++.|++|
T Consensus       528 ----~~~l-~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~--nritd~~FS~DgrWlisasmD~tI  600 (910)
T KOG1539|consen  528 ----KKSL-RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG--NRITDMTFSPDGRWLISASMDSTI  600 (910)
T ss_pred             ----eeee-ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc--cceeeeEeCCCCcEEEEeecCCcE
Confidence                1111 223567788888888889999999999999999999888776554  569999999999999999999999


Q ss_pred             EEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCC
Q 026679          169 HAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPN  214 (235)
Q Consensus       169 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~  214 (235)
                      ++||+.++.++..+. -..++.++.|+|+|.+|++..   ..|++|.-.
T Consensus       601 r~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  601 RTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             EEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            999999999988775 457899999999999999997   459999643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=5.5e-22  Score=147.02  Aligned_cols=208  Identities=15%  Similarity=0.118  Sum_probs=151.1

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCee-EEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEE-ecCCeE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVA-MEAGAI   78 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~dg~v   78 (235)
                      .+++.++.+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+. ...++++|+++.++++ ..++.+
T Consensus        19 ~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l   97 (300)
T TIGR03866        19 ATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLV   97 (300)
T ss_pred             CCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeE
Confidence            35666777776644 6789999999876 567788999999999888776665443 3448899999877655 568999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC-cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      ++||+++.+.    .... .....+.+++|+|+++.++++..++ .+.+||..+++........   ..+..++|+|+++
T Consensus        98 ~~~d~~~~~~----~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~  169 (300)
T TIGR03866        98 TVIDIETRKV----LAEI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD---QRPRFAEFTADGK  169 (300)
T ss_pred             EEEECCCCeE----EeEe-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC---CCccEEEECCCCC
Confidence            9999987442    2222 2223467899999999999888765 4677899887765543322   2356799999999


Q ss_pred             EEEEe-CCCCcEEEEEcCCCceeeeecCCC-------cceeEEEeecCCCEEEEc--c-cceEEeeCCCCCC
Q 026679          158 YVVSG-SGDGTLHAWNINTRNEVACWNGNI-------GVVACLKWAPRRAMFVAA--S-SVLSFWIPNPSSN  218 (235)
Q Consensus       158 ~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~--~-~~i~iw~~~~~~~  218 (235)
                      +|+++ ..++.|++||+++++.+..+..+.       .....++|+|++++++.+  + +.+.+||.++.+.
T Consensus       170 ~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~  241 (300)
T TIGR03866       170 ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV  241 (300)
T ss_pred             EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            88654 468999999999988766654221       123568899999986544  2 5699999876544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.4e-22  Score=138.33  Aligned_cols=192  Identities=15%  Similarity=0.225  Sum_probs=149.9

Q ss_pred             eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE
Q 026679           17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF   94 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~   94 (235)
                      -.|+.|++.|.+||.|..||.|.|||+.+...-+.+..|..++  ++|+++|+.|++++.|..+.+||+..+..  ....
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~--l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP--LKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc--eeEE
Confidence            6799999999999999999999999999998888887776554  99999999999999999999999998774  2222


Q ss_pred             eecCCCcceeEEEEccCCC-eEEEecCCCcEEEEEcCCCceeeeeccCCC---CCcceeeEEeCCCcEEEEeCCCCcEEE
Q 026679           95 LVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPS---PNTNTEATFTPDGQYVVSGSGDGTLHA  170 (235)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~v  170 (235)
                         ...++|..+.|+|... ..++.-.+..-.+.++..+... .+.....   .....+..|.+.|+++++|...|.+.+
T Consensus       104 ---rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv  179 (405)
T KOG1273|consen  104 ---RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV  179 (405)
T ss_pred             ---EccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence               2357899999999543 3333333444556665543221 1111111   122334568999999999999999999


Q ss_pred             EEcCCCceeeeecCCC-cceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          171 WNINTRNEVACWNGNI-GVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       171 ~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      ||..+.+++..++... ..|..+.++..|++++..+  ..|+.|+++
T Consensus       180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            9999999998887665 7899999999999999887  679999876

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=4.7e-22  Score=146.69  Aligned_cols=189  Identities=16%  Similarity=0.258  Sum_probs=157.8

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc---eEEEcCCCC-EEEEEecCCeEE
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP---TVAFDQQGL-VFAVAMEAGAIK   79 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~-~l~~~~~dg~v~   79 (235)
                      ..+.+.+++|...|+++.++....+||+++..|.|.|..+.++.....+......   .+.++|..+ +|.+++.+|.|.
T Consensus       111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt  190 (673)
T KOG4378|consen  111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT  190 (673)
T ss_pred             HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence            3466778999999999999999999999999999999999998887777766433   378999665 566788999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      +||+.....   .......|..+...++|+|. ...|++.+.|..|.+||.+.......+...   .+...++|+++|.+
T Consensus       191 lwDv~g~sp---~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~  264 (673)
T KOG4378|consen  191 LWDVQGMSP---IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTY  264 (673)
T ss_pred             EEeccCCCc---ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec---CCcceeeecCCceE
Confidence            999987654   23345678899999999994 556778899999999999977766555543   44788999999999


Q ss_pred             EEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecCC
Q 026679          159 VVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR  198 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~  198 (235)
                      |+.|+..|.|..||++. ..++..+..|...|++++|-|.-
T Consensus       265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            99999999999999985 55788888999999999998864

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1e-21  Score=137.17  Aligned_cols=172  Identities=17%  Similarity=0.245  Sum_probs=132.1

Q ss_pred             chhhhhhhhcccccceeEEEeecCCC--eeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCe
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVND--SFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGA   77 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~   77 (235)
                      .+.+.+..+-.|.+.|+++.|.++-.  +|++|+.||.|.+|+.....++..++.|...+  ++++|.+++.++.+.|+.
T Consensus        71 ~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~  150 (362)
T KOG0294|consen   71 RKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV  150 (362)
T ss_pred             cchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce
Confidence            34556667778999999999999764  89999999999999999999999999988666  999999999999999999


Q ss_pred             EEEEeccCCCCCCceeEeec-----------------------------------CCCcceeEEEEccCCCeEEEecCCC
Q 026679           78 IKLFDSRSYDKGPFDTFLVG-----------------------------------GDTAEVCDIKFSNDGKSMLLTTTNN  122 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~-----------------------------------~~~~~v~~~~~~~~~~~l~~~~~d~  122 (235)
                      ++.||+-+++..........                                   ..+..+.++.|. ++..|++|.+|+
T Consensus       151 lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~  229 (362)
T KOG0294|consen  151 LRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNE  229 (362)
T ss_pred             eeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCc
Confidence            99999977653211110000                                   001123333333 445688888889


Q ss_pred             cEEEEEcCCCceeeeeccCCCCCcceeeEE--eCCCcEEEEeCCCCcEEEEEcCCC
Q 026679          123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATF--TPDGQYVVSGSGDGTLHAWNINTR  176 (235)
Q Consensus       123 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~v~d~~~~  176 (235)
                      .|.+||..+..+...+.  .|+..|-.+.+  .|++.+|++++.||.|+|||++..
T Consensus       230 ~i~~~D~ds~~~~~~~~--AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  230 WISLKDTDSDTPLTEFL--AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEeccCCCccceeee--cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            99999988876666554  45566877774  567889999999999999999765

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=3.1e-22  Score=152.55  Aligned_cols=208  Identities=17%  Similarity=0.239  Sum_probs=165.6

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEecc-----ceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGSLD-----HSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~   79 (235)
                      ++.+-||.-.|.+++.+|+++++|++...     ..|++|+..+......+..|.-.+  ++|+||+++|++.+.|+++.
T Consensus       518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s  597 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS  597 (764)
T ss_pred             hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence            45678999999999999999999998764     359999999988888899998666  99999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC--ceeeeeccCCCCCcceeeEEeCC--
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRCGFSLEPSPNTNTEATFTPD--  155 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~i~~~~~~~~--  155 (235)
                      +|.................|..-|.++.|+|++.++++++.|..|++|.....  +.+..+.......+++.+++.|-  
T Consensus       598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~  677 (764)
T KOG1063|consen  598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH  677 (764)
T ss_pred             eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc
Confidence            99986655444444457789999999999999999999999999999999877  54544444456678999999872  


Q ss_pred             ---CcEEEEeCCCCcEEEEEcCCCc------------eeeeecCCCcceeEEEeecC----------CCEEEEcc--cce
Q 026679          156 ---GQYVVSGSGDGTLHAWNINTRN------------EVACWNGNIGVVACLKWAPR----------RAMFVAAS--SVL  208 (235)
Q Consensus       156 ---~~~l~~~~~dg~i~v~d~~~~~------------~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~--~~i  208 (235)
                         +..+++|-+.|.|.+|....-.            ......+|...|..+.|.|.          ...|++|+  .++
T Consensus       678 ~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~v  757 (764)
T KOG1063|consen  678 NEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESV  757 (764)
T ss_pred             ccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeeccccee
Confidence               3378899999999999965111            11122356778999999975          23456666  668


Q ss_pred             EEeeCC
Q 026679          209 SFWIPN  214 (235)
Q Consensus       209 ~iw~~~  214 (235)
                      ++++++
T Consensus       758 ri~nv~  763 (764)
T KOG1063|consen  758 RIFNVD  763 (764)
T ss_pred             EEeecc
Confidence            888764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.8e-22  Score=145.58  Aligned_cols=208  Identities=17%  Similarity=0.245  Sum_probs=167.1

Q ss_pred             hhhhhhhcccccceeEEEeecCCC-eeEEEeccceEEEEecCcceeeeeeeccC-----CceEEEcCCCCEEEEEecCCe
Q 026679            4 NRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG-----RPTVAFDQQGLVFAVAMEAGA   77 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~dg~   77 (235)
                      +..++.+.--..+|.+.+|.|+|. .+++++....++.||+.+.+..+.-...+     .....++|++++|+..+..|.
T Consensus       247 N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~  326 (514)
T KOG2055|consen  247 NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH  326 (514)
T ss_pred             ChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCce
Confidence            344555555667999999999998 89999999999999998876554433222     223788999999999999999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      |.+....+++.  +..++   ..+.|..+.|+.+++.|++++.+|.|++||++...++..+.-.+.- .-+.++.++++.
T Consensus       327 I~lLhakT~el--i~s~K---ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng~  400 (514)
T KOG2055|consen  327 IHLLHAKTKEL--ITSFK---IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV-HGTSLCISLNGS  400 (514)
T ss_pred             EEeehhhhhhh--hheee---eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc-ceeeeeecCCCc
Confidence            99998888664  12222   3468999999999999999999999999999999888887755432 346688889999


Q ss_pred             EEEEeCCCCcEEEEEcCC------CceeeeecCCCcceeEEEeecCCCEEEEcc----cceEEeeCCCCC
Q 026679          158 YVVSGSGDGTLHAWNINT------RNEVACWNGNIGVVACLKWAPRRAMFVAAS----SVLSFWIPNPSS  217 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~i~iw~~~~~~  217 (235)
                      |||+|+..|.|.|||..+      .+++..+..-...|++|+|+|+.++|+.+|    ..+++-.+.+..
T Consensus       401 ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T  470 (514)
T KOG2055|consen  401 YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT  470 (514)
T ss_pred             eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence            999999999999999753      456677766678899999999999999998    448887775543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=2.6e-22  Score=146.31  Aligned_cols=207  Identities=15%  Similarity=0.227  Sum_probs=160.1

Q ss_pred             hhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccCCce----EEEcCCCCEEEEEecCCeEEEE
Q 026679            7 LRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      +..+..|+++|.++.|+|.. ..+++.|.||+|+.-|++.......+.......    +.++.+...++.+..-|...+|
T Consensus       227 v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i  306 (498)
T KOG4328|consen  227 VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI  306 (498)
T ss_pred             eEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEE
Confidence            44567899999999999965 789999999999999998876555555433222    6677777888888888899999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeee--eccCCCCCcceeeEEeCCCcE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCG--FSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      |.++...   ....+.-|...|++++++|- ..+|++++.|++.++||++.-.....  +..-.|...|.+..|||.+-.
T Consensus       307 D~R~~~s---~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt  383 (498)
T KOG4328|consen  307 DLRTDGS---EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT  383 (498)
T ss_pred             EeecCCc---cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc
Confidence            9998664   23344557779999999994 56789999999999999987544442  444567788999999998777


Q ss_pred             EEEeCCCCcEEEEEcC----CCceeeeecCCCc------ceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          159 VVSGSGDGTLHAWNIN----TRNEVACWNGNIG------VVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~----~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      |++.+.|..|+|||..    ...+...+. |..      ......|.|+..++++|-  ..|-|++-+.++
T Consensus       384 l~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  384 LLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             eEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence            9999999999999983    334444443 321      344668999999999997  668899887765

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=8.4e-23  Score=163.21  Aligned_cols=210  Identities=17%  Similarity=0.238  Sum_probs=162.6

Q ss_pred             hhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeee----eccCCceEEEcC-CCCEEEEEecCCe
Q 026679            4 NRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGIL----RLRGRPTVAFDQ-QGLVFAVAMEAGA   77 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~~~~~~~~~~-~~~~l~~~~~dg~   77 (235)
                      ...+.+++.|++.|..+.|++.. ++||+|+.||.|.|||+...+.-...    ....+.+++|+. ....|++++.+|.
T Consensus       106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~  185 (1049)
T KOG0307|consen  106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR  185 (1049)
T ss_pred             hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence            35678889999999999999975 59999999999999999875543333    223345588876 4567889999999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCC-CeEEEecCCC---cEEEEEcCCCc-eeeeeccCCCCCcceeeEE
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNN---NIYVLDAYGGE-KRCGFSLEPSPNTNTEATF  152 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~---~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~  152 (235)
                      +.|||++..+.  ...+........+..++|+|+. ..+++++.|.   .|.+||+|.-. ..+++  ..|...|.++.|
T Consensus       186 ~~iWDlr~~~p--ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~--~~H~~GilslsW  261 (1049)
T KOG0307|consen  186 AVIWDLRKKKP--IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL--EGHQRGILSLSW  261 (1049)
T ss_pred             ceeccccCCCc--ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh--cccccceeeecc
Confidence            99999998653  2222323333457899999975 4566666644   49999998644 34444  455667999999


Q ss_pred             eCCC-cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCC-EEEEcc--cceEEeeCCCCC
Q 026679          153 TPDG-QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       153 ~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~~i~iw~~~~~~  217 (235)
                      ++.+ ++|++++.|+.|.+|+.++++.+..+......+..+.|+|... .+++++  |.|.||.+.+..
T Consensus       262 c~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  262 CPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9965 8999999999999999999999999988888999999999877 444555  889999987654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=9.8e-22  Score=142.74  Aligned_cols=186  Identities=14%  Similarity=0.223  Sum_probs=141.7

Q ss_pred             CCeeEEEeccceEEEEecCcceee---ee------------------eeccCCce--EEEcC-CCCEEEEEecCCeEEEE
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQ---GI------------------LRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLF   81 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~---~~------------------~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~   81 (235)
                      |+++|.|..|..|.|||+.-...+   ..                  ..+|...+  ++|+. -.+.|++|+.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            579999999999999998632100   00                  01222222  44444 34689999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCC-ceeeeeccCCCCCcceeeEEeCC-CcE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPD-GQY  158 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~  158 (235)
                      |+.++++    ...+..|...|.++.|+| ....|++|+.|++|.+.|.|.. ..-..++..   +.|..++|.|. ...
T Consensus       272 D~~~g~p----~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~---g~VEkv~w~~~se~~  344 (463)
T KOG0270|consen  272 DVDTGKP----KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD---GEVEKVAWDPHSENS  344 (463)
T ss_pred             EcCCCCc----ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec---cceEEEEecCCCcee
Confidence            9999886    556667899999999999 5778999999999999999952 222233333   45888999995 456


Q ss_pred             EEEeCCCCcEEEEEcCCC-ceeeeecCCCcceeEEEeecCCCE-EEEcc--cceEEeeCCCCCC
Q 026679          159 VVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAM-FVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~~i~iw~~~~~~~  218 (235)
                      +++++.||.++-+|+|+. +++.+++.|.++|.+|++++.-.. +++++  +.+++|++.....
T Consensus       345 f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  345 FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence            778889999999999975 899999999999999999986544 55555  7799999976544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=9.4e-22  Score=149.96  Aligned_cols=193  Identities=15%  Similarity=0.254  Sum_probs=163.6

Q ss_pred             hhcccccceeE-EEeec-CCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcC-CCCEEEEEecCCeEEEEeccC
Q 026679            9 YFKGHKERVIS-LCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ-QGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus         9 ~~~~h~~~v~~-~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      .+.+|.+-|.+ +++.+ ++..+++|+.|.++.+|......+...+++|..++++.+. ....+++|+.|.++++|-...
T Consensus        52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~  131 (745)
T KOG0301|consen   52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE  131 (745)
T ss_pred             ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh
Confidence            36677777776 77775 4456999999999999999999999999999998877764 333489999999999998765


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                      ..      ..+.+|+..|.+++.-|+. .+++|+.|.+|++|.-  ++..+.+..  |...|+.+++-|++ .+++++.|
T Consensus       132 l~------~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g--HtD~VRgL~vl~~~-~flScsND  199 (745)
T KOG0301|consen  132 LV------YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG--HTDCVRGLAVLDDS-HFLSCSND  199 (745)
T ss_pred             hh------cccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc--chhheeeeEEecCC-CeEeecCC
Confidence            33      3478999999999999987 7999999999999974  666666654  66779999998875 46789999


Q ss_pred             CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          166 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       166 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      |.|+.|++ +++.+.++.+|...|+++...+++..+++++  ++++||+..
T Consensus       200 g~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  200 GSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            99999999 8999999999999999999888888888887  889999876

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=8.9e-21  Score=144.29  Aligned_cols=204  Identities=15%  Similarity=0.205  Sum_probs=164.1

Q ss_pred             hhccc-ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC
Q 026679            9 YFKGH-KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus         9 ~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      .+.++ .+.|.+++|++ +..|++.+.+|.|.-||+.+.+....+...+..+  ++.+|.+..++.|+.||.+..++...
T Consensus        63 vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p  141 (691)
T KOG2048|consen   63 VIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP  141 (691)
T ss_pred             EEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC
Confidence            34554 46899999995 6678899999999999999999988888777665  89999999999999999777777766


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc-----CC-CCCcceeeEEeCCCcEE
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-----EP-SPNTNTEATFTPDGQYV  159 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~-~~~~i~~~~~~~~~~~l  159 (235)
                      ...  .....+....+.+.+++|+|++..++.|+.||.|++||...++.......     .. .+.-|.++.|-.+ ..|
T Consensus       142 ~~I--~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI  218 (691)
T KOG2048|consen  142 DKI--TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STI  218 (691)
T ss_pred             ceE--EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcE
Confidence            443  12233444568899999999999999999999999999999887763222     22 2233555555544 578


Q ss_pred             EEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          160 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      ++|...|.|.+||...+.++..+..|.+.|.+++..+++.++.+++  +.+.-|...+.
T Consensus       219 ~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  219 ASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             EEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence            9999999999999999999999999999999999999999998888  66666666554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=7.7e-22  Score=143.85  Aligned_cols=206  Identities=17%  Similarity=0.244  Sum_probs=157.0

Q ss_pred             hhhhhhcccccceeEEEeecCC--CeeEEEeccceEEEEecCcc----eeeeeeeccCCce--EEEcC-CCCEEEEEecC
Q 026679            5 RILRYFKGHKERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVN----ACQGILRLRGRPT--VAFDQ-QGLVFAVAMEA   75 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~d   75 (235)
                      ......+-|.++|++++|+|..  +++|+|..-|.|-+||+.+.    ..+..+..|..++  +.|+| +...+++.+.|
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence            3445567789999999999965  57899999999999999532    2334445555444  99999 55789999999


Q ss_pred             CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce-eeeeccCCCCCcceeeEEeC
Q 026679           76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-RCGFSLEPSPNTNTEATFTP  154 (235)
Q Consensus        76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~i~~~~~~~  154 (235)
                      |+|++-|+++.....  ..........+..+.|+.+...++++..=|...+||++++.. ...+.++  ...|..++++|
T Consensus       257 GtiR~~D~~~~i~e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh--~kKI~sv~~NP  332 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEE--VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH--KKKITSVALNP  332 (498)
T ss_pred             ceeeeeeecchhhHH--HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh--hcccceeecCC
Confidence            999999998754322  222223445678889998888888888878999999998765 3333444  34699999999


Q ss_pred             C-CcEEEEeCCCCcEEEEEcCCCceee----eecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          155 D-GQYVVSGSGDGTLHAWNINTRNEVA----CWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       155 ~-~~~l~~~~~dg~i~v~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      - ..+||+++.|++.+|||++......    ....|...|.+..|+|.+-.|++.+  ..|+|||..
T Consensus       333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            4 5678999999999999998643322    2345889999999999887788887  779999984

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=9.5e-22  Score=146.71  Aligned_cols=209  Identities=13%  Similarity=0.223  Sum_probs=170.7

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCc--------ceeeeeeeccCCce--EEEcCCCCEEEEEecCCeE
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV--------NACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--------~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v   78 (235)
                      ++..|.+.|+.+.|.|....|++++.||++++|+++.        -+++.++.+|..++  +++.+++..+++|+.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            4567889999999999999999999999999999932        24677888888776  7788899999999999999


Q ss_pred             EEEeccCCC------CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec-------------
Q 026679           79 KLFDSRSYD------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-------------  139 (235)
Q Consensus        79 ~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-------------  139 (235)
                      +.|++....      ......-.+.+|...++.+++++....|++++.||+++.|+...... ..+.             
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence            999765211      11223445678999999999999999999999999999999754433 1110             


Q ss_pred             -------------------------------------cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee
Q 026679          140 -------------------------------------LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW  182 (235)
Q Consensus       140 -------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  182 (235)
                                                           .......+..+.++|.+.+.+++.+|+.|+++|..+++.++..
T Consensus       448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~  527 (577)
T KOG0642|consen  448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM  527 (577)
T ss_pred             ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence                                                 0001134566788898999999999999999999999999999


Q ss_pred             cCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          183 NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       183 ~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      ..|...++++++.|+|.+|++++  +.+++|.++....
T Consensus       528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             eeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence            99999999999999999999998  7799999866543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=2.2e-21  Score=150.70  Aligned_cols=153  Identities=14%  Similarity=0.154  Sum_probs=132.0

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEee---cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceee
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV---GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC  136 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  136 (235)
                      ++.++.|++.+.|...|.|-+|+++.+-.    ...+   ..|..+|+.++...-++.+++++.+|.+.+||........
T Consensus       454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~----r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~  529 (910)
T KOG1539|consen  454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIH----RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK  529 (910)
T ss_pred             EEEeccCceEEEeccCCeEEEEEcccCee----ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee
Confidence            66677788888888888999998887643    2333   4788999999999888999999999999999999888776


Q ss_pred             eeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          137 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      .+...   ..+.++..+.....++.+..|-.|+++|..+.+.+..+.+|...|++++|||||++|++++  ++|++||+.
T Consensus       530 ~l~l~---~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp  606 (910)
T KOG1539|consen  530 SLRLG---SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP  606 (910)
T ss_pred             eeccC---CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence            66654   3478888888888999999999999999999999999999999999999999999999998  889999998


Q ss_pred             CCCCC
Q 026679          215 PSSNS  219 (235)
Q Consensus       215 ~~~~~  219 (235)
                      ++.+.
T Consensus       607 t~~lI  611 (910)
T KOG1539|consen  607 TGTLI  611 (910)
T ss_pred             Cccee
Confidence            76543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=4.2e-21  Score=134.69  Aligned_cols=199  Identities=19%  Similarity=0.369  Sum_probs=148.4

Q ss_pred             hhhhhhhhcc--cccc---eeEEEeecCCCeeEEEeccceEEEEec-Ccceeeeee---ec-----cC-CceEEEcC-CC
Q 026679            3 DNRILRYFKG--HKER---VISLCMSPVNDSFMSGSLDHSVRIWDL-RVNACQGIL---RL-----RG-RPTVAFDQ-QG   66 (235)
Q Consensus         3 ~~~~~~~~~~--h~~~---v~~~~~~~~~~~l~s~~~d~~i~vwd~-~~~~~~~~~---~~-----~~-~~~~~~~~-~~   66 (235)
                      +|++-..+++  |...   -.+++|+|||..|++|- ...|+++|+ +.|+.-..+   ..     .+ ..+++++| +.
T Consensus       142 tG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~  220 (406)
T KOG2919|consen  142 TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDS  220 (406)
T ss_pred             ccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCC
Confidence            3444444543  4443   45899999999999875 578999999 555422211   11     11 23489999 55


Q ss_pred             CEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCCCc-eeeeeccCCCC
Q 026679           67 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGE-KRCGFSLEPSP  144 (235)
Q Consensus        67 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~-~~~~~~~~~~~  144 (235)
                      +.+++++....+-||.-.....    ...+.+|.+.|+.++|.++|+.|++|.. +..|..||+|... ++..+..+.. 
T Consensus       221 ~~~a~gsY~q~~giy~~~~~~p----l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~-  295 (406)
T KOG2919|consen  221 KTLAVGSYGQRVGIYNDDGRRP----LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG-  295 (406)
T ss_pred             cceeeecccceeeeEecCCCCc----eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc-
Confidence            6899999988888887665554    6667799999999999999999999986 7789999998654 3332222221 


Q ss_pred             Cccee--eEEeCCCcEEEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecCCCEEEEcccc
Q 026679          145 NTNTE--ATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAASSV  207 (235)
Q Consensus       145 ~~i~~--~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  207 (235)
                      ..-..  ....|++++|++|+.||.|++||+++ +..+..+..+...+..++++|--.++++++|.
T Consensus       296 ~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  296 DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            02223  44568999999999999999999998 77788888899999999999998999998876

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=3.7e-21  Score=145.61  Aligned_cols=212  Identities=17%  Similarity=0.245  Sum_probs=152.0

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeee--eeccCCce--EEEcC-CCCEEEEEecCCeEEEE
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGI--LRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~   81 (235)
                      ++.+..|.+.|..+.|.|....|++++.|.++++||+++.++...  +.+|...+  ++|.| +...|++|+.||.+.||
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            455678999999999999667899999999999999999887766  66776544  99999 55789999999999999


Q ss_pred             eccCCCCC------------------Cc-----eeEeecCCCcceeE---EEEccCCCeEEEecC-CCcEEEEEcCCCce
Q 026679           82 DSRSYDKG------------------PF-----DTFLVGGDTAEVCD---IKFSNDGKSMLLTTT-NNNIYVLDAYGGEK  134 (235)
Q Consensus        82 d~~~~~~~------------------~~-----~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~  134 (235)
                      |++-....                  +.     .......+...+.+   +.+..|...|++++. |+.|++||++....
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence            98753210                  00     01111223334444   455668888999888 99999999987544


Q ss_pred             eee------eccCCC---CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc--eeeeecCCCc--ceeEEEeecCCCEE
Q 026679          135 RCG------FSLEPS---PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN--EVACWNGNIG--VVACLKWAPRRAMF  201 (235)
Q Consensus       135 ~~~------~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l  201 (235)
                      ...      ...+.+   ...+.++.....|.+|++.+.|+.|++|++.+..  ++..+.++..  ....-..+|++.++
T Consensus       253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l  332 (720)
T KOG0321|consen  253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL  332 (720)
T ss_pred             ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence            322      122222   2446778888888999888889999999997543  3455554422  11222458999999


Q ss_pred             EEcc--cceEEeeCCCCCC
Q 026679          202 VAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       202 ~~~~--~~i~iw~~~~~~~  218 (235)
                      ++|+  ...++|.++....
T Consensus       333 ~SgSsd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  333 LSGSSDEQAYIWVVSSPEA  351 (720)
T ss_pred             eccCCCcceeeeeecCccC
Confidence            9998  7799999876543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=1e-21  Score=144.91  Aligned_cols=194  Identities=14%  Similarity=0.210  Sum_probs=155.6

Q ss_pred             eEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEe
Q 026679           18 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL   95 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~   95 (235)
                      .|++......++++|+..+.|+|||++...+.+.++.|...+  +.++....+||+++..|.|.+..+.+...    ...
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~----tt~  158 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK----TTT  158 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc----ccc
Confidence            344444445789999999999999999877888888887655  88888999999999999999999988664    222


Q ss_pred             ec-CCCcceeEEEEccCCCe-EEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC-CcEEEEeCCCCcEEEEE
Q 026679           96 VG-GDTAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWN  172 (235)
Q Consensus        96 ~~-~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d  172 (235)
                      +. +....|+-+.|+|..+. |.+++.+|.|.+||+....+...+ ...|..+...++|+|. ..+|++.+.|..|.+||
T Consensus       159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD  237 (673)
T KOG4378|consen  159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD  237 (673)
T ss_pred             eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch-hhhccCCcCcceecCCccceEEEecccceEEEee
Confidence            22 22345778999997665 556889999999999776665543 3567788999999995 55678899999999999


Q ss_pred             cCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          173 INTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      .+..+....+. ...+...++|.++|.+|++|.  |.+..||++..+
T Consensus       238 ~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  238 IRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             cccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence            98777766665 456899999999999999998  889999998654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=7.7e-22  Score=138.47  Aligned_cols=210  Identities=17%  Similarity=0.263  Sum_probs=154.2

Q ss_pred             chhhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeec---cCCce--EEEcCCCCEEEEEecC
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRL---RGRPT--VAFDQQGLVFAVAMEA   75 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~--~~~~~~~~~l~~~~~d   75 (235)
                      .++++...+.+|...|+.+.++|+. ++++++|.|.+||+||+++..++..+-+   |...+  +.|+++|.++++++.|
T Consensus       123 ~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD  202 (385)
T KOG1034|consen  123 VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD  202 (385)
T ss_pred             chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc
Confidence            4678888999999999999999976 7899999999999999999999988754   44444  8899999999999999


Q ss_pred             CeEEEEeccCCCCC----------------C-------ceeE-eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC-
Q 026679           76 GAIKLFDSRSYDKG----------------P-------FDTF-LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-  130 (235)
Q Consensus        76 g~v~i~d~~~~~~~----------------~-------~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-  130 (235)
                      .++++|++...+..                +       ...+ ...-|...|-|+.|-  |+++++-+-++.|..|... 
T Consensus       203 hslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgk  280 (385)
T KOG1034|consen  203 HSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGK  280 (385)
T ss_pred             ceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecch
Confidence            99999999832210                0       0011 223456667777775  5788888889999999872 


Q ss_pred             CCce-------------eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCcee--eeec--CCCcceeEEE
Q 026679          131 GGEK-------------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV--ACWN--GNIGVVACLK  193 (235)
Q Consensus       131 ~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~--~~~~~v~~~~  193 (235)
                      -++.             ...+..+...-+-...+|.|-+++|+.|...|.+++||+++.++.  .++.  .....|...+
T Consensus       281 l~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~s  360 (385)
T KOG1034|consen  281 LEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTS  360 (385)
T ss_pred             hhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeee
Confidence            1111             122222222222334566778899999999999999999877663  2222  1245799999


Q ss_pred             eecCCCEEEEcccceEEeeC
Q 026679          194 WAPRRAMFVAASSVLSFWIP  213 (235)
Q Consensus       194 ~~~~~~~l~~~~~~i~iw~~  213 (235)
                      |+.|+.+|+....+..||.+
T Consensus       361 fS~dgs~lv~vcdd~~Vwrw  380 (385)
T KOG1034|consen  361 FSRDGSILVLVCDDGTVWRW  380 (385)
T ss_pred             ecccCcEEEEEeCCCcEEEE
Confidence            99999999888755555544

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=2.4e-21  Score=147.81  Aligned_cols=207  Identities=19%  Similarity=0.298  Sum_probs=160.1

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce----ee--eeeeccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA----CQ--GILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      ..+.||.+.|++++|+|.|++|++.|.|.+-|++-.-..+    .+  ..+.++...++++-+....|++|.....+++|
T Consensus       355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF  434 (764)
T KOG1063|consen  355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVF  434 (764)
T ss_pred             cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeee
Confidence            3467999999999999999999999999999998654111    11  12334456678887777788899888999999


Q ss_pred             eccC-------------------------------------------CC------------------CCC----------
Q 026679           82 DSRS-------------------------------------------YD------------------KGP----------   90 (235)
Q Consensus        82 d~~~-------------------------------------------~~------------------~~~----------   90 (235)
                      +...                                           +.                  .+|          
T Consensus       435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL  514 (764)
T KOG1063|consen  435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL  514 (764)
T ss_pred             cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence            7542                                           00                  000          


Q ss_pred             -ceeEeecCCCcceeEEEEccCCCeEEEecCC-----CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           91 -FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        91 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                       ....++.+|...|.+++.+|+++.+++++..     ..|++|+..+....+.+  ..|.-.|+.++|||||++|++.+.
T Consensus       515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L--~~HsLTVT~l~FSpdg~~LLsvsR  592 (764)
T KOG1063|consen  515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL--EGHSLTVTRLAFSPDGRYLLSVSR  592 (764)
T ss_pred             chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee--cccceEEEEEEECCCCcEEEEeec
Confidence             0012334688899999999999999998864     35999998887766644  455567999999999999999999


Q ss_pred             CCcEEEEEcCCCce----eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          165 DGTLHAWNINTRNE----VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       165 dg~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      |.++.+|.......    ....+.|..-|++..|+|++.+++++|  ..+++|.....
T Consensus       593 DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  593 DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            99999999754322    233678999999999999999999999  67999988655

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=5.7e-21  Score=144.61  Aligned_cols=214  Identities=20%  Similarity=0.309  Sum_probs=151.4

Q ss_pred             hhhhhhh--hcccccceeEEEeecCC-CeeEEEeccceEEEEecCccee--------------------e-------eee
Q 026679            3 DNRILRY--FKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC--------------------Q-------GIL   52 (235)
Q Consensus         3 ~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~--------------------~-------~~~   52 (235)
                      +++++..  +.||...|.+++|.|.. ..|++|+.||.|.|||++....                    .       ...
T Consensus       131 ~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~  210 (720)
T KOG0321|consen  131 TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW  210 (720)
T ss_pred             cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence            4455555  88999999999999966 5789999999999999863220                    0       000


Q ss_pred             eccCCc--e---EEEcCCCCEEEEEec-CCeEEEEeccCCCC----CCceeEeecCC---CcceeEEEEccCCCeEEEec
Q 026679           53 RLRGRP--T---VAFDQQGLVFAVAME-AGAIKLFDSRSYDK----GPFDTFLVGGD---TAEVCDIKFSNDGKSMLLTT  119 (235)
Q Consensus        53 ~~~~~~--~---~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~----~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~  119 (235)
                      ..+...  .   +.+..|...|++++. |+.|++||++....    .+.....+..+   ...+.++.....|.+|++.+
T Consensus       211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence            111111  1   556678889999888 99999999987543    22222233333   34567788888889999999


Q ss_pred             CCCcEEEEEcCCCceeeeeccCCC--CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc-eeeeecCCCcceeEEEeec
Q 026679          120 TNNNIYVLDAYGGEKRCGFSLEPS--PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAP  196 (235)
Q Consensus       120 ~d~~i~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~  196 (235)
                      .|+.|++|++.+..........++  ...-..-..+|++.+|++|+.|...++|.+.+.+ ....+.+|...|++++|.|
T Consensus       291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence            999999999987654333222222  2222334578999999999999999999998754 3566789999999999988


Q ss_pred             CC-CEEEEcc--cceEEeeCCCC
Q 026679          197 RR-AMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       197 ~~-~~l~~~~--~~i~iw~~~~~  216 (235)
                      .. .-+++++  ..+++|++...
T Consensus       371 S~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  371 SATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             ccCCCceeeccCcceEEEeccCc
Confidence            32 3344445  66999999543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=6.6e-22  Score=158.19  Aligned_cols=203  Identities=15%  Similarity=0.278  Sum_probs=155.1

Q ss_pred             ccceeEEEeecCCCe----eEEEeccceEEEEecCc---c---eeeeeeeccCCce--EEEcCC-CCEEEEEecCCeEEE
Q 026679           14 KERVISLCMSPVNDS----FMSGSLDHSVRIWDLRV---N---ACQGILRLRGRPT--VAFDQQ-GLVFAVAMEAGAIKL   80 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~----l~s~~~d~~i~vwd~~~---~---~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~dg~v~i   80 (235)
                      ......++|.+.+..    ||.|..||.|.+||...   +   ..+.....|...+  +.|++. +++|++|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            356788999987755    88899999999999865   2   2344455566555  899995 459999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC-cE
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG-QY  158 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  158 (235)
                      ||+.+.+.....-  .....+.|.+++|+.. ...|++++.+|.+.+||++..+.+..+........+..++|+|+. ..
T Consensus       144 WDlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq  221 (1049)
T KOG0307|consen  144 WDLNKPETPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ  221 (1049)
T ss_pred             eccCCcCCCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence            9999865422111  2234578999999874 456778888999999999999877766666555567889999975 45


Q ss_pred             EEEeCCC---CcEEEEEcCC-CceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCCCC
Q 026679          159 VVSGSGD---GTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       159 l~~~~~d---g~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      |+++++|   -.|.+||+|. ..++.++++|...|.++.|++.+ +++++++  +.+.+|+.++++.
T Consensus       222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv  288 (1049)
T KOG0307|consen  222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV  288 (1049)
T ss_pred             eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE
Confidence            5555554   3599999985 45677888999999999999966 7777777  6799999988654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.8e-20  Score=132.23  Aligned_cols=189  Identities=15%  Similarity=0.200  Sum_probs=145.5

Q ss_pred             CeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC--CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCC-c
Q 026679           27 DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-A  101 (235)
Q Consensus        27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~  101 (235)
                      ..+|++-..|.|++||..+++.+..++.+....  +.|..  ....+.+|+.||+|++||++.....+  .+....+. .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a--~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA--RISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--heeccCCCCC
Confidence            458888889999999999999999998887554  77766  56789999999999999999876533  33344444 5


Q ss_pred             ceeEEEEccCCCeEEEecC----CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEEeCCCCcEEEEEcCCC
Q 026679          102 EVCDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTR  176 (235)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~  176 (235)
                      +..+++....++.+++|..    +-.|.+||+|..+.....-...|...|+++.|+| +.++|++|+.||.+.+||++..
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            6677777767777877764    6779999999987733333466778899999999 5789999999999999999754


Q ss_pred             ce---eeeecCCCcceeEEEeecCC--CEEEEcc-cceEEeeCCCCC
Q 026679          177 NE---VACWNGNIGVVACLKWAPRR--AMFVAAS-SVLSFWIPNPSS  217 (235)
Q Consensus       177 ~~---~~~~~~~~~~v~~~~~~~~~--~~l~~~~-~~i~iw~~~~~~  217 (235)
                      ..   +...-.|...|..+.|..++  +...... ++..+|+++...
T Consensus       199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            32   22333477889999999887  4333333 999999997665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.1e-20  Score=136.57  Aligned_cols=195  Identities=11%  Similarity=0.124  Sum_probs=143.3

Q ss_pred             eEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEe
Q 026679           18 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL   95 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~   95 (235)
                      .+++|+++|..+++++.||++|||+......+.....+...  .+.|+|||+.|++-+.| ..++|+.+++..  .....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~--~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA--LARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch--hhhcC
Confidence            78999999999999999999999997776666655555544  49999999999999999 999999998743  11111


Q ss_pred             ecCCCcceeEEEEccCC---CeEE--EecCCCcEEEEEcCCCce---eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc
Q 026679           96 VGGDTAEVCDIKFSNDG---KSML--LTTTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT  167 (235)
Q Consensus        96 ~~~~~~~v~~~~~~~~~---~~l~--~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  167 (235)
                      -...+.....+.|+.|+   .+++  .....+.|..||+...+.   .+..+.-.....|++++.+++|++++.|+.||.
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs  304 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS  304 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence            12333445667787766   3222  233456677776644322   111111122246999999999999999999999


Q ss_pred             EEEEEcCCCceeeee-cCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          168 LHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       168 i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      |.|++..+.+.++.. +.|...|+.+.|+|+.+++++.+  ....+..+..
T Consensus       305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999888877655 47889999999999999998876  4466665543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=9.8e-21  Score=145.53  Aligned_cols=203  Identities=18%  Similarity=0.274  Sum_probs=155.3

Q ss_pred             ccccceeEEEeecC-----------CCeeEEEeccceEEEEecCcceeeeeeec--------------------------
Q 026679           12 GHKERVISLCMSPV-----------NDSFMSGSLDHSVRIWDLRVNACQGILRL--------------------------   54 (235)
Q Consensus        12 ~h~~~v~~~~~~~~-----------~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--------------------------   54 (235)
                      -|+..|+.+.--|.           ...|+|++.|++||+||++.+..-..+..                          
T Consensus       367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~  446 (1080)
T KOG1408|consen  367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG  446 (1080)
T ss_pred             eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence            47777777766551           23589999999999999875211111100                          


Q ss_pred             -------------cCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc---CCCeEEEe
Q 026679           55 -------------RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN---DGKSMLLT  118 (235)
Q Consensus        55 -------------~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~  118 (235)
                                   .+..+++++|+|++|++|..-|++++|++.+.+.    ...+..|...|.|+.++.   ..++|+++
T Consensus       447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~----~~~~eAHesEilcLeyS~p~~~~kLLASa  522 (1080)
T KOG1408|consen  447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY----TCFMEAHESEILCLEYSFPVLTNKLLASA  522 (1080)
T ss_pred             cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh----hhheecccceeEEEeecCchhhhHhhhhc
Confidence                         0234589999999999999999999999998765    667889999999999985   34678999


Q ss_pred             cCCCcEEEEEcCCCceeeeeccCC-------------------------------------------------CCCccee
Q 026679          119 TTNNNIYVLDAYGGEKRCGFSLEP-------------------------------------------------SPNTNTE  149 (235)
Q Consensus       119 ~~d~~i~~~d~~~~~~~~~~~~~~-------------------------------------------------~~~~i~~  149 (235)
                      +.|.-|++||+...-.+. ..+..                                                 ....+..
T Consensus       523 srdRlIHV~Dv~rny~l~-qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD  601 (1080)
T KOG1408|consen  523 SRDRLIHVYDVKRNYDLV-QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD  601 (1080)
T ss_pred             cCCceEEEEecccccchh-hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence            999999999985321100 00111                                                 1145667


Q ss_pred             eEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecC---CCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          150 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG---NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       150 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      |+..|..+++++++.|..|+|||+.+++..+.|++   |.+..-.+...|.|.|+++..  .++.++|+-+++..
T Consensus       602 m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv  676 (1080)
T KOG1408|consen  602 MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV  676 (1080)
T ss_pred             eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh
Confidence            78888888999999999999999999999999874   567788899999999999987  78999999776544

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=2.4e-20  Score=140.43  Aligned_cols=205  Identities=16%  Similarity=0.280  Sum_probs=158.4

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCC--EEEEEecCCeEEEEecc
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGL--VFAVAMEAGAIKLFDSR   84 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~--~l~~~~~dg~v~i~d~~   84 (235)
                      ..++||++.|.++...|.|.+|++|+.||+|+||.+.++.++..+.... +.+++|+|.+.  +||++.... +.+-+..
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~  472 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPI  472 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCcc
Confidence            4578999999999999999999999999999999999999999998776 55699999664  444444333 4443321


Q ss_pred             CC---------------------------------CCCCceeEeecCCCcceeEEEEccCCCeEEEecC---CCcEEEEE
Q 026679           85 SY---------------------------------DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLD  128 (235)
Q Consensus        85 ~~---------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d  128 (235)
                      -+                                 +...........|...|..+.|+..|.+|++...   ...|.+++
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ  552 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ  552 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence            11                                 0001112233457788999999999999999765   35699999


Q ss_pred             cCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--c
Q 026679          129 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S  206 (235)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~  206 (235)
                      +........|.  ...+.+.++.|+|...+|++++.. .|++||+...+.+..+......|..++.+|.|.-|+.++  +
T Consensus       553 LSK~~sQ~PF~--kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~  629 (733)
T KOG0650|consen  553 LSKRKSQSPFR--KSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK  629 (733)
T ss_pred             cccccccCchh--hcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence            98766554443  344669999999999999888765 699999998888888776777899999999999999998  6


Q ss_pred             ceEEeeCCCC
Q 026679          207 VLSFWIPNPS  216 (235)
Q Consensus       207 ~i~iw~~~~~  216 (235)
                      .+..+|++..
T Consensus       630 k~~WfDldls  639 (733)
T KOG0650|consen  630 KMCWFDLDLS  639 (733)
T ss_pred             eeEEEEcccC
Confidence            6888888754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=8.3e-20  Score=135.09  Aligned_cols=158  Identities=21%  Similarity=0.366  Sum_probs=128.6

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee-ccCCceEEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR-LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~   86 (235)
                      ....+|.+..+.++.+|+.+.++|++.|+.+++|+  ..+.+.... .....++.|+|.| .++.|...|...+.|.++.
T Consensus       362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~  438 (626)
T KOG2106|consen  362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ  438 (626)
T ss_pred             EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccc
Confidence            34568999999999999999999999999999999  444444433 3445679999999 9999999999999999884


Q ss_pred             CCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG  166 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  166 (235)
                      ..     ........++++++|+|+|.+|+.|+.|+.|++|-+..+..........+..+|+.+.|++|+++|.+-+.|-
T Consensus       439 ~l-----v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~  513 (626)
T KOG2106|consen  439 DL-----VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDY  513 (626)
T ss_pred             ee-----EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCce
Confidence            42     3333337899999999999999999999999999987654433333333337899999999999999999999


Q ss_pred             cEEEEEc
Q 026679          167 TLHAWNI  173 (235)
Q Consensus       167 ~i~v~d~  173 (235)
                      .|..|..
T Consensus       514 eiLyW~~  520 (626)
T KOG2106|consen  514 EILYWKP  520 (626)
T ss_pred             EEEEEcc
Confidence            9999953

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.86  E-value=6.2e-21  Score=130.31  Aligned_cols=144  Identities=15%  Similarity=0.221  Sum_probs=114.8

Q ss_pred             EEEEEecCCeEEEEeccCCCCCC------ceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC--cee--ee
Q 026679           68 VFAVAMEAGAIKLFDSRSYDKGP------FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR--CG  137 (235)
Q Consensus        68 ~l~~~~~dg~v~i~d~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~--~~  137 (235)
                      ++++|.++|.+.+||+.++...-      ........|..+|.++.+.+.-..=+.++.+..+..|++...  ...  ..
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e  246 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE  246 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence            46778889999999999863210      112334467889999999986666677888888999988643  221  12


Q ss_pred             eccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          138 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      ..+.  ...+..+.+-||++.+|+++.|+.|+||..++.+++..++-|...|.+++|+|+...+++++  ..|.+|++
T Consensus       247 ~~lk--npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  247 ITLK--NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEec--CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            2222  23478899999999999999999999999999999999999999999999999999999998  66999985

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=4.4e-20  Score=130.27  Aligned_cols=212  Identities=15%  Similarity=0.236  Sum_probs=148.7

Q ss_pred             chhhhhhhhcccccceeEEEeecC--CCeeEEEeccceEEEEecCcceeeeeeeccCCc---eEEE--cCCCCEEEEEec
Q 026679            2 YDNRILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP---TVAF--DQQGLVFAVAME   74 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~--~~~~~~l~~~~~   74 (235)
                      .+++.++.|++|...++.+.|..+  ...+.+|+.||+|++||++.......+.....+   ..++  .-.++.+++|..
T Consensus        58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE  137 (376)
T KOG1188|consen   58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTE  137 (376)
T ss_pred             cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccc
Confidence            467899999999999999999873  467999999999999999987666555433322   2444  446778888753


Q ss_pred             ----CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCcee-eeeccCCCCCcce
Q 026679           75 ----AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKR-CGFSLEPSPNTNT  148 (235)
Q Consensus        75 ----dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~  148 (235)
                          +-.+.+||++..+..  .......|...|+++.|+| +.+.|++|+.||-|.+||+.....- .....-.+...|.
T Consensus       138 ~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~  215 (376)
T KOG1188|consen  138 LTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIH  215 (376)
T ss_pred             cccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceee
Confidence                678999999986641  2333467889999999999 6788999999999999998754211 1111112334467


Q ss_pred             eeEEeCCC-cEEEEeCCCCcEEEEEcCCCce-------------------------------------------------
Q 026679          149 EATFTPDG-QYVVSGSGDGTLHAWNINTRNE-------------------------------------------------  178 (235)
Q Consensus       149 ~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~-------------------------------------------------  178 (235)
                      ++.|..++ +.|.+-+......+|+++.+..                                                 
T Consensus       216 ~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~  295 (376)
T KOG1188|consen  216 LIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFP  295 (376)
T ss_pred             eeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEE
Confidence            77776655 3355555566666676654321                                                 


Q ss_pred             ------------eeeecC-CCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          179 ------------VACWNG-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       179 ------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                                  +..+.+ |...|+++.|...+.++.+|+  |.+.+|..+.
T Consensus       296 ~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  296 LVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             eeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence                        122233 445677777877888999998  7899998543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.86  E-value=3.7e-19  Score=131.71  Aligned_cols=199  Identities=15%  Similarity=0.242  Sum_probs=152.9

Q ss_pred             hhcccc-cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC
Q 026679            9 YFKGHK-ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus         9 ~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      .|+.++ ..|.|++|.++|. ++||..+|.|.||+..+.+..+....|...+  ++.-.+|.++- |+.|+.|..||-.-
T Consensus       240 ~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y  317 (626)
T KOG2106|consen  240 IFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY  317 (626)
T ss_pred             ccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccc
Confidence            344433 6799999999875 8899999999999998887777666777555  66666776555 99999999998321


Q ss_pred             CCCC------------------------------------CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEc
Q 026679           86 YDKG------------------------------------PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA  129 (235)
Q Consensus        86 ~~~~------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  129 (235)
                      .+..                                    ........+|......++.+|+.+.+++++.|+.+++|+ 
T Consensus       318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-  396 (626)
T KOG2106|consen  318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-  396 (626)
T ss_pred             cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-
Confidence            1100                                    001122335667788899999999999999999999999 


Q ss_pred             CCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cc
Q 026679          130 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SV  207 (235)
Q Consensus       130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~  207 (235)
                       ..++.......   .++.++.|+|.| .+|.|+..|...+.|..+...+..-.. ..+++.++|+|+|.+|+.|+  +.
T Consensus       397 -~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~  470 (626)
T KOG2106|consen  397 -DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH  470 (626)
T ss_pred             -CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe
Confidence             44444333332   458899999999 999999999999999988666555444 78999999999999999999  66


Q ss_pred             eEEeeCCCC
Q 026679          208 LSFWIPNPS  216 (235)
Q Consensus       208 i~iw~~~~~  216 (235)
                      |+||.++..
T Consensus       471 iyiy~Vs~~  479 (626)
T KOG2106|consen  471 IYIYRVSAN  479 (626)
T ss_pred             EEEEEECCC
Confidence            999988643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=5.1e-20  Score=132.62  Aligned_cols=122  Identities=13%  Similarity=0.153  Sum_probs=101.4

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC--------c--------ceeeeeeeccCCce--EEEcCCCC
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR--------V--------NACQGILRLRGRPT--VAFDQQGL   67 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--------~--------~~~~~~~~~~~~~~--~~~~~~~~   67 (235)
                      .+..|..|.+.|+++.|+|+|+.||+|+.+|.|.+|...        +        ......+.+|...+  ++|+|++.
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~  136 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN  136 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence            456788999999999999999999999999999999765        2        11233344444444  99999999


Q ss_pred             EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC
Q 026679           68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG  131 (235)
Q Consensus        68 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~  131 (235)
                      .+++++-|..+++||+..++.    ......|...+..++|.|-++++++-+.|...+.+.+..
T Consensus       137 ~l~s~s~dns~~l~Dv~~G~l----~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  137 FLVSGSVDNSVRLWDVHAGQL----LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             eeeeeeccceEEEEEecccee----EeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence            999999999999999998876    667788999999999999999999988888766666543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=1.1e-19  Score=127.72  Aligned_cols=198  Identities=18%  Similarity=0.260  Sum_probs=148.6

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcc------------eeeeeeeccC-Cce--EEE-------cCCCCEEEEEe
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVN------------ACQGILRLRG-RPT--VAF-------DQQGLVFAVAM   73 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~------------~~~~~~~~~~-~~~--~~~-------~~~~~~l~~~~   73 (235)
                      -...+.|+|||..|++-+.|..+.+|++...            +....++... ..+  .+|       .|+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            3456899999999999999999999997421            0111122111 222  333       36778999999


Q ss_pred             cCCeEEEEeccCCCCCCceeEeecCCCc---ceeEEEEccCCCeEEEecCCCcEEEEEc-CCCceeeeeccCCC-----C
Q 026679           74 EAGAIKLFDSRSYDKGPFDTFLVGGDTA---EVCDIKFSNDGKSMLLTTTNNNIYVLDA-YGGEKRCGFSLEPS-----P  144 (235)
Q Consensus        74 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~i~~~d~-~~~~~~~~~~~~~~-----~  144 (235)
                      .+.-|++||.-+++...  .+....|..   ...+++|+|||.+|++| ....|++||+ |.|.....+....+     .
T Consensus       131 r~~PIh~wdaftG~lra--Sy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~  207 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRA--SYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK  207 (406)
T ss_pred             ccCceeeeecccccccc--chhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccc
Confidence            99999999999887522  222223333   34589999999988865 5678999999 66654433332222     4


Q ss_pred             CcceeeEEeC-CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCC
Q 026679          145 NTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS  216 (235)
Q Consensus       145 ~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~  216 (235)
                      +-+.+++|+| +...+++|+....+-+|.-..+.++..+-+|.+.|+.+.|.++|+.|.+|+   ..|-.||++..
T Consensus       208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence            6788999999 455899999999999998889999999999999999999999999999998   44999999754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=2.8e-19  Score=138.35  Aligned_cols=202  Identities=16%  Similarity=0.189  Sum_probs=136.1

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEecc---ceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEe-cCCeEEEE
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAM-EAGAIKLF   81 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~dg~v~i~   81 (235)
                      .+.+..|...+.+.+|+|+|+.|+.++.+   ..|++||+.+++......... ....+|+|+|+.|+.+. .+|.+.+|
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  275 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIY  275 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEE
Confidence            45566788889999999999999887654   369999998876433322222 23489999999888765 67876666


Q ss_pred             --eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCCCc
Q 026679           82 --DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        82 --d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                        |+.+..     ...+..+...+....|+|||+.|+..+ .++...+|++.... .....   .+..  ....|+|+|+
T Consensus       276 ~~d~~~~~-----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~~~--~~~~~SpDG~  345 (429)
T PRK01742        276 VMGANGGT-----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GGRG--YSAQISADGK  345 (429)
T ss_pred             EEECCCCC-----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cCCC--CCccCCCCCC
Confidence              554433     233444556678899999999877665 46777888764322 12222   1222  3478999999


Q ss_pred             EEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee---CCCCCCCCC
Q 026679          158 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI---PNPSSNSTD  221 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~---~~~~~~~~~  221 (235)
                      +|+..+.++ +.+||+.+++.......+  ....+.|+|+|++|+.++  +...+|.   .++.....+
T Consensus       346 ~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l  411 (429)
T PRK01742        346 TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL  411 (429)
T ss_pred             EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence            998887765 666999888754322222  345678999999999886  5555554   444444444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=3e-19  Score=136.67  Aligned_cols=211  Identities=16%  Similarity=0.254  Sum_probs=161.4

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc--------eeeeeeecc------------------
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--------ACQGILRLR------------------   55 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--------~~~~~~~~~------------------   55 (235)
                      .+|.+++.+++|.+.|.|++|+.||+.+|+|+.|..|.+|+.+-.        ..++.....                  
T Consensus        41 ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS  120 (1081)
T KOG1538|consen   41 SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWS  120 (1081)
T ss_pred             CCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccC
Confidence            468899999999999999999999999999999999999986421        111111110                  


Q ss_pred             -----------C--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCC-----CeEEE
Q 026679           56 -----------G--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-----KSMLL  117 (235)
Q Consensus        56 -----------~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~  117 (235)
                                 .  ..+++|..||.+++.|-.+|+|.+-+.....  ........+.+++|.+++|+|..     ..+++
T Consensus       121 ~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe--k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV  198 (1081)
T KOG1538|consen  121 PEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE--KVKIERPGGSNSPIWSICWNPSSGEGRNDILAV  198 (1081)
T ss_pred             hhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc--ceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence                       0  1137889999999999999999987654332  22333445678899999999953     46777


Q ss_pred             ecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecC
Q 026679          118 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR  197 (235)
Q Consensus       118 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  197 (235)
                      .....++.+|.+.....-+...+.   -...|+.+.|+|.+++.|+.|+.+.+|. +.|-.+.++......|+.++..|+
T Consensus       199 ~DW~qTLSFy~LsG~~Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PN  274 (1081)
T KOG1538|consen  199 ADWGQTLSFYQLSGKQIGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPN  274 (1081)
T ss_pred             EeccceeEEEEecceeecccccCC---CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccC
Confidence            888888888887543322222222   2356789999999999999999999997 577777777767789999999999


Q ss_pred             CCEEEEcc--cceEEeeCCCCCC
Q 026679          198 RAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       198 ~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      +++++.|+  |++..|++-..+.
T Consensus       275 sQ~v~~GCqDGTiACyNl~fSTV  297 (1081)
T KOG1538|consen  275 SQYVVVGCQDGTIACYNLIFSTV  297 (1081)
T ss_pred             CceEEEEEccCeeehhhhHHhHh
Confidence            99999998  8899998765443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.84  E-value=9.4e-18  Score=119.81  Aligned_cols=197  Identities=12%  Similarity=0.213  Sum_probs=145.3

Q ss_pred             ceeEEEeecCCCeeEEEeccc--eEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCcee
Q 026679           16 RVISLCMSPVNDSFMSGSLDH--SVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT   93 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~   93 (235)
                      .|.-+-|+  ..++|..+.+.  .+++.+++.+..+..+..+. .++++--+-+.|+++-.+. |+|||+++.+.... .
T Consensus        48 ~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt-~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhT-I  122 (391)
T KOG2110|consen   48 SIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT-SILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHT-I  122 (391)
T ss_pred             EEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEecCC-ceEEEEEccceEEEEEccc-EEEEecccceeehh-h
Confidence            34455555  34555555443  48888887777766665543 2344444556777777664 99999998775111 1


Q ss_pred             EeecCCCcceeEEEEccCCCeEEEec--CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc-EEE
Q 026679           94 FLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-LHA  170 (235)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~v  170 (235)
                      .....+...+.++++++.+.+++.-+  ..|.|.+||+.+-+....+.  .|.+.+.+++|+++|.+||++++.|+ |||
T Consensus       123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRV  200 (391)
T KOG2110|consen  123 ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRV  200 (391)
T ss_pred             hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence            12224556677777777777888754  37899999999888776655  67788999999999999999999997 889


Q ss_pred             EEcCCCceeeeecCC--CcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          171 WNINTRNEVACWNGN--IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       171 ~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      +.+.+|+.+.++..-  ...|.+++|+|++.+|++.+  ++|.++.++.....
T Consensus       201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~  253 (391)
T KOG2110|consen  201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNN  253 (391)
T ss_pred             EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccC
Confidence            999999999998643  34789999999999999888  78999999766533

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.2e-18  Score=118.17  Aligned_cols=202  Identities=14%  Similarity=0.152  Sum_probs=149.1

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCccee---------------eeeeeccCCceEEEcCCCCEEEEE
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC---------------QGILRLRGRPTVAFDQQGLVFAVA   72 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~~~   72 (235)
                      -..++|.++|..++|.  ..+|++|+ ||.|+=|..+....               ....+.+.++.+.+.|..+-++.+
T Consensus        56 v~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A  132 (325)
T KOG0649|consen   56 VPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA  132 (325)
T ss_pred             eeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Confidence            3458999999999998  45777776 59999887643211               112334456668889988777777


Q ss_pred             ecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC--------
Q 026679           73 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP--------  144 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------  144 (235)
                      +.|+.++-||+++++.    ...+.+|...+.++.--.....+++|++||++++||.++++.++.+....++        
T Consensus       133 gGD~~~y~~dlE~G~i----~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g  208 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDGRI----QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG  208 (325)
T ss_pred             cCCeEEEEEEecCCEE----EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence            8999999999999875    7788999999999988555556999999999999999999988877654433        


Q ss_pred             CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEc-ccceEEeeCCCCCCCCC
Q 026679          145 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA-SSVLSFWIPNPSSNSTD  221 (235)
Q Consensus       145 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~i~iw~~~~~~~~~~  221 (235)
                      ..|.++  .-+..+|++|+. ..+.+|.++..++...+. -..++..+.|..| ..++.| ++.+.-|.+.+......
T Consensus       209 ~wigal--a~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~Gvl~a~i  281 (325)
T KOG0649|consen  209 KWIGAL--AVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFVDD-CVLIGGEGNHVQSYTLNGVLQANI  281 (325)
T ss_pred             ceeEEE--eccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeeecc-eEEEeccccceeeeeeccEEEEec
Confidence            234444  445668887765 468999999999888876 4467888888654 344444 35688888776443333

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=9.3e-19  Score=121.32  Aligned_cols=204  Identities=14%  Similarity=0.211  Sum_probs=149.8

Q ss_pred             hhhhhhhc-ccccceeEEEeecCCCeeEEEeccceEEEEecCccee-eeeeeccC-------CceEEEcC--CCCEEEEE
Q 026679            4 NRILRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-QGILRLRG-------RPTVAFDQ--QGLVFAVA   72 (235)
Q Consensus         4 ~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~-------~~~~~~~~--~~~~l~~~   72 (235)
                      -+++..+. .+-+.|.|+.|.|++..+++-. |..|.+|+++.... ...+....       ...-+|+|  +++.+++.
T Consensus       112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt  190 (370)
T KOG1007|consen  112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT  190 (370)
T ss_pred             hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence            35566665 4667999999999998888876 78899999987765 33333221       22367888  66666554


Q ss_pred             ecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCC-eEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeE
Q 026679           73 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT  151 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~  151 (235)
                       .|+++..||+++...   .......|...|..+.|+|+.+ +|+++++||.|++||.|.-+. ....+++|...+.++.
T Consensus       191 -~d~tl~~~D~RT~~~---~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-pv~el~~HsHWvW~VR  265 (370)
T KOG1007|consen  191 -SDSTLQFWDLRTMKK---NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-PVQELPGHSHWVWAVR  265 (370)
T ss_pred             -CCCcEEEEEccchhh---hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-cccccCCCceEEEEEE
Confidence             578999999998664   1222346777899999999765 577889999999999987553 2446677888999999


Q ss_pred             EeCC-CcEEEEeCCCCcEEEEEcCCC-----------------------------ceeeeecCCCcceeEEEeecCCCEE
Q 026679          152 FTPD-GQYVVSGSGDGTLHAWNINTR-----------------------------NEVACWNGNIGVVACLKWAPRRAMF  201 (235)
Q Consensus       152 ~~~~-~~~l~~~~~dg~i~v~d~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l  201 (235)
                      |+|. .++|++|+.|..+.+|....-                             ..+.++..|...|++++|+.-..++
T Consensus       266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi  345 (370)
T KOG1007|consen  266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI  345 (370)
T ss_pred             ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence            9994 677889999999999875321                             1234566789999999999877766


Q ss_pred             EEc-c--cceEEeeC
Q 026679          202 VAA-S--SVLSFWIP  213 (235)
Q Consensus       202 ~~~-~--~~i~iw~~  213 (235)
                      .++ +  |.+.|=.+
T Consensus       346 FASLSYDGRviIs~V  360 (370)
T KOG1007|consen  346 FASLSYDGRVIISSV  360 (370)
T ss_pred             EEEeccCceEEeecC
Confidence            554 4  55555443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=1e-19  Score=131.11  Aligned_cols=191  Identities=16%  Similarity=0.247  Sum_probs=146.8

Q ss_pred             ccceeEEEeecCCC-eeEEEeccceEEEEecCccee---------eeeeeccC--CceEEEcCCCCEEEEEecCCeEEEE
Q 026679           14 KERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNAC---------QGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus        14 ~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~---------~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      ..+|..+.|.++.. .++||+.|..|++|.+..+..         ...+..|.  ++++.|+|+|++|++|+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            36899999999775 999999999999998865422         22334444  4559999999999999999999999


Q ss_pred             eccCC------------CCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCccee
Q 026679           82 DSRSY------------DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE  149 (235)
Q Consensus        82 d~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~  149 (235)
                      -...-            +........+.+|...+..++|+|++.++++++.|..+++||+..|+....+..+  ...+..
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh--~~yvqg  170 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH--EHYVQG  170 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc--ccccce
Confidence            76611            1112234556789999999999999999999999999999999999988766544  455999


Q ss_pred             eEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec--------C-----------C----CcceeEEEeecCCCEEEEccc
Q 026679          150 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--------G-----------N----IGVVACLKWAPRRAMFVAASS  206 (235)
Q Consensus       150 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------~-----------~----~~~v~~~~~~~~~~~l~~~~~  206 (235)
                      ++|.|-++++++-+.|...+.+++...+.+....        .           |    ..-...++|+|+|.++++.+|
T Consensus       171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag  250 (434)
T KOG1009|consen  171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG  250 (434)
T ss_pred             eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence            9999999999999988877777765433221111        0           1    123467889999999998863

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.83  E-value=5.7e-19  Score=122.45  Aligned_cols=204  Identities=15%  Similarity=0.187  Sum_probs=149.4

Q ss_pred             ccccceeEEEeecCC-----CeeEEEeccceEEEEecCcce----eeeeeeccC-------CceEEEcC-CCCEEEEEec
Q 026679           12 GHKERVISLCMSPVN-----DSFMSGSLDHSVRIWDLRVNA----CQGILRLRG-------RPTVAFDQ-QGLVFAVAME   74 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~-----~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~-------~~~~~~~~-~~~~l~~~~~   74 (235)
                      .|.-+++.+.|.|+.     .+|||++  ..+|+|.+...+    +...+..+.       ..+..|+. +.+++.+++-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            578899999999975     3466654  379999986321    111121111       22355655 6688999999


Q ss_pred             CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeeee-ccCCCCCcceeeEE
Q 026679           75 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATF  152 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~i~~~~~  152 (235)
                      |-+..+||++++.. ......+..|...|..++|...+ +.+++.+.||.+++||+|..+.-..+ +......+...++|
T Consensus       172 DTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  172 DTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             cCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            99999999998632 22345677899999999999855 46888999999999999987654333 33332467888999


Q ss_pred             eC-CCcEEEEeCCC-CcEEEEEcCC-CceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCCCC
Q 026679          153 TP-DGQYVVSGSGD-GTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       153 ~~-~~~~l~~~~~d-g~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      ++ |-+++|+-..| ..|.+.|++. ..++..+++|.+.|.+++|.|.. ..|++++  ...-+||+.....
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            88 55677776554 5699999985 56788999999999999999964 5677776  5599999976443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.4e-19  Score=135.46  Aligned_cols=213  Identities=17%  Similarity=0.178  Sum_probs=155.2

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee-ccCCce--EEEcC--CCCEEEEEecCCeEE
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR-LRGRPT--VAFDQ--QGLVFAVAMEAGAIK   79 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~--~~~~~--~~~~l~~~~~dg~v~   79 (235)
                      .+.++|.||++.|+|+.|+.+|.+|++||.|-.+.|||.-..+.++.+. +|..++  +.|-|  +.+.+++|..|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            4567889999999999999999999999999999999998888777775 344444  78888  667899999999999


Q ss_pred             EEeccCCCCC------CceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeee--------eccCCCC
Q 026679           80 LFDSRSYDKG------PFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCG--------FSLEPSP  144 (235)
Q Consensus        80 i~d~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~--------~~~~~~~  144 (235)
                      +||+...+..      .........|...|..++-.|++ ..+.++++||+|+-||++....-..        .......
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            9999863321      12234456788899999999988 7899999999999999986422110        0111112


Q ss_pred             CcceeeEEeCC-CcEEEEeCCCCcEEEEEcCC--------Cc----------eeeee-cCCC-----------cceeEEE
Q 026679          145 NTNTEATFTPD-GQYVVSGSGDGTLHAWNINT--------RN----------EVACW-NGNI-----------GVVACLK  193 (235)
Q Consensus       145 ~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~--------~~----------~~~~~-~~~~-----------~~v~~~~  193 (235)
                      -...++.++|. ..+|++|+.|-..++||.+.        +.          ++.-+ .+|.           ..++-+.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            33567889994 56889999999999999532        11          11111 1221           1256788


Q ss_pred             eecCCCEEEEc-c-cceEEeeCCCCC
Q 026679          194 WAPRRAMFVAA-S-SVLSFWIPNPSS  217 (235)
Q Consensus       194 ~~~~~~~l~~~-~-~~i~iw~~~~~~  217 (235)
                      |+|+|.-|+.. + ..+++++++..+
T Consensus       281 fnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  281 FNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             ECCCCcEEEEeeCCeEEEEEeecCCC
Confidence            99998655544 4 559999987543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=1.3e-17  Score=128.89  Aligned_cols=205  Identities=17%  Similarity=0.206  Sum_probs=139.0

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEec---cceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEE-ecCC--eEEE
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSL---DHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL   80 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~dg--~v~i   80 (235)
                      +.+..+...+.+.+|+|||+.|+..+.   +..+.+|++.+++......... ....+|+|||+.|+.. ..+|  .|.+
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~  271 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  271 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence            444456678899999999998886543   4579999998876544433333 2348999999988765 3444  5888


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC-C--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      ||+.++..     ..+..+...+....|+|||+.|+..+.+ +  .|+.+|+.+++... +....  .......|+|||+
T Consensus       272 ~d~~tg~~-----~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~--~~~~~~~~SpDG~  343 (429)
T PRK03629        272 MDLASGQI-----RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEG--SQNQDADVSSDGK  343 (429)
T ss_pred             EECCCCCE-----EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCC--CCccCEEECCCCC
Confidence            99877543     2233334567789999999988877654 3  46666776665432 22222  2355689999999


Q ss_pred             EEEEeCCC---CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--c---ceEEeeCCCCCCCCCC
Q 026679          158 YVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S---VLSFWIPNPSSNSTDE  222 (235)
Q Consensus       158 ~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~---~i~iw~~~~~~~~~~~  222 (235)
                      +|+..+.+   ..|.+||+.+++.. .+... .......|+|||++|+.++  +   .+.++++++.....+.
T Consensus       344 ~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~  414 (429)
T PRK03629        344 FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  414 (429)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence            99876543   35888999877643 33321 2345678999999998886  2   3778888776655554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.82  E-value=3.3e-19  Score=135.72  Aligned_cols=197  Identities=16%  Similarity=0.203  Sum_probs=141.7

Q ss_pred             cceeEEEeec-CCCeeEEEeccceEEEEecCcc-------eeeeeeeccCC--ceEEEcC-CCCEEEEEecCCeEEEEec
Q 026679           15 ERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVN-------ACQGILRLRGR--PTVAFDQ-QGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus        15 ~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~--~~~~~~~-~~~~l~~~~~dg~v~i~d~   83 (235)
                      ..|+.+.|.| |...||.++.||.|++|.+..+       .....+..|..  ..+.|+| -...|++++.|.+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            5799999999 6688999999999999998654       23444555554  4499999 5678999999999999999


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCcee-eeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR-CGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      .+...    ...+.+|...|..++|+|+|+.+++.+.||+|++|..++++.. +.-..... ..-..+.|.-+|+++++.
T Consensus       708 ~~~~~----~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg-tRgARi~wacdgr~viv~  782 (1012)
T KOG1445|consen  708 ANAKL----YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVG-TRGARILWACDGRIVIVV  782 (1012)
T ss_pred             hhhhh----hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCcc-CcceeEEEEecCcEEEEe
Confidence            99876    6678899999999999999999999999999999999876543 22121111 334568899999999887


Q ss_pred             CCC----CcEEEEEcCCC--ceeeeecCC-CcceeEEEeecCCCEEEEcc-cc--eEEeeCCCC
Q 026679          163 SGD----GTLHAWNINTR--NEVACWNGN-IGVVACLKWAPRRAMFVAAS-SV--LSFWIPNPS  216 (235)
Q Consensus       163 ~~d----g~i~v~d~~~~--~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~~--i~iw~~~~~  216 (235)
                      +.|    ..|.+||..+.  ..+.+..-. ...+.--.+.+|...|...+ |+  +.+|.+-..
T Consensus       783 Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  783 GFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             cccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence            765    45888887643  333322111 11122223455666655554 44  777776443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=5.1e-19  Score=127.29  Aligned_cols=162  Identities=14%  Similarity=0.186  Sum_probs=133.1

Q ss_pred             eeeccCCce--EEEcC-CCCEEEEEecCCeEEEEeccCCCCCC---ceeEeecCCCcceeEEEEccC-CCeEEEecCCCc
Q 026679           51 ILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGP---FDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNN  123 (235)
Q Consensus        51 ~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~  123 (235)
                      .+.+|..++  ++|+| +...+|+|+.|.+|.+|++.......   .....+.+|...|..++|+|. .+.|++++.|..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            344566666  88999 77889999999999999987644321   235667899999999999995 567889999999


Q ss_pred             EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCc-ceeEEEeecCCCEEE
Q 026679          124 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRAMFV  202 (235)
Q Consensus       124 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~  202 (235)
                      |.+|++.+++.+..+.   |+..|.++.|+-||.+|++.+.|..|+|||.++++.+..-.+|.+ .-..+.|-.++.++.
T Consensus       156 v~iWnv~tgeali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT  232 (472)
T ss_pred             EEEEeccCCceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence            9999999999776544   778899999999999999999999999999999999988888865 556677888998555


Q ss_pred             Ecc-----cceEEeeCCC
Q 026679          203 AAS-----SVLSFWIPNP  215 (235)
Q Consensus       203 ~~~-----~~i~iw~~~~  215 (235)
                      +|-     ..+-+||.+.
T Consensus       233 TGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNN  250 (472)
T ss_pred             eccccccccceeccCccc
Confidence            552     4599998764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.82  E-value=3.4e-18  Score=138.30  Aligned_cols=218  Identities=20%  Similarity=0.276  Sum_probs=160.9

Q ss_pred             hhhhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcc-------eeeeeeeccC--CceEEEcCCCCEEEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVN-------ACQGILRLRG--RPTVAFDQQGLVFAVA   72 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~--~~~~~~~~~~~~l~~~   72 (235)
                      +|.++..+..|+..|..++.++.. .+|+|||.||+|++||.+.-       +...++...+  ..++...+.+..+|++
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            477889999999999999998765 89999999999999998642       2223333222  3347888899999999


Q ss_pred             ecCCeEEEEeccCCCCCCce-----eEeecCCCcceeEEEEcc-CCC-eEEEecCCCcEEEEEcCCCceeeeeccCCCCC
Q 026679           73 MEAGAIKLFDSRSYDKGPFD-----TFLVGGDTAEVCDIKFSN-DGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN  145 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~-~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  145 (235)
                      +.||.|++.++.........     ..........|..-++.. .+. .++.+..-+.|..||.+........+.....+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            99999999998763221110     111111122233334433 233 67888889999999999888777777777778


Q ss_pred             cceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-CCCcceeEEEeecCC---CEEEEcc----cceEEeeCCCCC
Q 026679          146 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPRR---AMFVAAS----SVLSFWIPNPSS  217 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~---~~l~~~~----~~i~iw~~~~~~  217 (235)
                      .|++++.+|.+++++.|+..|.+.+||++=+.++..+. .+..+|..+..+|-.   ...++++    +.+.+|++.++.
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            89999999999999999999999999999888888775 334678888877733   4555554    559999998775


Q ss_pred             CCC
Q 026679          218 NST  220 (235)
Q Consensus       218 ~~~  220 (235)
                      .+.
T Consensus      1277 ~~~ 1279 (1431)
T KOG1240|consen 1277 RQT 1279 (1431)
T ss_pred             ceE
Confidence            543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=1.3e-17  Score=129.26  Aligned_cols=207  Identities=20%  Similarity=0.260  Sum_probs=140.8

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEecc---ceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEE-EecCC--e
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAV-AMEAG--A   77 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~-~~~dg--~   77 (235)
                      ...+.+..|...+.+.+|+|||+.|+..+.+   ..|++||+.+++........... ..+|+|+|+.++. .+.+|  .
T Consensus       194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~  273 (433)
T PRK04922        194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPE  273 (433)
T ss_pred             CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence            3344566677789999999999998887643   46999999887665443333333 4899999987764 45555  5


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCc--EEEEEcCCCceeeeeccCCCCCcceeeEEeC
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNN--IYVLDAYGGEKRCGFSLEPSPNTNTEATFTP  154 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~  154 (235)
                      |++||+.+++.     ..+..+.......+|+|||+.|+..+. ++.  |+++|+.+++... +....  ......+|+|
T Consensus       274 Iy~~d~~~g~~-----~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g--~~~~~~~~Sp  345 (433)
T PRK04922        274 IYVMDLGSRQL-----TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQG--NYNARASVSP  345 (433)
T ss_pred             EEEEECCCCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCC--CCccCEEECC
Confidence            88899877553     223334444567899999998887764 444  7777877765433 22222  2244689999


Q ss_pred             CCcEEEEeCCCC---cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCCCC
Q 026679          155 DGQYVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       155 ~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~~~  221 (235)
                      +|++|+..+.++   .|.+||+.+++.. .+. +........|+|||++++..+     +.+.+++.++.....+
T Consensus       346 DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l  418 (433)
T PRK04922        346 DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL  418 (433)
T ss_pred             CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence            999998765432   5999999877654 333 223455679999999888765     3477778776544433

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=1.5e-18  Score=129.58  Aligned_cols=182  Identities=15%  Similarity=0.209  Sum_probs=139.1

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec--cCCceEEEcCCCCEEEEEecCCeEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL--RGRPTVAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      .++..+.+.+|.+.|.|-.|+|+|.-|++++.||.|++|. ++|-...++..  ..+.+++|.|+.+.++.+.. +.+.+
T Consensus        93 ~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~I  170 (737)
T KOG1524|consen   93 SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISI  170 (737)
T ss_pred             cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEE
Confidence            4677788999999999999999999999999999999998 45544444332  33556999998877666544 35555


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      =.+.....    ......|++-|.++.|++..+.+++|++|-..++||.. |..+  +....|..+|++++|.|+ +.++
T Consensus       171 KpL~~n~k----~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~L--f~S~~~ey~ITSva~npd-~~~~  242 (737)
T KOG1524|consen  171 KPLAANSK----IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANL--FTSAAEEYAITSVAFNPE-KDYL  242 (737)
T ss_pred             eecccccc----eeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Cccc--ccCChhccceeeeeeccc-ccee
Confidence            45544333    66788999999999999999999999999999999964 4444  345566678999999999 5555


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEccc
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS  206 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  206 (235)
                      .++.+ +++           --+...+.|..++|++||..++.|.+
T Consensus       243 v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~  276 (737)
T KOG1524|consen  243 LWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTS  276 (737)
T ss_pred             eeeee-eee-----------ecCCCccceEEEEEcCCCceeecccc
Confidence            55432 233           11234578999999999999998873

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=6.2e-18  Score=117.30  Aligned_cols=204  Identities=17%  Similarity=0.240  Sum_probs=147.7

Q ss_pred             hhhcccccceeEEEeecCC-CeeEEEecc-------ceEEEEecCcce---------eeeeee---ccCCceEEEcCCCC
Q 026679            8 RYFKGHKERVISLCMSPVN-DSFMSGSLD-------HSVRIWDLRVNA---------CQGILR---LRGRPTVAFDQQGL   67 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~-~~l~s~~~d-------~~i~vwd~~~~~---------~~~~~~---~~~~~~~~~~~~~~   67 (235)
                      +.|..|.+.|+.++-+|-. +.|+|+..+       ..+.||.+....         ++..+.   .....++.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            4567788999999999955 566666542       246799886432         222232   12346799999999


Q ss_pred             EEEEEecCCeEEEEeccCCCCCCcee--EeecCCCcceeEEEEcc--CCCeEEEecCCCcEEEEEcCCCceeeeeccCCC
Q 026679           68 VFAVAMEAGAIKLFDSRSYDKGPFDT--FLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS  143 (235)
Q Consensus        68 ~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  143 (235)
                      .+++-. |..|.+|++..........  .....+....++-+|+|  +|+.+++ ..|+++..||+|+.+....+. ..|
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~-dAH  213 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIE-DAH  213 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchh-hhh
Confidence            888776 7899999998766421111  11122456678889999  6776655 568899999999877665544 345


Q ss_pred             CCcceeeEEeCCCc-EEEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecC-CCEEEEcc--cceEEeeCC
Q 026679          144 PNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPR-RAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       144 ~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~--~~i~iw~~~  214 (235)
                      ...+..+.|+|+.+ +|++|+.||.|++||.+. ..++.++.+|...|+++.|+|. .+++++++  ..+.+|...
T Consensus       214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            56799999999865 568899999999999985 5678899999999999999995 45566666  447777654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.2e-17  Score=129.46  Aligned_cols=212  Identities=16%  Similarity=0.198  Sum_probs=165.7

Q ss_pred             chhhhhhhhcccccceeEEEeecCC---CeeEEEeccceEEEEecCcceeeeeeecc-----------------------
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVN---DSFMSGSLDHSVRIWDLRVNACQGILRLR-----------------------   55 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-----------------------   55 (235)
                      .+|+++..+.+|..+++.+.+.|..   .++++++.||.|++||...+..++++..+                       
T Consensus        45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~  124 (792)
T KOG1963|consen   45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV  124 (792)
T ss_pred             chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence            5889999999999999999998864   35779999999999997765544433211                       


Q ss_pred             --------------------------------------------------------------------------------
Q 026679           56 --------------------------------------------------------------------------------   55 (235)
Q Consensus        56 --------------------------------------------------------------------------------   55 (235)
                                                                                                      
T Consensus       125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H  204 (792)
T KOG1963|consen  125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH  204 (792)
T ss_pred             ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence                                                                                            


Q ss_pred             --CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc
Q 026679           56 --GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE  133 (235)
Q Consensus        56 --~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  133 (235)
                        ...+.+++|++++++++..||.|.+|.--..+........+.-|...|.+++|+++|.+|++|+..+.+.+|.+.+++
T Consensus       205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence              123478999999999999999999997544222233345566788999999999999999999999999999999988


Q ss_pred             eeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC-----------CcceeEEEeecCCCEEE
Q 026679          134 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-----------IGVVACLKWAPRRAMFV  202 (235)
Q Consensus       134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~  202 (235)
                      ..   -++.-.++|..+.++||+.+.+...+|+.|.+....+.....++.+-           .+-.+.++++|.-+.++
T Consensus       285 kq---fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v  361 (792)
T KOG1963|consen  285 KQ---FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV  361 (792)
T ss_pred             cc---cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence            33   23444577999999999999999999999999998776655544332           33467788999555555


Q ss_pred             Ecc--cceEEeeCCCC
Q 026679          203 AAS--SVLSFWIPNPS  216 (235)
Q Consensus       203 ~~~--~~i~iw~~~~~  216 (235)
                      -.+  +.+.+||+-+.
T Consensus       362 ln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYTD  377 (792)
T ss_pred             ecCCCceEEEEecccc
Confidence            554  88999998654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=5.1e-18  Score=115.09  Aligned_cols=198  Identities=16%  Similarity=0.222  Sum_probs=144.1

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcc----------eeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEE
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN----------ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----------~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      ...|.+-+|+|.+++|++|+.+|.|.+..+..-          ..+...+.|..++  ++|.  ..+|++|+. |.|+-|
T Consensus        10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw   86 (325)
T KOG0649|consen   10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGW   86 (325)
T ss_pred             HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEe
Confidence            356778899999999999999999999987531          2333345666666  5665  455666654 999999


Q ss_pred             eccCCCC----CCceeEeecC-----CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEE
Q 026679           82 DSRSYDK----GPFDTFLVGG-----DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF  152 (235)
Q Consensus        82 d~~~~~~----~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~  152 (235)
                      ..+....    .+........     .--.|+++...|..+.+++++.|+.++.||+++|+....++.  |...+.++.-
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG--HtDYvH~vv~  164 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG--HTDYVHSVVG  164 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC--Ccceeeeeee
Confidence            8765432    1111111111     123578899999888888888999999999999998887765  5566888888


Q ss_pred             eCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC----------CcceeEEEeecCCCEEEEcc-cceEEeeCCCCCC
Q 026679          153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----------IGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSN  218 (235)
Q Consensus       153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~  218 (235)
                      -.....+++|++||++++||.++++.+..+...          ...|.+++  -+..++++|+ ..+.+|.+...+.
T Consensus       165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~  239 (325)
T KOG0649|consen  165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSES  239 (325)
T ss_pred             cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCc
Confidence            666667899999999999999999988776422          12344444  4667888888 6699999976543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=8.5e-18  Score=116.68  Aligned_cols=196  Identities=15%  Similarity=0.256  Sum_probs=144.6

Q ss_pred             ccccceeEEEeec-CCCeeEEEeccceEEEEecCccee---eeeeeccCCce--EEEcCCC-CEEEEEecCCeEEEEecc
Q 026679           12 GHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNAC---QGILRLRGRPT--VAFDQQG-LVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus        12 ~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~~--~~~~~~~-~~l~~~~~dg~v~i~d~~   84 (235)
                      .+..++++..|+. +-+++.++|-|-+..|||++++..   ...+-.|...+  ++|...+ ..|++.+.||.+++||++
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            3567999999987 457899999999999999998732   44455666555  8888854 689999999999999999


Q ss_pred             CCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecC-CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEE
Q 026679           85 SYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVS  161 (235)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  161 (235)
                      ..+... ....-.....+...++|++ |.+++++-.. ...|.+.|+|.... ....+..|.+.|+.++|.| ....|++
T Consensus       228 ~leHST-IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t-pva~L~~H~a~VNgIaWaPhS~~hict  305 (364)
T KOG0290|consen  228 SLEHST-IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT-PVARLRNHQASVNGIAWAPHSSSHICT  305 (364)
T ss_pred             ccccce-EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-ceehhhcCcccccceEecCCCCceeee
Confidence            866411 1121122245777899988 5667776554 45699999987543 2345667778899999999 5678999


Q ss_pred             eCCCCcEEEEEcCCCce------eeeecCCCcceeEEEeec-CCCEEEEcc-cceEE
Q 026679          162 GSGDGTLHAWNINTRNE------VACWNGNIGVVACLKWAP-RRAMFVAAS-SVLSF  210 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~------~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~~i~i  210 (235)
                      ++.|....+||+...-.      +..+. ..+.|..+.|++ ...+++.+. +.+.+
T Consensus       306 aGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kklei  361 (364)
T KOG0290|consen  306 AGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKKLEI  361 (364)
T ss_pred             cCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecCeeeE
Confidence            99999999999975322      22333 457899999996 567787776 44444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=3.9e-17  Score=126.81  Aligned_cols=208  Identities=17%  Similarity=0.183  Sum_probs=141.0

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEec---cceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEE-EEecCCe-
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSL---DHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFA-VAMEAGA-   77 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~~dg~-   77 (235)
                      |...+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.......... ...+|+|+|+.|+ +.+.++. 
T Consensus       191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~  270 (435)
T PRK05137        191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT  270 (435)
T ss_pred             CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence            3444556678889999999999998887764   46899999988866443333322 3489999998776 4455554 


Q ss_pred             -EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-C--CcEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679           78 -IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT  153 (235)
Q Consensus        78 -v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~  153 (235)
                       |.+||+.++..     ..+..+........|+|||+.++..+. +  ..|+++|+.+++.... ...  ...+....|+
T Consensus       271 ~Iy~~d~~~~~~-----~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l-t~~--~~~~~~~~~S  342 (435)
T PRK05137        271 DIYTMDLRSGTT-----TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI-SFG--GGRYSTPVWS  342 (435)
T ss_pred             eEEEEECCCCce-----EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe-ecC--CCcccCeEEC
Confidence             66778776542     233344555677899999999887764 3  3688889876655433 222  2335668899


Q ss_pred             CCCcEEEEeCCC---CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---c-----ceEEeeCCCCCCCCC
Q 026679          154 PDGQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---S-----VLSFWIPNPSSNSTD  221 (235)
Q Consensus       154 ~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~-----~i~iw~~~~~~~~~~  221 (235)
                      |+|++|+....+   ..|.+||+..+.. ..+. ....+..+.|+|||+.|+..+   +     .+.++++++.....+
T Consensus       343 pdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l  419 (435)
T PRK05137        343 PRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV  419 (435)
T ss_pred             CCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence            999999876543   3688889755443 3333 223567889999999987654   1     366777766554443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.81  E-value=1e-17  Score=115.45  Aligned_cols=153  Identities=16%  Similarity=0.407  Sum_probs=109.7

Q ss_pred             EEEcCCCCEEEEEec----------CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEe--cCCCcEEEE
Q 026679           60 VAFDQQGLVFAVAME----------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT--TTNNNIYVL  127 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~~~  127 (235)
                      +.|+|+|+.|++-..          -+...+|.++..+. +.....+. ..++|.+++|+|+|+.+++.  ..++.|.+|
T Consensus        11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen   11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            777888876665433          23566666654432 22233222 33569999999999987654  357799999


Q ss_pred             EcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC---CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEc
Q 026679          128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA  204 (235)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  204 (235)
                      |++ ++.+..+  ..  ..+..+.|+|+|++|++++.   .|.|.+||.++.+.+.... | ..+..++|+|+|++++++
T Consensus        89 d~~-~~~i~~~--~~--~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   89 DVK-GKKIFSF--GT--QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATA  161 (194)
T ss_pred             cCc-ccEeEee--cC--CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEE
Confidence            996 4444433  22  44778999999999998864   4679999999888887765 3 347899999999999998


Q ss_pred             c--------cceEEeeCCCCCCCCC
Q 026679          205 S--------SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       205 ~--------~~i~iw~~~~~~~~~~  221 (235)
                      .        +.++||++.+..+...
T Consensus       162 ~t~~r~~~dng~~Iw~~~G~~l~~~  186 (194)
T PF08662_consen  162 TTSPRLRVDNGFKIWSFQGRLLYKK  186 (194)
T ss_pred             EeccceeccccEEEEEecCeEeEec
Confidence            5        4489999987755443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.81  E-value=6e-17  Score=121.72  Aligned_cols=199  Identities=14%  Similarity=0.147  Sum_probs=132.8

Q ss_pred             ceeEEEeecCCCeeEEEec-cceEEEEecCcc-e---eeeeeecc-CCceEEEcCCCCEEEEEe-cCCeEEEEeccCCCC
Q 026679           16 RVISLCMSPVNDSFMSGSL-DHSVRIWDLRVN-A---CQGILRLR-GRPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDK   88 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~-~---~~~~~~~~-~~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~   88 (235)
                      ....++|+|++++|++++. ++.|.+|++++. .   ....+... ....++++|+++++++++ .++.|.+||+.+...
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence            4568999999998887764 889999999643 2   22222222 233478999998886555 569999999976321


Q ss_pred             CC-c--eeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCC--Cce--eeeeccCC----CCCcceeeEEeCCC
Q 026679           89 GP-F--DTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYG--GEK--RCGFSLEP----SPNTNTEATFTPDG  156 (235)
Q Consensus        89 ~~-~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~--~~~--~~~~~~~~----~~~~i~~~~~~~~~  156 (235)
                      .. .  ..... ........++|+|+|++++++.. ++.|.+|++..  ++.  ...+....    .......+.++|++
T Consensus       161 l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        161 LVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             ccccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            10 0  01111 11234678999999999988876 89999999973  332  22222111    11223468899999


Q ss_pred             cEEEEeCC-CCcEEEEEcCCCceeeeecCC---CcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          157 QYVVSGSG-DGTLHAWNINTRNEVACWNGN---IGVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       157 ~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                      ++|+++.. ++.|.+|++........+.++   ......+.++|+|++|+++.   +.+.+|+++.
T Consensus       240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            99988854 788999998643322222212   23456899999999999876   6799998753

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=1.7e-18  Score=121.84  Aligned_cols=203  Identities=15%  Similarity=0.212  Sum_probs=150.7

Q ss_pred             cccceeEEEeecC----CCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCC-CCEEEEEecCCeEEEEeccC
Q 026679           13 HKERVISLCMSPV----NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQ-GLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus        13 h~~~v~~~~~~~~----~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~dg~v~i~d~~~   85 (235)
                      |.+....++|+-+    ..++|.++.-|.|+|.|+.++++...+.+|+..+  +.++|+ .+++++++.|..|++|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            6777788888764    3478999999999999999999999999988665  999995 47899999999999999998


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeee--------------------------c
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF--------------------------S  139 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--------------------------~  139 (235)
                      ..... ..--..+|...|.++.|+++|.++++++.|.++.+|++...+....+                          .
T Consensus       168 ~~Cv~-VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst  246 (385)
T KOG1034|consen  168 DVCVA-VFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST  246 (385)
T ss_pred             CeEEE-EecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence            76511 11124579999999999999999999999999999999743221111                          1


Q ss_pred             cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc-CCCce-------------eeeecCCCcceeEEE--eecCCCEEEE
Q 026679          140 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI-NTRNE-------------VACWNGNIGVVACLK--WAPRRAMFVA  203 (235)
Q Consensus       140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~-------------~~~~~~~~~~v~~~~--~~~~~~~l~~  203 (235)
                      ...|...|-|+.|  -|+++++-+-++.|..|.. +-++.             +.++.-....|+-+.  |.|-++.|+.
T Consensus       247 ~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~  324 (385)
T KOG1034|consen  247 TDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL  324 (385)
T ss_pred             cccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence            1223345555555  3578999888999999987 21111             223333344555554  4566888888


Q ss_pred             cc--cceEEeeCCCCCC
Q 026679          204 AS--SVLSFWIPNPSSN  218 (235)
Q Consensus       204 ~~--~~i~iw~~~~~~~  218 (235)
                      |.  |.+.+||++....
T Consensus       325 gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  325 GNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             ccCCCcEEEEECCCCCC
Confidence            87  8999999976543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=3.9e-17  Score=126.35  Aligned_cols=206  Identities=19%  Similarity=0.235  Sum_probs=134.7

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEecc---ceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEE-EecCCeE
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAV-AMEAGAI   78 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~dg~v   78 (235)
                      |+..+.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++......... ....+|+|+|+.|+. .+.+|..
T Consensus       185 G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~  264 (427)
T PRK02889        185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNS  264 (427)
T ss_pred             CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCc
Confidence            33344555677889999999999998877643   359999998887654433333 234899999988764 5677877


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEE--EcCCCceeeeeccCCCCCcceeeEEeCC
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVL--DAYGGEKRCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~--d~~~~~~~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      .+|.+......   ...+..+........|+|||+.|+..+. ++...+|  ++.+++... +....  .......|+|+
T Consensus       265 ~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g--~~~~~~~~SpD  338 (427)
T PRK02889        265 QIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTG--SYNTSPRISPD  338 (427)
T ss_pred             eEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCC--CCcCceEECCC
Confidence            77765432211   2223334445567889999998887654 4555555  444444332 22222  22345789999


Q ss_pred             CcEEEEeCCCC---cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---c--ceEEeeCCCCC
Q 026679          156 GQYVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSS  217 (235)
Q Consensus       156 ~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~--~i~iw~~~~~~  217 (235)
                      |++|+..+.++   .|.+||+.+++... +... .......|+|||+.|+.++   +  .+.+.+.++..
T Consensus       339 G~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~  406 (427)
T PRK02889        339 GKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI  406 (427)
T ss_pred             CCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence            99998766544   59999998876543 3222 3346789999999998876   2  25555665443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.80  E-value=1e-19  Score=141.91  Aligned_cols=206  Identities=17%  Similarity=0.240  Sum_probs=157.2

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      .-+.++.+.+|.++|.|..|...|.++++|+.|..++||.+++..+.....+|...+  ++.+.+..++++++.|..|++
T Consensus       179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence            346788899999999999999999999999999999999999999999999998766  888888899999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee--------------ecc------
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG--------------FSL------  140 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--------------~~~------  140 (235)
                      |-+..+..    ...+.+|.+.|++++|+|-.    +.+.||++++||.+-.-....              ..+      
T Consensus       259 Wrl~~~~p----vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~  330 (1113)
T KOG0644|consen  259 WRLPDGAP----VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR  330 (1113)
T ss_pred             EecCCCch----HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc
Confidence            99998765    56678999999999999954    678899999999871100000              000      


Q ss_pred             --------CCCCCcceeeEEeCCCcEEE-----------EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEE
Q 026679          141 --------EPSPNTNTEATFTPDGQYVV-----------SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF  201 (235)
Q Consensus       141 --------~~~~~~i~~~~~~~~~~~l~-----------~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  201 (235)
                              .........++|...+-.++           ++-.+..+.+|++.+|..++.+.+|...+..+.++|-...+
T Consensus       331 f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri  410 (1113)
T KOG0644|consen  331 FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI  410 (1113)
T ss_pred             cccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence                    00001111222222222222           33345568899999999999999999999999999966655


Q ss_pred             E-Ecc--cceEEeeCCCC
Q 026679          202 V-AAS--SVLSFWIPNPS  216 (235)
Q Consensus       202 ~-~~~--~~i~iw~~~~~  216 (235)
                      + +++  |...|||+-.+
T Consensus       411 ~msag~dgst~iwdi~eg  428 (1113)
T KOG0644|consen  411 AMSAGYDGSTIIWDIWEG  428 (1113)
T ss_pred             hhhccCCCceEeeecccC
Confidence            4 444  78999998543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=6.6e-18  Score=121.97  Aligned_cols=216  Identities=13%  Similarity=0.119  Sum_probs=157.8

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCc------ceeeeeeeccC---CceEEEcCCCCEEEEEecCC
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV------NACQGILRLRG---RPTVAFDQQGLVFAVAMEAG   76 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~------~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg   76 (235)
                      +.+.+.+|.+.|.++.|+.++++|++|+.|..+++|+++.      .+++.....+.   +-+++|......+++|..++
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            4566789999999999999999999999999999999863      34444443332   33488999999999999999


Q ss_pred             eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCC
Q 026679           77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus        77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      +|.+.|+++.+.  +..+......+.|+.+..+|..+.|++.+.++.|.+||.+..+ ....+-....+.....+.|+|.
T Consensus       128 ~VI~HDiEt~qs--i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  128 TVIKHDIETKQS--IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             eeEeeeccccee--eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence            999999998653  2223333344689999999999999999999999999998765 3333333334455777899995


Q ss_pred             -CcEEEEeCCCCcEEEEEcCCCc-eeeeecCC------CcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCCCC
Q 026679          156 -GQYVVSGSGDGTLHAWNINTRN-EVACWNGN------IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES  223 (235)
Q Consensus       156 -~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~------~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~~~  223 (235)
                       ..+|++.+..+-+-+||.+... .+....+.      ...-.+..|+|+|..+++--  ..-.+||+....+..++.
T Consensus       206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence             5677888888889999987543 22222111      12335778999999888775  334556666554444443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=1.9e-16  Score=119.04  Aligned_cols=206  Identities=14%  Similarity=0.189  Sum_probs=135.9

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEe-ccceEEEEecCc-cee--eeeeeccCCce-EEEcCCCCEEEEEec-CCeEEE
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGS-LDHSVRIWDLRV-NAC--QGILRLRGRPT-VAFDQQGLVFAVAME-AGAIKL   80 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~-~~~--~~~~~~~~~~~-~~~~~~~~~l~~~~~-dg~v~i   80 (235)
                      ++.++ +.+....++++|++++|++++ .++.|.+|+++. +..  .........+. ++++|+++.+++++. ++.+.+
T Consensus        28 ~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v  106 (330)
T PRK11028         28 LQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSV  106 (330)
T ss_pred             eeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEE
Confidence            34443 235577889999999887664 578899999863 332  22233222334 999999998888764 889999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CCCcEEEEEcCCCceeee-----eccCCCCCcceeeEEeC
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCG-----FSLEPSPNTNTEATFTP  154 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~-----~~~~~~~~~i~~~~~~~  154 (235)
                      |++.+........... .+......++++|+++++++++ .++.|.+||+.+...+..     ...... .....+.|+|
T Consensus       107 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~p  184 (330)
T PRK11028        107 SPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHP  184 (330)
T ss_pred             EEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECC
Confidence            9997432111111111 2223466788999999886655 569999999976332211     111112 3357799999


Q ss_pred             CCcEEEEeCC-CCcEEEEEcCC--Cc--eeeeecCC------CcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          155 DGQYVVSGSG-DGTLHAWNINT--RN--EVACWNGN------IGVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       155 ~~~~l~~~~~-dg~i~v~d~~~--~~--~~~~~~~~------~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                      +|++++++.+ ++.|.+|++..  ++  .+..+..+      ......+.++|++++++++.   +.|.+|+++.
T Consensus       185 dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        185 NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            9999988876 89999999973  22  23333211      11233688999999999885   6799999854

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.79  E-value=1.4e-16  Score=122.99  Aligned_cols=206  Identities=27%  Similarity=0.487  Sum_probs=160.5

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEec-cceEEEEecCcceeeeeeeccCCce--EEEcCCCC-EEEEEecCCeEEE
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGL-VFAVAMEAGAIKL   80 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~-~l~~~~~dg~v~i   80 (235)
                      .....+..|...|.+++|+|++..+++++. |+.+++|+...+.....+..+...+  ++++|++. .+++++.|+.+++
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  225 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL  225 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence            455667889999999999999998888885 9999999999888888887765443  88999988 5555589999999


Q ss_pred             EeccCCCCCCceeE-eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce-eeeeccCCCCCcceeeEEeCCCcE
Q 026679           81 FDSRSYDKGPFDTF-LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-RCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        81 ~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      ||......    .. ....|.... ...|+|++..+++++.|+.+++|+.+.... ....  ..|...+.++.|.|++..
T Consensus       226 wd~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~  298 (466)
T COG2319         226 WDLSTGKL----LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSVAFSPDGKL  298 (466)
T ss_pred             EECCCCcE----EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccEEEEEECCCCCE
Confidence            98774332    22 455666664 338999998888999999999999987665 3333  445677999999998888


Q ss_pred             EEEeCCCCcEEEEEcCCCceeeeec--CCCcceeEEEeecCCCEEEEc-c--cceEEeeCCCCC
Q 026679          159 VVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRAMFVAA-S--SVLSFWIPNPSS  217 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~--~~i~iw~~~~~~  217 (235)
                      +++++.|+.+.+||..+........  .|...+..+.|.+++..++.+ .  +.+.+|+.....
T Consensus       299 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            8889889889999998887766665  787789999994332455555 3  668889887655

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.79  E-value=2.6e-17  Score=115.60  Aligned_cols=203  Identities=13%  Similarity=0.102  Sum_probs=159.2

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcc---eeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC-
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN---ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS-   85 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~-   85 (235)
                      --.++|+|.+|++|+..+|.+-....|.||.....   +..+++..|...+  ++|+|..+.|++|+.|..-++|.... 
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            34579999999999999999999999999987654   4567777776544  99999999999999999999999843 


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce--eeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                      +...+  ...+..++...+++.|+|.++.+++|+....|.+|-++..+.  +...........|+++.|+|++-+|++|+
T Consensus        88 ~~Wkp--tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   88 GTWKP--TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             Ceecc--ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence            33222  444556788999999999999999999999999887765432  22222344557799999999999999999


Q ss_pred             CCCcEEEEEcC-----C-------------CceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          164 GDGTLHAWNIN-----T-------------RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       164 ~dg~i~v~d~~-----~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      .|+..+||..-     .             |+++.++....+.+..+.|+|+|..|+-.+  +.+.+=|....
T Consensus       166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            99999998742     1             233444444567899999999999999887  66777776554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.78  E-value=5.5e-17  Score=115.92  Aligned_cols=154  Identities=18%  Similarity=0.312  Sum_probs=125.0

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC---CceEEEcCCC--CEEEEEe--cCCeEEEEeccCCC
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQG--LVFAVAM--EAGAIKLFDSRSYD   87 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~--~~l~~~~--~dg~v~i~d~~~~~   87 (235)
                      .+|.++.++.  ++|+.+=.+ .|+|||+++.+.++++..-.   ...++++++.  .+++.-+  ..|.|.+||..+.+
T Consensus        88 t~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~  164 (391)
T KOG2110|consen   88 TSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ  164 (391)
T ss_pred             CceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence            4566666653  556666554 49999999999988886542   2346776644  4666533  47999999998866


Q ss_pred             CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCc-EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG  166 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  166 (235)
                      .    ......|.+.+.+++|+++|.+||++++.|+ |++|.+.+|+.+.++........|.+++|+|++++|++.+..+
T Consensus       165 ~----v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te  240 (391)
T KOG2110|consen  165 P----VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE  240 (391)
T ss_pred             e----eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC
Confidence            5    5666799999999999999999999999887 7999999999999888766677899999999999999999999


Q ss_pred             cEEEEEcCC
Q 026679          167 TLHAWNINT  175 (235)
Q Consensus       167 ~i~v~d~~~  175 (235)
                      +|++|.+..
T Consensus       241 TVHiFKL~~  249 (391)
T KOG2110|consen  241 TVHIFKLEK  249 (391)
T ss_pred             eEEEEEecc
Confidence            999999863

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.78  E-value=4.1e-16  Score=120.43  Aligned_cols=203  Identities=24%  Similarity=0.451  Sum_probs=161.3

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce-eeeeeeccC---CceEEE-cCCCC-EEEEEec-CCeEEEE
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRG---RPTVAF-DQQGL-VFAVAME-AGAIKLF   81 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~---~~~~~~-~~~~~-~l~~~~~-dg~v~i~   81 (235)
                      .+..|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+....   ...+.+ .+++. .++..+. ++.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            456799999999999999999999999999999998876 556665532   223444 77777 5555444 9999999


Q ss_pred             eccC-CCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-E
Q 026679           82 DSRS-YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-Y  158 (235)
Q Consensus        82 d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  158 (235)
                      +... ..    .......|...+..++|+|++..++.++. ++.+++|++..+.....+..  |...+.+++|+|++. .
T Consensus       140 ~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~  213 (466)
T COG2319         140 DLSTPGK----LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG--HTDPVSSLAFSPDGGLL  213 (466)
T ss_pred             EecCCCe----EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc--CCCceEEEEEcCCcceE
Confidence            9987 32    25667788899999999999998888886 99999999998766665554  557799999999998 5


Q ss_pred             EEEeCCCCcEEEEEcCCCceee-eecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          159 VVSGSGDGTLHAWNINTRNEVA-CWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      +++++.|+.|++||...+.... .+..|.... -..|+|++.++++++  +.+++|+......
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence            5555999999999998788777 678887765 348999998887676  7799999976543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.78  E-value=1.8e-17  Score=116.34  Aligned_cols=199  Identities=14%  Similarity=0.134  Sum_probs=150.3

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC-cce--eeeeeeccC--CceEEEcCCCCEEEEEecCCeEE
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-VNA--CQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~--~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~   79 (235)
                      +..++++.|...|++++|+|..+.|++|+.|..-++|... .+.  +...+...+  ..++.|+|.++.|++|+....|.
T Consensus        46 ~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~is  125 (361)
T KOG1523|consen   46 EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLIS  125 (361)
T ss_pred             eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEE
Confidence            4567889999999999999999999999999999999983 332  222333222  45599999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC------------------CceeeeeccC
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG------------------GEKRCGFSLE  141 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~------------------~~~~~~~~~~  141 (235)
                      +|-.+..+.--........+.+.|.+++|+|++-+|++|+.|+..++|...-                  |+...+  ..
T Consensus       126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E--~~  203 (361)
T KOG1523|consen  126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE--AS  203 (361)
T ss_pred             EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh--hc
Confidence            9988775543222333445678899999999999999999999999997521                  111111  22


Q ss_pred             CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc-eeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          142 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       142 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      ...+.+..+.|+|+|..|+-.+.|..+.+-|..... .+.......-+..++.|-.+...+++|-
T Consensus       204 ~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~  268 (361)
T KOG1523|consen  204 SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGY  268 (361)
T ss_pred             cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCC
Confidence            345789999999999999999999999999986554 3333333336778888877666655553

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=6.6e-18  Score=126.50  Aligned_cols=180  Identities=16%  Similarity=0.303  Sum_probs=140.5

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc----------eeeeeeeccCCce--EEEcCCCCEEEEE
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN----------ACQGILRLRGRPT--VAFDQQGLVFAVA   72 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----------~~~~~~~~~~~~~--~~~~~~~~~l~~~   72 (235)
                      +++.+|++|.++|.|+++.+++..+++|+.||+|+.|++...          .....+.+|...+  +++++....|+++
T Consensus       335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc  414 (577)
T KOG0642|consen  335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC  414 (577)
T ss_pred             eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee
Confidence            567789999999999999999999999999999999976421          2334556666555  8899988899999


Q ss_pred             ecCCeEEEEeccCCCCC--C------c-eeEeec---------------------------------C-----CCcceeE
Q 026679           73 MEAGAIKLFDSRSYDKG--P------F-DTFLVG---------------------------------G-----DTAEVCD  105 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~~--~------~-~~~~~~---------------------------------~-----~~~~v~~  105 (235)
                      +.||++++|+.......  .      . ..+...                                 .     ....+..
T Consensus       415 s~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~  494 (577)
T KOG0642|consen  415 SSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINK  494 (577)
T ss_pred             cCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccce
Confidence            99999999997654320  0      0 000000                                 0     0123556


Q ss_pred             EEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC
Q 026679          106 IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN  185 (235)
Q Consensus       106 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  185 (235)
                      +.++|.....+++..|+.|+++|..+++.+....  .|...++++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus       495 vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~--a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  495 VVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV--AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             EEecCCCCeeEecccCCceecccccccccchhee--eccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence            7788888889999999999999999999887655  45567999999999999999999999999999887777666655


Q ss_pred             C
Q 026679          186 I  186 (235)
Q Consensus       186 ~  186 (235)
                      .
T Consensus       573 r  573 (577)
T KOG0642|consen  573 R  573 (577)
T ss_pred             c
Confidence            4

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=3.2e-17  Score=131.20  Aligned_cols=195  Identities=17%  Similarity=0.287  Sum_probs=146.2

Q ss_pred             EEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcC---CCCEEEEEecCCeEEEEeccCCCCCCceeE
Q 026679           19 SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQ---QGLVFAVAMEAGAIKLFDSRSYDKGPFDTF   94 (235)
Q Consensus        19 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~---~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~   94 (235)
                      -+.|.....+|++++.-..|+|||.........+......+ -++++   .|+.+++|..||.+++||.+..... ....
T Consensus      1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~ 1248 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVC 1248 (1387)
T ss_pred             eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccce
Confidence            35677666667777768899999998888888777666544 34443   5799999999999999999875542 2344


Q ss_pred             eecCCCcc--eeEEEEccCCC-eEEEecCCCcEEEEEcCCCceeeeeccCCC--CC-cceeeEEeCCCcEEEEeCCCCcE
Q 026679           95 LVGGDTAE--VCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPS--PN-TNTEATFTPDGQYVVSGSGDGTL  168 (235)
Q Consensus        95 ~~~~~~~~--v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~-~i~~~~~~~~~~~l~~~~~dg~i  168 (235)
                      ....|...  |..+.+.+.|- .|++|+.+|.|++||++.......+....+  .+ ..+++..++....+|+|+. +.|
T Consensus      1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred             eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence            55567666  99999988654 499999999999999998533222222221  13 4899999999999999998 899


Q ss_pred             EEEEcCCCceeeeecCC-------CcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          169 HAWNINTRNEVACWNGN-------IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       169 ~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      +||++ .|+.+..++.+       .+.+.|++|+|...++++|+  +.+.||..+..
T Consensus      1328 kIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1328 KIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             EEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            99998 45555554432       34679999999988888887  66999987544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=9.3e-17  Score=114.73  Aligned_cols=196  Identities=17%  Similarity=0.262  Sum_probs=142.5

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec---cCCceEEEcCC-CCEEEEEecCCeEEEEeccCCCC--
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL---RGRPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDK--   88 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~--   88 (235)
                      -.+..++|++.-..+|++..|-.|++||-.. .+...++.   .+..+++|-|. +..|++|+.. -|.+|.......  
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence            4577899998666789999999999999655 44444433   34567999994 4677777765 588997653211  


Q ss_pred             --------CCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE
Q 026679           89 --------GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV  159 (235)
Q Consensus        89 --------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  159 (235)
                              .........+| .+|++++|.+||..+++++. +..|.+||..++..+....  ...+.++-+.|||||.+|
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--~glgg~slLkwSPdgd~l  253 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--KGLGGFSLLKWSPDGDVL  253 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--cCCCceeeEEEcCCCCEE
Confidence                    11122233334 68999999999999999876 6789999999988765442  233557889999999999


Q ss_pred             EEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679          160 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP  215 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~  215 (235)
                      ++++-|+..++|+....-......-..+.|....|+|+|++|+.+. +.-++|.+..
T Consensus       254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f  310 (445)
T KOG2139|consen  254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTF  310 (445)
T ss_pred             EEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence            9999999999996543322223333445999999999999887765 7777887654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=9.8e-17  Score=112.22  Aligned_cols=160  Identities=17%  Similarity=0.216  Sum_probs=122.9

Q ss_pred             CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc--CCCeEEEecCCCcEEEEEcCC---
Q 026679           57 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYG---  131 (235)
Q Consensus        57 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~---  131 (235)
                      +.++.|.+.|+.+++|+.|++++|||.+.....-........|.+.|..+.|.+  -|+.+++++.|+++.+|.-..   
T Consensus        16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~   95 (361)
T KOG2445|consen   16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE   95 (361)
T ss_pred             eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence            345899999999999999999999998766654455667788999999999976  589999999999999998521   


Q ss_pred             ----CceeeeeccCCCCCcceeeEEeCC--CcEEEEeCCCCcEEEEEcCCC-----------------------------
Q 026679          132 ----GEKRCGFSLEPSPNTNTEATFTPD--GQYVVSGSGDGTLHAWNINTR-----------------------------  176 (235)
Q Consensus       132 ----~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~-----------------------------  176 (235)
                          .+-+....+......|+.+.|.|.  |-.|++++.||.++||+..+.                             
T Consensus        96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cv  175 (361)
T KOG2445|consen   96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCV  175 (361)
T ss_pred             ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEE
Confidence                122333445556678999999994  778899999999999985421                             


Q ss_pred             --------------------------------------ceeeeecCCCcceeEEEeecC----CCEEEEcccc-eEEeeC
Q 026679          177 --------------------------------------NEVACWNGNIGVVACLKWAPR----RAMFVAASSV-LSFWIP  213 (235)
Q Consensus       177 --------------------------------------~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~-i~iw~~  213 (235)
                                                            ..+.++.+|..+|+.|+|.|+    ...|++++++ |+||.+
T Consensus       176 sWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v  255 (361)
T KOG2445|consen  176 SWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKV  255 (361)
T ss_pred             eeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEE
Confidence                                                  012223467788999999995    3577788755 999998


Q ss_pred             CCC
Q 026679          214 NPS  216 (235)
Q Consensus       214 ~~~  216 (235)
                      ...
T Consensus       256 ~~~  258 (361)
T KOG2445|consen  256 KVA  258 (361)
T ss_pred             eec
Confidence            753

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=1.2e-17  Score=127.30  Aligned_cols=204  Identities=16%  Similarity=0.202  Sum_probs=147.9

Q ss_pred             hhhhhhcccccceeEEEeec-CCCeeEEEeccceEEEEecCcceeeee-----eeccC---CceEEEcCCCCEEEEEecC
Q 026679            5 RILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGI-----LRLRG---RPTVAFDQQGLVFAVAMEA   75 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~-----~~~~~---~~~~~~~~~~~~l~~~~~d   75 (235)
                      +-+..+.+|.+.|+.+.|+| +..+||+||.|..|+||.+..+.....     .-++.   ..++.|+|...-|+..+..
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~  149 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH  149 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence            34556789999999999999 457899999999999999974432221     11222   2348899977767777788


Q ss_pred             CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC-CceeeeeccCCCCCcceeeEEeC
Q 026679           76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTP  154 (235)
Q Consensus        76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~i~~~~~~~  154 (235)
                      |++++||+.+.+.    ...+.+|...|.++.|+.||..|++++.|..|++||.+. ++.++....|... .-..+.|.-
T Consensus       150 g~v~i~D~stqk~----~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~-rdsRv~w~G  224 (1012)
T KOG1445|consen  150 GSVYITDISTQKT----AVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGM-RDSRVLWAG  224 (1012)
T ss_pred             ceEEEEEcccCce----eecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccc-hhheeeecc
Confidence            9999999998776    778889999999999999999999999999999999986 4555555444432 334577766


Q ss_pred             CCcEEEEeCCC----CcEEEEEcCCC-ceeeeecC-CCcceeEEEeecCCCEEEEcc-cceEEeeC
Q 026679          155 DGQYVVSGSGD----GTLHAWNINTR-NEVACWNG-NIGVVACLKWAPRRAMFVAAS-SVLSFWIP  213 (235)
Q Consensus       155 ~~~~l~~~~~d----g~i~v~d~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~  213 (235)
                      +-..|++.+-+    ..+++||.+.. ..++++.- ....|.---+.||.++|+.++ |+-+++-+
T Consensus       225 n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~l  290 (1012)
T KOG1445|consen  225 NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFML  290 (1012)
T ss_pred             chhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEE
Confidence            55556555433    56899998763 34444432 223455567899998888887 55444433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.77  E-value=8e-17  Score=123.64  Aligned_cols=199  Identities=13%  Similarity=0.143  Sum_probs=148.3

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCC----
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG----   89 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~----   89 (235)
                      .|..++|-|||..|+.+.. ..+.+||...|..++.+++|...+  ++|+.+|+.+++|+.|..|.+|+..-....    
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH   92 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH   92 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence            7999999999987776654 468999999999999999998655  999999999999999999999986431110    


Q ss_pred             ----CceeEee-------------------------cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc
Q 026679           90 ----PFDTFLV-------------------------GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL  140 (235)
Q Consensus        90 ----~~~~~~~-------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  140 (235)
                          ....+..                         ......+.+++|..||.+++.|-.+|+|.+-+....+....-..
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rp  172 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERP  172 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCC
Confidence                0000000                         01124577889999999999999999999987544444444444


Q ss_pred             CCCCCcceeeEEeCCC-----cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          141 EPSPNTNTEATFTPDG-----QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       141 ~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      .+...+|.+++|+|..     ..+++.....++.+|.+ +|+.+..-..-.-...|+.+.|+|.+++.|+  +.+++|.-
T Consensus       173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR  251 (1081)
T KOG1538|consen  173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR  251 (1081)
T ss_pred             CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence            4566889999999963     46777777778888877 5655543333445668999999999999987  66888765


Q ss_pred             CCC
Q 026679          214 NPS  216 (235)
Q Consensus       214 ~~~  216 (235)
                      ++-
T Consensus       252 ~Gv  254 (1081)
T KOG1538|consen  252 DGV  254 (1081)
T ss_pred             cCe
Confidence            553

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=2.2e-17  Score=124.77  Aligned_cols=194  Identities=15%  Similarity=0.191  Sum_probs=151.9

Q ss_pred             cccccceeEEEeecCCCeeEEEecc---ceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeEEEEeccC
Q 026679           11 KGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      -.|..+|..+.|+..|.+|++...+   ..|.|.++.......-+....  ...+.|+|...+|++++. ..|++||+..
T Consensus       518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~k  596 (733)
T KOG0650|consen  518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSK  596 (733)
T ss_pred             EecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhH
Confidence            3588999999999999999988664   468899987766555553333  334899999988888876 5899999976


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                      ...    ...+......|..++.+|.|..|+.++.|+.+..||+.-.. +.+.+.  .|...+++++|++.-.++++|+.
T Consensus       597 qel----vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr--~H~~avr~Va~H~ryPLfas~sd  670 (733)
T KOG0650|consen  597 QEL----VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR--LHEKAVRSVAFHKRYPLFASGSD  670 (733)
T ss_pred             HHH----HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh--hhhhhhhhhhhccccceeeeecC
Confidence            443    33344455678999999999999999999999999997653 333333  45567999999999999999999


Q ss_pred             CCcEEEEEcCC---------CceeeeecCCCcc----eeEEEeecCCCEEEEcc--cceEEe
Q 026679          165 DGTLHAWNINT---------RNEVACWNGNIGV----VACLKWAPRRAMFVAAS--SVLSFW  211 (235)
Q Consensus       165 dg~i~v~d~~~---------~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~--~~i~iw  211 (235)
                      ||.+.|+.-.-         --++..+.+|...    |....|+|...+|.+++  |+|++|
T Consensus       671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            99999986431         1235667788654    88999999999999988  789998

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.76  E-value=4.4e-16  Score=107.30  Aligned_cols=153  Identities=21%  Similarity=0.339  Sum_probs=106.8

Q ss_pred             eEEEeecCCCeeEEEec----------cceEEEEecCc-ceeeeeeecc---CCceEEEcCCCCEEEEEe--cCCeEEEE
Q 026679           18 ISLCMSPVNDSFMSGSL----------DHSVRIWDLRV-NACQGILRLR---GRPTVAFDQQGLVFAVAM--EAGAIKLF   81 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~----------d~~i~vwd~~~-~~~~~~~~~~---~~~~~~~~~~~~~l~~~~--~dg~v~i~   81 (235)
                      ..+.|+|+|+.|+.-..          -+...+|.++. +.....+...   .+..++|+|+++.|++..  .++.+.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999987654322          23455555532 2334444332   244599999999876653  56799999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC---CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      |++. +    ....+  ....+..+.|+|+|++|++++.   .|.|.+||.++.+.+....   + ..++.++|+|+|++
T Consensus        89 d~~~-~----~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~-~~~t~~~WsPdGr~  157 (194)
T PF08662_consen   89 DVKG-K----KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---H-SDATDVEWSPDGRY  157 (194)
T ss_pred             cCcc-c----EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---c-CcEEEEEEcCCCCE
Confidence            9962 1    12333  3456788999999999999874   4679999999887775543   2 23788999999999


Q ss_pred             EEEeCC------CCcEEEEEcCCCceeeee
Q 026679          159 VVSGSG------DGTLHAWNINTRNEVACW  182 (235)
Q Consensus       159 l~~~~~------dg~i~v~d~~~~~~~~~~  182 (235)
                      |+++..      |+.++||+. +|+.+...
T Consensus       158 ~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  158 LATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             EEEEEeccceeccccEEEEEe-cCeEeEec
Confidence            998864      678999998 57666544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.76  E-value=3.4e-17  Score=122.31  Aligned_cols=165  Identities=19%  Similarity=0.276  Sum_probs=121.6

Q ss_pred             ccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679           14 KERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD   92 (235)
Q Consensus        14 ~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~   92 (235)
                      +..|+|+.|-|.+ ..++.+-.+|.++++|.+.      ......+.....+++..+.....-+..      +.  .+  
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------~~~~t~p~~~~~k~~~~f~i~t~ksk~------~r--NP--  282 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------VCGATAPSYQALKDGDQFAILTSKSKK------TR--NP--  282 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccc------cccCCCCcccccCCCCeeEEeeeeccc------cC--Cc--
Confidence            3689999999965 5667777899999998621      111122334444566655544321110      00  11  


Q ss_pred             eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679           93 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN  172 (235)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  172 (235)
                      .....--...|..++|+|||++||+.+.||.+++||..+.+.+..++  ..-+...|++|||||+||++|++|--|.||.
T Consensus       283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS  360 (636)
T KOG2394|consen  283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS  360 (636)
T ss_pred             cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH--hhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence            11122223478999999999999999999999999998877665443  3335689999999999999999999999999


Q ss_pred             cCCCceeeeecCCCcceeEEEeec
Q 026679          173 INTRNEVACWNGNIGVVACLKWAP  196 (235)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~  196 (235)
                      +...+.+..-++|.+.|..++|.|
T Consensus       361 f~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  361 FEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccceEEEeccccccceeeEeecc
Confidence            999999999999999999999984

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=2.4e-16  Score=113.51  Aligned_cols=196  Identities=12%  Similarity=0.229  Sum_probs=147.2

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcce----eeeeeecc-CCceEEEcCC-CCEEEEEecC--CeEEEEecc
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA----CQGILRLR-GRPTVAFDQQ-GLVFAVAMEA--GAIKLFDSR   84 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~-~~~~~~~~~~-~~~l~~~~~d--g~v~i~d~~   84 (235)
                      .+++|..++..  ...|++|-.+|.+.+|..+.+.    ....+..+ +...+.-++. ..++++|+..  ..+.+||++
T Consensus       104 ~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  104 GTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             ccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            34455555544  3478888899999999987442    22223322 2333555554 4566668888  889999998


Q ss_pred             CCCCCCceeEeecC---------CCcceeEEEEccC--CCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEE
Q 026679           85 SYDKGPFDTFLVGG---------DTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATF  152 (235)
Q Consensus        85 ~~~~~~~~~~~~~~---------~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~  152 (235)
                      +.+.    .+....         -+-.++++.|-+.  ...|++++.-+.+++||.+.++ ++..+..  ...+++++..
T Consensus       182 ~~~q----iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~--~E~~is~~~l  255 (412)
T KOG3881|consen  182 QSKQ----IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF--LENPISSTGL  255 (412)
T ss_pred             ccee----eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc--ccCcceeeee
Confidence            7632    221111         1234567888887  7889999999999999998654 4444444  3466999999


Q ss_pred             eCCCcEEEEeCCCCcEEEEEcCCCceeee-ecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          153 TPDGQYVVSGSGDGTLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      .|+++++++|...|.+..||++.++.... +++..+.|++|..+|..+++++++  ..++|+|+++.
T Consensus       256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            99999999999999999999999998877 888899999999999999999999  77999999884

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.75  E-value=2.6e-16  Score=122.33  Aligned_cols=203  Identities=17%  Similarity=0.228  Sum_probs=148.9

Q ss_pred             cccccceeEEEeecCCC--eeEEEeccceEEEEecCccee-ee-----e--------eeccCCceEEEcC-CCCEEEEEe
Q 026679           11 KGHKERVISLCMSPVND--SFMSGSLDHSVRIWDLRVNAC-QG-----I--------LRLRGRPTVAFDQ-QGLVFAVAM   73 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd~~~~~~-~~-----~--------~~~~~~~~~~~~~-~~~~l~~~~   73 (235)
                      ..|..+++.+.|..+..  -+++++.||.|..|+++.-.. ..     .        -......+++|.+ +...|++|+
T Consensus       288 ~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT  367 (555)
T KOG1587|consen  288 VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT  367 (555)
T ss_pred             ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc
Confidence            35889999999987544  499999999999998764322 10     0        1112234488888 567899999


Q ss_pred             cCCeEEEEeccCCCCCC----ceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC-CCceeeeeccCCCCCcce
Q 026679           74 EAGAIKLFDSRSYDKGP----FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEKRCGFSLEPSPNTNT  148 (235)
Q Consensus        74 ~dg~v~i~d~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~i~  148 (235)
                      .+|.|.--+-.......    ........|.++|..+.++|=+..++..+.|.++++|... ...++.  ....+...++
T Consensus       368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~--~~~~~~~~v~  445 (555)
T KOG1587|consen  368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL--SLDSSPDYVT  445 (555)
T ss_pred             CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch--hhhhccceee
Confidence            99999885544433322    1223455678999999999977766666669999999976 444443  3444555699


Q ss_pred             eeEEeCCC-cEEEEeCCCCcEEEEEcCC--CceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          149 EATFTPDG-QYVVSGSGDGTLHAWNINT--RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       149 ~~~~~~~~-~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      +++|||.. ..++++..||.|.+||+..  ..++...+.+....+.+.|+++|+.|+.|+  |++.+|++..
T Consensus       446 ~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  446 DVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            99999964 5678888899999999964  344555555566778899999999999998  9999999864

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.75  E-value=3.6e-16  Score=121.55  Aligned_cols=206  Identities=17%  Similarity=0.216  Sum_probs=145.1

Q ss_pred             ccceeEEEeecC-CCeeEEEeccceEEEEecCccee--eeee----eccCCce--EEEcC--CCCEEEEEecCCeEEEEe
Q 026679           14 KERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNAC--QGIL----RLRGRPT--VAFDQ--QGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus        14 ~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~--~~~~----~~~~~~~--~~~~~--~~~~l~~~~~dg~v~i~d   82 (235)
                      ...|+|++|+|. ..+++.|..+|.|.+||++.+..  ...+    ..|..++  +.|..  .+.-|++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            468999999995 57888999999999999987755  2222    2333444  55554  335599999999999999


Q ss_pred             ccCCCCCCcee----Ee----ecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceee------eeccCCCCCcc
Q 026679           83 SRSYDKGPFDT----FL----VGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRC------GFSLEPSPNTN  147 (235)
Q Consensus        83 ~~~~~~~~~~~----~~----~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~------~~~~~~~~~~i  147 (235)
                      ++....+....    ..    .......+++++|.+ +...+++|+++|.|..-+....+...      ......|.++|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            87654311110    00    012234688899988 56789999999998874433322211      11233456889


Q ss_pred             eeeEEeCCCcEEEEeCCCCcEEEEEcC-CCceeeeecCCCcceeEEEeecCCCEEEEc-c--cceEEeeCCCCCCC
Q 026679          148 TEATFTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNGNIGVVACLKWAPRRAMFVAA-S--SVLSFWIPNPSSNS  219 (235)
Q Consensus       148 ~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~--~~i~iw~~~~~~~~  219 (235)
                      ..+.++|-+..++..+.|..+++|... ...++..+..+...+++++|||....+... .  |++.+||+......
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~  477 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE  477 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence            999999977666555559999999988 777888888888889999999977554444 3  88999999655433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.74  E-value=1.6e-15  Score=117.72  Aligned_cols=203  Identities=21%  Similarity=0.337  Sum_probs=136.2

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEecc---ceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEE-ecCC--eEE
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIK   79 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~dg--~v~   79 (235)
                      .+.+..+...+...+|+|+|++|+.++.+   ..|++||+.+++......... ....+|+|+++.|+.. +.++  .|.
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence            34455566678899999999998877654   479999998876544433332 2348999999877654 4444  588


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC-C--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG  156 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  156 (235)
                      +||+.+...     ..+..+........|+|+|+.|+..+.. +  .|+++|+.+++... +...  ........|+|+|
T Consensus       262 ~~d~~~~~~-----~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~--~~~~~~~~~spdg  333 (417)
T TIGR02800       262 VMDLDGKQL-----TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFR--GGYNASPSWSPDG  333 (417)
T ss_pred             EEECCCCCE-----EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC--CCCccCeEECCCC
Confidence            888876542     2222333445567899999988776543 3  58888887766432 2222  2346678999999


Q ss_pred             cEEEEeCCCC---cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCC
Q 026679          157 QYVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNS  219 (235)
Q Consensus       157 ~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~  219 (235)
                      ++|+.++.++   .|.+||+.++... .+... .......|+|++++|+..+     ..+.+.+.++....
T Consensus       334 ~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~  402 (417)
T TIGR02800       334 DLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRA  402 (417)
T ss_pred             CEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceee
Confidence            9998887765   7899998775543 23222 2345668999999988876     23666666554433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=3.7e-15  Score=115.95  Aligned_cols=205  Identities=19%  Similarity=0.218  Sum_probs=135.8

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEecc---ceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEE-ecCC--eEE
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVA-MEAG--AIK   79 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~dg--~v~   79 (235)
                      .+.+..+...+....|+|||+.|+..+.+   ..|.+||+.+++.......... ....|+|+|+.|+.. ..+|  .|.
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence            34455667788999999999988776543   3689999988865544333322 248999999988754 4444  678


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-C--CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG  156 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  156 (235)
                      ++|+.++..     ..+..+........|+|||+.++..+. +  ..|+++|+.+++.... ....  .......|+|+|
T Consensus       271 ~~d~~~~~~-----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~--~~~~~~~~Spdg  342 (430)
T PRK00178        271 VMDLASRQL-----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVG--NYNARPRLSADG  342 (430)
T ss_pred             EEECCCCCe-----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCC--CCccceEECCCC
Confidence            888877543     223334445667889999998877664 3  3588888877765432 2222  223457899999


Q ss_pred             cEEEEeCCC-C--cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCCCC
Q 026679          157 QYVVSGSGD-G--TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       157 ~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~~~  221 (235)
                      ++|+..+.+ +  .|.++|+.+++.. .+. .........|+|+|+.++.++     ..+.+++.++.....+
T Consensus       343 ~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l  413 (430)
T PRK00178        343 KTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL  413 (430)
T ss_pred             CEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence            999876543 3  5888999877643 232 122233568999999998775     2367777765544333

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=3.9e-16  Score=125.15  Aligned_cols=205  Identities=15%  Similarity=0.180  Sum_probs=143.4

Q ss_pred             cceeEEEeecC--CCeeEEEeccceEEEEecC-c----ceeeeeeec---------cCCceEEEcCCCCEEEEEecCCeE
Q 026679           15 ERVISLCMSPV--NDSFMSGSLDHSVRIWDLR-V----NACQGILRL---------RGRPTVAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus        15 ~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~-~----~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~dg~v   78 (235)
                      ..|+.+.+-.+  ..++++|+.||.||||+-- +    .+.+..+..         .....+.|......|++++.-..|
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            57888888663  4689999999999999742 2    122222211         012237788777777777778999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCce---eeeeccCCCCCcceeeEEeC
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTP  154 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~i~~~~~~~  154 (235)
                      +|||......   ..-...+...-++++.-+- .|+.+++|..||.|++||.+....   +..++.+....+|..+.+.+
T Consensus      1190 RIWDa~~E~~---~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1190 RIWDAHKEQV---VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred             EEEeccccee---EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec
Confidence            9999987553   1111122334566554433 478999999999999999986543   34444444444599999998


Q ss_pred             CCc-EEEEeCCCCcEEEEEcCCCceeee--ecCCC--c-ceeEEEeecCCCEEEEcc-cceEEeeCCCCCCCCCC
Q 026679          155 DGQ-YVVSGSGDGTLHAWNINTRNEVAC--WNGNI--G-VVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDE  222 (235)
Q Consensus       155 ~~~-~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~--~-~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~~~~~  222 (235)
                      .|- .|++|+.+|.|++||++.......  +..|.  + ..+++..+++...+++|+ +.++||++.+..+..+.
T Consensus      1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred             CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccc
Confidence            665 499999999999999987433222  22232  3 589999999999999999 88999999987766554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.74  E-value=8.1e-17  Score=120.52  Aligned_cols=179  Identities=12%  Similarity=0.184  Sum_probs=139.6

Q ss_pred             CeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCccee
Q 026679           27 DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC  104 (235)
Q Consensus        27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~  104 (235)
                      ..|+.++.||.+.+-+ +.++..+.+..|...+  -.|+|+|.-|+++++||.|++|.-..+-     ...+-....+|+
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-----RStl~Q~~~~v~  149 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-----RSTVVQNEESIR  149 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-----HHHHhhcCceeE
Confidence            4688889999998887 5677777777777544  7899999999999999999999865432     223334557899


Q ss_pred             EEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecC
Q 026679          105 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG  184 (235)
Q Consensus       105 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  184 (235)
                      |++|.|+.+.++.+. .+.+.+=.+.....+  +....|.+-|.++.|+|..+.+++|++|-..+|||. .|..+..-..
T Consensus       150 c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~--i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~  225 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQ-GGHISIKPLAANSKI--IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAA  225 (737)
T ss_pred             EEEECCCCCceEEec-CCeEEEeecccccce--eEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCCh
Confidence            999999988777654 445666666554433  455667788999999999999999999999999996 6778888888


Q ss_pred             CCcceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679          185 NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS  216 (235)
Q Consensus       185 ~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~  216 (235)
                      |+.+|++++|.|+ ..++.++ +++++=.++.+
T Consensus       226 ~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~G  257 (737)
T KOG1524|consen  226 EEYAITSVAFNPE-KDYLLWSYNTARFSSPRVG  257 (737)
T ss_pred             hccceeeeeeccc-cceeeeeeeeeeecCCCcc
Confidence            9999999999999 6666666 66664444433

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=4.8e-17  Score=117.96  Aligned_cols=159  Identities=15%  Similarity=0.150  Sum_probs=121.2

Q ss_pred             ceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee
Q 026679           58 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG  137 (235)
Q Consensus        58 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  137 (235)
                      .+++++++|..+++++.||.+++|+......    ......|...|.++.|+|||+.|++.+.| ..++|+..++..+..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t----~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT----ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh----hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence            3589999999999999999999999766554    55566788999999999999999999999 899999999977776


Q ss_pred             eccCCCCCcceeeEEeCCC---c--EEEEeCCCCcEEEEEcCCCce-----eeeecCCCcceeEEEeecCCCEEEEcc--
Q 026679          138 FSLEPSPNTNTEATFTPDG---Q--YVVSGSGDGTLHAWNINTRNE-----VACWNGNIGVVACLKWAPRRAMFVAAS--  205 (235)
Q Consensus       138 ~~~~~~~~~i~~~~~~~~~---~--~l~~~~~dg~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~--  205 (235)
                      ......+.....+.|+.++   .  .++....-+.|+.||+.....     ..........|++++.+++|++++.|+  
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence            6645555667778898877   2  333334456677776643221     111112235799999999999999998  


Q ss_pred             cceEEeeCCCCCCCCC
Q 026679          206 SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       206 ~~i~iw~~~~~~~~~~  221 (235)
                      |++-|++...-+...+
T Consensus       303 GsVai~~~~~lq~~~~  318 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQY  318 (398)
T ss_pred             CcEEEEEeceeeeeEe
Confidence            8899999876554443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=1.8e-17  Score=129.74  Aligned_cols=206  Identities=17%  Similarity=0.209  Sum_probs=147.6

Q ss_pred             CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeE
Q 026679            1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus         1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v   78 (235)
                      ++++.++..++||++.|+.++.+.+..+++++|.|..|++|.+.++.++..+.+|...+  ++|+|-.    +.+.||++
T Consensus       219 ~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~  294 (1113)
T KOG0644|consen  219 METARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTC  294 (1113)
T ss_pred             ccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCce
Confidence            46788999999999999999999988899999999999999999999999999998655  8899854    77889999


Q ss_pred             EEEeccC-CCCCCceeEeecCCCcceeE--------------------------EEEccCCCeEEEe-----------cC
Q 026679           79 KLFDSRS-YDKGPFDTFLVGGDTAEVCD--------------------------IKFSNDGKSMLLT-----------TT  120 (235)
Q Consensus        79 ~i~d~~~-~~~~~~~~~~~~~~~~~v~~--------------------------~~~~~~~~~l~~~-----------~~  120 (235)
                      ++||.+- ........... .....+.+                          ++|....-.+++.           -.
T Consensus       295 ~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~  373 (1113)
T KOG0644|consen  295 RIWDARLEPRIYVPRPLKF-TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARN  373 (1113)
T ss_pred             EeccccccccccCCCCCCc-ccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeee
Confidence            9999871 11000000000 00011222                          2222222222222           22


Q ss_pred             CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-EEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCC
Q 026679          121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA  199 (235)
Q Consensus       121 d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  199 (235)
                      +-.+.+|++.+++..+....+.  ..+..+.++|-.. ...+++.||...|||+-.|.++..+....+.+..-+|+++|.
T Consensus       374 ~~~~~vwnl~~g~l~H~l~ghs--d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgt  451 (1113)
T KOG0644|consen  374 DHRLCVWNLYTGQLLHNLMGHS--DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGT  451 (1113)
T ss_pred             eeEeeeeecccchhhhhhcccc--cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCc
Confidence            4457778888887776655544  4477799999544 456889999999999998888776653346677789999999


Q ss_pred             EEEEcc--cceEEeeC
Q 026679          200 MFVAAS--SVLSFWIP  213 (235)
Q Consensus       200 ~l~~~~--~~i~iw~~  213 (235)
                      .++...  |.+.|...
T Consensus       452 s~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  452 SIALSDDHGQLYILGT  467 (1113)
T ss_pred             eEecCCCCCceEEecc
Confidence            998887  66777655

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=9.4e-15  Score=113.61  Aligned_cols=202  Identities=17%  Similarity=0.221  Sum_probs=129.9

Q ss_pred             hcccccceeEEEeecCCCeeEEEecc-c--eEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEE-EecCCe--EEEEe
Q 026679           10 FKGHKERVISLCMSPVNDSFMSGSLD-H--SVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAV-AMEAGA--IKLFD   82 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~~~~l~s~~~d-~--~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~-~~~dg~--v~i~d   82 (235)
                      +..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++.......... ...+|+|+|+.|+. ...+|.  |.++|
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            33445567889999999988876543 2  588899988765443333322 34899999998765 455664  77778


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-C--CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV  159 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  159 (235)
                      +.+++.     ..+..+.......+|+|||+.++..+. +  ..|+++|+.+++.... .....  .....+|+|||++|
T Consensus       293 l~tg~~-----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~--~~~~~~~SpDG~~l  364 (448)
T PRK04792        293 IATKAL-----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGE--QNLGGSITPDGRSM  364 (448)
T ss_pred             CCCCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCC--CCcCeeECCCCCEE
Confidence            766542     223334445667899999998877654 3  3577778877765432 22222  23457899999998


Q ss_pred             EEeCC-CC--cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCCCC
Q 026679          160 VSGSG-DG--TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       160 ~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~~~  221 (235)
                      +..+. ++  .|.++|+.+++.. .+... .......|+|+|+.|+..+     ..+.+++.++.....+
T Consensus       365 ~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l  432 (448)
T PRK04792        365 IMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL  432 (448)
T ss_pred             EEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence            77654 33  4666788777643 23222 1223458999999988765     2377777766554444

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.72  E-value=3.9e-15  Score=112.46  Aligned_cols=186  Identities=13%  Similarity=0.195  Sum_probs=150.0

Q ss_pred             cCCCeeEEEeccceEEEEecCcceeeeeeeccC---Cce--EEE--------------------cCCCCEEEEEecCCeE
Q 026679           24 PVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPT--VAF--------------------DQQGLVFAVAMEAGAI   78 (235)
Q Consensus        24 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~--~~~--------------------~~~~~~l~~~~~dg~v   78 (235)
                      |...++|....||.+++||...++....+....   ..+  ..|                    +.+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            445789999999999999999887766654321   111  222                    1234567888889999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      .+|+...++.  ........|.+.|.++.++.+-..|.+++.|+.+..|+....+..+.+....  ..+.+++.+|||..
T Consensus        83 ~~ys~~~g~i--t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~--~~~~sl~is~D~~~  158 (541)
T KOG4547|consen   83 LLYSVAGGEI--TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK--PLVSSLCISPDGKI  158 (541)
T ss_pred             EEEEecCCeE--EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC--CccceEEEcCCCCE
Confidence            9999988764  2233446799999999999999999999999999999999998888776554  44888999999999


Q ss_pred             EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecC-----CCEEEEcc---cceEEeeCCC
Q 026679          159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR-----RAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~---~~i~iw~~~~  215 (235)
                      |++++.  .|.+||+++++.+..+.+|.++|.+++|..+     |.+++++.   ..+.+|-.+.
T Consensus       159 l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  159 LLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            998874  6999999999999999999999999999887     78888776   5588888765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.3e-15  Score=108.25  Aligned_cols=208  Identities=15%  Similarity=0.239  Sum_probs=149.4

Q ss_pred             hhhhhhc-ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC----ceEEEcCCCCEEEEEecCCeEE
Q 026679            5 RILRYFK-GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR----PTVAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         5 ~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~dg~v~   79 (235)
                      +++.... .|...|.|++|.....++++|..+++|..-|+++.+.+..+.....    .-+..+|..+.|++.+.++.|.
T Consensus        95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~  174 (609)
T KOG4227|consen   95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVS  174 (609)
T ss_pred             CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEE
Confidence            3344333 3568999999999889999999999999999999988887765542    2278899999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCcee-----------------------
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKR-----------------------  135 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~-----------------------  135 (235)
                      +||.+.... +...+...........+.|+|. ..+|++.+..+-+.+||.+.....                       
T Consensus       175 ~~D~Rd~~~-~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~  253 (609)
T KOG4227|consen  175 FIDNRDRQN-PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS  253 (609)
T ss_pred             EEeccCCCC-CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence            999987652 2223334444566778889984 566777788888899997532110                       


Q ss_pred             -------------------------eeeccC-CC-----CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC--------
Q 026679          136 -------------------------CGFSLE-PS-----PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR--------  176 (235)
Q Consensus       136 -------------------------~~~~~~-~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--------  176 (235)
                                               ..++.. ..     ...+.+++|..+- -+++|+.+-.|++|.+...        
T Consensus       254 ~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~  332 (609)
T KOG4227|consen  254 PSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQ  332 (609)
T ss_pred             CCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccc
Confidence                                     000000 00     0223345554433 4889999999999998531        


Q ss_pred             ---------------ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          177 ---------------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       177 ---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                                     +.+..+++|.+.+..+.|+|...+|++++  +.+++|...
T Consensus       333 IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  333 IGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             cCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence                           12455789999999999999988888887  779999753

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=7e-17  Score=119.32  Aligned_cols=119  Identities=23%  Similarity=0.467  Sum_probs=94.8

Q ss_pred             CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc------------eee-eeccCCCCCcceeeEE-eCCCcEEEEeCCC
Q 026679          100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE------------KRC-GFSLEPSPNTNTEATF-TPDGQYVVSGSGD  165 (235)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------------~~~-~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d  165 (235)
                      .-.|++++++.++.-|+++..|-.|+++.-.-+.            ..+ .++.|.....|..+-| -|...|+++|+.-
T Consensus       336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC  415 (559)
T KOG1334|consen  336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC  415 (559)
T ss_pred             cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc
Confidence            3468999999888888888889999999543221            111 2455555555666654 6788999999999


Q ss_pred             CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          166 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       166 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      |.|.||+-.+++.+..+.+....|.||.=+|.-..|++++  .+|+||...+...
T Consensus       416 GhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  416 GHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             ceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcccc
Confidence            9999999999999998888777999999999999999998  8899998855443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=6.9e-15  Score=103.50  Aligned_cols=178  Identities=11%  Similarity=0.217  Sum_probs=128.0

Q ss_pred             ceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCe
Q 026679           36 HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS  114 (235)
Q Consensus        36 ~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  114 (235)
                      ..|.|||-...+++..+.... +..+.+.++  .+++.. .+.|.+|.....- ...........+..+.+++-..+...
T Consensus        75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~-k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP-KLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh-hheeeeecccCCCceEeecCCCCceE
Confidence            469999966666776666544 333555544  455543 4689999887422 12223333333445555544444455


Q ss_pred             EEEe-cCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc-EEEEEcCCCceeeeecCC--Cccee
Q 026679          115 MLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-LHAWNINTRNEVACWNGN--IGVVA  190 (235)
Q Consensus       115 l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~--~~~v~  190 (235)
                      |+.- -.-|.|++-|+...+.-.......|...|.+++++.+|..+|+++..|+ |+|||..+|+.+.++..-  ...|.
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence            5553 3479999999987665333455677788999999999999999999998 899999999999988632  35899


Q ss_pred             EEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          191 CLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       191 ~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +|+|+|++.+|+++|  |++.|+.++...
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            999999999999998  999999987644

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.4e-15  Score=113.54  Aligned_cols=208  Identities=12%  Similarity=0.215  Sum_probs=148.1

Q ss_pred             hhhhhcccccceeEEEeecCCCe-eEEEeccceEEEEecCcceeee----------------------------eeeccC
Q 026679            6 ILRYFKGHKERVISLCMSPVNDS-FMSGSLDHSVRIWDLRVNACQG----------------------------ILRLRG   56 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~----------------------------~~~~~~   56 (235)
                      +++.| .|...-+.|..+|||++ +|+|..--.|++||+.+-....                            .+..|.
T Consensus        44 LiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa  122 (703)
T KOG2321|consen   44 LIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA  122 (703)
T ss_pred             HHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence            34444 36778889999999998 5677778899999986432111                            011111


Q ss_pred             ---------Cc----eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCc
Q 026679           57 ---------RP----TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN  123 (235)
Q Consensus        57 ---------~~----~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  123 (235)
                               ++    -++++.-..-|++++....|+-++++.+..    ...+......++++..++-..+|++|+.+|.
T Consensus       123 k~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf----L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~  198 (703)
T KOG2321|consen  123 KYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF----LNPFETDSGELNVVSINEEHGLLACGTEDGV  198 (703)
T ss_pred             hcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc----ccccccccccceeeeecCccceEEecccCce
Confidence                     01    133333222345555556788888877654    3333344578999999998889999999999


Q ss_pred             EEEEEcCCCceeeeeccCC----CC-----CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-CCCcceeEEE
Q 026679          124 IYVLDAYGGEKRCGFSLEP----SP-----NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLK  193 (235)
Q Consensus       124 i~~~d~~~~~~~~~~~~~~----~~-----~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~  193 (235)
                      |..||.+....+..+....    ++     ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +..-+|..+.
T Consensus       199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~  278 (703)
T KOG2321|consen  199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD  278 (703)
T ss_pred             EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence            9999999877665544322    22     348999999999999999999999999999988875543 2245899999


Q ss_pred             eecC--CCEEEEcc-cceEEeeCCCCCC
Q 026679          194 WAPR--RAMFVAAS-SVLSFWIPNPSSN  218 (235)
Q Consensus       194 ~~~~--~~~l~~~~-~~i~iw~~~~~~~  218 (235)
                      |.+.  ...+++.+ ..++|||-.+++.
T Consensus       279 ~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  279 WQDTDQQNKVVSMDKRILKIWDECTGKP  306 (703)
T ss_pred             ccccCCCceEEecchHHhhhcccccCCc
Confidence            9875  67788888 7799999876654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.71  E-value=6.8e-17  Score=118.75  Aligned_cols=204  Identities=12%  Similarity=0.153  Sum_probs=166.3

Q ss_pred             eEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEee
Q 026679           18 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV   96 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~   96 (235)
                      ..+.++.+|++++.|+..|.|-.+|..+++....+.... +..+.|-.+..++|++- ...+++||-..-+     ...+
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE-----lHCl  206 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE-----LHCL  206 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcE-----Eeeh
Confidence            567888899999999999999999999999888877654 34478887777777764 4689999865433     2222


Q ss_pred             cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC
Q 026679           97 GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR  176 (235)
Q Consensus        97 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  176 (235)
                      . ....|..+.|-|..-+|++++..|.+..-|+.+|+.+..+....  +.+..|+-+|-+..+-+|...|+|.+|.....
T Consensus       207 k-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~--G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk  283 (545)
T KOG1272|consen  207 K-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA--GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK  283 (545)
T ss_pred             h-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC--CccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence            2 23578889999998889999999999999999999988776544  55777899999999999999999999999999


Q ss_pred             ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC-CCCCCCCCCCCCCc
Q 026679          177 NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS-SNSTDESTDPQATV  230 (235)
Q Consensus       177 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~-~~~~~~~~~~~~~i  230 (235)
                      +++..+..|.++|.+|++.++|+|+++++  ..++|||+..- ++.+.....|...+
T Consensus       284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~l  340 (545)
T KOG1272|consen  284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNL  340 (545)
T ss_pred             chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccc
Confidence            99988989999999999999999999998  77999999754 44444444444443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.2e-15  Score=118.25  Aligned_cols=170  Identities=18%  Similarity=0.266  Sum_probs=118.7

Q ss_pred             eeEEEeecCCCeeEEEe-ccceEEEE--ecCcceeeeeeeccC-CceEEEcCCCCEEEEEe-cCCeEEEEeccCCCCCCc
Q 026679           17 VISLCMSPVNDSFMSGS-LDHSVRIW--DLRVNACQGILRLRG-RPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~-~d~~i~vw--d~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~   91 (235)
                      ...++|+|||+.|+.++ .+|.+.||  |+.++.......... .....|+|+|+.|+..+ .+|...+|++....... 
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-  328 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-  328 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-
Confidence            34689999999887764 67766555  665555433322222 23499999999777655 57888999876533211 


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW  171 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  171 (235)
                       . .. .+..  ....|+|+|+++++.+.++ +.+||+.+++...... . .  ....+.|+|+|++|+.++.++...+|
T Consensus       329 -~-~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~-~--~~~~~~~sPdG~~i~~~s~~g~~~~l  398 (429)
T PRK01742        329 -S-LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-T-F--LDESPSISPNGIMIIYSSTQGLGKVL  398 (429)
T ss_pred             -E-Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-C-C--CCCCceECCCCCEEEEEEcCCCceEE
Confidence             1 11 2222  4578999999998887755 6669998887543221 1 1  23567899999999999989888888


Q ss_pred             Ec--CCCceeeeecCCCcceeEEEeecC
Q 026679          172 NI--NTRNEVACWNGNIGVVACLKWAPR  197 (235)
Q Consensus       172 d~--~~~~~~~~~~~~~~~v~~~~~~~~  197 (235)
                      ++  .+++.+..+..|.+.+...+|+|-
T Consensus       399 ~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        399 QLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEEECCCCceEEccCCCCCCCCcccCCC
Confidence            75  368888888888888999999984

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.1e-14  Score=112.38  Aligned_cols=210  Identities=15%  Similarity=0.164  Sum_probs=129.4

Q ss_pred             hhcccccceeEEEeecCCCe--e-EEEeccc--eEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEec-CC----e
Q 026679            9 YFKGHKERVISLCMSPVNDS--F-MSGSLDH--SVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAME-AG----A   77 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~--l-~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~-dg----~   77 (235)
                      .+......+.+-+|+|||+.  + ++...++  .|.+.++..++........... ..+|+|||+.|+..+. +|    .
T Consensus       179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence            34444556677899999975  2 2443333  5777888877655554444433 3899999988887653 23    3


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CCCc--EEEEEcCC-CceeeeeccCCCCCcceeeEEe
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNN--IYVLDAYG-GEKRCGFSLEPSPNTNTEATFT  153 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~--i~~~d~~~-~~~~~~~~~~~~~~~i~~~~~~  153 (235)
                      +..|++..+..... ..............+|+|||+.|+..+ .+|.  |+++++.. +.....+..  ....+....|+
T Consensus       259 ~~~~~~~~g~~g~~-~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~--~~~~~~~p~wS  335 (428)
T PRK01029        259 IQSFSLETGAIGKP-RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK--KYRNSSCPAWS  335 (428)
T ss_pred             EEEeecccCCCCcc-eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc--CCCCccceeEC
Confidence            44466654321111 111222223345689999999888765 3564  44445432 222222222  22346678999


Q ss_pred             CCCcEEEEeCCC---CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCCCCC
Q 026679          154 PDGQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNSTDE  222 (235)
Q Consensus       154 ~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~~~~  222 (235)
                      |||++|+..+.+   ..|.+||+.+++... +......+....|+|||+.|+...     ..+.++++++++...+.
T Consensus       336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV  411 (428)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            999998876543   469999998887643 332334567899999999887543     45888888776554443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=5.5e-15  Score=116.24  Aligned_cols=207  Identities=15%  Similarity=0.267  Sum_probs=143.3

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      +.|.-|..+|.+++|+++|.+|++|+..+.+.+|.+.+++ .+.++.-+.++  +.++||+...+....|..|.+....+
T Consensus       245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             eEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence            4466788999999999999999999999999999999988 44444444444  89999999999999999999988755


Q ss_pred             CCCCCceeEe-------ecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec-------------------
Q 026679           86 YDKGPFDTFL-------VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-------------------  139 (235)
Q Consensus        86 ~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-------------------  139 (235)
                      ..........       .....+-.+.++++|..+.++..+..|.|.+||+.+.+.+..+.                   
T Consensus       324 l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ita  403 (792)
T KOG1963|consen  324 LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITA  403 (792)
T ss_pred             hhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeee
Confidence            4321110000       11123445667788866667777788888888875443322211                   


Q ss_pred             -----------------------------------------------cCCCCCcceeeEE-eCCCc-EEEEeCCCCcEEE
Q 026679          140 -----------------------------------------------LEPSPNTNTEATF-TPDGQ-YVVSGSGDGTLHA  170 (235)
Q Consensus       140 -----------------------------------------------~~~~~~~i~~~~~-~~~~~-~l~~~~~dg~i~v  170 (235)
                                                                     ..+|...+...++ +|... .+++++.||.+++
T Consensus       404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~Ki  483 (792)
T KOG1963|consen  404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKI  483 (792)
T ss_pred             ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEE
Confidence                                                           1122222222223 23222 7888999999999


Q ss_pred             EEcCCCc----------eeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679          171 WNINTRN----------EVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP  215 (235)
Q Consensus       171 ~d~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~  215 (235)
                      |-+.+.+          +...-.-|..++..++|+.||..|+.+- +.|.+||+.+
T Consensus       484 W~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  484 WVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             EEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence            9984322          2222223678999999999999988886 8899999987

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.69  E-value=1.2e-15  Score=114.23  Aligned_cols=200  Identities=18%  Similarity=0.300  Sum_probs=134.0

Q ss_pred             eEEEeecCCCeeEEEeccceEEEEecCcceee------eeeeccCCceEEE-----cCCCCEEEEEecCCeEEEEeccCC
Q 026679           18 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ------GILRLRGRPTVAF-----DQQGLVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~------~~~~~~~~~~~~~-----~~~~~~l~~~~~dg~v~i~d~~~~   86 (235)
                      +...++-.|.+|+-.- ...+++|+.+.+...      ..++.....+-+|     .|.+--+++|-..|.+.+.|....
T Consensus       127 ~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~  205 (636)
T KOG2394|consen  127 TNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF  205 (636)
T ss_pred             eeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence            3344444455544322 235888887643211      1222222233333     346677899999999999997763


Q ss_pred             CCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCC--------------Cceeeee------------c
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYG--------------GEKRCGF------------S  139 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~--------------~~~~~~~------------~  139 (235)
                      +...+......-....|+++.|-|. ...++++-.+|.+++||..-              +......            .
T Consensus       206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~  285 (636)
T KOG2394|consen  206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR  285 (636)
T ss_pred             HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccce
Confidence            3211111222223478999999994 44566677899999997631              1111111            1


Q ss_pred             cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          140 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      .+...+.|...+|+|||++||+.+.||.++|||..+.+++..++..-+...|++|+|||+||++|+  .-+.||.+...+
T Consensus       286 w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR  365 (636)
T KOG2394|consen  286 WHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR  365 (636)
T ss_pred             eEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence            112235788899999999999999999999999999998888877778899999999999999999  339999997654


Q ss_pred             C
Q 026679          218 N  218 (235)
Q Consensus       218 ~  218 (235)
                      +
T Consensus       366 V  366 (636)
T KOG2394|consen  366 V  366 (636)
T ss_pred             E
Confidence            3

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=8.6e-15  Score=113.33  Aligned_cols=172  Identities=17%  Similarity=0.202  Sum_probs=117.8

Q ss_pred             ceeEEEeecCCCeeEEE-eccc--eEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecC-CeEEEE--eccCCCC
Q 026679           16 RVISLCMSPVNDSFMSG-SLDH--SVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEA-GAIKLF--DSRSYDK   88 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~-~~d~--~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d-g~v~i~--d~~~~~~   88 (235)
                      .+....|+|||+.|+.. +.+|  .|++||+++++......... .....|+|+|+.|+..+.+ +...+|  |+.+++.
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            34568999999987754 4444  58899998877655544433 2348999999988777654 444555  5554332


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEecCC---CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                           ..+...........|+|||++++..+.+   ..|.+||+.+++... +...   .......|+|||++|+.++.+
T Consensus       324 -----~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~---~~~~~p~~SpDG~~i~~~s~~  394 (429)
T PRK03629        324 -----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT---FLDETPSIAPNGTMVIYSSSQ  394 (429)
T ss_pred             -----EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC---CCCCCceECCCCCEEEEEEcC
Confidence                 1222233345678899999998876543   358899998876543 2211   123457899999999988876


Q ss_pred             Cc---EEEEEcCCCceeeeecCCCcceeEEEeecC
Q 026679          166 GT---LHAWNINTRNEVACWNGNIGVVACLKWAPR  197 (235)
Q Consensus       166 g~---i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  197 (235)
                      +.   +.++++ +++....+..|.+.+...+|+|-
T Consensus       395 ~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        395 GMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence            54   677777 56666777778888999999873

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=9.3e-17  Score=118.04  Aligned_cols=189  Identities=13%  Similarity=0.150  Sum_probs=151.3

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCcee
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT   93 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~   93 (235)
                      ..|.++.|-.+.+++|.+ ....++||| ..|..++.++.+... -+.|-|..-+|++++..|.++--|+.+++.    .
T Consensus       171 Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl----V  244 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL----V  244 (545)
T ss_pred             hhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhh----h
Confidence            467777777766666665 456899999 567777777766543 499999999999999999999999999875    3


Q ss_pred             EeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679           94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  173 (235)
                      ..+....+.+..++-+|-...+-+|..+|+|.+|.....+++..+  -.|.++|.++++.++|+|+++.+.|..++|||+
T Consensus       245 a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi--LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl  322 (545)
T KOG1272|consen  245 ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI--LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL  322 (545)
T ss_pred             HHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH--HhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence            333334466777888888888889999999999999888877544  456678999999999999999999999999999


Q ss_pred             CCCceeeeecCCCcceeEEEeecCCCEEEEcccceEEee
Q 026679          174 NTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI  212 (235)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~  212 (235)
                      ++...+.++.. ..+...+++|..|.+.++-+..+.||.
T Consensus       323 R~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  323 RNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWK  360 (545)
T ss_pred             ccccccceeec-CCCccccccccccceeeecCCeeeeeh
Confidence            99887777754 456788999987766555567799995

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.68  E-value=3.4e-15  Score=105.76  Aligned_cols=184  Identities=17%  Similarity=0.182  Sum_probs=126.6

Q ss_pred             EEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEE-EEecCCeEEEEeccCCCCCCceeEee
Q 026679           19 SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLV   96 (235)
Q Consensus        19 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~   96 (235)
                      -.+|||+|+++|+++.. .+.|-|.++-+..+.+..-. +.-+.|..+..+++ ....++.|.+|++...+.    ..+.
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew----~ckI   87 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW----YCKI   87 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee----EEEe
Confidence            35799999999999876 78888888777666554433 33388888776655 456788999999987664    6667


Q ss_pred             cCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC----------
Q 026679           97 GGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD----------  165 (235)
Q Consensus        97 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------  165 (235)
                      .....++..++|+|||+.++.. .-+-+|.+|.+.+.+.... +...  ..+..++|+|||++.+..+..          
T Consensus        88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK--~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPK--TNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccc--cCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence            7778889999999999776655 4588999999988765533 2222  235778999999988766531          


Q ss_pred             --------------------------CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEe
Q 026679          166 --------------------------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFW  211 (235)
Q Consensus       166 --------------------------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw  211 (235)
                                                ..+.|||.--.-.+..+. ..-.+..++|+|.+++|+.|+  +.++|.
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvl  237 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVL  237 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhh
Confidence                                      223444422111111111 123577788888888888887  445554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.68  E-value=4.1e-14  Score=106.82  Aligned_cols=216  Identities=17%  Similarity=0.192  Sum_probs=136.8

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEe-cCCeEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAM-EAGAIKL   80 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-~dg~v~i   80 (235)
                      +++.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+..++....+. ++++++|++++++. .++.+.+
T Consensus        25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v  104 (369)
T PF02239_consen   25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSV  104 (369)
T ss_dssp             T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred             CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeE
Confidence            456667776554444557899999999999999999999999999999988766544 99999999988775 5899999


Q ss_pred             EeccCCCCCCc--------------------------eeEeec---------------------CCCcceeEEEEccCCC
Q 026679           81 FDSRSYDKGPF--------------------------DTFLVG---------------------GDTAEVCDIKFSNDGK  113 (235)
Q Consensus        81 ~d~~~~~~~~~--------------------------~~~~~~---------------------~~~~~v~~~~~~~~~~  113 (235)
                      +|.++.+....                          ....+.                     ..........|+|+++
T Consensus       105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr  184 (369)
T PF02239_consen  105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR  184 (369)
T ss_dssp             EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred             eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence            99876432100                          000000                     0112344678899998


Q ss_pred             eEEEe-cCCCcEEEEEcCCCceeeeeccCC---------------------------------------C----------
Q 026679          114 SMLLT-TTNNNIYVLDAYGGEKRCGFSLEP---------------------------------------S----------  143 (235)
Q Consensus       114 ~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~---------------------------------------~----------  143 (235)
                      +++++ ..++.|.++|..+++.........                                       +          
T Consensus       185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~  264 (369)
T PF02239_consen  185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT  264 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred             eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence            87664 446678888887665543221000                                       0          


Q ss_pred             ---CCcceeeEEeCCCcEEEEe----CCCCcEEEEEcCCCceeeeecCC-CcceeEEEeecCCCEEEEcc---c-ceEEe
Q 026679          144 ---PNTNTEATFTPDGQYVVSG----SGDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAAS---S-VLSFW  211 (235)
Q Consensus       144 ---~~~i~~~~~~~~~~~l~~~----~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~---~-~i~iw  211 (235)
                         .+.-.-+..+|+++++.+.    ...+.|.++|.++.+.+..+... ...+..+.|+++|+.+..+.   + .|.+|
T Consensus       265 I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~  344 (369)
T PF02239_consen  265 IPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY  344 (369)
T ss_dssp             EE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred             EECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence               0111335679999999887    44588999999999877777532 23588999999999887775   3 69999


Q ss_pred             eCCCCCC
Q 026679          212 IPNPSSN  218 (235)
Q Consensus       212 ~~~~~~~  218 (235)
                      |..+.+.
T Consensus       345 D~~Tl~~  351 (369)
T PF02239_consen  345 DAKTLKE  351 (369)
T ss_dssp             ETTTTEE
T ss_pred             ECCCcEE
Confidence            9877543

...

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.68  E-value=1e-15  Score=105.13  Aligned_cols=158  Identities=13%  Similarity=0.143  Sum_probs=114.7

Q ss_pred             ccceeEEEeec-CCC--eeEEEeccceEEEEecCcceeeeee----------eccCCce--EEEcCCCCEEEEEecCCeE
Q 026679           14 KERVISLCMSP-VND--SFMSGSLDHSVRIWDLRVNACQGIL----------RLRGRPT--VAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus        14 ~~~v~~~~~~~-~~~--~l~s~~~d~~i~vwd~~~~~~~~~~----------~~~~~~~--~~~~~~~~~l~~~~~dg~v   78 (235)
                      .+.+.|..+.. ++.  ++++|-.+|.+.+||+.++..+-.+          ..+..++  +.+.+.-..=++|+.+..+
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl  229 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL  229 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence            35666666533 333  4677888999999999887433222          2333333  5555554555677777788


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      ..|++..............-.+-.+..+..-||++.+++++.|++|++|..++.+++..++.|.  ..|++++|+|+...
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs--agvn~vAfspd~~l  307 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS--AGVNAVAFSPDCEL  307 (323)
T ss_pred             eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh--cceeEEEeCCCCch
Confidence            8888765422111111112223457888999999999999999999999999999998877665  66999999999999


Q ss_pred             EEEeCCCCcEEEEEc
Q 026679          159 VVSGSGDGTLHAWNI  173 (235)
Q Consensus       159 l~~~~~dg~i~v~d~  173 (235)
                      +|+++.|+.|.+|++
T Consensus       308 mAaaskD~rISLWkL  322 (323)
T KOG0322|consen  308 MAAASKDARISLWKL  322 (323)
T ss_pred             hhhccCCceEEeeec
Confidence            999999999999986

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=3.5e-14  Score=99.99  Aligned_cols=158  Identities=11%  Similarity=0.247  Sum_probs=122.8

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecC-cceeeeeeeccCCc--eEEEcCCC--CEEEE-EecCCeEEEEeccCC
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-VNACQGILRLRGRP--TVAFDQQG--LVFAV-AMEAGAIKLFDSRSY   86 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~--~~~~~~~~--~~l~~-~~~dg~v~i~d~~~~   86 (235)
                      ...+|.++.+.++  +++..- ++.|+||... +.+.++.+.....+  .+++.|..  .+|+. |-.-|.|++-|+...
T Consensus        93 f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~  169 (346)
T KOG2111|consen   93 FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST  169 (346)
T ss_pred             eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence            3467888888753  455443 5789999987 45666666544422  35566632  33333 345699999999876


Q ss_pred             CCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCc-EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                      ...  .......|.+.|.|++.+.+|..+|+++..|+ |++||..+|+.++++........|.+++|||+..+|+++++.
T Consensus       170 ~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK  247 (346)
T KOG2111|consen  170 KPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK  247 (346)
T ss_pred             CcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence            543  23456689999999999999999999999887 899999999999998877777889999999999999999999


Q ss_pred             CcEEEEEcCC
Q 026679          166 GTLHAWNINT  175 (235)
Q Consensus       166 g~i~v~d~~~  175 (235)
                      |+++||.++.
T Consensus       248 gTlHiF~l~~  257 (346)
T KOG2111|consen  248 GTLHIFSLRD  257 (346)
T ss_pred             CeEEEEEeec
Confidence            9999999875

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=4.1e-14  Score=101.44  Aligned_cols=198  Identities=14%  Similarity=0.132  Sum_probs=127.7

Q ss_pred             cccccceeEEEeecCCCeeEEEec-cceEEEEecCcceeeeeee-c-cCCceEEEcCCCCEEEEEecCCeEEEEeccCCC
Q 026679           11 KGHKERVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNACQGILR-L-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD   87 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~   87 (235)
                      .|| .+|++|+|.+||..+++++. |..|.|||..++..+.... . .+...+.|+||+.+|+++.-|+..++|+....-
T Consensus       193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w  271 (445)
T KOG2139|consen  193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW  271 (445)
T ss_pred             CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc
Confidence            456 79999999999999998875 6789999999988766652 2 334459999999999999999999999654322


Q ss_pred             CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce----e------e---e-----eccCCC----CC
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK----R------C---G-----FSLEPS----PN  145 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~------~---~-----~~~~~~----~~  145 (235)
                      .    .....-..+.|...+|+|.|+.|+..+.. .-.+|.+.-.+.    .      .   .     ......    .+
T Consensus       272 t----~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cg  346 (445)
T KOG2139|consen  272 T----KERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCG  346 (445)
T ss_pred             e----ecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccC
Confidence            1    11111223489999999999987765542 223343321100    0      0   0     000111    25


Q ss_pred             cceeeEEeCCCcEEEEeCCCC--------cEEEEEcCCCceeeeec-C--CCcceeEEEeec---CCCEEEEc-c-cceE
Q 026679          146 TNTEATFTPDGQYVVSGSGDG--------TLHAWNINTRNEVACWN-G--NIGVVACLKWAP---RRAMFVAA-S-SVLS  209 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~dg--------~i~v~d~~~~~~~~~~~-~--~~~~v~~~~~~~---~~~~l~~~-~-~~i~  209 (235)
                      .+.+++|.|.|.+|++.-..+        .|..||.+....+.-.. +  .......|.|+|   ++.+|..+ + |.+.
T Consensus       347 eaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq  426 (445)
T KOG2139|consen  347 EAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQ  426 (445)
T ss_pred             ccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceE
Confidence            688999999999999865433        37778876554432221 1  122356677776   45565554 2 6666


Q ss_pred             EeeCC
Q 026679          210 FWIPN  214 (235)
Q Consensus       210 iw~~~  214 (235)
                      -|.+.
T Consensus       427 ~ypl~  431 (445)
T KOG2139|consen  427 RYPLT  431 (445)
T ss_pred             eeeeE
Confidence            66654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.65  E-value=1.3e-14  Score=116.18  Aligned_cols=193  Identities=16%  Similarity=0.186  Sum_probs=155.2

Q ss_pred             eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce------EEEcCCCCEEEEEecCCeEEEEeccCCCCCC
Q 026679           17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT------VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP   90 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~   90 (235)
                      |....+..+...++.+..+..+.+||...+.....+.......      +..+++.-++++|+.-+.+.+|+....+. +
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~-p  168 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK-P  168 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-c
Confidence            3444444556778888888999999998777666665544321      45677788899999999999999984332 2


Q ss_pred             ceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEE
Q 026679           91 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA  170 (235)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  170 (235)
                         ..+.+|.+.+..+.++-||+++++.++|.++++|++.+.+... ...-+|...+..+.|.|+  .++++++|.+.++
T Consensus       169 ---~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv  242 (967)
T KOG0974|consen  169 ---IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPN--RIITVGEDCTCRV  242 (967)
T ss_pred             ---ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccc--eeEEeccceEEEE
Confidence               2577999999999999999999999999999999999988765 234467788999999998  9999999999999


Q ss_pred             EEcCCCceeeeecCCCc-ceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          171 WNINTRNEVACWNGNIG-VVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       171 ~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      |+. +++.+..+..|.. .|..++..++...+++++  +.+++|++....
T Consensus       243 W~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  243 WGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             Eec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence            976 5666668887754 799999999988888887  789999987643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=2.3e-13  Score=105.92  Aligned_cols=173  Identities=20%  Similarity=0.261  Sum_probs=117.5

Q ss_pred             ceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEec---CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc
Q 026679           36 HSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAME---AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN  110 (235)
Q Consensus        36 ~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  110 (235)
                      ..|.++|.+.... ..+..+..  ...+|+|+|+.|+..+.   +..|.+||+.+++.     ..+..+...+...+|+|
T Consensus       182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-----~~l~~~~g~~~~~~~SP  255 (435)
T PRK05137        182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-----ELVGNFPGMTFAPRFSP  255 (435)
T ss_pred             eEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----EEeecCCCcccCcEECC
Confidence            4788888754443 33433333  33899999998888764   46899999987653     22334455677889999


Q ss_pred             CCCeEEE-ecCCC--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-C--CcEEEEEcCCCceeeeecC
Q 026679          111 DGKSMLL-TTTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-D--GTLHAWNINTRNEVACWNG  184 (235)
Q Consensus       111 ~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~v~d~~~~~~~~~~~~  184 (235)
                      ||+.|+. .+.++  .|++||+.+++....   ..+........|+|||+.|+..+. +  ..|+++|+..++.. .+..
T Consensus       256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~L---t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~  331 (435)
T PRK05137        256 DGRKVVMSLSQGGNTDIYTMDLRSGTTTRL---TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF  331 (435)
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCceEEc---cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec
Confidence            9998764 44444  488889888765432   223344567899999999887653 3  36888898665543 3433


Q ss_pred             CCcceeEEEeecCCCEEEEcc---c--ceEEeeCCCCCC
Q 026679          185 NIGVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSSN  218 (235)
Q Consensus       185 ~~~~v~~~~~~~~~~~l~~~~---~--~i~iw~~~~~~~  218 (235)
                      +...+....|+|+|+.|+..+   +  .+.+|++++...
T Consensus       332 ~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~  370 (435)
T PRK05137        332 GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE  370 (435)
T ss_pred             CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence            445567789999999998764   2  477788765443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=4.3e-14  Score=102.05  Aligned_cols=174  Identities=14%  Similarity=0.176  Sum_probs=131.5

Q ss_pred             EEEeecCC-CeeEEEecc--ceEEEEecCcceeeeeeeccC-------Cce----EEEcCC--CCEEEEEecCCeEEEEe
Q 026679           19 SLCMSPVN-DSFMSGSLD--HSVRIWDLRVNACQGILRLRG-------RPT----VAFDQQ--GLVFAVAMEAGAIKLFD   82 (235)
Q Consensus        19 ~~~~~~~~-~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~-------~~~----~~~~~~--~~~l~~~~~dg~v~i~d   82 (235)
                      .|.-++.. ..+++|+..  ..+++||++..+.+..-+...       +++    +.|-+.  ...|++++.-+.+++||
T Consensus       153 ~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YD  232 (412)
T KOG3881|consen  153 DVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYD  232 (412)
T ss_pred             eeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEec
Confidence            33334433 456779988  889999998875444332211       112    667776  78999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      .+.+.. |...  +.-...+++++...|+++.++++...+.+..||++.++.... .+.+..+.++++..+|.+++|+++
T Consensus       233 t~~qRR-PV~~--fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~-~~kg~tGsirsih~hp~~~~las~  308 (412)
T KOG3881|consen  233 TRHQRR-PVAQ--FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC-GLKGITGSIRSIHCHPTHPVLASC  308 (412)
T ss_pred             CcccCc-ceeE--eccccCcceeeeecCCCcEEEEecccchhheecccCceeecc-ccCCccCCcceEEEcCCCceEEee
Confidence            996553 3333  334467899999999999999999999999999999887654 345566789999999999999999


Q ss_pred             CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecC
Q 026679          163 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR  197 (235)
Q Consensus       163 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  197 (235)
                      +-|..++|+|+++.+++.... -.+.+++|-+.++
T Consensus       309 GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  309 GLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             ccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence            999999999999977665543 3456777777664

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.63  E-value=5.6e-13  Score=100.73  Aligned_cols=187  Identities=15%  Similarity=0.111  Sum_probs=128.1

Q ss_pred             Cee-EEEeccceEEEEecCcceeeeeeeccCC-ce-EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcce
Q 026679           27 DSF-MSGSLDHSVRIWDLRVNACQGILRLRGR-PT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV  103 (235)
Q Consensus        27 ~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v  103 (235)
                      +++ ++-..++.|.+.|..+.+.+..+..... .. +.++||++++++++.||.|.++|+.+.+.    ..... .....
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~----v~~i~-~G~~~   80 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV----VATIK-VGGNP   80 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE----EEEEE--SSEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE----EEEEe-cCCCc
Confidence            444 4566789999999999999999987543 23 78999999999999999999999998763    22222 23456


Q ss_pred             eEEEEccCCCeEEEec-CCCcEEEEEcCCCceeeeeccCC-----CCCcceeeEEeCCCcE-EEEeCCCCcEEEEEcCCC
Q 026679          104 CDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEP-----SPNTNTEATFTPDGQY-VVSGSGDGTLHAWNINTR  176 (235)
Q Consensus       104 ~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~-l~~~~~dg~i~v~d~~~~  176 (235)
                      .++++++||++++++. ..+.+.++|.++.+.++.+....     ....+..+..+|.... +++--+.+.|.+.|..+.
T Consensus        81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            7899999999998776 58999999999999888765432     2245677888888774 455555688988898766


Q ss_pred             ceee-eecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679          177 NEVA-CWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN  218 (235)
Q Consensus       177 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~  218 (235)
                      +.+. .............|+|++++++.+.   +.+-++|.++.++
T Consensus       161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~  206 (369)
T PF02239_consen  161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL  206 (369)
T ss_dssp             SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred             cccceeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence            5432 2222345678899999999988764   6688888876544

...

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.5e-13  Score=106.88  Aligned_cols=177  Identities=20%  Similarity=0.127  Sum_probs=116.4

Q ss_pred             ceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecC---CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC
Q 026679           36 HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND  111 (235)
Q Consensus        36 ~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  111 (235)
                      ..|.+||.............. ....+|+|+|+.|+..+.+   ..+.+||+.+++.     ..+..........+|+||
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-----~~l~~~~g~~~~~~~SpD  258 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-----ELVASFRGINGAPSFSPD  258 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----EEeccCCCCccCceECCC
Confidence            468899986444433333222 2348999999998887643   4699999977553     122223344557899999


Q ss_pred             CCeEEEe-cCCC--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CCc--EEEEEcCCCceeeeecCC
Q 026679          112 GKSMLLT-TTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGT--LHAWNINTRNEVACWNGN  185 (235)
Q Consensus       112 ~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~  185 (235)
                      |+.++.. +.++  .|++||+.+++.... .  .+.......+|+|||++|+..+. +|.  |+++|+.+++.. .+..+
T Consensus       259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~l-t--~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~  334 (433)
T PRK04922        259 GRRLALTLSRDGNPEIYVMDLGSRQLTRL-T--NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQ  334 (433)
T ss_pred             CCEEEEEEeCCCCceEEEEECCCCCeEEC-c--cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecC
Confidence            9987643 4444  599999988775432 2  22233467899999998887654 444  777777666543 23223


Q ss_pred             CcceeEEEeecCCCEEEEcc---c--ceEEeeCCCCCCCCC
Q 026679          186 IGVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSSNSTD  221 (235)
Q Consensus       186 ~~~v~~~~~~~~~~~l~~~~---~--~i~iw~~~~~~~~~~  221 (235)
                      ......++|+|+|++|+..+   +  .+.+|++.++....+
T Consensus       335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L  375 (433)
T PRK04922        335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL  375 (433)
T ss_pred             CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC
Confidence            33455789999999998764   2  488999877654433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=4.3e-13  Score=104.04  Aligned_cols=176  Identities=15%  Similarity=0.117  Sum_probs=109.4

Q ss_pred             ceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecC---CeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc
Q 026679           36 HSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN  110 (235)
Q Consensus        36 ~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  110 (235)
                      ..|.++|... .....+..+.  ....+|+|+|+.|+..+.+   ..|.+||+.+++.     ..+..........+|+|
T Consensus       176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-----~~l~~~~g~~~~~~~SP  249 (427)
T PRK02889        176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-----RVVANFKGSNSAPAWSP  249 (427)
T ss_pred             cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-----EEeecCCCCccceEECC
Confidence            4577777643 3323332332  3348999999998887643   4699999987653     12222334556889999


Q ss_pred             CCCeEEE-ecCCCcEEEE--EcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CCcEEEEEc--CCCceeeeecC
Q 026679          111 DGKSMLL-TTTNNNIYVL--DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNI--NTRNEVACWNG  184 (235)
Q Consensus       111 ~~~~l~~-~~~d~~i~~~--d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~--~~~~~~~~~~~  184 (235)
                      ||+.|+. .+.++...+|  |+..+... .+.  .+........|+|||+.|+..+. +|...+|.+  .+++.. .+..
T Consensus       250 DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt--~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~  325 (427)
T PRK02889        250 DGRTLAVALSRDGNSQIYTVNADGSGLR-RLT--QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTF  325 (427)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCCcE-ECC--CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEec
Confidence            9998875 5667765555  55544432 222  22234566889999998876554 455555554  444432 2222


Q ss_pred             CCcceeEEEeecCCCEEEEcc--c---ceEEeeCCCCCCCCC
Q 026679          185 NIGVVACLKWAPRRAMFVAAS--S---VLSFWIPNPSSNSTD  221 (235)
Q Consensus       185 ~~~~v~~~~~~~~~~~l~~~~--~---~i~iw~~~~~~~~~~  221 (235)
                      ........+|+|+|++|+..+  +   .+.+|++.++....+
T Consensus       326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l  367 (427)
T PRK02889        326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL  367 (427)
T ss_pred             CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc
Confidence            223345678999999998765  2   489999877654443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.59  E-value=2.1e-13  Score=97.34  Aligned_cols=202  Identities=13%  Similarity=0.193  Sum_probs=139.5

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcce-----eeeeeeccC--------------CceEEEcCCC--CEEEEE
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-----CQGILRLRG--------------RPTVAFDQQG--LVFAVA   72 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~--------------~~~~~~~~~~--~~l~~~   72 (235)
                      ...|.++.|...|.+||+|..+|.|.++.-+...     ....++.|.              +..+.|.+++  ..++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3578899999999999999999999999643221     222233332              1227787754  568888


Q ss_pred             ecCCeEEEEeccCCCCCC------------------ce--------------eEeecCCCcceeEEEEccCCCeEEEecC
Q 026679           73 MEAGAIKLFDSRSYDKGP------------------FD--------------TFLVGGDTAEVCDIKFSNDGKSMLLTTT  120 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~~~------------------~~--------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~  120 (235)
                      +.|.++++|.++......                  ..              ......|...|.++.++.|++.++++ +
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence            899999999887543221                  00              01112467788999999999877655 5


Q ss_pred             CCcEEEEEcCCCc-eeeeeccCCC-----CCcceeeEEeC-CCcEEEEeCCCCcEEEEEcCCCce------eee------
Q 026679          121 NNNIYVLDAYGGE-KRCGFSLEPS-----PNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNE------VAC------  181 (235)
Q Consensus       121 d~~i~~~d~~~~~-~~~~~~~~~~-----~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~------~~~------  181 (235)
                      |=.|.+|++.--. ........++     ..-|++..|+| ..+.++..+..|+|++-|++...+      +..      
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            7789999986432 2222222222     25578889999 467788888999999999984321      111      


Q ss_pred             ----ecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679          182 ----WNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS  216 (235)
Q Consensus       182 ----~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~  216 (235)
                          +..--..|..+.|+++|+++++-+ -++++||++..
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme  303 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNME  303 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecccc
Confidence                111134688999999999999999 89999999654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.59  E-value=1.6e-14  Score=121.48  Aligned_cols=195  Identities=19%  Similarity=0.268  Sum_probs=152.3

Q ss_pred             cccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC---ceEEEcCCCCEEEEEecCCeEEEEeccCCC
Q 026679           11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR---PTVAFDQQGLVFAVAMEAGAIKLFDSRSYD   87 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~   87 (235)
                      +.|-..|.++.-+|...+.+||+.||.+++|....++.+..++..+.   ..+.|+.+|+.+..+..||.+.+|.+..  
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--
Confidence            34556788888899889999999999999999988888877765443   2288999999999999999999999872  


Q ss_pred             CCCceeEeecCCCcceeEEEEccCCCeEEEec---CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                         ........|......+.|-.  ..+++++   .++.+.+||.--.....-.. ..|.+.++++++-|..+.|++|+.
T Consensus      2283 ---k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2283 ---KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred             ---cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCC
Confidence               23566677888888888875  4566654   47889999965432222222 556677999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC-CCCCCCC
Q 026679          165 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS-SNSTDES  223 (235)
Q Consensus       165 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~-~~~~~~~  223 (235)
                      +|.|++||++..+.+++++.         +. ...++++++  |+++||++..- .+..++.
T Consensus      2357 ~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            99999999999888888764         44 567888887  99999999754 3344443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=3.5e-12  Score=98.12  Aligned_cols=195  Identities=14%  Similarity=0.122  Sum_probs=127.4

Q ss_pred             ceeEEEeecCCCe-eEEEec---cceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEe-cC--CeEEEEeccCCC
Q 026679           16 RVISLCMSPVNDS-FMSGSL---DHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAM-EA--GAIKLFDSRSYD   87 (235)
Q Consensus        16 ~v~~~~~~~~~~~-l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~-~d--g~v~i~d~~~~~   87 (235)
                      .+....|+|||+. ++..+.   +..|.++|+.+++........... ...|+|||+.++... .+  ..|.++|+.++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            6678999999984 554443   356899999888776665544433 378999998776543 33  467777876654


Q ss_pred             CCCceeEeecCCCcceeEEEEccCCCeEEEecCC-C--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                      .     ..+..+........|+|||+.|+..+.. +  .|+++|+.+++..+... ...    ....|+|+|++|+....
T Consensus       269 ~-----~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~----~~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        269 L-----TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK----NNSSVSTYKNYIVYSSR  338 (419)
T ss_pred             E-----EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC----cCceECCCCCEEEEEEc
Confidence            2     1222222223456799999988877642 2  68888988777643322 221    12489999999876654


Q ss_pred             C---------CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCCCCC
Q 026679          165 D---------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNSTDE  222 (235)
Q Consensus       165 d---------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~~~~  222 (235)
                      .         ..|.+.|+.++... .+... .......|+|||+.|+...     ..+.+.++++.....++
T Consensus       339 ~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~  408 (419)
T PRK04043        339 ETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP  408 (419)
T ss_pred             CCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence            3         36888898777643 33322 2334689999999887764     33777777776555444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.58  E-value=6.1e-12  Score=94.99  Aligned_cols=198  Identities=17%  Similarity=0.241  Sum_probs=129.4

Q ss_pred             ceeEEEeecCCCeeEEEec-cceEEEEecCc-ceeeee---eec------------cCCceEEEcCCCCEEEEEec-CCe
Q 026679           16 RVISLCMSPVNDSFMSGSL-DHSVRIWDLRV-NACQGI---LRL------------RGRPTVAFDQQGLVFAVAME-AGA   77 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~-~~~~~~---~~~------------~~~~~~~~~~~~~~l~~~~~-dg~   77 (235)
                      .-..++++|++++|+++.. +|.|.++++.. +.....   +..            .....+.++|+++++++... ...
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~  167 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADR  167 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTE
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCE
Confidence            4456889999999888864 89999999976 332222   211            01124899999998887653 458


Q ss_pred             EEEEeccCCCCC--CceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcC--CCceee--eeccC---C-CCCc
Q 026679           78 IKLFDSRSYDKG--PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAY--GGEKRC--GFSLE---P-SPNT  146 (235)
Q Consensus        78 v~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~--~~~~~~--~~~~~---~-~~~~  146 (235)
                      |.+|++......  ..... ........+.+.|+|+++++++..+ ++.|.++++.  ++....  .....   . ....
T Consensus       168 v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  168 VYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence            999999775521  11111 2234456789999999998876654 7889999988  443222  11111   1 1124


Q ss_pred             ceeeEEeCCCcEEEEeC-CCCcEEEEEcC--CCc--eeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCC
Q 026679          147 NTEATFTPDGQYVVSGS-GDGTLHAWNIN--TRN--EVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPN  214 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~-~dg~i~v~d~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~  214 (235)
                      ...++++|||++|+++. ..+.|.+|++.  +++  .+..+.......+.++++|+|++|+++.   +.|.+|+++
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            67899999999987765 46789999993  233  2333433344589999999999999986   679999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.58  E-value=2.6e-12  Score=99.82  Aligned_cols=174  Identities=18%  Similarity=0.203  Sum_probs=115.7

Q ss_pred             ceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecC---CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC
Q 026679           36 HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND  111 (235)
Q Consensus        36 ~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  111 (235)
                      ..|.++|.............. ....+|+|+|+.++.+..+   ..|++||+.++..     .....+...+..++|+||
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-----~~~~~~~~~~~~~~~spD  244 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-----EKVASFPGMNGAPAFSPD  244 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-----EEeecCCCCccceEECCC
Confidence            358888875444433333222 2337899999999887654   4799999987543     122233455667899999


Q ss_pred             CCeEEEe-cCC--CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CC--cEEEEEcCCCceeeeecCC
Q 026679          112 GKSMLLT-TTN--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGN  185 (235)
Q Consensus       112 ~~~l~~~-~~d--~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~  185 (235)
                      |+.|+.. +.+  ..|++||+.+++......   +........|+|+|+.|+..+. ++  .|+++|+.+++.. .+..+
T Consensus       245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~---~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~  320 (417)
T TIGR02800       245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN---GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR  320 (417)
T ss_pred             CCEEEEEECCCCCccEEEEECCCCCEEECCC---CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC
Confidence            9977654 333  359999998776543322   2233456789999998876654 33  5888888766543 34334


Q ss_pred             CcceeEEEeecCCCEEEEcc--c---ceEEeeCCCCCC
Q 026679          186 IGVVACLKWAPRRAMFVAAS--S---VLSFWIPNPSSN  218 (235)
Q Consensus       186 ~~~v~~~~~~~~~~~l~~~~--~---~i~iw~~~~~~~  218 (235)
                      ...+..+.|+|++++++.++  +   .+.+|++.+...
T Consensus       321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence            55677889999999998876  2   588888876543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=1.8e-13  Score=103.67  Aligned_cols=170  Identities=15%  Similarity=0.287  Sum_probs=135.2

Q ss_pred             CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-------------CceEEEcCCCC
Q 026679            1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-------------RPTVAFDQQGL   67 (235)
Q Consensus         1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~   67 (235)
                      |+.|+.+..|.--.+.++++..++...+|++|+.+|.|..||.+.......+....             +..+.|+.+|-
T Consensus       162 LEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL  241 (703)
T KOG2321|consen  162 LEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL  241 (703)
T ss_pred             ccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce
Confidence            57889999999888999999999998999999999999999998877666554321             33488998999


Q ss_pred             EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc
Q 026679           68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT  146 (235)
Q Consensus        68 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  146 (235)
                      .+++|..+|.+.+||+++.+.   ....-.+..-+|..+.|.+. +..-+.......+++||-.+|+....+...   ..
T Consensus       242 ~~aVGts~G~v~iyDLRa~~p---l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt---~~  315 (703)
T KOG2321|consen  242 HVAVGTSTGSVLIYDLRASKP---LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT---SD  315 (703)
T ss_pred             eEEeeccCCcEEEEEcccCCc---eeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecccc---CC
Confidence            999999999999999998764   22233344567889999774 233444556678999999999988766543   34


Q ss_pred             ceeeEEeCCCcEEEEeCCCCcEEEEEcCCC
Q 026679          147 NTEATFTPDGQYVVSGSGDGTLHAWNINTR  176 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  176 (235)
                      +..+++-|++-+++++.+++.+..|=+...
T Consensus       316 lND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  316 LNDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             cCceeeecCCceEEEecCCCcceeEEcccc
Confidence            888999999999999999988887776553

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.54  E-value=1.1e-12  Score=93.28  Aligned_cols=203  Identities=15%  Similarity=0.251  Sum_probs=133.3

Q ss_pred             hhcccccceeEEEeecCCCe-eEEEeccceEEEEecCcceeeeee-eccCCceEEEcCCCCEEEEEecC-----------
Q 026679            9 YFKGHKERVISLCMSPVNDS-FMSGSLDHSVRIWDLRVNACQGIL-RLRGRPTVAFDQQGLVFAVAMEA-----------   75 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d-----------   75 (235)
                      .++.-..++.+++|||+|+. |.+...|-.|.||.+.+.+....- ..+....++|+|+|++.+.++.-           
T Consensus        86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            34455678999999999954 667778999999999876654332 22334458888888887766532           


Q ss_pred             -------------------------CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC
Q 026679           76 -------------------------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY  130 (235)
Q Consensus        76 -------------------------g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~  130 (235)
                                               ..+.+||.--.-.    .. ...-.-.+..++|+|-+++|++|+.|+.+++.+--
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk----v~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK----VY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe----ee-eeeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence                                     1233333211100    00 11112457889999999999999999998886642


Q ss_pred             CCceee------------------------------------------------------------eec----cCCCCCc
Q 026679          131 GGEKRC------------------------------------------------------------GFS----LEPSPNT  146 (235)
Q Consensus       131 ~~~~~~------------------------------------------------------------~~~----~~~~~~~  146 (235)
                      +.+...                                                            ..+    .......
T Consensus       241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g  320 (447)
T KOG4497|consen  241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG  320 (447)
T ss_pred             eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence            211100                                                            000    0011234


Q ss_pred             ceeeEEeCCCcEEEEeCC--CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          147 NTEATFTPDGQYVVSGSG--DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +..++|++|..++++-.+  -+.+.+||++..+....+. ...+|....|+|....|+.+.  ..+++|.+....
T Consensus       321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~  394 (447)
T KOG4497|consen  321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR  394 (447)
T ss_pred             cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence            566899999999988755  3569999998877655554 567899999999887777665  458888876643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.54  E-value=1.8e-11  Score=90.94  Aligned_cols=195  Identities=12%  Similarity=0.120  Sum_probs=131.7

Q ss_pred             eecCCCeeEEEec----------cceEEEEecCcceeeeeeeccCC---------ceEEEcCCCCEEEEEe-c-CCeEEE
Q 026679           22 MSPVNDSFMSGSL----------DHSVRIWDLRVNACQGILRLRGR---------PTVAFDQQGLVFAVAM-E-AGAIKL   80 (235)
Q Consensus        22 ~~~~~~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~-~-dg~v~i   80 (235)
                      ++||++.|+.+..          +..|.+||..+.+.+..+.....         ..++++|+|+++++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999988776654          78999999999999988875432         2489999999999876 3 688999


Q ss_pred             EeccCCCCCC-------ceeEee----------cCC----------CcceeEE--------------EEcc-CCCeEEEe
Q 026679           81 FDSRSYDKGP-------FDTFLV----------GGD----------TAEVCDI--------------KFSN-DGKSMLLT  118 (235)
Q Consensus        81 ~d~~~~~~~~-------~~~~~~----------~~~----------~~~v~~~--------------~~~~-~~~~l~~~  118 (235)
                      .|+.+.+...       ...+..          .+.          .......              .|.+ +|+++++.
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence            9987644210       000000          000          0001111              2234 77766666


Q ss_pred             cCCCcEEEEEcCCCc-----eeeeeccC-----CCCCcceeeEEeCCCcEEEEeC----------CCCcEEEEEcCCCce
Q 026679          119 TTNNNIYVLDAYGGE-----KRCGFSLE-----PSPNTNTEATFTPDGQYVVSGS----------GDGTLHAWNINTRNE  178 (235)
Q Consensus       119 ~~d~~i~~~d~~~~~-----~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~v~d~~~~~~  178 (235)
                      .. |.|.+.|+....     ....+...     -.++.+.-++++|+++.+++..          ..+.|.++|..+++.
T Consensus       213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv  291 (352)
T TIGR02658       213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR  291 (352)
T ss_pred             cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence            65 999999965432     22222111     1233445599999999888742          124799999999999


Q ss_pred             eeeecCCCcceeEEEeecCCC-EEEEcc---cceEEeeCCCCCC
Q 026679          179 VACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPSSN  218 (235)
Q Consensus       179 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~---~~i~iw~~~~~~~  218 (235)
                      +..+.. ...+..++++||++ +|++..   +++.++|..+.+.
T Consensus       292 i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       292 LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence            988873 45889999999999 777665   7799999977643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.54  E-value=7.6e-13  Score=94.43  Aligned_cols=217  Identities=17%  Similarity=0.174  Sum_probs=158.8

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC-cceeee---eeeccCCceEEEcCCCCEEEEEecCCeEE
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-VNACQG---ILRLRGRPTVAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~   79 (235)
                      ..+++.++||.+.|+....-|...-+++.+.|.+++||--+ .++.-.   ........++.+.++...|++|-..|++.
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            35778899999999999888888889999999999999543 333322   22333445588999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC----------------------------
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG----------------------------  131 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~----------------------------  131 (235)
                      -+.+...-...........|...+..+-|+...+.+++.+.|..+..--.+.                            
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~  173 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH  173 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence            8877654333333444556777777777777667777766665432221111                            


Q ss_pred             -----------CceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCce-eeeecCCCcceeEEEeecCCC
Q 026679          132 -----------GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRA  199 (235)
Q Consensus       132 -----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~  199 (235)
                                 ..+.......+|.+.+.+++|.|....|.+|..|..+.+||+.-.+- ...+.+|...|..+...+.-+
T Consensus       174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~  253 (404)
T KOG1409|consen  174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR  253 (404)
T ss_pred             ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe
Confidence                       11112233456678899999999999999999999999999964433 456788999999999888888


Q ss_pred             EEEEcc--cceEEeeCCCCCCCC
Q 026679          200 MFVAAS--SVLSFWIPNPSSNST  220 (235)
Q Consensus       200 ~l~~~~--~~i~iw~~~~~~~~~  220 (235)
                      .+.+++  +.|.+|+++.....+
T Consensus       254 ~l~S~~edg~i~~w~mn~~r~et  276 (404)
T KOG1409|consen  254 QLISCGEDGGIVVWNMNVKRVET  276 (404)
T ss_pred             eeeeccCCCeEEEEeccceeecC
Confidence            888887  779999998765443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.53  E-value=5.7e-11  Score=85.64  Aligned_cols=202  Identities=16%  Similarity=0.244  Sum_probs=137.7

Q ss_pred             ccccceeEEEeecCCCeeEEEecc---ceEEEEecCc--ceeee--eeeccC-Cce-EEEcCCCCEEEEEec-CCeEEEE
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLD---HSVRIWDLRV--NACQG--ILRLRG-RPT-VAFDQQGLVFAVAME-AGAIKLF   81 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~--~~~~~--~~~~~~-~~~-~~~~~~~~~l~~~~~-dg~v~i~   81 (235)
                      .+.+..+-|+|+|++++|+++..+   |.|..|.++.  |+...  ...... .++ +++++++++++++.. .|.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            456778899999999999888654   6777777764  43322  222222 224 999999999888875 6899999


Q ss_pred             eccCCCCCCceeEeecCCCcc----------eeEEEEccCCCeEEEecC-CCcEEEEEcCCCceeeee--ccCCCCCcce
Q 026679           82 DSRSYDKGPFDTFLVGGDTAE----------VCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGF--SLEPSPNTNT  148 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~--~~~~~~~~i~  148 (235)
                      -++...... .......|...          +....+.|++++|++.+- -..|.+|++..++.....  ..... ...+
T Consensus       117 p~~~dG~l~-~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G-~GPR  194 (346)
T COG2706         117 PLQADGSLQ-PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG-AGPR  194 (346)
T ss_pred             EcccCCccc-cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC-CCcc
Confidence            987632111 11122223333          778889999999888764 456999999977654322  22222 3458


Q ss_pred             eeEEeCCCcEEEEeCC-CCcEEEEEcCCC-ceeeeecCC---------CcceeEEEeecCCCEEEEcc---cceEEeeCC
Q 026679          149 EATFTPDGQYVVSGSG-DGTLHAWNINTR-NEVACWNGN---------IGVVACLKWAPRRAMFVAAS---SVLSFWIPN  214 (235)
Q Consensus       149 ~~~~~~~~~~l~~~~~-dg~i~v~d~~~~-~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~  214 (235)
                      .+.|+|++++..+.++ +++|.+|..... ..+..++.+         ......|..+|||++|.++.   ..|.++.++
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            8999999999876665 889999998763 222333211         23567889999999999997   557777765


Q ss_pred             C
Q 026679          215 P  215 (235)
Q Consensus       215 ~  215 (235)
                      .
T Consensus       275 ~  275 (346)
T COG2706         275 P  275 (346)
T ss_pred             C
Confidence            3

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.52  E-value=5.1e-11  Score=90.04  Aligned_cols=199  Identities=16%  Similarity=0.207  Sum_probs=130.7

Q ss_pred             ceeEEEeecCCCeeEEEec----cceEEEEecCcc--e--eeeeee-ccCCce-EEEcCCCCEEEEEec-CCeEEEEecc
Q 026679           16 RVISLCMSPVNDSFMSGSL----DHSVRIWDLRVN--A--CQGILR-LRGRPT-VAFDQQGLVFAVAME-AGAIKLFDSR   84 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~--~--~~~~~~-~~~~~~-~~~~~~~~~l~~~~~-dg~v~i~d~~   84 (235)
                      ....++++|++++|++...    ++.|..|++...  +  .+.... ....++ ++++|++++|+++.. +|.+.++++.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            3456888999999988876    568999988764  3  333333 233445 999999999988874 8999999998


Q ss_pred             CCCCCCceeEee----------cCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCCCc--ee--eeeccCCCCCccee
Q 026679           85 SYDKGPFDTFLV----------GGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGE--KR--CGFSLEPSPNTNTE  149 (235)
Q Consensus        85 ~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~--~~--~~~~~~~~~~~i~~  149 (235)
                      ............          ........++.++|+++++++... ...|.+|++....  ..  ..+..... ...+.
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G-~GPRh  196 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG-SGPRH  196 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT-SSEEE
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC-CCCcE
Confidence            742211111111          112345678999999998887654 4579999997655  32  22333333 34688


Q ss_pred             eEEeCCCcEEEEe-CCCCcEEEEEcC--CCce--eeeecC----C--CcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          150 ATFTPDGQYVVSG-SGDGTLHAWNIN--TRNE--VACWNG----N--IGVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       150 ~~~~~~~~~l~~~-~~dg~i~v~d~~--~~~~--~~~~~~----~--~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                      +.|+|+++++++. -.++.|.++++.  ++..  +..+..    .  ......|.++|||++|.++.   +.|.+|+++.
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence            9999999988655 457889999988  3322  222211    1  12578899999999999886   6699999853

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.5e-11  Score=95.89  Aligned_cols=175  Identities=14%  Similarity=0.071  Sum_probs=112.3

Q ss_pred             eEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecC---CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCC
Q 026679           37 SVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG  112 (235)
Q Consensus        37 ~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  112 (235)
                      .|.++|.+.+.......... .....|+|+|+.|+..+.+   ..|.+||+.+++.     ..+...........|+|||
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----~~l~~~~g~~~~~~~SpDG  254 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----EQITNFEGLNGAPAWSPDG  254 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----EEccCCCCCcCCeEECCCC
Confidence            47778876554433333322 2337999999998876643   3688899987653     1222223345568999999


Q ss_pred             CeEEEe-cCCC--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CC--cEEEEEcCCCceeeeecCCC
Q 026679          113 KSMLLT-TTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNI  186 (235)
Q Consensus       113 ~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~  186 (235)
                      +.|+.. ..++  .|+++|+.+++.... .  .+........|+|||+.|+..+. +|  .|+++|+.+++... +....
T Consensus       255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~l-t--~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~  330 (430)
T PRK00178        255 SKLAFVLSKDGNPEIYVMDLASRQLSRV-T--NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVG  330 (430)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeEEc-c--cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCC
Confidence            988754 3444  688899988765432 2  22234566899999998876553 33  57788887776432 22122


Q ss_pred             cceeEEEeecCCCEEEEcc---c--ceEEeeCCCCCCCC
Q 026679          187 GVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSSNST  220 (235)
Q Consensus       187 ~~v~~~~~~~~~~~l~~~~---~--~i~iw~~~~~~~~~  220 (235)
                      .......|+|+|++|+..+   +  .+.+||+.++....
T Consensus       331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~  369 (430)
T PRK00178        331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI  369 (430)
T ss_pred             CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE
Confidence            2344678999999998775   2  37788887765443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.2e-11  Score=95.75  Aligned_cols=179  Identities=16%  Similarity=0.178  Sum_probs=111.4

Q ss_pred             cceeEEEeecCCCeeEEEec-----cceEEEEecCcc---eeeeeeecc-C-CceEEEcCCCCEEEEEe-cCCeEEEEec
Q 026679           15 ERVISLCMSPVNDSFMSGSL-----DHSVRIWDLRVN---ACQGILRLR-G-RPTVAFDQQGLVFAVAM-EAGAIKLFDS   83 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~-----d~~i~vwd~~~~---~~~~~~~~~-~-~~~~~~~~~~~~l~~~~-~dg~v~i~d~   83 (235)
                      +.....+|+|||+.|+..+.     |..+..|++..+   ......... . ....+|+|||+.|+..+ .+|...+|.+
T Consensus       231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            34456799999988776542     333445776643   333333322 1 23489999999877665 4665566644


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC---CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      ....... ....+......+....|+|||+.|+..+.+   ..|.+||+.+++.......   ...+....|+|||++|+
T Consensus       311 ~~~~~g~-~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~  386 (428)
T PRK01029        311 QIDPEGQ-SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLV  386 (428)
T ss_pred             ECccccc-ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---CCCccceEECCCCCEEE
Confidence            3211000 112222333456788999999998876543   4699999988876543221   23456789999999887


Q ss_pred             EeCC---CCcEEEEEcCCCceeeeecCCCcceeEEEeecCC
Q 026679          161 SGSG---DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR  198 (235)
Q Consensus       161 ~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~  198 (235)
                      ....   ...|+++|+.+++...... ..+.+...+|+|..
T Consensus       387 f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~  426 (428)
T PRK01029        387 YSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGAFP  426 (428)
T ss_pred             EEECCCCCceEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence            5432   3568899997776544333 44566778888753

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=3.1e-11  Score=94.12  Aligned_cols=174  Identities=17%  Similarity=0.095  Sum_probs=108.2

Q ss_pred             eEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecC-C--eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCC
Q 026679           37 SVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEA-G--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG  112 (235)
Q Consensus        37 ~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  112 (235)
                      .+.++|.............. .....|+|||+.|+..+.+ +  .|.++|+.+++.     ..+..........+|+|||
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-----~~lt~~~g~~~~~~wSPDG  273 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-----EKVTSFPGINGAPRFSPDG  273 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-----EEecCCCCCcCCeeECCCC
Confidence            57777865544333333222 2348999999988876543 3  588888877543     1111222334468999999


Q ss_pred             CeEEEe-cCCCc--EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CC--cEEEEEcCCCceeeeecCCC
Q 026679          113 KSMLLT-TTNNN--IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNI  186 (235)
Q Consensus       113 ~~l~~~-~~d~~--i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~  186 (235)
                      +.|+.. +.++.  |+++|+.+++.....   .+........|+|||++|+..+. ++  .|+++|+.+++... +....
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt---~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g  349 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKALTRIT---RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEG  349 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCCeEECc---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCC
Confidence            988764 44554  888898877654322   22234567899999998876553 33  47777887776433 22122


Q ss_pred             cceeEEEeecCCCEEEEcc---c--ceEEeeCCCCCCC
Q 026679          187 GVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSSNS  219 (235)
Q Consensus       187 ~~v~~~~~~~~~~~l~~~~---~--~i~iw~~~~~~~~  219 (235)
                      ......+|+|||++|+..+   +  .+.+++++++...
T Consensus       350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~  387 (448)
T PRK04792        350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ  387 (448)
T ss_pred             CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence            2334578999999988765   3  3555676665443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.48  E-value=5e-12  Score=103.51  Aligned_cols=176  Identities=14%  Similarity=0.212  Sum_probs=122.8

Q ss_pred             EecCcceeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEEEEeccCCCCCC-c--eeEeecCCCcceeEEEEccCCCe
Q 026679           41 WDLRVNACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGP-F--DTFLVGGDTAEVCDIKFSNDGKS  114 (235)
Q Consensus        41 wd~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~  114 (235)
                      |+. .|..+..+..|...+  ++.++ ++.+|++|+.||+|++|+.+...... .  ...........+.++...+.++.
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            554 455666666665444  55544 66999999999999999998755431 1  12233335678899999999999


Q ss_pred             EEEecCCCcEEEEEcCCCc-------eeeeeccCCCCCcceee-EEeC-CCc-EEEEeCCCCcEEEEEcCCCceeeeec-
Q 026679          115 MLLTTTNNNIYVLDAYGGE-------KRCGFSLEPSPNTNTEA-TFTP-DGQ-YVVSGSGDGTLHAWNINTRNEVACWN-  183 (235)
Q Consensus       115 l~~~~~d~~i~~~d~~~~~-------~~~~~~~~~~~~~i~~~-~~~~-~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~-  183 (235)
                      +|+++.||.|.+.++....       .......+.. +.+.+| +|.. .+. .|+.+...+.|..||++.......++ 
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKD-GVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCC-CceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence            9999999999999986521       1111122222 333333 3332 233 77888888999999998877655544 


Q ss_pred             -CCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          184 -GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       184 -~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                       ...+.|++++.+|.+.+++.|.  |.+.+||++-...
T Consensus      1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~ 1229 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP 1229 (1431)
T ss_pred             CccccceeEEEecCCceEEEEecCCceEEEEEeecCce
Confidence             2347899999999999999997  8899999986543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=5.2e-11  Score=90.20  Aligned_cols=195  Identities=15%  Similarity=0.274  Sum_probs=132.5

Q ss_pred             cccceeEEEeecCC--CeeEE-----EeccceEEEEecCcceeee-----eeeccCCceEEEcCCCCE-EEEEe--cC--
Q 026679           13 HKERVISLCMSPVN--DSFMS-----GSLDHSVRIWDLRVNACQG-----ILRLRGRPTVAFDQQGLV-FAVAM--EA--   75 (235)
Q Consensus        13 h~~~v~~~~~~~~~--~~l~s-----~~~d~~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~-l~~~~--~d--   75 (235)
                      |...|+.+.+||.+  ..+|+     .+.-+.|+||.........     .+-......+.|++-|.- |+..+  -|  
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt  243 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT  243 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence            66788999999864  33443     3556689999876332221     122222233788886653 33222  22  


Q ss_pred             -------CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEE--ecCCCcEEEEEcCCCceeeeeccCCCCCc
Q 026679           76 -------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL--TTTNNNIYVLDAYGGEKRCGFSLEPSPNT  146 (235)
Q Consensus        76 -------g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  146 (235)
                             .++++.++.....    ... ....++|.++.|+|+++.+++  |-.-..+.+||++. ..+..  +..  ++
T Consensus       244 n~SYYGEq~Lyll~t~g~s~----~V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~d--f~e--gp  313 (566)
T KOG2315|consen  244 NASYYGEQTLYLLATQGESV----SVP-LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFD--FPE--GP  313 (566)
T ss_pred             CccccccceEEEEEecCceE----EEe-cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEe--CCC--CC
Confidence                   3677777763221    222 234689999999999987765  44577899999864 44433  222  44


Q ss_pred             ceeeEEeCCCcEEEEeCC---CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--------cceEEeeCCC
Q 026679          147 NTEATFTPDGQYVVSGSG---DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--------SVLSFWIPNP  215 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~~i~iw~~~~  215 (235)
                      -+++-|+|.|++|+.++-   .|.|-|||+.+.+++..+.....  +-..|+|||++++++.        +.++||++.+
T Consensus       314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            677999999999987654   58899999999988888875543  5579999999999986        5599999988


Q ss_pred             CCCC
Q 026679          216 SSNS  219 (235)
Q Consensus       216 ~~~~  219 (235)
                      ..+.
T Consensus       392 ~~l~  395 (566)
T KOG2315|consen  392 SLLH  395 (566)
T ss_pred             ceee
Confidence            6543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=5.7e-13  Score=95.19  Aligned_cols=167  Identities=10%  Similarity=0.071  Sum_probs=126.0

Q ss_pred             EEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEc
Q 026679           30 MSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS  109 (235)
Q Consensus        30 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  109 (235)
                      ++.+.+..|-+-|++++..........+-...|...++++..|+.+|.|..+|++.............-|.+.|+++..-
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L  307 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL  307 (425)
T ss_pred             ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence            45556677888888877554444333344477888899999999999999999998755444444555688999999877


Q ss_pred             c-CCCeEEEecCCCcEEEEEcCCCce---eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC
Q 026679          110 N-DGKSMLLTTTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN  185 (235)
Q Consensus       110 ~-~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  185 (235)
                      . ++.+|.+.+.+|.|++||++.-+.   +..+..|.....-.-+...+....+++++.|...++|.++.+..+.+++-.
T Consensus       308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            6 788899999999999999997666   666776655544445666778888999999999999999999998887633


Q ss_pred             C----cceeEEEeec
Q 026679          186 I----GVVACLKWAP  196 (235)
Q Consensus       186 ~----~~v~~~~~~~  196 (235)
                      .    ..+.+++|..
T Consensus       388 ~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  388 YSASEVDIPSVAFDS  402 (425)
T ss_pred             Cccccccccceehhc
Confidence            2    2455666643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.45  E-value=6.7e-12  Score=95.32  Aligned_cols=158  Identities=13%  Similarity=0.116  Sum_probs=126.9

Q ss_pred             CCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEc------c--------------CCCeEEEecCCCc
Q 026679           64 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS------N--------------DGKSMLLTTTNNN  123 (235)
Q Consensus        64 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~------~--------------~~~~l~~~~~d~~  123 (235)
                      |...++|....||.+++||....+...... ....-.+...+..|.      |              +-..++-|...|.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~-p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFA-PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeec-cchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            456789999999999999998765411110 011111223333331      1              2236777888999


Q ss_pred             EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEE
Q 026679          124 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA  203 (235)
Q Consensus       124 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  203 (235)
                      |.+|++..++....+....|.+.+.++.++.+-..|.+++.|+.+..|+....+.+..++.....+.+++.+||+..+++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            99999999999999998899999999999999999999999999999999999999999988889999999999999999


Q ss_pred             cccceEEeeCCCCCCCCCC
Q 026679          204 ASSVLSFWIPNPSSNSTDE  222 (235)
Q Consensus       204 ~~~~i~iw~~~~~~~~~~~  222 (235)
                      +++.|++|++++.+.....
T Consensus       162 as~~ik~~~~~~kevv~~f  180 (541)
T KOG4547|consen  162 ASRQIKVLDIETKEVVITF  180 (541)
T ss_pred             ccceEEEEEccCceEEEEe
Confidence            9999999999987765443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.44  E-value=9.7e-12  Score=87.11  Aligned_cols=191  Identities=12%  Similarity=0.114  Sum_probs=134.5

Q ss_pred             eeEEEeecCCCeeEEEeccceEEEEecCcceeee--eeeccCCce--EEEcC-CCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679           17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG--ILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~   91 (235)
                      -.++.|++.+..++++-.+|.+.+-+........  ..+.|...+  ..|+. +.+++.+|+.|+.+..||++.+..  .
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~--~  201 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT--F  201 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc--e
Confidence            3567888888889999999999866655554443  677777665  56654 557899999999999999994432  1


Q ss_pred             eeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCC-CceeeeeccCCCCCcceeeEEeCC--CcEEEEeCCCCc
Q 026679           92 DTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPD--GQYVVSGSGDGT  167 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~  167 (235)
                      .-.....|...|.++.-+| .+.++++|+.|-.|++||.|+ ++++..-...   +.|..+..+|.  ++.|+++-.+| 
T Consensus       202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~---GGVWRi~~~p~~~~~lL~~CMh~G-  277 (339)
T KOG0280|consen  202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG---GGVWRIKHHPEIFHRLLAACMHNG-  277 (339)
T ss_pred             eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc---cceEEEEecchhhhHHHHHHHhcC-
Confidence            1222456788899998876 678999999999999999994 5555433322   66899999994  34555555555 


Q ss_pred             EEEEEcCCCc-----eeeeecCCCcceeEEEeecCCCEEEEcc---cceE-EeeC
Q 026679          168 LHAWNINTRN-----EVACWNGNIGVVACLKWAPRRAMFVAAS---SVLS-FWIP  213 (235)
Q Consensus       168 i~v~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~-iw~~  213 (235)
                      .+|-+...+.     .....+.|.+-.+.-.|.....++++++   +.++ +|-.
T Consensus       278 ~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~  332 (339)
T KOG0280|consen  278 AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH  332 (339)
T ss_pred             ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence            5677765432     2334466777777778866667788877   3333 6654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=5e-13  Score=101.41  Aligned_cols=201  Identities=18%  Similarity=0.311  Sum_probs=137.8

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCc-------ceeeeeeeccCCce--EEEcCCCCEEEEEecCCe
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-------NACQGILRLRGRPT--VAFDQQGLVFAVAMEAGA   77 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-------~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~   77 (235)
                      +..+.||+..|..++--.+.+-+++++.|++|++|.++.       ..+..+++.|..++  +.|-.+.+.++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            456789999999998877788899999999999999863       23666677776555  7777777776654  789


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEcc--CCCeEEEe-cCCCcEEEEEcCCCceeeeeccC---CCCCcceeeE
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLE---PSPNTNTEAT  151 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~---~~~~~i~~~~  151 (235)
                      +.+||.--+.....  .......+.+..+..-|  +...++++ +...+|+++|.+..+....++..   .....+++++
T Consensus       806 iHlWDPFigr~Laq--~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQ--MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             ceeecccccchhHh--hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            99999765443111  11111122333333333  34444454 56889999999998877766543   2235588999


Q ss_pred             EeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEE-ee
Q 026679          152 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSF-WI  212 (235)
Q Consensus       152 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~i-w~  212 (235)
                      ..|.|++++++-.+|.|.+.|.++|+.+..+.........++ .|..+.++...  .++.+ |.
T Consensus       884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWh  946 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWH  946 (1034)
T ss_pred             eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeeh
Confidence            999999999999999999999999998887765544444443 23334444333  33444 54

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.43  E-value=2.7e-11  Score=86.75  Aligned_cols=201  Identities=13%  Similarity=0.241  Sum_probs=135.3

Q ss_pred             cceeEEEeecCC--CeeEEEeccceEEEEecCcceeee--------------------eee----------------ccC
Q 026679           15 ERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVNACQG--------------------ILR----------------LRG   56 (235)
Q Consensus        15 ~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~~--------------------~~~----------------~~~   56 (235)
                      .+|..+.|.+++  ..++....|.+|++|.+.......                    .+.                .|.
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            578889999876  457778899999999875321111                    010                011


Q ss_pred             --CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCC-----CcceeEEEEcc-CCCeEEEecCCCcEEEEE
Q 026679           57 --RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-----TAEVCDIKFSN-DGKSMLLTTTNNNIYVLD  128 (235)
Q Consensus        57 --~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d  128 (235)
                        .+++.++.|.+.++++ .|-.|.+|+++-... .........+     ..-|++..|+| ..+.++..+..|+|++-|
T Consensus       165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~-sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQ-SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             eEeeeeeecCccceEeec-cceeeeeccccccCC-ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence              2236777788877776 456899999875442 2222223332     35688899999 467788889999999999


Q ss_pred             cCCCcee----eeeccCCC----------CCcceeeEEeCCCcEEEEeCCCCcEEEEEc-CCCceeeeecCCCc------
Q 026679          129 AYGGEKR----CGFSLEPS----------PNTNTEATFTPDGQYVVSGSGDGTLHAWNI-NTRNEVACWNGNIG------  187 (235)
Q Consensus       129 ~~~~~~~----~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~------  187 (235)
                      +|.....    +.+.....          -..|..+.|+++|+|+++-..- +|++||+ ...+++.+++.|..      
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc  321 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLC  321 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHH
Confidence            9843211    11111111          1567889999999999987644 7999999 46677777766621      


Q ss_pred             ------c---eeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          188 ------V---VACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       188 ------~---v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                            .   =..++|+.++.++++|+  +.+++++...+..
T Consensus       322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence                  1   24578999999999999  6699999655443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=2.2e-12  Score=97.50  Aligned_cols=122  Identities=19%  Similarity=0.335  Sum_probs=103.4

Q ss_pred             EeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC--CCcEEEEeCCCCcEEEE
Q 026679           94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP--DGQYVVSGSGDGTLHAW  171 (235)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~v~  171 (235)
                      ..+.+|.+-|.++.|+.+|.+|++|++|-.+.+||.-..+.+..+. .+|...|.++.|-|  +.+.+++|..|..|+++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            4567899999999999999999999999999999998887777665 46778899999999  56788999999999999


Q ss_pred             EcCC----------CceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCC
Q 026679          172 NINT----------RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       172 d~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~  216 (235)
                      |+..          .+....+..|...|..|+-.|++ ..+.+++  |+++-||+...
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            9974          23445567788999999999998 5666666  89999999764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.41  E-value=1.1e-11  Score=90.07  Aligned_cols=162  Identities=20%  Similarity=0.227  Sum_probs=114.3

Q ss_pred             eeEEEeecCCCeeEEEeccceEEEEecCccee----eeeeeccCCc-eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679           17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC----QGILRLRGRP-TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~   91 (235)
                      ...+..++.++++|.+..+....++++.....    .......... .+.+..+......+..-|.++-+|+-....  .
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--G  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--c
Confidence            34456677888999888888877777654432    2233333322 266666666666665555555555443221  1


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW  171 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  171 (235)
                      .....-+|-+.++.++|+||+++++++..|..|++-....-..+..+-+ +|...|..++.-++ ..|++++.|+++++|
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-GH~eFVS~isl~~~-~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-GHKEFVSTISLTDN-YLLLSGSGDKTLRLW  220 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-ccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence            1334558889999999999999999999999999988776666655543 46677888988765 458999999999999


Q ss_pred             EcCCCceeeee
Q 026679          172 NINTRNEVACW  182 (235)
Q Consensus       172 d~~~~~~~~~~  182 (235)
                      |+.+|+.+.++
T Consensus       221 d~~sgk~L~t~  231 (390)
T KOG3914|consen  221 DITSGKLLDTC  231 (390)
T ss_pred             ecccCCccccc
Confidence            99999887664

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.40  E-value=7.6e-11  Score=82.73  Aligned_cols=199  Identities=11%  Similarity=0.043  Sum_probs=134.7

Q ss_pred             cceeEEEeec---CCC-eeEEEeccceEEEEecCcceeeeeeeccC--------CceEEEcCCCCEEEEEecCCeEEEEe
Q 026679           15 ERVISLCMSP---VND-SFMSGSLDHSVRIWDLRVNACQGILRLRG--------RPTVAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus        15 ~~v~~~~~~~---~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      ..+..+.|.-   +|. .++-+..+|.|.++..........+..-.        ..++.|++.+..++++..+|.+.+-+
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~  149 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY  149 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence            4566666653   344 45666778888888765443333332211        12378889999999999999998555


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeC-CCcEE
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTP-DGQYV  159 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l  159 (235)
                      ......  ......+.|.....-..|+. +.+.+.+|++|+.+..||+|..+ .+. .....|...|.++.-+| .+.++
T Consensus       150 ~t~~~l--e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~-~n~kvH~~GV~SI~ss~~~~~~I  226 (339)
T KOG0280|consen  150 ETEMVL--EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW-HNSKVHTSGVVSIYSSPPKPTYI  226 (339)
T ss_pred             cceeee--eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee-ecceeeecceEEEecCCCCCceE
Confidence            443322  11235677888888888876 45788999999999999999433 222 12344556688887776 67899


Q ss_pred             EEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecCCC--EEEEcc-cceEEeeCCCCC
Q 026679          160 VSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRA--MFVAAS-SVLSFWIPNPSS  217 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~-~~i~iw~~~~~~  217 (235)
                      ++|+.|-.|++||.++ ++++..-+ -.+.|+.+.++|.-.  .|+++- +..+|-+.+...
T Consensus       227 ~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~  287 (339)
T KOG0280|consen  227 ATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV  287 (339)
T ss_pred             EEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence            9999999999999994 66665544 347899999999533  333332 556776665443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=1.4e-10  Score=88.09  Aligned_cols=202  Identities=15%  Similarity=0.247  Sum_probs=128.0

Q ss_pred             cceeEEEeecCCCeeEEEecc-----------ceEEEEecCcceeeeeeeccC-----CceEEEcCCCCEEEEEecCCeE
Q 026679           15 ERVISLCMSPVNDSFMSGSLD-----------HSVRIWDLRVNACQGILRLRG-----RPTVAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~dg~v   78 (235)
                      ..|.-+.|||+.++|+|-+..           ..++|||+.+|...+.+....     -+...||.|++++|.-..+ .|
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-si  328 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SI  328 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eE
Confidence            358889999999999987641           579999999998888877632     1237788888877766553 45


Q ss_pred             EEEeccCCC-----------------------------------------------------------------------
Q 026679           79 KLFDSRSYD-----------------------------------------------------------------------   87 (235)
Q Consensus        79 ~i~d~~~~~-----------------------------------------------------------------------   87 (235)
                      .||+.....                                                                       
T Consensus       329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL  408 (698)
T KOG2314|consen  329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL  408 (698)
T ss_pred             EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence            555433200                                                                       


Q ss_pred             ---------C---CC---ceeEeec---------CCCcceeEEEEccCCCeEEEecC---CCcEEEEEcCCCceeeeecc
Q 026679           88 ---------K---GP---FDTFLVG---------GDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSL  140 (235)
Q Consensus        88 ---------~---~~---~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~  140 (235)
                               .   ..   ...+.+.         .-...|..++|-|.|+.+++-+.   ..++.+|-+.+......+..
T Consensus       409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk  488 (698)
T KOG2314|consen  409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK  488 (698)
T ss_pred             EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence                     0   00   0000000         11245667888888888776554   45688887763211111111


Q ss_pred             CCCCCcceeeEEeCCCcEEEEe---CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--------cceE
Q 026679          141 EPSPNTNTEATFTPDGQYVVSG---SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--------SVLS  209 (235)
Q Consensus       141 ~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~~i~  209 (235)
                      .-.....+.+.|+|.|++++.+   +..|.+.++|.........-.......+.+.|.|.|+|+++++        ..-+
T Consensus       489 ~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYr  568 (698)
T KOG2314|consen  489 ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYR  568 (698)
T ss_pred             hhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceE
Confidence            1112346789999999998765   4578899999874232222111224568899999999999987        2378


Q ss_pred             EeeCCCCC
Q 026679          210 FWIPNPSS  217 (235)
Q Consensus       210 iw~~~~~~  217 (235)
                      +|++.+..
T Consensus       569 i~tfqGrl  576 (698)
T KOG2314|consen  569 IFTFQGRL  576 (698)
T ss_pred             EEEeecHH
Confidence            88887754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.39  E-value=9.6e-10  Score=93.61  Aligned_cols=202  Identities=17%  Similarity=0.162  Sum_probs=129.9

Q ss_pred             ceeEEEeecCCCeeEEEe-ccceEEEEecCcceeeeeeecc------------------CCc-eEEEcC-CCCEEEEEec
Q 026679           16 RVISLCMSPVNDSFMSGS-LDHSVRIWDLRVNACQGILRLR------------------GRP-TVAFDQ-QGLVFAVAME   74 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~------------------~~~-~~~~~~-~~~~l~~~~~   74 (235)
                      .-..+++.++++.|+.+. ..+.|+++|..++.. .++...                  ..+ .++++| ++.++++...
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            357889998887665554 456799999876543 222110                  112 389999 5666677777


Q ss_pred             CCeEEEEeccCCCCCCc----eeEeec------CCCcceeEEEEccCCCeEE-EecCCCcEEEEEcCCCceeeeec----
Q 026679           75 AGAIKLFDSRSYDKGPF----DTFLVG------GDTAEVCDIKFSNDGKSML-LTTTNNNIYVLDAYGGEKRCGFS----  139 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~----~~~~~~------~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~----  139 (235)
                      ++.|++||..++.....    ......      ..-.....++++|+++.|+ +-..++.|++||+.++.......    
T Consensus       704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~  783 (1057)
T PLN02919        704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT  783 (1057)
T ss_pred             CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence            89999999866432000    000000      0112456799999998554 45567899999998765321110    


Q ss_pred             -------cCC--------CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-------------CCCcceeE
Q 026679          140 -------LEP--------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-------------GNIGVVAC  191 (235)
Q Consensus       140 -------~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------------~~~~~v~~  191 (235)
                             ...        .-.....++++++|+.+++-..++.|++||..++.......             +.-.....
T Consensus       784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G  863 (1057)
T PLN02919        784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG  863 (1057)
T ss_pred             cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence                   000        01124678999999988888999999999997765542221             11235788


Q ss_pred             EEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          192 LKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       192 ~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      ++++++|+++++.+  +.|++|++++...
T Consensus       864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        864 LALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            99999998777665  6699999987654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.38  E-value=8.2e-11  Score=84.28  Aligned_cols=166  Identities=16%  Similarity=0.262  Sum_probs=121.7

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEec
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      ...+.+..|...|..+-|+...+++++.+.|..+.---.+.+..+..+....... +.+.-.  +...|...|.+..-.+
T Consensus       105 ~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~  182 (404)
T KOG1409|consen  105 TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKL  182 (404)
T ss_pred             chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEE
Confidence            3566777899999999999888999999999876433334444443333222111 112111  5667777787777666


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                      .....  .....+.+|...+.+++|.|....|+++..|..+.+||+...+.. .+.+..|...+..+..-+--+.+.+++
T Consensus       183 ~~~~~--~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~gh~~kV~~l~~~~~t~~l~S~~  259 (404)
T KOG1409|consen  183 EQNGC--QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQGHNDKVQALSYAQHTRQLISCG  259 (404)
T ss_pred             eecCC--ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeeccchhhhhhhhhhhhheeeeecc
Confidence            54433  235667899999999999999999999999999999999655443 345566667788888888888999999


Q ss_pred             CCCcEEEEEcCC
Q 026679          164 GDGTLHAWNINT  175 (235)
Q Consensus       164 ~dg~i~v~d~~~  175 (235)
                      +||.|.+|+.+.
T Consensus       260 edg~i~~w~mn~  271 (404)
T KOG1409|consen  260 EDGGIVVWNMNV  271 (404)
T ss_pred             CCCeEEEEeccc
Confidence            999999999864

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.38  E-value=2.6e-10  Score=85.27  Aligned_cols=172  Identities=12%  Similarity=0.120  Sum_probs=130.1

Q ss_pred             CCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCC-eEEEEeccCCCCCCceeEeecCCCcce
Q 026679           25 VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAG-AIKLFDSRSYDKGPFDTFLVGGDTAEV  103 (235)
Q Consensus        25 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~v  103 (235)
                      +|.+++..|. |...+.+...+..++.-+...+.-..+..+++-++.|..|| .+-++|.++++.     ......-+.|
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-----kr~e~~lg~I  404 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-----KRIEKDLGNI  404 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-----EEeeCCccce
Confidence            5778888876 67778777666655554444444466667777899999999 899999988763     3444556789


Q ss_pred             eEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC----cEEEEEcCCCcee
Q 026679          104 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG----TLHAWNINTRNEV  179 (235)
Q Consensus       104 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~  179 (235)
                      .++..+|+|++++++.....+.++|+.+++....-  ....+-|+.+.|+|+++++|-+--+|    .|++||+.+++..
T Consensus       405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~id--kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID--KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec--ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence            99999999999999999999999999999865432  23346799999999999999887665    4999999877765


Q ss_pred             eeecCCCcceeEEEeecCCCEEEEcc
Q 026679          180 ACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       180 ~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      ..-. ..+.=.+-+|.|++++|.--+
T Consensus       483 ~vTT-~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         483 DVTT-PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EecC-CcccccCcccCCCCcEEEEEe
Confidence            4332 334445678899999886554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=4.6e-10  Score=81.04  Aligned_cols=180  Identities=13%  Similarity=0.209  Sum_probs=119.7

Q ss_pred             cceEEEEecCcce----eeeeeeccCCc-eEEEcCCCCEEEEEecC---CeEEEEeccCC--CCCCceeEeecCCCccee
Q 026679           35 DHSVRIWDLRVNA----CQGILRLRGRP-TVAFDQQGLVFAVAMEA---GAIKLFDSRSY--DKGPFDTFLVGGDTAEVC  104 (235)
Q Consensus        35 d~~i~vwd~~~~~----~~~~~~~~~~~-~~~~~~~~~~l~~~~~d---g~v~i~d~~~~--~~~~~~~~~~~~~~~~v~  104 (235)
                      ++-|++|++.+..    ..........+ -++++|+++.|.++..+   |.|..|.+...  ..........  ...+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~--~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL--PGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc--CCCCCe
Confidence            4669999987432    22222233333 39999999999888654   77888777653  2211111111  123347


Q ss_pred             EEEEccCCCeEEEecC-CCcEEEEEcCC-CceeeeeccCCCCCc----------ceeeEEeCCCcEEEEeCC-CCcEEEE
Q 026679          105 DIKFSNDGKSMLLTTT-NNNIYVLDAYG-GEKRCGFSLEPSPNT----------NTEATFTPDGQYVVSGSG-DGTLHAW  171 (235)
Q Consensus       105 ~~~~~~~~~~l~~~~~-d~~i~~~d~~~-~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg~i~v~  171 (235)
                      .++++++|++++++.. .|.|.++-++. |..........|.+.          +....+.|++++|++... --.|.+|
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            8999999999888765 68899999865 333222122222222          677899999999988753 2369999


Q ss_pred             EcCCCceeeeec---CCCcceeEEEeecCCCEEEEcc---cceEEeeCCCC
Q 026679          172 NINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS  216 (235)
Q Consensus       172 d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~  216 (235)
                      ++..++....-.   ......+.|.|+|++++.....   ++|.+|.++..
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            998776532221   2345678999999999988886   88999999774

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=3.2e-11  Score=95.01  Aligned_cols=183  Identities=10%  Similarity=0.093  Sum_probs=135.6

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF   94 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~   94 (235)
                      ..++|++++  +++|+-|..+|.|++.+.... . .....+...    ..+|+++++|+.||.|.+..+-+.+.     .
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~-----~  106 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDE-----I  106 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCcc-----c
Confidence            466777777  689999999999999987433 2 222222111    56899999999999999998877664     1


Q ss_pred             eecCCCcceeEEEEccC-----CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679           95 LVGGDTAEVCDIKFSND-----GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH  169 (235)
Q Consensus        95 ~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  169 (235)
                      .......++.+++++|+     .+.+++|+..| +.++.-+--+......++...++|.++.|  .|+++|.++.+| |+
T Consensus       107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~  182 (846)
T KOG2066|consen  107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VK  182 (846)
T ss_pred             eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cE
Confidence            22233468999999997     56799999988 88876432222222345667788999999  677999999888 89


Q ss_pred             EEEcCCCceeeeecCCCc------ceeEEEeecCCCEEEEcccceEEeeCC
Q 026679          170 AWNINTRNEVACWNGNIG------VVACLKWAPRRAMFVAASSVLSFWIPN  214 (235)
Q Consensus       170 v~d~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~~~i~iw~~~  214 (235)
                      |||+.+++.+..++....      ....+.|.++.++++.-+.+|+|..++
T Consensus       183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK  233 (846)
T ss_pred             EEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence            999998888776653322      345788998888888888889999887

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.36  E-value=9.1e-10  Score=82.44  Aligned_cols=142  Identities=16%  Similarity=0.178  Sum_probs=106.4

Q ss_pred             ccccceeEEEeecCCCeeEEEeccc-eEEEEecCcceeeeeeecc-CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDH-SVRIWDLRVNACQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      +|.+.|.-..+..+++-++.|..|| .+-|+|.++++.......- .+..+..+++|+.++++.....+.+.|+.++.. 
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv-  435 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-  435 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-
Confidence            4667788888887888899999999 8999999888755544333 344599999999999999999999999999875 


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecCCC----cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN----NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                         ...-....+-|+.+.|+|+++++|.+--+|    .|+++|+..++.........+.   .+-+|.|++++|.
T Consensus       436 ---~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~D---fsPaFD~d~ryLY  504 (668)
T COG4946         436 ---RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYD---FSPAFDPDGRYLY  504 (668)
T ss_pred             ---eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccc---cCcccCCCCcEEE
Confidence               333344557799999999999999887655    5999999887765544333322   2345666666543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.36  E-value=1.8e-11  Score=98.59  Aligned_cols=147  Identities=16%  Similarity=0.145  Sum_probs=119.0

Q ss_pred             eecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCC
Q 026679           22 MSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD   99 (235)
Q Consensus        22 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~   99 (235)
                      ++++.-++++|+.-+.|.+|+....+....+.+|...+  +.++.+|.++++.+.|.++++|++.+.+...   ....+|
T Consensus       141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgH  217 (967)
T KOG0974|consen  141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGH  217 (967)
T ss_pred             ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccc
Confidence            34555678999999999999987444444577887766  7788899999999999999999999877533   345689


Q ss_pred             CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679          100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT  175 (235)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  175 (235)
                      ...+..+.|.|+  .+++++.|-+.++|+... .....+..+.. ..+..++..++...+++++.|+.+++||+..
T Consensus       218 saRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  218 SARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             cceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            999999999998  899999999999997644 44444444432 4588899999999999999999999999854

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.35  E-value=4.1e-10  Score=78.27  Aligned_cols=192  Identities=5%  Similarity=-0.077  Sum_probs=133.0

Q ss_pred             eeEEEeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeE
Q 026679           28 SFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD  105 (235)
Q Consensus        28 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~  105 (235)
                      .+..++.|.++++.+++.+..........  ...++++++++++++.+....|..|.+........ ..........-.+
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~-~~~~a~t~D~gF~  208 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE-NIYEAPTSDHGFY  208 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee-eeEecccCCCcee
Confidence            36667888889998887665444444443  45599999999999999999999999987553222 2233344445567


Q ss_pred             EEEccCCCeEEEecCCCcEEEEEcCCCceeeee---ccCCCCCcceeeEEeCCCc--EEEEeCCCCcEEEEEcCCCceee
Q 026679          106 IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF---SLEPSPNTNTEATFTPDGQ--YVVSGSGDGTLHAWNINTRNEVA  180 (235)
Q Consensus       106 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~v~d~~~~~~~~  180 (235)
                      ..|+.....+|++..||++.+||++........   ..+.|.+.++.+.|++.|.  +|+..-.-+.+.+.|+++++...
T Consensus       209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence            889999999999999999999999875433221   2234778999999998654  45555556789999999987654


Q ss_pred             eecC-------CC-cceeEEEeecCCCEEEEcc-cceEEeeCCCCCCCC
Q 026679          181 CWNG-------NI-GVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNST  220 (235)
Q Consensus       181 ~~~~-------~~-~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~~~  220 (235)
                      .+..       |. ..|..-.|+.++.-+.+.. -.+.=|++.......
T Consensus       289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~srsR~~  337 (344)
T KOG4532|consen  289 VIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSRSRFS  337 (344)
T ss_pred             EEecCccccccccccccccccccCCCcccccccchhhheeeccccceec
Confidence            4421       22 3377777877776666655 335556555444333

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.35  E-value=6.9e-10  Score=77.20  Aligned_cols=195  Identities=9%  Similarity=0.068  Sum_probs=128.7

Q ss_pred             EEEeecC-----CCeeEEEeccceEEEEecCcceeeeee-eccCC--ceE-EEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           19 SLCMSPV-----NDSFMSGSLDHSVRIWDLRVNACQGIL-RLRGR--PTV-AFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        19 ~~~~~~~-----~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~--~~~-~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      .+.|-|.     ..+||.|+..|...+|...+.+....+ ..+..  ..+ ...-..-.+..++.|.++++.++......
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~  151 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK  151 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence            4556552     347899999999999998866533222 22221  110 11112234677788888998888765432


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL  168 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  168 (235)
                      .    ......-.+.++++++|++++++.+....|..|.+.... .+...........-.+..|+.....+|++..||++
T Consensus       152 ~----~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~  227 (344)
T KOG4532|consen  152 F----AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTC  227 (344)
T ss_pred             c----eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcE
Confidence            1    111111237889999999999999999999999886543 22222222222334668899999999999999999


Q ss_pred             EEEEcCCCceee-----eecCCCcceeEEEeecCCC---EEEEcc-cceEEeeCCCCC
Q 026679          169 HAWNINTRNEVA-----CWNGNIGVVACLKWAPRRA---MFVAAS-SVLSFWIPNPSS  217 (235)
Q Consensus       169 ~v~d~~~~~~~~-----~~~~~~~~v~~~~~~~~~~---~l~~~~-~~i~iw~~~~~~  217 (235)
                      .|||++......     +-..|.+.+..+.|++.|.   ++++-. +-+.+-|++...
T Consensus       228 ~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  228 AIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             EEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            999998754332     2245889999999998553   334444 678888887654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.34  E-value=3.1e-09  Score=76.70  Aligned_cols=198  Identities=11%  Similarity=0.102  Sum_probs=140.0

Q ss_pred             eeEEEeecC-CCeeEEEeccce-EEEEecCcceeeeeeeccCCce----EEEcCCCCEEEEEec-----CCeEEEEeccC
Q 026679           17 VISLCMSPV-NDSFMSGSLDHS-VRIWDLRVNACQGILRLRGRPT----VAFDQQGLVFAVAME-----AGAIKLFDSRS   85 (235)
Q Consensus        17 v~~~~~~~~-~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~-----dg~v~i~d~~~   85 (235)
                      ...++.+|+ ...++.+-.-|+ ..+||..+++....+......-    .+|+++|++|++.-.     .|.|-+||...
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            346788884 456667766654 6789999999988887766544    789999999998754     58999999983


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEec------------------CCCcEEEEEcCCCceeeeecc--CCCCC
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT------------------TNNNIYVLDAYGGEKRCGFSL--EPSPN  145 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~d~~i~~~d~~~~~~~~~~~~--~~~~~  145 (235)
                      .-   ...-.+..+.-....+.+.|||+.|+++-                  .+.++.+.|..+++.+....+  ..+..
T Consensus        87 ~~---~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l  163 (305)
T PF07433_consen   87 GY---RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL  163 (305)
T ss_pred             Cc---EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence            21   12333444444556788999998777752                  134578888899998888776  44667


Q ss_pred             cceeeEEeCCCcEEEEeCCCCc-------EEEEEcCCCceeeeec-------CCCcceeEEEeecCCCEEEEcc---cce
Q 026679          146 TNTEATFTPDGQYVVSGSGDGT-------LHAWNINTRNEVACWN-------GNIGVVACLKWAPRRAMFVAAS---SVL  208 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~dg~-------i~v~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~---~~i  208 (235)
                      .+..+++.++|..++..-..|.       +.+++.  ++.+..+.       .-.+.+-+|++++++.++++++   +.+
T Consensus       164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence            7999999999987766543332       344443  33222222       2346789999999999998887   779


Q ss_pred             EEeeCCCCCCC
Q 026679          209 SFWIPNPSSNS  219 (235)
Q Consensus       209 ~iw~~~~~~~~  219 (235)
                      .+||..++...
T Consensus       242 ~~~d~~tg~~~  252 (305)
T PF07433_consen  242 AVWDAATGRLL  252 (305)
T ss_pred             EEEECCCCCEe
Confidence            99998876544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.33  E-value=8.1e-09  Score=72.64  Aligned_cols=200  Identities=16%  Similarity=0.233  Sum_probs=126.5

Q ss_pred             EEeecCCCeeEEEeccceEEEEecCcc--eeeeeeeccCC-----ceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCc-
Q 026679           20 LCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGR-----PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF-   91 (235)
Q Consensus        20 ~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-   91 (235)
                      ++.+.+|+.||.. .|..|.|-..++.  ..+...+.+..     .-++|+||+.+||.+...|+|++||+.....-.. 
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~   81 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP   81 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence            5667788877765 4667777655442  23333333332     2399999999999999999999999875332100 


Q ss_pred             -eeEeecCCCcceeEEEEccC------CCeEEEecCCCcEEEEEcCC-----CceeeeeccCCC-CCcceeeEEeCCCcE
Q 026679           92 -DTFLVGGDTAEVCDIKFSND------GKSMLLTTTNNNIYVLDAYG-----GEKRCGFSLEPS-PNTNTEATFTPDGQY  158 (235)
Q Consensus        92 -~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~-~~~i~~~~~~~~~~~  158 (235)
                       .......-...|..+.|.+.      ...|++-..+|.++-|-+..     .+....+.+..+ +..|.++.++|..++
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L  161 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL  161 (282)
T ss_pred             cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence             00011122345667777542      22467777788887777632     223344444333 467999999999888


Q ss_pred             EEEeCC----CC-------cEEEEEcCCCceee-----------------------e---e---cCCCcceeEEEeecCC
Q 026679          159 VVSGSG----DG-------TLHAWNINTRNEVA-----------------------C---W---NGNIGVVACLKWAPRR  198 (235)
Q Consensus       159 l~~~~~----dg-------~i~v~d~~~~~~~~-----------------------~---~---~~~~~~v~~~~~~~~~  198 (235)
                      |++|+.    ++       -+..|.+-++.+-.                       .   +   ......|..|..+|||
T Consensus       162 LlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg  241 (282)
T PF15492_consen  162 LLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG  241 (282)
T ss_pred             EEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC
Confidence            887753    11       25667654432100                       0   0   0124578899999999


Q ss_pred             CEEEEcc--cceEEeeCCCCCCCC
Q 026679          199 AMFVAAS--SVLSFWIPNPSSNST  220 (235)
Q Consensus       199 ~~l~~~~--~~i~iw~~~~~~~~~  220 (235)
                      ..|++..  |.+.+|++..-.+..
T Consensus       242 ~~La~ih~sG~lsLW~iPsL~~~~  265 (282)
T PF15492_consen  242 SLLACIHFSGSLSLWEIPSLRLQR  265 (282)
T ss_pred             CEEEEEEcCCeEEEEecCcchhhc
Confidence            9999997  999999997755443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.31  E-value=1.3e-10  Score=84.67  Aligned_cols=155  Identities=17%  Similarity=0.253  Sum_probs=107.1

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEc---CCCceee
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA---YGGEKRC  136 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~---~~~~~~~  136 (235)
                      ...++.+++++++..+....+++...... .........-...-+.+.|..+......+..-|.++-+|+   ..+... 
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-  145 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-  145 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-
Confidence            55678899999999998888888776543 1112222222333445555555555555555555444444   333332 


Q ss_pred             eeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee-cCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          137 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                        ..-+|-..++.++++||+++|+++..|..|++-....-..+..+ -||..-|..++.-++.. |++++  +++++||+
T Consensus       146 --~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  146 --PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDI  222 (390)
T ss_pred             --hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEec
Confidence              33456677999999999999999999999999888766666555 47999999999987655 56665  77999999


Q ss_pred             CCCCCC
Q 026679          214 NPSSNS  219 (235)
Q Consensus       214 ~~~~~~  219 (235)
                      ..++..
T Consensus       223 ~sgk~L  228 (390)
T KOG3914|consen  223 TSGKLL  228 (390)
T ss_pred             ccCCcc
Confidence            876543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.31  E-value=1.4e-10  Score=82.25  Aligned_cols=203  Identities=11%  Similarity=0.182  Sum_probs=135.7

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcce-----eeeeeeccC--------------CceEEEcCCC--CEEEEE
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-----CQGILRLRG--------------RPTVAFDQQG--LVFAVA   72 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~--------------~~~~~~~~~~--~~l~~~   72 (235)
                      ...|+++.|...|.+|++|...|.|.++.-+...     ....++.|.              +..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4579999999999999999999999999754322     112233332              1225555433  467888


Q ss_pred             ecCCeEEEEeccCCCC-----------------CCc----------------------eeEeecCCCcceeEEEEccCCC
Q 026679           73 MEAGAIKLFDSRSYDK-----------------GPF----------------------DTFLVGGDTAEVCDIKFSNDGK  113 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~-----------------~~~----------------------~~~~~~~~~~~v~~~~~~~~~~  113 (235)
                      +.|.+|++|.+.....                 ++.                      .......|...+.++.|..|.+
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            8999999998865310                 000                      0001124666788999998887


Q ss_pred             eEEEecCCCcEEEEEcCCCce-eeeeccCCCC-----CcceeeEEeCC-CcEEEEeCCCCcEEEEEcCCCce------ee
Q 026679          114 SMLLTTTNNNIYVLDAYGGEK-RCGFSLEPSP-----NTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNE------VA  180 (235)
Q Consensus       114 ~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~------~~  180 (235)
                      .+++ ..|=.|.+|++.-... .......++.     .-|++..|+|. ...+...+..|.|++-|++....      +.
T Consensus       186 t~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            6665 4577899998864321 2222223332     45788899995 45667778899999999984221      11


Q ss_pred             e----------ecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCCC
Q 026679          181 C----------WNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSS  217 (235)
Q Consensus       181 ~----------~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~  217 (235)
                      .          +..-...|..+.|+++|+++++-+ -+++|||.+..+
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k  312 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK  312 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence            1          112235788999999999999999 899999998654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=6.7e-11  Score=87.60  Aligned_cols=219  Identities=16%  Similarity=0.177  Sum_probs=159.5

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEec-cceEEEEecCcceeeeeeeccCCce-EEE--cCCC--CEEE-EEecCCe
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNACQGILRLRGRPT-VAF--DQQG--LVFA-VAMEAGA   77 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~-~~~--~~~~--~~l~-~~~~dg~   77 (235)
                      +.+..+..|-..|.+++.+-++.++.|.+. |..++++|+++-..+..++....+- +.|  ++..  ..++ +.-.+|.
T Consensus        44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~  123 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGK  123 (558)
T ss_pred             eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCC
Confidence            456778889999999999999999999777 9999999998877666665544333 333  3322  1333 3346899


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC------Cceeee-------eccCCCC
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG------GEKRCG-------FSLEPSP  144 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~------~~~~~~-------~~~~~~~  144 (235)
                      +.++|-.....+.  .....-|..+|.++.+.|.+..+++....|.|..|....      .+....       +......
T Consensus       124 i~VvD~~~d~~q~--~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K  201 (558)
T KOG0882|consen  124 IFVVDGFGDFCQD--GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK  201 (558)
T ss_pred             cEEECCcCCcCcc--ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence            9999987654322  344456889999999999999999999999999998763      111111       1122233


Q ss_pred             CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec--------------------------------CCC-cceeE
Q 026679          145 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--------------------------------GNI-GVVAC  191 (235)
Q Consensus       145 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------------------------------~~~-~~v~~  191 (235)
                      ....++.|+|+|..+.+-+.|..|++++.++++.+..+.                                .|. ..-+.
T Consensus       202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~  281 (558)
T KOG0882|consen  202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN  281 (558)
T ss_pred             cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence            567889999999999999999999999999887654431                                111 23466


Q ss_pred             EEeecCCCEEEEcc-cceEEeeCCCCCCCCCCCCC
Q 026679          192 LKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDESTD  225 (235)
Q Consensus       192 ~~~~~~~~~l~~~~-~~i~iw~~~~~~~~~~~~~~  225 (235)
                      +.|...+++|+-++ =.|++.++.+.....+...+
T Consensus       282 ~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~  316 (558)
T KOG0882|consen  282 AVFDESGNFLLYGTILGIKVINLDTNTVVRILGKD  316 (558)
T ss_pred             eEEcCCCCEEEeecceeEEEEEeecCeEEEEeccc
Confidence            78889999999998 56899998887766555443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.30  E-value=3.7e-12  Score=64.07  Aligned_cols=39  Identities=36%  Similarity=0.729  Sum_probs=36.9

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEe
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD   42 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   42 (235)
                      |++++.+++|.+.|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=2e-09  Score=81.89  Aligned_cols=166  Identities=17%  Similarity=0.251  Sum_probs=114.0

Q ss_pred             EEEeecCCC-eeE--EEecc---------ceEEEEecCcceeeeeee-ccCCceEEEcCCCCEEEEEe--cCCeEEEEec
Q 026679           19 SLCMSPVND-SFM--SGSLD---------HSVRIWDLRVNACQGILR-LRGRPTVAFDQQGLVFAVAM--EAGAIKLFDS   83 (235)
Q Consensus        19 ~~~~~~~~~-~l~--s~~~d---------~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--~dg~v~i~d~   83 (235)
                      .+.|++-|. +|+  +..-|         .++++.+++...+...+. ...+..+.|+|+++.|+++.  .-..+.+||+
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl  301 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL  301 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence            467877664 332  32223         357777776434433333 33455699999998877654  4668999998


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC---CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      +..-     .+.+  ..++-+++-|+|.|++++.++-   .|.|-+||+.+.+.+..+....    -+-+.|+|||++++
T Consensus       302 r~~~-----v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~PdGe~fl  370 (566)
T KOG2315|consen  302 RGKP-----VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSPDGEYFL  370 (566)
T ss_pred             CCCE-----eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcCCCcEEE
Confidence            7521     2322  3456678889999999988776   5889999999987776555432    45589999999999


Q ss_pred             EeCC------CCcEEEEEcCCCceeeeecCCCcceeEEEeecC
Q 026679          161 SGSG------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPR  197 (235)
Q Consensus       161 ~~~~------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  197 (235)
                      +++.      |+.++||+. +|..++...-. .....+.|-|.
T Consensus       371 TATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~-sEL~qv~W~P~  411 (566)
T KOG2315|consen  371 TATTAPRLRVDNGIKIWHY-TGSLLHEKMFK-SELLQVEWRPF  411 (566)
T ss_pred             EEeccccEEecCCeEEEEe-cCceeehhhhh-HhHhheeeeec
Confidence            8864      677999998 67766554322 25778888874

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=1.1e-08  Score=79.02  Aligned_cols=176  Identities=13%  Similarity=0.067  Sum_probs=106.9

Q ss_pred             ceEEEEecCcceeeeeeeccCCceEEEcCCCCE-EEEEec---CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC
Q 026679           36 HSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV-FAVAME---AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND  111 (235)
Q Consensus        36 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  111 (235)
                      ..|.+-|.+.................|+|+|+. ++..+.   ...|.++|+.+++.     ..+....+......|+||
T Consensus       169 ~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----~~lt~~~g~~~~~~~SPD  243 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----EKIASSQGMLVVSDVSKD  243 (419)
T ss_pred             ceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-----EEEecCCCcEEeeEECCC
Confidence            356665654333332333322223899999984 554443   35688889877653     222223445566789999


Q ss_pred             CCeEEEecC---CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CC--cEEEEEcCCCceeeeecCC
Q 026679          112 GKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGN  185 (235)
Q Consensus       112 ~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~  185 (235)
                      |+.++....   +..|+++|+.+++........   .......|+|||+.|+..+. .+  .|++.|+.+++....... 
T Consensus       244 G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~---~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-  319 (419)
T PRK04043        244 GSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYP---GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-  319 (419)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCcEEEcccCC---CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-
Confidence            987775433   456888998877654332222   22344689999998876653 23  588888877766333321 


Q ss_pred             CcceeEEEeecCCCEEEEcc--c---------ceEEeeCCCCCCCCCC
Q 026679          186 IGVVACLKWAPRRAMFVAAS--S---------VLSFWIPNPSSNSTDE  222 (235)
Q Consensus       186 ~~~v~~~~~~~~~~~l~~~~--~---------~i~iw~~~~~~~~~~~  222 (235)
                      ..  ....|+|+|++|+...  .         .+.+.+++++....+.
T Consensus       320 g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT  365 (419)
T PRK04043        320 GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT  365 (419)
T ss_pred             CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC
Confidence            11  2348999999988765  1         3667777666544433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.21  E-value=1.3e-08  Score=71.71  Aligned_cols=169  Identities=12%  Similarity=0.121  Sum_probs=110.8

Q ss_pred             eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC---------CceEEEcC---C---CCEEEEEecCCeEEEE
Q 026679           17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---------RPTVAFDQ---Q---GLVFAVAMEAGAIKLF   81 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------~~~~~~~~---~---~~~l~~~~~dg~v~i~   81 (235)
                      =.-++||||+.+||.+...|+|+++|+... .+..+....         +..+.|-+   +   ...|++-..+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            356899999999999999999999998643 333332211         11133432   1   2256677778888887


Q ss_pred             eccCCC---CCCceeEeecC-CCcceeEEEEccCCCeEEEecCC----C-------cEEEEEcCCCceeee---------
Q 026679           82 DSRSYD---KGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTN----N-------NIYVLDAYGGEKRCG---------  137 (235)
Q Consensus        82 d~~~~~---~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d----~-------~i~~~d~~~~~~~~~---------  137 (235)
                      -+..+.   -.....+.+.. ....|.++.++|..+.|++|+..    +       -+..|.+-++.+-..         
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~  204 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI  204 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence            764322   11223334433 36789999999998888887642    1       255665532221100         


Q ss_pred             ------------e-----cc-CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCC
Q 026679          138 ------------F-----SL-EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI  186 (235)
Q Consensus       138 ------------~-----~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  186 (235)
                                  .     .. ......|..|..||||++|++...+|.|.+|++.+.+....+..++
T Consensus       205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence                        0     00 1223568899999999999999999999999999988877776443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.21  E-value=4.7e-08  Score=70.59  Aligned_cols=195  Identities=16%  Similarity=0.215  Sum_probs=122.5

Q ss_pred             EEEeec-CCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeec
Q 026679           19 SLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG   97 (235)
Q Consensus        19 ~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~   97 (235)
                      ++.|.+ ++.++++--..+.|..|+..++.... +.......+++...+..++++...+ +.++|..+++..........
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~   81 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG   81 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC
Confidence            568888 66667776678999999987765433 4444444477773335555555544 45558877643222111112


Q ss_pred             C-CCcceeEEEEccCCCeEEEecCC--------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE-EeCCCCc
Q 026679           98 G-DTAEVCDIKFSNDGKSMLLTTTN--------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGT  167 (235)
Q Consensus        98 ~-~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~  167 (235)
                      . .....+.+++.|+|+..++....        |.|..++.. ++.......   -...+.++|+|+++.|+ +-+..+.
T Consensus        82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~---~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG---LGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE---ESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC---cccccceEECCcchheeecccccce
Confidence            2 34568899999999966665432        568888876 554333222   23367899999998775 5677888


Q ss_pred             EEEEEcCCCce-------eeeecCCCcceeEEEeecCCCEEEEc--ccceEEeeCCCCCCC
Q 026679          168 LHAWNINTRNE-------VACWNGNIGVVACLKWAPRRAMFVAA--SSVLSFWIPNPSSNS  219 (235)
Q Consensus       168 i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~i~iw~~~~~~~~  219 (235)
                      |..|++.....       ...+....+..-.+++..+|++.++.  ++.|.+++.++....
T Consensus       158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~  218 (246)
T PF08450_consen  158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLR  218 (246)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEE
T ss_pred             eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEE
Confidence            99999863221       12222222357899999999988774  478999998855433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.20  E-value=1.3e-10  Score=91.25  Aligned_cols=204  Identities=16%  Similarity=0.249  Sum_probs=139.3

Q ss_pred             hhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCccee-eeeee--ccCCceEEEcCCCCEEEEEecCCeEEEEec
Q 026679            8 RYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC-QGILR--LRGRPTVAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~-~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      -.+.||...|+.+.|+|.. ..+++++.|-.+..||++.... +..+.  ......++|+-....+.+.+....+.+||.
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~  187 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL  187 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence            3467899999999999965 6799999999999999987643 22222  122344889886555666667788999999


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc--EEE
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ--YVV  160 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~  160 (235)
                      +.+..   ......+|...+..++|.. -...+.+.+.|++|+.||............. ...++..-.+-|-|.  ++.
T Consensus       188 r~gs~---pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~m  263 (1081)
T KOG0309|consen  188 RKGST---PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIM  263 (1081)
T ss_pred             cCCCc---ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-ccCcceeccccccCceeEec
Confidence            98653   3555667888899998876 2345788899999999998765433332222 224566667777443  222


Q ss_pred             EeCCCCcEEEEEcCC----------CceeeeecCCCcceeEEEeecCC----------CEEEEcc--cceEEeeCCC
Q 026679          161 SGSGDGTLHAWNINT----------RNEVACWNGNIGVVACLKWAPRR----------AMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~----------~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~--~~i~iw~~~~  215 (235)
                      ---.+..+.+++.++          .++++.+.+|...|....|-..+          -.|++-+  .++++|-+..
T Consensus       264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            111222444444332          45688999999888877775432          3677777  6699998764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.19  E-value=1.3e-08  Score=85.50  Aligned_cols=198  Identities=13%  Similarity=0.172  Sum_probs=134.5

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEE----ecCcceeeeeeec-cCCceEEEcCCCCEEEEEecCCeEEEEecc---
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIW----DLRVNACQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSR---   84 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vw----d~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~---   84 (235)
                      ..+.|.++.+-++...++.+..+|.|.+.    +..+......-.. .++.+++|+||+++++..+.++++.+-+..   
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~  153 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP  153 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence            34689999999999888888899999999    5554443332222 345669999999999999999888775321   


Q ss_pred             -C-------------------CCCC--------Cc-------ee------EeecCCCcceeEEEEccCCCeEEEecC---
Q 026679           85 -S-------------------YDKG--------PF-------DT------FLVGGDTAEVCDIKFSNDGKSMLLTTT---  120 (235)
Q Consensus        85 -~-------------------~~~~--------~~-------~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~---  120 (235)
                       .                   +++.        ..       ..      ..+. ....-..++|-.||.++++.+-   
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~  232 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE  232 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence             0                   0000        00       00      0011 2234557899999999998764   


Q ss_pred             C---CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC---CCcEEEEEcCCCceeeeec----CCCccee
Q 026679          121 N---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNINTRNEVACWN----GNIGVVA  190 (235)
Q Consensus       121 d---~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~----~~~~~v~  190 (235)
                      .   ..+++|+- .|.....-+  .-.+--.+++|.|.|++||+.-.   ...|.+|.- +|..-..+.    .....|.
T Consensus       233 ~~~~R~iRVy~R-eG~L~stSE--~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~  308 (928)
T PF04762_consen  233 TGSRRVIRVYSR-EGELQSTSE--PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVI  308 (928)
T ss_pred             CCceeEEEEECC-CceEEeccc--cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceee
Confidence            2   57999994 466544333  22233456899999999998754   455778874 554444432    3456899


Q ss_pred             EEEeecCCCEEEEcc-cceEEeeCCC
Q 026679          191 CLKWAPRRAMFVAAS-SVLSFWIPNP  215 (235)
Q Consensus       191 ~~~~~~~~~~l~~~~-~~i~iw~~~~  215 (235)
                      .+.|++|+..|+..- ..|.+|-...
T Consensus       309 ~l~Wn~ds~iLAv~~~~~vqLWt~~N  334 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLEDRVQLWTRSN  334 (928)
T ss_pred             EEEECCCCCEEEEEecCCceEEEeeC
Confidence            999999999999976 5699997654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.19  E-value=1.3e-08  Score=86.93  Aligned_cols=160  Identities=11%  Similarity=0.183  Sum_probs=108.3

Q ss_pred             eEEEeec-CCCeeEEEeccceEEEEecCcceeeeeeec-----------------cCCceEEEcCCCCEE-EEEecCCeE
Q 026679           18 ISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRL-----------------RGRPTVAFDQQGLVF-AVAMEAGAI   78 (235)
Q Consensus        18 ~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l-~~~~~dg~v   78 (235)
                      ..++++| ++..+++.+.++.|++||..++.... +.+                 .....++++|+++.| ++-..++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            5789999 45666777788899999987764321 111                 011228899998854 455567999


Q ss_pred             EEEeccCCCCCCc---------eeEeecCC--------CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccC
Q 026679           79 KLFDSRSYDKGPF---------DTFLVGGD--------TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE  141 (235)
Q Consensus        79 ~i~d~~~~~~~~~---------~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  141 (235)
                      ++||+.++.....         ........        -.....++++++|+.+++-..++.|++||..++.........
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G  844 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG  844 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence            9999876432000         00000000        112457899999998888888999999999877654322110


Q ss_pred             -----------CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCce
Q 026679          142 -----------PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE  178 (235)
Q Consensus       142 -----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  178 (235)
                                 ..-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus       845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                       1112467899999999989989999999999988764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.17  E-value=1.8e-09  Score=86.68  Aligned_cols=179  Identities=12%  Similarity=0.158  Sum_probs=137.5

Q ss_pred             CCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeE
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD  105 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~  105 (235)
                      +..++.|+.-..+..+|+++.+..+........+.....+++.+++|...|+|.+-|.++.+.    ...+..|.+.+.+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~----iht~~aHs~siSD  222 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFET----IHTFDAHSGSISD  222 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCce----eeeeeccccceee
Confidence            456777777777888999888887777766655666667889999999999999999998776    7778889999986


Q ss_pred             EEEccCCCeEEEecC---------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC-CcEEEEeCCCCcEEEEEc--
Q 026679          106 IKFSNDGKSMLLTTT---------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNI--  173 (235)
Q Consensus       106 ~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~--  173 (235)
                      +..  .|+.|++++.         |.-|++||+|..+.+..+..+..+   .-+.|.|. ...+++++..|...+-|.  
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P---~flrf~Psl~t~~~V~S~sGq~q~vd~~~  297 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP---QFLRFHPSLTTRLAVTSQSGQFQFVDTAT  297 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc---hhhhhcccccceEEEEecccceeeccccc
Confidence            655  5888998875         455899999998877766665543   33778884 557888889999999993  


Q ss_pred             -CCCc-eeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          174 -NTRN-EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       174 -~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                       .+.. -+..+......+..+.+++++..++.+.  |.|.+|.-
T Consensus       298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence             3221 1222333345699999999999999998  88999973

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=5.5e-11  Score=95.11  Aligned_cols=195  Identities=17%  Similarity=0.249  Sum_probs=140.3

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecC--CeEEE
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEA--GAIKL   80 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d--g~v~i   80 (235)
                      +..+.|+.|+...+|++|+.+.++|+.|+..|.|+++++.+|........|+..+  +.-+.+|..+++.+.-  .-..+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            4566788899999999999999999999999999999999999999999998776  4445588776665543  35788


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC--CCCcceeeEEeCCCcE
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP--SPNTNTEATFTPDGQY  158 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~  158 (235)
                      |++..-. .+  ...+    ..-.++.|+.....-+.|+......+||+.++.....+-...  ....-+...|+|+..+
T Consensus      1172 W~~~s~~-~~--~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1172 WDASSTG-GP--RHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             hcccccc-Cc--cccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            9987622 11  1111    234567788766556667777789999999988776632211  1122366889999888


Q ss_pred             EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcccceEEeeCCC
Q 026679          159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNP  215 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~  215 (235)
                      ++-   ||  .+||++..+.++.+...... ..=.|+|.|.-++..+   .|||+.+
T Consensus      1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS---EIwD~RT 1292 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS---EIWDMRT 1292 (1516)
T ss_pred             Eee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec---hhhhhHH
Confidence            874   55  47999988877777544322 2335899998888776   4576654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.16  E-value=7e-08  Score=69.84  Aligned_cols=184  Identities=12%  Similarity=0.075  Sum_probs=120.3

Q ss_pred             EEeecCCCeeEEEe-----ccceEEEEecC-cceeeeeeeccCCce--EEEcCCCCEEEEEec-----------------
Q 026679           20 LCMSPVNDSFMSGS-----LDHSVRIWDLR-VNACQGILRLRGRPT--VAFDQQGLVFAVAME-----------------   74 (235)
Q Consensus        20 ~~~~~~~~~l~s~~-----~d~~i~vwd~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~-----------------   74 (235)
                      -.||+||++|++.-     ..|.|-|||.. ..+.+..+..+.+--  +.+.|+++.|+++..                 
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            47999999998864     35789999998 567777787777543  889999988887741                 


Q ss_pred             -CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCc-------EEEEEcCCCceeeeeccC-----
Q 026679           75 -AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-------IYVLDAYGGEKRCGFSLE-----  141 (235)
Q Consensus        75 -dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------i~~~d~~~~~~~~~~~~~-----  141 (235)
                       +.++...|..+++...........|.-.+..+++.++|..++..-..|.       |.+++  .++....+...     
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~  213 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWR  213 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHH
Confidence             1234444555544311111111446678999999999875555433332       33333  33333333322     


Q ss_pred             CCCCcceeeEEeCCCcEEEEeC-CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cce
Q 026679          142 PSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVL  208 (235)
Q Consensus       142 ~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i  208 (235)
                      .-.+.+-++++++++.++++.+ .-+.+.+||..+++.+....-  ..+..++-.+++ ++++.+ |.+
T Consensus       214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G~~  279 (305)
T PF07433_consen  214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQGQL  279 (305)
T ss_pred             hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCccE
Confidence            2236688999999998886554 567899999999998877653  346677777776 555555 543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.16  E-value=6.8e-08  Score=72.16  Aligned_cols=162  Identities=19%  Similarity=0.223  Sum_probs=111.0

Q ss_pred             eEEEeecCCCeeEEEe-c-cceEEEEecCcceeeeeeeccCCc----------------------------------e-E
Q 026679           18 ISLCMSPVNDSFMSGS-L-DHSVRIWDLRVNACQGILRLRGRP----------------------------------T-V   60 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~-~-d~~i~vwd~~~~~~~~~~~~~~~~----------------------------------~-~   60 (235)
                      ..++++|||++|+... . +..|-+.|+.+++.+..+......                                  . +
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~v  187 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEV  187 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeee
Confidence            3678999999888765 3 688999999877666544322100                                  0 0


Q ss_pred             ------------EEcC-CCCEEEEEecCCeEEEEeccCCCCCCceeEee--------cCCCcceeEEEEccCCCeEEEec
Q 026679           61 ------------AFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV--------GGDTAEVCDIKFSNDGKSMLLTT  119 (235)
Q Consensus        61 ------------~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~  119 (235)
                                  .+.+ +++.+++... |.|.+.|+.............        .-......-++++|+++.+++..
T Consensus       188 f~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~  266 (352)
T TIGR02658       188 FHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLA  266 (352)
T ss_pred             ecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEe
Confidence                        1123 6666666665 889999865443221111111        11233444599999999888843


Q ss_pred             C----------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-EEEEeC-CCCcEEEEEcCCCceeeeec
Q 026679          120 T----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGS-GDGTLHAWNINTRNEVACWN  183 (235)
Q Consensus       120 ~----------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~v~d~~~~~~~~~~~  183 (235)
                      .          .+.|.++|..+++.+..+....   .+..++++||++ +|++.. .++.|.++|..+++.+..+.
T Consensus       267 ~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       267 DQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             cCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            2          2579999999999988776542   478899999999 777665 57889999999999988873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.15  E-value=1.7e-07  Score=67.76  Aligned_cols=178  Identities=15%  Similarity=0.179  Sum_probs=113.9

Q ss_pred             eeEEEee-cCCCeeEEEeccceEEEEecCcceeeeeeecc----CC---ceEEEcCCCCEEEEEecC--------CeEEE
Q 026679           17 VISLCMS-PVNDSFMSGSLDHSVRIWDLRVNACQGILRLR----GR---PTVAFDQQGLVFAVAMEA--------GAIKL   80 (235)
Q Consensus        17 v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----~~---~~~~~~~~~~~l~~~~~d--------g~v~i   80 (235)
                      ...+++. +++ .|+.+..++ +.++|..+++........    ..   +-+++.|+|++.++....        |.+..
T Consensus        42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            5567777 554 455555544 556698888665555432    11   128999999977776543        45666


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEE-EecCCCcEEEEEcCCCce--e--ee-eccCCCCCcceeeEEeC
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML-LTTTNNNIYVLDAYGGEK--R--CG-FSLEPSPNTNTEATFTP  154 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~--~--~~-~~~~~~~~~i~~~~~~~  154 (235)
                      ++.. ++     .......-...+.++|+|+++.|+ +-+..+.|..|++.....  .  .. .......+..-.+++.+
T Consensus       120 ~~~~-~~-----~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~  193 (246)
T PF08450_consen  120 IDPD-GK-----VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS  193 (246)
T ss_dssp             EETT-SE-----EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT
T ss_pred             ECCC-Ce-----EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC
Confidence            6665 22     111222234578999999998776 556688899999864322  1  11 22233223477899999


Q ss_pred             CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEee-cCCCEEEE
Q 026679          155 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA-PRRAMFVA  203 (235)
Q Consensus       155 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~  203 (235)
                      +|++.++....+.|.++|.+ |+.+..+......+++++|. |+...|..
T Consensus       194 ~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  194 DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred             CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence            99988888788999999986 88888887665689999995 56555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=2.8e-08  Score=79.59  Aligned_cols=195  Identities=15%  Similarity=0.141  Sum_probs=130.0

Q ss_pred             EeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceE--EEcC-CCCEEEEEecCC-----eEEEEeccCCCCCC--
Q 026679           21 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV--AFDQ-QGLVFAVAMEAG-----AIKLFDSRSYDKGP--   90 (235)
Q Consensus        21 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~-~~~~l~~~~~dg-----~v~i~d~~~~~~~~--   90 (235)
                      +|++.+..++.|+.+|.|.+.+ ..-+.+..++......+  -+.- +...|++.+.|+     .+++|+++..+...  
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            4677788999999999988876 23444466666554432  2222 335677766654     58999998654322  


Q ss_pred             cee--Eee-----cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC--CCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           91 FDT--FLV-----GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY--GGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        91 ~~~--~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                      ...  ...     ...+.++.+++.+.+-+.+++|-.+|.|..+.-.  ..+..+..-.+....+|+.+++..+++.++.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            212  111     1235788999999999999999999999988521  1111122223455688999999998887333


Q ss_pred             eCCCCcEEEEEcCCCce-eeeecCCCcceeEEEeecCCC-EEEEcccceEEeeCCCC
Q 026679          162 GSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRA-MFVAASSVLSFWIPNPS  216 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~i~iw~~~~~  216 (235)
                      ...-..|.+|.+....+ ...+..|..+..|-.+++... ++++++.-+.+|+.+..
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~  245 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR  245 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc
Confidence            33344689999874332 444667778999999998666 55555688999998754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=1.5e-09  Score=85.19  Aligned_cols=194  Identities=15%  Similarity=0.247  Sum_probs=135.6

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeee-eeeccC---CceEEEcCCCCEEEEEecCCeEEEE
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG-ILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      .-+++.||++.|.-+.|+.+.+.|-|+..+|.|.||-+-.+.-.. .+....   +.+++|..+|..++....||.|.+=
T Consensus        63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG  142 (1189)
T KOG2041|consen   63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG  142 (1189)
T ss_pred             hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence            446789999999999999998999999999999999987664222 222222   3348999999999999999999887


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCcee-----eeec----cCCCCCcceeeEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR-----CGFS----LEPSPNTNTEATF  152 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~----~~~~~~~i~~~~~  152 (235)
                      .+.....   .-..+.+  .....+.|++|.+.++.+-.+|.+.+||....-..     ....    ....+..+..+.|
T Consensus       143 svdGNRI---wgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w  217 (1189)
T KOG2041|consen  143 SVDGNRI---WGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW  217 (1189)
T ss_pred             eecccee---cchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence            7765332   1111111  23457889999999999999999999997532110     0000    0111122444444


Q ss_pred             --------eCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          153 --------TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       153 --------~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                              -|+...|+.+-.+|.+.+-.-.+......+. ..-.+..+.|+++|..|+.++
T Consensus       218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG  277 (1189)
T KOG2041|consen  218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCG  277 (1189)
T ss_pred             ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEcc
Confidence                    3577889999999998887654443333333 336788999999999999987

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.3e-08  Score=77.76  Aligned_cols=182  Identities=10%  Similarity=0.039  Sum_probs=129.3

Q ss_pred             eEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEec-----------CCeEEEEeccCC
Q 026679           18 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAME-----------AGAIKLFDSRSY   86 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~v~i~d~~~~   86 (235)
                      +-+.|||.|.+|+|-..-| |.+|--.+...++.+..+...-+.|||..++|++-+.           ...+.|||+.++
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG  292 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG  292 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence            5689999999999998766 8899877777888888888888999999999998753           257999999998


Q ss_pred             CCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC--
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG--  164 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  164 (235)
                      ......... ......-.-+.||.|++++|.-.. ..|.+|+..+-.++-...+..  ..|....|+|.++.||.=..  
T Consensus       293 ~lkrsF~~~-~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki--~gIr~FswsP~~~llAYwtpe~  368 (698)
T KOG2314|consen  293 LLKRSFPVI-KSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI--SGIRDFSWSPTSNLLAYWTPET  368 (698)
T ss_pred             chhcceecc-CCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCC--ccccCcccCCCcceEEEEcccc
Confidence            753221111 111122335789999998887665 569999977644433323322  44888999999998875432  


Q ss_pred             ---CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEc
Q 026679          165 ---DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA  204 (235)
Q Consensus       165 ---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  204 (235)
                         -..+.+-.+.+++.+.+..-+.-.=..+.|-.+|.+|+.-
T Consensus       369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvk  411 (698)
T KOG2314|consen  369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVK  411 (698)
T ss_pred             cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEE
Confidence               2346777777777776665554444567788888888754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.11  E-value=5.9e-08  Score=69.66  Aligned_cols=185  Identities=16%  Similarity=0.119  Sum_probs=117.2

Q ss_pred             CCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEee-cCC--C-
Q 026679           25 VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-GGD--T-  100 (235)
Q Consensus        25 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~--~-  100 (235)
                      ++..+++++.++.+..||..+|+.+................+..++++..++.+..+|..+++.    .... ...  . 
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~----~W~~~~~~~~~~  110 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKV----LWSIYLTSSPPA  110 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCE----EEEEEE-SSCTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcce----eeeecccccccc
Confidence            5677888889999999999999998888764432221233555667777888999999888775    2221 111  1 


Q ss_pred             cceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc--------ceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679          101 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT--------NTEATFTPDGQYVVSGSGDGTLHAWN  172 (235)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~dg~i~v~d  172 (235)
                      ..........++..++++..++.|..+|+++|+.+...........        +..-....++ .++.++.++.+..+|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d  189 (238)
T PF13360_consen  111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVD  189 (238)
T ss_dssp             STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred             ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence            1112223333477888888899999999999999877766432211        1111122244 677777777544449


Q ss_pred             cCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          173 INTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +.+++.+-...  ...+..+ ..+++..|+.++  +.+..||.++++
T Consensus       190 ~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  190 LATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             TTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             CCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            99998664333  2223331 345666666665  889999998764

...

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.09  E-value=1.4e-09  Score=85.58  Aligned_cols=200  Identities=12%  Similarity=0.212  Sum_probs=139.5

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcc-eeeeee---eccCCceEEEcCC--CCEEEEEecCCeEEEEeccCCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-ACQGIL---RLRGRPTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYD   87 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~---~~~~~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~   87 (235)
                      .+.+.++..+|.|+-++.++.-| +.+-|+... .+...+   ..-.+.-..|+|.  -.+-++......-.+|++....
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            35778889999999899888877 556677653 222222   2222333667664  3455666666677889987655


Q ss_pred             CCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG  166 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  166 (235)
                      .. ...+.+.+|...++.+.|+|+ ...+++++.|..+..||+++.....-.. ..-......+.|+-....+++.+...
T Consensus       103 ~~-aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-~~w~s~asqVkwnyk~p~vlasshg~  180 (1081)
T KOG0309|consen  103 SN-AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-SSWRSAASQVKWNYKDPNVLASSHGN  180 (1081)
T ss_pred             cc-ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-ecccccCceeeecccCcchhhhccCC
Confidence            32 345677899999999999985 4578888999999999999865432222 22224467789987555566666677


Q ss_pred             cEEEEEcCC-CceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCC
Q 026679          167 TLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       167 ~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~  216 (235)
                      .|.+||++. +.++..+++|...|..+.|..-. ..+.+.+  ++++.|+++..
T Consensus       181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            899999985 45678889999999999987632 2333443  88999999654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.08  E-value=1.1e-07  Score=71.93  Aligned_cols=193  Identities=16%  Similarity=0.237  Sum_probs=132.1

Q ss_pred             cceeEEEeecCCC--eeEE-----EeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEe-----------c
Q 026679           15 ERVISLCMSPVND--SFMS-----GSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAM-----------E   74 (235)
Q Consensus        15 ~~v~~~~~~~~~~--~l~s-----~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-----------~   74 (235)
                      ..|....|+|.++  .|+.     .+.++++++|.+..+..+.+-..-.  ...+.|.+.|+++++-.           .
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            4677888898643  3443     4668899999998666555443333  23388999998776532           1


Q ss_pred             CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec--CCCcEEEEEcCCCceeeeeccCCCCCcceeeEE
Q 026679           75 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF  152 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~  152 (235)
                      ...+.+++++....    ... ....++|..++|.|.++.+++.+  .+..+.++|++.. ....+. ..   .-..+.|
T Consensus       254 esnLyl~~~~e~~i----~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P-e~---~rNT~~f  323 (561)
T COG5354         254 ESNLYLLRITERSI----PVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP-EQ---KRNTIFF  323 (561)
T ss_pred             cceEEEEeeccccc----cee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC-Cc---ccccccc
Confidence            35678888875432    111 14568999999999988877655  6888999999876 332222 22   2345889


Q ss_pred             eCCCcEEEEeCC---CCcEEEEEcCCCceee-eecCCCcceeEEEeecCCCEEEEcc--------cceEEeeCCCCCCC
Q 026679          153 TPDGQYVVSGSG---DGTLHAWNINTRNEVA-CWNGNIGVVACLKWAPRRAMFVAAS--------SVLSFWIPNPSSNS  219 (235)
Q Consensus       153 ~~~~~~l~~~~~---dg~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~--------~~i~iw~~~~~~~~  219 (235)
                      +|.+++++.++-   .|.+-+||......+. .+.+.  ...-+.|+|+++++.+..        ..++||++.+....
T Consensus       324 sp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         324 SPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             cCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence            999999988665   4779999986554443 55443  345578999999998874        45999999776543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.08  E-value=1.2e-07  Score=79.84  Aligned_cols=200  Identities=11%  Similarity=0.170  Sum_probs=127.1

Q ss_pred             cccceeEEEeecCCCeeEEEec------cceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEec---CCeEEEE
Q 026679           13 HKERVISLCMSPVNDSFMSGSL------DHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAME---AGAIKLF   81 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~---dg~v~i~   81 (235)
                      +...-..++|-.||+++|+.+.      -+.+|||+- .|....+-..-.  ...++|.|.|+++|+.-.   ...|.+|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            3345567899999999998765      257999995 466544443222  234999999999998865   4567777


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee--eccCCCCCcceeeEEeCC-CcE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG--FSLEPSPNTNTEATFTPD-GQY  158 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~~i~~~~~~~~-~~~  158 (235)
                      .-+...... ...........|..+.|++|+..|+....|. |.+|-..+.....+  +..... ..+..+.|+|. ...
T Consensus       287 ErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~  363 (928)
T PF04762_consen  287 ERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLR  363 (928)
T ss_pred             ecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCE
Confidence            755433221 1222234566899999999999999877655 99999887654333  333222 23445899994 444


Q ss_pred             EEEeCCCCcEEEEEcC----CCc--------eeeeec-----------------------CCCcceeEEEeecCCCEEEE
Q 026679          159 VVSGSGDGTLHAWNIN----TRN--------EVACWN-----------------------GNIGVVACLKWAPRRAMFVA  203 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~----~~~--------~~~~~~-----------------------~~~~~v~~~~~~~~~~~l~~  203 (235)
                      |...+.+|.+..+++.    .+.        .+..+.                       ....+|.+++|++++..+++
T Consensus       364 L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av  443 (928)
T PF04762_consen  364 LHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV  443 (928)
T ss_pred             EEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE
Confidence            6666665666554431    110        011110                       12468999999998864433


Q ss_pred             --cccceEEeeCCCC
Q 026679          204 --ASSVLSFWIPNPS  216 (235)
Q Consensus       204 --~~~~i~iw~~~~~  216 (235)
                        ..+.+.+|.....
T Consensus       444 l~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  444 LTSDGSLSIYEWDLK  458 (928)
T ss_pred             EECCCCEEEEEecCC
Confidence              3488999986554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.07  E-value=1.5e-09  Score=92.67  Aligned_cols=184  Identities=10%  Similarity=0.172  Sum_probs=129.9

Q ss_pred             CeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEE
Q 026679           27 DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI  106 (235)
Q Consensus        27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~  106 (235)
                      +.+.....++...-|..+.......-..++...+.-+|...+.++|+.||.+++|.-..++.  .......+. ..|+.+
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~--v~~~rt~g~-s~vtr~ 2257 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ--VVCFRTAGN-SRVTRS 2257 (2439)
T ss_pred             ccCCcccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe--EEEeeccCc-chhhhh
Confidence            33444444555555554444444444445555577788899999999999999999876553  223333344 889999


Q ss_pred             EEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC---CCCcEEEEEcCC-Cceeeee
Q 026679          107 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS---GDGTLHAWNINT-RNEVACW  182 (235)
Q Consensus       107 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~~-~~~~~~~  182 (235)
                      .|+.+|+.+..+..||.+.+|... .+...  ....|......+.|-.  ..+++++   .++.+.+||..- +..-..-
T Consensus      2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~--s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYT--SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred             hhcccCCceeeeccCCceeecccC-Cccee--ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence            999999999999999999999986 33332  3444555566677754  5666654   468899999642 1111122


Q ss_pred             cCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          183 NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       183 ~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      ..|.+.++++++.|..+.+++|+  |.+++||++..++
T Consensus      2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred             eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence            67999999999999999999999  8899999976543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.06  E-value=1.8e-09  Score=84.81  Aligned_cols=121  Identities=12%  Similarity=0.146  Sum_probs=96.3

Q ss_pred             EeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679           94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  173 (235)
                      ..+.+|...|..+.|+.+.+.|-+...+|.|.+|-+-.++....+.....++.|.+++|..+|..++..-.||.|.|=.+
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            45678999999999999999999999999999999999988777666777788999999999999999999999988777


Q ss_pred             CCCcee-eeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          174 NTRNEV-ACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       174 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      ...+.- ..+++  .....+.|++|.+.++.+-  |.+.+||..+.
T Consensus       145 dGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn  188 (1189)
T KOG2041|consen  145 DGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGN  188 (1189)
T ss_pred             ccceecchhcch--heccceeecccHHHHHhhhcCCcEEEeccccc
Confidence            433221 12222  2345788999988777664  77888887654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.03  E-value=9.2e-08  Score=72.38  Aligned_cols=196  Identities=14%  Similarity=0.164  Sum_probs=134.4

Q ss_pred             cceeEEEeecCCCeeEEEeccc---------------eEEEEecCcceeeeeeeccCCc-----eEEEcCCCCEEEEEec
Q 026679           15 ERVISLCMSPVNDSFMSGSLDH---------------SVRIWDLRVNACQGILRLRGRP-----TVAFDQQGLVFAVAME   74 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~---------------~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~   74 (235)
                      ..|..+.|+|++++|.+-+...               .+.+||+.++..+..+.....+     .+.|+-+++++|-. .
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v  150 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V  150 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence            4688899999999999876543               4899999999999888776654     58888888876655 3


Q ss_pred             CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCC--eEEE-----ecCCCcEEEEEcCCCceeeeeccCCCCCcc
Q 026679           75 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK--SMLL-----TTTNNNIYVLDAYGGEKRCGFSLEPSPNTN  147 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  147 (235)
                      ...+.++++ +..........+.  ...+....|+|.++  .|+.     ....+.+++|.+..+..+....+-.-.  -
T Consensus       151 ~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~--~  225 (561)
T COG5354         151 GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS--G  225 (561)
T ss_pred             cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec--c
Confidence            457999996 3332211111111  35688889999643  3443     345788999999877766554443221  2


Q ss_pred             eeeEEeCCCcEEEEeC-----------CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc----cceEEee
Q 026679          148 TEATFTPDGQYVVSGS-----------GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS----SVLSFWI  212 (235)
Q Consensus       148 ~~~~~~~~~~~l~~~~-----------~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~i~iw~  212 (235)
                      ..+.|.+.|++|++--           ....++++++.... +.......++|...+|.|.++.+++.+    ..+.+++
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~  304 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD  304 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecc
Confidence            4588999999876431           13468888886333 333335678999999999988777665    4477777


Q ss_pred             CCCCC
Q 026679          213 PNPSS  217 (235)
Q Consensus       213 ~~~~~  217 (235)
                      +++..
T Consensus       305 lr~Nl  309 (561)
T COG5354         305 LRGNL  309 (561)
T ss_pred             cccce
Confidence            77653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=2.3e-09  Score=82.03  Aligned_cols=153  Identities=14%  Similarity=0.186  Sum_probs=113.6

Q ss_pred             CCCCEEEEEecCCeEEEEeccCCCCC---CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc
Q 026679           64 QQGLVFAVAMEAGAIKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL  140 (235)
Q Consensus        64 ~~~~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  140 (235)
                      .+.+.+++++.|.+|++|.++.....   ....+....|..+|.++.|-.+-+++++  .||.|.+||.--++.+.....
T Consensus       745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~d  822 (1034)
T KOG4190|consen  745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMED  822 (1034)
T ss_pred             ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhc
Confidence            45677999999999999999754322   2356778899999999999988776654  578899999888877765544


Q ss_pred             CCCCCcceeeEEeC--CCcEEEEe-CCCCcEEEEEcCCCceeeeec-----CCCcceeEEEeecCCCEEEEcc--cceEE
Q 026679          141 EPSPNTNTEATFTP--DGQYVVSG-SGDGTLHAWNINTRNEVACWN-----GNIGVVACLKWAPRRAMFVAAS--SVLSF  210 (235)
Q Consensus       141 ~~~~~~i~~~~~~~--~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~--~~i~i  210 (235)
                      ....+.+..+..-|  +...++.| +...+++++|.+..+....++     +....+.+++..|.|+.++++=  |.+.+
T Consensus       823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~  902 (1034)
T KOG4190|consen  823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI  902 (1034)
T ss_pred             CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence            44434444444434  34455444 678899999999988776664     3446789999999999998883  88888


Q ss_pred             eeCCCCCC
Q 026679          211 WIPNPSSN  218 (235)
Q Consensus       211 w~~~~~~~  218 (235)
                      .|.++++.
T Consensus       903 LDaR~G~v  910 (1034)
T KOG4190|consen  903 LDARNGKV  910 (1034)
T ss_pred             EecCCCce
Confidence            88877663

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.99  E-value=1.3e-09  Score=75.55  Aligned_cols=146  Identities=12%  Similarity=0.076  Sum_probs=93.7

Q ss_pred             CCCeeEEEeccceEEEEecCcce-eeeeeeccC--CceEEEcCCCCEEEEEe-----cCCeEEEEeccCCCCCCceeEee
Q 026679           25 VNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRG--RPTVAFDQQGLVFAVAM-----EAGAIKLFDSRSYDKGPFDTFLV   96 (235)
Q Consensus        25 ~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~--~~~~~~~~~~~~l~~~~-----~dg~v~i~d~~~~~~~~~~~~~~   96 (235)
                      .++.++++..||.+.+++.+.-. ....+....  ....++...++.+.++.     .-+..+.|+++..+......   
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~---  176 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK---  176 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc---
Confidence            35679999999999999876521 111111111  11133333444444332     23456667766543211111   


Q ss_pred             cCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEEeCCCCcEEEEEcC
Q 026679           97 GGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNIN  174 (235)
Q Consensus        97 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~  174 (235)
                       .....|.+++-+|. ...+++|+.||.+-+||.+....... .+..|+.++..+-|+| ++..|+++++||.+.-||..
T Consensus       177 -~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S-~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  177 -KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS-LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             -cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH-HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence             12234888998985 45667788899999999998744332 3456778899999999 68899999999999999975


Q ss_pred             C
Q 026679          175 T  175 (235)
Q Consensus       175 ~  175 (235)
                      +
T Consensus       255 ~  255 (319)
T KOG4714|consen  255 T  255 (319)
T ss_pred             C
Confidence            3

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.99  E-value=1.9e-08  Score=71.73  Aligned_cols=195  Identities=12%  Similarity=0.258  Sum_probs=122.6

Q ss_pred             cceeEEEeecCC--CeeEEEeccceEEEEecCcceee---------------------------eeee------------
Q 026679           15 ERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVNACQ---------------------------GILR------------   53 (235)
Q Consensus        15 ~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~---------------------------~~~~------------   53 (235)
                      ..|..+.|..++  ..++..+.|++|++|.+......                           ..+.            
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r  165 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR  165 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence            457888887654  45777788999999987532100                           0000            


Q ss_pred             ----ccC--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCC-----cceeEEEEccC-CCeEEEecCC
Q 026679           54 ----LRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-----AEVCDIKFSND-GKSMLLTTTN  121 (235)
Q Consensus        54 ----~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~d  121 (235)
                          .|.  ...+.+..+.+.++++ .|-.|.+|++.-... .........|.     .-|++..|+|. ...+...+..
T Consensus       166 vyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~-sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk  243 (460)
T COG5170         166 VYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDG-SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK  243 (460)
T ss_pred             eccccceeEeeeeeecCchheeeec-cceeeeeccccccCC-ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence                011  1125566666666655 466899999876553 22333333432     45788899995 4566677889


Q ss_pred             CcEEEEEcCCCce------eeeeccCC--------CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC-CceeeeecCCC
Q 026679          122 NNIYVLDAYGGEK------RCGFSLEP--------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNI  186 (235)
Q Consensus       122 ~~i~~~d~~~~~~------~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~  186 (235)
                      |.|++-|+|....      +......+        -...|..+.|+++|+++++-+.- ++++||.+. ..++.++..|.
T Consensus       244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~  322 (460)
T COG5170         244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHC  322 (460)
T ss_pred             CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHH
Confidence            9999999984321      11111111        12567889999999999887654 799999975 44566664441


Q ss_pred             ------------cce---eEEEeecCCCEEEEcc--cceEEee
Q 026679          187 ------------GVV---ACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       187 ------------~~v---~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                                  ..|   ..+.|+.|...+++|+  +..-+|-
T Consensus       323 ~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         323 DLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             HHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence                        112   3567888888888887  4455554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.98  E-value=1.1e-08  Score=82.40  Aligned_cols=150  Identities=14%  Similarity=0.152  Sum_probs=113.9

Q ss_pred             eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEec---------CCeEEEEeccCCC
Q 026679           17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAME---------AGAIKLFDSRSYD   87 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------dg~v~i~d~~~~~   87 (235)
                      |+-|+.  +++.+.+|...|+|.+-|.++.+.++++..|...+.+|+-.|+.|++++.         |.-|++||++...
T Consensus       180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr  257 (1118)
T KOG1275|consen  180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR  257 (1118)
T ss_pred             eEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence            444443  47899999999999999999999999999999999999999999999985         5578999999876


Q ss_pred             CCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCC-ce-eeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGG-EK-RCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~-~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                      ......+.    . ...-+.|+|. ...+++++..|...+-|..+. .+ ...+..+.....+..+.++++++.++.|..
T Consensus       258 al~PI~~~----~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~  332 (1118)
T KOG1275|consen  258 ALSPIQFP----Y-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH  332 (1118)
T ss_pred             ccCCcccc----c-CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence            52222221    1 1234567774 456888899999999993321 11 222333444455899999999999999999


Q ss_pred             CCcEEEEEc
Q 026679          165 DGTLHAWNI  173 (235)
Q Consensus       165 dg~i~v~d~  173 (235)
                      +|.|.+|.-
T Consensus       333 ~g~v~~wa~  341 (1118)
T KOG1275|consen  333 EGHVNLWAD  341 (1118)
T ss_pred             cCcEeeecC
Confidence            999999983

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=5.9e-09  Score=75.12  Aligned_cols=140  Identities=11%  Similarity=0.173  Sum_probs=101.9

Q ss_pred             EEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-----eeeeeccCCCC
Q 026679           70 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-----KRCGFSLEPSP  144 (235)
Q Consensus        70 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~  144 (235)
                      ++.+.+-.+-+-|++++-....      ...+.|.++.|...++.++.|+.+|.|..+|++.+.     +.+.+   -|.
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl---yh~  298 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSF------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL---YHD  298 (425)
T ss_pred             ecccccceeEEEEeeccccccc------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE---EcC
Confidence            4455566788888887653111      244678899999889999999999999999998752     22222   244


Q ss_pred             CcceeeEEeC-CCcEEEEeCCCCcEEEEEcCCCce---eeeecCCCccee--EEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          145 NTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNE---VACWNGNIGVVA--CLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       145 ~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~v~--~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      ..|+++..-. ++++|++.+.+|+|.+||++--++   +.++.+|...-.  -+...+....+++++  .-.+||.++.+
T Consensus       299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence            6688887766 788999999999999999987666   888888854322  233456666777766  44999999865


Q ss_pred             CC
Q 026679          217 SN  218 (235)
Q Consensus       217 ~~  218 (235)
                      .+
T Consensus       379 hL  380 (425)
T KOG2695|consen  379 HL  380 (425)
T ss_pred             ce
Confidence            44

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1.9e-08  Score=74.95  Aligned_cols=209  Identities=13%  Similarity=0.164  Sum_probs=141.6

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcc---eeeeeeeccCCc--eEEEcCCCCEEEEEec-CCeEEEEeccC
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN---ACQGILRLRGRP--TVAFDQQGLVFAVAME-AGAIKLFDSRS   85 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~--~~~~~~~~~~l~~~~~-dg~v~i~d~~~   85 (235)
                      -|.+.|+.+... -.+++.+++.||.++.|.-..-   +.+..+..|-..  .++.+-++.++.+.+. |..++++|+.+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            377888876554 3579999999999999975331   222333334332  3777889999999777 99999999988


Q ss_pred             CCCCCceeEeecCCCcceeEEEEcc-CCC-eEEE-ecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSN-DGK-SMLL-TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      .....  ...+...++.+..+ .+| +.. .+++ .-.++.+.++|-....+...+.-.-|..+|.++.+.|-+..+++.
T Consensus        86 ~Dmin--miKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   86 FDMIN--MIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             cchhh--hcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence            66421  12222223333322 222 111 2333 335889999998776654444455677889999999999999999


Q ss_pred             CCCCcEEEEEcCC------Cceee---------eecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCCCCCCC
Q 026679          163 SGDGTLHAWNINT------RNEVA---------CWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDEST  224 (235)
Q Consensus       163 ~~dg~i~v~d~~~------~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~~~~~~  224 (235)
                      ...|.|.-|....      .+...         .+........++.|+|++..+.+-+  ..|+++++.++++.....+
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence            9999999999762      11111         1222345778999999999998887  6699999988876654433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.94  E-value=1.1e-06  Score=62.66  Aligned_cols=200  Identities=9%  Similarity=0.109  Sum_probs=114.4

Q ss_pred             hhcccccceeEEEeecCCC-eeEEEeccceEEEEecCcceeeeeeeccCC---ceEEEcCCCCEEEEEecCCeEEEEecc
Q 026679            9 YFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGR---PTVAFDQQGLVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~i~d~~   84 (235)
                      .+.+-.+.+..++|+|+.+ ++++....+.|...+. +|+.+..+...+.   ..+++..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4455556799999999755 5666667788888886 5778887776552   238888778777766668999999985


Q ss_pred             CCCCCC-c---eeEeec---CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC---Cceeeee-----c-cCCCCCcce
Q 026679           85 SYDKGP-F---DTFLVG---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG---GEKRCGF-----S-LEPSPNTNT  148 (235)
Q Consensus        85 ~~~~~~-~---~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~-----~-~~~~~~~i~  148 (235)
                      ...... .   ..+.+.   .++..+-.++|+|.++.|+++-...-..+|.+..   .......     . .......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            432211 1   111211   2445688999999888888887776666776653   1111110     0 111223477


Q ss_pred             eeEEeCC-CcEEEEeCCCCcEEEEEcCCCceeeeecCCC---------cceeEEEeecCCCEEEEcc-cceEE
Q 026679          149 EATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACWNGNI---------GVVACLKWAPRRAMFVAAS-SVLSF  210 (235)
Q Consensus       149 ~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~-~~i~i  210 (235)
                      +++++|. +++++....+..|..+| .+|+.+..+.-..         ...-.|+|.++|++.+++- +-.++
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~  246 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR  246 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence            8999994 67778888889999999 5777765553221         2578999999998888776 43433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.94  E-value=9e-08  Score=73.77  Aligned_cols=190  Identities=19%  Similarity=0.287  Sum_probs=121.6

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEe---cc-ceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEe-cCCe--E
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGS---LD-HSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAM-EAGA--I   78 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d-~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-~dg~--v   78 (235)
                      .+.+..-...+..-+|+|++..++..+   .. ..+.++++++++............ .+|+|+|+.++.+. .||.  |
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i  264 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence            334444445677778999987765442   22 358999999988777777555444 89999998877664 4564  5


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CC--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCC
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      .++|+.....     ..+....+.-..-.|+|||++++..+. .|  .|.++++..+.. ..+.......  ..-.|+||
T Consensus       265 y~~dl~~~~~-----~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~--~~p~~Spd  336 (425)
T COG0823         265 YLMDLDGKNL-----PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN--SNPVWSPD  336 (425)
T ss_pred             EEEcCCCCcc-----eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC--cCccCCCC
Confidence            5556665542     112222233336789999999988765 33  477777766654 3334333322  25789999


Q ss_pred             CcEEEEeCC-CCc--EEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          156 GQYVVSGSG-DGT--LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       156 ~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      |++|+..+. +|.  |.+.|+.++.....+. .......-.|.|++..++..+
T Consensus       337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         337 GDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             CCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence            999987664 344  6677776665433333 333445567888888887766

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=6.8e-08  Score=71.09  Aligned_cols=82  Identities=18%  Similarity=0.292  Sum_probs=68.0

Q ss_pred             hhhhcccccceeEEEeecCCC-eeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcCCC-CEEEEEecCCeEEEEec
Q 026679            7 LRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQG-LVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~-~~l~~~~~dg~v~i~d~   83 (235)
                      ...+.+|...|.+++|+|..+ ++..++.+..|+|.|+++......+..+.. .+++|.-+. +++..|..+|.|.+||+
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            445678889999999999776 788899999999999999988888877753 348888755 57788889999999999


Q ss_pred             cCCCC
Q 026679           84 RSYDK   88 (235)
Q Consensus        84 ~~~~~   88 (235)
                      +..+.
T Consensus       266 R~~~~  270 (463)
T KOG1645|consen  266 RQPEG  270 (463)
T ss_pred             cCCCc
Confidence            97653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=4.1e-09  Score=79.05  Aligned_cols=160  Identities=16%  Similarity=0.207  Sum_probs=118.1

Q ss_pred             ceeEEEeecCC-CeeEEEeccceEEEEecCccee------eeeeecc--------CCceEEEcCCCCEEEEEecCCeEEE
Q 026679           16 RVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNAC------QGILRLR--------GRPTVAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus        16 ~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~------~~~~~~~--------~~~~~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      ....++..|.. ..+++++.|..+++||.+.-..      +..+..+        .+++++++.++.-++++..|-.|++
T Consensus       283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL  362 (559)
T KOG1334|consen  283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL  362 (559)
T ss_pred             eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence            46778888866 4799999999999999764221      1222111        2445899988888888888889999


Q ss_pred             EeccCCCCC---------CceeEeecCCC--cceeEEEE-ccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679           81 FDSRSYDKG---------PFDTFLVGGDT--AEVCDIKF-SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT  148 (235)
Q Consensus        81 ~d~~~~~~~---------~~~~~~~~~~~--~~v~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~  148 (235)
                      |.-..+...         +.....+++|.  ..|..+-| -|..+++++|+.-|.|.+|+-.+++.+..+....+  -|+
T Consensus       363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVN  440 (559)
T KOG1334|consen  363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVN  440 (559)
T ss_pred             eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--eEe
Confidence            954432220         11122245554  34666665 57889999999999999999999998887776655  699


Q ss_pred             eeEEeCCCcEEEEeCCCCcEEEEEcCCCc
Q 026679          149 EATFTPDGQYVVSGSGDGTLHAWNINTRN  177 (235)
Q Consensus       149 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  177 (235)
                      |+.-+|--..||+++-|..|+||...+.+
T Consensus       441 CLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  441 CLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             ccCCCCCCchhhccCCccceeeecCCccc
Confidence            99999999999999999999999875433

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=2.3e-07  Score=73.90  Aligned_cols=209  Identities=10%  Similarity=0.106  Sum_probs=145.9

Q ss_pred             hhhhhhhhcccccceeEEEeecCC------------CeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC---C
Q 026679            3 DNRILRYFKGHKERVISLCMSPVN------------DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ---Q   65 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~---~   65 (235)
                      +-+.++.+..|...|+.+.|.|..            -+||++...|.|.+||...+..+..+..+..++  ++|-+   +
T Consensus        44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~  123 (1062)
T KOG1912|consen   44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD  123 (1062)
T ss_pred             hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence            457788899999999999998731            147788888999999999988888887776655  66655   3


Q ss_pred             C-CEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCC-------Cceee
Q 026679           66 G-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYG-------GEKRC  136 (235)
Q Consensus        66 ~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~-------~~~~~  136 (235)
                      . ..|++-.....+.+|+..+++.    ..+.........|+.+.| |.+++...+..|.+.+-+.-.       ++..+
T Consensus       124 Srd~LlaIh~ss~lvLwntdtG~k----~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q  199 (1062)
T KOG1912|consen  124 SRDVLLAIHGSSTLVLWNTDTGEK----FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ  199 (1062)
T ss_pred             chheeEEecCCcEEEEEEccCCce----eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence            3 5677777788999999998875    444444556677889998 777888877788777766432       22222


Q ss_pred             eeccCCC--------------C---------CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEE
Q 026679          137 GFSLEPS--------------P---------NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLK  193 (235)
Q Consensus       137 ~~~~~~~--------------~---------~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~  193 (235)
                      ....+..              .         .....++|+|.-+-++.......+.++|++-..++....-..+.+.-+.
T Consensus       200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~  279 (1062)
T KOG1912|consen  200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVD  279 (1062)
T ss_pred             EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeE
Confidence            1111100              0         0112356788766555555677799999998888888876667777788


Q ss_pred             eecCCC--EEEEcc--cceEEeeCCC
Q 026679          194 WAPRRA--MFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       194 ~~~~~~--~l~~~~--~~i~iw~~~~  215 (235)
                      |-|+++  .|.+.-  |.+.+|.-+.
T Consensus       280 vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  280 VLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             eccCCCcceEEEEecCCeEEEEEeec
Confidence            888653  454443  8888887644

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=5.3e-07  Score=71.99  Aligned_cols=157  Identities=15%  Similarity=0.179  Sum_probs=109.5

Q ss_pred             hcccccceeEEEeecC-------------CCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCC-----CCEEE
Q 026679           10 FKGHKERVISLCMSPV-------------NDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQ-----GLVFA   70 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~-------------~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~-----~~~l~   70 (235)
                      |..|.+.|.-..+.-+             |.++++||.||+|.|-.+-+.+....+..+. ..+++++|+     .+.++
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv  133 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFV  133 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhhee
Confidence            3456666665555444             8999999999999999998888777776655 456999996     57899


Q ss_pred             EEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC----Cc
Q 026679           71 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP----NT  146 (235)
Q Consensus        71 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----~~  146 (235)
                      +|+..| +.++.-+=....  ....+....++|.++.|.  |+++|-+.++| |++||..+++.+..++.+...    ..
T Consensus       134 ~GG~ag-lvL~er~wlgnk--~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~f  207 (846)
T KOG2066|consen  134 SGGMAG-LVLSERNWLGNK--DSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELF  207 (846)
T ss_pred             ecCcce-EEEehhhhhcCc--cceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccC
Confidence            999988 777764322211  122455667899999996  67788777776 999999988877655443211    12


Q ss_pred             ceeeEEeCCCcEEEEeCCCCcEEEEEcC
Q 026679          147 NTEATFTPDGQYVVSGSGDGTLHAWNIN  174 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~~dg~i~v~d~~  174 (235)
                      ...+.|.++.+ |+.|=.| +|+|..++
T Consensus       208 pphl~W~~~~~-LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  208 PPHLHWQDEDR-LVIGWGD-SVKICSIK  233 (846)
T ss_pred             CCceEecCCCe-EEEecCC-eEEEEEEe
Confidence            33477776654 4455444 68888887

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.91  E-value=4.6e-07  Score=69.73  Aligned_cols=181  Identities=12%  Similarity=0.058  Sum_probs=108.4

Q ss_pred             CCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcC--CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcc
Q 026679           25 VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE  102 (235)
Q Consensus        25 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  102 (235)
                      ++..++.++.++.+..+|.++|+.+..........  -+|  .+..++.+..+|.+..+|.++++.    ..........
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~--~~p~v~~~~v~v~~~~g~l~a~d~~tG~~----~W~~~~~~~~  177 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVL--SPPLVANGLVVVRTNDGRLTALDAATGER----LWTYSRVTPA  177 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceee--cCCEEECCEEEEECCCCeEEEEEcCCCce----eeEEccCCCc
Confidence            45678888889999999999998877665443211  111  345677788899999999988764    2111111111


Q ss_pred             e-----eEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC--Ccc---eeeEEeC--CCcEEEEeCCCCcEEE
Q 026679          103 V-----CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP--NTN---TEATFTP--DGQYVVSGSGDGTLHA  170 (235)
Q Consensus       103 v-----~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~i---~~~~~~~--~~~~l~~~~~dg~i~v  170 (235)
                      .     .....  .+..++.+..++.+..+|.++++...........  ..+   ..+.-+|  .+..+++++.+|.++.
T Consensus       178 ~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a  255 (377)
T TIGR03300       178 LTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA  255 (377)
T ss_pred             eeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence            0     11111  1246778888999999999998876543322110  000   0011111  3557778888999999


Q ss_pred             EEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          171 WNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      ||..+++.+-.....  .......  .+..++.++  +.+..+|..+++
T Consensus       256 ~d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       256 LDLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             EECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCc
Confidence            999999876555421  1122222  233444433  778888886553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.91  E-value=1.7e-08  Score=70.16  Aligned_cols=201  Identities=13%  Similarity=0.187  Sum_probs=115.4

Q ss_pred             hhccccc-ceeEEEeecCCCeeEEEeccceEEEEecCcceee------------eeeeccC--CceEEEcCCCCEEEEEe
Q 026679            9 YFKGHKE-RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ------------GILRLRG--RPTVAFDQQGLVFAVAM   73 (235)
Q Consensus         9 ~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~------------~~~~~~~--~~~~~~~~~~~~l~~~~   73 (235)
                      ++.+|.+ .|+.+.++. .-.|+++..++.+.......+.+.            +.+..+.  .+.-+.+-.+..++++.
T Consensus        30 ~i~~~~d~~~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~  108 (319)
T KOG4714|consen   30 EIMQHADVKLSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGY  108 (319)
T ss_pred             hcccccceEEEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecC
Confidence            3344443 255555553 235666666666655554333222            2222222  22233444567799999


Q ss_pred             cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-----CCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679           74 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-----NNNIYVLDAYGGEKRCGFSLEPSPNTNT  148 (235)
Q Consensus        74 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~i~  148 (235)
                      .||.+.+++.+....  . ..........-.+.+....++.+.++.-     -+..+.|+++..+........  ...+.
T Consensus       109 ~dg~~~v~s~~~~~~--~-~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~--~~~v~  183 (319)
T KOG4714|consen  109 ADGSLAVFSTDKDLA--L-MSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA--LDAVT  183 (319)
T ss_pred             CCceEEEEechHHHh--h-hhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc--cccch
Confidence            999999999876211  0 0000000111112223334444443321     234666666544433222211  23388


Q ss_pred             eeEEeCC-CcEEEEeCCCCcEEEEEcCCCce-eeeecCCCcceeEEEeec-CCCEEEEcc--cceEEeeCCC
Q 026679          149 EATFTPD-GQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAP-RRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       149 ~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~~i~iw~~~~  215 (235)
                      +++-+|. .+.+++|+.||.+-+||.++... ...++.|+.+|+.+.|+| ++..|.+++  |.+-.||-.+
T Consensus       184 ~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  184 ALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            8999995 55678889999999999998743 445678999999999999 566777777  6777777664

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.88  E-value=7.9e-07  Score=68.43  Aligned_cols=149  Identities=17%  Similarity=0.169  Sum_probs=97.6

Q ss_pred             CCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeE
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD  105 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~  105 (235)
                      +..++.++.++.+..+|..+|+.+...............++..+++++.+|.+..+|..+++.    ...... ...+.+
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~----~W~~~~-~~~~~~  139 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKE----LWRAKL-SSEVLS  139 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcE----eeeecc-Cceeec
Confidence            567888889999999999999988776655432211122567888889999999999988764    211111 112211


Q ss_pred             EEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc---ceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee
Q 026679          106 IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT---NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW  182 (235)
Q Consensus       106 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  182 (235)
                      .-.. .+..++.++.++.++.+|.++++.+-.+........   .......  +..++.+..+|.+..+|.++|+.+-..
T Consensus       140 ~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       140 PPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             CCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence            1111 345677888899999999999987766554322100   0111221  246778888999999999999876543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.88  E-value=1.2e-06  Score=62.82  Aligned_cols=145  Identities=18%  Similarity=0.183  Sum_probs=96.4

Q ss_pred             cceEEEEecCcceeeeeeeccC-CceEE--EcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC
Q 026679           35 DHSVRIWDLRVNACQGILRLRG-RPTVA--FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND  111 (235)
Q Consensus        35 d~~i~vwd~~~~~~~~~~~~~~-~~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  111 (235)
                      +|+|..||..+++.+....... .....  ..+++..+++++.++.+..||..+++.  ......   ...+.... ..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~--~W~~~~---~~~~~~~~-~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKV--LWRFDL---PGPISGAP-VVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEE--EEEEEC---SSCGGSGE-EEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCE--EEEeec---ccccccee-eec
Confidence            6889999999999888887633 22222  344677788888999999999988764  112222   11111111 224


Q ss_pred             CCeEEEecCCCcEEEEEcCCCceeeee-ccCCCC-CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC
Q 026679          112 GKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN  185 (235)
Q Consensus       112 ~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  185 (235)
                      +..+++++.++.++.+|..+++..... ...... ..........++..++++..++.|..+|.++|+.+......
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~  151 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG  151 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence            556777778889999999999988773 322111 11222334445788888888999999999999998777553

...

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.85  E-value=1.1e-06  Score=68.18  Aligned_cols=91  Identities=18%  Similarity=0.261  Sum_probs=67.7

Q ss_pred             EEEEEcCCCcee--eeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEE
Q 026679          124 IYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF  201 (235)
Q Consensus       124 i~~~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  201 (235)
                      -.+|++..++..  ..... ..+..+.+++++|+...|+.|+.||.|.+||...+...  +....-.++.++|+|+|.++
T Consensus       238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~  314 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIF  314 (545)
T ss_pred             EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEE
Confidence            345666544322  22222 33466899999999999999999999999998766433  22345678899999999999


Q ss_pred             EEcc--cceEEeeCCCCC
Q 026679          202 VAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       202 ~~~~--~~i~iw~~~~~~  217 (235)
                      ++|+  |.+.+||+.-..
T Consensus       315 ~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  315 VVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEcCCceEEEEEeecCc
Confidence            9998  889999986543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.84  E-value=1.5e-06  Score=72.46  Aligned_cols=198  Identities=11%  Similarity=0.169  Sum_probs=128.9

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec-cCCceEEEcCCCCEEEEEecCCeEEEEec----cCCCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDS----RSYDK   88 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~v~i~d~----~~~~~   88 (235)
                      ...|.++.|..+...++.+..+|.|.+-|.++......-.. .++.+++|+||++.++..+..+++.+-+-    -..+.
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            35899999999988888888899999998877654433333 33556999999999999988887766332    10000


Q ss_pred             C--------Cce-------eEeecC---------------------CCcceeEEEEccCCCeEEEec-----CCCcEEEE
Q 026679           89 G--------PFD-------TFLVGG---------------------DTAEVCDIKFSNDGKSMLLTT-----TNNNIYVL  127 (235)
Q Consensus        89 ~--------~~~-------~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~-----~d~~i~~~  127 (235)
                      .        ...       ...+.+                     ....=+.+.|--||+++++..     ....|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence            0        000       000000                     111223588999999988832     23789999


Q ss_pred             EcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe---CCCCcEEEEEcCCCceeee----ecCCCcceeEEEeecCCCE
Q 026679          128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG---SGDGTLHAWNINTRNEVAC----WNGNIGVVACLKWAPRRAM  200 (235)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~v~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~  200 (235)
                      |-. +..-..-.  ...+.-.+++|-|.|.++++-   +.|+.|.+|.- +|..-..    +.....++..++|+.++..
T Consensus       228 drE-g~Lns~se--~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdi  303 (1265)
T KOG1920|consen  228 DRE-GALNSTSE--PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDI  303 (1265)
T ss_pred             ccc-chhhcccC--cccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCc
Confidence            965 44332211  222334669999999999875   34667999985 4433222    2333345999999999999


Q ss_pred             EEE---cc-cc-eEEeeCCC
Q 026679          201 FVA---AS-SV-LSFWIPNP  215 (235)
Q Consensus       201 l~~---~~-~~-i~iw~~~~  215 (235)
                      |+.   .. +. +++|-+..
T Consensus       304 LAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  304 LAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             eeeeecccccceEEEEEecC
Confidence            988   33 44 99997654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.82  E-value=1.3e-07  Score=74.40  Aligned_cols=119  Identities=13%  Similarity=0.215  Sum_probs=89.5

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee--ccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR--LRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      |...|.--+++..+++++.|+.-|.+++|+-..+.....-.  .+...+ ..++++..++|+|+..|.|.++-+......
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            44455555667778999999999999999966554433322  223333 778999999999999999999998875443


Q ss_pred             CceeEee--cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC
Q 026679           90 PFDTFLV--GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG  131 (235)
Q Consensus        90 ~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~  131 (235)
                      .......  ..|...|++++|++++..+++|...|.|.+-.+..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            3322221  23567899999999999999999999999988876

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.80  E-value=3.1e-08  Score=49.46  Aligned_cols=36  Identities=22%  Similarity=0.354  Sum_probs=33.5

Q ss_pred             eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEE
Q 026679           93 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD  128 (235)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  128 (235)
                      ...+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            456778999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=1.1e-06  Score=70.71  Aligned_cols=181  Identities=14%  Similarity=0.215  Sum_probs=116.8

Q ss_pred             hhhhhcccccc-eeEEEeecCCCeeEEEeccc-----eEEEEecCcc------eee---eeee--cc----CCceEEEcC
Q 026679            6 ILRYFKGHKER-VISLCMSPVNDSFMSGSLDH-----SVRIWDLRVN------ACQ---GILR--LR----GRPTVAFDQ   64 (235)
Q Consensus         6 ~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~------~~~---~~~~--~~----~~~~~~~~~   64 (235)
                      .++.|+++... |..+....+..+|++.+.|+     .++||+++.-      .++   ..+.  .+    ...+++++.
T Consensus        56 ~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~  135 (933)
T KOG2114|consen   56 LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE  135 (933)
T ss_pred             eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc
Confidence            34677887777 55544443346788877765     4899998632      222   1111  11    123488999


Q ss_pred             CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC
Q 026679           65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP  144 (235)
Q Consensus        65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  144 (235)
                      +-+.+++|-.+|.|..+.-.-.........-......+|+.+++..++..++.......|.+|.+.... ........+.
T Consensus       136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G  214 (933)
T KOG2114|consen  136 DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNG  214 (933)
T ss_pred             cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cceeeeccCC
Confidence            999999999999999985322111111222333456799999999988875555556679999998444 3333355566


Q ss_pred             CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-CCCcc
Q 026679          145 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGV  188 (235)
Q Consensus       145 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~  188 (235)
                      ....|..+++....+++++.. .+.+||.....+-..+. +|...
T Consensus       215 ~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~  258 (933)
T KOG2114|consen  215 ISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKE  258 (933)
T ss_pred             ccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeEE
Confidence            778888898866545555544 59999987666666666 55443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.79  E-value=2.6e-06  Score=67.63  Aligned_cols=181  Identities=12%  Similarity=0.043  Sum_probs=110.0

Q ss_pred             eecCCCeeE-EEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEec-------------------------
Q 026679           22 MSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAME-------------------------   74 (235)
Q Consensus        22 ~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~-------------------------   74 (235)
                      ++|||+.+. +.-..+.+.+.|.++.+....+...... .++++|+|+++++.+.                         
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            345565443 2233466777787777766666655544 3788888888777751                         


Q ss_pred             ---------------CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCCCce----
Q 026679           75 ---------------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEK----  134 (235)
Q Consensus        75 ---------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~----  134 (235)
                                     ++.|.+.|..+.............-......+.++|||+++++++. +.++.++|+.+.+.    
T Consensus       280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~  359 (635)
T PRK02888        280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG  359 (635)
T ss_pred             HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence                           2346666655410000012222223456678999999999887765 88999999987553    


Q ss_pred             --------eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC----------CceeeeecCCCcce-----eE
Q 026679          135 --------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT----------RNEVACWNGNIGVV-----AC  191 (235)
Q Consensus       135 --------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~----------~~~~~~~~~~~~~v-----~~  191 (235)
                              ......  ..+ ....+|+++|+...+-..|..|..|++..          ...+..+..|-.+-     .+
T Consensus       360 ~~~~~~~vvaevev--GlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g  436 (635)
T PRK02888        360 KIKPRDAVVAEPEL--GLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMG  436 (635)
T ss_pred             cCCccceEEEeecc--CCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCC
Confidence                    222222  112 34578999998888888899999999875          22333333332211     11


Q ss_pred             EEeecCCCEEEEcc
Q 026679          192 LKWAPRRAMFVAAS  205 (235)
Q Consensus       192 ~~~~~~~~~l~~~~  205 (235)
                      =.-.|+|++|++..
T Consensus       437 ~t~~~dgk~l~~~n  450 (635)
T PRK02888        437 ETKEADGKWLVSLN  450 (635)
T ss_pred             CcCCCCCCEEEEcc
Confidence            12357888888775

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.76  E-value=1.6e-07  Score=72.56  Aligned_cols=72  Identities=25%  Similarity=0.375  Sum_probs=60.0

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEecCCeEEEEeccC
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      ....|.|++++|+.+.|+.|+.||+|.+||...+..... +..-.+ .++|+|+|..+++|+..|.+.+||+.-
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            567899999999999999999999999999876643333 333333 399999999999999999999999865

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.72  E-value=6.9e-09  Score=80.52  Aligned_cols=197  Identities=17%  Similarity=0.211  Sum_probs=127.3

Q ss_pred             ccceeEEEeecCC--CeeEEEeccceEEEEecCcceee--eeeeccCCce--EEEcC-CCCEEEEEe----cCCeEEEEe
Q 026679           14 KERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVNACQ--GILRLRGRPT--VAFDQ-QGLVFAVAM----EAGAIKLFD   82 (235)
Q Consensus        14 ~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~~--~~~~~-~~~~l~~~~----~dg~v~i~d   82 (235)
                      ...+.|+++.-+.  ..++.|..+|.|-+-.++...-.  ...+.+...|  ++|++ |.+.||+|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            4567888876644  46889999999999887655332  2223333333  88888 567777774    367899999


Q ss_pred             ccCCCCCCceeEeecC-CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEE
Q 026679           83 SRSYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVV  160 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~  160 (235)
                      +.+.-..|.....+.. ......+++|..+.+.+++|.....+.++|++....... ....  ..+..+..+| .+.+++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svnT--k~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNT--KYVQGITVDPFSPNYFC  212 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhhh--hhcccceecCCCCCcee
Confidence            9876322222222222 334456888988889999999999999999984322111 1111  2356678888 777877


Q ss_pred             EeCCCCcEEEEE-cCCCc-eeeeecCCC----cceeEEEeecCCCE-EEEcc---cceEEeeCC
Q 026679          161 SGSGDGTLHAWN-INTRN-EVACWNGNI----GVVACLKWAPRRAM-FVAAS---SVLSFWIPN  214 (235)
Q Consensus       161 ~~~~dg~i~v~d-~~~~~-~~~~~~~~~----~~v~~~~~~~~~~~-l~~~~---~~i~iw~~~  214 (235)
                      +-. ||.|.+|| .++-+ ++..+...+    ..+..++|.|...- +++..   ++|+.|++.
T Consensus       213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            665 99999999 44333 233332222    24899999996543 33333   678888875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.70  E-value=2.6e-06  Score=66.16  Aligned_cols=176  Identities=13%  Similarity=0.117  Sum_probs=94.2

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEE-eccCCCCCCc
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF-DSRSYDKGPF   91 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~-d~~~~~~~~~   91 (235)
                      ..-....+.++|+|+.++.+ .||.-.|+.....+...   .......+|.+.+ .+|+-...+.|.++ ++.+...   
T Consensus        31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~---~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~---  102 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA---FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV---  102 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE---EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT---
T ss_pred             CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc---cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc---
Confidence            33457889999999988885 56777788743332221   2233458888844 57777778899996 3433221   


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW  171 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  171 (235)
                      ......   ..+..+-.   |..|...+.+ .|.+||..+++.+..+...    +|..+.|+++|++++..+.+ .+.++
T Consensus       103 k~i~~~---~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t~~-~i~il  170 (443)
T PF04053_consen  103 KSIKLP---FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVTKD-SIYIL  170 (443)
T ss_dssp             -----S---S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred             eEEcCC---cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEeCC-eEEEE
Confidence            111111   12333322   7766666544 8999999999999877654    27889999999999998866 57777


Q ss_pred             EcCCC-----------ceeeeecCCCcceeEEEeecCCCEEEEcccceE
Q 026679          172 NINTR-----------NEVACWNGNIGVVACLKWAPRRAMFVAASSVLS  209 (235)
Q Consensus       172 d~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~  209 (235)
                      +....           .....+..-...|.+..|..+ -++.+..+.++
T Consensus       171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~~lk  218 (443)
T PF04053_consen  171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSNHLK  218 (443)
T ss_dssp             EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TTEEE
T ss_pred             EecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCCeEE
Confidence            75322           022333222467888888876 44444444333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=4.8e-05  Score=58.58  Aligned_cols=194  Identities=16%  Similarity=0.178  Sum_probs=132.3

Q ss_pred             eEEEeecCCCe-eEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEec---CCeEEEEeccCCCCCCce
Q 026679           18 ISLCMSPVNDS-FMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAME---AGAIKLFDSRSYDKGPFD   92 (235)
Q Consensus        18 ~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~   92 (235)
                      ..++.++.+.. .+....+..|.+.|..+............+. ++++|+++.+.++..   ++.+.+.|..+...    
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~----  152 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV----  152 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE----
Confidence            35677777764 4555556899999988887777776655444 999999988777766   68888888877654    


Q ss_pred             eEeecCCCcceeEEEEccCCCeEEEec-CCCcEEEEEcCCCceeeeec----cCCCCCcceeeEEeCCCcEEEEeCCC--
Q 026679           93 TFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFS----LEPSPNTNTEATFTPDGQYVVSGSGD--  165 (235)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d--  165 (235)
                      .........+ ..++++|+|+.++... .++.|.+.|........ -.    .... .....+.++|+|.++......  
T Consensus       153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~  229 (381)
T COG3391         153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSG  229 (381)
T ss_pred             EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccC-CCCceEEECCCCCEEEEEeccCC
Confidence            2222222233 7899999999766655 68899999977665542 11    1111 223568999999977655443  


Q ss_pred             -CcEEEEEcCCCceeeeecCCCc-ceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679          166 -GTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN  218 (235)
Q Consensus       166 -g~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~  218 (235)
                       +.+...|..++.....-..-.. ....+..+|+|.++.+..   +.+.+.|..+...
T Consensus       230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence             5899999888776655221112 467789999999988884   5677777665443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.63  E-value=3e-06  Score=69.47  Aligned_cols=137  Identities=12%  Similarity=0.110  Sum_probs=96.6

Q ss_pred             eccceEEEEecCcceeeeeeeccCCc-eEEEcCC-------CCEEEEEecCCeEEEEeccCCCCCCce-eEeecCCCcce
Q 026679           33 SLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQ-------GLVFAVAMEAGAIKLFDSRSYDKGPFD-TFLVGGDTAEV  103 (235)
Q Consensus        33 ~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~-------~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~~~~~v  103 (235)
                      .....|+-.|++.|+.+..+..+... +..+.|+       ...-+.|-.+..+..||.+-....... ...........
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            34577889999999999999988754 5667664       345677888889999999864311110 11111233457


Q ss_pred             eEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679          104 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus       104 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  173 (235)
                      .|++-+.+| +||+|+.+|.|++||- .+.. ....+++-..+|..+..+.||++|++.+.. .|.+++.
T Consensus       581 s~~aTt~~G-~iavgs~~G~IRLyd~-~g~~-AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  581 SCFATTEDG-YIAVGSNKGDIRLYDR-LGKR-AKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             eEEEecCCc-eEEEEeCCCcEEeecc-cchh-hhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence            778777777 5999999999999994 4432 233344555789999999999999877644 5667775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.63  E-value=4.6e-07  Score=71.37  Aligned_cols=153  Identities=13%  Similarity=0.138  Sum_probs=105.1

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee--
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG--  137 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--  137 (235)
                      -+++..+++++.|+..|.+++|+-..+..   ...+..+..+.+.....+++..++|+|+..|.|.++-+....+...  
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~---~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEM---RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhh---hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence            56778899999999999999999776553   2233333455667778899999999999999999998876433211  


Q ss_pred             -ecc-CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc----eeeeecCCCcceeEEEeecCCCEEEEcccceEEe
Q 026679          138 -FSL-EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN----EVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW  211 (235)
Q Consensus       138 -~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw  211 (235)
                       ... ..|+..|++++|++++..+++|...|.|..-.+.+..    ....+..-.+.|-.+... ++.+|++..-...+.
T Consensus       116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~r~~Lc  194 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLTRCILC  194 (726)
T ss_pred             eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhhhhhee
Confidence             111 2256789999999999999999999999988886621    111222234566666654 344454444334445


Q ss_pred             eCCCC
Q 026679          212 IPNPS  216 (235)
Q Consensus       212 ~~~~~  216 (235)
                      +.+..
T Consensus       195 ~tE~e  199 (726)
T KOG3621|consen  195 QTEAE  199 (726)
T ss_pred             ecchh
Confidence            55443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.61  E-value=2.3e-06  Score=68.43  Aligned_cols=152  Identities=17%  Similarity=0.137  Sum_probs=113.1

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCC------------CCEEEEEecCCeEE
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQ------------GLVFAVAMEAGAIK   79 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~------------~~~l~~~~~dg~v~   79 (235)
                      ...-.++.|+|.| ++|-|+. ..|.+-|..+-+.++.+..|...+  +.|.|.            .-+++++...|.|.
T Consensus        15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            3446778999865 6776665 578899999999999988887544  777652            23577888899999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEcc---CC-CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN---DG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-  154 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-  154 (235)
                      +||......    ...+..+..++..++|-+   +. ..|++-.....+.+|+..+|+..-.+....  ....|+.+.| 
T Consensus        93 l~d~~~~s~----~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~--~iLs~f~~DPf  166 (1062)
T KOG1912|consen   93 LVDFVLASV----INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH--EILSCFRVDPF  166 (1062)
T ss_pred             EEEehhhhh----hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC--cceeeeeeCCC
Confidence            999987654    555667788899999976   34 467777778899999999999886655433  4466788888 


Q ss_pred             CCcEEEEeCCCCcEEEEEc
Q 026679          155 DGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus       155 ~~~~l~~~~~dg~i~v~d~  173 (235)
                      |.+.+..-+..|.+.+-+.
T Consensus       167 d~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  167 DSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             CcceEEEEccCceEEEEec
Confidence            6677777777777666654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.59  E-value=2.9e-05  Score=59.65  Aligned_cols=199  Identities=15%  Similarity=0.189  Sum_probs=111.3

Q ss_pred             hcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC----------CceEEEc-----CCC---CEEEE
Q 026679           10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG----------RPTVAFD-----QQG---LVFAV   71 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----------~~~~~~~-----~~~---~~l~~   71 (235)
                      ++...++|++++.|. =.++|.|..+|.+.|.|++....+..-....          ..++.|.     .|+   -.+++
T Consensus        82 ~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            445578999999984 4699999999999999998887666533222          1124443     233   46889


Q ss_pred             EecCCeEEEEeccCCCCCCce---eEeecCCCcceeEEE-EccC-C-------------------CeEEEecCCCcEEEE
Q 026679           72 AMEAGAIKLFDSRSYDKGPFD---TFLVGGDTAEVCDIK-FSND-G-------------------KSMLLTTTNNNIYVL  127 (235)
Q Consensus        72 ~~~dg~v~i~d~~~~~~~~~~---~~~~~~~~~~v~~~~-~~~~-~-------------------~~l~~~~~d~~i~~~  127 (235)
                      |...|.+.+|.+.-.......   ......+.+++..+. ++.+ |                   ..++....+..++++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            999999999987521111111   111123445555444 3222 1                   124444557789999


Q ss_pred             EcCCCceeeeeccCCCCCcceeeEEe-----CCCcEEEEeCCCCcEEEEEcCCCceeeeecCCC----cceeEEEeecCC
Q 026679          128 DAYGGEKRCGFSLEPSPNTNTEATFT-----PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI----GVVACLKWAPRR  198 (235)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----~~v~~~~~~~~~  198 (235)
                      ...+.+......  ........+.+-     ..+..|++-..+|.|++|.+...+.+..++.+.    ..+....++++|
T Consensus       241 ~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G  318 (395)
T PF08596_consen  241 KPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG  318 (395)
T ss_dssp             -TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred             eCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence            998877665444  222223344452     356778888899999999999999887776432    356677889999


Q ss_pred             CEEEEcc-cceEEe
Q 026679          199 AMFVAAS-SVLSFW  211 (235)
Q Consensus       199 ~~l~~~~-~~i~iw  211 (235)
                      ..++-.+ ..+.++
T Consensus       319 di~~~~gpsE~~l~  332 (395)
T PF08596_consen  319 DIFYWTGPSEIQLF  332 (395)
T ss_dssp             -EEEE-SSSEEEEE
T ss_pred             CEEEEeCcccEEEE
Confidence            9988877 443333

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.51  E-value=6.1e-08  Score=75.47  Aligned_cols=159  Identities=16%  Similarity=0.201  Sum_probs=102.8

Q ss_pred             hcccccceeEEEeec-CCCeeEEEe----ccceEEEEecCcc--eeeee--e---eccCCceEEEcCCCCEEEEEecCCe
Q 026679           10 FKGHKERVISLCMSP-VNDSFMSGS----LDHSVRIWDLRVN--ACQGI--L---RLRGRPTVAFDQQGLVFAVAMEAGA   77 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~-~~~~l~s~~----~d~~i~vwd~~~~--~~~~~--~---~~~~~~~~~~~~~~~~l~~~~~dg~   77 (235)
                      ..+|..+.++++|++ |.++||+|-    .|..+.|||+.++  .+...  +   ...+..+++|..+.+++.+|.....
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~  177 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS  177 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence            346778899999998 456777763    3567999999876  22221  1   1223446888888999999999999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEE-cCCCce-eeeecc--CCCCCcceeeEE
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLD-AYGGEK-RCGFSL--EPSPNTNTEATF  152 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d-~~~~~~-~~~~~~--~~~~~~i~~~~~  152 (235)
                      +.++|++....     ....-.+..+..+...| .+++++.-. ||.|.+|| .+.-+. +....-  ...+..+..++|
T Consensus       178 ~~ifdlRqs~~-----~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay  251 (783)
T KOG1008|consen  178 VHIFDLRQSLD-----SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY  251 (783)
T ss_pred             hhhhhhhhhhh-----hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe
Confidence            99999984332     11112234567778888 677766554 99999999 433221 211111  112234788999


Q ss_pred             eCCCc-EEEEe-CCCCcEEEEEcC
Q 026679          153 TPDGQ-YVVSG-SGDGTLHAWNIN  174 (235)
Q Consensus       153 ~~~~~-~l~~~-~~dg~i~v~d~~  174 (235)
                      +|... .+++. -..++|+.||+.
T Consensus       252 cPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  252 CPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ccCCcchhhhhccCcceEEEeccc
Confidence            99432 34444 445789999985

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.50  E-value=4.9e-05  Score=58.97  Aligned_cols=182  Identities=10%  Similarity=-0.008  Sum_probs=105.7

Q ss_pred             CCeeEEEeccceEEEEecCcceeeeeeeccCCce---EEEcC--CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCC
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT---VAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT  100 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  100 (235)
                      +..++.+..++.+..+|.++|+.+..........   ..-+|  .+..++.+..+|.+..+|..+++....  .......
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~--~~~~~~~  237 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQ--QRISQPT  237 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhhe--eccccCC
Confidence            3456677788999999999998887765432100   00112  234577778889999999887664211  1110000


Q ss_pred             --c---ceeEEEEcc--CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679          101 --A---EVCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus       101 --~---~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  173 (235)
                        .   ....+.-+|  .+..+++++.+|.+..+|..+++.+-......    ...+.  ..+..++.++.+|.+..+|.
T Consensus       238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~--~~~~~vy~~~~~g~l~ald~  311 (394)
T PRK11138        238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFA--VDGGRIYLVDQNDRVYALDT  311 (394)
T ss_pred             CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcE--EECCEEEEEcCCCeEEEEEC
Confidence              0   011111122  34567778889999999999998765443321    11222  24567788888999999999


Q ss_pred             CCCceeeeecCCC-cceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          174 NTRNEVACWNGNI-GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       174 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      .+++.+-...... ....+.... ++ .|+.++  |.+.+.|.++++
T Consensus       312 ~tG~~~W~~~~~~~~~~~sp~v~-~g-~l~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        312 RGGVELWSQSDLLHRLLTAPVLY-NG-YLVVGDSEGYLHWINREDGR  356 (394)
T ss_pred             CCCcEEEcccccCCCcccCCEEE-CC-EEEEEeCCCEEEEEECCCCC
Confidence            9988754332111 112222222 33 333343  777777776654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.49  E-value=0.00018  Score=53.30  Aligned_cols=198  Identities=14%  Similarity=0.155  Sum_probs=116.6

Q ss_pred             EEeecCCCeeEEE--eccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCcee-Eee
Q 026679           20 LCMSPVNDSFMSG--SLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT-FLV   96 (235)
Q Consensus        20 ~~~~~~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~   96 (235)
                      ++++.|+++++..  +--..|.|-|+..++.+..+..++...+--. ....|.+-|.||.+.-..+.......... ..+
T Consensus       100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F  178 (342)
T PF06433_consen  100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF  178 (342)
T ss_dssp             EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred             eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec-CCCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence            4566677665543  3345677777777777777765543222112 23458888899999988887443322111 111


Q ss_pred             cCCCcce-eEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccC----------CCCCcceeeEEeCCCcEEEEeC--
Q 026679           97 GGDTAEV-CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE----------PSPNTNTEATFTPDGQYVVSGS--  163 (235)
Q Consensus        97 ~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~--  163 (235)
                      .....++ ..-++...+..++..+.+|.|+-.|+............          -.++.-.-+++++..+.|++--  
T Consensus       179 ~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~  258 (342)
T PF06433_consen  179 DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ  258 (342)
T ss_dssp             STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred             CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence            1222222 23445555666777889999999998776533221111          0113344578887655554431  


Q ss_pred             -CCC-------cEEEEEcCCCceeeeecCCCcceeEEEeecCCC-EEEEcc---cceEEeeCCCCCCC
Q 026679          164 -GDG-------TLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPSSNS  219 (235)
Q Consensus       164 -~dg-------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~---~~i~iw~~~~~~~~  219 (235)
                       .++       .|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|++.+   +.+.+||..+++..
T Consensus       259 g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  259 GGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             --TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             CCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence             122       488999999999998873 35788999998765 554432   67999999876543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.49  E-value=0.00013  Score=56.70  Aligned_cols=197  Identities=14%  Similarity=0.180  Sum_probs=102.9

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee----ccCCc-e----EEEcCCCCEEEEEec
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR----LRGRP-T----VAFDQQGLVFAVAME   74 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~~~~-~----~~~~~~~~~l~~~~~   74 (235)
                      |+++..+.--.+.|.++.|+.+ ..|+....||.++++|+. |+....+.    ..... +    ..+..+|  ++.-..
T Consensus        70 G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~  145 (410)
T PF04841_consen   70 GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTG  145 (410)
T ss_pred             CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC--EEEECC
Confidence            4445554433378899999875 556677789999999985 33311111    01110 1    1112234  333334


Q ss_pred             CCeEEEEeccCCCCCCc-eeE-ee-------cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCC
Q 026679           75 AGAIKLFDSRSYDKGPF-DTF-LV-------GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN  145 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~-~~~-~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  145 (235)
                      ++.+.+.+  +...... ... ..       ...........++.+....+....++.+.+.+-...+.     .. ..+
T Consensus       146 ~~~~~~v~--n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-----i~-~~~  217 (410)
T PF04841_consen  146 NNRFYVVN--NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-----ID-SDG  217 (410)
T ss_pred             CCeEEEEe--CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-----cc-CCC
Confidence            44444332  2211100 000 00       00001000123444455555555556666454332211     11 125


Q ss_pred             cceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC-CcceeEEEeecCCCEEEEcccceEEee
Q 026679          146 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAASSVLSFWI  212 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~i~iw~  212 (235)
                      ++..++.||+|+++|.-..+|.+.+.+..-.+....+... ......+.|.-+...++.-...+.+..
T Consensus       218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg  285 (410)
T PF04841_consen  218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVG  285 (410)
T ss_pred             CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEEC
Confidence            6999999999999999999999999887655555555433 346678888876555444444444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.48  E-value=4.3e-06  Score=64.93  Aligned_cols=139  Identities=10%  Similarity=0.145  Sum_probs=82.3

Q ss_pred             ceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee
Q 026679           58 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG  137 (235)
Q Consensus        58 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  137 (235)
                      ..+.++|+|+.+++ +.+|.-.++......     ...    .+....++|.+.++ +++-...+.|.++.--+.+....
T Consensus        36 ~~ls~npngr~v~V-~g~geY~iyt~~~~r-----~k~----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   36 QSLSHNPNGRFVLV-CGDGEYEIYTALAWR-----NKA----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             SEEEE-TTSSEEEE-EETTEEEEEETTTTE-----EEE----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred             eeEEECCCCCEEEE-EcCCEEEEEEccCCc-----ccc----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceE
Confidence            34999999999888 567788888733211     111    24556788998554 67777788899974322222223


Q ss_pred             eccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679          138 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS  216 (235)
Q Consensus       138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~  216 (235)
                      +....   .+..+-.   |.+|+..+.+ .|.+||+.+++.+..+...  +|..+.|++++.+++..+ ..+.|++.+..
T Consensus       105 i~~~~---~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~  175 (443)
T PF04053_consen  105 IKLPF---SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLE  175 (443)
T ss_dssp             ---SS----EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred             EcCCc---ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence            33321   2333332   7877777655 7999999999999998743  489999999999999888 77888877543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.47  E-value=1.8e-05  Score=61.37  Aligned_cols=148  Identities=18%  Similarity=0.205  Sum_probs=93.3

Q ss_pred             EEEcCCCCEEEEEe---cC-CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CC--cEEEEEcCCC
Q 026679           60 VAFDQQGLVFAVAM---EA-GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN--NIYVLDAYGG  132 (235)
Q Consensus        60 ~~~~~~~~~l~~~~---~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~  132 (235)
                      .+|+|++..++...   .. ..+.++|+.++......  ..   ...-...+|+|||+.|+.... ||  .|+++|+..+
T Consensus       198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--~~---~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~  272 (425)
T COG0823         198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--NF---NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK  272 (425)
T ss_pred             cccCcCCCceEEEEEecCCCceEEEEeccCCccceee--cc---CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence            68899887765543   22 45888999887652222  22   233445689999998887654 44  4788888877


Q ss_pred             ceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CCc--EEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---c
Q 026679          133 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGT--LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---S  206 (235)
Q Consensus       133 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~  206 (235)
                      +..+...   ..+.-..-.|+|||++++..+. .|.  |.+++...... ..+......-..-.|+|||.+++..+   |
T Consensus       273 ~~~~Lt~---~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g  348 (425)
T COG0823         273 NLPRLTN---GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGG  348 (425)
T ss_pred             cceeccc---CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence            7443222   2222346789999999976654 343  66777655543 34433333333778999999998876   3


Q ss_pred             c--eEEeeCCCC
Q 026679          207 V--LSFWIPNPS  216 (235)
Q Consensus       207 ~--i~iw~~~~~  216 (235)
                      .  +.+.++...
T Consensus       349 ~~~i~~~~~~~~  360 (425)
T COG0823         349 QWDIDKNDLASG  360 (425)
T ss_pred             ceeeEEeccCCC
Confidence            3  555555433

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.47  E-value=5.3e-05  Score=60.45  Aligned_cols=185  Identities=15%  Similarity=0.084  Sum_probs=108.2

Q ss_pred             eEEEeccceEEEEecCcceeeeeeeccCC--------------------------------ceEEEc---CCCCEEEEEe
Q 026679           29 FMSGSLDHSVRIWDLRVNACQGILRLRGR--------------------------------PTVAFD---QQGLVFAVAM   73 (235)
Q Consensus        29 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--------------------------------~~~~~~---~~~~~l~~~~   73 (235)
                      |.||+..|.++|+-+.+++.+..+..-..                                +.+.+.   .||++++.-.
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find  148 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND  148 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence            78999999999999887776655432100                                001111   1566777665


Q ss_pred             c-CCeEEEEeccCCCCCCceeEe-----------ecCCCccee-----EEEEccCCCeEEEec-CCCcEEEEEcCCCcee
Q 026679           74 E-AGAIKLFDSRSYDKGPFDTFL-----------VGGDTAEVC-----DIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKR  135 (235)
Q Consensus        74 ~-dg~v~i~d~~~~~~~~~~~~~-----------~~~~~~~v~-----~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~  135 (235)
                      . +..+...++...+........           ...+...|.     .+=++|||+.+...+ ..+.+.+.|..+.+..
T Consensus       149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~  228 (635)
T PRK02888        149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA  228 (635)
T ss_pred             CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence            4 455555555544332111100           001111121     122345665443322 2456788888877766


Q ss_pred             eeeccCCCCCcceeeEEeCCCcEEEEeCC----------------------------------------CCcEEEEEcCC
Q 026679          136 CGFSLEPSPNTNTEATFTPDGQYVVSGSG----------------------------------------DGTLHAWNINT  175 (235)
Q Consensus       136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------------------------------------dg~i~v~d~~~  175 (235)
                      ........   ...+.++|+|+++++.+.                                        ++.|.+.|.++
T Consensus       229 ~qV~Vdgn---pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t  305 (635)
T PRK02888        229 WQVMVDGN---LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRK  305 (635)
T ss_pred             EEEEeCCC---cccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCc
Confidence            66555443   345788888888877651                                        23467777666


Q ss_pred             -----CceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCC
Q 026679          176 -----RNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS  217 (235)
Q Consensus       176 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~  217 (235)
                           .+.+..+. -......+.++|||+++++++   .++.|+|+...+
T Consensus       306 ~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        306 AANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             cccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence                 23333333 345678999999999999987   779999997644

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.46  E-value=9.2e-05  Score=57.44  Aligned_cols=173  Identities=18%  Similarity=0.120  Sum_probs=103.0

Q ss_pred             CeeEEEeccceEEEEecCcceeeeeeeccCCc---------eEEEcC--CCCEEEEEecCCeEEEEeccCCCCCCceeEe
Q 026679           27 DSFMSGSLDHSVRIWDLRVNACQGILRLRGRP---------TVAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL   95 (235)
Q Consensus        27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---------~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~   95 (235)
                      ..++.++.++.+...|.++++.+.........         .+..+|  .+..+++++.+|.+..+|..+++.    ...
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~----~W~  281 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI----VWK  281 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE----EEe
Confidence            35666777888998998888766554321100         011122  355677778899999999988764    111


Q ss_pred             ecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679           96 VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT  175 (235)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  175 (235)
                      ...  .....+.  ..+..++.++.+|.+..+|..+++.+-....... ........  .+..|+.++.+|.++++|..+
T Consensus       282 ~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t  354 (394)
T PRK11138        282 REY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYLVVGDSEGYLHWINRED  354 (394)
T ss_pred             ecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-CcccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence            110  1111122  2466788888999999999999876543322111 11122222  355778889999999999999


Q ss_pred             CceeeeecCCCcceeE-EEeecCCCEEEEcc--cceEEee
Q 026679          176 RNEVACWNGNIGVVAC-LKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       176 ~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      |+.+...+.....+.+ ..+ .+++ |+.++  |.+..++
T Consensus       355 G~~~~~~~~~~~~~~s~P~~-~~~~-l~v~t~~G~l~~~~  392 (394)
T PRK11138        355 GRFVAQQKVDSSGFLSEPVV-ADDK-LLIQARDGTVYAIT  392 (394)
T ss_pred             CCEEEEEEcCCCcceeCCEE-ECCE-EEEEeCCceEEEEe
Confidence            9988776543332322 222 2444 44443  6666554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.44  E-value=4.2e-05  Score=58.39  Aligned_cols=195  Identities=15%  Similarity=0.160  Sum_probs=108.0

Q ss_pred             ecCCCeeEEE---------eccceEEEEecCcceeeeeeec-cCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679           23 SPVNDSFMSG---------SLDHSVRIWDLRVNACQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD   92 (235)
Q Consensus        23 ~~~~~~l~s~---------~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~   92 (235)
                      |||+++++..         +..+.+.++|+++++....... .......|+|+|+.++... ++.|.+++..++..   .
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~---~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE---T   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE---E
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe---E
Confidence            5777776653         2346789999999876665554 3344599999999988885 57899998765432   1


Q ss_pred             eEeecCC----------------CcceeEEEEccCCCeEEEecCCC----------------------------------
Q 026679           93 TFLVGGD----------------TAEVCDIKFSNDGKSMLLTTTNN----------------------------------  122 (235)
Q Consensus        93 ~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~d~----------------------------------  122 (235)
                      .....+.                -..-..+-|+||+++|+....|.                                  
T Consensus        77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np  156 (353)
T PF00930_consen   77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP  156 (353)
T ss_dssp             ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred             EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence            1111110                12235688999999988754321                                  


Q ss_pred             --cEEEEEcCCCceeeeecc---CCCCCcceeeEEeCCCcEEEEe--CCC---CcEEEEEcCCCceeeeecC-CCc---c
Q 026679          123 --NIYVLDAYGGEKRCGFSL---EPSPNTNTEATFTPDGQYVVSG--SGD---GTLHAWNINTRNEVACWNG-NIG---V  188 (235)
Q Consensus       123 --~i~~~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~--~~d---g~i~v~d~~~~~~~~~~~~-~~~---~  188 (235)
                        .+.++|+.+++....-..   ......+..+.|.++++.|+..  ..+   -.+.++|..++........ ..+   .
T Consensus       157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~  236 (353)
T PF00930_consen  157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV  236 (353)
T ss_dssp             EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred             ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence              145556655543211111   1233557789999998844332  222   2366778877655333221 112   2


Q ss_pred             eeEEEee-cCCCEEEEcc-----cceEEeeCCCCCCCCC
Q 026679          189 VACLKWA-PRRAMFVAAS-----SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       189 v~~~~~~-~~~~~l~~~~-----~~i~iw~~~~~~~~~~  221 (235)
                      -....|. +++..++..+     ..|.+++.+++....+
T Consensus       237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l  275 (353)
T PF00930_consen  237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL  275 (353)
T ss_dssp             SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES
T ss_pred             ecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc
Confidence            2345554 6666555543     3366666666543333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=7.1e-07  Score=72.06  Aligned_cols=107  Identities=10%  Similarity=0.187  Sum_probs=87.7

Q ss_pred             eEEEEccCCCeEEEecC----CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCcee
Q 026679          104 CDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV  179 (235)
Q Consensus       104 ~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  179 (235)
                      +-..|+|...++++++-    .|.|.+|- .+|++......+-|   +++++|+|..-.|+.|-+-|.+.+|...+.+.-
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCceee
Confidence            44579998888887753    67888885 56765544444433   678999999888999999999999998877766


Q ss_pred             eeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          180 ACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       180 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      .....|..+|..+.|+|+|..++++.  |.+.+|.++
T Consensus        95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            66678999999999999999999998  889999886

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.42  E-value=0.00011  Score=62.00  Aligned_cols=163  Identities=17%  Similarity=0.245  Sum_probs=108.3

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEc----CCCcee
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA----YGGEKR  135 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~----~~~~~~  135 (235)
                      +.|..+.+.++.+...|.|.+-|..+...     -....-...|.+++|+||++.++..+..+++.+.+-    -..+.+
T Consensus        74 ~~fl~d~~~i~v~~~~G~iilvd~et~~~-----eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L  148 (1265)
T KOG1920|consen   74 VQFLADTNSICVITALGDIILVDPETLEL-----EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL  148 (1265)
T ss_pred             EEEecccceEEEEecCCcEEEEcccccce-----eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence            67777888999999999999998877542     233345578999999999999999988888766542    000100


Q ss_pred             -------------------eeeccCC-------------------CCCcceeeEEeCCCcEEEEe-----CCCCcEEEEE
Q 026679          136 -------------------CGFSLEP-------------------SPNTNTEATFTPDGQYVVSG-----SGDGTLHAWN  172 (235)
Q Consensus       136 -------------------~~~~~~~-------------------~~~~i~~~~~~~~~~~l~~~-----~~dg~i~v~d  172 (235)
                                         ..+....                   ....-+.+.|--||+++++.     .....|+|||
T Consensus       149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d  228 (1265)
T KOG1920|consen  149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD  228 (1265)
T ss_pred             ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence                               0111000                   00112348999999999873     3337899999


Q ss_pred             cCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCCCCCCCCCCC
Q 026679          173 INTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNSTDESTDPQA  228 (235)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~~~~~~~~~~  228 (235)
                      .. |..-..-....+.-.+++|-|.|..+++-.     ++|.++.-++-.-..+.-..|..
T Consensus       229 rE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d  288 (1265)
T KOG1920|consen  229 RE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD  288 (1265)
T ss_pred             cc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence            75 543333233334457899999999998874     55999988776555444444433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.40  E-value=7e-08  Score=77.99  Aligned_cols=186  Identities=15%  Similarity=0.106  Sum_probs=120.7

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEec-cc-eEEEEecCc-ceeeeeeeccCCceEEEcCCCCEEEEEecCCeE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSL-DH-SVRIWDLRV-NACQGILRLRGRPTVAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~-~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v   78 (235)
                      .+|.......+|..+|+-+.-+.+|..+++.+. .. -..+|++.. +...+.+.  +..++.|+.....-+.|......
T Consensus      1131 ~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~--ed~~vkFsn~~q~r~~gt~~d~a 1208 (1516)
T KOG1832|consen 1131 SSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD--EDKAVKFSNSLQFRALGTEADDA 1208 (1516)
T ss_pred             cCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc--ccceeehhhhHHHHHhcccccce
Confidence            356667778899999999999999987665543 22 466899854 33333332  34567777765555566666789


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      .+||+++...-.............-+...|+|+..+++   .||  .+||++..+.++.|.--..   -..-.|+|.|..
T Consensus      1209 ~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~---~~~G~FHP~g~e 1280 (1516)
T KOG1832|consen 1209 LLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD---YGGGGFHPSGNE 1280 (1516)
T ss_pred             EEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee---cccccccCCCce
Confidence            99999986642111111111222336788999887665   344  5799998877665532211   123479999999


Q ss_pred             EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEc
Q 026679          159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA  204 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  204 (235)
                      ++.-+     .|||+++.+.++....-.  -..+.|+..|..+...
T Consensus      1281 VIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1281 VIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             EEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhh
Confidence            98876     489999998887765432  2456677766655443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.39  E-value=4.7e-06  Score=67.57  Aligned_cols=108  Identities=15%  Similarity=0.206  Sum_probs=84.7

Q ss_pred             eEEEeecCCCeeEEEec----cceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679           18 ISLCMSPVNDSFMSGSL----DHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD   92 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~   92 (235)
                      +-..|+|...+|+.++.    .|.|.||- ++|++......+- ..+++|+|..-.|+.|-.-|.+.+|...+.+.    
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~----   93 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET----   93 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee----
Confidence            34589999999887763    57888884 5666544332222 33499999999999999999999999877553    


Q ss_pred             eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC
Q 026679           93 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY  130 (235)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~  130 (235)
                      ......|+.++..+.|+|+|..++++..-|.+.+|...
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            44456788999999999999999999999999999764

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=0.00034  Score=54.00  Aligned_cols=180  Identities=17%  Similarity=0.190  Sum_probs=120.8

Q ss_pred             ceeEEEeecCCCeeEEEec---cceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEe-cCCeEEEEeccCCCCCC
Q 026679           16 RVISLCMSPVNDSFMSGSL---DHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGP   90 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~   90 (235)
                      .-..++++|+++.+..+..   ++++.+.|..+++..........+. ++++|+|+.++... .++.+.++|........
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~  196 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR  196 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence            3457889999877766654   6889999988888887765544344 99999999766665 78899999976654311


Q ss_pred             ceeEeecCCCcceeEEEEccCCCeEEEecCC---CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CC
Q 026679           91 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG  166 (235)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg  166 (235)
                      ...............+.++|+|.++.+....   +.+...|..++.....-...... ....+..+|+|+++.+... .+
T Consensus       197 ~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~  275 (381)
T COG3391         197 GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGG  275 (381)
T ss_pred             cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCC
Confidence            0000011122334568899999977666554   58999999888776542222222 3566899999999988744 58


Q ss_pred             cEEEEEcCCCceeeeecCCC---cceeEEEeec
Q 026679          167 TLHAWNINTRNEVACWNGNI---GVVACLKWAP  196 (235)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~---~~v~~~~~~~  196 (235)
                      .+.+.|..+...........   ..+..+++.+
T Consensus       276 ~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~  308 (381)
T COG3391         276 TVSVIDGATDRVVKTGPTGNEALGEPVSIAISP  308 (381)
T ss_pred             eEEEEeCCCCceeeeecccccccccceecccee
Confidence            89999988877766554322   2345555554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.39  E-value=0.00029  Score=50.51  Aligned_cols=199  Identities=11%  Similarity=0.112  Sum_probs=125.1

Q ss_pred             EEEeecCCC-eeEEEeccce-EEEEecCcceeeeeeeccCCce----EEEcCCCCEEEEEec-----CCeEEEEeccCCC
Q 026679           19 SLCMSPVND-SFMSGSLDHS-VRIWDLRVNACQGILRLRGRPT----VAFDQQGLVFAVAME-----AGAIKLFDSRSYD   87 (235)
Q Consensus        19 ~~~~~~~~~-~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~-----dg~v~i~d~~~~~   87 (235)
                      .++|+|... -++-+-.-|+ ..++|....+...++......-    -.|+|||.+|...-.     .|.|-+||.+..-
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            456666432 3444444443 4577777776666665544332    579999999988754     3789999998533


Q ss_pred             CCCceeEeecCCCcceeEEEEccCCCeEEEecC------------------CCcEEEEEcCCCceeeeeccC--CCCCcc
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------------------NNNIYVLDAYGGEKRCGFSLE--PSPNTN  147 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~~--~~~~~i  147 (235)
                      .   ..-.+..|.-....+.|.+||+.++.+..                  .-++.+.|..+++.+.+..+.  .+...+
T Consensus       152 q---rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi  228 (366)
T COG3490         152 Q---RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI  228 (366)
T ss_pred             c---eecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence            2   23334445555667889999998887643                  124677787788877766665  444668


Q ss_pred             eeeEEeCCCcEEEEeCCCCc-----EEEEEcCCCceeeeecC-------CCcceeEEEeecCCCEEEEcc---cceEEee
Q 026679          148 TEATFTPDGQYVVSGSGDGT-----LHAWNINTRNEVACWNG-------NIGVVACLKWAPRRAMFVAAS---SVLSFWI  212 (235)
Q Consensus       148 ~~~~~~~~~~~l~~~~~dg~-----i~v~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~---~~i~iw~  212 (235)
                      ..++..+||..++.+-..|.     -.+=-...++.+.-+..       ....|-+++.+.+..+++..+   +...+||
T Consensus       229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d  308 (366)
T COG3490         229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD  308 (366)
T ss_pred             eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence            88899888887665533221     11112223444433321       234577888887777777766   5589999


Q ss_pred             CCCCCCCC
Q 026679          213 PNPSSNST  220 (235)
Q Consensus       213 ~~~~~~~~  220 (235)
                      ..++.+..
T Consensus       309 a~tG~vv~  316 (366)
T COG3490         309 AATGAVVS  316 (366)
T ss_pred             cCCCcEEe
Confidence            98876543

>smart00320 WD40 WD40 repeats

Probab=98.39  E-value=3.1e-07  Score=45.19  Aligned_cols=39  Identities=33%  Similarity=0.632  Sum_probs=34.5

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEe
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD   42 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   42 (235)
                      ++++..+..|...|.++.|++++..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667788999999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.35  E-value=0.00039  Score=50.11  Aligned_cols=201  Identities=9%  Similarity=0.100  Sum_probs=130.8

Q ss_pred             hcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC---ceEEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679           10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR---PTVAFDQQGLVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~i~d~~~~   86 (235)
                      +.|-...|.++.|+|+.+.|++......-.|+=..+|+.+.++.....   ..+.+..++.+.++--.++.+.++.+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            344456699999999999888888888777887788999988876553   34888888888888888888888877654


Q ss_pred             CCC-Cc--eeEeec--CC-CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCC-------CCcceeeEE
Q 026679           87 DKG-PF--DTFLVG--GD-TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPS-------PNTNTEATF  152 (235)
Q Consensus        87 ~~~-~~--~~~~~~--~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~-------~~~i~~~~~  152 (235)
                      ... ..  ....+.  .+ +...-.++|.|....|+.+=+..-+.+|...... .........+       -..+.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            210 00  012221  12 4567789999988888888887777777765332 1110000000       134667888


Q ss_pred             eC-CCcEEEEeCCCCcEEEEEcCCCceeeeecCC---------CcceeEEEeecCCCEEEEcc-cceEEe
Q 026679          153 TP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGN---------IGVVACLKWAPRRAMFVAAS-SVLSFW  211 (235)
Q Consensus       153 ~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~-~~i~iw  211 (235)
                      ++ .+.+|+.+.+++.+.-.|. .|+.+..+.-+         -.....++..++|.+.+++- +-.+.+
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~F  309 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYRF  309 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCcceec
Confidence            87 5667778888888888886 45544443211         12345778888877666654 444433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=4.8e-06  Score=65.10  Aligned_cols=93  Identities=12%  Similarity=0.205  Sum_probs=75.3

Q ss_pred             cceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce-eeEEeCCCcEEEEeCCCCcEEEEEcCCCcee
Q 026679          101 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT-EATFTPDGQYVVSGSGDGTLHAWNINTRNEV  179 (235)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  179 (235)
                      ..+.-+.|+|.-..+|++..+|.|.+..+. .+.+..+..++.+  ++ +++|.|||++|++|-.||+|++-|..++..+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~--v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN--VTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCc--cceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            457788999999999999999999999887 5656566555443  44 9999999999999999999999999998887


Q ss_pred             eeec-CCCcceeEEEeec
Q 026679          180 ACWN-GNIGVVACLKWAP  196 (235)
Q Consensus       180 ~~~~-~~~~~v~~~~~~~  196 (235)
                      .... .....|.++-|.|
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            6632 2345788888864

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.31  E-value=0.00085  Score=52.52  Aligned_cols=195  Identities=13%  Similarity=0.100  Sum_probs=107.7

Q ss_pred             ceeEEEeecCCCeeEEE-ecc----ceEEEEecCcceeeeee-eccCCceEEEcCCCCEEEEEecCC-----------eE
Q 026679           16 RVISLCMSPVNDSFMSG-SLD----HSVRIWDLRVNACQGIL-RLRGRPTVAFDQQGLVFAVAMEAG-----------AI   78 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~-~~d----~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg-----------~v   78 (235)
                      .+....++|+|+++|.+ +..    ..++++|+++++.+... .......+.|.++++.|+....+.           .|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            34467899999987754 333    35999999999765532 333333399999988877665332           36


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC---C-CcEEEEEcCCC----ceeeeeccCCCCCcceee
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---N-NNIYVLDAYGG----EKRCGFSLEPSPNTNTEA  150 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-~~i~~~d~~~~----~~~~~~~~~~~~~~i~~~  150 (235)
                      ..|.+.+........+...........+..++|+++++....   + ..+++.|+..+    .....+.... .+....+
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~~~~v  283 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-DGVEYYV  283 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-SS-EEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-CceEEEE
Confidence            777776654322222222222222567889999998876433   3 45888888775    1222222211 1112223


Q ss_pred             EEeCCCcEEEEeC---CCCcEEEEEcCCCce---eeeecCCCc--ceeEEEeecCCCEEEEcc-----cceEEeeCC
Q 026679          151 TFTPDGQYVVSGS---GDGTLHAWNINTRNE---VACWNGNIG--VVACLKWAPRRAMFVAAS-----SVLSFWIPN  214 (235)
Q Consensus       151 ~~~~~~~~l~~~~---~dg~i~v~d~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~~-----~~i~iw~~~  214 (235)
                      ... .+.+++...   ..+.|...++.+...   ...+..+..  .+..+.  ..+.+|+...     ..|+++++.
T Consensus       284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEEEETT
T ss_pred             Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEEEECC
Confidence            333 444544443   246677778776653   224444544  344444  4455555543     458999988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.31  E-value=4.1e-05  Score=63.11  Aligned_cols=133  Identities=15%  Similarity=0.148  Sum_probs=88.6

Q ss_pred             cCCeEEEEeccCCCCCCceeEeecCCCc-ceeEEEEccC-------CCeEEEecCCCcEEEEEcCCCc-eeeeeccC--C
Q 026679           74 EAGAIKLFDSRSYDKGPFDTFLVGGDTA-EVCDIKFSND-------GKSMLLTTTNNNIYVLDAYGGE-KRCGFSLE--P  142 (235)
Q Consensus        74 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-------~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~--~  142 (235)
                      ....++-.|++.++.    ......+.. +|..  +.|+       ....+.|-.+..+..||.|-.. .+..-..+  .
T Consensus       502 ~~~~ly~mDLe~GKV----V~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~  575 (794)
T PF08553_consen  502 NPNKLYKMDLERGKV----VEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS  575 (794)
T ss_pred             CCCceEEEecCCCcE----EEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence            456788888888764    333333332 2443  3342       3346677888899999998643 11111111  1


Q ss_pred             CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeC
Q 026679          143 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIP  213 (235)
Q Consensus       143 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~  213 (235)
                      .....+|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|.+|..+.||++|++.+ ..+.+++.
T Consensus       576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            22446777777666 789999999999999543333445567778999999999999999888 56888876

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.27  E-value=0.00087  Score=51.25  Aligned_cols=187  Identities=17%  Similarity=0.164  Sum_probs=101.7

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc-------------------CCceEEEcCCCCEEEEEec
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-------------------GRPTVAFDQQGLVFAVAME   74 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~~~   74 (235)
                      ...+....|+|+|+.++-.. ++.|.+++..++...+.....                   ....+.|+||++.|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56788899999999988775 578999998776544332211                   1234889999999887643


Q ss_pred             C-Ce-----------------------------------EEEEeccCCCCCCceeE-eecCCCcceeEEEEccCCCeEEE
Q 026679           75 A-GA-----------------------------------IKLFDSRSYDKGPFDTF-LVGGDTAEVCDIKFSNDGKSMLL  117 (235)
Q Consensus        75 d-g~-----------------------------------v~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~  117 (235)
                      | ..                                   +.++|+.+++....... ........+..+.|.++++.|+.
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            2 22                                   22334433322100000 01123456778999999884444


Q ss_pred             ecC-----CCcEEEEEcCCCceeeeeccCCCCCcc---eeeEEe-CCC-cEEEEeCCCCc--EEEEEcCCCceeeeecCC
Q 026679          118 TTT-----NNNIYVLDAYGGEKRCGFSLEPSPNTN---TEATFT-PDG-QYVVSGSGDGT--LHAWNINTRNEVACWNGN  185 (235)
Q Consensus       118 ~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~i---~~~~~~-~~~-~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~  185 (235)
                      .-.     ...+.++|..++......... ....+   ....|. +++ .+|.....+|.  |++++...+. ...+...
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G  278 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSG  278 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-S
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccC
Confidence            332     223777888776554333221 11222   245554 554 44545556665  5555654454 3345444


Q ss_pred             CcceeE-EEeecCCCEEEE
Q 026679          186 IGVVAC-LKWAPRRAMFVA  203 (235)
Q Consensus       186 ~~~v~~-~~~~~~~~~l~~  203 (235)
                      .-.|.. +.|++++..|..
T Consensus       279 ~~~V~~i~~~d~~~~~iyf  297 (353)
T PF00930_consen  279 DWEVTSILGWDEDNNRIYF  297 (353)
T ss_dssp             SS-EEEEEEEECTSSEEEE
T ss_pred             ceeecccceEcCCCCEEEE
Confidence            456644 678888776543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.26  E-value=0.00022  Score=43.76  Aligned_cols=99  Identities=18%  Similarity=0.317  Sum_probs=62.7

Q ss_pred             eeEEEeec---CC-CeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679           17 VISLCMSP---VN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        17 v~~~~~~~---~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~   91 (235)
                      |++|++..   +| +.|+.|+.|..||+|+-  .+.+..+....... +.-.. +..|+.+..+|+|-+|+-.....   
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~-~~~F~Y~l~NGTVGvY~~~~RlW---   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLG-GGRFAYALANGTVGVYDRSQRLW---   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcC-CCEEEEEecCCEEEEEeCcceee---
Confidence            66777765   33 57999999999999973  35555555444333 33333 36799999999999998643221   


Q ss_pred             eeEeecCCCcceeEEEEcc-C--C-CeEEEecCCCcEE
Q 026679           92 DTFLVGGDTAEVCDIKFSN-D--G-KSMLLTTTNNNIY  125 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~d~~i~  125 (235)
                       ..+  . ...+.++++.. +  | ..|++|-.+|.|-
T Consensus        76 -RiK--S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 -RIK--S-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -eec--c-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             222  2 22355555433 3  2 2588888888764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=7.4e-05  Score=55.65  Aligned_cols=158  Identities=13%  Similarity=0.079  Sum_probs=88.9

Q ss_pred             EEEEecCcceeeeeeeccCCc--eEEEcCCCC-EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCC-C
Q 026679           38 VRIWDLRVNACQGILRLRGRP--TVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-K  113 (235)
Q Consensus        38 i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~  113 (235)
                      +++.+..+.+....+..++..  .++|+|..+ ++..++.+..|++.|+++...    ......+ ..+.+++|.-|. .
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~----vssy~a~-~~~wSC~wDlde~h  249 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV----VSSYIAY-NQIWSCCWDLDERH  249 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee----eeheecc-CCceeeeeccCCcc
Confidence            333333333333334444433  389999776 788999999999999998654    3333333 789999998765 4


Q ss_pred             eEEEecCCCcEEEEEcCCCcee-eeeccCCCCCcceeeE------EeCCCcEEEEeCCCCcEEEEEcCC--Cceeeeec-
Q 026679          114 SMLLTTTNNNIYVLDAYGGEKR-CGFSLEPSPNTNTEAT------FTPDGQYVVSGSGDGTLHAWNINT--RNEVACWN-  183 (235)
Q Consensus       114 ~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~------~~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~-  183 (235)
                      ++.+|..+|.|.+||++..+.. ..+.......+|..++      ..+.|.+|+....+  +..|++.-  +.....+. 
T Consensus       250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel  327 (463)
T KOG1645|consen  250 VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL  327 (463)
T ss_pred             eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc
Confidence            5677778999999999875432 2222212223343333      23345555554443  45565531  22222111 


Q ss_pred             CCCcceeEEEeecCCCEEE
Q 026679          184 GNIGVVACLKWAPRRAMFV  202 (235)
Q Consensus       184 ~~~~~v~~~~~~~~~~~l~  202 (235)
                      ...+...+++..+-.+.++
T Consensus       328 e~pG~cismqy~~~snh~l  346 (463)
T KOG1645|consen  328 EPPGICISMQYHGVSNHLL  346 (463)
T ss_pred             CCCcceeeeeecCccceEE
Confidence            1244555666655434333

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.23  E-value=0.00041  Score=56.27  Aligned_cols=172  Identities=13%  Similarity=0.161  Sum_probs=97.1

Q ss_pred             cceeEEEeecCCCeeEEEe------ccc--eEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecC-----------
Q 026679           15 ERVISLCMSPVNDSFMSGS------LDH--SVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEA-----------   75 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~------~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----------   75 (235)
                      ..+...+++|+|+.++...      .|.  .|.+++. .+...............|+|+|..+++....           
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            4678889999998876654      243  4555554 2333333344444558999998877776532           


Q ss_pred             -CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEE---EEcCCCceeee---eccCC-CCCcc
Q 026679           76 -GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV---LDAYGGEKRCG---FSLEP-SPNTN  147 (235)
Q Consensus        76 -g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~---~d~~~~~~~~~---~~~~~-~~~~i  147 (235)
                       +.+.+.++..+..    ..   .....|..+.|+|||..++... ++.|++   -....+. ...   ..+.. ....+
T Consensus       429 ~gql~~~~vd~ge~----~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        429 TGQLARTPVDASAV----AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTA  499 (591)
T ss_pred             CceEEEEeccCchh----hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCcc
Confidence             2222223332221    00   2245799999999999988866 467777   4433443 111   11111 22335


Q ss_pred             eeeEEeCCCcEEEEeCCCCcEEEEEcC-CCceeeeecC--CCcceeEEEeecC
Q 026679          148 TEATFTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNG--NIGVVACLKWAPR  197 (235)
Q Consensus       148 ~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~--~~~~v~~~~~~~~  197 (235)
                      ..+.|.+++.++ ++..++.-.+|.+. .|.....+..  ...++..++-++.
T Consensus       500 ~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~  551 (591)
T PRK13616        500 VSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS  551 (591)
T ss_pred             ccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence            789999999865 54444444455443 2332222232  2456777777764

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.18  E-value=0.00089  Score=47.47  Aligned_cols=123  Identities=18%  Similarity=0.155  Sum_probs=84.1

Q ss_pred             CCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCC
Q 026679           66 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN  145 (235)
Q Consensus        66 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  145 (235)
                      ..+++.|+..+.+..-|..+++.    ... ..-...+.+-+.- -|++++.|+..|.+++.+.++|.....+..... -
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~----~We-~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~-v   95 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNL----IWE-AILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET-V   95 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcE----Eee-hhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh-h
Confidence            45677788888888888887664    111 1111223222222 467899999999999999999987766654332 1


Q ss_pred             cceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeec
Q 026679          146 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP  196 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~  196 (235)
                      . ......+++..+..|+.|+..+..|.++..++...+...+...+-+..|
T Consensus        96 k-~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   96 K-VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             c-cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence            1 2245677999999999999999999999888877664444334444455

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=1.4e-05  Score=62.61  Aligned_cols=90  Identities=12%  Similarity=0.233  Sum_probs=69.5

Q ss_pred             eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCccee-EEEEccCCCeEEEecCCCcEEEEEcCCCceeee
Q 026679           59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC-DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG  137 (235)
Q Consensus        59 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  137 (235)
                      .+.|+|.-.++|.+..+|.+.+..+. .+.    .....-+...++ +++|.|||+.|++|-.||+|++.|+.++..+..
T Consensus        25 ~~ewnP~~dLiA~~t~~gelli~R~n-~qR----lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   25 RIEWNPKMDLIATRTEKGELLIHRLN-WQR----LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             EEEEcCccchhheeccCCcEEEEEec-cce----eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            38899999999999999999888776 221    333333455565 999999999999999999999999999988776


Q ss_pred             eccCCCCCcceeeEEeC
Q 026679          138 FSLEPSPNTNTEATFTP  154 (235)
Q Consensus       138 ~~~~~~~~~i~~~~~~~  154 (235)
                      +... ....|.++-|++
T Consensus       100 ~~~s-~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFS-VETDISKGIWDR  115 (665)
T ss_pred             cccc-cccchheeeccc
Confidence            4332 235577788864

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.12  E-value=0.0016  Score=48.38  Aligned_cols=172  Identities=17%  Similarity=0.190  Sum_probs=101.8

Q ss_pred             CCCeeEEEeccceEEEEecCcceeeeeeec-c-C-----CceEEEcCCCCEEEEEec-----------CCeEEEEeccCC
Q 026679           25 VNDSFMSGSLDHSVRIWDLRVNACQGILRL-R-G-----RPTVAFDQQGLVFAVAME-----------AGAIKLFDSRSY   86 (235)
Q Consensus        25 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~-~-----~~~~~~~~~~~~l~~~~~-----------dg~v~i~d~~~~   86 (235)
                      .+..|+++..  .+.+++.+++..+..+.. . .     .+-....|+|.+.+....           -|.++.+|. .+
T Consensus        76 ~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g  152 (307)
T COG3386          76 AGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG  152 (307)
T ss_pred             CCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC
Confidence            3445555432  356677665555322221 1 1     122778888887665544           133333443 22


Q ss_pred             CCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCC--Cc---eeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYG--GE---KRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~--~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      ..    ......+-..-+.++||||++.|+.+.. .+.|.-|++..  +.   ..........++..-.++...+|.+-+
T Consensus       153 ~~----~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~  228 (307)
T COG3386         153 GV----VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV  228 (307)
T ss_pred             CE----EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE
Confidence            11    2233333455678999999988777765 47888888752  11   111122222345566688888898886


Q ss_pred             EeCCCC-cEEEEEcCCCceeeeecCCCcceeEEEeec-CCCEEEEc
Q 026679          161 SGSGDG-TLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAA  204 (235)
Q Consensus       161 ~~~~dg-~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  204 (235)
                      ++..+| .|.+|+.. ++++..+..+...+++++|-- +.+.|...
T Consensus       229 ~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         229 AAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             ecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence            555554 89999987 999988887767888888864 44444433

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.07  E-value=0.0024  Score=48.23  Aligned_cols=173  Identities=14%  Similarity=0.134  Sum_probs=104.9

Q ss_pred             eEEEEecCcceeeeeeeccCCce------EEEcCC----CCEEEEEec---------C-CeEEEEeccCC-C-CCCceeE
Q 026679           37 SVRIWDLRVNACQGILRLRGRPT------VAFDQQ----GLVFAVAME---------A-GAIKLFDSRSY-D-KGPFDTF   94 (235)
Q Consensus        37 ~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~----~~~l~~~~~---------d-g~v~i~d~~~~-~-~~~~~~~   94 (235)
                      .|++.|..+.+.+..+.......      +.+..+    ..++++|..         . |.+.++++... . .......
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            57888888777777766554322      333332    467777753         2 89999999884 1 0112222


Q ss_pred             eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-eeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679           95 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  173 (235)
                      ......++|++++-- ++. |+++ .++.|.+|++...+ ....-..+.. ..+.++..  .++++++|.....+.++..
T Consensus        83 ~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~--~~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSV--FKNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEE--ETTEEEEEESSSSEEEEEE
T ss_pred             EEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecce-EEEEEEec--cccEEEEEEcccCEEEEEE
Confidence            233446788888766 344 4443 35789999998887 5544443332 24544444  4669999988888888765


Q ss_pred             CC-Cceeeeec--CCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          174 NT-RNEVACWN--GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       174 ~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      +. ...+..+.  .....++++.+-+++..++.++  |++.++..+.
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            43 22233332  2345688899987767777776  8888888764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.04  E-value=0.0024  Score=47.03  Aligned_cols=148  Identities=17%  Similarity=0.209  Sum_probs=88.5

Q ss_pred             cCCCeeEEEeccceEEEEec-CcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE--------
Q 026679           24 PVNDSFMSGSLDHSVRIWDL-RVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF--------   94 (235)
Q Consensus        24 ~~~~~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--------   94 (235)
                      ..++.|+.|..+| +.+++. .............+..+...|+-+.+++-+ |+.+.++++...........        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            3468899998888 899998 333444444444444477777666665554 49999999887654331110        


Q ss_pred             --eecCCCcceeEEE--EccCCCeEEEecCCCcEEEEEcCCC-----ceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679           95 --LVGGDTAEVCDIK--FSNDGKSMLLTTTNNNIYVLDAYGG-----EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus        95 --~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                        ........+..++  -.+.+...++......|.+|.....     +..+.+...   ..+..++|.  ++.++.|..+
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp---~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP---DPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC---CCcEEEEEe--CCEEEEEeCC
Confidence              0111223344444  1223444444555558888887653     344555544   457888888  5577777655


Q ss_pred             CcEEEEEcCCCcee
Q 026679          166 GTLHAWNINTRNEV  179 (235)
Q Consensus       166 g~i~v~d~~~~~~~  179 (235)
                      + ..+.|+.++...
T Consensus       158 ~-f~~idl~~~~~~  170 (275)
T PF00780_consen  158 G-FYLIDLNTGSPS  170 (275)
T ss_pred             c-eEEEecCCCCce
Confidence            4 677888765543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.02  E-value=0.0035  Score=48.94  Aligned_cols=185  Identities=12%  Similarity=0.124  Sum_probs=92.5

Q ss_pred             EEeecCCCeeEEEecc-----------ceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679           20 LCMSPVNDSFMSGSLD-----------HSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus        20 ~~~~~~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~   86 (235)
                      ++.+|.|..+|....+           ..|.||+. .|+.+..+.-.....  +.|..+ ..|++-..||.+++||+...
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence            4556666666655443           14888885 566666665554444  777764 45667779999999998643


Q ss_pred             CCCCceeEeecCCCcce-----eEEEEccCCCeEEEecCCCcEEEEEcCCCcee-eee-ccCCCC------Cccee-eEE
Q 026679           87 DKGPFDTFLVGGDTAEV-----CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR-CGF-SLEPSP------NTNTE-ATF  152 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~-~~~~~~------~~i~~-~~~  152 (235)
                      .  . ...........|     ....+..+|  ++.-..++.+.+..-...... ... ......      ..... ..+
T Consensus       112 ~--~-fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l  186 (410)
T PF04841_consen  112 F--Q-FSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL  186 (410)
T ss_pred             e--e-echhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence            2  0 000001111122     222333344  444445555555432222111 110 000000      00000 223


Q ss_pred             eCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      +.+....+....++.+.+.+-...+.   +. ..+++..|+.||++++++.-.  |.+.+...+.
T Consensus       187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  187 SSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF  247 (410)
T ss_pred             ecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence            44444444444455555444322211   22 236899999999999998776  5666665443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.99  E-value=0.00044  Score=53.27  Aligned_cols=151  Identities=17%  Similarity=0.186  Sum_probs=85.1

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeee-eeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCC-----
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG-ILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG-----   89 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-----   89 (235)
                      .|+.+.|+++...|+.|...|.|.+|.....+... .-.... .-..+.+-      ...++.-.+-|+......     
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~-~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~g   75 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPD-LDYNFRRF------SLNNSPGKLTDISDRAPPSLKEG   75 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--------GGGSS-SEEE-GGG--TT-SEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcc-cCcccccc------cccCCCcceEEehhhCCcccccc
Confidence            58899999998899999999999999876544332 000000 00111110      001112223343322111     


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC------CCCcceeeEEeC-----CC--
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP------SPNTNTEATFTP-----DG--  156 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~~i~~~~~~~-----~~--  156 (235)
                      -.....+....++|++++.+ |=.+++.|..+|.+.+.|+|....+..-....      ....++++.|+.     |+  
T Consensus        76 f~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   76 FLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             EEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             cCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence            11223344457899999997 45589999999999999999888776644333      335677888863     22  


Q ss_pred             -cEEEEeCCCCcEEEEEcC
Q 026679          157 -QYVVSGSGDGTLHAWNIN  174 (235)
Q Consensus       157 -~~l~~~~~dg~i~v~d~~  174 (235)
                       -.|++|+..|.+.+|.+.
T Consensus       155 Si~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEE
T ss_pred             ceEEEEEeCCCCEEEEEEe
Confidence             468899999999999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PHA02713 hypothetical protein; Provisional

Probab=97.99  E-value=0.0013  Score=53.40  Aligned_cols=194  Identities=7%  Similarity=-0.013  Sum_probs=98.0

Q ss_pred             CCCeeEEEecc------ceEEEEecCcceeee--eeeccCCceEEEcCCCCEEEEEecCC-----eEEEEeccCCCCCCc
Q 026679           25 VNDSFMSGSLD------HSVRIWDLRVNACQG--ILRLRGRPTVAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGPF   91 (235)
Q Consensus        25 ~~~~l~s~~~d------~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~   91 (235)
                      ++..++.||.+      ..+..||..++.-..  .+...........-++++.+.|+.++     .+..||..+......
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            34556666643      246677776653221  11111111123334778888888754     478899876543111


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCC-----------------------CcEEEEEcCCCceeeeeccCCCCCcce
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----------------------NNIYVLDAYGGEKRCGFSLEPSPNTNT  148 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------------~~i~~~d~~~~~~~~~~~~~~~~~~i~  148 (235)
                      ..  +.........+  .-++...+.|+.+                       ..+..||..+.+....-.+....... 
T Consensus       383 ~~--mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-  457 (557)
T PHA02713        383 PD--MPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-  457 (557)
T ss_pred             CC--CCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-
Confidence            11  11111111112  2256777777654                       24778898877654333322221111 


Q ss_pred             eeEEeCCCcEEEEeCCC------CcEEEEEcCC-Cce--eeeecCCCcceeEEEeecCCCEEEEcc--c--ceEEeeCCC
Q 026679          149 EATFTPDGQYVVSGSGD------GTLHAWNINT-RNE--VACWNGNIGVVACLKWAPRRAMFVAAS--S--VLSFWIPNP  215 (235)
Q Consensus       149 ~~~~~~~~~~l~~~~~d------g~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~i~iw~~~~  215 (235)
                       ....-+++..+.|+.+      ..+..||..+ .+-  +..+....... +++.. ++++.+.|+  +  ++..||+.+
T Consensus       458 -~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        458 -GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HTILH-DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             -cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-eeEEE-CCEEEEEeeecceeehhhcCccc
Confidence             1222356777777654      2467899876 333  33333222222 22222 667777776  3  588888877


Q ss_pred             CCCCCCCCCCC
Q 026679          216 SSNSTDESTDP  226 (235)
Q Consensus       216 ~~~~~~~~~~~  226 (235)
                      .+-..+.....
T Consensus       535 ~~W~~~~~~~~  545 (557)
T PHA02713        535 YEWNHICHQHS  545 (557)
T ss_pred             ccccchhhhcC
Confidence            76555544433

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.99  E-value=0.0032  Score=51.29  Aligned_cols=149  Identities=13%  Similarity=0.135  Sum_probs=84.9

Q ss_pred             ceEEEcCCCCEEEEEe------cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC----------
Q 026679           58 PTVAFDQQGLVFAVAM------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN----------  121 (235)
Q Consensus        58 ~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------  121 (235)
                      ...+++|+|+.++...      .|..-.+|-...... . ... ..+  .....-.|+|+|+.+++....          
T Consensus       353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~l-t~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQV-LEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eee-ecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            3488999999887766      244334443322221 1 111 222  237788999998877776533          


Q ss_pred             --CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEE---EEcCCCce-e---eee-cCCCcceeE
Q 026679          122 --NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA---WNINTRNE-V---ACW-NGNIGVVAC  191 (235)
Q Consensus       122 --~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v---~d~~~~~~-~---~~~-~~~~~~v~~  191 (235)
                        +.+.+.++..+....     .....|..+.|||||..++... +|.|++   -....|.. +   ..+ ..-...+.+
T Consensus       428 ~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        428 ATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             CCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence              233333443333221     1234599999999999987765 467777   44344541 1   112 122334688


Q ss_pred             EEeecCCCEEEEcc-cceEEe--eCCCCC
Q 026679          192 LKWAPRRAMFVAAS-SVLSFW--IPNPSS  217 (235)
Q Consensus       192 ~~~~~~~~~l~~~~-~~i~iw--~~~~~~  217 (235)
                      +.|.+++.+++... +.-.+|  ++++..
T Consensus       502 l~W~~~~~L~V~~~~~~~~v~~v~vDG~~  530 (591)
T PRK13616        502 LDWRTGDSLVVGRSDPEHPVWYVNLDGSN  530 (591)
T ss_pred             ceEecCCEEEEEecCCCCceEEEecCCcc
Confidence            99999998765544 434445  445443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.00029  Score=54.61  Aligned_cols=140  Identities=14%  Similarity=0.093  Sum_probs=88.5

Q ss_pred             EEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCC-------eEEEecCCCcEEEEEcCCCce--eeeec
Q 026679           69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-------SMLLTTTNNNIYVLDAYGGEK--RCGFS  139 (235)
Q Consensus        69 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~~~d~~~~~~--~~~~~  139 (235)
                      |..+.....++-.|++.++.    .-...-+.. |.-+.+.|+.+       .-+.|-.+..|.-||+|-...  +....
T Consensus       349 l~~~~~~~~l~klDIE~GKI----VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKI----VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             eeCCCCcCcceeeeccccee----eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            44455556677778877664    222222222 66666776543       234566788899999984332  11111


Q ss_pred             cCCC--CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCC
Q 026679          140 LEPS--PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPN  214 (235)
Q Consensus       140 ~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~  214 (235)
                      .+..  .....|.+-..+| ++++|+.+|.|++||--..+....+++...+|..+..+.+|.+|++.+ ..+.+.+..
T Consensus       424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             ccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            1111  1223444444444 899999999999999733334455677888999999999999998888 556666654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.97  E-value=0.0047  Score=49.46  Aligned_cols=155  Identities=12%  Similarity=0.088  Sum_probs=93.7

Q ss_pred             CCeeEEEeccceEEEEecCcceeeeeeeccCC------ce----EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEe
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGR------PT----VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL   95 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~------~~----~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~   95 (235)
                      +..++.++.++.+.-.|.++++.+..+.....      ..    ++.. ++..++.++.++.+..+|.++++..  ....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~--W~~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQV--WKFG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEe--eeec
Confidence            44677778889999999999988776654332      00    1111 2267888888999999999987751  1122


Q ss_pred             ecCCCcceeEEEEcc--CCCeEEEec---------CCCcEEEEEcCCCceeeeeccCCCCC------------------c
Q 026679           96 VGGDTAEVCDIKFSN--DGKSMLLTT---------TNNNIYVLDAYGGEKRCGFSLEPSPN------------------T  146 (235)
Q Consensus        96 ~~~~~~~v~~~~~~~--~~~~l~~~~---------~d~~i~~~d~~~~~~~~~~~~~~~~~------------------~  146 (235)
                      ...+...-..+.-+|  .+..++.++         .++.+..+|..+++..-.+.......                  .
T Consensus       138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            111100000011111  123455553         36789999999998877665432100                  0


Q ss_pred             -ceeeEEeCCCcEEEEeCCCC------------------cEEEEEcCCCceeeeec
Q 026679          147 -NTEATFTPDGQYVVSGSGDG------------------TLHAWNINTRNEVACWN  183 (235)
Q Consensus       147 -i~~~~~~~~~~~l~~~~~dg------------------~i~v~d~~~~~~~~~~~  183 (235)
                       -...++.+.+..++.++.++                  .|.-+|..+|+.+-.++
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~  273 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ  273 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence             01245555667777777665                  69999999999876654

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.97  E-value=0.0028  Score=50.75  Aligned_cols=155  Identities=14%  Similarity=0.157  Sum_probs=94.5

Q ss_pred             EeecCCCeeEEEeccc------------------eEEEEecCcceeeeeeeccCC----------ceEE-Ec-CCCC---
Q 026679           21 CMSPVNDSFMSGSLDH------------------SVRIWDLRVNACQGILRLRGR----------PTVA-FD-QQGL---   67 (235)
Q Consensus        21 ~~~~~~~~l~s~~~d~------------------~i~vwd~~~~~~~~~~~~~~~----------~~~~-~~-~~~~---   67 (235)
                      ++.+.+..++.++.++                  .|.-.|.++++....++....          +.+. .. -++.   
T Consensus       223 a~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~  302 (488)
T cd00216         223 TYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVP  302 (488)
T ss_pred             eEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeE
Confidence            3444456777776554                  788999999998877653211          1111 11 1333   


Q ss_pred             EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEe------------------cCCCcEEEEEc
Q 026679           68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT------------------TTNNNIYVLDA  129 (235)
Q Consensus        68 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~d~~i~~~d~  129 (235)
                      .+++++.+|.+..+|.++++..-  .....     ...++.+|  ..++.+                  ..+|.+.-.|+
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W--~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~  373 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLIS--ARPEV-----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP  373 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEee--EeEee-----ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence            57788899999999999987521  11111     11122333  223322                  24678999999


Q ss_pred             CCCceeeeeccCCCC------CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecC
Q 026679          130 YGGEKRCGFSLEPSP------NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG  184 (235)
Q Consensus       130 ~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  184 (235)
                      .+++.+-........      .+...-.....+..|++++.||.|+.+|.++|+.+-+.+.
T Consensus       374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            999877665543111      0111111112567888999999999999999999877753

The alignment model contains an 8-bladed beta-propeller.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.97  E-value=0.0036  Score=46.65  Aligned_cols=193  Identities=13%  Similarity=0.149  Sum_probs=104.8

Q ss_pred             EeecCCC-eeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCCC-CceeEeec
Q 026679           21 CMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG-PFDTFLVG   97 (235)
Q Consensus        21 ~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~   97 (235)
                      .|.++.. ++.+--..+.|.-|+..+++............ ......+. |+++..  .+.+++.++.... ........
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~-Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~  107 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR-LIACEH--GVRLLDPDTGGKITLLAEPEDG  107 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCe-EEEEcc--ccEEEeccCCceeEEeccccCC
Confidence            4566655 34444556778888876554333322233333 44444443 444332  3455555433220 00000001


Q ss_pred             CCCcceeEEEEccCCCeEEEecC-----------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-C
Q 026679           98 GDTAEVCDIKFSNDGKSMLLTTT-----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-D  165 (235)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d  165 (235)
                      ......+.....|+|.+.+....           -|.++.+|. .+.......  .+-...+.++||||++.|+.+.. .
T Consensus       108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~--~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD--DDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec--CcEEecCceEECCCCCEEEEEeCCC
Confidence            11234567888999886555433           134555554 344433322  22234577999999987776644 5


Q ss_pred             CcEEEEEcCC--Cce-----eeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCCCC
Q 026679          166 GTLHAWNINT--RNE-----VACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNS  219 (235)
Q Consensus       166 g~i~v~d~~~--~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~~  219 (235)
                      +.|+-|++..  +..     ...+....+..-.++...+|.+.+++.   +.+.+|+.+.....
T Consensus       185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~  248 (307)
T COG3386         185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLG  248 (307)
T ss_pred             CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEE
Confidence            7888887752  211     122223456677888888998886443   37999999855443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.96  E-value=0.0029  Score=45.49  Aligned_cols=180  Identities=15%  Similarity=0.184  Sum_probs=115.2

Q ss_pred             eeEEEeecCCCeeEEEeccc--eEEEEecCcceeeeeeeccCCce---EEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679           17 VISLCMSPVNDSFMSGSLDH--SVRIWDLRVNACQGILRLRGRPT---VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~   91 (235)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.+++.......+....   ++.. ++++....-.++...+||..+.+.  .
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~--~  123 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK--I  123 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE--E
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceE--E
Confidence            44677766777777777665  79999999998887776665322   4443 445566666789999999987653  2


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC---CcceeeEEeCCCcEEEEeCCCCcE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEATFTPDGQYVVSGSGDGTL  168 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i  168 (235)
                      ..+..   ...-..++  .|++.|+.......++.+|..+-+....+......   ..++.+.+- +|...|-.=....|
T Consensus       124 ~~~~y---~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I  197 (264)
T PF05096_consen  124 GTFPY---PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI  197 (264)
T ss_dssp             EEEE----SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEEec---CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence            22222   23445555  57788888888889999999887766665544332   235556665 67666666667778


Q ss_pred             EEEEcCCCceeeeecC------------C---CcceeEEEeecCCCEEEEcc
Q 026679          169 HAWNINTRNEVACWNG------------N---IGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       169 ~v~d~~~~~~~~~~~~------------~---~~~v~~~~~~~~~~~l~~~~  205 (235)
                      ...|..+|+.+..+..            .   ......|++.|....+...+
T Consensus       198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            8899999987665410            1   34678999999776666655

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=7.7e-05  Score=62.20  Aligned_cols=103  Identities=17%  Similarity=0.281  Sum_probs=76.1

Q ss_pred             CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCccee
Q 026679          111 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA  190 (235)
Q Consensus       111 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~  190 (235)
                      .+..++.|+..|.+-..|+... ...-.......++|++++|+.+|+.++.|-.+|.|.+||...++.++.+..|..+.+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            4557888999999999998653 111122333447899999999999999999999999999999999888876666555


Q ss_pred             EE---EeecCCCEEEEcccceEEeeCC
Q 026679          191 CL---KWAPRRAMFVAASSVLSFWIPN  214 (235)
Q Consensus       191 ~~---~~~~~~~~l~~~~~~i~iw~~~  214 (235)
                      ++   .+..++..+++++..-.+|.+.
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gsf~~lv  203 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGSFWKLV  203 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCceEEEE
Confidence            54   4445666788887333466653

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.95  E-value=0.0042  Score=46.92  Aligned_cols=143  Identities=13%  Similarity=0.148  Sum_probs=86.3

Q ss_pred             CCeeEEEec----------cceEEEEecCcc----eeee---eeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679           26 NDSFMSGSL----------DHSVRIWDLRVN----ACQG---ILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK   88 (235)
Q Consensus        26 ~~~l~s~~~----------d~~i~vwd~~~~----~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~   88 (235)
                      ..+|+.|..          .|.|.++++...    ..+.   .... ..++.++.+-+..++++. .+.+.+|++...+ 
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~-~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~-  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV-KGPVTAICSFNGRLVVAV-GNKLYVYDLDNSK-  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE-SS-EEEEEEETTEEEEEE-TTEEEEEEEETTS-
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee-cCcceEhhhhCCEEEEee-cCEEEEEEccCcc-
Confidence            356776643          289999999873    1222   2222 234444444344444443 4799999998866 


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC-CceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT  167 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  167 (235)
                       .............+.++...  ++++++|.....+.++.... ...+..+.....+..++++.|-++++.++.+..+|.
T Consensus       119 -~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn  195 (321)
T PF03178_consen  119 -TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN  195 (321)
T ss_dssp             -SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred             -cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence             12222222223355555544  66899999888888875543 332333333444566888999877679999999999


Q ss_pred             EEEEEcC
Q 026679          168 LHAWNIN  174 (235)
Q Consensus       168 i~v~d~~  174 (235)
                      +.++...
T Consensus       196 l~~l~~~  202 (321)
T PF03178_consen  196 LFVLRYN  202 (321)
T ss_dssp             EEEEEE-
T ss_pred             EEEEEEC
Confidence            9999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.95  E-value=0.0029  Score=44.99  Aligned_cols=137  Identities=12%  Similarity=0.013  Sum_probs=87.3

Q ss_pred             CCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCccee
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC  104 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~  104 (235)
                      ..+++.|+..+.+.--|..+|+......... ..+-+.- -|+.++.|+..|.+++.+.+++..    ...+.....--.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~----~w~f~~~~~vk~   97 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ----IWNFVILETVKV   97 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh----eeeeeehhhhcc
Confidence            3678889999999999999888765543322 1121111 567899999999999999999864    211111111112


Q ss_pred             EEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679          105 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH  169 (235)
Q Consensus       105 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  169 (235)
                      .....+++..+..++.|+..+..|.++...+...+..+.  ...+-+..|-...|..+...|.+.
T Consensus        98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen   98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVL  160 (354)
T ss_pred             ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEE
Confidence            345677899999999999999999999887766444332  233345555223333333444433

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.89  E-value=0.0037  Score=50.84  Aligned_cols=190  Identities=14%  Similarity=0.194  Sum_probs=104.6

Q ss_pred             EEEeecCCCeeEEEecc------ceEEEEecCcceeeeeeeccCCce-E-EEcCCCCEEEEEecCC-----eEEEEeccC
Q 026679           19 SLCMSPVNDSFMSGSLD------HSVRIWDLRVNACQGILRLRGRPT-V-AFDQQGLVFAVAMEAG-----AIKLFDSRS   85 (235)
Q Consensus        19 ~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~dg-----~v~i~d~~~   85 (235)
                      +++.. ++...++|+.|      .++..||..+++=...-....... . ...-+|.+.++|+.||     ++..||..+
T Consensus       327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~  405 (571)
T KOG4441|consen  327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT  405 (571)
T ss_pred             cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence            34444 35677888888      357778877665322222222222 2 2233788999999886     577788877


Q ss_pred             CCCCCceeEeecCCCcceeEEEE-ccCCCeEEEecCC------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKF-SNDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      .+........     ........ .-+|...++|+.+      .++..||..+++....-.+........ ++ .-++..
T Consensus       406 ~~W~~va~m~-----~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~i  478 (571)
T KOG4441|consen  406 NKWTPVAPML-----TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKI  478 (571)
T ss_pred             CcccccCCCC-----cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEE
Confidence            6642222111     11222222 2267777777754      357889988877665444433322222 22 236778


Q ss_pred             EEEeCCCCc-----EEEEEcCCCceeee--ecCCCcceeEEEeecCCCEEEEcc-------cceEEeeCCCCCC
Q 026679          159 VVSGSGDGT-----LHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSSN  218 (235)
Q Consensus       159 l~~~~~dg~-----i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~~  218 (235)
                      .+.|+.|+.     +..||..+.+....  +......+. ++. -++...+.|+       +++..||..+.+-
T Consensus       479 YvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g-~~~-~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  479 YVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG-VVV-LGGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             EEECCccCCCccceEEEEcCCCCceeEcccCcccccccc-EEE-ECCEEEEEecccCccccceeEEcCCCCCce
Confidence            888887763     77788876654332  222222221 222 2455555554       4588888776543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.85  E-value=0.0029  Score=46.56  Aligned_cols=148  Identities=14%  Similarity=0.066  Sum_probs=89.1

Q ss_pred             CCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec----
Q 026679           64 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS----  139 (235)
Q Consensus        64 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----  139 (235)
                      ..++.|+.|+.+| +.+++...... .  ..  ..+...|..+...|+-+.|++-+ |+.++++++..-.......    
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~-~--~~--i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSK-P--TR--ILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcc-c--ee--EeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence            4678899998888 89999833221 1  11  11223499999999877777665 4999999987654433110    


Q ss_pred             --------cCCCCCcceeeE--EeCCCcEEEEeCCCCcEEEEEcCCC-----ceeeeecCCCcceeEEEeecCCCEEEEc
Q 026679          140 --------LEPSPNTNTEAT--FTPDGQYVVSGSGDGTLHAWNINTR-----NEVACWNGNIGVVACLKWAPRRAMFVAA  204 (235)
Q Consensus       140 --------~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~  204 (235)
                              .-.....+...+  -.+.+...++......|.+|.....     +...++. -...+..++|.  +..++.+
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~  154 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVG  154 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEE
Confidence                    001111233333  1123333334444458888887653     3445554 34778999998  4566666


Q ss_pred             -ccceEEeeCCCCCCCCC
Q 026679          205 -SSVLSFWIPNPSSNSTD  221 (235)
Q Consensus       205 -~~~i~iw~~~~~~~~~~  221 (235)
                       .+...+.|+++.....+
T Consensus       155 ~~~~f~~idl~~~~~~~l  172 (275)
T PF00780_consen  155 TSKGFYLIDLNTGSPSEL  172 (275)
T ss_pred             eCCceEEEecCCCCceEE
Confidence             47789999986655544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.82  E-value=0.0042  Score=46.31  Aligned_cols=156  Identities=14%  Similarity=0.105  Sum_probs=95.9

Q ss_pred             CeeEEEeccceEEEEecC-cceeeeee----eccCCce---EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecC
Q 026679           27 DSFMSGSLDHSVRIWDLR-VNACQGIL----RLRGRPT---VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG   98 (235)
Q Consensus        27 ~~l~s~~~d~~i~vwd~~-~~~~~~~~----~~~~~~~---~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~   98 (235)
                      +.|.+-+.||.+.-..+. .|+.....    .....+.   -++...+..++.-+.+|.|+-.|+............+..
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            457888889999888887 34433221    1111222   344556667777889999999888775532211111110


Q ss_pred             --------CCcceeEEEEccCCCeEEEecCC----------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-EE
Q 026679           99 --------DTAEVCDIKFSNDGKSMLLTTTN----------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YV  159 (235)
Q Consensus        99 --------~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l  159 (235)
                              -.+.-.-+++++..+.|++....          ..|.++|+.+++.+..+.+.   .++.+++.+.+.+ +|
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L  304 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLL  304 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-EE
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---CccceEEEccCCCcEE
Confidence                    11233456777765555554321          24999999999999888875   2377899998766 45


Q ss_pred             EE-eCCCCcEEEEEcCCCceeeeecCC
Q 026679          160 VS-GSGDGTLHAWNINTRNEVACWNGN  185 (235)
Q Consensus       160 ~~-~~~dg~i~v~d~~~~~~~~~~~~~  185 (235)
                      ++ ...++.|.+||..+|+.+..+..-
T Consensus       305 ~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  305 YALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EEEETTTTEEEEEETTT--EEEEE---
T ss_pred             EEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            43 456899999999999999888643

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PHA03098 kelch-like protein; Provisional

Probab=97.81  E-value=0.01  Score=48.17  Aligned_cols=187  Identities=10%  Similarity=0.041  Sum_probs=91.4

Q ss_pred             CCCeeEEEeccc------eEEEEecCcceeeeeeecc--CCceEEEcCCCCEEEEEecC-----CeEEEEeccCCCCCCc
Q 026679           25 VNDSFMSGSLDH------SVRIWDLRVNACQGILRLR--GRPTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDKGPF   91 (235)
Q Consensus        25 ~~~~l~s~~~d~------~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~   91 (235)
                      ++..++.|+.++      .+..||..+++-...-...  ........-++.+++.|+.+     ..+..||..+......
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            345566666432      4667787665432221111  11112223367788888765     3577788776543211


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCC------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                      ....  ..... .+++ .-+++..+.|+.+      ..+..||..+++....-........ .+ +...+++.++.|+.+
T Consensus       374 ~~lp--~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~-~~~~~~~iyv~GG~~  447 (534)
T PHA03098        374 PPLI--FPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GC-AIYHDGKIYVIGGIS  447 (534)
T ss_pred             CCcC--cCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ce-EEEECCEEEEECCcc
Confidence            1111  11111 1122 2356666666632      4588999887665432222211111 11 223356677777643


Q ss_pred             C--------cEEEEEcCCCceeee--ecCCCcceeEEEeecCCCEEEEcc-------cceEEeeCCCCCCC
Q 026679          166 G--------TLHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSSNS  219 (235)
Q Consensus       166 g--------~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~~~  219 (235)
                      +        .+.+||..+.+-...  +...... .++. .-++..++.|+       +++.+||+++..-.
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             CCCCCcccceEEEecCCCCceeeCCCCCccccc-ceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence            2        388899876654322  1111111 1122 22666767765       25788888765433

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.79  E-value=0.0049  Score=50.18  Aligned_cols=189  Identities=13%  Similarity=0.129  Sum_probs=102.7

Q ss_pred             CCeeEEEeccc------eEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecC------CeEEEEeccCCCCCCc
Q 026679           26 NDSFMSGSLDH------SVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEA------GAIKLFDSRSYDKGPF   91 (235)
Q Consensus        26 ~~~l~s~~~d~------~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~   91 (235)
                      +.+++.|+.++      .+..+|..++.-.........  ......-++.+.++|+.+      ..+..||....+....
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            55677777763      677888877744333332222  222333456888899888      3677888887664332


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCCCc-----EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-----IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG  166 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  166 (235)
                      .......+...+..    -+|...++|+.||.     +-.||..+.+....-..........  .-.-+|+..++|+.++
T Consensus       365 a~M~~~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~g--v~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  365 APMNTKRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHG--VAVLGGKLYIIGGGDG  438 (571)
T ss_pred             CCccCccccceeEE----ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeE--EEEECCEEEEEcCcCC
Confidence            22222111222221    26778888888864     7888888766544333322111111  2223778888888654


Q ss_pred             ------cEEEEEcCCCceeeeecCCCcc-eeEEEeecCCCEEEEcc--c-----ceEEeeCCCCCCCCC
Q 026679          167 ------TLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAMFVAAS--S-----VLSFWIPNPSSNSTD  221 (235)
Q Consensus       167 ------~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~--~-----~i~iw~~~~~~~~~~  221 (235)
                            .+..||..+.+....-...... -..++. -++.+.+.|+  +     .+..||+.+.+-...
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence                  4778888766543222111111 111222 2556666665  2     277788876654433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.73  E-value=0.0038  Score=45.03  Aligned_cols=109  Identities=12%  Similarity=0.171  Sum_probs=78.0

Q ss_pred             eeEEEEccCC-CeEEEecCCCc-EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-----CCcEEEEEcCC
Q 026679          103 VCDIKFSNDG-KSMLLTTTNNN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-----DGTLHAWNINT  175 (235)
Q Consensus       103 v~~~~~~~~~-~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~  175 (235)
                      ...++++|.. ..++.+-.-|+ ..++|....+..............-.-.|||||.+|+..-.     .|.|-|||.+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            3456777743 34444544443 67889888777666554443333444679999999987643     47799999974


Q ss_pred             C-ceeeeecCCCcceeEEEeecCCCEEEEcccceEEe
Q 026679          176 R-NEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW  211 (235)
Q Consensus       176 ~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw  211 (235)
                      + ..+.++..|.-....+.|.+||+.++.+.|-|...
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIeth  186 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETH  186 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCCceecc
Confidence            3 45677888887889999999999999998877766

>smart00320 WD40 WD40 repeats

Probab=97.72  E-value=0.00015  Score=35.02  Aligned_cols=34  Identities=29%  Similarity=0.474  Sum_probs=29.7

Q ss_pred             eecCCCcceeEEEEccCCCeEEEecCCCcEEEEE
Q 026679           95 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD  128 (235)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  128 (235)
                      .+..|...+.++.|.+++..+++++.|+.+++|+
T Consensus         7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3446778899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.70  E-value=0.0099  Score=45.79  Aligned_cols=188  Identities=10%  Similarity=0.064  Sum_probs=90.5

Q ss_pred             CCeeEEEe-ccceEEEEecCc----ceeeeeeeccCC---------ceEEEcCCCCEEEEEec------CCeEEEEeccC
Q 026679           26 NDSFMSGS-LDHSVRIWDLRV----NACQGILRLRGR---------PTVAFDQQGLVFAVAME------AGAIKLFDSRS   85 (235)
Q Consensus        26 ~~~l~s~~-~d~~i~vwd~~~----~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~------dg~v~i~d~~~   85 (235)
                      .++|+..+ ..+.|+|.|+.+    .+..+++.....         ..+-.-|+|++++++-.      -|-+.++|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            45666655 678899999874    344555543211         11445578888887743      24677777665


Q ss_pred             CCCCCceeEeec---CCCcceeEEEEccCCCeEEEecC--------------------CCcEEEEEcCCCceeeeeccCC
Q 026679           86 YDKGPFDTFLVG---GDTAEVCDIKFSNDGKSMLLTTT--------------------NNNIYVLDAYGGEKRCGFSLEP  142 (235)
Q Consensus        86 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~--------------------d~~i~~~d~~~~~~~~~~~~~~  142 (235)
                      .+.    .-...   .....-..+-|.|..+.+++...                    ..++.+||+.+.+.++.+.+..
T Consensus       167 f~v----~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~  242 (461)
T PF05694_consen  167 FEV----KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE  242 (461)
T ss_dssp             --E----EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred             ccc----cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence            442    11111   11233456777887777776532                    3579999999999999988865


Q ss_pred             CCCcceeeEEeC--CCcEEEE-eCCCCcEEEEEc-CCCce----eeeecC-----------------CCcceeEEEeecC
Q 026679          143 SPNTNTEATFTP--DGQYVVS-GSGDGTLHAWNI-NTRNE----VACWNG-----------------NIGVVACLKWAPR  197 (235)
Q Consensus       143 ~~~~i~~~~~~~--~~~~l~~-~~~dg~i~v~d~-~~~~~----~~~~~~-----------------~~~~v~~~~~~~~  197 (235)
                      .......+.|..  +..+=++ +...++|..|-- ..++-    +..+..                 -..-|+.|..|.|
T Consensus       243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD  322 (461)
T PF05694_consen  243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD  322 (461)
T ss_dssp             TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred             CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence            444455666654  3433222 223444444433 33321    112211                 1245799999999


Q ss_pred             CCEEEEcc---cceEEeeCCCCC
Q 026679          198 RAMFVAAS---SVLSFWIPNPSS  217 (235)
Q Consensus       198 ~~~l~~~~---~~i~iw~~~~~~  217 (235)
                      .++|..+.   |+++.||+....
T Consensus       323 DrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  323 DRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             S-EEEEEETTTTEEEEEE-SSTT
T ss_pred             CCEEEEEcccCCcEEEEecCCCC
Confidence            99999987   899999996543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.68  E-value=0.0074  Score=46.50  Aligned_cols=143  Identities=17%  Similarity=0.232  Sum_probs=75.8

Q ss_pred             eEEEcCCCCEEEEEe-----------cCC-eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEE
Q 026679           59 TVAFDQQGLVFAVAM-----------EAG-AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV  126 (235)
Q Consensus        59 ~~~~~~~~~~l~~~~-----------~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  126 (235)
                      .++|.++|+++++-.           ..+ .|.+++-.+..........+.........+++.+++  |+++... .|..
T Consensus        18 ~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~-~i~~   94 (367)
T TIGR02604        18 AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP-DILF   94 (367)
T ss_pred             eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-eEEE
Confidence            377888887766643           123 666665443332111122222223356788898888  4444444 3544


Q ss_pred             E-EcCCC-----ce--e-eeeccCC--CCCcceeeEEeCCCcEEEEeCCC-------------------CcEEEEEcCCC
Q 026679          127 L-DAYGG-----EK--R-CGFSLEP--SPNTNTEATFTPDGQYVVSGSGD-------------------GTLHAWNINTR  176 (235)
Q Consensus       127 ~-d~~~~-----~~--~-~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~v~d~~~~  176 (235)
                      + |....     +.  + ..+....  +......+.|.|||.+.++-+..                   |.|.-++...+
T Consensus        95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~  174 (367)
T TIGR02604        95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG  174 (367)
T ss_pred             EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC
Confidence            4 44221     11  1 1121110  12346789999999876654421                   44555665544


Q ss_pred             ceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          177 NEVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       177 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      +. ..+.........++|+|+|.++++-.
T Consensus       175 ~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       175 KL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             eE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            43 23322223457899999998887654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.0004  Score=58.19  Aligned_cols=104  Identities=14%  Similarity=0.175  Sum_probs=75.7

Q ss_pred             CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC
Q 026679           65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP  144 (235)
Q Consensus        65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  144 (235)
                      .+..++.|+..|.+...|....-. +  ...-.....+|++++|+.+|..++.|-.+|.|.+||+..++..+.+..++++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~--~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLG-P--LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccc-h--hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence            556788899999999988876321 1  1222234578999999999999999999999999999999888887766554


Q ss_pred             -CcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679          145 -NTNTEATFTPDGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus       145 -~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  173 (235)
                       ..+..+.+..++..++++...|.  +|.+
T Consensus       175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence             22333444556667888877775  4543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.65  E-value=0.00024  Score=36.58  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=29.2

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCccee
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC   48 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~   48 (235)
                      ...|.+++|+|...+||.+..||.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999998 4443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.64  E-value=0.0045  Score=38.12  Aligned_cols=90  Identities=16%  Similarity=0.196  Sum_probs=60.1

Q ss_pred             CEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc
Q 026679           67 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT  146 (235)
Q Consensus        67 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  146 (235)
                      +.|++|+.|..|++|+-..       ..........|.++.-... ..++.+..+|+|-+|+-....    ...+.. ..
T Consensus        16 ~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl----WRiKSK-~~   82 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGDE-------IVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL----WRIKSK-NQ   82 (111)
T ss_pred             ceEEEecCCcEEEEEeCCc-------EEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee----eeeccC-CC
Confidence            6799999999999998654       2222234467777777665 569999999999999853221    222222 23


Q ss_pred             ceeeEEeC-CC---cEEEEeCCCCcEE
Q 026679          147 NTEATFTP-DG---QYVVSGSGDGTLH  169 (235)
Q Consensus       147 i~~~~~~~-~~---~~l~~~~~dg~i~  169 (235)
                      +.++.+.. ++   ..|++|-.+|.|-
T Consensus        83 ~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   83 VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            56666544 32   3688888888764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.62  E-value=0.00025  Score=36.49  Aligned_cols=33  Identities=12%  Similarity=0.332  Sum_probs=29.6

Q ss_pred             CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCce
Q 026679          145 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE  178 (235)
Q Consensus       145 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  178 (235)
                      ..|..++|+|...+||.++.+|.|.+|.+ +++.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            55899999999999999999999999998 5554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.59  E-value=0.006  Score=49.60  Aligned_cols=112  Identities=13%  Similarity=0.114  Sum_probs=77.2

Q ss_pred             eEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe--CCCcEEEEeCCCCcEEEEEcC-----C-
Q 026679          104 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT--PDGQYVVSGSGDGTLHAWNIN-----T-  175 (235)
Q Consensus       104 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~v~d~~-----~-  175 (235)
                      .-+.-+.-++..++-+....+.+||.+.+........ ...+.|..+.|.  |+|+.+++.+-.+.|.+|.-.     + 
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            3344444445444445566799999998886655554 234678999885  588998888888888888542     1 


Q ss_pred             ---Cceeeee--cCCC-cceeEEEeecCCCEEEEcccceEEeeCCCC
Q 026679          176 ---RNEVACW--NGNI-GVVACLKWAPRRAMFVAASSVLSFWIPNPS  216 (235)
Q Consensus       176 ---~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~  216 (235)
                         ...+..+  ..++ .+|.+..|.++|.+++++++.+.|++-...
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~~  158 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWLD  158 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCCcC
Confidence               1222222  2333 589999999999999999999999976443

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.55  E-value=0.00057  Score=47.37  Aligned_cols=141  Identities=13%  Similarity=0.079  Sum_probs=83.5

Q ss_pred             EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcc
Q 026679           68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN  147 (235)
Q Consensus        68 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  147 (235)
                      .+...+.+|.|.-++++..+....   ....+...   .....-+..+++|+.+|.|++|................ ..+
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~r---se~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~-e~i  104 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCR---SERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE-ESI  104 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhh---hhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhccc-ccc
Confidence            344556677777777765332110   00011111   11222346799999999999998763222211111111 222


Q ss_pred             ee-eEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCC-cceeEEEeecCCCEEEEc--c--cceEEeeCCC
Q 026679          148 TE-ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAMFVAA--S--SVLSFWIPNP  215 (235)
Q Consensus       148 ~~-~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~--~~i~iw~~~~  215 (235)
                      .+ +.--.++.+.+++..||.|+.|++.-.+.+.....|. .++..+..+..++++..+  |  ..++.|+++.
T Consensus       105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            22 2222355688999999999999998888887777776 566666666666777666  3  5578887754

>PHA02713 hypothetical protein; Provisional

Probab=97.53  E-value=0.0028  Score=51.51  Aligned_cols=156  Identities=6%  Similarity=0.040  Sum_probs=82.1

Q ss_pred             CCCeeEEEeccc-----eEEEEecCcceee--eeeeccCCceEEEcCCCCEEEEEecCC---------------------
Q 026679           25 VNDSFMSGSLDH-----SVRIWDLRVNACQ--GILRLRGRPTVAFDQQGLVFAVAMEAG---------------------   76 (235)
Q Consensus        25 ~~~~l~s~~~d~-----~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg---------------------   76 (235)
                      +|+..+.||.++     ++..||..+++-.  ..+........+..-++++.+.|+.++                     
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~  430 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS  430 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence            355666676653     4777887655322  222111111122233678888887542                     


Q ss_pred             --eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC------CcEEEEEcCC-CceeeeeccCCCCCcc
Q 026679           77 --AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN------NNIYVLDAYG-GEKRCGFSLEPSPNTN  147 (235)
Q Consensus        77 --~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~-~~~~~~~~~~~~~~~i  147 (235)
                        .+..||..+.+.........  ..... ++ ..-+++..+.|+.+      ..+..||..+ .+....-.+.......
T Consensus       431 ~~~ve~YDP~td~W~~v~~m~~--~r~~~-~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~  506 (557)
T PHA02713        431 SNKVIRYDTVNNIWETLPNFWT--GTIRP-GV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL  506 (557)
T ss_pred             cceEEEECCCCCeEeecCCCCc--ccccC-cE-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence              47778887755321111111  11111 12 22256666667653      2467899887 5554333333322222


Q ss_pred             eeeEEeCCCcEEEEeCCCC--cEEEEEcCCCceeeeecCCC
Q 026679          148 TEATFTPDGQYVVSGSGDG--TLHAWNINTRNEVACWNGNI  186 (235)
Q Consensus       148 ~~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~  186 (235)
                      ..+.+  +++..++|+.+|  .+..||..+.+-......|.
T Consensus       507 ~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~  545 (557)
T PHA02713        507 HTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS  545 (557)
T ss_pred             eeEEE--CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence            22222  778889999888  67788887776554444443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.53  E-value=0.023  Score=43.31  Aligned_cols=180  Identities=12%  Similarity=0.158  Sum_probs=87.2

Q ss_pred             eEEEeecCCCee-EEEeccc--eEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679           18 ISLCMSPVNDSF-MSGSLDH--SVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD   92 (235)
Q Consensus        18 ~~~~~~~~~~~l-~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~   92 (235)
                      +.=+|.++|+.| +.+..||  .+.+.|+.+++..+........  ...++|+++.++-......+.-.|+++.+.    
T Consensus        39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~----  114 (386)
T PF14583_consen   39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE----  114 (386)
T ss_dssp             TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E----
T ss_pred             cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE----
Confidence            334677788654 4454454  5677788888888777765432  377788888877666667888899988664    


Q ss_pred             eEeecCCCcceeEEEEc--cCCCeEEEecC----------------------CCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679           93 TFLVGGDTAEVCDIKFS--NDGKSMLLTTT----------------------NNNIYVLDAYGGEKRCGFSLEPSPNTNT  148 (235)
Q Consensus        93 ~~~~~~~~~~v~~~~~~--~~~~~l~~~~~----------------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~  148 (235)
                      ..........+-...|.  .|+..++-.-.                      ...|...|+.+++....+.-.   ..+.
T Consensus       115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~---~wlg  191 (386)
T PF14583_consen  115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT---DWLG  191 (386)
T ss_dssp             EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES---S-EE
T ss_pred             EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC---cccc
Confidence            22222333334334453  35554433211                      134777788888776555433   5577


Q ss_pred             eeEEeCCC-cEEEEeCC---CCc-EEEEEcC-CCceeeeecCC--CcceeEEEeecCCCEEEEc
Q 026679          149 EATFTPDG-QYVVSGSG---DGT-LHAWNIN-TRNEVACWNGN--IGVVACLKWAPRRAMFVAA  204 (235)
Q Consensus       149 ~~~~~~~~-~~l~~~~~---dg~-i~v~d~~-~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~  204 (235)
                      .+.|+|.. .+|+.|-+   +.. -+||-++ .+.....+..+  ...+..=-|.|||..|.--
T Consensus       192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~  255 (386)
T PF14583_consen  192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD  255 (386)
T ss_dssp             EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred             CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence            89999954 45555433   221 2455443 23322222222  2234444577888766553

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.52  E-value=0.028  Score=44.11  Aligned_cols=112  Identities=15%  Similarity=0.254  Sum_probs=69.1

Q ss_pred             EEEcCCCCEEEEEe-cCC----eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC-----------c
Q 026679           60 VAFDQQGLVFAVAM-EAG----AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-----------N  123 (235)
Q Consensus        60 ~~~~~~~~~l~~~~-~dg----~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~  123 (235)
                      ..++|++++++.+- ..|    .++++|+.+++..   .-.+..  .....+.|.++++.|+....+.           .
T Consensus       129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l---~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL---PDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE---EEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc---CCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            67899999988763 334    5999999887431   111111  1122399999988877664332           3


Q ss_pred             EEEEEcCCCcee--eeeccCCCCCcceeeEEeCCCcEEEEeC---CC-CcEEEEEcCCC
Q 026679          124 IYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGS---GD-GTLHAWNINTR  176 (235)
Q Consensus       124 i~~~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d-g~i~v~d~~~~  176 (235)
                      |+.|.+.+....  ..+...........+..++++++|+...   .+ ..+++.|+..+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            788888776543  3344333332256788999999987532   23 45888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.0041  Score=48.60  Aligned_cols=139  Identities=13%  Similarity=0.164  Sum_probs=93.0

Q ss_pred             eEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcCCCC-------EEEEEecCCeEEEEeccCCCCCCceeEeecCC-
Q 026679           29 FMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGL-------VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-   99 (235)
Q Consensus        29 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~-------~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-   99 (235)
                      |.++.....++-.|++.|+.+.....+.. +.+.+.|+.+       .-+.|-.+..|.-||.+-.....+  .....| 
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl--~~~q~kq  426 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL--AVVQSKQ  426 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCccee--eeeeccc
Confidence            34555556688889999999999888775 5577777543       235677788999999885443211  111122 


Q ss_pred             ---CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679          100 ---TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus       100 ---~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  173 (235)
                         .....|++-..+| ++++|+.+|.|++||- .+..-+ .-+++-..+|..+..+.+|++|++.+. .++.+.++
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AK-TAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAK-TALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT  499 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhh-hcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence               2334555555555 6999999999999996 433222 233455577999999999999877664 45666665

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.48  E-value=0.01  Score=45.17  Aligned_cols=166  Identities=12%  Similarity=0.168  Sum_probs=85.3

Q ss_pred             ecCcceeeeeeeccCCce-------EEEcCCCCEEEEEec-CC--eEEEEeccCCCCCCceeEeecCCC-cceeEEEEcc
Q 026679           42 DLRVNACQGILRLRGRPT-------VAFDQQGLVFAVAME-AG--AIKLFDSRSYDKGPFDTFLVGGDT-AEVCDIKFSN  110 (235)
Q Consensus        42 d~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~  110 (235)
                      |..+|..+..+......+       -+|.++|+.|+.++. +|  .+.+.|+.+++.     ..+.... .......++|
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-----~QLTdg~g~~~~g~~~s~   90 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEI-----TQLTDGPGDNTFGGFLSP   90 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-----EE---SS-B-TTT-EE-T
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEE-----EECccCCCCCccceEEec
Confidence            566777776666555544       467888976666554 54  566667766553     2222222 2233466788


Q ss_pred             CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEE--eCCCcEEEEeC----------------------CCC
Q 026679          111 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF--TPDGQYVVSGS----------------------GDG  166 (235)
Q Consensus       111 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~----------------------~dg  166 (235)
                      +.+.++....+..|.-.|+.+.+....+..+..  ......|  +.++..++-.-                      -..
T Consensus        91 ~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~  168 (386)
T PF14583_consen   91 DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDD--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC  168 (386)
T ss_dssp             TSSEEEEEETTTEEEEEETTT--EEEEEE--TT--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred             CCCeEEEEECCCeEEEEECCcCcEEEEEECCcc--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence            888887766677899999999887777766543  3333445  34566554221                      122


Q ss_pred             cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cc--eEEeeCCC
Q 026679          167 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SV--LSFWIPNP  215 (235)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~--i~iw~~~~  215 (235)
                      .|.-.|+.+|+....+. -...+..+.|+|...-+++-+     ..  -+||-++.
T Consensus       169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~  223 (386)
T PF14583_consen  169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT  223 (386)
T ss_dssp             EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred             eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence            46667777777655444 345678899999665555443     22  48887653

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.45  E-value=0.024  Score=43.77  Aligned_cols=189  Identities=13%  Similarity=0.126  Sum_probs=88.4

Q ss_pred             eecCCCeeEEEec------cceEEEEecCcceeeeeeeccCCce-----EEEcCCCCEEEEEec----------------
Q 026679           22 MSPVNDSFMSGSL------DHSVRIWDLRVNACQGILRLRGRPT-----VAFDQQGLVFAVAME----------------   74 (235)
Q Consensus        22 ~~~~~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~----------------   74 (235)
                      .-|+|+.++++=.      -|.+.+.|-++.+............     +.+.|..+.++++..                
T Consensus       137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~  216 (461)
T PF05694_consen  137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE  216 (461)
T ss_dssp             E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred             ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence            3467888777522      2457788887777777766543322     778888888888753                


Q ss_pred             ----CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc--CCCeEEE-ecCCCcEEEEEc-CCCcee--eeeccCC--
Q 026679           75 ----AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLL-TTTNNNIYVLDA-YGGEKR--CGFSLEP--  142 (235)
Q Consensus        75 ----dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~-~~~d~~i~~~d~-~~~~~~--~~~~~~~--  142 (235)
                          ..++.+||+.+.+.  .....+.........+.|..  +..+=++ +.-..+|..|-- ..++..  .......  
T Consensus       217 ~~~yG~~l~vWD~~~r~~--~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~  294 (461)
T PF05694_consen  217 AGKYGHSLHVWDWSTRKL--LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK  294 (461)
T ss_dssp             HH-S--EEEEEETTTTEE--EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred             cccccCeEEEEECCCCcE--eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence                35899999988654  22333333333455666654  3444333 333555655543 333221  1111111  


Q ss_pred             --------C-------CCcceeeEEeCCCcEEEEe-CCCCcEEEEEcCCCc---eeeeec----------------CCCc
Q 026679          143 --------S-------PNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRN---EVACWN----------------GNIG  187 (235)
Q Consensus       143 --------~-------~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~---~~~~~~----------------~~~~  187 (235)
                              -       +.-|+.+.+|.|.++|... -.+|.|+.||+.+..   ++.++.                .-.+
T Consensus       295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G  374 (461)
T PF05694_consen  295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG  374 (461)
T ss_dssp             --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred             cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence                    0       2457889999999999655 458999999997632   222211                0112


Q ss_pred             ceeEEEeecCCCEEEEcccceEEee
Q 026679          188 VVACLKWAPRRAMFVAASSVLSFWI  212 (235)
Q Consensus       188 ~v~~~~~~~~~~~l~~~~~~i~iw~  212 (235)
                      ...-+..|-||+.|....+-..-||
T Consensus       375 gPqMvqlS~DGkRlYvTnSLys~WD  399 (461)
T PF05694_consen  375 GPQMVQLSLDGKRLYVTNSLYSAWD  399 (461)
T ss_dssp             ----EEE-TTSSEEEEE----HHHH
T ss_pred             CCCeEEEccCCeEEEEEeecccccc
Confidence            3466888899998887754333343

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.39  E-value=0.02  Score=41.27  Aligned_cols=118  Identities=18%  Similarity=0.245  Sum_probs=74.3

Q ss_pred             ecCCCcceeEEEEccCCC-eEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcC
Q 026679           96 VGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN  174 (235)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  174 (235)
                      +.+-...+..++|.|+.+ ++++....+.|..++. +|+.+..+.+.+. +....+++..++.++++.-.++.+.++++.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF-GDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC-CCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            344455699999999755 5556667888988886 5788888877653 457889998888888887778999999984


Q ss_pred             CCce------eeeec-----CCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          175 TRNE------VACWN-----GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       175 ~~~~------~~~~~-----~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      ....      ...+.     .+...+-.++|.|.+..|+.+-  .-..+|.++.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence            3211      11111     2445689999999877777665  3356666654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.0062  Score=51.91  Aligned_cols=184  Identities=13%  Similarity=0.107  Sum_probs=108.8

Q ss_pred             EEEeecCCCeeEEEeccceEEEEecCcc-------e---------eeeeeeccC---CceEEEcCCCCEEEEEec--CCe
Q 026679           19 SLCMSPVNDSFMSGSLDHSVRIWDLRVN-------A---------CQGILRLRG---RPTVAFDQQGLVFAVAME--AGA   77 (235)
Q Consensus        19 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~---------~~~~~~~~~---~~~~~~~~~~~~l~~~~~--dg~   77 (235)
                      .++.++.-..+++++..+.+.|+-...-       .         ....+..+.   +..+...+|+...++...  +-.
T Consensus        46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~  125 (1405)
T KOG3630|consen   46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA  125 (1405)
T ss_pred             hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence            3455555556666666676666643211       0         112222222   222566677665554443  347


Q ss_pred             EEEEeccCCCCCCceeE-------eecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCccee
Q 026679           78 IKLFDSRSYDKGPFDTF-------LVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE  149 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~  149 (235)
                      |..||++..........       ..........++.|+|.- ...++...|+.|.+..+........ . -.-....++
T Consensus       126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~-s-~p~t~~~Ta  203 (1405)
T KOG3630|consen  126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT-S-FPVTNSQTA  203 (1405)
T ss_pred             EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhc-c-cCcccceee
Confidence            88999986543221111       111122345678888853 3356667788888887653322211 1 122245899


Q ss_pred             eEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC----CcceeEEEeecCCCEEEEcc
Q 026679          150 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----IGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       150 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~  205 (235)
                      ++|+|.|+.++.|-..|++.-|.. .++....+...    ...|.++.|-....++++-+
T Consensus       204 v~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  204 VLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             EEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            999999999999999999998875 44433333221    36899999999888887765

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.044  Score=45.01  Aligned_cols=204  Identities=11%  Similarity=0.093  Sum_probs=100.5

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee----ccC--CceEEEcCCCCEEEEEecCC
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR----LRG--RPTVAFDQQGLVFAVAMEAG   76 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~~--~~~~~~~~~~~~l~~~~~dg   76 (235)
                      +|+++..+.-....+..+.|+.+ ..|+....||++.+|++- |..+....    ...  +.-+.+..+|  +++-..+|
T Consensus        72 sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g  147 (829)
T KOG2280|consen   72 SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG--VAVLTVSG  147 (829)
T ss_pred             cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc--eEEEecCC
Confidence            46667766655558889999975 467777899999999974 33322211    111  1113333344  33333344


Q ss_pred             eEEEE-eccCCCCCCceeEeecCCCcceeEEEEccCCC---eEEEec-CCCcEEEEEcCCCceeeeeccCCCCCcceeeE
Q 026679           77 AIKLF-DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK---SMLLTT-TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT  151 (235)
Q Consensus        77 ~v~i~-d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~  151 (235)
                      .+.+- +............  ....-+-.|-...+++.   .++-.. ..+ ..++...... .+...+......+..+.
T Consensus       148 ~v~~i~~~~~~~~~~~~di--P~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~-~q~~~~~~~~~~~~ki~  223 (829)
T KOG2280|consen  148 QVILINGVEEPKLRKMPDI--PYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR-VQLHALSWPNSSVVKIS  223 (829)
T ss_pred             cEEEEcCCCcchhhhCCCC--CCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc-ccccccCCCCceEEEEE
Confidence            44433 2222111000000  01111112222222211   111111 000 0111111111 11112222235578899


Q ss_pred             EeCCCcEEEEeCCCCcEEEEEcCCCceeeeec--CCCcceeEEEeecCCCEEEEcccceEEeeCCC
Q 026679          152 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRAMFVAASSVLSFWIPNP  215 (235)
Q Consensus       152 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~  215 (235)
                      .||+.++|+.-...|.|.+-+....+....+.  .| .+...++|..+...+++--..+.+....+
T Consensus       224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~WcgndaVvl~~e~~l~lvgp~g  288 (829)
T KOG2280|consen  224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCGNDAVVLSWEVNLMLVGPPG  288 (829)
T ss_pred             EcCCcceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeecCCceEEEEeeeEEEEcCCC
Confidence            99999999999999999999987777766665  33 33447788766544443334444444333

>PHA02790 Kelch-like protein; Provisional

Probab=97.31  E-value=0.06  Score=43.21  Aligned_cols=180  Identities=6%  Similarity=-0.075  Sum_probs=87.6

Q ss_pred             CCeeEEEeccc-----eEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecC--CeEEEEeccCCCCCCceeEee
Q 026679           26 NDSFMSGSLDH-----SVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEA--GAIKLFDSRSYDKGPFDTFLV   96 (235)
Q Consensus        26 ~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~   96 (235)
                      +..++.|+.++     .+..||..++.-...-....  .......-++.+.++|+.+  ..+..||..+.+.....  .+
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~--~l  349 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMP--SL  349 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECC--CC
Confidence            44566776543     46678876654322221111  1112223477788888764  35777887654321111  11


Q ss_pred             cCCCcceeEEEEccCCCeEEEecCC---CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679           97 GGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus        97 ~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  173 (235)
                      .......  ....-+|+..+.|+.+   ..+..||.++.+....-.........  .+..-+++..+.|+   ...+||.
T Consensus       350 ~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~--~~~~~~~~IYv~GG---~~e~ydp  422 (480)
T PHA02790        350 LKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS--CALVFGRRLFLVGR---NAEFYCE  422 (480)
T ss_pred             CCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc--eEEEECCEEEEECC---ceEEecC
Confidence            1111111  1122356766777754   34778998876654432222111111  12233666666664   4678888


Q ss_pred             CCCceee--eecCCCcceeEEEeecCCCEEEEcc-------cceEEeeCCCC
Q 026679          174 NTRNEVA--CWNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPS  216 (235)
Q Consensus       174 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~  216 (235)
                      ++.+-..  .+....... +++ .-+++..+.|+       ..+..||++..
T Consensus       423 ~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        423 SSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence            7655432  222111111 222 23566666665       23667777654

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.31  E-value=0.0012  Score=45.88  Aligned_cols=142  Identities=14%  Similarity=0.114  Sum_probs=72.6

Q ss_pred             eEEEeccceEEEEecCcceeeee-eeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEE
Q 026679           29 FMSGSLDHSVRIWDLRVNACQGI-LRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK  107 (235)
Q Consensus        29 l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  107 (235)
                      +..-+.|+.|+-++++.-+.... -..+.. -...-.-+..+++|+.+|.|.+|.......  .............+.+.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e-~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~--~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDE-GQRVVTASAKLMVGTSDGAVYVFNWNLEGA--HSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhc-ceeecccCceEEeecccceEEEecCCccch--HHHhhhcccccceeccc
Confidence            33445677777666543221100 000000 022233456799999999999998763221  00111111111222222


Q ss_pred             EccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe--CCCCcEEEEEcC
Q 026679          108 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG--SGDGTLHAWNIN  174 (235)
Q Consensus       108 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~v~d~~  174 (235)
                      --.++.+..+++.+|.|+.|+...++.+.....+.. .++.....+..+++++.+  +.|..++.|++.
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccC-CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            233556788999999999999987776543332221 223333344444455544  555555555553

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.29  E-value=0.037  Score=40.28  Aligned_cols=158  Identities=11%  Similarity=0.069  Sum_probs=91.5

Q ss_pred             CceEEEcCCCCEEEEEe---cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEE-cCCC
Q 026679           57 RPTVAFDQQGLVFAVAM---EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD-AYGG  132 (235)
Q Consensus        57 ~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d-~~~~  132 (235)
                      ....++++++..++...   ....+.++......     ....  ....+....|++++...+....+....++. ...+
T Consensus        26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-----~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-----RPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-----eeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence            34489999998877665   23345554433211     1111  223677789999977666666566666663 3333


Q ss_pred             ceee-eeccCCCCCcceeeEEeCCCcEEEEeC---CCCcEEEEEcC---CC------ceeeeecCCCcceeEEEeecCCC
Q 026679          133 EKRC-GFSLEPSPNTNTEATFTPDGQYVVSGS---GDGTLHAWNIN---TR------NEVACWNGNIGVVACLKWAPRRA  199 (235)
Q Consensus       133 ~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~---~~------~~~~~~~~~~~~v~~~~~~~~~~  199 (235)
                      +... ..........|..+.+||||..++.-.   .++.|.+--+.   .+      ............+..+.|.+++.
T Consensus        99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen   99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence            3221 122222212799999999999887654   35777776543   23      11111222346889999999999


Q ss_pred             EEEEcc---cceEE-eeCCCCCCCCC
Q 026679          200 MFVAAS---SVLSF-WIPNPSSNSTD  221 (235)
Q Consensus       200 ~l~~~~---~~i~i-w~~~~~~~~~~  221 (235)
                      +++.+.   +.+.. ..........+
T Consensus       179 L~V~~~~~~~~~~~~v~~dG~~~~~l  204 (253)
T PF10647_consen  179 LVVLGRSAGGPVVRLVSVDGGPSTPL  204 (253)
T ss_pred             EEEEeCCCCCceeEEEEccCCccccc
Confidence            888876   22332 44555444443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.28  E-value=0.043  Score=40.85  Aligned_cols=154  Identities=14%  Similarity=0.158  Sum_probs=73.8

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCc--ceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEecc-CCCCCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRV--NACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSR-SYDKGP   90 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~-~~~~~~   90 (235)
                      .+.+..+.-+++|+++++++.-....-||...  .++...........+.|.|++.+.+.+ ..|.++.=+.. ..+.-.
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            35678888889999888887665566777432  122222223334459999998776654 78888877611 111000


Q ss_pred             ceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec-cCCCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679           91 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLH  169 (235)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  169 (235)
                      ............+..++|.++++..++++ .|.+ +.....|+.-+... ...-+.....+.|.++.+-++.| .+|.|-
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll  299 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLL  299 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEE
T ss_pred             cccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEE
Confidence            00111111223478999999877666554 4444 33444454333322 22233457788887765555555 577665


Q ss_pred             EE
Q 026679          170 AW  171 (235)
Q Consensus       170 v~  171 (235)
                      -|
T Consensus       300 ~~  301 (302)
T PF14870_consen  300 RY  301 (302)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.02  Score=39.56  Aligned_cols=173  Identities=13%  Similarity=0.149  Sum_probs=94.3

Q ss_pred             CCCeeEEEecc--ceEEEEecCcceeeeeeeccCCceE--EEcCCCC-EEEEEecCCeEEEEeccCCCCCCceeEeecCC
Q 026679           25 VNDSFMSGSLD--HSVRIWDLRVNACQGILRLRGRPTV--AFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD   99 (235)
Q Consensus        25 ~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~   99 (235)
                      +|.++.+.+.-  ..|++||+++++.+...+.......  -...-+. .....-.+|.-..+|.++.+...  .+...  
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg--~~~y~--  130 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG--RFSYE--  130 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc--ccccC--
Confidence            34555555543  3699999999987776655421210  0111222 33344568888889988765411  22221  


Q ss_pred             CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCC---cceeeEEeCCCcEEEEeCCCCcEEEEEcCCC
Q 026679          100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN---TNTEATFTPDGQYVVSGSGDGTLHAWNINTR  176 (235)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  176 (235)
                       +.-..+  ..|+..|+.+.....++.-|..+-.............   .++.+.|- +|...|-.-.+..|...|..+|
T Consensus       131 -GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG  206 (262)
T COG3823         131 -GEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG  206 (262)
T ss_pred             -Ccceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence             223333  3466667777777777777766543332222221112   22334442 5555555444555666666676


Q ss_pred             ceeeee------------cCCCcceeEEEeecCC-CEEEEcc
Q 026679          177 NEVACW------------NGNIGVVACLKWAPRR-AMFVAAS  205 (235)
Q Consensus       177 ~~~~~~------------~~~~~~v~~~~~~~~~-~~l~~~~  205 (235)
                      +.+..+            ..+......|++.|++ +++++|-
T Consensus       207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            655443            2244567889999987 5555553

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.25  E-value=0.075  Score=43.13  Aligned_cols=187  Identities=11%  Similarity=0.027  Sum_probs=108.0

Q ss_pred             CCeeEEEeccceEEEEecCcceeeeeeeccCCc-e------------EEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-T------------VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD   92 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~------------~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~   92 (235)
                      +..++.++.++.|.-.|.++++.+..+...... .            +++  .+..++.++.++.+..+|.++++..-  
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W--  144 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW--  144 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe--
Confidence            456777778889999999999888776543210 0            111  23567788889999999998877521  


Q ss_pred             eEeecCCCcceeEEEEcc---CCCeEEEecC------CCcEEEEEcCCCceeeeeccCCCC-------------------
Q 026679           93 TFLVGGDTAEVCDIKFSN---DGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSP-------------------  144 (235)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~---~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~-------------------  144 (235)
                      ......+... ..+.-+|   ++ .++++..      +|.|..+|.++|+.+-.+......                   
T Consensus       145 ~~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t  222 (527)
T TIGR03075       145 SKKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT  222 (527)
T ss_pred             eccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence            1111111100 0111112   33 4555432      688999999999877554332111                   


Q ss_pred             -----------CcceeeEEeCCCcEEEEeCCC-----C-----------cEEEEEcCCCceeeeecCCCccee-------
Q 026679          145 -----------NTNTEATFTPDGQYVVSGSGD-----G-----------TLHAWNINTRNEVACWNGNIGVVA-------  190 (235)
Q Consensus       145 -----------~~i~~~~~~~~~~~l~~~~~d-----g-----------~i~v~d~~~~~~~~~~~~~~~~v~-------  190 (235)
                                 ..-..+++.|...+++.+..+     +           .|.-.|+++|+..-.++.....++       
T Consensus       223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~  302 (527)
T TIGR03075       223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE  302 (527)
T ss_pred             CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence                       011234677766677665522     2           577788899998766653222111       


Q ss_pred             --EEEeecCCC---EEEEcc--cceEEeeCCCCCC
Q 026679          191 --CLKWAPRRA---MFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       191 --~~~~~~~~~---~l~~~~--~~i~iw~~~~~~~  218 (235)
                        -+....+|+   .++.+.  |.+.+.|-++++.
T Consensus       303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence              122224665   566666  6677778776654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.25  E-value=0.041  Score=40.07  Aligned_cols=150  Identities=19%  Similarity=0.248  Sum_probs=89.4

Q ss_pred             ceeEEEeecCCCeeEEEe---ccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEe-ccCCCCCCc
Q 026679           16 RVISLCMSPVNDSFMSGS---LDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFD-SRSYDKGPF   91 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d-~~~~~~~~~   91 (235)
                      .+.+.+++++++.++...   ....++++... +...............|++++...+....+...+++. ...+.....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC-CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            688999999998777655   33445555432 2222223444445588999988877777677767664 233222111


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEec---CCCcEEEEEcCC---C---ceeeeecc-CCCCCcceeeEEeCCCcEEEE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAYG---G---EKRCGFSL-EPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~---~---~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~  161 (235)
                       ..........|..+.++|||..++...   .++.|.+--+..   +   ........ ......+..+.|.+++.+++.
T Consensus       104 -~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~  182 (253)
T PF10647_consen  104 -EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL  182 (253)
T ss_pred             -EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence             112222222899999999999888766   356677665432   2   00011111 122356889999999998877


Q ss_pred             eCCCCc
Q 026679          162 GSGDGT  167 (235)
Q Consensus       162 ~~~dg~  167 (235)
                      +...+.
T Consensus       183 ~~~~~~  188 (253)
T PF10647_consen  183 GRSAGG  188 (253)
T ss_pred             eCCCCC
Confidence            665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.22  E-value=0.016  Score=46.09  Aligned_cols=117  Identities=13%  Similarity=0.197  Sum_probs=74.4

Q ss_pred             CCCcceeEEEEccC----CCeEEEecCCCcEEEEEcCC-----CceeeeeccC---CCCCcceeeEEeCCCcEEEEeCCC
Q 026679           98 GDTAEVCDIKFSND----GKSMLLTTTNNNIYVLDAYG-----GEKRCGFSLE---PSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus        98 ~~~~~v~~~~~~~~----~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                      +.-..|..+.|.|-    ...|++.-....|.+|.+..     ++.+.....+   ..+--...+.|+|....|++-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            34467899999984    33577777888999999862     2222211111   111223457899998888766554


Q ss_pred             CcEEEEEcC--CCceeeeecCCCcceeEEEeecCCCEEEEccc-c--eEEeeCCC
Q 026679          166 GTLHAWNIN--TRNEVACWNGNIGVVACLKWAPRRAMFVAASS-V--LSFWIPNP  215 (235)
Q Consensus       166 g~i~v~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~--i~iw~~~~  215 (235)
                      ..=.+++++  +.+....++ ..+.|.|.+|.+||+.|+.+-| .  -+|||-..
T Consensus       134 dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             ceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            443456654  333334454 4578999999999999888863 3  56776543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.18  E-value=0.092  Score=42.64  Aligned_cols=154  Identities=11%  Similarity=0.117  Sum_probs=92.0

Q ss_pred             CCeeEEEeccceEEEEecCcceeeeeeeccCCc---eEEEcC--CCCEEEEEec------CCeEEEEeccCCCCCCceeE
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP---TVAFDQ--QGLVFAVAME------AGAIKLFDSRSYDKGPFDTF   94 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~--~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~   94 (235)
                      +..++.++.|+.+.-.|.++|+.+.........   .+.-+|  .+..++++..      +|.|..+|.++++..-....
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            346777888999999999999887765532211   111122  1234444432      68898888887664111000


Q ss_pred             eecC--------------------------C-Ccce-eEEEEccCCCeEEEecCC-----C-----------cEEEEEcC
Q 026679           95 LVGG--------------------------D-TAEV-CDIKFSNDGKSMLLTTTN-----N-----------NIYVLDAY  130 (235)
Q Consensus        95 ~~~~--------------------------~-~~~v-~~~~~~~~~~~l~~~~~d-----~-----------~i~~~d~~  130 (235)
                      .-..                          + ...+ ..+++.|+..+++.+..+     +           .|.-.|++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence            0000                          0 0111 134666666666665521     1           58888999


Q ss_pred             CCceeeeeccCCCCC-------cceeeEEeCCCc---EEEEeCCCCcEEEEEcCCCcee
Q 026679          131 GGEKRCGFSLEPSPN-------TNTEATFTPDGQ---YVVSGSGDGTLHAWNINTRNEV  179 (235)
Q Consensus       131 ~~~~~~~~~~~~~~~-------~i~~~~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~  179 (235)
                      +|+..-.++...|..       ...-+.+..+|+   .++.+..+|.+++.|.++|+.+
T Consensus       280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            999887776655431       111122334666   7789999999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.13  E-value=0.039  Score=45.10  Aligned_cols=109  Identities=13%  Similarity=0.180  Sum_probs=72.0

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEc--cCCCeEEEecCCCcEEEEEcC-------
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS--NDGKSMLLTTTNNNIYVLDAY-------  130 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~-------  130 (235)
                      +.-+.-++..++-.....+.|||.+.....   ..........|.++.|.  |+++.+++.+..+.|.+|--.       
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE---~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLE---YEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEE---EeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            445555565555556678999999876531   11112456789999995  589999999999999998642       


Q ss_pred             --CCceeeeeccCCCC-CcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679          131 --GGEKRCGFSLEPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus       131 --~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  173 (235)
                        +...+..+....+. .+|.+..|.++|.+++.++  +.+.|+|-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence              11233333333332 5688999999998776554  35777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.13  E-value=0.11  Score=44.22  Aligned_cols=113  Identities=10%  Similarity=0.058  Sum_probs=74.5

Q ss_pred             ceeEEEEccC-CCeEEEecC----------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEE
Q 026679          102 EVCDIKFSND-GKSMLLTTT----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA  170 (235)
Q Consensus       102 ~v~~~~~~~~-~~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  170 (235)
                      .+.++.|..| +.++++|+.          .|.|.+|....++.+....-..-.+.+.++.. -+|++||.-  ...|++
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrL  852 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRL  852 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEE
Confidence            3455568777 666777653          57888888877333332222222233433322 166666554  447999


Q ss_pred             EEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          171 WNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      |++.+.+.+..-..+..++..+...-.+..++.|+  +.+.+..++..+
T Consensus       853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence            99988877777677888899999999999999998  777666665443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.04  E-value=0.043  Score=39.99  Aligned_cols=117  Identities=15%  Similarity=0.246  Sum_probs=87.6

Q ss_pred             CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc
Q 026679           98 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN  177 (235)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  177 (235)
                      +....+.++.|+|+.+.|++......-.++=-..|+.+..+.+..- .....+.+..+|++.++--.++.+.++.+....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            4445699999999999999988887777777778999988887764 335678899999999888889999998876543


Q ss_pred             eeeeec---------CC-CcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          178 EVACWN---------GN-IGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       178 ~~~~~~---------~~-~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      .+....         .+ +.....++|.|....+..+-  .=+.||.++.
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~  211 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ  211 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence            221111         12 45678999999888888776  3377776653

>PHA03098 kelch-like protein; Provisional

Probab=96.94  E-value=0.064  Score=43.68  Aligned_cols=148  Identities=11%  Similarity=0.090  Sum_probs=73.4

Q ss_pred             CCCeeEEEecc-----ceEEEEecCcceeee--eeeccCCceEEEcCCCCEEEEEecC------CeEEEEeccCCCCCCc
Q 026679           25 VNDSFMSGSLD-----HSVRIWDLRVNACQG--ILRLRGRPTVAFDQQGLVFAVAMEA------GAIKLFDSRSYDKGPF   91 (235)
Q Consensus        25 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~   91 (235)
                      ++..++.||.+     ..+..||..+++-..  .+........+..-++++++.|+.+      ..+..||+.+......
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            45566667654     246677776553221  1111111112223467777777732      4678889876543221


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCC--------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTN--------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                      ....  ..... .++ ...++..++.|+.+        ..+.+||..+++....-...........+.  -+++.++.|+
T Consensus       422 ~~~p--~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG  495 (534)
T PHA03098        422 SPLP--ISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGG  495 (534)
T ss_pred             CCCC--ccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcC
Confidence            1111  01111 112 22355666666542        238899988776543322221111111222  2677777777


Q ss_pred             CC-----CcEEEEEcCCCce
Q 026679          164 GD-----GTLHAWNINTRNE  178 (235)
Q Consensus       164 ~d-----g~i~v~d~~~~~~  178 (235)
                      .+     ..+.+||..+.+-
T Consensus       496 ~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        496 DKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             CcCCcccceeEEEeCCCCEE
Confidence            54     4678888776543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.07  Score=41.45  Aligned_cols=138  Identities=12%  Similarity=0.122  Sum_probs=90.3

Q ss_pred             CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee--eccCC
Q 026679           65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG--FSLEP  142 (235)
Q Consensus        65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~  142 (235)
                      |.+..+.+...|.+.-|.+..........+... ..++|.++.|++|.+.+++--.+.+|.+++....+....  .+...
T Consensus        32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~-d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~  110 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMD-DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT  110 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCCCCCceeeec-CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc
Confidence            444455555566677777765543333333333 346999999999999999999999999999754433222  22233


Q ss_pred             CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          143 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       143 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      ....|....|+.+ .-+|.-...| +-+|.... .+.+...+.|...|.-..|.++-+.++-++
T Consensus       111 k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  111 KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            3345888999876 4555555444 56666543 344555667778888889999887766554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.88  E-value=0.086  Score=37.27  Aligned_cols=137  Identities=14%  Similarity=0.119  Sum_probs=80.4

Q ss_pred             cceeEEEeecCCCeeEEEec---------cceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEE-ecCCeEEEEe-
Q 026679           15 ERVISLCMSPVNDSFMSGSL---------DHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVA-MEAGAIKLFD-   82 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~dg~v~i~d-   82 (235)
                      ...+.-..+|+|++++-.-.         .|.++.|-.. ++.......-.+ +.++|+.+.+.+..- +.+-+|.-|| 
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            34455567788887432211         2344454331 122222221222 238898877766554 4566777777 


Q ss_pred             -ccCCCCCC-ceeEeecC----CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC
Q 026679           83 -SRSYDKGP-FDTFLVGG----DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP  154 (235)
Q Consensus        83 -~~~~~~~~-~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~  154 (235)
                       ..++.... ...+.+..    ..-..-.++...+|+..++.-..++|..+|..+|+.+..+.++.  ..+++++|--
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt--~qitsccFgG  263 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT--PQITSCCFGG  263 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC--CceEEEEecC
Confidence             55443211 11222221    11112345567788888888889999999999999999998875  4499999953

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.87  E-value=0.047  Score=42.98  Aligned_cols=145  Identities=10%  Similarity=0.095  Sum_probs=89.6

Q ss_pred             CCCee-EEEeccceEEEEecCcceeeeeeeccCCceEEEcCCC-------CEEEEEecCCeEEEEeccCCCCCCceeEee
Q 026679           25 VNDSF-MSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQG-------LVFAVAMEAGAIKLFDSRSYDKGPFDTFLV   96 (235)
Q Consensus        25 ~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~   96 (235)
                      +.++| ..|+....++-.|++.|+.+.....+...++.+.|..       ..-++|-.+..|.-.|.+-... .+.....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN-Ki~v~es  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN-KIKVVES  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCC-ceeeeee
Confidence            33443 3455566777788889999999998887788888853       2345566666676667664331 1111111


Q ss_pred             c--CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcC
Q 026679           97 G--GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN  174 (235)
Q Consensus        97 ~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  174 (235)
                      .  .......+..- ....++++++..|.|++||--......  -++.-...|..+..+.+|+++++.+.. ++.+-|++
T Consensus       557 KdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKt--alP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         557 KDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKT--ALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             hhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhh--cCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            0  01112222222 244589999999999999954333222  233344568889999999998877654 56676764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.75  E-value=0.18  Score=39.03  Aligned_cols=146  Identities=14%  Similarity=0.186  Sum_probs=76.9

Q ss_pred             cceeEEEeecCCCeeEEEe-----------ccc-eEEEEecCc--cee--eeeeec-cC-CceEEEcCCCCEEEEEecCC
Q 026679           15 ERVISLCMSPVNDSFMSGS-----------LDH-SVRIWDLRV--NAC--QGILRL-RG-RPTVAFDQQGLVFAVAMEAG   76 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~-----------~d~-~i~vwd~~~--~~~--~~~~~~-~~-~~~~~~~~~~~~l~~~~~dg   76 (235)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++.  ...+.. -. ...+++.+++ +++ +....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            3456889999998777643           223 677776432  322  122221 12 2338888888 444 44443


Q ss_pred             eEEEEeccCCCCC--CceeE--eecC----CCcceeEEEEccCCCeEEEecCC-------------------CcEEEEEc
Q 026679           77 AIKLFDSRSYDKG--PFDTF--LVGG----DTAEVCDIKFSNDGKSMLLTTTN-------------------NNIYVLDA  129 (235)
Q Consensus        77 ~v~i~d~~~~~~~--~~~~~--~~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------------~~i~~~d~  129 (235)
                      ..++.|.......  .....  .+..    +......++|.|||.+.++.+..                   +.|..++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3334354332111  11111  1111    13447789999999866654421                   44666665


Q ss_pred             CCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679          130 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus       130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                      ..++.. .+. ... .....++|+|+|+++++-..+
T Consensus       172 dg~~~e-~~a-~G~-rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       172 DGGKLR-VVA-HGF-QNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCCeEE-EEe-cCc-CCCccceECCCCCEEEEccCC
Confidence            544432 222 222 335679999999988765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.68  E-value=0.13  Score=43.15  Aligned_cols=77  Identities=19%  Similarity=0.247  Sum_probs=52.4

Q ss_pred             CcceeEEEEccCCCeEEEecCCCcEEEEEcCC---------Cce--ee-eec------cCCCCCcceeeEEeCC---CcE
Q 026679          100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG---------GEK--RC-GFS------LEPSPNTNTEATFTPD---GQY  158 (235)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---------~~~--~~-~~~------~~~~~~~i~~~~~~~~---~~~  158 (235)
                      ...|..+.++|+|.+++..+..|...+.=.+.         ++.  .+ .+.      .......|..+.|+|.   +..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            35688999999999999988866444332221         111  11 111      1123356889999996   588


Q ss_pred             EEEeCCCCcEEEEEcCCC
Q 026679          159 VVSGSGDGTLHAWNINTR  176 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~  176 (235)
                      |++-+.|+.+++||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            999999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.67  E-value=0.3  Score=40.67  Aligned_cols=110  Identities=9%  Similarity=0.053  Sum_probs=68.4

Q ss_pred             eeEEEEcc--CCCeEEEecCCCcEEEEEcCC-------C----ce-------eeeeccCCCCCcceeeEEe--CCCcEEE
Q 026679          103 VCDIKFSN--DGKSMLLTTTNNNIYVLDAYG-------G----EK-------RCGFSLEPSPNTNTEATFT--PDGQYVV  160 (235)
Q Consensus       103 v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~-------~----~~-------~~~~~~~~~~~~i~~~~~~--~~~~~l~  160 (235)
                      |+.+....  +.+.|+++.+||.|.+|...+       .    ..       ..-+... -...+.+++++  ...++||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            44443332  456788999999999997521       0    00       0011111 12457788988  7888999


Q ss_pred             EeCCCCcEEEEEcCCC--ceeee-ecCCCcceeEEEeecCC-----C-EEEEcc--cceEEeeC
Q 026679          161 SGSGDGTLHAWNINTR--NEVAC-WNGNIGVVACLKWAPRR-----A-MFVAAS--SVLSFWIP  213 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~--~~~~~-~~~~~~~v~~~~~~~~~-----~-~l~~~~--~~i~iw~~  213 (235)
                      +++....|.||-....  +.... -..+...|.+|+|-++.     . .+++++  |.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            9999888888765432  11111 11255678999998743     2 666666  88777776

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.65  E-value=0.22  Score=38.93  Aligned_cols=149  Identities=15%  Similarity=0.110  Sum_probs=86.2

Q ss_pred             CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc----CCCeEEEecCCCcEEEEEcCCC--c-----
Q 026679           65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN----DGKSMLLTTTNNNIYVLDAYGG--E-----  133 (235)
Q Consensus        65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~~~d~~~~--~-----  133 (235)
                      +...+++|+..|.++||+.......+........-..+|..+..-+    .....++.-.-..+.+|.+...  .     
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            3468999999999999998665544333333444456777776532    2223333455677888887321  1     


Q ss_pred             e--eeeeccCCCCCcceeeEEeCC-----CcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-
Q 026679          134 K--RCGFSLEPSPNTNTEATFTPD-----GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-  205 (235)
Q Consensus       134 ~--~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  205 (235)
                      .  +....-+.-......++.-|-     ..+|++=+.||.+.+|+-+.......+.. ---..-+.+.|....+++++ 
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence            1  111111111122344444442     35788889999999999765443333332 22234467788777777776 


Q ss_pred             -cceEEeeCC
Q 026679          206 -SVLSFWIPN  214 (235)
Q Consensus       206 -~~i~iw~~~  214 (235)
                       ..+..|.+.
T Consensus       195 s~~l~~Yky~  204 (418)
T PF14727_consen  195 SWTLECYKYQ  204 (418)
T ss_pred             ceeEEEecHH
Confidence             457777764

>PHA02790 Kelch-like protein; Provisional

Probab=96.65  E-value=0.18  Score=40.60  Aligned_cols=144  Identities=10%  Similarity=-0.019  Sum_probs=70.2

Q ss_pred             CCCeeEEEecc--ceEEEEecCcceeee--eeeccCCceEEEcCCCCEEEEEecCC---eEEEEeccCCCCCCceeEeec
Q 026679           25 VNDSFMSGSLD--HSVRIWDLRVNACQG--ILRLRGRPTVAFDQQGLVFAVAMEAG---AIKLFDSRSYDKGPFDTFLVG   97 (235)
Q Consensus        25 ~~~~l~s~~~d--~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~   97 (235)
                      ++...+.|+.+  ..+..||..+++-..  .+........+..-++++.+.|+.++   .+..||.++........  +.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~--m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS--TY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC--CC
Confidence            45556666653  346777765543221  22111111123334778888887653   46778877644311111  10


Q ss_pred             CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC-----CcEEEEE
Q 026679           98 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWN  172 (235)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d  172 (235)
                      ...... ++ ..-++...+.|   |.+.+||..+++....-.+........ ++ .-+++..+.|+.+     ..+.+||
T Consensus       396 ~~r~~~-~~-~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd  468 (480)
T PHA02790        396 YPHYKS-CA-LVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYN  468 (480)
T ss_pred             Cccccc-eE-EEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccE-EE-EECCEEEEECCcCCCcccceEEEEE
Confidence            011111 12 22355555555   357789988776554333322111222 22 2367777888754     3466677


Q ss_pred             cCCCc
Q 026679          173 INTRN  177 (235)
Q Consensus       173 ~~~~~  177 (235)
                      ..+.+
T Consensus       469 ~~~~~  473 (480)
T PHA02790        469 NRTYS  473 (480)
T ss_pred             CCCCe
Confidence            65543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.029  Score=48.14  Aligned_cols=141  Identities=13%  Similarity=0.090  Sum_probs=88.1

Q ss_pred             ceeEEEeecCCCee--EEEeccceEEEEecCcceeee-----eeecc--------CCceEEEcCCC-CEEEEEecCCeEE
Q 026679           16 RVISLCMSPVNDSF--MSGSLDHSVRIWDLRVNACQG-----ILRLR--------GRPTVAFDQQG-LVFAVAMEAGAIK   79 (235)
Q Consensus        16 ~v~~~~~~~~~~~l--~s~~~d~~i~vwd~~~~~~~~-----~~~~~--------~~~~~~~~~~~-~~l~~~~~dg~v~   79 (235)
                      +|..+...+|+...  +..+.+-.|..||+++-....     .+..+        -..++.|.|.- ...+++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            55666666776543  334445578899987542211     11111        11237777743 4567778899998


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC--CCCcceeeEEeCCCc
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP--SPNTNTEATFTPDGQ  157 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~  157 (235)
                      +..+.....    ...........++++|+|.|+.++.|-..|++.-|... .+....+....  ....|.+++|-....
T Consensus       182 V~~~~~~~~----~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  182 VKSTKQLAQ----NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             hhhhhhhhh----hhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEeccee
Confidence            887764332    11112334578999999999999999999999999754 33322222211  136799999988777


Q ss_pred             EEEE
Q 026679          158 YVVS  161 (235)
Q Consensus       158 ~l~~  161 (235)
                      ++++
T Consensus       257 flvv  260 (1405)
T KOG3630|consen  257 FLVV  260 (1405)
T ss_pred             EEEE
Confidence            7654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.65  E-value=0.011  Score=29.47  Aligned_cols=31  Identities=13%  Similarity=0.295  Sum_probs=26.0

Q ss_pred             CcceeeEEeCCC---cEEEEeCCCCcEEEEEcCC
Q 026679          145 NTNTEATFTPDG---QYVVSGSGDGTLHAWNINT  175 (235)
Q Consensus       145 ~~i~~~~~~~~~---~~l~~~~~dg~i~v~d~~~  175 (235)
                      +.++++.|+|+.   .+|+.+-..|.+.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358899999854   5888888889999999985

It contains a characteristic DLL sequence motif.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=96.63  E-value=0.045  Score=42.49  Aligned_cols=175  Identities=14%  Similarity=0.145  Sum_probs=101.8

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeee--eeeccCCc-------eEEEcCCCCEEEEEec
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG--ILRLRGRP-------TVAFDQQGLVFAVAME   74 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~-------~~~~~~~~~~l~~~~~   74 (235)
                      ++.++.+......|..+-..|||+.++.-+. ..+.++++.+.....  ........       .+..-..|..++++..
T Consensus       210 ~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~  288 (733)
T COG4590         210 QEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE  288 (733)
T ss_pred             hhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence            4455556666778888999999998876655 578888886543211  11111110       0222345677888899


Q ss_pred             CCeEEEE-eccCCCCCCceeEe-ecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEE
Q 026679           75 AGAIKLF-DSRSYDKGPFDTFL-VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF  152 (235)
Q Consensus        75 dg~v~i~-d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~  152 (235)
                      ||-|.-| |.+....+...... ..-...++..+.-..+.+-+++-+.+|++..+.....+.+-.-..-   ..+.-+++
T Consensus       289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~---~~~~~~~~  365 (733)
T COG4590         289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY---QAPQLVAM  365 (733)
T ss_pred             CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh---cCcceeee
Confidence            9988776 55544432221111 1111233333322223445677777888888765444333211111   23566899


Q ss_pred             eCCCcEEEEeCCCCcEEEEEcCCCceeeeec
Q 026679          153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWN  183 (235)
Q Consensus       153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  183 (235)
                      ||.+.+|++-. .|.|+++.+++..+.-++.
T Consensus       366 Sp~~~~Ll~e~-~gki~~~~l~Nr~Peisws  395 (733)
T COG4590         366 SPNQAYLLSED-QGKIRLAQLENRNPEISWS  395 (733)
T ss_pred             Ccccchheeec-CCceEEEEecCCCCCccHH
Confidence            99999988754 5679999998776655543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.61  E-value=0.058  Score=41.98  Aligned_cols=83  Identities=17%  Similarity=0.248  Sum_probs=57.5

Q ss_pred             CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe----CC----------------Cc
Q 026679           98 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT----PD----------------GQ  157 (235)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~----~~----------------~~  157 (235)
                      .....+.+++.+|.+++.++...-|+|.++|+.++..++.++.-...    .+.|-    +.                ..
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA----qc~wi~~~~~~~~~~~~~~~~~~~~~~~l  380 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA----QCGWIEVPEEGDRDRSNSNSPKSSSRFAL  380 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc----eEEEEEeecccccccccccccCCCCcceE
Confidence            44566889999999998888888899999999988877665432110    01110    00                11


Q ss_pred             E-EEEeCCCCcEEEEEcCCCceeeeecC
Q 026679          158 Y-VVSGSGDGTLHAWNINTRNEVACWNG  184 (235)
Q Consensus       158 ~-l~~~~~dg~i~v~d~~~~~~~~~~~~  184 (235)
                      + ++-+-..|.|.||++++|..+..+..
T Consensus       381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  381 FLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            2 34566789999999999988877653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.52  E-value=0.32  Score=39.20  Aligned_cols=153  Identities=8%  Similarity=0.061  Sum_probs=86.4

Q ss_pred             cceeEEEeecCCCe-eEEEe--ccceEEEEecCcceeeeeeeccCCceEEEcCC----CCEEEEEecCCeEEEEeccCCC
Q 026679           15 ERVISLCMSPVNDS-FMSGS--LDHSVRIWDLRVNACQGILRLRGRPTVAFDQQ----GLVFAVAMEAGAIKLFDSRSYD   87 (235)
Q Consensus        15 ~~v~~~~~~~~~~~-l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~dg~v~i~d~~~~~   87 (235)
                      .+|..++|. ||+. +.|.-  ..|.+++=|-   ..+.  +......+.|.|-    ...+++.-....|.+|.+....
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viG--qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIG--QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEee--ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            478899997 4554 44432  2333333221   1111  2223344888873    3355666667899999986321


Q ss_pred             --CCCceeEeecC--CCcc--eeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           88 --KGPFDTFLVGG--DTAE--VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        88 --~~~~~~~~~~~--~~~~--v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                        .........-.  ...+  -..+.|+|....|++-.....-.+++++........... ..+.|.|.+|.+||+.|++
T Consensus        94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVV  172 (671)
T PF15390_consen   94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVV  172 (671)
T ss_pred             cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEE
Confidence              11111111111  1112  235779999888887776665567777655443333343 3367999999999998865


Q ss_pred             eC-CCCcEEEEEcC
Q 026679          162 GS-GDGTLHAWNIN  174 (235)
Q Consensus       162 ~~-~dg~i~v~d~~  174 (235)
                      +- ..=.-++||-.
T Consensus       173 AvGSsLHSyiWd~~  186 (671)
T PF15390_consen  173 AVGSSLHSYIWDSA  186 (671)
T ss_pred             EeCCeEEEEEecCc
Confidence            53 23346788853

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.48  E-value=0.00067  Score=52.32  Aligned_cols=138  Identities=12%  Similarity=0.191  Sum_probs=97.9

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEE-ecCCCcEEEEEcCCCceeeee
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TTTNNNIYVLDAYGGEKRCGF  138 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~  138 (235)
                      ..|-|.+.-++.++.+..+..||-....      ......+.....++|..++..++. +-..+.+.+||+.+.... .+
T Consensus        40 ~~w~~e~~nlavaca~tiv~~YD~agq~------~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qL  112 (615)
T KOG2247|consen   40 HRWRPEGHNLAVACANTIVIYYDKAGQV------ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QL  112 (615)
T ss_pred             eeEecCCCceehhhhhhHHHhhhhhcce------ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HH
Confidence            6788888779999888888888865422      122233455667888888776554 556889999999765432 22


Q ss_pred             ccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          139 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       139 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      ..... ..-.-+.|++.+..++.+...|.+.+++..+.+.+...-.|..++++++|.+.+..+...+
T Consensus       113 E~gg~-~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dc  178 (615)
T KOG2247|consen  113 ESGGT-SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDC  178 (615)
T ss_pred             hccCc-chHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCc
Confidence            22221 1112278999999999999999999999988777665555888999999999876665543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.47  E-value=0.031  Score=39.62  Aligned_cols=67  Identities=16%  Similarity=0.231  Sum_probs=51.6

Q ss_pred             eEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee-------c-------CCCcceeEEEeecCCCEEEEcc-cceEEeeCC
Q 026679          150 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-------N-------GNIGVVACLKWAPRRAMFVAAS-SVLSFWIPN  214 (235)
Q Consensus       150 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~  214 (235)
                      +.+..++++|++-+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+ |..+.|+.+
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            345668899999999999999999987764332       1       2446788899999998887776 778888776


Q ss_pred             CC
Q 026679          215 PS  216 (235)
Q Consensus       215 ~~  216 (235)
                      ..
T Consensus        96 L~   97 (219)
T PF07569_consen   96 LG   97 (219)
T ss_pred             cc
Confidence            54

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK10115 protease 2; Provisional

Probab=96.46  E-value=0.45  Score=40.17  Aligned_cols=113  Identities=9%  Similarity=0.085  Sum_probs=66.2

Q ss_pred             cceeEEEeecCCCeeEEEe-----ccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecC------CeEEEEec
Q 026679           15 ERVISLCMSPVNDSFMSGS-----LDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEA------GAIKLFDS   83 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~v~i~d~   83 (235)
                      -.+..+.|+|++++|+.+.     ....|++-|+.++..+...-......++|.++++.|+....+      ..|..+++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            3466788999999877543     233688889987763322211112348999999877666442      36777777


Q ss_pred             cCCCCCCceeEeecCCCccee-EEEEccCCCeEEEecC---CCcEEEEEc
Q 026679           84 RSYDKGPFDTFLVGGDTAEVC-DIKFSNDGKSMLLTTT---NNNIYVLDA  129 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~i~~~d~  129 (235)
                      .+........+.  ....... ....+.++++++..+.   ++.+.+++.
T Consensus       207 gt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        207 GTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            776322222222  2222222 3333447877665443   457888885

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.46  E-value=0.048  Score=42.41  Aligned_cols=78  Identities=13%  Similarity=0.121  Sum_probs=56.8

Q ss_pred             hcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcC----CC---------------C--E
Q 026679           10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ----QG---------------L--V   68 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~---------------~--~   68 (235)
                      |......+.+++.+|++++.|+...=|.|.++|+.++..++.+++.....+.|..    ..               .  +
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            4456677899999999998888888899999999999988888876654444321    11               1  2


Q ss_pred             EEEEecCCeEEEEeccCCC
Q 026679           69 FAVAMEAGAIKLFDSRSYD   87 (235)
Q Consensus        69 l~~~~~dg~v~i~d~~~~~   87 (235)
                      ++-+-.-|.+.+|.++++.
T Consensus       383 vIyaprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGP  401 (415)
T ss_pred             EEEeccCCeEEEEecCCCC
Confidence            3334557888888887754

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.45  E-value=0.26  Score=37.40  Aligned_cols=112  Identities=16%  Similarity=0.200  Sum_probs=67.8

Q ss_pred             eeEEEEccCCCeEEEecCC------CcEEEEEcCCCceeeeeccC-------------CCCCcceeeEEeCCCcEEEEeC
Q 026679          103 VCDIKFSNDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLE-------------PSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus       103 v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                      .-++++.+++.++++.-.+      ..|..++.. ++....+..+             .......+++++|+|+.|+++.
T Consensus        87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            3467776777766666566      778888865 5554443221             1235578899999999666553


Q ss_pred             C-----CC--c-------EEE--EEcCC-Cceeeee----cC-----CCcceeEEEeecCCCEEEEc-------ccceEE
Q 026679          164 G-----DG--T-------LHA--WNINT-RNEVACW----NG-----NIGVVACLKWAPRRAMFVAA-------SSVLSF  210 (235)
Q Consensus       164 ~-----dg--~-------i~v--~d~~~-~~~~~~~----~~-----~~~~v~~~~~~~~~~~l~~~-------~~~i~i  210 (235)
                      +     |+  .       +++  ||..+ ++....+    ..     ....|..+.+.+++++|+.-       +..++|
T Consensus       166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri  245 (326)
T PF13449_consen  166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI  245 (326)
T ss_pred             CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence            3     22  1       444  55444 3222222    21     34578999999999887753       134666


Q ss_pred             eeCCC
Q 026679          211 WIPNP  215 (235)
Q Consensus       211 w~~~~  215 (235)
                      +.++.
T Consensus       246 ~~v~l  250 (326)
T PF13449_consen  246 YRVDL  250 (326)
T ss_pred             EEEEc
Confidence            66543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.39  E-value=0.26  Score=36.78  Aligned_cols=145  Identities=14%  Similarity=0.126  Sum_probs=75.6

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC-CCceeee-
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEKRCG-  137 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~-  137 (235)
                      +.-+++|++++++..-....-||.-...-    ..........+..+.|.|++...+ ....|.|+.=+.. ..+.-.. 
T Consensus       150 ~~r~~dG~~vavs~~G~~~~s~~~G~~~w----~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~  224 (302)
T PF14870_consen  150 ITRSSDGRYVAVSSRGNFYSSWDPGQTTW----QPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEP  224 (302)
T ss_dssp             EEE-TTS-EEEEETTSSEEEEE-TT-SS-----EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---
T ss_pred             EEECCCCcEEEEECcccEEEEecCCCccc----eEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccc
Confidence            56678999888886665566677543221    222233457899999999987545 4588888887722 2222111 


Q ss_pred             -eccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee---cCCCcceeEEEeecCCCEEEEcc-cceEEe
Q 026679          138 -FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW---NGNIGVVACLKWAPRRAMFVAAS-SVLSFW  211 (235)
Q Consensus       138 -~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw  211 (235)
                       .........+..++|.+++...++|+.. .+ +.....|+.=...   ..-...++.|.|.++.+-++.|. |.+--|
T Consensus       225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  225 IIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             cCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence             1121222347889999988777766644 44 3444555432222   23345688999988777777776 654433

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.39  E-value=0.52  Score=40.12  Aligned_cols=157  Identities=14%  Similarity=0.094  Sum_probs=91.3

Q ss_pred             CCeeEEEeccceEEEEecCcceeeeeeeccCCc--------------eEEEcC--CCCEEEEEec----------CCeEE
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--------------TVAFDQ--QGLVFAVAME----------AGAIK   79 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------------~~~~~~--~~~~l~~~~~----------dg~v~   79 (235)
                      +..++.++.|+.+.-.|.++|+....+......              ...-.|  .+..+++|+.          +|.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            457888889999999999999887665332110              011112  2345556643          68899


Q ss_pred             EEeccCCCCCCceeEe-------e-cC-----CCcce-eEEEEccCCCeEEEec------------------CCCcEEEE
Q 026679           80 LFDSRSYDKGPFDTFL-------V-GG-----DTAEV-CDIKFSNDGKSMLLTT------------------TNNNIYVL  127 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~-------~-~~-----~~~~v-~~~~~~~~~~~l~~~~------------------~d~~i~~~  127 (235)
                      -+|.++++..-.....       . .+     ....+ ..+++.++...++.+.                  ..+.|.-.
T Consensus       340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL  419 (764)
T TIGR03074       340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL  419 (764)
T ss_pred             EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence            9999887742111000       0 00     00011 2334455444444321                  13567888


Q ss_pred             EcCCCceeeeeccCCCC-------CcceeeEEeC-CCc---EEEEeCCCCcEEEEEcCCCceeeee
Q 026679          128 DAYGGEKRCGFSLEPSP-------NTNTEATFTP-DGQ---YVVSGSGDGTLHAWNINTRNEVACW  182 (235)
Q Consensus       128 d~~~~~~~~~~~~~~~~-------~~i~~~~~~~-~~~---~l~~~~~dg~i~v~d~~~~~~~~~~  182 (235)
                      |.++++..-.++...|.       ....-+.+.. +|+   .++.++.+|.++++|.++|+.+...
T Consensus       420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            88999887776654332       1111122332 553   7889999999999999999887543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.37  E-value=0.12  Score=36.09  Aligned_cols=103  Identities=13%  Similarity=0.206  Sum_probs=63.9

Q ss_pred             CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC---C---cEEEE---EcC--CCceee-
Q 026679          113 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---G---TLHAW---NIN--TRNEVA-  180 (235)
Q Consensus       113 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g---~i~v~---d~~--~~~~~~-  180 (235)
                      +.|+.+.....|.+|++..........+..- +.|..+.++..|+||++--++   .   .+|+|   +..  ...++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            4565557777899999984433333333332 568899999999999986332   2   45664   222  111111 


Q ss_pred             eecC---------------------CCcceeEEEeec-CCCEEEEcccceEEeeCCCC
Q 026679          181 CWNG---------------------NIGVVACLKWAP-RRAMFVAASSVLSFWIPNPS  216 (235)
Q Consensus       181 ~~~~---------------------~~~~v~~~~~~~-~~~~l~~~~~~i~iw~~~~~  216 (235)
                      .+.+                     -..++.+++..| .|++++++.+.+.+|.+...
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~  165 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ  165 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence            1111                     134677888888 56777666688999988644

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.37  E-value=0.02  Score=28.63  Aligned_cols=30  Identities=17%  Similarity=0.225  Sum_probs=25.5

Q ss_pred             ceeEEEEccCC---CeEEEecCCCcEEEEEcCC
Q 026679          102 EVCDIKFSNDG---KSMLLTTTNNNIYVLDAYG  131 (235)
Q Consensus       102 ~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~  131 (235)
                      .++++.|+|+.   .+|+.+-..+.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            58899999844   5888888899999999985

It contains a characteristic DLL sequence motif.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.31  E-value=0.14  Score=40.42  Aligned_cols=142  Identities=10%  Similarity=0.070  Sum_probs=85.0

Q ss_pred             CCCEEE-EEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCC-------eEEEecCCCcEEEEEcCCCc-ee
Q 026679           65 QGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-------SMLLTTTNNNIYVLDAYGGE-KR  135 (235)
Q Consensus        65 ~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~~~d~~~~~-~~  135 (235)
                      +..+++ .|.....++--|++.++.    .-....+...  -+.|.|+.+       .-++|-.+..|.-.|.+-.. .+
T Consensus       478 dssli~~dg~~~~kLykmDIErGkv----veeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi  551 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKV----VEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI  551 (776)
T ss_pred             CcceEEecCCCcccceeeeccccee----eeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence            344333 334445566666666553    2222233322  356666422       23445556667777766432 22


Q ss_pred             eeeccCCCCCcceeeEEeC----CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEE
Q 026679          136 CGFSLEPSPNTNTEATFTP----DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSF  210 (235)
Q Consensus       136 ~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~i  210 (235)
                      ......   ...+.-.|+.    ...++++++..|.|++||.-.-+....+++....|..+..+.+|.++++.+ ..+.+
T Consensus       552 ~v~esK---dY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL  628 (776)
T COG5167         552 KVVESK---DYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLL  628 (776)
T ss_pred             eeeeeh---hccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEE
Confidence            222211   1222233332    345899999999999999755555556677778999999999999998888 66888


Q ss_pred             eeCCC
Q 026679          211 WIPNP  215 (235)
Q Consensus       211 w~~~~  215 (235)
                      -|+..
T Consensus       629 ~d~~i  633 (776)
T COG5167         629 TDVPI  633 (776)
T ss_pred             Eeccc
Confidence            77754

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.22  E-value=0.68  Score=39.73  Aligned_cols=119  Identities=15%  Similarity=0.180  Sum_probs=72.8

Q ss_pred             cceeEEEEccCCCeEEEecCC--------------CcEEEEEcCCCceeeeeccCCCC--CcceeeEEeCC-CcEEEEeC
Q 026679          101 AEVCDIKFSNDGKSMLLTTTN--------------NNIYVLDAYGGEKRCGFSLEPSP--NTNTEATFTPD-GQYVVSGS  163 (235)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~d--------------~~i~~~d~~~~~~~~~~~~~~~~--~~i~~~~~~~~-~~~l~~~~  163 (235)
                      .....+++.+....+.+.+..              ..++++|-.+-+.....+.....  ..+.++.|..| +.++++|+
T Consensus       715 ~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT  794 (1096)
T KOG1897|consen  715 ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGT  794 (1096)
T ss_pred             CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEE
Confidence            345566677644444443321              13777887777766655554432  23445568777 77888775


Q ss_pred             C----------CCcEEEEEcCCCceeeeecCC--CcceeEEEeecCCCEEEEcccceEEeeCCCCCCCC
Q 026679          164 G----------DGTLHAWNINTRNEVACWNGN--IGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNST  220 (235)
Q Consensus       164 ~----------dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~~~~  220 (235)
                      .          .|.|.+|....+..+.....+  .+.+.++.- -+|+++|+-+..+++|++...+...
T Consensus       795 ~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In~~vrLye~t~~~eLr  862 (1096)
T KOG1897|consen  795 GLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGINQSVRLYEWTTERELR  862 (1096)
T ss_pred             EeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEecCcEEEEEEccccceeh
Confidence            2          578999988774444443222  344444432 2688888888999999998774433

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.36  Score=35.50  Aligned_cols=153  Identities=9%  Similarity=0.062  Sum_probs=92.3

Q ss_pred             eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE
Q 026679           17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF   94 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~   94 (235)
                      +..+.++  +++...+.++.-++|.|+.+......+..-.  .-.-.+.-.|++..++..+.-+.+.|+.+.+.+.+ .-
T Consensus        89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l-ag  165 (370)
T COG5276          89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL-AG  165 (370)
T ss_pred             hheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee-ee
Confidence            3445555  4667777777889999998765433332222  22345556788988888777788899988765332 22


Q ss_pred             eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC-CcceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679           95 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  173 (235)
                      ........-..++.+  |++-..+..|+-+.+.|+......... .+-.. ..+.++..+++.-+++...+  -+.+-|.
T Consensus       166 rya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli-~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~  240 (370)
T COG5276         166 RYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLI-GSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDV  240 (370)
T ss_pred             eeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEE-EEEecCCceEEEEecCCeeEEEEccc--ceEEEec
Confidence            222222333455555  677777888999999999765432211 11111 24677777777666655443  2556666


Q ss_pred             CCCc
Q 026679          174 NTRN  177 (235)
Q Consensus       174 ~~~~  177 (235)
                      .+.+
T Consensus       241 s~~s  244 (370)
T COG5276         241 SGPS  244 (370)
T ss_pred             CCCC
Confidence            5544

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.04  E-value=0.2  Score=32.12  Aligned_cols=105  Identities=9%  Similarity=0.116  Sum_probs=64.7

Q ss_pred             EEccCCCeEEEecCCCcEEEEEcCCCc--------eeeeeccCCCCCcceeeEEeC-----CCcEEEEeCCCCcEEEEEc
Q 026679          107 KFSNDGKSMLLTTTNNNIYVLDAYGGE--------KRCGFSLEPSPNTNTEATFTP-----DGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus       107 ~~~~~~~~l~~~~~d~~i~~~d~~~~~--------~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~v~d~  173 (235)
                      .|......|++++..|+|.+++.....        .+..+.+.   ..|++++-.+     +...|+.|+.. .|..||+
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin---~~italaaG~l~~~~~~D~LliGt~t-~llaYDV   80 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN---QEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV   80 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC---CceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc
Confidence            455555678888888899999875432        23333433   3356655433     34567777655 6889999


Q ss_pred             CCCceeeeecCCCcceeEEEeec----CCCEEEEcc-cceEEeeCCCC
Q 026679          174 NTRNEVACWNGNIGVVACLKWAP----RRAMFVAAS-SVLSFWIPNPS  216 (235)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~-~~i~iw~~~~~  216 (235)
                      .+...+..-. -...+.++.+-.    +..+++.|+ ..|.-+|.++.
T Consensus        81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~  127 (136)
T PF14781_consen   81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN  127 (136)
T ss_pred             ccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence            8776654443 335677777643    355666666 55666666554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.00  E-value=0.42  Score=35.39  Aligned_cols=69  Identities=14%  Similarity=0.222  Sum_probs=43.9

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecC------cc-eeeeeeecc------CCce-EEEcCCC------------CEE
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLR------VN-ACQGILRLR------GRPT-VAFDQQG------------LVF   69 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~------~~-~~~~~~~~~------~~~~-~~~~~~~------------~~l   69 (235)
                      .-+.|+++|.+.+-++...-+...+||..      .. ..+-.+...      ..+. +.|+...            ..+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45789999988777777777889999986      12 122233311      1111 4454321            247


Q ss_pred             EEEecCCeEEEEecc
Q 026679           70 AVAMEAGAIKLFDSR   84 (235)
Q Consensus        70 ~~~~~dg~v~i~d~~   84 (235)
                      +.+++||+|.-|...
T Consensus       104 if~tEdGTisaW~p~  118 (336)
T TIGR03118       104 LFVTEDGTLSGWAPA  118 (336)
T ss_pred             EEEeCCceEEeecCc
Confidence            888999999999854

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.94  E-value=0.91  Score=38.74  Aligned_cols=188  Identities=11%  Similarity=0.067  Sum_probs=106.9

Q ss_pred             CCeeEEEeccceEEEEecCcceeeeeeeccCCc--------e--EEEc----------------CCCCEEEEEecCCeEE
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--------T--VAFD----------------QQGLVFAVAMEAGAIK   79 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------~--~~~~----------------~~~~~l~~~~~dg~v~   79 (235)
                      +..++.++.++.|.-.|.++|+.+..+......        +  +++.                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            457778888899999999999888776543211        1  2221                1345788888999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcce-------------eEEEEcc--CCCeEEEecC----------CCcEEEEEcCCCce
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEV-------------CDIKFSN--DGKSMLLTTT----------NNNIYVLDAYGGEK  134 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~i~~~d~~~~~~  134 (235)
                      -.|.++++.    ...+. ....+             ..+.-.|  .+..+++++.          +|.|+-+|.++|+.
T Consensus       274 ALDA~TGk~----~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl  348 (764)
T TIGR03074       274 ALDADTGKL----CEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL  348 (764)
T ss_pred             EEECCCCCE----EEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence            999988764    11110 10100             0111122  2345666642          68899999999998


Q ss_pred             eeeeccCC----------------CCCcceeeEEeCCCcEEEEeC------------------CCCcEEEEEcCCCceee
Q 026679          135 RCGFSLEP----------------SPNTNTEATFTPDGQYVVSGS------------------GDGTLHAWNINTRNEVA  180 (235)
Q Consensus       135 ~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~------------------~dg~i~v~d~~~~~~~~  180 (235)
                      .-.+....                ....-..++++|+...++.+.                  ..+.|.-.|.++|+..-
T Consensus       349 ~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W  428 (764)
T TIGR03074       349 VWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW  428 (764)
T ss_pred             eeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEE
Confidence            76654310                001112345566555554422                  13457778888888876


Q ss_pred             eecCCCcce---------eEEEeec-CCC---EEEEcc--cceEEeeCCCCCC
Q 026679          181 CWNGNIGVV---------ACLKWAP-RRA---MFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       181 ~~~~~~~~v---------~~~~~~~-~~~---~l~~~~--~~i~iw~~~~~~~  218 (235)
                      .++.....+         .=+.+.. +|+   .++.++  |.+.+.|-++++.
T Consensus       429 ~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  481 (764)
T TIGR03074       429 VFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP  481 (764)
T ss_pred             EecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence            665311111         1122222 453   566666  6677888776543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.88  E-value=0.68  Score=36.78  Aligned_cols=107  Identities=7%  Similarity=0.058  Sum_probs=56.0

Q ss_pred             eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce---eEeecCCCcceeEEEEccCC------CeEEEec----------
Q 026679           59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD---TFLVGGDTAEVCDIKFSNDG------KSMLLTT----------  119 (235)
Q Consensus        59 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~------~~l~~~~----------  119 (235)
                      .++|.|++++|++--..|.|++++..+.......   .............++++|+-      .+|....          
T Consensus        34 ~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~  113 (454)
T TIGR03606        34 ALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELP  113 (454)
T ss_pred             EEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCcc
Confidence            3888999877666555688888876543321111   01111125667889999874      2344332          


Q ss_pred             CCCcEEEEEcCCC--c---eeeeeccC--CCCCcceeeEEeCCCcEEEEeCCC
Q 026679          120 TNNNIYVLDAYGG--E---KRCGFSLE--PSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus       120 ~d~~i~~~d~~~~--~---~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                      ....|.-|.+...  .   ....+...  .....-..+.|.|||.++++.++.
T Consensus       114 ~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       114 NHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence            1234555555321  1   11111111  111224568899999877655543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.84  E-value=0.36  Score=40.27  Aligned_cols=106  Identities=13%  Similarity=0.230  Sum_probs=70.3

Q ss_pred             CCCEEEEEecCCeEEEEeccC-------C----C-------CCCceeEeecCCCcceeEEEEc--cCCCeEEEecCCCcE
Q 026679           65 QGLVFAVAMEAGAIKLFDSRS-------Y----D-------KGPFDTFLVGGDTAEVCDIKFS--NDGKSMLLTTTNNNI  124 (235)
Q Consensus        65 ~~~~l~~~~~dg~v~i~d~~~-------~----~-------~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i  124 (235)
                      +...|+.+..||.|.+|.++.       .    +       ..+.  +. ......+++++++  ...+++|+++....|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~--f~-~~v~~SaWGLdIh~~~~~rlIAVSsNs~~V  189 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF--FH-LRVGASAWGLDIHDYKKSRLIAVSSNSQEV  189 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC--eE-eecCCceeEEEEEecCcceEEEEecCCceE
Confidence            557899999999999997632       1    0       0011  11 1234578899998  788888888888888


Q ss_pred             EEEEcCCCc-eeeeeccCCCCCcceeeEEeCCC---c---EEEEeCCCCcEEEEEc
Q 026679          125 YVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDG---Q---YVVSGSGDGTLHAWNI  173 (235)
Q Consensus       125 ~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~v~d~  173 (235)
                      .+|-..... .......+.+...|.+++|-++.   .   +|++++-.|.+.+|++
T Consensus       190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            887655421 11111122344558899997743   2   7788888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.84  E-value=0.41  Score=34.01  Aligned_cols=95  Identities=14%  Similarity=0.158  Sum_probs=65.1

Q ss_pred             eeEEEEccCCCeEEEe-cCCCcEEEEE--cCCCceeee---eccCC----CCCcceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679          103 VCDIKFSNDGKSMLLT-TTNNNIYVLD--AYGGEKRCG---FSLEP----SPNTNTEATFTPDGQYVVSGSGDGTLHAWN  172 (235)
Q Consensus       103 v~~~~~~~~~~~l~~~-~~d~~i~~~d--~~~~~~~~~---~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  172 (235)
                      -+.++|+.+.+.+... +.+-+|.-||  ..+|.....   +.+..    ..-..-.++...+|++.++.-..++|...|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            3568888777666544 4466676676  555433211   11111    111123466777889888888899999999


Q ss_pred             cCCCceeeeecCCCcceeEEEeecC
Q 026679          173 INTRNEVACWNGNIGVVACLKWAPR  197 (235)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~  197 (235)
                      ..+|+.+.+++-....|++++|--.
T Consensus       240 p~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecCC
Confidence            9999999999988889999999643

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.83  E-value=0.018  Score=48.24  Aligned_cols=163  Identities=13%  Similarity=0.141  Sum_probs=90.1

Q ss_pred             hhcccccceeEEEeecC-CCeeEEEeccceEEEEecC--cceeeeeeecc-----C--CceEEEcC---CCCEEEEEecC
Q 026679            9 YFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLR--VNACQGILRLR-----G--RPTVAFDQ---QGLVFAVAMEA   75 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~-----~--~~~~~~~~---~~~~l~~~~~d   75 (235)
                      .++|..+.|-.+.|-.. -..+.  -.-|.+.|||++  .|+....+..+     +  ...+.|.|   +.-++..+..+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            35667777888888432 12222  334678899875  34333322221     1  12255555   55677778888


Q ss_pred             CeEEEEeccCCCCCCceeEeecCCCcceeE-----------EEEccCCCeEEEecCCCcEEEEEcC-----CCceeeeec
Q 026679           76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCD-----------IKFSNDGKSMLLTTTNNNIYVLDAY-----GGEKRCGFS  139 (235)
Q Consensus        76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~-----------~~~~~~~~~l~~~~~d~~i~~~d~~-----~~~~~~~~~  139 (235)
                      +.+++....+...     ..+.+|...+..           -..+|||..++.++.||.+..|.+.     ...+....+
T Consensus       205 ~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk  279 (1283)
T KOG1916|consen  205 GEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK  279 (1283)
T ss_pred             CceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC
Confidence            9998877655332     111224333322           2368999999999999998887653     223333333


Q ss_pred             cCCCCCcceeeEEeCCC---------cEEEEeCC-CCcEEEEEcCCCcee
Q 026679          140 LEPSPNTNTEATFTPDG---------QYVVSGSG-DGTLHAWNINTRNEV  179 (235)
Q Consensus       140 ~~~~~~~i~~~~~~~~~---------~~l~~~~~-dg~i~v~d~~~~~~~  179 (235)
                      .+.. .+-.|.-++.+.         .++++++. +..+++|.....+++
T Consensus       280 phd~-~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  280 PHDK-HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCCC-CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            3332 222222232221         23455544 456889987776665

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.82  E-value=0.12  Score=36.66  Aligned_cols=69  Identities=22%  Similarity=0.276  Sum_probs=49.1

Q ss_pred             EccCCCeEEEecCCCcEEEEEcCCCceeeee-c----cC-------CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679          108 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-S----LE-------PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT  175 (235)
Q Consensus       108 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~----~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  175 (235)
                      +..++.+|++.+.+|.+++||+.+++....- .    +.       .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4457889999999999999999988764332 0    11       2335678888888888776654 57788888754


Q ss_pred             Cc
Q 026679          176 RN  177 (235)
Q Consensus       176 ~~  177 (235)
                      +.
T Consensus        97 ~~   98 (219)
T PF07569_consen   97 GC   98 (219)
T ss_pred             ce
Confidence            43

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.65  E-value=0.47  Score=33.26  Aligned_cols=139  Identities=11%  Similarity=0.066  Sum_probs=76.9

Q ss_pred             CEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC------cEEEE---EcC--CCcee
Q 026679           67 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN------NIYVL---DAY--GGEKR  135 (235)
Q Consensus        67 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~~---d~~--~~~~~  135 (235)
                      +.|+.+...+.|.+|++.+........+.   --+.|..+.++..|+++++--.+.      .+++|   ...  ..+.+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v  105 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV  105 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc---chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence            45555567788999999955543333333   236889999999999999865422      34553   221  11111


Q ss_pred             ---------------------eeeccCCCCCcceeeEEeC-CCcEEEEeCCCCcEEEEEcCCCce-ee-----eec----
Q 026679          136 ---------------------CGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNE-VA-----CWN----  183 (235)
Q Consensus       136 ---------------------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~-~~-----~~~----  183 (235)
                                           ...+++. ..++.+++-.| .|+++ .|+ ++.+.+|.+..... ..     .+.    
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~  182 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLI  182 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEEEecccccEEechhhhh
Confidence                                 1111111 24567777777 45544 444 34688888764332 11     111    


Q ss_pred             -CCC-cceeEEEeecCCCEEEEcc-cceEEeeC
Q 026679          184 -GNI-GVVACLKWAPRRAMFVAAS-SVLSFWIP  213 (235)
Q Consensus       184 -~~~-~~v~~~~~~~~~~~l~~~~-~~i~iw~~  213 (235)
                       .|. -.+..+++.  +.|+|..+ -.+++..+
T Consensus       183 ~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  183 DHIDNFKPTQVAIC--EGYIAVMSDLEVLVLKL  213 (215)
T ss_pred             heecCceEEEEEEE--eeEEEEecCCEEEEEEE
Confidence             111 124455553  56777777 55666654

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=95.63  E-value=0.64  Score=39.08  Aligned_cols=108  Identities=10%  Similarity=0.180  Sum_probs=58.9

Q ss_pred             eEEEEccCCCeEEEecCCCc-----EEEEEcCCCceeeeeccC-CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc
Q 026679          104 CDIKFSNDGKSMLLTTTNNN-----IYVLDAYGGEKRCGFSLE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN  177 (235)
Q Consensus       104 ~~~~~~~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  177 (235)
                      ..+.|-|+|..+++-..||.     |.++.. +|-....+.+. +....+...+|+-....++.+ ..+.+.+|-..+-.
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh  327 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH  327 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence            35889999999998775543     555553 22111111111 111335556676555444443 45579999877655


Q ss_pred             eeeeecCCCcceeEEEeecCC--CEEEEcccceEEeeC
Q 026679          178 EVACWNGNIGVVACLKWAPRR--AMFVAASSVLSFWIP  213 (235)
Q Consensus       178 ~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~i~iw~~  213 (235)
                      ........-..+.-+.|+|..  ..+.++++.|..-.+
T Consensus       328 WYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f  365 (1243)
T COG5290         328 WYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVFF  365 (1243)
T ss_pred             EEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEEe
Confidence            433333333456778899843  445555555443333

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.60  E-value=0.47  Score=36.18  Aligned_cols=19  Identities=32%  Similarity=0.464  Sum_probs=12.2

Q ss_pred             cceeeEEeCCCcEEEEeCC
Q 026679          146 TNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~  164 (235)
                      .-..+.|.|||.+.++.+.
T Consensus       115 ~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen  115 NGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             -EEEEEE-TTSEEEEEEB-
T ss_pred             CCccccCCCCCcEEEEeCC
Confidence            3567999999977666543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=95.57  E-value=0.58  Score=33.77  Aligned_cols=145  Identities=14%  Similarity=0.080  Sum_probs=78.0

Q ss_pred             EEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEec-C--CeEEEEeccCCCCCCceeEe--ecCCCcceeEEEEcc
Q 026679           38 VRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAME-A--GAIKLFDSRSYDKGPFDTFL--VGGDTAEVCDIKFSN  110 (235)
Q Consensus        38 i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~-d--g~v~i~d~~~~~~~~~~~~~--~~~~~~~v~~~~~~~  110 (235)
                      -.+||+.+++....-.....-|  -.+-++|+++.+|+. +  ..+++++.............  .-.....-.....-|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            3478888776543322222222  457789999999875 2  35778876541111100100  001122233455567


Q ss_pred             CCCeEEEecCCCc-EEEEEcCCC-ceeeeecc------CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee
Q 026679          111 DGKSMLLTTTNNN-IYVLDAYGG-EKRCGFSL------EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW  182 (235)
Q Consensus       111 ~~~~l~~~~~d~~-i~~~d~~~~-~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  182 (235)
                      ||+.|+.|+.... ..+|.-+.. .....+..      ......--.+...|+|++++.+..+.  .+||..+.+.+..+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence            9999999888643 344443211 11111100      01111122466789999999988764  46798888776666


Q ss_pred             cC
Q 026679          183 NG  184 (235)
Q Consensus       183 ~~  184 (235)
                      ..
T Consensus       206 P~  207 (243)
T PF07250_consen  206 PD  207 (243)
T ss_pred             CC
Confidence            53

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PRK13684 Ycf48-like protein; Provisional

Probab=95.56  E-value=0.76  Score=35.09  Aligned_cols=153  Identities=16%  Similarity=0.172  Sum_probs=77.6

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEE-EecCcceeeeeeec---cCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRI-WDLRVNACQGILRL---RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~v-wd~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      ...+.++.+.|++.+++++. .|.+.. ++ ..++.-.....   .....+.+.++++.++++ ..|.+.+=....+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            34678888888876665554 455443 22 12221111221   223347888888876665 4566543222222210


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc-CCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-EPSPNTNTEATFTPDGQYVVSGSGDGTL  168 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i  168 (235)
                      .............+..+.+.|++. +++++.+|.+. .....++.-..... ..-+.....+.|..+++.++ .+..|.|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i  325 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL  325 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCC-EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence            000000011123577888998776 45555667554 33344443322221 11223466777776666655 4557777


Q ss_pred             EEEE
Q 026679          169 HAWN  172 (235)
Q Consensus       169 ~v~d  172 (235)
                      .-|+
T Consensus       326 l~~~  329 (334)
T PRK13684        326 LRYV  329 (334)
T ss_pred             EEec
Confidence            7665

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=95.37  E-value=0.69  Score=33.40  Aligned_cols=137  Identities=13%  Similarity=0.124  Sum_probs=77.1

Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-C--CcEEEEEcCC----CceeeeeccCCCCCcceee
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYG----GEKRCGFSLEPSPNTNTEA  150 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~----~~~~~~~~~~~~~~~i~~~  150 (235)
                      -.+||+.+.+..+...    .....+.+-.+.+||+.+.+|+. +  ..+++++...    .........-....+-...
T Consensus        48 s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~  123 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA  123 (243)
T ss_pred             EEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence            4578888766422211    12233444567889999998876 2  3488888654    1111100000112233345


Q ss_pred             EEeCCCcEEEEeCCCC-cEEEEEcCC-Cceeeee---c-----CCCcceeEEEeecCCCEEEEcccceEEeeCCCCCC
Q 026679          151 TFTPDGQYVVSGSGDG-TLHAWNINT-RNEVACW---N-----GNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSN  218 (235)
Q Consensus       151 ~~~~~~~~l~~~~~dg-~i~v~d~~~-~~~~~~~---~-----~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~~  218 (235)
                      ..-|||+.|+.|+... ...+|.-+. ......+   .     ....-...+...|+|++++.+...-.|||....+.
T Consensus       124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v  201 (243)
T PF07250_consen  124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTV  201 (243)
T ss_pred             eECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeE
Confidence            5567999999988764 344555321 1111111   1     01122335667899999999997788899987754

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.36  E-value=0.0025  Score=49.31  Aligned_cols=138  Identities=18%  Similarity=0.234  Sum_probs=90.6

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEE-EEecCCeEEEEeccCCCCCCcee
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDT   93 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~   93 (235)
                      .-....|-|.+.-++.++.+..+..||- .++............ ++|+.++..++ .+-..+.+.+||+.+.....   
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq---  111 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---  111 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---
Confidence            3345578888777888888888989984 444444443333333 78888776554 45567899999998754311   


Q ss_pred             EeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           94 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      ....+ ...-.-+.|++.+..++.+...+.+.+++..+.+...  ....|...++++++.+.+..+.
T Consensus       112 LE~gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii--v~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  112 LESGG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII--VMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             HhccC-cchHHHHhhccCCccccccccccceEEEeccchhhhh--hhcccccceeEEEecccceeee
Confidence            11111 1112226899988889999899999999987765443  3333556688899988765443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.35  E-value=1  Score=38.19  Aligned_cols=73  Identities=15%  Similarity=0.271  Sum_probs=48.5

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCC---------CCC-CceeEe------ecCCCcceeEEEEccC---CCeEEEecC
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSY---------DKG-PFDTFL------VGGDTAEVCDIKFSND---GKSMLLTTT  120 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~---------~~~-~~~~~~------~~~~~~~v~~~~~~~~---~~~l~~~~~  120 (235)
                      +.++|+|.+++..+..|...+.=.+..         +.. ......      .......|..+.|+|.   +.+|++-..
T Consensus        90 i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLts  169 (717)
T PF10168_consen   90 ISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTS  169 (717)
T ss_pred             EEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEec
Confidence            788999999999888665444322211         100 000111      1233457889999995   588999999


Q ss_pred             CCcEEEEEcCCC
Q 026679          121 NNNIYVLDAYGG  132 (235)
Q Consensus       121 d~~i~~~d~~~~  132 (235)
                      |+.+++||+...
T Consensus       170 dn~lR~y~~~~~  181 (717)
T PF10168_consen  170 DNTLRLYDISDP  181 (717)
T ss_pred             CCEEEEEecCCC
Confidence            999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.33  E-value=0.91  Score=34.54  Aligned_cols=147  Identities=18%  Similarity=0.243  Sum_probs=86.0

Q ss_pred             ccceeEEEeecCCCeeEEEeccce------EEEEecCc--c--ee---eee--eecc----------CCceEEEcCCCCE
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHS------VRIWDLRV--N--AC---QGI--LRLR----------GRPTVAFDQQGLV   68 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~------i~vwd~~~--~--~~---~~~--~~~~----------~~~~~~~~~~~~~   68 (235)
                      -+.+..+.+.+++..+++.+.+|.      +...++..  +  ..   ...  +...          ....+++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356788999976777777788887      65555543  1  01   111  1111          1123777777877


Q ss_pred             EEEEecC------CeEEEEeccCCCCCC-c---eeE-------eecCCCcceeEEEEccCCCeEEEecC-----CC----
Q 026679           69 FAVAMEA------GAIKLFDSRSYDKGP-F---DTF-------LVGGDTAEVCDIKFSNDGKSMLLTTT-----NN----  122 (235)
Q Consensus        69 l~~~~~d------g~v~i~d~~~~~~~~-~---~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~----  122 (235)
                      +++.-.+      ..|..++.. +.... .   ..+       .....+...-+++++|+|+.|+++.+     |+    
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7777667      788888865 22211 0   001       11234567889999999997776543     22    


Q ss_pred             -------cEEEEEcCC-Cceee--eeccCC-----CCCcceeeEEeCCCcEEEE
Q 026679          123 -------NIYVLDAYG-GEKRC--GFSLEP-----SPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus       123 -------~i~~~d~~~-~~~~~--~~~~~~-----~~~~i~~~~~~~~~~~l~~  161 (235)
                             .|..||..+ ++...  .+....     ....+..+.+-+++++|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                   244456554 32222  333332     3466888999999997764

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.30  E-value=1  Score=40.00  Aligned_cols=161  Identities=16%  Similarity=0.175  Sum_probs=90.1

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceE----------EEcCCCCEEEEEecCCeEEEEe
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV----------AFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      |...-+.+-+-|.=++ +-.+.|..+.+|+.+++.....+..-...++          .|.|.=+++++-..--.|.++-
T Consensus        77 ~~~~~~~mGiFpeI~R-aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg  155 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGR-AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG  155 (1311)
T ss_pred             Ccceeeeeccchhhcc-eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence            3333344445553222 2234588999999998776666655443331          1223334445545555566654


Q ss_pred             ccCCCC----CC-ceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEc--CCC---c-ee--------------ee
Q 026679           83 SRSYDK----GP-FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA--YGG---E-KR--------------CG  137 (235)
Q Consensus        83 ~~~~~~----~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~--~~~---~-~~--------------~~  137 (235)
                      +.-.+.    .. ...+........|.++....+|+.++ ++.||.|+-.-.  ..+   + +.              ..
T Consensus       156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~  234 (1311)
T KOG1900|consen  156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL  234 (1311)
T ss_pred             EEeccccCcccccccceeeecCCceEEEEEeccCCcEEE-eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence            432211    11 11233334456788998777887555 555664432211  111   0 00              00


Q ss_pred             eccC-CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679          138 FSLE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT  175 (235)
Q Consensus       138 ~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  175 (235)
                      .... .+..+|..++.....+.+.+-++.|.|.+||+..
T Consensus       235 ~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  235 LSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            1122 3446799999998888999999999999999965

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.25  E-value=0.79  Score=33.38  Aligned_cols=127  Identities=13%  Similarity=0.229  Sum_probs=77.2

Q ss_pred             EeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCC---cceeEEEE
Q 026679           32 GSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT---AEVCDIKF  108 (235)
Q Consensus        32 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~---~~v~~~~~  108 (235)
                      .-.++...+||.++.+.+..+..... -.-+..+++.|+.+.....+..+|..+.+...  ........   ..++.+.|
T Consensus       106 TWk~~~~f~yd~~tl~~~~~~~y~~E-GWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~--~i~V~~~g~pv~~LNELE~  182 (264)
T PF05096_consen  106 TWKEGTGFVYDPNTLKKIGTFPYPGE-GWGLTSDGKRLIMSDGSSRLYFLDPETFKEVR--TIQVTDNGRPVSNLNELEY  182 (264)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEE-SSS---EEEECSSCEEEE-SSSEEEEE-TTT-SEEE--EEE-EETTEE---EEEEEE
T ss_pred             EecCCeEEEEccccceEEEEEecCCc-ceEEEcCCCEEEEECCccceEEECCcccceEE--EEEEEECCEECCCcEeEEE
Confidence            34578899999998888888876542 22223677788888888899999988765422  22222222   24556666


Q ss_pred             ccCCCeEEEecCCCcEEEEEcCCCceeeeeccC-------------CCCCcceeeEEeCCCcEE-EEe
Q 026679          109 SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE-------------PSPNTNTEATFTPDGQYV-VSG  162 (235)
Q Consensus       109 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l-~~~  162 (235)
                      . +|...|=.-....|...|..+|+....+.+.             ....-.+.+++.|..+.| ++|
T Consensus       183 i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  183 I-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             E-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             E-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            5 6666665666778999999999887654321             113457889999865555 444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.05  E-value=0.53  Score=30.29  Aligned_cols=113  Identities=10%  Similarity=0.110  Sum_probs=61.3

Q ss_pred             EEcCCCCEEEEEecCCeEEEEeccCCCCCC---ceeEeecCCCcceeEEEEcc-----CCCeEEEecCCCcEEEEEcCCC
Q 026679           61 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGP---FDTFLVGGDTAEVCDIKFSN-----DGKSMLLTTTNNNIYVLDAYGG  132 (235)
Q Consensus        61 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~---~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~  132 (235)
                      .|......|++++.-|.|.+++........   .....+..-...|++++-.+     +...|+.|+ ...+..||+...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence            444555567777777788888765432110   00111122335566665433     234455554 556999999887


Q ss_pred             ceeeeeccCCCCCcceeeEEeC---CCcEEEEeCCCCcEEEEEcCCCc
Q 026679          133 EKRCGFSLEPSPNTNTEATFTP---DGQYVVSGSGDGTLHAWNINTRN  177 (235)
Q Consensus       133 ~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~~~  177 (235)
                      ..+.-...+   ..+.++.+-.   ...-|+..+.+..|.-||....+
T Consensus        84 ~d~Fyke~~---DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   84 SDLFYKEVP---DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             chhhhhhCc---cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            665433333   3366666532   22334444456677777764433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.04  E-value=1.3  Score=34.70  Aligned_cols=150  Identities=13%  Similarity=0.137  Sum_probs=74.1

Q ss_pred             eeEEEeecCCCeeEEEeccceEEEEecCcc--eeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCC---Cc
Q 026679           17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG---PF   91 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~---~~   91 (235)
                      ...+..++++.+++.+..-..++-||-...  +.+..-.......+.+.+++..++++ ..|.+.. ....+...   ..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence            344556677766666544322333432110  11211112223347788888877666 4555433 22222211   11


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec-cCCCCCcceeeEEeCCCcEEEEeCCCCcEEE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLHA  170 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  170 (235)
                      ...........+..+.|.+++. +++++..|.+.... ..++.-.... ...-......+.|.++++.+++| .+|.|.-
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~  395 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR  395 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence            1111111224588899998776 55566677665553 3444322222 12223457789988776666555 5676654


Q ss_pred             E
Q 026679          171 W  171 (235)
Q Consensus       171 ~  171 (235)
                      |
T Consensus       396 ~  396 (398)
T PLN00033        396 Y  396 (398)
T ss_pred             e
Confidence            4

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.03  E-value=0.15  Score=25.18  Aligned_cols=40  Identities=20%  Similarity=0.225  Sum_probs=27.6

Q ss_pred             CCCcEEEEeC-CCCcEEEEEcCCCceeeeecCCCcceeEEEe
Q 026679          154 PDGQYVVSGS-GDGTLHAWNINTRNEVACWNGNIGVVACLKW  194 (235)
Q Consensus       154 ~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~  194 (235)
                      |++++|+++. .++.|.++|..+++.+..+... .....+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            5677666544 5789999999988888777652 33445544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=95.00  E-value=0.17  Score=41.42  Aligned_cols=73  Identities=15%  Similarity=0.277  Sum_probs=45.1

Q ss_pred             cCCCeEEEecCCCcEEEEEcCC----CceeeeeccC--------------------CCCCcceeeEEeC----CCcEEEE
Q 026679          110 NDGKSMLLTTTNNNIYVLDAYG----GEKRCGFSLE--------------------PSPNTNTEATFTP----DGQYVVS  161 (235)
Q Consensus       110 ~~~~~l~~~~~d~~i~~~d~~~----~~~~~~~~~~--------------------~~~~~i~~~~~~~----~~~~l~~  161 (235)
                      ++...++.+..||.+.......    +.........                    ........+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3677888899999988888764    2111111100                    1123345566666    6789999


Q ss_pred             eCCCCcEEEEEcCCCceeeee
Q 026679          162 GSGDGTLHAWNINTRNEVACW  182 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~  182 (235)
                      .+.|+.+++||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999985544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.94  E-value=1.4  Score=34.54  Aligned_cols=108  Identities=16%  Similarity=0.178  Sum_probs=64.5

Q ss_pred             CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-----eeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcC
Q 026679          100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-----KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN  174 (235)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  174 (235)
                      ...+..+.+.+++..++++ ..|.+.. ....++     .............+..+.|.+++..+++| ..|.+.... .
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D  355 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-D  355 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-C
Confidence            4568889999998866554 5565543 333333     12222222222457889999887766555 567665543 3


Q ss_pred             CCceeeee---cCCCcceeEEEeecCCCEEEEcc-cceEEe
Q 026679          175 TRNEVACW---NGNIGVVACLKWAPRRAMFVAAS-SVLSFW  211 (235)
Q Consensus       175 ~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw  211 (235)
                      .++.-...   ..-....+.+.|.++++.+++|. |.|.-|
T Consensus       356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             CCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            44432222   22345788999988888888887 665443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.92  E-value=0.74  Score=36.79  Aligned_cols=72  Identities=10%  Similarity=0.125  Sum_probs=45.7

Q ss_pred             cceeeEEeCCCcEEEEeCCCCcEEEEEc---------CCCceeeee-----------cCCCcceeEEEeecCC----CEE
Q 026679          146 TNTEATFTPDGQYVVSGSGDGTLHAWNI---------NTRNEVACW-----------NGNIGVVACLKWAPRR----AMF  201 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~---------~~~~~~~~~-----------~~~~~~v~~~~~~~~~----~~l  201 (235)
                      .|..+..++.|..++..+.+|.+.++=.         ++|+..-..           ....-.+..++|+|+.    .++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            3566778999999999999997655431         233321111           1112356788999965    344


Q ss_pred             EEc-ccceEEeeCCCCC
Q 026679          202 VAA-SSVLSFWIPNPSS  217 (235)
Q Consensus       202 ~~~-~~~i~iw~~~~~~  217 (235)
                      +-. ...+++|+.....
T Consensus       185 iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEecCcEEEEEecCCcc
Confidence            444 4889999986544

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=94.87  E-value=1.3  Score=33.67  Aligned_cols=98  Identities=10%  Similarity=0.067  Sum_probs=48.5

Q ss_pred             CCCEEEEEec-----CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC----cEEEEEcCCCcee
Q 026679           65 QGLVFAVAME-----AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN----NIYVLDAYGGEKR  135 (235)
Q Consensus        65 ~~~~l~~~~~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~  135 (235)
                      ++++++.|+.     ...+..||+.+.+......  +... ......+...+++..+.|+.++    .+..||..+.+..
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~--~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD--FPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC--CCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence            5677777764     2467888887755421111  1111 1111222234566777777653    3568898876654


Q ss_pred             eeeccCC--CCCcc-eee-EEeCCCcEEEEeCCC
Q 026679          136 CGFSLEP--SPNTN-TEA-TFTPDGQYVVSGSGD  165 (235)
Q Consensus       136 ~~~~~~~--~~~~i-~~~-~~~~~~~~l~~~~~d  165 (235)
                      ..-....  .+... ... ....++++++.|+.+
T Consensus       200 ~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       200 KVADPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             ECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence            3222110  11111 111 122356778888865

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.84  E-value=0.1  Score=43.98  Aligned_cols=139  Identities=13%  Similarity=0.217  Sum_probs=80.1

Q ss_pred             CCeEEEEeccCCCC--CCceeE-eecCCCcceeEEEEcc---CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679           75 AGAIKLFDSRSYDK--GPFDTF-LVGGDTAEVCDIKFSN---DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT  148 (235)
Q Consensus        75 dg~v~i~d~~~~~~--~~~~~~-~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~  148 (235)
                      -|...+||+.-.+.  .+.... ........+.-+.|.|   +.-++..+..++.+++........ ..+..  |...+.
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs--Hs~~~~  228 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRS--HSQRVT  228 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHh--cCCCcc
Confidence            46788998764332  221111 1222223344455554   566777788889988877654332 22222  322233


Q ss_pred             ee-----------EEeCCCcEEEEeCCCCcEEEEEcC-----CCceeeeecCCCc-ceeEEEeecC---------CCEEE
Q 026679          149 EA-----------TFTPDGQYVVSGSGDGTLHAWNIN-----TRNEVACWNGNIG-VVACLKWAPR---------RAMFV  202 (235)
Q Consensus       149 ~~-----------~~~~~~~~l~~~~~dg~i~v~d~~-----~~~~~~~~~~~~~-~v~~~~~~~~---------~~~l~  202 (235)
                      .+           ..||||..++++..||.+++|.+.     .-++++.++.|.+ +-.|.-|+.+         -.+++
T Consensus       229 d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~I  308 (1283)
T KOG1916|consen  229 DMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRI  308 (1283)
T ss_pred             cHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEE
Confidence            22           379999999999999998877653     4456677777763 3333334432         13455


Q ss_pred             Ecc---cceEEeeCCCC
Q 026679          203 AAS---SVLSFWIPNPS  216 (235)
Q Consensus       203 ~~~---~~i~iw~~~~~  216 (235)
                      +++   ..+++|.....
T Consensus       309 tttd~nre~k~w~~a~w  325 (1283)
T KOG1916|consen  309 TTTDVNREEKFWAEAPW  325 (1283)
T ss_pred             ecccCCcceeEeeccch
Confidence            555   44888876543

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=94.76  E-value=1.6  Score=34.50  Aligned_cols=30  Identities=13%  Similarity=0.498  Sum_probs=24.9

Q ss_pred             cceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679          146 TNTEATFTPDGQYVVSGSGDGTLHAWNINT  175 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  175 (235)
                      .|..++..+..+.|++.+.+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            388899999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.72  E-value=2.2  Score=35.76  Aligned_cols=173  Identities=9%  Similarity=0.126  Sum_probs=79.5

Q ss_pred             eEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCe
Q 026679           37 SVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS  114 (235)
Q Consensus        37 ~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  114 (235)
                      .|+|++. +|+.+..+.-.....  +.|+.+. .|++...+|.+++|++-....... ..-.......|..+.+..+|  
T Consensus        65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~~G--  139 (829)
T KOG2280|consen   65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFHNG--  139 (829)
T ss_pred             eEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhccc-ccccccccCceeEEEEecCc--
Confidence            4777775 565555544333333  6666554 566778999999999876443221 11112223345555555555  


Q ss_pred             EEEecCCCcEEEEEcCCCceeeeecc-CCCCCcceeeEEeCCCc---EEEEeC-CCCcEEEEEcCCCc-eeeeecCCCcc
Q 026679          115 MLLTTTNNNIYVLDAYGGEKRCGFSL-EPSPNTNTEATFTPDGQ---YVVSGS-GDGTLHAWNINTRN-EVACWNGNIGV  188 (235)
Q Consensus       115 l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~---~l~~~~-~dg~i~v~d~~~~~-~~~~~~~~~~~  188 (235)
                      +++-..+|.+.+-.-........+.. +....+-.+-..-+++.   .++-.. ..+ ..++...... ....+....+.
T Consensus       140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~  218 (829)
T KOG2280|consen  140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS  218 (829)
T ss_pred             eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence            44444555555543222211222111 11111111111112211   111111 111 1122221111 11222222467


Q ss_pred             eeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          189 VACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       189 v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      +..+..||+.++|+--.  |.+.+-+.+.
T Consensus       219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~  247 (829)
T KOG2280|consen  219 VVKISVSPNRRFLALYTETGKIWVVSIDL  247 (829)
T ss_pred             EEEEEEcCCcceEEEEecCCcEEEEecch
Confidence            88899999999988776  5555544444

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.71  E-value=1.4  Score=33.58  Aligned_cols=103  Identities=14%  Similarity=0.147  Sum_probs=51.3

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee-eccC-----C---ceEEEcCC----CCEEEEEecC-------
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL-RLRG-----R---PTVAFDQQ----GLVFAVAMEA-------   75 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~-----~---~~~~~~~~----~~~l~~~~~d-------   75 (235)
                      .-+.|+|.|+|+.+++ ...|.|++++ ..+.....+ ....     .   .-++++|+    +.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999877665 5599999999 444431111 1111     1   12889984    4444433321       


Q ss_pred             -CeEEEEeccCCCCC--Cc-eeE-eec---CCCcceeEEEEccCCCeEEEecC
Q 026679           76 -GAIKLFDSRSYDKG--PF-DTF-LVG---GDTAEVCDIKFSNDGKSMLLTTT  120 (235)
Q Consensus        76 -g~v~i~d~~~~~~~--~~-~~~-~~~---~~~~~v~~~~~~~~~~~l~~~~~  120 (235)
                       ..|.-|........  .. ... ...   ........+.|.|||.+.++.+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence             23444444433110  00 011 111   22345567999999976666554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK13684 Ycf48-like protein; Provisional

Probab=94.58  E-value=1.6  Score=33.43  Aligned_cols=147  Identities=15%  Similarity=0.084  Sum_probs=80.3

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS  139 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  139 (235)
                      +.+.|++.+++++ ..|.+..- ......  ............+..+.+.++++.+++ +..|.+.+=....+..-....
T Consensus       178 i~~~~~g~~v~~g-~~G~i~~s-~~~gg~--tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~~~~  252 (334)
T PRK13684        178 LRRSPDGKYVAVS-SRGNFYST-WEPGQT--AWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWSKPI  252 (334)
T ss_pred             EEECCCCeEEEEe-CCceEEEE-cCCCCC--eEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcccccc
Confidence            6777877655444 44544431 111110  011122234467889999999886555 456766432233333222212


Q ss_pred             cC--CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec---CCCcceeEEEeecCCCEEEEcc-cceEEeeC
Q 026679          140 LE--PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS-SVLSFWIP  213 (235)
Q Consensus       140 ~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~  213 (235)
                      .+  .....+..+.+.|++..++++ .+|.+. .....++.-....   .-....+.+.|..+++.+++|. |.|--|+-
T Consensus       253 ~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~  330 (334)
T PRK13684        253 IPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG  330 (334)
T ss_pred             CCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence            11  112346778899987765554 566554 3444444333322   2223578888888888888887 77776654

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=94.16  E-value=0.46  Score=39.95  Aligned_cols=141  Identities=13%  Similarity=0.043  Sum_probs=83.0

Q ss_pred             CEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce---eeeeccCCC
Q 026679           67 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK---RCGFSLEPS  143 (235)
Q Consensus        67 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~  143 (235)
                      ..+..|+.++.+.++.-...................+.++.+++.  .+..|.-||++-.|--.....   ......+..
T Consensus       548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g  625 (925)
T KOG3522|consen  548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTG  625 (925)
T ss_pred             CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCCccccccC
Confidence            357788888999988766332222222222233455666666543  355555566655543211100   011112233


Q ss_pred             CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec---CCCcceeEEEeecCCCEEEEcccc-eEEee
Q 026679          144 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAASSV-LSFWI  212 (235)
Q Consensus       144 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~-i~iw~  212 (235)
                      ..++...++..|   ++.++.+|.+.++...+........   .|...|+++....++-+++.++|+ ++.++
T Consensus       626 ~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfh  695 (925)
T KOG3522|consen  626 SLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFH  695 (925)
T ss_pred             Cccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEec
Confidence            356777777655   5667789999999987654444333   345689999999999999988866 45443

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.13  E-value=0.98  Score=35.52  Aligned_cols=154  Identities=11%  Similarity=0.080  Sum_probs=87.6

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEee-cC-CCccee-EEEEccCCCeEEEecCCCcEEEE-EcCCCcee
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-GG-DTAEVC-DIKFSNDGKSMLLTTTNNNIYVL-DAYGGEKR  135 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~-~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~-d~~~~~~~  135 (235)
                      +-..|+|+.+..-+. .++.++++.+........... .+ ....|+ .+..-..|..+++.+.||-|.-| |.+.+...
T Consensus       226 llL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p  304 (733)
T COG4590         226 LLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQP  304 (733)
T ss_pred             hEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCC
Confidence            567889998877665 678888876644321111110 00 011222 22223356668888889888766 55543221


Q ss_pred             -----eeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceE
Q 026679          136 -----CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLS  209 (235)
Q Consensus       136 -----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~  209 (235)
                           ..+++.+  ..+.-+.-..+.+-+++-...|++.++.....+.+.. +.--..+.-++++|.+.++++-. |.++
T Consensus       305 ~l~h~R~f~l~p--a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~Ll~e~~gki~  381 (733)
T COG4590         305 HLNHIRNFKLAP--AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYLLSEDQGKIR  381 (733)
T ss_pred             cceeeeccccCc--ccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchheeecCCceE
Confidence                 1112211  2222222222345567777888888777544443322 22223567789999999999988 8899


Q ss_pred             EeeCCCCC
Q 026679          210 FWIPNPSS  217 (235)
Q Consensus       210 iw~~~~~~  217 (235)
                      ++.++...
T Consensus       382 ~~~l~Nr~  389 (733)
T COG4590         382 LAQLENRN  389 (733)
T ss_pred             EEEecCCC
Confidence            99887643

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.10  E-value=0.57  Score=38.45  Aligned_cols=76  Identities=11%  Similarity=0.171  Sum_probs=45.1

Q ss_pred             CCCCEEEEEecCCeEEEEeccCCC-CCCceeEee---------------------cCCCcceeEEEEcc----CCCeEEE
Q 026679           64 QQGLVFAVAMEAGAIKLFDSRSYD-KGPFDTFLV---------------------GGDTAEVCDIKFSN----DGKSMLL  117 (235)
Q Consensus        64 ~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~---------------------~~~~~~v~~~~~~~----~~~~l~~  117 (235)
                      ++...++++..||.+......... .........                     .........+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            367788888899988888766411 000000000                     01123455566666    6788999


Q ss_pred             ecCCCcEEEEEcCCCceeeeec
Q 026679          118 TTTNNNIYVLDAYGGEKRCGFS  139 (235)
Q Consensus       118 ~~~d~~i~~~d~~~~~~~~~~~  139 (235)
                      .+.|+.+++||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999866543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.10  E-value=2.1  Score=33.13  Aligned_cols=188  Identities=14%  Similarity=0.200  Sum_probs=104.9

Q ss_pred             cCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EE--EcCCCCE--EEEEe-cC---CeEEEEeccCCCCCCcee
Q 026679           24 PVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VA--FDQQGLV--FAVAM-EA---GAIKLFDSRSYDKGPFDT   93 (235)
Q Consensus        24 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~--~~~~~~~--l~~~~-~d---g~v~i~d~~~~~~~~~~~   93 (235)
                      |...+++....++-+.+||++ |+.++.+.....+-  +.  |.-.++.  |++++ .+   ..|++|.+..... .+..
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g-~L~~  143 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG-ELTD  143 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT-EEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC-cceE
Confidence            345678888888999999985 55555554333222  22  2224443  34443 32   4799998864221 1111


Q ss_pred             Ee-----ecCCCcceeEEEE--cc-CCC-eEEEecCCCcEEEEEcC---CC----ceeeeeccCCCCCcceeeEEeCCCc
Q 026679           94 FL-----VGGDTAEVCDIKF--SN-DGK-SMLLTTTNNNIYVLDAY---GG----EKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        94 ~~-----~~~~~~~v~~~~~--~~-~~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      ..     +......+..+++  +| +|. +.+....+|.+..|.+.   .+    +.++.+...   ..+..|.......
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~---sQ~EGCVVDDe~g  220 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG---SQPEGCVVDDETG  220 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S---S-EEEEEEETTTT
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC---CcceEEEEecccC
Confidence            10     1111234666766  33 344 55567788988888774   22    345555553   3478899999888


Q ss_pred             EEEEeCCCCcEEEEEcCC-----CceeeeecC--CCcceeEEEeec--CC-CEEEEcc---cceEEeeCCCC
Q 026679          158 YVVSGSGDGTLHAWNINT-----RNEVACWNG--NIGVVACLKWAP--RR-AMFVAAS---SVLSFWIPNPS  216 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~-----~~~~~~~~~--~~~~v~~~~~~~--~~-~~l~~~~---~~i~iw~~~~~  216 (235)
                      +|+.+-++--|.-|+.+.     ++.+....+  ....|..|+...  ++ .||++++   +...||+.+..
T Consensus       221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            999999998788887752     222322222  345778888764  33 4677766   56999998653

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.99  E-value=1.1  Score=35.98  Aligned_cols=81  Identities=15%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             cceeEEEEccCCCeEEEecCCCcEEEEEcC---------CCceeeee---------ccCCCCCcceeeEEeCCC---cEE
Q 026679          101 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAY---------GGEKRCGF---------SLEPSPNTNTEATFTPDG---QYV  159 (235)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~---------~~~~~~~~---------~~~~~~~~i~~~~~~~~~---~~l  159 (235)
                      ..|..+..++.|..++..+.+|.+.++=.+         +++.....         ......-.+..++|+|+.   ..|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            357778889999999999999876665422         22211110         111112345668899964   677


Q ss_pred             EEeCCCCcEEEEEcCCCceeee
Q 026679          160 VSGSGDGTLHAWNINTRNEVAC  181 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~~~~~~  181 (235)
                      ..-+.|..|++||+...+.+..
T Consensus       184 ~iL~sdnviRiy~lS~~telyl  205 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTELYL  205 (741)
T ss_pred             EEEecCcEEEEEecCCcchhhc
Confidence            7778899999999977665533

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.91  E-value=2.8  Score=33.84  Aligned_cols=145  Identities=13%  Similarity=0.050  Sum_probs=71.8

Q ss_pred             ccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCC-cceeEEEEcc
Q 026679           34 LDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEVCDIKFSN  110 (235)
Q Consensus        34 ~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~  110 (235)
                      ..+...+.|. .|..+..+.......  +...++|.+++...  ..+..+|.....   .....+.... ..=..+...|
T Consensus       126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v---~~~~~l~~~~~~~HHD~~~l~  199 (477)
T PF05935_consen  126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV---IWEYDLPGGYYDFHHDIDELP  199 (477)
T ss_dssp             BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E---EEEEE--TTEE-B-S-EEE-T
T ss_pred             CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE---EEeeecCCcccccccccEECC
Confidence            4556777774 566666655544433  66778888776655  677777764321   1122222211 1123566788


Q ss_pred             CCCeEEEecC-------------CCcEEEEEcCCCceeeeeccCCCC-------------------------CcceeeEE
Q 026679          111 DGKSMLLTTT-------------NNNIYVLDAYGGEKRCGFSLEPSP-------------------------NTNTEATF  152 (235)
Q Consensus       111 ~~~~l~~~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~-------------------------~~i~~~~~  152 (235)
                      +|++|+.+..             ...|..+| .+|+.+..+....+-                         -.+.++.+
T Consensus       200 nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y  278 (477)
T PF05935_consen  200 NGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY  278 (477)
T ss_dssp             TS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred             CCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence            8988887762             22355666 666655443221110                         23677888


Q ss_pred             eC-CCcEEEEeCCCCcEEEEEcCCCceeeeecCC
Q 026679          153 TP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGN  185 (235)
Q Consensus       153 ~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  185 (235)
                      .+ ++.+|+++-.-..|...|.++++..-.+-.+
T Consensus       279 d~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  279 DPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             ETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             eCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            88 6666666666668888898888776555433

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=93.62  E-value=2.2  Score=31.66  Aligned_cols=115  Identities=16%  Similarity=0.193  Sum_probs=64.6

Q ss_pred             CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec------CCCcEEEEEcCCCceeeeecc--CCCCCcc
Q 026679           76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT------TNNNIYVLDAYGGEKRCGFSL--EPSPNTN  147 (235)
Q Consensus        76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~--~~~~~~i  147 (235)
                      ..+.+||..+.+.    ...-.+-.+.|+.+.|..+.+.++.|.      ....+..||..+......-..  ..-++++
T Consensus        16 ~~lC~yd~~~~qW----~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv   91 (281)
T PF12768_consen   16 PGLCLYDTDNSQW----SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPV   91 (281)
T ss_pred             CEEEEEECCCCEe----ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcE
Confidence            4688999877654    222233557899999986666555553      355688899877654322111  1234667


Q ss_pred             eeeEEeC-CC-cEEEEeC-C--CCcEEEEEcCCCceeee-ecCCCcceeEEEe
Q 026679          148 TEATFTP-DG-QYVVSGS-G--DGTLHAWNINTRNEVAC-WNGNIGVVACLKW  194 (235)
Q Consensus       148 ~~~~~~~-~~-~~l~~~~-~--dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~  194 (235)
                      ..+.+.. |+ ++.+.|. .  +..|..||-.+...+.. .......|..+.+
T Consensus        92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~  144 (281)
T PF12768_consen   92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV  144 (281)
T ss_pred             EEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence            7777643 33 3444443 2  33477777655444433 2222344555544

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.60  E-value=2.9  Score=32.98  Aligned_cols=182  Identities=16%  Similarity=0.186  Sum_probs=96.0

Q ss_pred             CeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCC-----------------
Q 026679           27 DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDK-----------------   88 (235)
Q Consensus        27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-----------------   88 (235)
                      .++..=+.||.+.+++-+.-.....+...-.+. +.+.+....|++++.+..+..|.......                 
T Consensus       146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~  225 (418)
T PF14727_consen  146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS  225 (418)
T ss_pred             eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence            467778999999999966555444554433344 89999999999999998998887532110                 


Q ss_pred             ----CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC----CC---c
Q 026679           89 ----GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP----DG---Q  157 (235)
Q Consensus        89 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~----~~---~  157 (235)
                          .+...+.+...--.+..+.++.....+++-+ ...+.+.+. +|......++...+  .....|..    ++   .
T Consensus       226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G~l~~~krLd~~p--~~~~~Y~~~~~~~~~~~~  301 (418)
T PF14727_consen  226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NGSLRFQKRLDYNP--SCFCPYRVPWYNEPSTRL  301 (418)
T ss_pred             cccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CCeEEEEEecCCce--eeEEEEEeecccCCCCce
Confidence                1111222222222233333333333344333 345666664 45655555554332  11111211    22   2


Q ss_pred             EEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEee---c-CCCEEEEcc-cceEEeeCCC
Q 026679          158 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA---P-RRAMFVAAS-SVLSFWIPNP  215 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~---~-~~~~l~~~~-~~i~iw~~~~  215 (235)
                      .++.++.++.+.||.=.+...-..+  ...+| ++...   . +|-.+.-+. |.+.+-=+-+
T Consensus       302 ~llV~t~t~~LlVy~d~~L~WsA~l--~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  302 NLLVGTHTGTLLVYEDTTLVWSAQL--PHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             EEEEEecCCeEEEEeCCeEEEecCC--CCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            4888999999999974333222222  22222 33332   2 333333333 7666665543

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=93.42  E-value=2.5  Score=31.73  Aligned_cols=69  Identities=14%  Similarity=0.155  Sum_probs=51.5

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC-------ceEEEcCCCCEEEEEecCCeEEEEecc
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-------PTVAFDQQGLVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~dg~v~i~d~~   84 (235)
                      -|+++...++|.+|+|+-.-.+|.+.|-++++.+..+.+...       ...++-.+-+.+-.+..++.|.+||-.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            367778888899999999889999999999998888866621       224444455555555678899999873

>PLN02153 epithiospecifier protein

Probab=93.27  E-value=2.9  Score=32.00  Aligned_cols=154  Identities=6%  Similarity=-0.026  Sum_probs=70.3

Q ss_pred             CCCeeEEEecc-------ceEEEEecCcceeeeeeec---cCC---ceEEEcCCCCEEEEEecC-----CeEEEEeccCC
Q 026679           25 VNDSFMSGSLD-------HSVRIWDLRVNACQGILRL---RGR---PTVAFDQQGLVFAVAMEA-----GAIKLFDSRSY   86 (235)
Q Consensus        25 ~~~~l~s~~~d-------~~i~vwd~~~~~~~~~~~~---~~~---~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~   86 (235)
                      ++.+++.|+.+       ..+.+||+.+.+-...-..   ...   ...+..-++++++.|+.+     ..+.+||+.+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~  111 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN  111 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence            35566666653       2577888776532211111   111   111222256677777753     35778888764


Q ss_pred             CCCCceeEeecC-CCcceeEEEEccCCCeEEEecCC-----------CcEEEEEcCCCceeeeeccCC--CCCcceeeEE
Q 026679           87 DKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTN-----------NNIYVLDAYGGEKRCGFSLEP--SPNTNTEATF  152 (235)
Q Consensus        87 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~~~d~~~~~~~~~~~~~~--~~~~i~~~~~  152 (235)
                      +........... ........+..-+++.++.|+.+           ..+.+||..+.+-...-....  ....-.+++ 
T Consensus       112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~-  190 (341)
T PLN02153        112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA-  190 (341)
T ss_pred             EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE-
Confidence            431111000000 00111111222345666666643           247789988765543211110  000011122 


Q ss_pred             eCCCcEEEEeCCC-------------CcEEEEEcCCCcee
Q 026679          153 TPDGQYVVSGSGD-------------GTLHAWNINTRNEV  179 (235)
Q Consensus       153 ~~~~~~l~~~~~d-------------g~i~v~d~~~~~~~  179 (235)
                      .-+++.++.++.+             ..+.+||..+.+-.
T Consensus       191 ~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~  230 (341)
T PLN02153        191 VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT  230 (341)
T ss_pred             EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence            2356666655432             45888998766543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.25  E-value=0.51  Score=23.17  Aligned_cols=33  Identities=18%  Similarity=0.243  Sum_probs=23.9

Q ss_pred             cCCCeeEEE-eccceEEEEecCcceeeeeeeccC
Q 026679           24 PVNDSFMSG-SLDHSVRIWDLRVNACQGILRLRG   56 (235)
Q Consensus        24 ~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~   56 (235)
                      |++++|+++ ..+++|.++|..+++.+..+....
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~   34 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG   34 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence            566665554 457899999998888877776644

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN02193 nitrile-specifier protein

Probab=93.11  E-value=3.9  Score=33.00  Aligned_cols=150  Identities=11%  Similarity=0.029  Sum_probs=72.1

Q ss_pred             CCeeEEEecc-----ceEEEEecCcceeeeeeec---cCCc--eEEEcCCCCEEEEEecCC-----eEEEEeccCCCCCC
Q 026679           26 NDSFMSGSLD-----HSVRIWDLRVNACQGILRL---RGRP--TVAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGP   90 (235)
Q Consensus        26 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~---~~~~--~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~   90 (235)
                      +.+.+.|+.+     ..+.++|+.+.+-...-..   +...  ..+..-++++++.|+.++     .+..||+.+.+...
T Consensus       229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~  308 (470)
T PLN02193        229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH  308 (470)
T ss_pred             CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence            4455566544     3477788776543221111   1111  122223566777776543     46677776643211


Q ss_pred             ceeEe-ecCCCcceeEEEEccCCCeEEEecCC----CcEEEEEcCCCceeeeeccC--CCCCcceeeEEeCCCcEEEEeC
Q 026679           91 FDTFL-VGGDTAEVCDIKFSNDGKSMLLTTTN----NNIYVLDAYGGEKRCGFSLE--PSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        91 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                      ..... ........ .++ .-+++.++.++.+    ..+.+||+.+.+....-...  ..+....+ +..-++++++.|+
T Consensus       309 ~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~-~~~~~~~iyv~GG  385 (470)
T PLN02193        309 CSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFA-SAAVGKHIVIFGG  385 (470)
T ss_pred             CCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeE-EEEECCEEEEECC
Confidence            10000 00001111 122 2256666666654    45899999887654432211  11111111 2233667778887


Q ss_pred             CC--------------CcEEEEEcCCCce
Q 026679          164 GD--------------GTLHAWNINTRNE  178 (235)
Q Consensus       164 ~d--------------g~i~v~d~~~~~~  178 (235)
                      ..              ..+.+||..+.+-
T Consensus       386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W  414 (470)
T PLN02193        386 EIAMDPLAHVGPGQLTDGTFALDTETLQW  414 (470)
T ss_pred             ccCCccccccCccceeccEEEEEcCcCEE
Confidence            53              2478888876654

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=92.82  E-value=3.5  Score=31.71  Aligned_cols=82  Identities=12%  Similarity=0.191  Sum_probs=44.2

Q ss_pred             CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CCcEEEEEcCCCce---eeeecCCCcceeEEEee
Q 026679          120 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRNE---VACWNGNIGVVACLKWA  195 (235)
Q Consensus       120 ~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~  195 (235)
                      .+|++.-||..+......+   ..-.-.+.++.|||+.+++.+-. -..|+-|=++..+.   .--.++-.+..-.|.-+
T Consensus       197 ~~GRl~~YD~~tK~~~VLl---d~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~  273 (376)
T KOG1520|consen  197 PTGRLFRYDPSTKVTKVLL---DGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRD  273 (376)
T ss_pred             CccceEEecCcccchhhhh---hcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeEC
Confidence            4677888887655432111   11233567999999999887633 22333333332211   11112234455567777


Q ss_pred             cCCCEEEEc
Q 026679          196 PRRAMFVAA  204 (235)
Q Consensus       196 ~~~~~l~~~  204 (235)
                      ++|.+.+.-
T Consensus       274 ~~G~fWVal  282 (376)
T KOG1520|consen  274 STGHFWVAL  282 (376)
T ss_pred             CCCCEEEEE
Confidence            888766554

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=92.68  E-value=5.3  Score=33.43  Aligned_cols=151  Identities=13%  Similarity=0.145  Sum_probs=80.5

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCc-ceeEEEEcc------CCCeEEEecC-C---CcEEEEE
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA-EVCDIKFSN------DGKSMLLTTT-N---NNIYVLD  128 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~~------~~~~l~~~~~-d---~~i~~~d  128 (235)
                      +.+.++++.+++...+|.|.+||.............. .+.. -+.+ .|-+      ...++++.+. +   -..+++.
T Consensus       135 Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~-~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~  212 (670)
T PF10395_consen  135 IKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKL-KSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLSYKLIS  212 (670)
T ss_pred             EEEecCCCEEEEEEcCCcEEEEecccccccccccccc-ccccceehh-hhhcccccccCCceEEEEEEcCCCcEEEEEEE
Confidence            7788999999999999999999993332211111111 1111 1111 2222      2334444444 2   2366777


Q ss_pred             c--CCCceeeeec---cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC-----C-cceeEEEeecC
Q 026679          129 A--YGGEKRCGFS---LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-----I-GVVACLKWAPR  197 (235)
Q Consensus       129 ~--~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----~-~~v~~~~~~~~  197 (235)
                      +  ..... ....   .+.....-..+++. +|.+...  .++.|.+|++...+...++.-.     . ..+.++.--..
T Consensus       213 l~~~~~~~-~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~  288 (670)
T PF10395_consen  213 LSNESSSI-FELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSP  288 (670)
T ss_pred             eccCCcce-EEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCC
Confidence            7  22222 2221   11111111223333 5554444  6779999999888776665422     1 22334433234


Q ss_pred             CCEEEEcccceEEeeCCCC
Q 026679          198 RAMFVAASSVLSFWIPNPS  216 (235)
Q Consensus       198 ~~~l~~~~~~i~iw~~~~~  216 (235)
                      .+.|++..+.|++.|+.-.
T Consensus       289 nRvLLs~~nkIyLld~~~~  307 (670)
T PF10395_consen  289 NRVLLSVNNKIYLLDLKFE  307 (670)
T ss_pred             CeEEEEcCCEEEEEeehhh
Confidence            5777777799999998644

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.55  E-value=5.9  Score=33.65  Aligned_cols=67  Identities=15%  Similarity=0.197  Sum_probs=42.3

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEEecCCeEEEEe
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      ...++++.-+|.++-++.++.||.|++|+....+..+....... ..+.|...|  |++...|..+.-|.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee
Confidence            45678888899999999999999999999865544222221111 113443333  44555555555554

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.42  E-value=4.6  Score=32.05  Aligned_cols=102  Identities=8%  Similarity=0.064  Sum_probs=62.2

Q ss_pred             CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCc-ee
Q 026679           57 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KR  135 (235)
Q Consensus        57 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~  135 (235)
                      +.++.|++|.+.+|+--.+.+|.+++....+...............|..+.|+.+ .-++.....| +-+|.....+ .+
T Consensus        69 I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrsl  146 (657)
T KOG2377|consen   69 IKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSL  146 (657)
T ss_pred             eeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhh
Confidence            4459999999999999999999999985444322223333334456888999876 4456555544 5555543221 11


Q ss_pred             eeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679          136 CGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus       136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      +.  ...+...|.-..|.++.+.++.+
T Consensus       147 Rl--Vks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  147 RL--VKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             hh--hhhcccCccEEEEccccceEeee
Confidence            11  12233446667777776655433

>PLN02153 epithiospecifier protein

Probab=92.32  E-value=4.1  Score=31.24  Aligned_cols=152  Identities=12%  Similarity=0.021  Sum_probs=69.9

Q ss_pred             CCeeEEEecc-----ceEEEEecCcceee--eeeec---cCCce--EEEcCCCCEEEEEecC-----------CeEEEEe
Q 026679           26 NDSFMSGSLD-----HSVRIWDLRVNACQ--GILRL---RGRPT--VAFDQQGLVFAVAMEA-----------GAIKLFD   82 (235)
Q Consensus        26 ~~~l~s~~~d-----~~i~vwd~~~~~~~--~~~~~---~~~~~--~~~~~~~~~l~~~~~d-----------g~v~i~d   82 (235)
                      +++++.|+.+     ..+.+||..+.+-.  ..+..   +....  .+..-++++++.|+.+           ..+.+||
T Consensus        86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd  165 (341)
T PLN02153         86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN  165 (341)
T ss_pred             CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence            4555666643     24677887765322  11110   11111  2223356777777753           2467788


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-------------CCcEEEEEcCCCceeeeeccCCCCCc-ce
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-------------NNNIYVLDAYGGEKRCGFSLEPSPNT-NT  148 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~~~-i~  148 (235)
                      ..+.................-.+++. -+++.++.++.             ...+.+||+.+.+-...-.....+.+ ..
T Consensus       166 ~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~  244 (341)
T PLN02153        166 IADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSV  244 (341)
T ss_pred             CCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcce
Confidence            77654311111000000111111222 24555555442             24588999887765533211110111 11


Q ss_pred             eeEEeCCCcEEEEeCCC--------------CcEEEEEcCCCce
Q 026679          149 EATFTPDGQYVVSGSGD--------------GTLHAWNINTRNE  178 (235)
Q Consensus       149 ~~~~~~~~~~l~~~~~d--------------g~i~v~d~~~~~~  178 (235)
                      ..+...++++++.|+..              ..+..||..+.+-
T Consensus       245 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W  288 (341)
T PLN02153        245 FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW  288 (341)
T ss_pred             eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence            11222356777888752              2577888866543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.24  E-value=2.6  Score=35.58  Aligned_cols=62  Identities=18%  Similarity=0.319  Sum_probs=40.3

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEE
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD  128 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  128 (235)
                      +.-+|.+..++.+..||++.+|+..........     ....+-..+.|...|  |++...|..+.-|.
T Consensus        20 iqshp~~~s~v~~~~d~si~lfn~~~r~qski~-----~~~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   20 IQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC-----EEAKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             eeecCCCceEEEEecCCcEEEEeecccchhhhh-----hhcCCccceeeeccc--eEEEeccchhheee
Confidence            667899999999999999999997654321111     112233445555444  66666777777776

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=92.22  E-value=6.2  Score=33.08  Aligned_cols=165  Identities=13%  Similarity=0.144  Sum_probs=85.1

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeee--eeeccCCceEEEc------C---CCCEEEEEec-C---CeE
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG--ILRLRGRPTVAFD------Q---QGLVFAVAME-A---GAI   78 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~------~---~~~~l~~~~~-d---g~v   78 (235)
                      .+.|-.+.|.++++.+++.-..|.|.+||...+....  .+......-+.++      .   ...++++.+. +   -..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            4678899999999999999999999999994332222  2221111112221      1   1234433333 2   256


Q ss_pred             EEEeccCCCCCCceeEe-ecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc--ceeeEEe-
Q 026679           79 KLFDSRSYDKGPFDTFL-VGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT--NTEATFT-  153 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--i~~~~~~-  153 (235)
                      +++.+..... +..... ...+........|.- +|. |..- .+++|.+|++..-+....+....--..  -..+.+. 
T Consensus       209 kL~~l~~~~~-~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~  285 (670)
T PF10395_consen  209 KLISLSNESS-SIFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP  285 (670)
T ss_pred             EEEEeccCCc-ceEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence            7777722221 111111 011122223333333 444 3333 778999999988877766665421111  1112332 


Q ss_pred             CCCcEEEEeCCCCcEEEEEcCCCceeeee
Q 026679          154 PDGQYVVSGSGDGTLHAWNINTRNEVACW  182 (235)
Q Consensus       154 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  182 (235)
                      |..+.++.+. ++.|++.|+.-...+.++
T Consensus       286 ~s~nRvLLs~-~nkIyLld~~~~siLse~  313 (670)
T PF10395_consen  286 PSPNRVLLSV-NNKIYLLDLKFESILSEF  313 (670)
T ss_pred             CCCCeEEEEc-CCEEEEEeehhhhhhhhh
Confidence            2333333332 457999998655444444

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.22  E-value=3.8  Score=30.63  Aligned_cols=169  Identities=12%  Similarity=0.192  Sum_probs=85.8

Q ss_pred             eEEEEecCcceeeeeeeccCCc--------eEEEcCCC-----CEEEEE-ecCCeEEEEeccCCCCCCce----------
Q 026679           37 SVRIWDLRVNACQGILRLRGRP--------TVAFDQQG-----LVFAVA-MEAGAIKLFDSRSYDKGPFD----------   92 (235)
Q Consensus        37 ~i~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~-----~~l~~~-~~dg~v~i~d~~~~~~~~~~----------   92 (235)
                      .|.+||+.+++.++.+..+...        .+.+....     .++..+ ...+-+.++|+.+++.....          
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            6889999999998888765421        14554421     233333 34468999998875431100          


Q ss_pred             -eEeecC----CCcceeEEEEcc---CCCeEEEecCCC-cEEEEEc---CCCceee------eec-cCCCCCcceeeEEe
Q 026679           93 -TFLVGG----DTAEVCDIKFSN---DGKSMLLTTTNN-NIYVLDA---YGGEKRC------GFS-LEPSPNTNTEATFT  153 (235)
Q Consensus        93 -~~~~~~----~~~~v~~~~~~~---~~~~l~~~~~d~-~i~~~d~---~~~~~~~------~~~-~~~~~~~i~~~~~~  153 (235)
                       .+...+    ....+..++.+|   +++.|....-.+ .++-...   ++.....      .++ +.........++++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D  194 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID  194 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence             010000    112355566655   555555544332 1222211   1111100      000 00111245668999


Q ss_pred             CCCcEEEEeCCCCcEEEEEcCCCc---eeeee-cCC--CcceeEEEeec--CCCEEEEcc
Q 026679          154 PDGQYVVSGSGDGTLHAWNINTRN---EVACW-NGN--IGVVACLKWAP--RRAMFVAAS  205 (235)
Q Consensus       154 ~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~-~~~--~~~v~~~~~~~--~~~~l~~~~  205 (235)
                      ++|.++++--..+.|..|+..+.-   ....+ +..  -..+.++.+.+  +|.+.+.+.
T Consensus       195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence            999999999999999999987511   11222 212  34678899998  777666554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.13  E-value=2.7  Score=28.69  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=24.8

Q ss_pred             cceeEEEEccCC------CeEEEecCCCcEEEEEcCC
Q 026679          101 AEVCDIKFSNDG------KSMLLTTTNNNIYVLDAYG  131 (235)
Q Consensus       101 ~~v~~~~~~~~~------~~l~~~~~d~~i~~~d~~~  131 (235)
                      ..+..++|||.|      -.|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378899999954      3678888999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.13  E-value=8.7  Score=34.63  Aligned_cols=138  Identities=13%  Similarity=0.145  Sum_probs=78.4

Q ss_pred             ecCCeEEEEeccCCCCCCceeEeecCCCcceeEEE--------EccCCCeEEEecCCCcEEEEEcCCCce-------eee
Q 026679           73 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK--------FSNDGKSMLLTTTNNNIYVLDAYGGEK-------RCG  137 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~  137 (235)
                      +-|+.+.+|+.++...    .....+....|..+.        |.|.=++++..+.--.|.++-+.-.+.       ...
T Consensus        96 TiDn~L~lWny~~~~e----~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~  171 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNE----LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS  171 (1311)
T ss_pred             EeCCeEEEEEcCCCCc----cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc
Confidence            4578899999988443    222223333344333        233334555555555566654432111       111


Q ss_pred             eccCCCCCcceeeEEeCCCcEEEEeCCCCcEEE--EEcCCC---c-e----------------eeeec-CCCcceeEEEe
Q 026679          138 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA--WNINTR---N-E----------------VACWN-GNIGVVACLKW  194 (235)
Q Consensus       138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v--~d~~~~---~-~----------------~~~~~-~~~~~v~~~~~  194 (235)
                      ++.......|+++....+|+.+++|-.+ .|+=  |...++   + +                +..+. .+..+|..+..
T Consensus       172 ~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I  250 (1311)
T KOG1900|consen  172 FKISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI  250 (1311)
T ss_pred             eeeecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence            3333444668888888888877766544 3332  222111   1 0                11223 45679999999


Q ss_pred             ecCCCEEEEcc--cceEEeeCCC
Q 026679          195 APRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       195 ~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      ......+.+-+  +.+.+|++..
T Consensus       251 D~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  251 DNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccccceeeeeccCceEEEEEccC
Confidence            88777777776  8899999976

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.73  E-value=4.1  Score=30.02  Aligned_cols=153  Identities=14%  Similarity=0.171  Sum_probs=93.8

Q ss_pred             eEEEcCCCCEEEEEec---------CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEc
Q 026679           59 TVAFDQQGLVFAVAME---------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA  129 (235)
Q Consensus        59 ~~~~~~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  129 (235)
                      ...|.+.|++-+++..         .+.+++|+...              ...-+.++..|+|+.-++.-.+..|...|.
T Consensus       152 t~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--------------G~gpyGi~atpdGsvwyaslagnaiaridp  217 (353)
T COG4257         152 TAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--------------GGGPYGICATPDGSVWYASLAGNAIARIDP  217 (353)
T ss_pred             ceeeCCCccEEEeeccccceecCcccCceeeeccCC--------------CCCCcceEECCCCcEEEEeccccceEEccc
Confidence            4788999988888752         23444554432              234567888999998888777888888888


Q ss_pred             CCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCcee-eeecCCCcceeEEEeecCCCEEEEc-c-c
Q 026679          130 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV-ACWNGNIGVVACLKWAPRRAMFVAA-S-S  206 (235)
Q Consensus       130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~-~  206 (235)
                      .++.....-.........+.+--+|.|+.-++....+.+..||-.+..-. ..+.+....-.++.....++.-.+- + +
T Consensus       218 ~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~ag  297 (353)
T COG4257         218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAG  297 (353)
T ss_pred             ccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccC
Confidence            77643222222221233455666788888888777888888887544321 2233344455666666666655532 2 5


Q ss_pred             ceEEeeCCCCCCCCCCCCC
Q 026679          207 VLSFWIPNPSSNSTDESTD  225 (235)
Q Consensus       207 ~i~iw~~~~~~~~~~~~~~  225 (235)
                      .|.-+|.++.....++...
T Consensus       298 ai~rfdpeta~ftv~p~pr  316 (353)
T COG4257         298 AIGRFDPETARFTVLPIPR  316 (353)
T ss_pred             ceeecCcccceEEEecCCC
Confidence            5666666665555444433

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.62  E-value=4.4  Score=30.17  Aligned_cols=144  Identities=13%  Similarity=0.156  Sum_probs=90.1

Q ss_pred             CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceee---eeccC
Q 026679           65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC---GFSLE  141 (235)
Q Consensus        65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~---~~~~~  141 (235)
                      .+++...+..+.-+++.|+.+.+.+....+.  ...+.-.++..  .|++...+..+.-..++|+.+.+...   .+...
T Consensus        95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~l--nt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~  170 (370)
T COG5276          95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFL--NTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP  170 (370)
T ss_pred             cccEEEEEcCCCceEEEeccCCCCcceeccc--cCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccC
Confidence            4567778888889999999988753322211  11133344444  58888888866667888987654332   22222


Q ss_pred             CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCcee---eeecCCCcceeEEEeecCCCEEEEcccceEEeeCCCCC
Q 026679          142 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV---ACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSS  217 (235)
Q Consensus       142 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~  217 (235)
                      .  .....++.  .|++-..+..|+-+.+.|+.+....   .... -...+.++..+++..+++..+.-+.+-|.++.+
T Consensus       171 ~--~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~s  244 (370)
T COG5276         171 G--GDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPS  244 (370)
T ss_pred             C--CCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcccceEEEecCCCC
Confidence            1  22234555  4566667778888999999765432   2221 223688888898888888887666666665543

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=91.29  E-value=4.8  Score=29.95  Aligned_cols=73  Identities=15%  Similarity=0.232  Sum_probs=47.7

Q ss_pred             CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC------CCCcEEEEEcCCCceeeeecC-----CCcce
Q 026679          121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS------GDGTLHAWNINTRNEVACWNG-----NIGVV  189 (235)
Q Consensus       121 d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~v~d~~~~~~~~~~~~-----~~~~v  189 (235)
                      -..|.+||..+.+....-  ..-.+.|+.+.|..+.++++.|.      ....+..||..+.... .+..     -.++|
T Consensus        15 C~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv   91 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPG--NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPV   91 (281)
T ss_pred             CCEEEEEECCCCEeecCC--CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcE
Confidence            345999998777655432  22447799999987777777663      3556888998766532 2222     24678


Q ss_pred             eEEEeec
Q 026679          190 ACLKWAP  196 (235)
Q Consensus       190 ~~~~~~~  196 (235)
                      ..+.+..
T Consensus        92 ~a~~~~~   98 (281)
T PF12768_consen   92 TALTFIS   98 (281)
T ss_pred             EEEEeec
Confidence            7777643

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.10  E-value=6.8  Score=31.38  Aligned_cols=103  Identities=13%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             cceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc-----CCCCCcceeeEEeCCC------cEEEEeC------
Q 026679          101 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-----EPSPNTNTEATFTPDG------QYVVSGS------  163 (235)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~------~~l~~~~------  163 (235)
                      .....|+|.|||+.|++--..|.|++++..++.......+     .........++++|+-      .+|....      
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            4567899999998665544469999998655432211111     1123557889999874      2343321      


Q ss_pred             ----CCCcEEEEEcCCC-------ceee-eec---CCCcceeEEEeecCCCEEEEcc
Q 026679          164 ----GDGTLHAWNINTR-------NEVA-CWN---GNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       164 ----~dg~i~v~d~~~~-------~~~~-~~~---~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                          ....|.-|.+...       +.+. .+.   .|.  -..|.|.|||.+.++.+
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~G  164 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIG  164 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEEC
Confidence                1233544554321       1111 111   232  35788999998776554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=91.03  E-value=10  Score=33.41  Aligned_cols=172  Identities=14%  Similarity=0.123  Sum_probs=96.3

Q ss_pred             eEEEEecCcceeeeeeeccCC------ceEEEcCCCC--EEEEEe-----------cCCeEEEEeccCCCCCCceeEeec
Q 026679           37 SVRIWDLRVNACQGILRLRGR------PTVAFDQQGL--VFAVAM-----------EAGAIKLFDSRSYDKGPFDTFLVG   97 (235)
Q Consensus        37 ~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~~--~l~~~~-----------~dg~v~i~d~~~~~~~~~~~~~~~   97 (235)
                      .|++.|..++..+..+.....      ....|+..+.  +++++.           .+|.++.|++-.... .+......
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~-~lellh~T  932 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD-KLELLHKT  932 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc-eeeeeecc
Confidence            478888877776666654432      2245554332  344433           245577776544332 11111112


Q ss_pred             CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcC-CC
Q 026679           98 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TR  176 (235)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~  176 (235)
                      .-...+  .+..|-..++++ +-...+++||+...+.++......-+..|+.+.+  .+..+++|...-.+.++..+ .+
T Consensus       933 ~~~~~v--~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen  933 EIPGPV--GAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred             CCCccc--eEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC
Confidence            222333  355665555554 4566899999998888777666655566777766  56678888766566655443 34


Q ss_pred             ceeeeecCC--CcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          177 NEVACWNGN--IGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       177 ~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      +.+..+...  ...|+++.+- |...++.++  |++.+-.+..
T Consensus      1008 n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             CeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence            444444322  2345555443 556777777  6666655543

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.85  E-value=10  Score=32.89  Aligned_cols=202  Identities=13%  Similarity=0.154  Sum_probs=0.0

Q ss_pred             ccccceeEEEeecCCC----------eeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679           12 GHKERVISLCMSPVND----------SFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~----------~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      |..+.+..++.-....          ..+..-....-..|.+..+.++..+.... ..-.+.+..++|++-....+..+-
T Consensus        35 Gesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~PI~qI~fa~-~~~~~~~~~~~l~Vrt~~st~I~~  113 (765)
T PF10214_consen   35 GESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGSPIKQIKFAT-LSESFDEKSRWLAVRTETSTTILR  113 (765)
T ss_pred             CCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCCCeeEEEecc-cccccCCcCcEEEEEcCCEEEEEE


Q ss_pred             ----------eccCCCCCCceeEeecCCC---cceeEEEEcc-CCCeEEEecCCCcEEEEEc--CCCceeeeeccCCCCC
Q 026679           82 ----------DSRSYDKGPFDTFLVGGDT---AEVCDIKFSN-DGKSMLLTTTNNNIYVLDA--YGGEKRCGFSLEPSPN  145 (235)
Q Consensus        82 ----------d~~~~~~~~~~~~~~~~~~---~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~~~~  145 (235)
                                +.......+.....+..+.   .+..+++|+| +.+.||+....|...+|++  +.......+.......
T Consensus       114 p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~  193 (765)
T PF10214_consen  114 PEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS  193 (765)
T ss_pred             cccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCC


Q ss_pred             cce-----------eeEEeCCCcEEEEeCCCCcEEEEEcCCCce--eeeecCCCcceeEEEeecC--CCEEEEcccceEE
Q 026679          146 TNT-----------EATFTPDGQYVVSGSGDGTLHAWNINTRNE--VACWNGNIGVVACLKWAPR--RAMFVAASSVLSF  210 (235)
Q Consensus       146 ~i~-----------~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~i~i  210 (235)
                      .-.           .+.|.++.+.|+.++.. .+.++|+++...  .-........|..+.-+|.  +..++..+..|..
T Consensus       194 gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw  272 (765)
T PF10214_consen  194 GSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIW  272 (765)
T ss_pred             ccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEE


Q ss_pred             eeCCC
Q 026679          211 WIPNP  215 (235)
Q Consensus       211 w~~~~  215 (235)
                      .++..
T Consensus       273 ~~~~~  277 (765)
T PF10214_consen  273 LDVKS  277 (765)
T ss_pred             EEccC

These proteins are found in fungi.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=90.56  E-value=2.4  Score=25.27  Aligned_cols=43  Identities=16%  Similarity=0.324  Sum_probs=29.0

Q ss_pred             eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          162 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      +..+|.+.-||..+++....+.+ -.....++.+||+.+++.+-
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence            34567888999988775444433 34668999999999888875

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.46  E-value=6.9  Score=30.39  Aligned_cols=106  Identities=19%  Similarity=0.187  Sum_probs=0.0

Q ss_pred             CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCC-ccee
Q 026679          112 GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI-GVVA  190 (235)
Q Consensus       112 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~  190 (235)
                      ...++++..+|.|.-+|..++..+-..........+..-.+..+|+ ++.++.+|.++.+|.++|+.+-...... ..+.
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~  146 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA  146 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe


Q ss_pred             EEEeecCCCEEEEcc-cceEEeeCCCCCC
Q 026679          191 CLKWAPRRAMFVAAS-SVLSFWIPNPSSN  218 (235)
Q Consensus       191 ~~~~~~~~~~l~~~~-~~i~iw~~~~~~~  218 (235)
                      .-..-.++..++... +.+...+.++++.
T Consensus       147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~  175 (370)
T COG1520         147 SPPVVGDGTVYVGTDDGHLYALNADTGTL  175 (370)
T ss_pred             cCcEEcCcEEEEecCCCeEEEEEccCCcE

>PLN02193 nitrile-specifier protein

Probab=90.20  E-value=8.7  Score=31.07  Aligned_cols=112  Identities=5%  Similarity=0.010  Sum_probs=55.0

Q ss_pred             CCCCEEEEEecC-----CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC-----CcEEEEEcCCCc
Q 026679           64 QQGLVFAVAMEA-----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGE  133 (235)
Q Consensus        64 ~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~  133 (235)
                      -++.+++.|+.+     ..+..||+.+.+...............-.+++ .-+++.++.|+.+     ..+..||+.+.+
T Consensus       227 ~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~  305 (470)
T PLN02193        227 IGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKK  305 (470)
T ss_pred             ECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence            356677777654     35778888765431111000000111111222 2245666666654     347788887765


Q ss_pred             eeeeeccC---CCCCcceeeEEeCCCcEEEEeCCC----CcEEEEEcCCCce
Q 026679          134 KRCGFSLE---PSPNTNTEATFTPDGQYVVSGSGD----GTLHAWNINTRNE  178 (235)
Q Consensus       134 ~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~  178 (235)
                      ....-...   ..... ..++ .-+++.++.++.+    ..+.+||+.+.+-
T Consensus       306 W~~~~~~~~~~~~R~~-~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W  355 (470)
T PLN02193        306 WFHCSTPGDSFSIRGG-AGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW  355 (470)
T ss_pred             EEeCCCCCCCCCCCCC-cEEE-EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence            44321110   00111 1122 2356777777655    4589999887654

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=90.07  E-value=7.7  Score=30.27  Aligned_cols=12  Identities=8%  Similarity=0.180  Sum_probs=8.6

Q ss_pred             eEEEEeccCCCC
Q 026679           77 AIKLFDSRSYDK   88 (235)
Q Consensus        77 ~v~i~d~~~~~~   88 (235)
                      .+.+||..+...
T Consensus       190 ~v~~YD~~t~~W  201 (376)
T PRK14131        190 EVLSYDPSTNQW  201 (376)
T ss_pred             eEEEEECCCCee
Confidence            578888877554

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=90.03  E-value=5.9  Score=33.84  Aligned_cols=91  Identities=12%  Similarity=0.149  Sum_probs=51.7

Q ss_pred             EEEcCCCCEEEEEecCC-----eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce
Q 026679           60 VAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK  134 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  134 (235)
                      +.|-|+|..+++-..||     .|..+..+....+....  -.+....+...+|+-....++ ....+.+.+|-..+-..
T Consensus       252 LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~l--r~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNyhW  328 (1243)
T COG5290         252 LSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDL--RVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNYHW  328 (1243)
T ss_pred             cccccCCceeeeeccCCCCCcceEEEEccCCcccCCccc--cCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccceEE
Confidence            89999999999877554     45555544333211111  112334566677776555443 34566799998765443


Q ss_pred             eeeeccCCCCCcceeeEEeCC
Q 026679          135 RCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus       135 ~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      ........  ..+.-+.|+|.
T Consensus       329 YLK~e~~i--p~~s~vkwhpe  347 (1243)
T COG5290         329 YLKVERQI--PGISYVKWHPE  347 (1243)
T ss_pred             EEEEeecC--CCcceeeeccc
Confidence            32222222  22555788884

>PRK10115 protease 2; Provisional

Probab=89.87  E-value=12  Score=32.06  Aligned_cols=193  Identities=13%  Similarity=0.076  Sum_probs=91.7

Q ss_pred             eEEEeecCCCeeEEEecc------ceEEEEecCcc--eeeeeeeccCCce--EEE-cCCCCEEEEEec---CCeEEEEec
Q 026679           18 ISLCMSPVNDSFMSGSLD------HSVRIWDLRVN--ACQGILRLRGRPT--VAF-DQQGLVFAVAME---AGAIKLFDS   83 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~d------~~i~vwd~~~~--~~~~~~~~~~~~~--~~~-~~~~~~l~~~~~---dg~v~i~d~   83 (235)
                      ..++|.+|++.|+....+      ..|+.+++.++  +....+.......  ..+ +.+++.++..+.   ++.+.+++.
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            458999998766655432      35777888877  3334444322222  223 337776665543   457888885


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC----CCcEEEEEcCC-CceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT----NNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      ........ .. ..........+. +. +..+...+.    ...|...++.. ++.. .+..+.....+..+.+. .+.+
T Consensus       255 ~~~~~~~~-~~-~~~~~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~-~l~~~~~~~~i~~~~~~-~~~l  328 (686)
T PRK10115        255 ELADAEPF-VF-LPRRKDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWE-ELIPPRENIMLEGFTLF-TDWL  328 (686)
T ss_pred             cCCCCCce-EE-EECCCCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCe-EEECCCCCCEEEEEEEE-CCEE
Confidence            43222111 11 111112222222 22 233443333    22354455542 2222 22222222357777776 3345


Q ss_pred             EEEeCCCCcEE--EEEcCCCceeeeec-CCCcceeEEEee--cCC-CEEEEcc-----cceEEeeCCCCC
Q 026679          159 VVSGSGDGTLH--AWNINTRNEVACWN-GNIGVVACLKWA--PRR-AMFVAAS-----SVLSFWIPNPSS  217 (235)
Q Consensus       159 l~~~~~dg~i~--v~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~-~~l~~~~-----~~i~iw~~~~~~  217 (235)
                      +++...+|.-+  +++...+ .+..+. .....+..+.++  +++ .++++.+     ..+..+|+.+.+
T Consensus       329 ~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        329 VVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            56666666644  4454333 333332 222233334444  333 3444333     668888887654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.72  E-value=7  Score=29.33  Aligned_cols=116  Identities=14%  Similarity=0.159  Sum_probs=72.1

Q ss_pred             ceeEEEEccCCCeEEEecCCCcEEEEEcC------CCce-eeeeccCC---CCCcceeeEEeCCCcE------------E
Q 026679          102 EVCDIKFSNDGKSMLLTTTNNNIYVLDAY------GGEK-RCGFSLEP---SPNTNTEATFTPDGQY------------V  159 (235)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~------~~~~-~~~~~~~~---~~~~i~~~~~~~~~~~------------l  159 (235)
                      .-..++++|.+...++....+...+||..      ..+. +..+....   .+...+.+.|+....+            +
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            35689999998877777778899999986      1222 21122111   2245677888754333            5


Q ss_pred             EEeCCCCcEEEEEcCCCce-----eeeec-C-CCcceeEEEeecC--CCEEEEcc---cceEEeeCCCCC
Q 026679          160 VSGSGDGTLHAWNINTRNE-----VACWN-G-NIGVVACLKWAPR--RAMFVAAS---SVLSFWIPNPSS  217 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~~~-----~~~~~-~-~~~~v~~~~~~~~--~~~l~~~~---~~i~iw~~~~~~  217 (235)
                      +.+++||+|.-|...-+..     ...+. . .......+++...  +.+|..+.   +.|.|+|-.-.+
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~  173 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP  173 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc
Confidence            6788999999998532222     12222 1 1234456666644  67888886   789999865543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>smart00564 PQQ beta-propeller repeat

Probab=89.60  E-value=1.1  Score=20.52  Aligned_cols=24  Identities=38%  Similarity=0.335  Sum_probs=19.7

Q ss_pred             EEEEeCCCCcEEEEEcCCCceeee
Q 026679          158 YVVSGSGDGTLHAWNINTRNEVAC  181 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~~~~~~~  181 (235)
                      .++.++.+|.+..+|.++|+.+-.
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            577788899999999988887644

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.50  E-value=1.2  Score=21.50  Aligned_cols=29  Identities=21%  Similarity=0.046  Sum_probs=16.5

Q ss_pred             cccceeEEEeecCCCeeEEEe-cc--ceEEEE
Q 026679           13 HKERVISLCMSPVNDSFMSGS-LD--HSVRIW   41 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~-~d--~~i~vw   41 (235)
                      ....-....|+|||+.|+-++ .+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344566778888887765444 33  444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	235
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-16
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-16
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-16
2g99_A	308	Structural Basis For The Specific Recognition Of Me		9e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-16
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-04
2h9l_A	329	Wdr5delta23 Length = 329		4e-16
2h9l_A	329	Wdr5delta23 Length = 329		8e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-16
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-16
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		9e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-16
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		8e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-16
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		9e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-16
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		9e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-16
2gnq_A	336	Structure Of Wdr5 Length = 336		8e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-16
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-16
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-16
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-16
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-16
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-16
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-07
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-07
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-07
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-07
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-07
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		8e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-04

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
           ++ + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 218 DLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAA 301

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94  FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
           F + G T  V  +KFS +G+ +  ++ +  I +  AY G  EK   G  L  S     + 
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
            ++ D   +VS S D TL  W++++   +    G+   V C  + P+  + V+ S
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 236
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 296
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 297 LQGHTDVVISTACHPTENIIASAA 320

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94  FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
           F + G T  V  +KFS +G+ +  ++ +  I +  AY G  EK   G  L  S     + 
Sbjct: 39  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 93
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
            ++ D   +VS S D TL  W++++   +    G+   V C  + P+  + V+ S
Sbjct: 94  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 94  KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 153
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 210
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 271 LQGHTDVVISTACHPTENIIASAA 294

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94  FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
           F + G T  V  +KFS +G+ +  ++ +  I +  AY G  EK   G  L  S     + 
Sbjct: 13  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 67
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
            ++ D   +VS S D TL  W++++   +    G+   V C  + P+  + V+ S
Sbjct: 68  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 281 LQGHTDVVISTACHPTENIIASAA 304

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94  FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
           F + G T  V  +KFS +G+ +  ++ +  I +  AY G  EK   G  L  S     + 
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 77
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
            ++ D   +VS S D TL  W++++   +    G+   V C  + P+  + V+ S
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 115 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 231
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 292 LQGHTDVVISTACHPTENIIASAA 315

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94  FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
           F + G T  V  +KFS +G+ +  ++ +  I +  AY G  EK   G  L  S     + 
Sbjct: 34  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 88
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
            ++ D   +VS S D TL  W++++   +    G+   V C  + P+  + V+ S
Sbjct: 89  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 99  KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 158
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 215
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 276 LQGHTDVVISTACHPTENIIASAA 299

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94  FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
           F + G T  V  +KFS +G+ +  ++ +  I +  AY G  EK   G  L  S     + 
Sbjct: 18  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 72
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
            ++ D   +VS S D TL  W++++   +    G+   V C  + P+  + V+ S
Sbjct: 73  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAA 301

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94  FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
           F + G T  V  +KFS +G+ +  ++ +  I +  AY G  EK   G  L  S     + 
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
            ++ D   +VS S D TL  W++++   +    G+   V C  + P+  + V+ S
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 281 LQGHTDVVISTACHPTENIIASAA 304

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94  FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
           F + G T  V  +KFS +G+ +  ++ +  I +  AY G  EK   G  L  S     + 
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 77
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
            ++ D   +VS S D TL  W++++   +    G+   V C  + P+  + V+ S
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 98  KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 275 LQGHTDVVISTACHPTENIIASAA 298

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94  FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
           F + G T  V  +KFS +G+ +  ++ +  I +  AY G  EK   G  L  S     + 
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 71
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
            ++ D   +VS S D TL  W++++   +    G+   V C  + P+  + V+ S
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 281 LQGHTDVVISTACHPTENIIASAA 304

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94  FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
           F + G T  V  +KFS +G+ +  ++ +  I +  AY G  EK   G  L  S     + 
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 77
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
            ++ D   +VS S D TL  W++++   +    G+   V C  + P+  + V+ S
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 182 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 238
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 298
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 299 LQGHTDVVISTACHPTENIIASAA 322

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94  FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
           F + G T  V  +KFS +G+ +  ++ +  I +  AY G  EK   G  L  S     + 
Sbjct: 41  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 95
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
            ++ D   +VS S D TL  W++++   +    G+   V C  + P+  + V+ S
Sbjct: 96  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 98  KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 275 LQGHTDVVISTACHPTENIIASAA 298

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 103 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 162
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 219
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 280 LQGHTDVVISTACHPTENIIASAA 303

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 97  KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 156
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 213
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 274 LQGHTDVVISTACHPTENIIASAA 297

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAA 301

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAA 301

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAF 62
           + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
           ++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T +N
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVAC 181
            + + D   G+    ++   +      A F+   G+++VSGS D  ++ WN+ T+  V  
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 182 WNGNIGVVACLKWAPRRAMFVAAS 205
             G+  VV      P   +  +A+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAA 301

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 94  FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC-GFSLEPSPNTNTEA 150
           F + G T  V  +KFS +G+ +  ++ +  I +  AY G  EK   G  L  S     + 
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
            ++ D   +VS S D TL  W++++   +    G+   V C  + P+  + V+ S
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 35/206 (16%)
Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-GRPTVAFD 63
           +I+   +GH++ + SL   P  D  +SGS D +VRIWDLR   C   L +  G  TVA  
Sbjct: 156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 215
Query: 64  Q-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV----------GGDTAEVCDIKFSNDG 112
              G   A      A++++DS +        FLV           G    V  + F+ DG
Sbjct: 216 PGDGKYIAAGSLDRAVRVWDSET-------GFLVERLDSENESGTGHKDSVYSVVFTRDG 268
Query: 113 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT-EATF------------TPDGQYV 159
           +S++  + + ++ + +      +   S   +PN+ T E T+            T + +Y+
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANNK---SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 325
Query: 160 VSGSGDGTLHAWNINTRNEVACWNGN 185
           +SGS D  +  W+  + N +    G+
Sbjct: 326 LSGSKDRGVLFWDKKSGNPLLMLQGH 351

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE---------- 149
           T+ VC +KFSNDG+  L T  N    V     G      S + + N + E          
Sbjct: 64  TSVVCCVKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 150 ------ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 203
                   F+PDG+++ +G+ D  +  W+I  R  V    G+   +  L + P     V+
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 204 AS 205
            S
Sbjct: 183 GS 184

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 15/176 (8%)
Query: 3   DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL----RLRGRP 58
           + ++L+   GH   V  +  SP   +  S S D +V++W+      Q +      +RG  
Sbjct: 46  NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG-- 103
Query: 59  TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 118
            VAF   G   A A +   +KL++      G     L G  ++ V  + FS DG+++   
Sbjct: 104 -VAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVWGVAFSPDGQTIASA 157
Query: 119 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 174
           + +  + + +  G   +   +L    ++     F+PDGQ + S S D T+  WN N
Sbjct: 158 SDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 17/181 (9%)
Query: 12  GHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFDQQG 66
           GH   V+SL ++ +N + F+SGS D +VR+WDLR+ + + +    G      +V F   G
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGHEGDINSVKFFPDG 261
Query: 67  LVFAVAMEAGAIKLFDSRS------YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
             F    + G  +LFD R+      Y++ P        +   V  + FS  G+ +    +
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN---DNELPIVTSVAFSISGRLLFAGYS 318
Query: 121 NNNIYVLDAYGGEKRCGF-SLEPSPNTNTEAT-FTPDGQYVVSGSGDGTLHAWNINTRNE 178
           N + YV D    E      +L+ S          + DG  + +GS D  L  W  +   +
Sbjct: 319 NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378
Query: 179 V 179
           +
Sbjct: 379 I 379

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 13  HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFA 70
           H   V+SL ++P    F+SG+ D S ++WD+R   C+            + F   G  FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71  VAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
              +    +LFD R+  +      D  + G     +  + FS  G+ +L    + N  V 
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
           DA   + R G  L    N  +    T DG  V +GS D  L  WN
Sbjct: 298 DALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 13  HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFA 70
           H   V+SL ++P    F+SG+ D S ++WD+R   C+            + F   G  FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71  VAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
              +    +LFD R+  +      D  + G     +  + FS  G+ +L    + N  V 
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
           DA   + R G  L    N  +    T DG  V +GS D  L  WN
Sbjct: 298 DALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 13  HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFA 70
           H   V+SL ++P    F+SG+ D S ++WD+R   C+            + F   G  FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71  VAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
              +    +LFD R+  +      D  + G     +  + FS  G+ +L    + N  V 
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
           DA   + R G  L    N  +    T DG  V +GS D  L  WN
Sbjct: 298 DALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 13  HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFA 70
           H   V+SL ++P    F+SG+ D S ++WD+R   C+            + F   G  FA
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 71  VAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
              +    +LFD R+  +      D  + G     +  + FS  G+ +L    + N  V 
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCNVW 308
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
           DA   + R G  L    N  +    T DG  V +GS D  L  WN
Sbjct: 309 DALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 13  HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFA 70
           H   V+SL ++P    F+SG+ D S ++WD+R   C+            + F   G  FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71  VAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
              +    +LFD R+  +      D  + G     +  + FS  G+ +L    + N  V 
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
           DA   + R G  L    N  +    T DG  V +GS D  L  WN
Sbjct: 298 DALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 12/196 (6%)
Query: 10  FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFDQQ 65
            +GH+  V+S+ +S       S SLD  +R+WDL  N  Q I  +   P    T+AF   
Sbjct: 76  LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE-NGKQ-IKSIDAGPVDAWTLAFSPD 133
Query: 66  GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 125
               A     G + +F   S  K     + +      +  I +S DGK +     +  I 
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKK----EYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 126 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 185
           + D   G  +   +LE         TF+PD Q +V+ S DG +  +++   N     +G+
Sbjct: 190 IFDIATG--KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 186 IGVVACLKWAPRRAMF 201
              V  + + P    F
Sbjct: 248 ASWVLNVAFCPDDTHF 263

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 20/177 (11%)
Query: 5   RILRYFKGHKERVISLCMSP--VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TV 60
           ++L+ F GH   V+ L ++P    ++F+SG  D    +WD+R   C            +V
Sbjct: 187 QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV 246
Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRS------YDKGPFDTFLVGGDTAEVCDIKFSNDGKS 114
            +   G  FA   +    +L+D R+      Y K   ++ + G  +     + FS  G+ 
Sbjct: 247 RYYPSGDAFASGSDDATCRLYDLRADREVAIYSK---ESIIFGASS-----VDFSLSGRL 298
Query: 115 MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 171
           +     +  I V D   G +     L    N  +    +PDG    SGS D TL  W
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVS--ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 24/197 (12%)
Query: 10  FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGL 67
             GH+  V  +   PV    +S S D ++++WD      +  L+        ++FD  G 
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 68  VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI--- 124
           + A       IKL+D + ++        + G    V  +    +G  ++  + +  I   
Sbjct: 164 LLASCSADMTIKLWDFQGFEC----IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 125 -----YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 179
                Y +  + G +     + P+           DG  + S S D T+  W + T+   
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQ----------DGTLIASCSNDQTVRVWVVATKECK 269
Query: 180 ACWNGNIGVVACLKWAP 196
           A    +  VV C+ WAP
Sbjct: 270 AELREHRHVVECISWAP 286

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 15/195 (7%)
Query: 21  CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKL 80
           C+   +   +SG  D++++IWD     C+ IL       +       V         +++
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 197
Query: 81  FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE----KRC 136
           +D    + G     L+    A V  ++F+N    M+  + + +I V D         +R 
Sbjct: 198 WD---VNTGEMLNTLIHHCEA-VLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 137 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 196
                 + N         D +Y+VS SGD T+  WN +T   V   NG+   +ACL++  
Sbjct: 252 LVGHRAAVNV-----VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 306
Query: 197 RRAMFVAASSVLSFW 211
           R  +  ++ + +  W
Sbjct: 307 RLVVSGSSDNTIRLW 321

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 10/170 (5%)
Query: 13  HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFDQQGLV 68
           H + V   C S       S   D +++++  +    + +L ++         AF      
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVF--KAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 69  FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 128
            A       +K++DS +       T+    +    C   F+N    +LL T +N+ ++  
Sbjct: 672 IATCSADKKVKIWDSAT--GKLVHTYDEHSEQVNCC--HFTNKSNHLLLATGSNDFFLKL 727
Query: 129 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
               +K C  ++    N+     F+PD + + S S DGTL  W++ + NE
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 11  KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFDQQG 66
           + H + V   C S       S   D +++++  +    + +L ++         AF    
Sbjct: 619 RPHTDAVYHACFSQDGQRIASCGADKTLQVF--KAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 67  LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 126
              A       +K++DS +       T+    +    C   F+N    +LL T +N+ ++
Sbjct: 677 SYIATCSADKKVKIWDSAT--GKLVHTYDEHSEQVNCC--HFTNKSNHLLLATGSNDFFL 732
Query: 127 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 178
                 +K C  ++    N+     F+PD + + S S DGTL  W++ + NE
Sbjct: 733 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%)
Query: 8   RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG--ILRLRGRPTVAFDQQ 65
           R  +GH   V  + +S   +  +S S DHS+R+W+L+   CQ   +   +   +VAF   
Sbjct: 61  RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 66  GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNN 123
                      A+++++ +        T   G  T  V  ++FS   D   ++    +N 
Sbjct: 121 NRQIVSGGRDNALRVWNVKGE---CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 124 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173
           + V D   G  R    L+   N  T  T +PDG    S   DG    W++
Sbjct: 178 VKVWDLATG--RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 80/210 (38%), Gaps = 51/210 (24%)
Query: 8   RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGL 67
           +  KGH + VI+ C+    +  +SGS D+++++W      C   L             G 
Sbjct: 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL---------VGHTGG 161
Query: 68  VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 127
           V++  M                  D  ++ G                    +T+  + V 
Sbjct: 162 VWSSQMR-----------------DNIIISG--------------------STDRTLKVW 184
Query: 128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG 187
           +A  GE  C  +L    +T+T        + VVSGS D TL  W+I T   +    G++ 
Sbjct: 185 NAETGE--CIHTL--YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240
Query: 188 VVACLKWAPRRAMFVAASSVLSFWIPNPSS 217
            V C+++  RR +  A   ++  W P   +
Sbjct: 241 AVRCVQYDGRRVVSGAYDFMVKVWDPETET 270

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 46/203 (22%)
Query: 10  FKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV 68
            +GH++    L  +P +N   +S S DH++ +WD  +NA     R+     +      +V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWD--INATPKEHRVIDAKNIFTGHTAVV 234
Query: 69  FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI---- 124
             VA       LF S                         ++D K M+  T NNN     
Sbjct: 235 EDVAWHLLHESLFGS------------------------VADDQKLMIWDTRNNNTSKPS 270
Query: 125 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNI-NTRNEVACW 182
           + +DA+  E  C              +F P  ++++ +GS D T+  W++ N + ++  +
Sbjct: 271 HTVDAHTAEVNC-------------LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317
Query: 183 NGNIGVVACLKWAPRRAMFVAAS 205
             +   +  ++W+P     +A+S
Sbjct: 318 ESHKDEIFQVQWSPHNETILASS 340

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 46/203 (22%)
Query: 10  FKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV 68
            +GH++    L  +P +N   +S S DH++ +WD  +NA     R+     +      +V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWD--INATPKEHRVIDAKNIFTGHTAVV 236
Query: 69  FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI---- 124
             VA       LF S                         ++D K M+  T NNN     
Sbjct: 237 EDVAWHLLHESLFGS------------------------VADDQKLMIWDTRNNNTSKPS 272
Query: 125 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNI-NTRNEVACW 182
           + +DA+  E  C              +F P  ++++ +GS D T+  W++ N + ++  +
Sbjct: 273 HTVDAHTAEVNC-------------LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 319
Query: 183 NGNIGVVACLKWAPRRAMFVAAS 205
             +   +  ++W+P     +A+S
Sbjct: 320 ESHKDEIFQVQWSPHNETILASS 342

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 29/176 (16%)
Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           +++  ++R F+GH +    + +S       +G LD++VR WDLR           GR   
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR----------EGRQLQ 219
Query: 61  AFDQQGLVF-----------AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 109
             D    +F           AV ME+  +++      DK     + +    + V  +KF+
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFA 274
Query: 110 NDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 165
             GK  + T  +N   +L+A+              ++      + D +Y+V+GSGD
Sbjct: 275 YCGKWFVSTGKDN---LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 46/203 (22%)
Query: 10  FKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLV 68
            +GH++    L  +P +N   +S S DH++ +WD  +NA     R+     +      +V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWD--INATPKEHRVIDAKNIFTGHTAVV 238
Query: 69  FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI---- 124
             VA       LF S                         ++D K M+  T NNN     
Sbjct: 239 EDVAWHLLHESLFGS------------------------VADDQKLMIWDTRNNNTSKPS 274
Query: 125 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNI-NTRNEVACW 182
           + +DA+  E  C              +F P  ++++ +GS D T+  W++ N + ++  +
Sbjct: 275 HTVDAHTAEVNC-------------LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 321
Query: 183 NGNIGVVACLKWAPRRAMFVAAS 205
             +   +  ++W+P     +A+S
Sbjct: 322 ESHKDEIFQVQWSPHNETILASS 344

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 10  FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVA--FDQQGL 67
           F GH + ++S      +D  +S S+D SVR+W L+ N    +  + G P  A    Q G 
Sbjct: 285 FYGHSQSIVSASWVG-DDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQ 343
Query: 68  VFAVAMEAGAIKLFDSR 84
            +AVA   G + ++D +
Sbjct: 344 KYAVAFMDGQVNVYDLK 360

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.88
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.76
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.75
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.75
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.72
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.72
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.69
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.64
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.64
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.64
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.63
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.62
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.61
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.6
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.57
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.55
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.55
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.53
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.53
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.52
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.51
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.51
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.5
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.49
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.49
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.48
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.47
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.47
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.4
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.39
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.36
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.35
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.35
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.35
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.33
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.32
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.27
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.22
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.22
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.2
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.19
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.16
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.14
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.14
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.13
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.11
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.09
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.09
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.07
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.06
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.01
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.0
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.99
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.92
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.92
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.91
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.9
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.87
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.84
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.83
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.83
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.8
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.79
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.78
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.78
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.76
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.75
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.71
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.71
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.7
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.68
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.68
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.67
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.63
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.62
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.61
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.61
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.58
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.57
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.57
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.55
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.55
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.52
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.47
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.46
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.46
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.46
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.46
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.45
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.45
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.45
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.43
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.37
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.31
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.27
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.24
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.22
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.21
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	98.2
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.17
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.15
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.12
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.09
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.06
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.04
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.01
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.89
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.86
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.84
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.82
3ott_A	758	Two-component system sensor histidine kinase; beta	97.8
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.8
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.78
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.76
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.69
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.68
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.67
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.67
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.67
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.65
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.6
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.57
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.53
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.49
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.49
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.47
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.39
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.26
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.24
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.22
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.07
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.04
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.03
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.03
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.02
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.01
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.99
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.94
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.6
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.49
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.25
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.05
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.03
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.65
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.41
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.31
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.03
3ott_A	758	Two-component system sensor histidine kinase; beta	94.88
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	94.75
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.02
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.89
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.75
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.52
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	91.28
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	91.01
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.75
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	87.98
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.37
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	86.22
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	85.38
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	85.09
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	84.79
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	84.6
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	83.91
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	83.41
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	83.17
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.07

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4e-41  Score=250.62  Aligned_cols=207  Identities=18%  Similarity=0.270  Sum_probs=188.0

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~   79 (235)
                      ++++.+..+..|...+.+++|+|++++|++++.|+.|++||+++++....+..+...+  ++|+|++++|++++.||.|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~  189 (321)
T 3ow8_A          110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN  189 (321)
T ss_dssp             TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEE
Confidence            4667778888999999999999999999999999999999999998888887766544  99999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV  159 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  159 (235)
                      +||+++++.    ...+.+|..+|.+++|+|++++|++++.|+.|++||+++++....+.  .|...|.+++|+|++++|
T Consensus       190 iwd~~~~~~----~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l  263 (321)
T 3ow8_A          190 IFDIATGKL----LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS--GHASWVLNVAFCPDDTHF  263 (321)
T ss_dssp             EEETTTTEE----EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEE
T ss_pred             EEECCCCcE----EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc--CCCCceEEEEECCCCCEE
Confidence            999987653    56677899999999999999999999999999999999988776554  556779999999999999


Q ss_pred             EEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          160 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      ++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++  +.|++||..
T Consensus       264 ~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999999999999999999998  789999963

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-40  Score=247.86  Aligned_cols=205  Identities=22%  Similarity=0.341  Sum_probs=186.4

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecCCeEEEEecc
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v~i~d~~   84 (235)
                      ...+++|...|.+++|++++..+++++.|++|++||+.+++.+..+..+...  .++|+|++++|++++.+|.+++||++
T Consensus        73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~  152 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE  152 (321)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred             eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence            3457899999999999999999999999999999999999998888776644  49999999999999999999999998


Q ss_pred             CCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           85 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                      +.+.    ...+..+...+.+++|+|++++|++++.|+.|++||+++++.+..+.  .|..+|.+++|+|++++|++++.
T Consensus       153 ~~~~----~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          153 SGKK----EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE--GHAMPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             TCSE----EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCCCEEEECTTSCEEEEECT
T ss_pred             CCce----eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc--ccCCceeEEEEcCCCCEEEEEcC
Confidence            7664    55666788899999999999999999999999999999998877655  45567999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          165 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       165 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      |+.|++||+++++.+..+.+|...|.+++|+|++.+|++++  +.+++||+.+..
T Consensus       227 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT  281 (321)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence            99999999999999999999999999999999999999998  789999997654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-40  Score=246.34  Aligned_cols=213  Identities=14%  Similarity=0.171  Sum_probs=188.4

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~   79 (235)
                      ++++.++.+++|..+|.+++|+|++++|++|+.|++|++||+++++.+..+..|...+  ++|+|++.+|++|+.|+.|+
T Consensus        43 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~  122 (304)
T 2ynn_A           43 ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK  122 (304)
T ss_dssp             TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             CCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEE
Confidence            4567778889999999999999999999999999999999999999999998887655  99999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC--CC
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP--DG  156 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~~  156 (235)
                      +||+++...   ....+.+|...|.+++|+| ++..|++++.|+.|++||++.+.....+.. .+...+..+.|+|  ++
T Consensus       123 lWd~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~  198 (304)
T 2ynn_A          123 LWNWENNWA---LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDK  198 (304)
T ss_dssp             EEEGGGTTE---EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC-CCTTCEEEEEECCSTTC
T ss_pred             EEECCCCcc---hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc-CCcCcEEEEEEEEcCCC
Confidence            999987532   2455778999999999999 678999999999999999988776554442 3445688888887  77


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      ++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++  +.|++||+++.+.
T Consensus       199 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~  262 (304)
T 2ynn_A          199 PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV  262 (304)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence            8999999999999999999999999999999999999999999999998  8899999987654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.5e-41  Score=256.43  Aligned_cols=211  Identities=17%  Similarity=0.264  Sum_probs=191.4

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~   79 (235)
                      +++++++.+++|.+.|++++|+|++++|++|+.|++|++||+.+++++..+..|...+  ++|+|+++.+++++.|+.|+
T Consensus       138 ~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~  217 (410)
T 1vyh_C          138 ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK  217 (410)
T ss_dssp             TTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             CCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence            4677888899999999999999999999999999999999999999988888877554  99999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC----
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD----  155 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~----  155 (235)
                      +||++++..    ...+.+|...|.++.++|++.+|++++.|+.|++||+++++....+.  .|...|.+++|+|+    
T Consensus       218 ~wd~~~~~~----~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~  291 (410)
T 1vyh_C          218 MWEVQTGYC----VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR--EHRHVVECISWAPESSYS  291 (410)
T ss_dssp             EEETTTCCE----EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECCSCGGG
T ss_pred             EEECCCCcE----EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec--CCCceEEEEEEcCccccc
Confidence            999988664    55677899999999999999999999999999999999988776654  45567999999996    


Q ss_pred             ----------------CcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          156 ----------------GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       156 ----------------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                                      +.+|++|+.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++  +.|++||+....
T Consensus       292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~  371 (410)
T 1vyh_C          292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR  371 (410)
T ss_dssp             GGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred             chhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence                            67899999999999999999999999999999999999999999999998  779999997654


Q ss_pred             C
Q 026679          218 N  218 (235)
Q Consensus       218 ~  218 (235)
                      .
T Consensus       372 ~  372 (410)
T 1vyh_C          372 C  372 (410)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.7e-40  Score=247.33  Aligned_cols=209  Identities=15%  Similarity=0.265  Sum_probs=187.1

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      ..+.+++|.+.|++++|+|++++|++|+.||+|++||+.+++....+..+...+  ++|+|+++++++++.|+.+++|++
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            345688999999999999999999999999999999999999888888777554  899999999999999999999999


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                      .+..........+.+|...|.++.|++++. +++++.|+.|++||+++++....+.  .|...|.+++|+|++++|++|+
T Consensus       127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sg~  203 (340)
T 1got_B          127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             TTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc--CCCCceEEEEECCCCCEEEEEe
Confidence            876543334556778999999999998875 8999999999999999998876654  4557799999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          164 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       164 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      .|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++  +.+++||++...
T Consensus       204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~  259 (340)
T 1got_B          204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Confidence            999999999999999999999999999999999999999998  789999997643

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-40  Score=249.23  Aligned_cols=203  Identities=15%  Similarity=0.202  Sum_probs=168.6

Q ss_pred             hcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCC-CEEEEEecCCeEEEEeccCC
Q 026679           10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQG-LVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~-~~l~~~~~dg~v~i~d~~~~   86 (235)
                      +.+|.+.|++++|+|++++|++|+.|++|++||+++++.+..+..|...+  ++|+|++ .+|++++.|+.|++||++++
T Consensus       123 ~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~  202 (344)
T 4gqb_B          123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP  202 (344)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc
Confidence            34899999999999999999999999999999999999999999887655  8999987 57899999999999999987


Q ss_pred             CCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC-cEEEEeCC
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSG  164 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~  164 (235)
                      +.  ........+...+.+++|+|+ +++|++++.|+.|++||+++++.+..+..  |...|++++|+|++ ++|++|+.
T Consensus       203 ~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~--h~~~v~~v~fsp~g~~~lasgs~  278 (344)
T 4gqb_B          203 KP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV--HSQCVTGLVFSPHSVPFLASLSE  278 (344)
T ss_dssp             SC--EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC--CSSCEEEEEECSSSSCCEEEEET
T ss_pred             ce--eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC--CCCCEEEEEEccCCCeEEEEEeC
Confidence            64  122223445667899999995 56788899999999999999988876654  55679999999997 57999999


Q ss_pred             CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCE-EEEcc--cceEEeeCCCCC
Q 026679          165 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM-FVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       165 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~~i~iw~~~~~~  217 (235)
                      |+.|++||+++++.+ .+.+|.+.|++++|+|++.. |++++  +.|++|++....
T Consensus       279 D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          279 DCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            999999999888754 56889999999999999865 55666  889999997653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.7e-40  Score=248.14  Aligned_cols=202  Identities=16%  Similarity=0.261  Sum_probs=183.1

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      ....+.+|.+.|.++.|++++ .+++++.|++|++||+++++....+..|...+  ++|+|+++++++|+.|+.|++||+
T Consensus       135 ~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~  213 (340)
T 1got_B          135 VSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV  213 (340)
T ss_dssp             EEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            445678999999999999876 48999999999999999999999988877554  899999999999999999999999


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                      ++...    ...+.+|...|.+++|+|++++|++++.|+.|++||+++++....+....+...|.+++|+|+|++|++|+
T Consensus       214 ~~~~~----~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  289 (340)
T 1got_B          214 REGMC----RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             TTCSE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCee----EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence            87654    56677899999999999999999999999999999999988877666555556799999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679          164 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       164 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      .||.|++||+.+++.+..+.+|..+|.+++|+|++.+|++++  +.|++|+
T Consensus       290 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999999999999999999999999998  7899996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-40  Score=254.49  Aligned_cols=207  Identities=18%  Similarity=0.294  Sum_probs=187.2

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~   79 (235)
                      .++++++.+.+|...|.+++|+|++++|++|+.|++|++||++++.++..+..|...+  +.++|++.++++++.|+.|+
T Consensus       180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence            3556778899999999999999999999999999999999999999999998887554  88999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccC--------------------CCeEEEecCCCcEEEEEcCCCceeeeec
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--------------------GKSMLLTTTNNNIYVLDAYGGEKRCGFS  139 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~d~~i~~~d~~~~~~~~~~~  139 (235)
                      +||+.+.+.    ...+..|...|.+++|+|+                    +.+|++++.|+.|++||+++++.+..+.
T Consensus       260 vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~  335 (410)
T 1vyh_C          260 VWVVATKEC----KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  335 (410)
T ss_dssp             EEETTTCCE----EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCce----eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence            999987654    5667789999999999996                    6689999999999999999998887665


Q ss_pred             cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          140 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      .  |...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|++++|+|++.+|++++  +.|++|+++
T Consensus       336 ~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          336 G--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             C--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             C--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            4  556799999999999999999999999999999999999999999999999999999999998  889999863

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.7e-40  Score=246.85  Aligned_cols=203  Identities=15%  Similarity=0.249  Sum_probs=183.2

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC--CCCEEEEEecCCeEEEE
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~v~i~   81 (235)
                      ....+.+|.+.|.+++|+|++..|++++.|++|++||+++++.+..+..|...+  ++++|  +++.|++|+.||.|++|
T Consensus       146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w  225 (354)
T 2pbi_B          146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW  225 (354)
T ss_dssp             GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred             cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence            345567899999999999999999999999999999999999999998887654  67777  57899999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                      |+++++.    ...+..|...|.+++|+|++++|++++.|+.|++||++.++....+..+.+...+.+++|+|++++|++
T Consensus       226 d~~~~~~----~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~  301 (354)
T 2pbi_B          226 DMRSGQC----VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA  301 (354)
T ss_dssp             ETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             ECCCCcE----EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence            9998664    566778999999999999999999999999999999999887776665555556899999999999999


Q ss_pred             eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679          162 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      |+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++  +.+++|+
T Consensus       302 g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          302 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999999999999999999999998  7899995

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.7e-40  Score=242.38  Aligned_cols=208  Identities=15%  Similarity=0.214  Sum_probs=181.6

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      ++.+.|++|.+.|++++|+|++++|++++.||+|++||++++..+..+..+...+  ++|+|++++|++|+.|+.|++||
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            4567789999999999999999999999999999999999999999888877654  89999999999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEE
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVS  161 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  161 (235)
                      +.+++.    ...+.+|...|.+++|+|++++|++++.|+.|++||++++.... .....|...|.+++|+| ++.+|++
T Consensus        84 ~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~~l~s  158 (304)
T 2ynn_A           84 YNTGEK----VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAFNPKDPSTFAS  158 (304)
T ss_dssp             TTTCCE----EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE-EEECCCCSCEEEEEECTTCTTEEEE
T ss_pred             CCCCcE----EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh-hhhcccCCcEEEEEECCCCCCEEEE
Confidence            988764    66677899999999999999999999999999999998774432 23345667799999999 6889999


Q ss_pred             eCCCCcEEEEEcCCCceeeeec-CCCcceeEEEeec--CCCEEEEcc--cceEEeeCCCCC
Q 026679          162 GSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAP--RRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      |+.|+.|++||++++.....+. +|...+..+.|+|  ++.+|++++  +.|++||++...
T Consensus       159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~  219 (304)
T 2ynn_A          159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS  219 (304)
T ss_dssp             EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred             EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence            9999999999998887766554 4567899999987  778999998  889999997654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8.3e-40  Score=245.42  Aligned_cols=204  Identities=16%  Similarity=0.133  Sum_probs=172.0

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee----eccCCc--eEEEcCCCCEEEEEecCCeEEEEeccC
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL----RLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~~~~--~~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      .|...|.+++|+|++ .|++|+.||+|++||+++++.....    ..|...  +++|+|++++|++|+.|+.|++||+++
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            356789999999985 7889999999999999988765443    345544  499999999999999999999999988


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCC-eEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEEEeC
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGS  163 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~  163 (235)
                      ++.    ...+.+|...|.+++|+|++. .|++++.|+.|++||+++++....+....+...+.+++|+| ++++|++|+
T Consensus       159 ~~~----~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          159 QVV----LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             TEE----EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred             CcE----EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence            654    667789999999999999885 67899999999999999999888776666667799999999 567889999


Q ss_pred             CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCCCCCC
Q 026679          164 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSNST  220 (235)
Q Consensus       164 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~~~~~  220 (235)
                      .||.|++||+++++++..+.+|...|++++|+|++ ++|++++  +.|+|||+++.+...
T Consensus       235 ~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~  294 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR  294 (344)
T ss_dssp             TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred             cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence            99999999999999999999999999999999998 5788887  889999998775543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.3e-39  Score=242.28  Aligned_cols=209  Identities=16%  Similarity=0.221  Sum_probs=183.7

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecCCeEEEEec
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      ..+.+++|.+.|++++|+|++++|++|+.|++|++||..+++....+..+..  ..++|+|++..+++++.|+.+++|++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            4567889999999999999999999999999999999998888877776654  44999999999999999999999998


Q ss_pred             cCCCCC--CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC--CCcEE
Q 026679           84 RSYDKG--PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP--DGQYV  159 (235)
Q Consensus        84 ~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l  159 (235)
                      ......  ......+..|...|.+++|+|++..|++++.|+.|++||+++++.+..+..  |...+.+++|+|  ++++|
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG--HGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECCCSSCCEE
T ss_pred             eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC--CCCCeEEEEEEeCCCCCEE
Confidence            754321  122345567899999999999999999999999999999999998877664  446699999987  57899


Q ss_pred             EEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          160 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      ++|+.||.|++||+++++.+..+.+|...|.+++|+|++.+|++++  +.+++||+...
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            9999999999999999999999999999999999999999999998  88999999764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-39  Score=243.34  Aligned_cols=209  Identities=17%  Similarity=0.219  Sum_probs=177.1

Q ss_pred             hhhhhhhccccc-ceeEEEeecCCCeeEEEeccceEEEEecCcceeeee---eeccCCc--eEEEcCCCCEEEEEecCCe
Q 026679            4 NRILRYFKGHKE-RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGI---LRLRGRP--TVAFDQQGLVFAVAMEAGA   77 (235)
Q Consensus         4 ~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~--~~~~~~~~~~l~~~~~dg~   77 (235)
                      .+++..+++|.. .|++++|+|+|++|++|+.|++|++||+.++.....   ...|...  .++|+|++++|++++.|+.
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            356778899988 999999999999999999999999999987754322   2345444  4999999999999999999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceee-eeccCCCCCcceeeEEeCCC
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC-GFSLEPSPNTNTEATFTPDG  156 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~i~~~~~~~~~  156 (235)
                      +++||+.....  .....+.+|...|.+++|+|++++|++++.|+.|++||++.+.... ......|...|.+++|+|++
T Consensus        85 v~iw~~~~~~~--~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  162 (345)
T 3fm0_A           85 TCIWKKNQDDF--ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ  162 (345)
T ss_dssp             EEEEEECCC-E--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred             EEEEEccCCCe--EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence            99999876532  1245677899999999999999999999999999999998764322 23345666789999999999


Q ss_pred             cEEEEeCCCCcEEEEEcCCCc--eeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          157 QYVVSGSGDGTLHAWNINTRN--EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      ++|++++.|+.|++||.++++  ....+.+|...|.+++|+|++++|++++  +.+++|+..
T Consensus       163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            999999999999999998775  4467889999999999999999999998  789999863

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.3e-39  Score=236.81  Aligned_cols=207  Identities=14%  Similarity=0.285  Sum_probs=175.0

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCc--ceeeeeeeccCCce--EEEcC--CCCEEEEEecCCeEEEE
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV--NACQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~v~i~   81 (235)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|++||+..  .+.+..+..|...+  ++|++  ++++|++++.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45789999999999999999999999999999999974  36677888887665  88876  48999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccC--CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC----
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD----  155 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~----  155 (235)
                      |++++....  ...+..|...|.+++|+|+  +.+|++++.|+.|++||++++..........|...+.+++|+|+    
T Consensus        83 d~~~~~~~~--~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           83 KEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EBSSSCBCC--CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             EcCCCceEE--EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            998754222  3445678899999999997  88999999999999999987643322334566678999999997    


Q ss_pred             ---------CcEEEEeCCCCcEEEEEcCCCc----eeeeecCCCcceeEEEeecCC---CEEEEcc--cceEEeeCCCC
Q 026679          156 ---------GQYVVSGSGDGTLHAWNINTRN----EVACWNGNIGVVACLKWAPRR---AMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       156 ---------~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~~i~iw~~~~~  216 (235)
                               +++|++|+.|+.|++||+++++    ....+.+|...|.+++|+|++   .+|++++  +.+++|+++..
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence                     5799999999999999998766    566788999999999999985   7899887  78999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.7e-39  Score=239.34  Aligned_cols=206  Identities=17%  Similarity=0.236  Sum_probs=179.3

Q ss_pred             hhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCc-----ceeeeeeeccCCce--EEEcCCCCEEEEEecCC
Q 026679            5 RILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRV-----NACQGILRLRGRPT--VAFDQQGLVFAVAMEAG   76 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~-----~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg   76 (235)
                      .+..+|++|.+.|++++|+|++ ++|++|+.|++|++|++..     +.++..+..|...+  ++|+|++++|++++.|+
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence            4556789999999999999965 8999999999999999864     23466777777655  89999999999999999


Q ss_pred             eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC-
Q 026679           77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD-  155 (235)
Q Consensus        77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-  155 (235)
                      .|++||+++++.    ...+.+|...|.+++|+|++.+|++++.|+.|++||++.. ....  ...|...+.++.|+|. 
T Consensus        88 ~v~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~--~~~h~~~v~~~~~~~~~  160 (319)
T 3frx_A           88 TLRLWDVATGET----YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLAT--LLGHNDWVSQVRVVPNE  160 (319)
T ss_dssp             EEEEEETTTTEE----EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEE--ECCCSSCEEEEEECCC-
T ss_pred             EEEEEECCCCCe----eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEE--EeccCCcEEEEEEccCC
Confidence            999999988654    5667789999999999999999999999999999999644 3433  3456677999999985 


Q ss_pred             -----CcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          156 -----GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       156 -----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                           +..|++++.|+.|++||+++++....+.+|...|.+++|+|++.+|++++  +.+++||+...+
T Consensus       161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~  229 (319)
T 3frx_A          161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK  229 (319)
T ss_dssp             -----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence                 44899999999999999999999999999999999999999999999998  789999997654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-38  Score=235.69  Aligned_cols=206  Identities=18%  Similarity=0.279  Sum_probs=183.9

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      +...+.+|.+.|++++|+|++++|++++.||.|++|++.+++....+..|...+  ++|+|++++|++++.|+.|++||+
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence            455678999999999999999999999999999999999999888888777554  999999999999999999999999


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                      ++.+.    ...+..|...|.+++|+|++++|++++.|+.|++||+++++....+.  .|..++.+++|+|++++|++++
T Consensus        95 ~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~  168 (312)
T 4ery_A           95 SSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSS  168 (312)
T ss_dssp             TTCCE----EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcE----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec--CCCCcEEEEEEcCCCCEEEEEe
Confidence            87654    56677899999999999999999999999999999999988776655  4556799999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeec-CCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          164 GDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       164 ~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      .||.|++||+++++.+..+. .+..++..++|+|++++|++++  +.+++||+....
T Consensus       169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  225 (312)
T 4ery_A          169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK  225 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred             CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            99999999999998877664 4566899999999999999997  789999997654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.6e-38  Score=238.73  Aligned_cols=205  Identities=20%  Similarity=0.250  Sum_probs=176.4

Q ss_pred             hhhhhhcccccceeEEEe-----ec-CCCeeEEEeccceEEEEecCcc-------eeeeeeeccCCce--EEEcCCCCEE
Q 026679            5 RILRYFKGHKERVISLCM-----SP-VNDSFMSGSLDHSVRIWDLRVN-------ACQGILRLRGRPT--VAFDQQGLVF   69 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~-----~~-~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~--~~~~~~~~~l   69 (235)
                      ++...+++|.+.|++++|     ++ ++++|++|+.|++|++||+...       .....+..|...+  ++|+|++.++
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            345678999999999999     76 8899999999999999998753       3455666776554  8999999999


Q ss_pred             EEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCccee
Q 026679           70 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE  149 (235)
Q Consensus        70 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~  149 (235)
                      ++++.|+.|++||+++++.    ...+.+|...|.+++|+|++++|++++.|+.|++||+.............|...+.+
T Consensus        92 ~s~s~D~~v~lwd~~~~~~----~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTT----YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC  167 (343)
T ss_dssp             EEEETTSEEEEEETTSSCE----EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred             EEEcCCCcEEEEECCCCcE----EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence            9999999999999988654    566778999999999999999999999999999999985444333333456778999


Q ss_pred             eEEeCCC----------cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          150 ATFTPDG----------QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       150 ~~~~~~~----------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      ++|+|++          .+|++++.||.|++|| .+.+....+.+|...|.+++|+|++++|++++  +.+++||+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred             eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            9999987          7999999999999999 45677778889999999999999999999998  789999994

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.1e-39  Score=241.78  Aligned_cols=201  Identities=15%  Similarity=0.187  Sum_probs=172.7

Q ss_pred             cccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCC-EEEEEecCCeEEEEeccCCC
Q 026679           11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGL-VFAVAMEAGAIKLFDSRSYD   87 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~-~l~~~~~dg~v~i~d~~~~~   87 (235)
                      .+|.+.|++++|+|++++|++|+.|++|++||+++++.+..+..|...+  ++|+|++. ++++++.||.|++||+++++
T Consensus       136 ~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~  215 (357)
T 4g56_B          136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK  215 (357)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc
Confidence            4799999999999999999999999999999999999999998877655  89999874 78999999999999998866


Q ss_pred             CCCceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC-cEEEEeCCC
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGD  165 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d  165 (235)
                      .  ........+...+.+++|+|++ .+|++++.|+.|++||+++++....+.  .+...|++++|+|++ ++|++|+.|
T Consensus       216 ~--~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D  291 (357)
T 4g56_B          216 P--ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISED  291 (357)
T ss_dssp             C--BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETT
T ss_pred             e--eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCC
Confidence            4  2233345667789999999974 578889999999999999998877665  455679999999987 578999999


Q ss_pred             CcEEEEEcCCCceeeeecCCCcceeEEEeec-CCCEEEEcc--cceEEeeCCCC
Q 026679          166 GTLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       166 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      +.|+|||+++++.+..+ +|...|++++|+| ++.+|++++  +.|++|++...
T Consensus       292 ~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          292 CTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999998877655 6999999999999 789999987  88999998653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.8e-39  Score=244.74  Aligned_cols=213  Identities=18%  Similarity=0.271  Sum_probs=183.9

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      .+.+.+++|.+.|++++|+|++++|++|+.|++|++||+.+++....+..|...+  ++|+|++++|++|+.|+.+++||
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~  136 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN  136 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred             EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence            3456789999999999999999999999999999999999999998888877544  89999999999999999999999


Q ss_pred             ccCCCC---CCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeecc---CCCCCcceeeEEeC-
Q 026679           83 SRSYDK---GPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSL---EPSPNTNTEATFTP-  154 (235)
Q Consensus        83 ~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~i~~~~~~~-  154 (235)
                      +.....   .......+.+|...+.++.|.|+ +..|++++.|+.|++||+++++.+..+..   ..|...+.+++|+| 
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  216 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL  216 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence            975321   11123446689999999999996 45699999999999999999988766532   35667799999987 


Q ss_pred             CCcEEEEeCCCCcEEEEEcC-CCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          155 DGQYVVSGSGDGTLHAWNIN-TRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       155 ~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      ++++|++|+.|+.|++||++ .++.+..+.+|...|.+++|+|++.+|++++  +.+++||+.+..
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred             CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence            88999999999999999998 5577888999999999999999999999998  889999998653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-38  Score=236.08  Aligned_cols=213  Identities=17%  Similarity=0.270  Sum_probs=169.5

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc--eeeeee-ec-cCCc--eEEEcCCCCEEEEEecC
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGIL-RL-RGRP--TVAFDQQGLVFAVAMEA   75 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~-~~-~~~~--~~~~~~~~~~l~~~~~d   75 (235)
                      .+.++++.+++|.++|++++|+|+  +|++|+.|++|++||+..+  .....+ .. |...  .++|+|++++|++++.|
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D   79 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD   79 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence            455678889999999999999986  9999999999999999875  344444 22 4443  49999999999999999


Q ss_pred             CeEEEEeccCCCC---CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC-ce-eeeeccCCCCCcceee
Q 026679           76 GAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EK-RCGFSLEPSPNTNTEA  150 (235)
Q Consensus        76 g~v~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~-~~~~~~~~~~~~i~~~  150 (235)
                      +.|++||+.....   .......+.+|...|.+++|+|++++|++++.|+.|++||++.. .. .....+..|...|.++
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v  159 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV  159 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred             CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence            9999999864321   11234556789999999999999999999999999999999543 21 1222345566789999


Q ss_pred             EEeCCCcEEEEeCCCCcEEEEEcCCC--ceeeeecCCCcceeEEEeecC--CCEEEEcc--cceEEeeCCCC
Q 026679          151 TFTPDGQYVVSGSGDGTLHAWNINTR--NEVACWNGNIGVVACLKWAPR--RAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       151 ~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~--~~i~iw~~~~~  216 (235)
                      +|+|++++|++++.|+.|++||..++  +++..+.+|...|.+++|+|+  +.+|++++  +.+++|++...
T Consensus       160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            99999999999999999999999776  677888999999999999998  67888887  88999998643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.8e-38  Score=253.13  Aligned_cols=213  Identities=18%  Similarity=0.287  Sum_probs=175.0

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCccee--eeeeec-------------------------
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC--QGILRL-------------------------   54 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~-------------------------   54 (235)
                      .+++....+.+|...|++++|+|+|++||+|+.|++|+|||+.+++.  ...+..                         
T Consensus        47 ~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~  126 (611)
T 1nr0_A           47 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE  126 (611)
T ss_dssp             TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             CCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence            34667778999999999999999999999999999999999864321  112211                         


Q ss_pred             -------------------cCC--ceEEEcCCCC-EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCC
Q 026679           55 -------------------RGR--PTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG  112 (235)
Q Consensus        55 -------------------~~~--~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  112 (235)
                                         |..  ..++|+|++. .|++++.|+.|++||..+.+.    ...+.+|...|.+++|+|++
T Consensus       127 ~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~----~~~l~~H~~~V~~v~fspdg  202 (611)
T 1nr0_A          127 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF----KSTFGEHTKFVHSVRYNPDG  202 (611)
T ss_dssp             CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE----EEEECCCSSCEEEEEECTTS
T ss_pred             ceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE----eeeeccccCceEEEEECCCC
Confidence                               221  2377778775 588899999999999765432    55678899999999999999


Q ss_pred             CeEEEecCCCcEEEEEcCCCceeeeecc-----CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceee-------
Q 026679          113 KSMLLTTTNNNIYVLDAYGGEKRCGFSL-----EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA-------  180 (235)
Q Consensus       113 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-------  180 (235)
                      ++|++++.|+.|++||+.+++....+..     ..|...|.+++|+|++++|++++.|+.|++||+++++.+.       
T Consensus       203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~  282 (611)
T 1nr0_A          203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR  282 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence            9999999999999999999887766532     1577889999999999999999999999999998776543       


Q ss_pred             ------------------------------------eecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          181 ------------------------------------CWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       181 ------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                                                          .+.+|...|.+++|+|++++|++++  +.+++||+.+...
T Consensus       283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS  358 (611)
T ss_dssp             GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence                                                3357888999999999999999998  8899999987644

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.4e-38  Score=232.89  Aligned_cols=204  Identities=17%  Similarity=0.284  Sum_probs=181.5

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      ..++.+++|...|.+++|+|++++|++|+.|++|++||+++++....+..|...+  ++|+|++.++++++.|+.|++||
T Consensus        56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd  135 (319)
T 3frx_A           56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT  135 (319)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            4567789999999999999999999999999999999999999999998887655  89999999999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccC------CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSND------GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG  156 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  156 (235)
                      ++..     ....+.+|...|.++.|.|.      +..+++++.|+.|++||+++.+....+.  .|...|.+++|+|++
T Consensus       136 ~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~sp~g  208 (319)
T 3frx_A          136 IKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI--GHNSNINTLTASPDG  208 (319)
T ss_dssp             TTSC-----EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC--CCCSCEEEEEECTTS
T ss_pred             CCCC-----eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec--CCCCcEEEEEEcCCC
Confidence            9642     25567789999999999985      4489999999999999999888766554  456779999999999


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS  216 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~  216 (235)
                      ++|++++.||.|++||+++++.+..+..+ ..|.+++|+|++.++++++ +.+++|+++..
T Consensus       209 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~  268 (319)
T 3frx_A          209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ  268 (319)
T ss_dssp             SEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTEEEEEEETTE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC
Confidence            99999999999999999999998888754 6899999999999999987 67999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.3e-38  Score=239.51  Aligned_cols=208  Identities=19%  Similarity=0.329  Sum_probs=178.2

Q ss_pred             hhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeee-----eccCCce--EEEcC-CCCEEEEEecCC
Q 026679            6 ILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGIL-----RLRGRPT--VAFDQ-QGLVFAVAMEAG   76 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~-----~~~~~~~--~~~~~-~~~~l~~~~~dg   76 (235)
                      ..+.+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..+     ..|...+  +++++ ++.+|++|+.|+
T Consensus       149 ~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~  228 (380)
T 3iz6_a          149 VSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT  228 (380)
T ss_dssp             TCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS
T ss_pred             ceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC
Confidence            345678999999999999975 57999999999999999999888776     3344433  77766 889999999999


Q ss_pred             eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCC-----CCcceeeE
Q 026679           77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS-----PNTNTEAT  151 (235)
Q Consensus        77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----~~~i~~~~  151 (235)
                      .|++||++....   ....+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+..     ...+.+++
T Consensus       229 ~v~~wd~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  305 (380)
T 3iz6_a          229 TVRLWDLRITSR---AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA  305 (380)
T ss_dssp             CEEEEETTTTCC---CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEE
T ss_pred             eEEEEECCCCCc---ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEE
Confidence            999999985332   2456678999999999999999999999999999999999988776654322     23488999


Q ss_pred             EeCCCcEEEEeCCCCcEEEEEcCCCceeeee----cCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          152 FTPDGQYVVSGSGDGTLHAWNINTRNEVACW----NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       152 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      |+|+|++|++|+.||.|++||+.+++.+..+    .+|.+.|.+++|+|++.+|++|+  +.+++|++...
T Consensus       306 ~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          306 FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             ECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             ECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            9999999999999999999999988887766    67999999999999999999998  88999998764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1e-37  Score=233.72  Aligned_cols=210  Identities=14%  Similarity=0.253  Sum_probs=177.7

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc----eeeeeeeccCCce--EEEcC--CCCEEEEEecCCeEE
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN----ACQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGAIK   79 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~v~   79 (235)
                      ..+++|.+.|++++|+|++++|++++.||.|++||+.++    +....+..+...+  ++|+|  ++++|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            456799999999999999999999999999999999876    4556666666554  89999  699999999999999


Q ss_pred             EEeccCCCCCC-----ceeEeecCCCcceeEEEEccC--CCeEEEecCCCcEEEEEcCCCceee----------------
Q 026679           80 LFDSRSYDKGP-----FDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRC----------------  136 (235)
Q Consensus        80 i~d~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~----------------  136 (235)
                      +||++......     .....+..|...|.+++|+|+  +++|++++.|+.|++||+++++...                
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            99998764322     235566789999999999999  9999999999999999987654221                


Q ss_pred             ------------------------------------------eeccCCCCCcceeeEEeCCC----cEEEEeCCCCcEEE
Q 026679          137 ------------------------------------------GFSLEPSPNTNTEATFTPDG----QYVVSGSGDGTLHA  170 (235)
Q Consensus       137 ------------------------------------------~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~v  170 (235)
                                                                ......|...|.+++|+|++    ++|++++.||.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence                                                      22334567789999999998    89999999999999


Q ss_pred             EEcCCC----------------------------------------------ceeeeecCCCcceeEEEeecCCCEEEEc
Q 026679          171 WNINTR----------------------------------------------NEVACWNGNIGVVACLKWAPRRAMFVAA  204 (235)
Q Consensus       171 ~d~~~~----------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~  204 (235)
                      ||++++                                              +.+..+.+|...|++++|+|++++|+++
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  324 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA  324 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence            999864                                              5667778899999999999999999999


Q ss_pred             c--cceEEeeCCCCC
Q 026679          205 S--SVLSFWIPNPSS  217 (235)
Q Consensus       205 ~--~~i~iw~~~~~~  217 (235)
                      +  +.+++|+++...
T Consensus       325 ~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          325 GDDGKVRLWKATYSN  339 (351)
T ss_dssp             ETTSCEEEEEECTTS
T ss_pred             cCCCcEEEEecCcCc
Confidence            8  789999998654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-38  Score=240.00  Aligned_cols=214  Identities=23%  Similarity=0.362  Sum_probs=177.6

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcC-CCCEEEEEecCCeEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQ-QGLVFAVAMEAGAIK   79 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~~~dg~v~   79 (235)
                      ++++.+..+++|...|.+++|+|++++|++++.|++|++||+++++....+..+. ...++++| +++++++++.|+.|+
T Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~  232 (393)
T 1erj_A          153 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR  232 (393)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEE
T ss_pred             CCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence            4567778889999999999999999999999999999999999998887776554 34489999 899999999999999


Q ss_pred             EEeccCCCCCCce---eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCcee----------eeeccCCCCCc
Q 026679           80 LFDSRSYDKGPFD---TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR----------CGFSLEPSPNT  146 (235)
Q Consensus        80 i~d~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~----------~~~~~~~~~~~  146 (235)
                      +||++++......   .....+|...|.+++|+|++++|++++.|+.|++||+++....          .......|...
T Consensus       233 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~  312 (393)
T 1erj_A          233 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF  312 (393)
T ss_dssp             EEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC
T ss_pred             EEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc
Confidence            9999876531000   0112568899999999999999999999999999999764321          12233456677


Q ss_pred             ceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeec------CCCEEEEcc--cceEEeeCCC
Q 026679          147 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP------RRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~--~~i~iw~~~~  215 (235)
                      |.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|++      ++.+|++++  +.+++|+++.
T Consensus       313 v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          313 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            99999999999999999999999999999999999999999999999886      688999997  7899999854

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-37  Score=231.64  Aligned_cols=205  Identities=18%  Similarity=0.307  Sum_probs=174.5

Q ss_pred             cccccceeEEEeecCCCeeEEEeccceEEEEecCcc--eeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679           11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~   86 (235)
                      .+|...|.+++|+|++++|++|+.|+++++||+..+  +....+..|...+  ++|+|++++|++++.|+.|++||++..
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            689999999999999999999999999999998776  4566777776554  999999999999999999999999875


Q ss_pred             CCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG  166 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  166 (235)
                      .. ......+..|...|.+++|+|++++|++++.|+.|++||.+.++......+..|...|.+++|+|++++|++++.|+
T Consensus       138 ~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~  216 (345)
T 3fm0_A          138 DE-YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR  216 (345)
T ss_dssp             SC-EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CC-eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence            42 12234567889999999999999999999999999999998887665556677778899999999999999999999


Q ss_pred             cEEEEEcCCC---------------ceeeeecC-CCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          167 TLHAWNINTR---------------NEVACWNG-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       167 ~i~v~d~~~~---------------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      .|++||....               +++..+.+ |...|.+++|+|++..|++++  +.+++|+.+..
T Consensus       217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence            9999997432               22333444 788999999999999999987  77999998754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.8e-38  Score=231.95  Aligned_cols=206  Identities=17%  Similarity=0.217  Sum_probs=168.0

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce--eeeeeeccCCce--EEEcC--CCCEEEEEecCCeEEEE
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~v~i~   81 (235)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|++||+.++.  .+..+..|...+  ++|++  ++++|++++.|+.|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3467999999999999999999999999999999998764  456777777655  88876  48999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccC--CCeEEEecCCCcEEEEEcCCCcee-eeeccCCCCCcceeeEEeCC---
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKR-CGFSLEPSPNTNTEATFTPD---  155 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~---  155 (235)
                      |++++..  .....+.+|...|.+++|+|+  +.+|++++.|+.|++||++.+... .......|...+.+++|+|+   
T Consensus        87 d~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           87 REENGTW--EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             CCSSSCC--CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             ECCCCcc--eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            9987542  224456789999999999997  789999999999999999876322 12334556677999999997   


Q ss_pred             --------------CcEEEEeCCCCcEEEEEcCCC---ceeeeecCCCcceeEEEeecCC----CEEEEcc--cceEEee
Q 026679          156 --------------GQYVVSGSGDGTLHAWNINTR---NEVACWNGNIGVVACLKWAPRR----AMFVAAS--SVLSFWI  212 (235)
Q Consensus       156 --------------~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~--~~i~iw~  212 (235)
                                    +++|++|+.|+.|++||++..   +.+..+.+|...|.+++|+|++    .+|++++  +.+++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                          478999999999999999754   4667788999999999999986    7899887  8899999


Q ss_pred             CCC
Q 026679          213 PNP  215 (235)
Q Consensus       213 ~~~  215 (235)
                      ++.
T Consensus       245 ~~~  247 (316)
T 3bg1_A          245 CDD  247 (316)
T ss_dssp             CSS
T ss_pred             ccC
Confidence            875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.3e-37  Score=226.62  Aligned_cols=210  Identities=14%  Similarity=0.246  Sum_probs=171.1

Q ss_pred             hhhhhhhcccccceeEEEeecC--CCeeEEEeccceEEEEecCcce--eeeeeeccCCc--eEEEcCC--CCEEEEEecC
Q 026679            4 NRILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGRP--TVAFDQQ--GLVFAVAMEA   75 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~--~~~~~~~--~~~l~~~~~d   75 (235)
                      ++++..+.+|.++|++++|+|+  +++|++|+.|++|++||+++++  ....+..|...  .++|+|+  +.+|++++.|
T Consensus        43 ~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d  122 (297)
T 2pm7_B           43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD  122 (297)
T ss_dssp             BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC
Confidence            3567788999999999999863  8899999999999999998774  44555555544  4999997  8999999999


Q ss_pred             CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC-------------CCeEEEecCCCcEEEEEcCCCcee--eeecc
Q 026679           76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-------------GKSMLLTTTNNNIYVLDAYGGEKR--CGFSL  140 (235)
Q Consensus        76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~  140 (235)
                      +.|++||+++....  ....+.+|...|.+++|+|+             +++|++++.|+.|++||+++++..  ....+
T Consensus       123 ~~v~~wd~~~~~~~--~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l  200 (297)
T 2pm7_B          123 GKVSVVEFKENGTT--SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL  200 (297)
T ss_dssp             SEEEEEEBCSSSCB--CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE
T ss_pred             CcEEEEEecCCCce--eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe
Confidence            99999999875421  13455688999999999997             568999999999999999876521  22345


Q ss_pred             CCCCCcceeeEEeCCC---cEEEEeCCCCcEEEEEcCCCce---eeee--cCCCcceeEEEeecCCCEEEEcc--cceEE
Q 026679          141 EPSPNTNTEATFTPDG---QYVVSGSGDGTLHAWNINTRNE---VACW--NGNIGVVACLKWAPRRAMFVAAS--SVLSF  210 (235)
Q Consensus       141 ~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~v~d~~~~~~---~~~~--~~~~~~v~~~~~~~~~~~l~~~~--~~i~i  210 (235)
                      ..|...|.+++|+|++   ++|++++.|+.|++||+++...   ...+  ..|...|.+++|+|++++|++++  +.+++
T Consensus       201 ~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~l  280 (297)
T 2pm7_B          201 EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL  280 (297)
T ss_dssp             CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred             cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence            5677889999999984   8999999999999999976431   1222  46788999999999999999987  78999


Q ss_pred             eeCCC
Q 026679          211 WIPNP  215 (235)
Q Consensus       211 w~~~~  215 (235)
                      |+...
T Consensus       281 w~~~~  285 (297)
T 2pm7_B          281 WKENL  285 (297)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            99763

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.3e-37  Score=234.95  Aligned_cols=198  Identities=21%  Similarity=0.311  Sum_probs=170.3

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCcee
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT   93 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~   93 (235)
                      .|.+++|+|++++|++|+.|++|++||+.+++....+..|...+  ++|+|+++.|++++.|+.|++||+++++.    .
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~----~  200 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC----S  200 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----E
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee----E
Confidence            49999999999999999999999999999999998888887655  99999999999999999999999987653    2


Q ss_pred             EeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeecc-----CCCCCcceeeEEeCCCcEEEEeCCCCc
Q 026679           94 FLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-----EPSPNTNTEATFTPDGQYVVSGSGDGT  167 (235)
Q Consensus        94 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~  167 (235)
                      ..+ .+...+.+++|+| ++++|++++.|+.|++||+++++....+..     ..|...|.+++|+|++++|++|+.|+.
T Consensus       201 ~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~  279 (393)
T 1erj_A          201 LTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS  279 (393)
T ss_dssp             EEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            222 3556799999999 899999999999999999999887665532     356678999999999999999999999


Q ss_pred             EEEEEcCCC------------ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          168 LHAWNINTR------------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       168 i~v~d~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      |++||+++.            .+...+.+|...|.+++|+|++.+|++++  +.+++||......
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~  344 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP  344 (393)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            999999753            34556778999999999999999999998  7899999976653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-37  Score=229.65  Aligned_cols=204  Identities=16%  Similarity=0.239  Sum_probs=164.1

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCc-------ceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-------NACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-------~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      +|.+.|.+++|+|++++|++|+.|++|++||++.       .+....+..|...+  ++|+|++++|++++.|+.|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            3999999999999999999999999999999853       34556666776544  99999999999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC--CcEEE
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD--GQYVV  160 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~  160 (235)
                      ++...........+.+|...|.+++|+|++++|++++.|+.|++||..++.......+..|...|.+++|+|+  +.+|+
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  215 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC  215 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence            9643322223456778999999999999999999999999999999987643333345567788999999998  77999


Q ss_pred             EeCCCCcEEEEEcCCC--------ceeeeecC-CCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          161 SGSGDGTLHAWNINTR--------NEVACWNG-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      +++.|+.|++||++.+        .....+.. |...|.+++|++++ +|++++  +.+++|+....
T Consensus       216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred             EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence            9999999999999764        33444554 88999999999776 666666  88999998654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-37  Score=235.42  Aligned_cols=211  Identities=14%  Similarity=0.304  Sum_probs=181.0

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC--cceeeeeeeccCCce--EEEcCC--CCEEEEEecCCe
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR--VNACQGILRLRGRPT--VAFDQQ--GLVFAVAMEAGA   77 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~~--~~~~~~--~~~l~~~~~dg~   77 (235)
                      |+++..+++|.+.|++++|+|++++|++++.||.|++||+.  +++....+..|...+  ++|+++  +++|++++.||.
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            56788999999999999999999999999999999999998  556777777776555  889876  999999999999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccC--CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-  154 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-  154 (235)
                      |++||+.+.+.  ........|...|.+++|+|+  +.+|++++.|+.|++||++.+..........+...|.+++|+| 
T Consensus        81 v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           81 VLIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             EEEEEEETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             EEEEEcCCCce--eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence            99999987642  124556678899999999999  9999999999999999999886555555566778899999999 


Q ss_pred             ------------CCcEEEEeCCCCcEEEEEcCCCc----eeeeecCCCcceeEEEeecC---CCEEEEcc--cceEEeeC
Q 026679          155 ------------DGQYVVSGSGDGTLHAWNINTRN----EVACWNGNIGVVACLKWAPR---RAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       155 ------------~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--~~i~iw~~  213 (235)
                                  ++++|++++.||.|++||++++.    ....+.+|...|.+++|+|+   +.+|++++  +.+++|++
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence                        69999999999999999998765    44667789999999999999   89999997  78999999


Q ss_pred             CCC
Q 026679          214 NPS  216 (235)
Q Consensus       214 ~~~  216 (235)
                      +..
T Consensus       239 ~~~  241 (379)
T 3jrp_A          239 DNE  241 (379)
T ss_dssp             SST
T ss_pred             CCC
Confidence            875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-36  Score=225.13  Aligned_cols=210  Identities=27%  Similarity=0.469  Sum_probs=180.8

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~   79 (235)
                      ++++.+..+++|...|.+++|+|++++|++|+.|+.|++||+++++....+..+...+  ++|+|++++|++++.||.|+
T Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
T 4ery_A           95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  174 (312)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence            4567778889999999999999999999999999999999999999888888776554  89999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe-CCCcE
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQY  158 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~  158 (235)
                      +||+++.+.   .......+...+..++|+|++++|++++.|+.|++||+++++....+..+..........++ +++.+
T Consensus       175 ~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
T 4ery_A          175 IWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW  251 (312)
T ss_dssp             EEETTTCCE---EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred             EEECCCCce---eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcE
Confidence            999987653   12223456678999999999999999999999999999999888777655443333333444 67899


Q ss_pred             EEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc----cceEEeeCC
Q 026679          159 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS----SVLSFWIPN  214 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~i~iw~~~  214 (235)
                      |++|+.||.|++||+++++.+..+.+|...|.+++|+|++.++++++    +.+++|+.+
T Consensus       252 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999999999999999999999999999999999999874    679999865

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.6e-37  Score=234.40  Aligned_cols=206  Identities=12%  Similarity=0.095  Sum_probs=170.0

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee----eccCC--ceEEEcCCCCEEEEEecCCeEEEEe
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL----RLRGR--PTVAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~~~--~~~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      ...+|...|++++|+|++. +++++.||+|++||+.+++.....    ..|..  .+++|+|++++|++++.|+.|++||
T Consensus        89 ~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd  167 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD  167 (357)
T ss_dssp             EEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            3456889999999999875 556788999999999887654332    23443  3499999999999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCC-eEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC-CcEEE
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD-GQYVV  160 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~  160 (235)
                      +++++.    ...+..|...|.+++|+|++. .+++++.|+.|++||+++++....+....+...+.+++|+|+ +.+|+
T Consensus       168 ~~~~~~----~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          168 LSQKAV----LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             TTTTEE----EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred             CCCCcE----EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence            987654    666778999999999999875 688999999999999999988877777777788999999997 56889


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCCCCC
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      +|+.|+.|++||+++++.+..+.+|...|++++|+|++ ++|++++  +.|+|||+++.+..
T Consensus       244 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence            99999999999999999999999999999999999987 5788887  78999999876543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.4e-36  Score=228.19  Aligned_cols=208  Identities=18%  Similarity=0.237  Sum_probs=171.7

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      +....+.+|...|.+++|+|++.++++++.|++|++||+++++....+..|...+  ++|+|+++.|++++.|+.|++||
T Consensus        67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd  146 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN  146 (343)
T ss_dssp             EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred             cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence            4556788999999999999999999999999999999999999999998887655  99999999999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCC----------CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEE
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDG----------KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF  152 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~  152 (235)
                      +.....  ........|...|.+++|+|++          .+|++++.|+.|++||. ..+....+  ..|...|.+++|
T Consensus       147 ~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~--~~h~~~v~~~~~  221 (343)
T 2xzm_R          147 ILGECK--FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTF--KAHESNVNHLSI  221 (343)
T ss_dssp             SSSCEE--EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEE--ECCSSCEEEEEE
T ss_pred             ccCCce--eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEE--cCccccceEEEE
Confidence            974221  0111123678899999999987          68999999999999994 44444444  455677999999


Q ss_pred             eCCCcEEEEeCCCCcEEEEEcCCC-ceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCCCC
Q 026679          153 TPDGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSN  218 (235)
Q Consensus       153 ~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~  218 (235)
                      +|+|++|++|+.||.|++||+.+. .....+ .+...|.+++|+|++.++++++ +.+++|++.+...
T Consensus       222 s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~  288 (343)
T 2xzm_R          222 SPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK  288 (343)
T ss_dssp             CTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCS
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCC
Confidence            999999999999999999999543 334444 3556799999999999988776 7899999976543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.6e-37  Score=232.06  Aligned_cols=201  Identities=10%  Similarity=0.081  Sum_probs=165.1

Q ss_pred             cccceeEEEeecCCCeeEE--EeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           13 HKERVISLCMSPVNDSFMS--GSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s--~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      +...+.+++|+|||+++++  ++.|++|+|||+++++.+..+..+. +..++|+|+|+++++++.+ .+.+|+..++.. 
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~-  209 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC-  209 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE-
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcc-
Confidence            4456889999999998764  4579999999999999888876443 4459999999999999865 566666655442 


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecCCC----cEEEEEcCCCcee--eeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN----NIYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                       ........|...+.+++|+|+++.+++++.|+    .++.|++......  .......+...|++++|+|+|++||+|+
T Consensus       210 -~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          210 -IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             -EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             -eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence             22334456788999999999999999998877    5888998776542  2334456667899999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeee-cCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          164 GDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       164 ~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      .|+.|+|||+++++++..+ .+|..+|++++|+|||++|++++  ++|+||++...
T Consensus       289 ~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          289 NDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999998875 78999999999999999999998  88999999644

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-37  Score=235.22  Aligned_cols=207  Identities=16%  Similarity=0.175  Sum_probs=167.6

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce---eeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA---CQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~   79 (235)
                      +.+..+.+|...|++++|+|++++|++++.|++|++||+.+++   ....+..+...+  ++|+|+++.|++++.|+.|+
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  125 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS  125 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred             EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence            6778899999999999999999999999999999999998877   455555555444  99999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecC-CCcceeEEEEccCCCeEEEecCCCcEEEEEcCC------------------Cceeeeecc
Q 026679           80 LFDSRSYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG------------------GEKRCGFSL  140 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~------------------~~~~~~~~~  140 (235)
                      +||+++.+.... ...+.. |...|.+++|+|++++|++++.|+.|++||++.                  ++....+  
T Consensus       126 iwd~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  202 (377)
T 3dwl_C          126 VCYFEQENDWWV-SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--  202 (377)
T ss_dssp             ECCC-----CCC-CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--
T ss_pred             EEEECCccccee-eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--
Confidence            999987653212 233444 899999999999999999999999999999863                  2333333  


Q ss_pred             CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCce----eeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679          141 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE----VACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP  215 (235)
Q Consensus       141 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~  215 (235)
                       .|...|.+++|+|++++|++++.||.|++||+++++.    +..+.+|..+|.+++|+|++++|++++ +.+.+|+...
T Consensus       203 -~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~  281 (377)
T 3dwl_C          203 -PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNE  281 (377)
T ss_dssp             -CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC
T ss_pred             -cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCC
Confidence             6677899999999999999999999999999999887    788899999999999999999999998 6677887763

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.4e-37  Score=243.47  Aligned_cols=200  Identities=22%  Similarity=0.392  Sum_probs=177.0

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      +++++..+.+|...|++++|+|++++|++++.|+.|++||. +++....+..+...+  ++|+|++++|++++.|+.|++
T Consensus       374 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~  452 (577)
T 2ymu_A          374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL  452 (577)
T ss_dssp             TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEE
Confidence            35567778899999999999999999999999999999995 567777777777655  899999999999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      ||... +    ....+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.  .|...|++++|+|++++|+
T Consensus       453 w~~~~-~----~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~--~h~~~v~~l~~s~dg~~l~  524 (577)
T 2ymu_A          453 WNRNG-Q----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQTIA  524 (577)
T ss_dssp             EETTS-C----EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE--CCSSCEEEEEECTTSSCEE
T ss_pred             EECCC-C----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe--CCCCCEEEEEEcCCCCEEE
Confidence            99643 2    25566789999999999999999999999999999995 666666655  4556799999999999999


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      +++.||.|++||. +++.+..+.+|...|++++|+||+++|++++  +.|++||
T Consensus       525 s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          525 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            9999999999996 7888999999999999999999999999987  7799997

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.7e-36  Score=230.64  Aligned_cols=212  Identities=15%  Similarity=0.216  Sum_probs=172.9

Q ss_pred             chhhhhhhhc--ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc---------------------
Q 026679            2 YDNRILRYFK--GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP---------------------   58 (235)
Q Consensus         2 ~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---------------------   58 (235)
                      ++|++++.++  +|...|++++|+|+|++|++|+.||+|++||+++++.+..+..|...                     
T Consensus       133 ~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~  212 (420)
T 4gga_A          133 SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIH  212 (420)
T ss_dssp             TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             CCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCcee
Confidence            4566665554  67889999999999999999999999999999988776665544222                     


Q ss_pred             ----------------------eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeE-
Q 026679           59 ----------------------TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM-  115 (235)
Q Consensus        59 ----------------------~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-  115 (235)
                                            .+.++|++..+++++.|+.+++|+....+...........|...|.+++|+|++..+ 
T Consensus       213 ~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~l  292 (420)
T 4gga_A          213 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL  292 (420)
T ss_dssp             EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEE
T ss_pred             EeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEE
Confidence                                  155667777888888888888888777655444455667788999999999976544 


Q ss_pred             EE--ecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC--CCCcEEEEEcCCCceeeeecCCCcceeE
Q 026679          116 LL--TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS--GDGTLHAWNINTRNEVACWNGNIGVVAC  191 (235)
Q Consensus       116 ~~--~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~  191 (235)
                      ++  |+.|+.|++||+.+++....+..+   ..+.++.|+|+++.+++++  .|+.|++||+++++++..+.+|.+.|++
T Consensus       293 a~~~gs~D~~I~iwd~~t~~~~~~~~~~---~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~  369 (420)
T 4gga_A          293 ATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS  369 (420)
T ss_dssp             EEEECTTTCEEEEEETTTTEEEEEEECS---SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEeecCCCEEEEEeCCccccceeeccc---cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence            43  457999999999999988776644   4588999999999887654  7999999999999999999999999999


Q ss_pred             EEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          192 LKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       192 ~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      ++|+|+|.+|++++  ++|++|++...
T Consensus       370 l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          370 LTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             EEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            99999999999998  78999998653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.1e-36  Score=244.67  Aligned_cols=206  Identities=21%  Similarity=0.296  Sum_probs=178.2

Q ss_pred             hhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcc-----eeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679            8 RYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVN-----ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~   79 (235)
                      ..+++|.+.|++++|+|++ ++|++|+.|++|++||+...     .....+..|...+  ++|+|++++|++|+.||.|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence            4578999999999999875 78999999999999998753     3455667776554  99999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeee-ccCCCCCcceeeEEeCCC--
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDG--  156 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~i~~~~~~~~~--  156 (235)
                      +||+.++..    ...+.+|...|.+++|+|++++|++++.|+.|++||.......... ....|...|.+++|+|++  
T Consensus       456 vwd~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          456 LWDLAAGVS----TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             EEETTTTEE----EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             EEECCCCcc----eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            999987653    5667789999999999999999999999999999998665433222 224566789999999986  


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      ..|++++.|+.|++||+++++....+.+|.+.|.+++|+|++++|++++  +.|++||+...+
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred             ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            6899999999999999999999999999999999999999999999998  889999997654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.1e-35  Score=238.98  Aligned_cols=210  Identities=17%  Similarity=0.242  Sum_probs=178.9

Q ss_pred             hhhhhhhcccccceeEEEeecCCC-eeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679            4 NRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      ++....+.+|.+.|++++|+|++. .|++|+.|++|++||..+++....+..|...+  ++|+|++++|++++.|+.|++
T Consensus       137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~l  216 (611)
T 1nr0_A          137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL  216 (611)
T ss_dssp             CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEE
Confidence            455667899999999999999986 59999999999999999998888888887554  999999999999999999999


Q ss_pred             EeccCCCCCCceeEee-c------CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec--------------
Q 026679           81 FDSRSYDKGPFDTFLV-G------GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS--------------  139 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~-~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--------------  139 (235)
                      ||+.+++.    ...+ .      +|...|.+++|+|++++|++++.|++|++||+++++....+.              
T Consensus       217 wd~~~g~~----~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  292 (611)
T 1nr0_A          217 YNGVDGTK----TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW  292 (611)
T ss_dssp             EETTTCCE----EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred             EECCCCcE----eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence            99987653    2223 1      789999999999999999999999999999999877654332              


Q ss_pred             ---------------------------cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee-cCCCcceeE
Q 026679          140 ---------------------------LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVAC  191 (235)
Q Consensus       140 ---------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~  191 (235)
                                                 ...|...|.+++|+|+|++|++++.|+.|++||+.+++....+ .+|...|.+
T Consensus       293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~  372 (611)
T 1nr0_A          293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG  372 (611)
T ss_dssp             CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEE
T ss_pred             cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEE
Confidence                                       2356678999999999999999999999999999998877665 578899999


Q ss_pred             EEeecCCCEEEEcc-cceEEeeCCCCC
Q 026679          192 LKWAPRRAMFVAAS-SVLSFWIPNPSS  217 (235)
Q Consensus       192 ~~~~~~~~~l~~~~-~~i~iw~~~~~~  217 (235)
                      ++|++++.++..+. +.+++|+.....
T Consensus       373 ~~~s~~~~l~s~s~d~~v~~w~~~~~~  399 (611)
T 1nr0_A          373 IKTTSKGDLFTVSWDDHLKVVPAGGSG  399 (611)
T ss_dssp             EEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred             EEECCCCcEEEEEcCCceEEeecCCcc
Confidence            99998875444333 889999987643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.7e-36  Score=234.57  Aligned_cols=205  Identities=15%  Similarity=0.205  Sum_probs=164.1

Q ss_pred             hhhcccccceeEEEeecC-CCeeEEEeccceEEEEecCcceeeeee--eccC--CceEEEcC-CCCEEEEEecCCeEEEE
Q 026679            8 RYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNACQGIL--RLRG--RPTVAFDQ-QGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~--~~~~~~~~-~~~~l~~~~~dg~v~i~   81 (235)
                      ....+|...|+||+|+|. +++||+|+.||+|+|||+.+++....+  .+|.  +.+++|+| ++.+|++++.||+|++|
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            344578889999999994 578999999999999999877654443  3454  44599998 68999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-EEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVV  160 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  160 (235)
                      |+++...  ........+...+.+++|+|++++|++++.||.|++||++.. .+.  .+..|...|.+++|+|+++ +|+
T Consensus       193 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~--~~~~h~~~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          193 DFKGNIL--RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELW--NLRMHKKKVTHVALNPCCDWFLA  267 (435)
T ss_dssp             ETTSCEE--EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCC--CSBCCSSCEEEEEECTTCSSEEE
T ss_pred             eccCCce--eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeE--EEecccceEEeeeecCCCceEEE
Confidence            9976432  111112233456789999999999999999999999998654 333  3445667899999999876 788


Q ss_pred             EeCCCCcEEEEEcCCCceeeee---cCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          161 SGSGDGTLHAWNINTRNEVACW---NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +++.|+.|++||+++.+....+   .+|...|++++|+|++.+|++++  +.|++|++....
T Consensus       268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred             EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence            9999999999999887654433   57889999999999999999998  789999997643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.1e-37  Score=233.64  Aligned_cols=206  Identities=10%  Similarity=0.108  Sum_probs=167.5

Q ss_pred             hcccccceeEEEeecCCCeeEEEeccceEEEEecCcc--eeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC
Q 026679           10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      ++.|.++|++++|+|++++|++++.|+.|++||+.++  +....+..|...+  ++|+|++++|++++.|+.|++||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            4456789999999999999999999999999999988  6777787776554  99999999999999999999999988


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce---eeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      ... ......+..|...|.+++|+|++++|++++.|+.|++||+++++.   ...+.. .|...|.+++|+|++++|+++
T Consensus        87 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           87 DGT-WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             --C-CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS-SCCSCEEEEEECTTSSEEEEE
T ss_pred             CCc-eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCCCEEEEE
Confidence            661 122555678999999999999999999999999999999998763   333332 266789999999999999999


Q ss_pred             CCCCcEEEEEcC------------------CCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          163 SGDGTLHAWNIN------------------TRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       163 ~~dg~i~v~d~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      +.|+.|++||++                  .++.+..+ +|...|.+++|+|++++|++++  +.+++|++.....
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            999999999985                  34556666 8999999999999999999997  7899999987654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.2e-35  Score=227.07  Aligned_cols=210  Identities=15%  Similarity=0.200  Sum_probs=179.0

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      +++....+..| ..+....|+|++++|++++.|+.|++||+.+++....+..|...+  ++|+|++++|++++.|+.|++
T Consensus        87 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i  165 (420)
T 3vl1_A           87 IRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKI  165 (420)
T ss_dssp             SEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEE
Confidence            34555666666 455556789999999999999999999999998888877776554  999999999999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC------------------
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP------------------  142 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------------------  142 (235)
                      ||+++.+.    ...+.+|...|.+++|+|++++|++++.|+.|++||+++++....+..+.                  
T Consensus       166 wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  241 (420)
T 3vl1_A          166 WSVKDGSN----PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ  241 (420)
T ss_dssp             EETTTCCC----CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred             EeCCCCcC----ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence            99988765    45567899999999999999999999999999999999998887766432                  


Q ss_pred             ----CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-CCCcceeEEEeecCCC-EEEEcc--cceEEeeCC
Q 026679          143 ----SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPN  214 (235)
Q Consensus       143 ----~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~--~~i~iw~~~  214 (235)
                          +...+.+++|+|++++|++++.||.|++||+++++.+..+. .|...|.+++|+|++. +|++++  +.+++||++
T Consensus       242 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          242 LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence                12456777889999999999999999999999988877764 4788999999999998 888887  789999998


Q ss_pred             CCC
Q 026679          215 PSS  217 (235)
Q Consensus       215 ~~~  217 (235)
                      ...
T Consensus       322 ~~~  324 (420)
T 3vl1_A          322 SPE  324 (420)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.3e-35  Score=224.66  Aligned_cols=208  Identities=14%  Similarity=0.146  Sum_probs=179.4

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee--ccCC--ceEEEcCCCCEEEEEecCCeEEEE
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR--LRGR--PTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~--~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      .+..+.+|...|.+++|+|++++|++++.|+.|++||+++++......  .+..  ..++|+|++++|++++.|+.+++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            677888999999999999999999999999999999998887555443  3333  349999999999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC------------------CCceeeeeccCCC
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY------------------GGEKRCGFSLEPS  143 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~------------------~~~~~~~~~~~~~  143 (235)
                      |++..............|...|.+++|+|++++|++++.|+.|++||++                  .++....+.  .+
T Consensus       124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  201 (372)
T 1k8k_C          124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--SS  201 (372)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--CC
T ss_pred             EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC--CC
Confidence            9988653222233446788999999999999999999999999999964                  455554443  56


Q ss_pred             CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679          144 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP  215 (235)
Q Consensus       144 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~  215 (235)
                      ...+.+++|+|++++|++++.||.|++||+++++.+..+..|..+|.+++|+|++.+++++. +.+++|++..
T Consensus       202 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          202 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence            67799999999999999999999999999999999999999999999999999999999887 8899999976

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-35  Score=222.19  Aligned_cols=206  Identities=16%  Similarity=0.196  Sum_probs=178.6

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      ..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..+...+  ++|+|++++|++++.||.|++||+.+
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~  105 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN  105 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            4578999999999999999999999999999999999999999998777654  99999999999999999999999988


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC-----CcEEEEEcCCCcee-----------eeeccCCCCCccee
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKR-----------CGFSLEPSPNTNTE  149 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~-----------~~~~~~~~~~~i~~  149 (235)
                      .+.    ..... +...+.+++|+|+++++++++.+     +.|.+||+......           ..+..+.....+.+
T Consensus       106 ~~~----~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          106 GQC----VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             CCE----EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             CcE----EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            663    33333 77899999999999999999998     99999999766432           22222333237999


Q ss_pred             eEEeCCCcEEEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          150 ATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       150 ~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      ++|+|++++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++.+|++++  +.+++||++....
T Consensus       181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence            99999999999999999999999998 788888999999999999999999999997  7899999976543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.7e-35  Score=219.70  Aligned_cols=209  Identities=20%  Similarity=0.306  Sum_probs=178.3

Q ss_pred             hhhhhhhcccccceeEEEeecC-CCeeEEEeccceEEEEecCcce-----eeeeeeccCCce--EEEcCCCCEEEEEecC
Q 026679            4 NRILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNA-----CQGILRLRGRPT--VAFDQQGLVFAVAMEA   75 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~~~~--~~~~~~~~~l~~~~~d   75 (235)
                      .++..+|+||.+.|++++|+|+ +++|+||+.|++|++||+.+.+     +...+..|...+  ++|+|++++|++++.|
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            3455679999999999999997 5899999999999999987653     445566666544  9999999999999999


Q ss_pred             CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC
Q 026679           76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus        76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      +.|++|+......    ......+...+....++++++.|++++.|+.+++||+...... ......+...+..++|+++
T Consensus       108 ~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~  182 (340)
T 4aow_A          108 GTLRLWDLTTGTT----TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY-TVQDESHSEWVSCVRFSPN  182 (340)
T ss_dssp             SEEEEEETTTTEE----EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-EECSSSCSSCEEEEEECSC
T ss_pred             ccceEEeecccce----eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE-EEEeccccCcccceEEccC
Confidence            9999999887553    4555567788889999999999999999999999998766543 3445566778999999886


Q ss_pred             C--cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          156 G--QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       156 ~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +  .++++++.|+.|++||+++++.+..+.+|..+|++++|+|++++|++++  +.+++||++...
T Consensus       183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~  248 (340)
T 4aow_A          183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK  248 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence            4  5788999999999999999999999999999999999999999999998  789999997654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-36  Score=235.55  Aligned_cols=205  Identities=11%  Similarity=0.046  Sum_probs=170.5

Q ss_pred             hhcccccceeEEEeecC------CCeeEEEeccceEEEEecCcceee-----------eeeeccCCce--EEEcCCCCEE
Q 026679            9 YFKGHKERVISLCMSPV------NDSFMSGSLDHSVRIWDLRVNACQ-----------GILRLRGRPT--VAFDQQGLVF   69 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~------~~~l~s~~~d~~i~vwd~~~~~~~-----------~~~~~~~~~~--~~~~~~~~~l   69 (235)
                      .+.+|.+.|.+++|+|+      +.+||+++.||+|++||+..+...           ..+..|...+  ++|+++ ..|
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l  280 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV  280 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence            35678899999999996      579999999999999999766421           2445555444  888886 489


Q ss_pred             EEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEE--EEccCC-CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc
Q 026679           70 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI--KFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT  146 (235)
Q Consensus        70 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  146 (235)
                      ++|+.||+|++||+++...   ....+..|...|.++  +|+|++ .+|++++.|++|++||+++++....+..+.....
T Consensus       281 asgs~DgtV~lWD~~~~~~---~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~  357 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEV---PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN  357 (524)
T ss_dssp             EEEETTSEEEEEETTBCSS---CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred             EEEeCCCEEEEEECCCCCC---ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence            9999999999999987532   234466899999999  578887 8899999999999999998876655544433234


Q ss_pred             ceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          147 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +.+++|+|+++.+++++.|+.|++||++++..+..+.+|.+.|++++|+|++++|++|+  +++++|++....
T Consensus       358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~  430 (524)
T 2j04_B          358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL  430 (524)
T ss_dssp             CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST
T ss_pred             ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh
Confidence            78899999999999999999999999999998888889999999999999999999998  889999986543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.8e-35  Score=215.77  Aligned_cols=211  Identities=16%  Similarity=0.221  Sum_probs=175.2

Q ss_pred             chhhhhhhhc--ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-----------------------
Q 026679            2 YDNRILRYFK--GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-----------------------   56 (235)
Q Consensus         2 ~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----------------------   56 (235)
                      ++|++++.++  +|...|++++|+|++++|++|+.||+|++||+++++.+..+..|.                       
T Consensus        53 ~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~  132 (318)
T 4ggc_A           53 SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIH  132 (318)
T ss_dssp             TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             CCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceE
Confidence            4666666654  678899999999999999999999999999999887766654431                       


Q ss_pred             ------------------C--ceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEE
Q 026679           57 ------------------R--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML  116 (235)
Q Consensus        57 ------------------~--~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  116 (235)
                                        .  ..+.+.++++++++++.||.|++||+++++...........+...|.+++++|++..++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  212 (318)
T 4ggc_A          133 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL  212 (318)
T ss_dssp             EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEE
T ss_pred             eeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEE
Confidence                              1  12667888999999999999999999987655555566677888999999999776543


Q ss_pred             ---EecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe--CCCCcEEEEEcCCCceeeeecCCCcceeE
Q 026679          117 ---LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG--SGDGTLHAWNINTRNEVACWNGNIGVVAC  191 (235)
Q Consensus       117 ---~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~v~~  191 (235)
                         +++.++.|++||.+.........   +...+..+.|+|+++.++++  +.|+.|++||+++++++..+.+|.+.|++
T Consensus       213 ~~~~~~~~~~i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~  289 (318)
T 4ggc_A          213 ATGGGTSDRHIRIWNVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS  289 (318)
T ss_dssp             EEEECTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEecCCCCEEEEEeccccccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence               56778999999998887765543   33458999999999888764  47999999999999999999999999999


Q ss_pred             EEeecCCCEEEEcc--cceEEeeCCC
Q 026679          192 LKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       192 ~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      ++|+|++++|++++  +.|+|||+..
T Consensus       290 l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          290 LTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEcCCCCEEEEEecCCeEEEEECCC
Confidence            99999999999998  8899999854

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.7e-36  Score=222.92  Aligned_cols=208  Identities=16%  Similarity=0.211  Sum_probs=168.2

Q ss_pred             hhhhhcccccceeEEEeec--CCCeeEEEeccceEEEEecCcce--eeeeeeccC--CceEEEcCC--CCEEEEEecCCe
Q 026679            6 ILRYFKGHKERVISLCMSP--VNDSFMSGSLDHSVRIWDLRVNA--CQGILRLRG--RPTVAFDQQ--GLVFAVAMEAGA   77 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~--~~~~~~~~~--~~~l~~~~~dg~   77 (235)
                      ++..+++|.++|++++|+|  ++++|++|+.|++|++||+++++  ....+..|.  +..++|+|+  +.+|++++.|+.
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~  128 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA  128 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence            4567899999999999986  48899999999999999998874  445555555  445999997  789999999999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccC-----------------CCeEEEecCCCcEEEEEcCCCc-eeeeec
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-----------------GKSMLLTTTNNNIYVLDAYGGE-KRCGFS  139 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~d~~i~~~d~~~~~-~~~~~~  139 (235)
                      |++||++.... .........|...+.+++|+|+                 +++|++++.|+.|++||++... ......
T Consensus       129 i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  207 (316)
T 3bg1_A          129 ISLLTYTGEGQ-WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK  207 (316)
T ss_dssp             EEEEEECSSSC-EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC
T ss_pred             EEEEecCCCCC-cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee
Confidence            99999986532 0012334578889999999997                 4689999999999999997552 122334


Q ss_pred             cCCCCCcceeeEEeCCC----cEEEEeCCCCcEEEEEcCCCc----eeeeecCCCcceeEEEeecCCCEEEEcc--cceE
Q 026679          140 LEPSPNTNTEATFTPDG----QYVVSGSGDGTLHAWNINTRN----EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLS  209 (235)
Q Consensus       140 ~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~  209 (235)
                      +..|...|.+++|+|++    ++|++++.|+.|++||+++..    ....+..|...|.+++|+|++.+|++++  +.++
T Consensus       208 l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~  287 (316)
T 3bg1_A          208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT  287 (316)
T ss_dssp             CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEE
T ss_pred             cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEE
Confidence            55677889999999986    899999999999999997631    2234566888999999999999999987  7899


Q ss_pred             EeeCC
Q 026679          210 FWIPN  214 (235)
Q Consensus       210 iw~~~  214 (235)
                      +|+..
T Consensus       288 lw~~~  292 (316)
T 3bg1_A          288 LWKES  292 (316)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.8e-35  Score=222.16  Aligned_cols=207  Identities=11%  Similarity=0.057  Sum_probs=177.8

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce--eeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEecc
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~   84 (235)
                      .+..|.++|++++|+|++++|++++.|+.|++||+.+++  ....+..|...+  ++|+|++++|++++.||.|++||+.
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            355699999999999999999999999999999999887  777887776554  9999999999999999999999997


Q ss_pred             CCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCcee--eeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           85 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      +.+.  ........|...+.+++|+|++++|++++.|+.|++||++.++..  .......|...|.+++|+|++++|+++
T Consensus        83 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  160 (372)
T 1k8k_C           83 GRTW--KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  160 (372)
T ss_dssp             TTEE--EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             CCee--eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence            7542  123344678899999999999999999999999999999887631  112224556789999999999999999


Q ss_pred             CCCCcEEEEEc------------------CCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          163 SGDGTLHAWNI------------------NTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       163 ~~dg~i~v~d~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +.||.|++||+                  ..++.+..+..|...|.+++|+|++.+|++++  +.+++||++..+
T Consensus       161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  235 (372)
T 1k8k_C          161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM  235 (372)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred             cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            99999999995                  46778888889999999999999999999997  789999997654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.8e-35  Score=223.80  Aligned_cols=207  Identities=15%  Similarity=0.246  Sum_probs=174.8

Q ss_pred             hhhhhcccccceeEEEeec-CCCeeEEEeccceEEEEecCcc-------eeeeeeeccCCce--EEEcCCC-CEEEEEec
Q 026679            6 ILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVN-------ACQGILRLRGRPT--VAFDQQG-LVFAVAME   74 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~--~~~~~~~-~~l~~~~~   74 (235)
                      .+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++       +.+..+..|...+  ++|+|++ .+|++++.
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence            4556789999999999999 8999999999999999999887       5567777776554  9999998 69999999


Q ss_pred             CCeEEEEeccCCCCCCceeEee--cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeee-ccCCCCCcceeeE
Q 026679           75 AGAIKLFDSRSYDKGPFDTFLV--GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEAT  151 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~i~~~~  151 (235)
                      ||.|++||+++++.    ...+  ..|...|.+++|+|++++|++++.|+.|++||+++++....+ ..+. ...+.++.
T Consensus       153 dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~  227 (402)
T 2aq5_A          153 DNVILVWDVGTGAA----VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE-GTRPVHAV  227 (402)
T ss_dssp             TSCEEEEETTTTEE----EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSC-SSSCCEEE
T ss_pred             CCEEEEEECCCCCc----cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCC-CCcceEEE
Confidence            99999999987653    4455  678999999999999999999999999999999999887766 3332 23488999


Q ss_pred             EeCCCcEEEEe---CCCCcEEEEEcCCCce-eeeec-CCCcceeEEEeecCCCEEEE-cc--cceEEeeCCCCC
Q 026679          152 FTPDGQYVVSG---SGDGTLHAWNINTRNE-VACWN-GNIGVVACLKWAPRRAMFVA-AS--SVLSFWIPNPSS  217 (235)
Q Consensus       152 ~~~~~~~l~~~---~~dg~i~v~d~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~-~~--~~i~iw~~~~~~  217 (235)
                      |+|++++|++|   +.|+.|++||+++++. +.... .|...+.+++|+|++.+|++ ++  +.|++|++....
T Consensus       228 ~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             ECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             EcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            99999999999   8999999999988664 32322 46778999999999999864 43  779999998765

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.5e-36  Score=227.25  Aligned_cols=211  Identities=15%  Similarity=0.187  Sum_probs=174.2

Q ss_pred             chhhhhhhhcccccceeEEEeec-CCCeeEEEeccceEEEEecCcceeeeee---eccCCce--EEEcCCCCEEEEEecC
Q 026679            2 YDNRILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGIL---RLRGRPT--VAFDQQGLVFAVAMEA   75 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~~~~--~~~~~~~~~l~~~~~d   75 (235)
                      ++++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++....+   ..+...+  ++|+|+++.|++++.|
T Consensus       103 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  182 (366)
T 3k26_A          103 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD  182 (366)
T ss_dssp             TTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             hhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC
Confidence            45677888999999999999999 8899999999999999999999888887   4454444  9999999999999999


Q ss_pred             CeEEEEeccCCCCCC------------------------ceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC
Q 026679           76 GAIKLFDSRSYDKGP------------------------FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG  131 (235)
Q Consensus        76 g~v~i~d~~~~~~~~------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~  131 (235)
                      |.|++||+++.+...                        ........|...|.+++|+  ++++++++.|+.|++||+++
T Consensus       183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~  260 (366)
T 3k26_A          183 HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGK  260 (366)
T ss_dssp             SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESS
T ss_pred             CCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCC
Confidence            999999998643200                        0012233488899999998  77999999999999999987


Q ss_pred             Cce------------eeeeccCCCCCcceeeEEeCC--CcEEEEeCCCCcEEEEEcCCCcee----eeecCC--CcceeE
Q 026679          132 GEK------------RCGFSLEPSPNTNTEATFTPD--GQYVVSGSGDGTLHAWNINTRNEV----ACWNGN--IGVVAC  191 (235)
Q Consensus       132 ~~~------------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~--~~~v~~  191 (235)
                      ++.            ........+...+.+++|+|+  +++|++++.||.|++||+.+++..    ..+..|  ...|.+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~  340 (366)
T 3k26_A          261 MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQ  340 (366)
T ss_dssp             TTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEE
T ss_pred             ccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEE
Confidence            654            112233345567999999999  999999999999999999987654    367777  789999


Q ss_pred             EEeecCCCEEEEcc--cceEEeeCC
Q 026679          192 LKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       192 ~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      ++|+|++++|++++  +.+++||+.
T Consensus       341 ~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          341 TSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99999999999998  789999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3e-35  Score=223.95  Aligned_cols=208  Identities=17%  Similarity=0.197  Sum_probs=173.0

Q ss_pred             hhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeec--cCCc--eEEEcC-CCCEEEEEecCCeE
Q 026679            5 RILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRL--RGRP--TVAFDQ-QGLVFAVAMEAGAI   78 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~--~~~~~~-~~~~l~~~~~dg~v   78 (235)
                      ++.+.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+..  +...  .++|+| ++..|++++.|+.|
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            3455678999999999999998 8999999999999999998887777653  5444  399999 78999999999999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-  157 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  157 (235)
                      ++||++....  ........+...|.+++|+|++++|++++.|+.|++||+ +++....+.  .|...|.+++|+|+++ 
T Consensus       144 ~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~--~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          144 TLRDFSGSVI--QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK--LHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             EEEETTSCEE--EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE--CSSSCEEEEEECSSCTT
T ss_pred             EEEECCCCce--EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec--cCCCcEEEEEECCCCCC
Confidence            9999985221  111112334578999999999999999999999999999 455555544  4557799999999999 


Q ss_pred             EEEEeCCCCcEEEEEcCC----CceeeeecCCCcceeEEEeec-CCCEEEEcc--cceEEeeCCCCCC
Q 026679          158 YVVSGSGDGTLHAWNINT----RNEVACWNGNIGVVACLKWAP-RRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      +|++++.|+.|++||+++    +..+..+ +|...|.+++|+| ++.+|++++  +.+++||++....
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            999999999999999987    5566656 6899999999999 999999998  7899999976544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.8e-35  Score=240.88  Aligned_cols=208  Identities=21%  Similarity=0.300  Sum_probs=179.0

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      ..+.+.+|...|.+++|+|++++|++|+.|++|++||+.++.....+..|...+  ++|+|+++.|++++.|+.|++||.
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence            345688999999999999999999999999999999999999999998887655  899999999999999999999998


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCC--CeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDG--KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                      ..... ........+|...|.+++|+|++  ..+++++.|+.|++||+++++....+.  .|...|.+++|+|++++|++
T Consensus       502 ~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~--~h~~~v~~v~~spdg~~l~s  578 (694)
T 3dm0_A          502 LGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA--GHTGYVSTVAVSPDGSLCAS  578 (694)
T ss_dssp             TSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEE
T ss_pred             CCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc--CCCCCEEEEEEeCCCCEEEE
Confidence            64321 00011124678889999999986  579999999999999999988776554  55677999999999999999


Q ss_pred             eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCCC
Q 026679          162 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSS  217 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~  217 (235)
                      |+.||.|++||+++++.+..+.. ...|.+++|+|++.++++++ +.+++||+++..
T Consensus       579 g~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~  634 (694)
T 3dm0_A          579 GGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKS  634 (694)
T ss_dssp             EETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred             EeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCC
Confidence            99999999999999998888764 46899999999999998887 779999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3e-35  Score=226.36  Aligned_cols=209  Identities=16%  Similarity=0.242  Sum_probs=174.3

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~   79 (235)
                      ++++....+.+|.+.|++++|+|++++|++++.|+.|++||+++++....+..|...+  ++|+|+++.|++++.||.|+
T Consensus       127 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~  206 (420)
T 3vl1_A          127 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR  206 (420)
T ss_dssp             TSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             CCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            3456667788999999999999999999999999999999999999988888777655  99999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecC---C---------------------CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCcee
Q 026679           80 LFDSRSYDKGPFDTFLVGG---D---------------------TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR  135 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~---~---------------------~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  135 (235)
                      +||+++++.    ...+..   +                     ...+.+++|+|++++|++++.||.|++||+++++..
T Consensus       207 iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  282 (420)
T 3vl1_A          207 LWECGTGTT----IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT  282 (420)
T ss_dssp             EEETTTTEE----EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred             EeECCCCce----eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            999987653    222222   2                     245555667899999999999999999999998877


Q ss_pred             eeeccCCCCCcceeeEEeCCCc-EEEEeCCCCcEEEEEcCCCce-eeeecC-CCcceeEEEeecCCCEEEEcc--cceEE
Q 026679          136 CGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRNE-VACWNG-NIGVVACLKWAPRRAMFVAAS--SVLSF  210 (235)
Q Consensus       136 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~i~i  210 (235)
                      ..+. ..+...+.+++|+|+++ +|++|+.||.|++||+++++. +..+.. |...|.++.+ +++.+|++++  +.+++
T Consensus       283 ~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~i  360 (420)
T 3vl1_A          283 IQLP-SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKL  360 (420)
T ss_dssp             EEEC-CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEE
T ss_pred             EEcc-cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEE
Confidence            6654 34567899999999999 999999999999999998754 666766 5667888854 5788888887  78999


Q ss_pred             eeCCCC
Q 026679          211 WIPNPS  216 (235)
Q Consensus       211 w~~~~~  216 (235)
                      |++...
T Consensus       361 w~~~~~  366 (420)
T 3vl1_A          361 DIISDP  366 (420)
T ss_dssp             EEECCT
T ss_pred             EeccCC
Confidence            998763

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-35  Score=221.48  Aligned_cols=211  Identities=14%  Similarity=0.246  Sum_probs=176.9

Q ss_pred             hhhhhhhhcccccceeEEEeecC--CCeeEEEeccceEEEEecCcce--eeeeeeccCCce--EEEcCC--CCEEEEEec
Q 026679            3 DNRILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGRPT--VAFDQQ--GLVFAVAME   74 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~--~~~~~~--~~~l~~~~~   74 (235)
                      +++.+..+.+|...|++++|+++  +++|++++.||.|++||+.+++  ....+..+...+  ++|+|+  +.++++++.
T Consensus        44 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  123 (379)
T 3jrp_A           44 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS  123 (379)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC
Confidence            44566788899999999999987  8999999999999999999886  556666555444  999999  999999999


Q ss_pred             CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc-------------CCCeEEEecCCCcEEEEEcCCCcee--eeec
Q 026679           75 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-------------DGKSMLLTTTNNNIYVLDAYGGEKR--CGFS  139 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~  139 (235)
                      |+.|++||++.....  .......|...|.+++|+|             ++.++++++.|+.|++||++++...  ....
T Consensus       124 d~~i~v~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  201 (379)
T 3jrp_A          124 DGKVSVVEFKENGTT--SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  201 (379)
T ss_dssp             TSEEEEEECCTTSCC--CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             CCcEEEEecCCCCce--eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE
Confidence            999999999886432  2445668889999999999             6999999999999999999876532  2234


Q ss_pred             cCCCCCcceeeEEeCC---CcEEEEeCCCCcEEEEEcCCCc-----eeeeecCCCcceeEEEeecCCCEEEEcc--cceE
Q 026679          140 LEPSPNTNTEATFTPD---GQYVVSGSGDGTLHAWNINTRN-----EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLS  209 (235)
Q Consensus       140 ~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~  209 (235)
                      ...|...|.+++|+|+   +++|++++.||.|++||++++.     .+.....|...|.+++|+|++.+|++++  +.++
T Consensus       202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  281 (379)
T 3jrp_A          202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  281 (379)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEE
T ss_pred             EecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEE
Confidence            4566778999999999   8999999999999999998864     2233344788999999999999999887  7899


Q ss_pred             EeeCCC
Q 026679          210 FWIPNP  215 (235)
Q Consensus       210 iw~~~~  215 (235)
                      +|+++.
T Consensus       282 iw~~~~  287 (379)
T 3jrp_A          282 LWKENL  287 (379)
T ss_dssp             EEEEEE
T ss_pred             EEeCCC
Confidence            999873

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-34  Score=217.93  Aligned_cols=209  Identities=15%  Similarity=0.269  Sum_probs=176.1

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-------------------------
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-------------------------   56 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-------------------------   56 (235)
                      .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++....+....                         
T Consensus        62 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~  141 (369)
T 3zwl_B           62 LNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNP  141 (369)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred             CCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCC
Confidence            4567788899999999999999999999999999999999998876655543111                         


Q ss_pred             ------------------------------------CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCC
Q 026679           57 ------------------------------------RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT  100 (235)
Q Consensus        57 ------------------------------------~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  100 (235)
                                                          ...++|+|+++.+++++.||.|++||+++..   .....+..|.
T Consensus       142 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~  218 (369)
T 3zwl_B          142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY---EYVDSIDLHE  218 (369)
T ss_dssp             CEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT---EEEEEEECCS
T ss_pred             CEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc---EeEEEEecCC
Confidence                                                1125566667777777777777777776521   1245566788


Q ss_pred             cceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC--------------
Q 026679          101 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG--------------  166 (235)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------  166 (235)
                      ..|.+++|+|++++|++++.|+.|++||+++++....+.   +...+..++|+|+++++++++.++              
T Consensus       219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  295 (369)
T 3zwl_B          219 KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKF  295 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------C
T ss_pred             CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcc
Confidence            999999999999999999999999999999998887776   345699999999999999999888              


Q ss_pred             cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          167 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      .+++||..+++.+..+.+|...|.+++|+|++++|++++  +.+++|+++..
T Consensus       296 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          296 EARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             eeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            899999999999999999999999999999999999997  88999999764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.3e-35  Score=228.19  Aligned_cols=167  Identities=11%  Similarity=0.190  Sum_probs=137.6

Q ss_pred             hhhhcccccceeEEEeec-CCCeeEEEeccceEEEEecCcceeeeeeeccC----CceEEEcCCCCEEEEEecCCeEEEE
Q 026679            7 LRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRG----RPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      ...+.+|.+.|++++|+| ++++|++|+.||+|++||++++........+.    ..+++|+|++.+|++|+.||.|++|
T Consensus       157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w  236 (435)
T 4e54_B          157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL  236 (435)
T ss_dssp             EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred             EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence            345678999999999998 67899999999999999998765544443333    2348999999999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCC-eEEEecCCCcEEEEEcCCCceeeee-ccCCCCCcceeeEEeCCCcEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDGQYV  159 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l  159 (235)
                      |++...     ...+..|...|.+++|+|++. ++++++.|+.|++||+++.+....+ ....|...|++++|+|+|++|
T Consensus       237 d~~~~~-----~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l  311 (435)
T 4e54_B          237 NMDGKE-----LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARL  311 (435)
T ss_dssp             ESSSCB-----CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEE
T ss_pred             ccCcce-----eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCee
Confidence            987533     345668899999999999876 5778899999999999887655433 234567789999999999999


Q ss_pred             EEeCCCCcEEEEEcCCCce
Q 026679          160 VSGSGDGTLHAWNINTRNE  178 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~~~  178 (235)
                      ++++.||.|++||+++++.
T Consensus       312 ~s~~~D~~i~iwd~~~~~~  330 (435)
T 4e54_B          312 LTTDQKSEIRVYSASQWDC  330 (435)
T ss_dssp             EEEESSSCEEEEESSSSSS
T ss_pred             EEEcCCCEEEEEECCCCcc
Confidence            9999999999999876543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=224.45  Aligned_cols=202  Identities=13%  Similarity=0.172  Sum_probs=166.5

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcce-----------eeeeeeccC--------------CceEEEcCCC-
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-----------CQGILRLRG--------------RPTVAFDQQG-   66 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------~~~~~~~~~--------------~~~~~~~~~~-   66 (235)
                      |.+.|++++|+|++++|++|+.||.|++||+.+++           ....+..|.              +..++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            67899999999999999999999999999998776           466777776              4459999998 


Q ss_pred             -CEEEEEecCCeEEEEeccCCCCC----------------------Cc--------------eeEeecCCCcceeEEEEc
Q 026679           67 -LVFAVAMEAGAIKLFDSRSYDKG----------------------PF--------------DTFLVGGDTAEVCDIKFS  109 (235)
Q Consensus        67 -~~l~~~~~dg~v~i~d~~~~~~~----------------------~~--------------~~~~~~~~~~~v~~~~~~  109 (235)
                       ..|++++.|+.|++||+.+....                      ..              ......+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             89999999999999998763210                      00              001235789999999999


Q ss_pred             cCCCeEEEecCCCcEEEEEcCC-Cceeeee-----ccCCCCCcceeeEEeCCC-cEEEEeCCCCcEEEEEcCCCce----
Q 026679          110 NDGKSMLLTTTNNNIYVLDAYG-GEKRCGF-----SLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNE----  178 (235)
Q Consensus       110 ~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~-----~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~----  178 (235)
                      |++++|+++ .|+.|++||++. ++....+     ....|...|.+++|+|++ ++|++|+.||.|++||+++++.    
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  265 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH  265 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence            999999998 799999999984 3333322     244566789999999998 9999999999999999999886    


Q ss_pred             eeeecCCCc------------ceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679          179 VACWNGNIG------------VVACLKWAPRRAMFVAAS-SVLSFWIPNP  215 (235)
Q Consensus       179 ~~~~~~~~~------------~v~~~~~~~~~~~l~~~~-~~i~iw~~~~  215 (235)
                      +..+..|..            .|.+++|+|++++|++++ +.+++||++.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~  315 (447)
T 3dw8_B          266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNM  315 (447)
T ss_dssp             CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTC
T ss_pred             eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCC
Confidence            677887775            899999999999999988 8999999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.1e-34  Score=212.31  Aligned_cols=200  Identities=18%  Similarity=0.251  Sum_probs=175.0

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcce--eeeeeeccCCc--eEEEcCCCCEEEEEecCCeEEEEeccCCC
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYD   87 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v~i~d~~~~~   87 (235)
                      +|...|.+++|+|++++|++++.|+.|++||+++++  ....+..+...  .++|+|+++.+++++.||.|++||+++.+
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~  174 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            789999999999999999999999999999998876  45555555544  48999999999999999999999998765


Q ss_pred             CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT  167 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  167 (235)
                      .    ...+..|...+.+++|+|+++.|++++.|+.|++||+++++....+.   +...+.+++|+|++++|++++.++.
T Consensus       175 ~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~  247 (337)
T 1gxr_A          175 L----VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             E----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             e----eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec---CCCceEEEEECCCCCEEEEEcCCCc
Confidence            3    55667789999999999999999999999999999999998877664   3456999999999999999999999


Q ss_pred             EEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          168 LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      |++||+++++.. .+..|...|.+++|+|++++|++++  +.+++|+++.....
T Consensus       248 i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          248 VEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             EEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence            999999887754 5677999999999999999999997  78999999876543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-35  Score=239.19  Aligned_cols=208  Identities=14%  Similarity=0.301  Sum_probs=177.2

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC--cceeeeeeeccCCce--EEEcCC--CCEEEEEecCCeEEE
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR--VNACQGILRLRGRPT--VAFDQQ--GLVFAVAMEAGAIKL   80 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~~--~~~~~~--~~~l~~~~~dg~v~i   80 (235)
                      +..+++|.+.|++++|+|++++|++|+.||.|++||+.  ++.....+..|...+  ++|+|+  ++.|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            46789999999999999999999999999999999998  556777777776555  899887  999999999999999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccC--CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC----
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP----  154 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~----  154 (235)
                      ||+.++..  ........|...|.+++|+|+  ++.+++++.||.|++||++++..........+...|.+++|+|    
T Consensus        82 wd~~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~  159 (753)
T 3jro_A           82 WKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (753)
T ss_dssp             EEEETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred             EECCCCcc--cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence            99987541  125566789999999999999  9999999999999999999886555555566778899999999    


Q ss_pred             ---------CCcEEEEeCCCCcEEEEEcCCC----ceeeeecCCCcceeEEEeecC---CCEEEEcc--cceEEeeCCCC
Q 026679          155 ---------DGQYVVSGSGDGTLHAWNINTR----NEVACWNGNIGVVACLKWAPR---RAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       155 ---------~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--~~i~iw~~~~~  216 (235)
                               ++++|++|+.||.|++||++++    .....+.+|..+|.+++|+|+   +.++++++  +.+++|++...
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence                     5899999999999999999877    455677889999999999999   89999998  78999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.7e-35  Score=223.62  Aligned_cols=205  Identities=14%  Similarity=0.246  Sum_probs=174.5

Q ss_pred             hhhhccc-----ccceeEEEee----cCCCe-eEEEeccceEEEEecCc------ceeee-----eeec-------cC--
Q 026679            7 LRYFKGH-----KERVISLCMS----PVNDS-FMSGSLDHSVRIWDLRV------NACQG-----ILRL-------RG--   56 (235)
Q Consensus         7 ~~~~~~h-----~~~v~~~~~~----~~~~~-l~s~~~d~~i~vwd~~~------~~~~~-----~~~~-------~~--   56 (235)
                      +..+.+|     ...|.+++|+    |++++ |++++.||.|++||+.+      ++.+.     .+..       +.  
T Consensus       109 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (397)
T 1sq9_A          109 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF  188 (397)
T ss_dssp             EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC
T ss_pred             ceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC
Confidence            6677788     5999999999    99999 99999999999999988      66665     5532       33  


Q ss_pred             CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecC---C---CcceeEEEEccCCCeEEEecCC---CcEEEE
Q 026679           57 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG---D---TAEVCDIKFSNDGKSMLLTTTN---NNIYVL  127 (235)
Q Consensus        57 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---~~i~~~  127 (235)
                      ..+++|+|++ .+++++.||.|++||+++.+.    ...+..   |   ...+.+++|+|++++|++++.|   +.|++|
T Consensus       189 i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~  263 (397)
T 1sq9_A          189 ATSVDISERG-LIATGFNNGTVQISELSTLRP----LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY  263 (397)
T ss_dssp             CCEEEECTTS-EEEEECTTSEEEEEETTTTEE----EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred             ceEEEECCCc-eEEEEeCCCcEEEEECCCCce----eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence            4559999999 999999999999999987543    455556   7   8899999999999999999999   999999


Q ss_pred             EcCCCceeeeeccCC-----------CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec------CC-----
Q 026679          128 DAYGGEKRCGFSLEP-----------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN------GN-----  185 (235)
Q Consensus       128 d~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~------~~-----  185 (235)
                      |+++++.+..+....           +...|.+++|+|++++|++++.||.|++||+++++.+..+.      .|     
T Consensus       264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  343 (397)
T 1sq9_A          264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL  343 (397)
T ss_dssp             ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred             ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence            999998887766411           55779999999999999999999999999999999999998      77     


Q ss_pred             ----------CcceeEEEeecCC----------CEEEEcc--cceEEeeCCCC
Q 026679          186 ----------IGVVACLKWAPRR----------AMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       186 ----------~~~v~~~~~~~~~----------~~l~~~~--~~i~iw~~~~~  216 (235)
                                ...|.+++|+|++          .+|++++  +.|++|+++++
T Consensus       344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence                      8999999999998          7888887  88999998764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-35  Score=228.79  Aligned_cols=214  Identities=13%  Similarity=0.246  Sum_probs=172.2

Q ss_pred             hhhhhhhh-cccccceeEEEeec-CCCeeEEEeccceEEEEecCc---ce---eeeeeeccC--CceEEEcCCCCEEEEE
Q 026679            3 DNRILRYF-KGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRV---NA---CQGILRLRG--RPTVAFDQQGLVFAVA   72 (235)
Q Consensus         3 ~~~~~~~~-~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~---~~---~~~~~~~~~--~~~~~~~~~~~~l~~~   72 (235)
                      +++++..+ ++|.+.|++++|+| ++++|++|+.||+|++||+.+   +.   ....+. |.  +.+++|+|+++.|+++
T Consensus        51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~  129 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQITMIPNFDAFAVS  129 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEEEEEECTTSSEEEEE
T ss_pred             cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc-CCCCEEEEEEeCCCCEEEEE
Confidence            35667778 89999999999999 999999999999999999976   43   222222 33  3449999999999999


Q ss_pred             ecCCeEEEEecc---CCCCCC------ceeEeecC--CCcceeEEE--EccCCCeEEEecCCCcEEEEEcCCCceeeeec
Q 026679           73 MEAGAIKLFDSR---SYDKGP------FDTFLVGG--DTAEVCDIK--FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS  139 (235)
Q Consensus        73 ~~dg~v~i~d~~---~~~~~~------~~~~~~~~--~~~~v~~~~--~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  139 (235)
                      +.||.|++||+.   .++...      .....+..  +...+.++.  +++++.+|++++.|+.|++||+++++....+.
T Consensus       130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  209 (437)
T 3gre_A          130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE  209 (437)
T ss_dssp             ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence            999999999995   322100      00111111  445566666  55789999999999999999999999888887


Q ss_pred             cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-CCCcceeEEEee----cCCCEEEEcc--cceEEee
Q 026679          140 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWA----PRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~----~~~~~l~~~~--~~i~iw~  212 (235)
                      .+.|...|++++|+|++++|++|+.||.|++||+++++.+..+. .|..+|.+++|+    |++.+|++++  +.+++||
T Consensus       210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd  289 (437)
T 3gre_A          210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN  289 (437)
T ss_dssp             CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence            65466789999999999999999999999999999999988876 688899999665    4678999997  7799999


Q ss_pred             CCCCC
Q 026679          213 PNPSS  217 (235)
Q Consensus       213 ~~~~~  217 (235)
                      ++...
T Consensus       290 ~~~~~  294 (437)
T 3gre_A          290 FVKGH  294 (437)
T ss_dssp             TTTTE
T ss_pred             cCCCc
Confidence            97654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.4e-34  Score=213.47  Aligned_cols=199  Identities=15%  Similarity=0.189  Sum_probs=175.1

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      ....+.+|...|.+++|+|++++|++++.|+.|++||+++++....+..+...+  ++|+|+++.+++++.||.|++||+
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~  212 (337)
T 1gxr_A          133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL  212 (337)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence            455677899999999999999999999999999999999999888888766544  899999999999999999999999


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                      ++.+.     .....+...+.+++|+|+++.+++++.++.|++||+++++..   ....+...+.+++|+|++++|++++
T Consensus       213 ~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~  284 (337)
T 1gxr_A          213 REGRQ-----LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY---QLHLHESCVLSLKFAYCGKWFVSTG  284 (337)
T ss_dssp             TTTEE-----EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE---EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCce-----EeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE---EEcCCccceeEEEECCCCCEEEEec
Confidence            87653     222346788999999999999999999999999999987754   3445667899999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          164 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       164 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      .||.|++||+.+++.+... .|...+.+++|+|++++|++++  +.+++|++
T Consensus       285 ~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          285 KDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            9999999999999887554 4788999999999999999987  78999986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=219.09  Aligned_cols=197  Identities=15%  Similarity=0.232  Sum_probs=167.9

Q ss_pred             hhhhhhhcccccceeEEEeecC---CCeeEEEeccceEEEEecCc-ceee-eeeeccCCce--EEEcCCCCEEEEEecCC
Q 026679            4 NRILRYFKGHKERVISLCMSPV---NDSFMSGSLDHSVRIWDLRV-NACQ-GILRLRGRPT--VAFDQQGLVFAVAMEAG   76 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~vwd~~~-~~~~-~~~~~~~~~~--~~~~~~~~~l~~~~~dg   76 (235)
                      .+.++.+++|.+.|++++|+|+   |++|++|+.||.|++||+.+ +... ..+..|...+  ++|+|++++|++++.||
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK  108 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence            3456678899999999999999   59999999999999999987 4444 6666666544  99999999999999999


Q ss_pred             eEEEEeccCCCCCCceeEeecCCCcceeEEEE--ccCCCeEEEecCCCcEEEEEcCCCceeeeecc--------------
Q 026679           77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF--SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL--------------  140 (235)
Q Consensus        77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--------------  140 (235)
                      .|++||+++.+     ......|...|.+++|  +|++++|++++.|+.|++||+++++....+..              
T Consensus       109 ~v~iwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (368)
T 3mmy_A          109 TAKMWDLSSNQ-----AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA  183 (368)
T ss_dssp             EEEEEETTTTE-----EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEE
T ss_pred             cEEEEEcCCCC-----ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCee
Confidence            99999998765     3345678899999999  88999999999999999999987654322211              


Q ss_pred             --------------------------------------------------------------------------CCCCC-
Q 026679          141 --------------------------------------------------------------------------EPSPN-  145 (235)
Q Consensus       141 --------------------------------------------------------------------------~~~~~-  145 (235)
                                                                                                ..+.. 
T Consensus       184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  263 (368)
T 3mmy_A          184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN  263 (368)
T ss_dssp             EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred             EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence                                                                                      01111 


Q ss_pred             -----------cceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          146 -----------TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       146 -----------~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                                 .|.+++|+|++++|++++.||.|++||+++++.+..+..|..+|.+++|+|++.+|++++
T Consensus       264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s  334 (368)
T 3mmy_A          264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYAS  334 (368)
T ss_dssp             ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred             cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence                       589999999999999999999999999999999999999999999999999999999997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-34  Score=230.27  Aligned_cols=205  Identities=21%  Similarity=0.373  Sum_probs=177.2

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      +.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..+...+  ++|+|++++|++++.|+.|++||
T Consensus       335 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~  413 (577)
T 2ymu_A          335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  413 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            345567889999999999999999999999999999995 567777777776554  99999999999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      ... +    ....+..|...|.+++|+|++++|++++.|+.|++||. +++....+.  .|...|.+++|+|++++|+++
T Consensus       414 ~~~-~----~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~--~~~~~v~~~~~spd~~~las~  485 (577)
T 2ymu_A          414 RNG-Q----LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQTIASA  485 (577)
T ss_dssp             TTC-C----EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEE--CCSSCEEEEEECTTSCEEEEE
T ss_pred             CCC-C----EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEc--CCCCCEEEEEEcCCCCEEEEE
Confidence            542 2    24566789999999999999999999999999999996 455555444  455679999999999999999


Q ss_pred             CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          163 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       163 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      +.|+.|++||. +++.+..+.+|...|++++|+|++++|++++  +.|++||.+.....
T Consensus       486 ~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~  543 (577)
T 2ymu_A          486 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ  543 (577)
T ss_dssp             ETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEE
T ss_pred             eCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEE
Confidence            99999999995 7888999999999999999999999999997  78999997654433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.6e-34  Score=220.72  Aligned_cols=211  Identities=10%  Similarity=0.090  Sum_probs=178.6

Q ss_pred             hhhhhcccccceeEEEeecC----C---CeeEEEeccceEEEEecCccee-----eeeeeccC-----C--ceEEEc---
Q 026679            6 ILRYFKGHKERVISLCMSPV----N---DSFMSGSLDHSVRIWDLRVNAC-----QGILRLRG-----R--PTVAFD---   63 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~----~---~~l~s~~~d~~i~vwd~~~~~~-----~~~~~~~~-----~--~~~~~~---   63 (235)
                      ++..+.+|...|++++|+|+    +   ++|++++.|+.|++||+.+++.     ...+..+.     .  ..++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            67788899999999999999    9   9999999999999999998876     77776662     3  339999   


Q ss_pred             -CCCCE-EEEEecCCeEEEEeccC------CCCCCce---eEee-----cCCCcceeEEEEccCCCeEEEecCCCcEEEE
Q 026679           64 -QQGLV-FAVAMEAGAIKLFDSRS------YDKGPFD---TFLV-----GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL  127 (235)
Q Consensus        64 -~~~~~-l~~~~~dg~v~i~d~~~------~~~~~~~---~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  127 (235)
                       |+++. |++++.||.|++||+++      .......   .+..     ..|...+.+++|+|++ .+++++.|+.|++|
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS  212 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence             99999 99999999999999988      4432110   2211     4578899999999999 99999999999999


Q ss_pred             EcCCCceeeeecc-CCC---CCcceeeEEeCCCcEEEEeCCC---CcEEEEEcCCCceeeeecC-------------CCc
Q 026679          128 DAYGGEKRCGFSL-EPS---PNTNTEATFTPDGQYVVSGSGD---GTLHAWNINTRNEVACWNG-------------NIG  187 (235)
Q Consensus       128 d~~~~~~~~~~~~-~~~---~~~i~~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~-------------~~~  187 (235)
                      |+++++....+.. ..|   ...+.+++|+|++++|++++.|   |.|++||+++++.+..+..             |..
T Consensus       213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (397)
T 1sq9_A          213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS  292 (397)
T ss_dssp             ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred             ECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence            9999988877665 114   5679999999999999999999   9999999999999999988             999


Q ss_pred             ceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          188 VVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       188 ~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      .|.+++|+|++++|++++  +.+++|++...+
T Consensus       293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            999999999999999997  779999997654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-34  Score=219.09  Aligned_cols=206  Identities=11%  Similarity=0.164  Sum_probs=178.1

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee-----------------------------
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR-----------------------------   53 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-----------------------------   53 (235)
                      +++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+.                             
T Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (425)
T 1r5m_A          138 TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD  217 (425)
T ss_dssp             TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET
T ss_pred             CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC
Confidence            356677788999999999999999999999999999999998776544332                             


Q ss_pred             ---------------------------ccCCc--eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCccee
Q 026679           54 ---------------------------LRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC  104 (235)
Q Consensus        54 ---------------------------~~~~~--~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~  104 (235)
                                                 .+...  .++|+|++++|++++.|+.|++||+++.+.    ...+..|...+.
T Consensus       218 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~  293 (425)
T 1r5m_A          218 DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS----QNCFYGHSQSIV  293 (425)
T ss_dssp             TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC----SEEECCCSSCEE
T ss_pred             CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc----ceEecCCCccEE
Confidence                                       12222  388999999999999999999999988654    455567889999


Q ss_pred             EEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCc-------
Q 026679          105 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-------  177 (235)
Q Consensus       105 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-------  177 (235)
                      +++|+|++ .+++++.|+.|++||+++++....+..  +...+.+++|+|++++|++++.||.|++||+++++       
T Consensus       294 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~  370 (425)
T 1r5m_A          294 SASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV--DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY  370 (425)
T ss_dssp             EEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC--TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC------
T ss_pred             EEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc--CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeee
Confidence            99999999 999999999999999999988876664  44669999999999999999999999999999888       


Q ss_pred             -------------eeeeecCCCc--ceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          178 -------------EVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       178 -------------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                                   .+..+..|..  .|.+++|+|++++|++++  +.+++|++++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          371 GNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             --------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred             cccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence                         8888888876  999999999999999887  7899999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.6e-35  Score=218.73  Aligned_cols=209  Identities=21%  Similarity=0.331  Sum_probs=171.9

Q ss_pred             hhh-hhhhhcccccceeEEE------eecCCCeeEEEeccceEEEEecCcce-eeeeeeccCC----ce--EE----EcC
Q 026679            3 DNR-ILRYFKGHKERVISLC------MSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRGR----PT--VA----FDQ   64 (235)
Q Consensus         3 ~~~-~~~~~~~h~~~v~~~~------~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~----~~--~~----~~~   64 (235)
                      +++ .+..+.+|...|.+++      |+|++++|++++.|+.|++||+++++ ....+..+..    .+  ++    |+|
T Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (357)
T 3i2n_A           99 APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ  178 (357)
T ss_dssp             SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred             CCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence            344 6778889999999995      57889999999999999999999886 6666654432    22  55    679


Q ss_pred             CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc---CCCeEEEecCCCcEEEEEcCCCceeeeec--
Q 026679           65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN---DGKSMLLTTTNNNIYVLDAYGGEKRCGFS--  139 (235)
Q Consensus        65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--  139 (235)
                      +++++++++.||.|++||+++.+.     .....|...+.+++|+|   +++++++++.||.|++||+++++....+.  
T Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  253 (357)
T 3i2n_A          179 EERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV  253 (357)
T ss_dssp             CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE
T ss_pred             CCCEEEEEccCCeEEEEECccCce-----eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee
Confidence            999999999999999999987653     33456788999999999   99999999999999999998876554433  


Q ss_pred             -cCCCCCcceeeEEeCCCc-EEEEeCCCCcEEEEEcCCC-------------------ceeeeecCCCcceeEEEeecCC
Q 026679          140 -LEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTR-------------------NEVACWNGNIGVVACLKWAPRR  198 (235)
Q Consensus       140 -~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~  198 (235)
                       ...+...|.+++|+|+++ +|++++.||.|++||++++                   +.+..+.+|...|.+++|+|++
T Consensus       254 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  333 (357)
T 3i2n_A          254 SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK  333 (357)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS
T ss_pred             ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCC
Confidence             225667899999999998 8999999999999999754                   3566778899999999999999


Q ss_pred             CEEE-Ecc--cceEEeeCCCC
Q 026679          199 AMFV-AAS--SVLSFWIPNPS  216 (235)
Q Consensus       199 ~~l~-~~~--~~i~iw~~~~~  216 (235)
                      ++|+ +++  +.+++|++...
T Consensus       334 ~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          334 RGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             TTEEEEEETTSEEEEEEECC-
T ss_pred             CeEEEEecCCCcEEEEECCCc
Confidence            9998 666  78999999754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-33  Score=216.63  Aligned_cols=209  Identities=20%  Similarity=0.276  Sum_probs=175.1

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC-cceeeeeeeccCCce--EEEcCCCCEEEEEecCCeE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR-VNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v   78 (235)
                      ++++.++.+.+|...|.+++|+  ++.|++++.||.|++||++ .......+..+...+  ++|+|++.+|++++.||.|
T Consensus       164 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v  241 (401)
T 4aez_A          164 ESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV  241 (401)
T ss_dssp             TTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence            4567778889999999999995  5799999999999999998 456677777776554  9999999999999999999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEE-ec--CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      ++||+++...    ...+..|...|.+++|+|++..+++ ++  .|+.|++||+++++....+..   ...+.+++|+|+
T Consensus       242 ~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~s~~  314 (401)
T 4aez_A          242 QIWDARSSIP----KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA---GSQVTSLIWSPH  314 (401)
T ss_dssp             EEEETTCSSE----EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEECSS
T ss_pred             EEccCCCCCc----cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEEECCC
Confidence            9999987553    5667788999999999997765554 33  699999999999988877653   356999999999


Q ss_pred             CcEEEE--eCCCCcEEEEEcCCCceee--eecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          156 GQYVVS--GSGDGTLHAWNINTRNEVA--CWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       156 ~~~l~~--~~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      +++|++  |+.||.|++||+.+++...  .+.+|...|.+++|+|++.+|++++  +.+++|++...+..
T Consensus       315 ~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            999998  6689999999999865544  4678999999999999999999997  78999999876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.8e-34  Score=235.55  Aligned_cols=212  Identities=14%  Similarity=0.174  Sum_probs=189.2

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~   79 (235)
                      .+++.+..+.+|..+|++++|+|++++|++++.||.|++||+.+++.+..+..|...+  ++|+|++..|++++.||.|+
T Consensus        43 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  122 (814)
T 3mkq_A           43 ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK  122 (814)
T ss_dssp             TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence            4677788899999999999999999999999999999999999999999888777554  99999999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC--CC
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP--DG  156 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~~  156 (235)
                      +||+.+..   .....+..|...|.+++|+| +++.+++++.||.|++||+.+++....+..+ +...+..++|+|  ++
T Consensus       123 vw~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  198 (814)
T 3mkq_A          123 LWNWENNW---ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDK  198 (814)
T ss_dssp             EEEGGGTS---EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC-CTTCCCEEEECCSTTC
T ss_pred             EEECCCCc---eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC-CCCCEEEEEEEECCCC
Confidence            99998753   23456678899999999999 8899999999999999999888776655543 336689999999  99


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      ++|++++.||.|++||+++++.+..+.+|...|.+++|+|++.++++++  +.+++|++.+..
T Consensus       199 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          199 PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred             CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999999999999999999999999999999999999999999997  889999997654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-34  Score=220.67  Aligned_cols=209  Identities=15%  Similarity=0.221  Sum_probs=175.7

Q ss_pred             hhhhhhcccccceeEEEeecC-CCeeEEEeccceEEEEecCcce------eeeee---eccC--CceEEEcCC-CCEEEE
Q 026679            5 RILRYFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNA------CQGIL---RLRG--RPTVAFDQQ-GLVFAV   71 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~------~~~~~---~~~~--~~~~~~~~~-~~~l~~   71 (235)
                      +.+..+.+|...|++++|+|+ +++|++++.|+.|++||+.+++      ....+   ..+.  ...++|+|+ +.++++
T Consensus       104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  183 (416)
T 2pm9_A          104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS  183 (416)
T ss_dssp             CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred             cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE
Confidence            467788899999999999998 8999999999999999998876      33222   2333  445999998 789999


Q ss_pred             EecCCeEEEEeccCCCCCCceeEeecCC------CcceeEEEEccCC-CeEEEecCCC---cEEEEEcCCCc-eeeeecc
Q 026679           72 AMEAGAIKLFDSRSYDKGPFDTFLVGGD------TAEVCDIKFSNDG-KSMLLTTTNN---NIYVLDAYGGE-KRCGFSL  140 (235)
Q Consensus        72 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d~---~i~~~d~~~~~-~~~~~~~  140 (235)
                      ++.||.|++||+++.+.    ...+..+      ...+.+++|+|++ .++++++.|+   .|++||++++. ....+. 
T Consensus       184 ~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-  258 (416)
T 2pm9_A          184 AGSSNFASIWDLKAKKE----VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-  258 (416)
T ss_dssp             ESSSSCEEEEETTTTEE----EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-
T ss_pred             EcCCCCEEEEECCCCCc----ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-
Confidence            99999999999987653    3344443      7889999999997 5888999998   99999999863 443332 


Q ss_pred             CCCCCcceeeEEeC-CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCC-CEEEEcc--cceEEeeCCCC
Q 026679          141 EPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       141 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~iw~~~~~  216 (235)
                      ..|...|.+++|+| ++++|++++.||.|++||+++++.+..+..|...|.+++|+|++ .+|++++  +.+++|++...
T Consensus       259 ~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence            15667899999999 99999999999999999999999999999999999999999999 8999987  78999999765


Q ss_pred             CC
Q 026679          217 SN  218 (235)
Q Consensus       217 ~~  218 (235)
                      ..
T Consensus       339 ~~  340 (416)
T 2pm9_A          339 TN  340 (416)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.6e-33  Score=218.27  Aligned_cols=209  Identities=18%  Similarity=0.283  Sum_probs=180.3

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEc--CCCCEEEEEecCCe
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFD--QQGLVFAVAMEAGA   77 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~dg~   77 (235)
                      .+++.+..+.+|.+.|++++|+|++ .|++|+.||+|++||+++++....+..|...+  ++++  +++.++++++.||.
T Consensus       150 ~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~  228 (464)
T 3v7d_B          150 INKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  228 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred             CCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence            4677888899999999999999987 99999999999999999999999998777655  6776  57899999999999


Q ss_pred             EEEEeccCCCCCCc-------------------eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeee
Q 026679           78 IKLFDSRSYDKGPF-------------------DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF  138 (235)
Q Consensus        78 v~i~d~~~~~~~~~-------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  138 (235)
                      |++||+++......                   ......+|...+.++  +++++++++++.|+.|++||+++++.+..+
T Consensus       229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  306 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL  306 (464)
T ss_dssp             EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            99999987653221                   134556777778766  678899999999999999999999887766


Q ss_pred             ccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          139 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       139 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      .  .|...+.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+  +.++++++  +.+++||++..
T Consensus       307 ~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~  382 (464)
T 3v7d_B          307 S--GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY  382 (464)
T ss_dssp             C--CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred             c--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCC
Confidence            4  455779999999999999999999999999999999999999999999999997  47888887  88999999765


Q ss_pred             C
Q 026679          217 S  217 (235)
Q Consensus       217 ~  217 (235)
                      .
T Consensus       383 ~  383 (464)
T 3v7d_B          383 S  383 (464)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.7e-33  Score=214.30  Aligned_cols=200  Identities=16%  Similarity=0.162  Sum_probs=164.1

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCC-EEEEEecCCeEEEEeccCCCC
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGL-VFAVAMEAGAIKLFDSRSYDK   88 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~   88 (235)
                      +|...|.+++|+|++++|++++.|+.|++||+ +++.+..+..+...+  ++|+|+++ ++++++.|+.|++||+++.+.
T Consensus       161 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  239 (383)
T 3ei3_B          161 SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD  239 (383)
T ss_dssp             CSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS
T ss_pred             CCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc
Confidence            34588999999999999999999999999999 577777787776554  99999998 999999999999999998554


Q ss_pred             CCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCC-----CCC----------cceeeEE
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP-----SPN----------TNTEATF  152 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~~----------~i~~~~~  152 (235)
                      ........ .|...|.+++|+| ++++|++++.|+.|++||+++++....+..+.     +..          .+..++|
T Consensus       240 ~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  318 (383)
T 3ei3_B          240 KNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR  318 (383)
T ss_dssp             TTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred             ccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEe
Confidence            33333333 6889999999999 99999999999999999999887765554332     112          2333556


Q ss_pred             eCCCcEEEEeCCCCcEEEEEcCCCceeeeecC--CCcceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679          153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNG--NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP  215 (235)
Q Consensus       153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~  215 (235)
                      +|++++  +++.|+.|++||+.+++.+..+.+  |...+..++|+|++++|++++ +.|++|++++
T Consensus       319 s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~  382 (383)
T 3ei3_B          319 YPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED  382 (383)
T ss_dssp             BCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred             cCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence            666665  778999999999999999999886  456788889999999999998 7899999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.4e-33  Score=212.67  Aligned_cols=209  Identities=13%  Similarity=0.110  Sum_probs=157.4

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEE-EEEecCCeEEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVF-AVAMEAGAIKL   80 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~v~i   80 (235)
                      .+++.+..+++|...|++++|+|+|++|++|+.|+ +++||+++++.......+....+++.++++.+ ++++.|+.|++
T Consensus         7 ~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i   85 (355)
T 3vu4_A            7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHI   85 (355)
T ss_dssp             ------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred             cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEE
Confidence            45566777899999999999999999999998775 78999988877766666666778999988877 56777899999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCC-----------------------------------CeEEE--ecCCCc
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-----------------------------------KSMLL--TTTNNN  123 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~l~~--~~~d~~  123 (235)
                      ||..+++.    ...+ .+...|.+++++++.                                   ..+++  ++.+|.
T Consensus        86 Wd~~~~~~----~~~~-~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~  160 (355)
T 3vu4_A           86 WDDVKKQD----VSRI-KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQ  160 (355)
T ss_dssp             EETTTTEE----EEEE-ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTC
T ss_pred             EECCCCcE----EEEE-ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcE
Confidence            99987653    2222 244567777776542                                   23444  577889


Q ss_pred             EEEEEcCCCcee--------------eeeccCCCCCcceeeEEeCCCcEEEEeCCCCc-EEEEEcCCCceeeeec-C-CC
Q 026679          124 IYVLDAYGGEKR--------------CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-LHAWNINTRNEVACWN-G-NI  186 (235)
Q Consensus       124 i~~~d~~~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~-~-~~  186 (235)
                      |++||+++++..              ....+..|...|.+++|+|+|++|++|+.|++ |++||+++++.+..+. + |.
T Consensus       161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~  240 (355)
T 3vu4_A          161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR  240 (355)
T ss_dssp             EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred             EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            999998875410              02234567788999999999999999999998 9999999999999998 5 99


Q ss_pred             cceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          187 GVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       187 ~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      ..|.+++|+|++++|++++  +.+++|+++..
T Consensus       241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             SCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             CcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            9999999999999999998  78999999764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.6e-34  Score=216.96  Aligned_cols=209  Identities=10%  Similarity=0.160  Sum_probs=176.6

Q ss_pred             hhhhhhhhcc-----cccceeEEEeecC----CCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC-CCCEEE
Q 026679            3 DNRILRYFKG-----HKERVISLCMSPV----NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ-QGLVFA   70 (235)
Q Consensus         3 ~~~~~~~~~~-----h~~~v~~~~~~~~----~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~   70 (235)
                      +++.++.++.     |...|++++|+|+    +++|++|+.||.|++||+.+++.+..+..+...+  ++|+| ++.+|+
T Consensus        53 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  132 (366)
T 3k26_A           53 SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL  132 (366)
T ss_dssp             GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEE
T ss_pred             CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEE
Confidence            3444455544     5578999999998    6689999999999999999999999888777555  99999 999999


Q ss_pred             EEecCCeEEEEeccCCCCCCceeEee---cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc-------
Q 026679           71 VAMEAGAIKLFDSRSYDKGPFDTFLV---GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-------  140 (235)
Q Consensus        71 ~~~~dg~v~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-------  140 (235)
                      +++.||.|++||+++.+.    ...+   ..|...|.+++|+|++++|++++.|+.|++||+++++....+..       
T Consensus       133 s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  208 (366)
T 3k26_A          133 SVSKDHALRLWNIQTDTL----VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPN  208 (366)
T ss_dssp             EEETTSCEEEEETTTTEE----EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGG
T ss_pred             EEeCCCeEEEEEeecCeE----EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCC
Confidence            999999999999987653    3344   57899999999999999999999999999999988765433221       


Q ss_pred             -------------------CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCce--------------eeeecCCCc
Q 026679          141 -------------------EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE--------------VACWNGNIG  187 (235)
Q Consensus       141 -------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--------------~~~~~~~~~  187 (235)
                                         ..+...|.+++|+  +++|++++.|+.|++||+++++.              +..+..|..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (366)
T 3k26_A          209 KTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC  286 (366)
T ss_dssp             GCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC
T ss_pred             CCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC
Confidence                               1256779999998  77999999999999999987654              677788999


Q ss_pred             ceeEEEeecC--CCEEEEcc--cceEEeeCCCCC
Q 026679          188 VVACLKWAPR--RAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       188 ~v~~~~~~~~--~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      .|.+++|+|+  +.+|++++  +.|++|+++...
T Consensus       287 ~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          287 DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             CSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred             cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence            9999999999  99999998  889999998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.1e-34  Score=235.43  Aligned_cols=207  Identities=15%  Similarity=0.217  Sum_probs=183.1

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      +..+.+++|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..+...+  ++|+|++++|++++.||.|++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            3556789999999999999999999999999999999999999999998877654  99999999999999999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC-ceeeeeccCCCCCcceeeEEeC-CCcEEE
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTP-DGQYVV  160 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~  160 (235)
                      +.+++.    ...+..|...|.+++|+|++++|++++.||.|++||+.++ .....+.  .|...+.+++|+| +++.|+
T Consensus        84 ~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~  157 (814)
T 3mkq_A           84 YNTGEK----VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFVMCVAFNPKDPSTFA  157 (814)
T ss_dssp             TTTCCE----EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE--CCSSCEEEEEEETTEEEEEE
T ss_pred             CCCCcE----EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc--CCCCcEEEEEEEcCCCCEEE
Confidence            988764    5666789999999999999999999999999999999887 4444443  4556799999999 899999


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecCCC-cceeEEEeec--CCCEEEEcc--cceEEeeCCCCC
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNGNI-GVVACLKWAP--RRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +++.||.|++||+.+++....+..+. ..+.+++|+|  ++.++++++  +.+++|++....
T Consensus       158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  219 (814)
T 3mkq_A          158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS  219 (814)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred             EEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            99999999999999888877776554 8899999999  999999997  789999987654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.6e-33  Score=208.92  Aligned_cols=205  Identities=15%  Similarity=0.243  Sum_probs=159.3

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc--------------------------
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--------------------------   58 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------------------------   58 (235)
                      .+.+.+++|...|.+++|+|++++|++++.|+.|++|+............+...                          
T Consensus        77 ~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d  156 (340)
T 4aow_A           77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN  156 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence            345678899999999999999999999999999999998765443333222111                          


Q ss_pred             -------------------eEEEcCC--CCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEE
Q 026679           59 -------------------TVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL  117 (235)
Q Consensus        59 -------------------~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  117 (235)
                                         .++|+++  ..++++++.|+.|++||+++.+.    ...+.+|...|.+++|+|++++|++
T Consensus       157 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s  232 (340)
T 4aow_A          157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL----KTNHIGHTGYLNTVTVSPDGSLCAS  232 (340)
T ss_dssp             TTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             eCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce----eeEecCCCCcEEEEEECCCCCEEEE
Confidence                               1444443  24556666666666666665442    4556678899999999999999999


Q ss_pred             ecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee---------cCCCcc
Q 026679          118 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW---------NGNIGV  188 (235)
Q Consensus       118 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---------~~~~~~  188 (235)
                      ++.|+.|++||+++.+.+..+..+   ..+.++.|+|++.++ +++.|+.|++||++++..+..+         .+|...
T Consensus       233 ~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~  308 (340)
T 4aow_A          233 GGKDGQAMLWDLNEGKHLYTLDGG---DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ  308 (340)
T ss_dssp             EETTCEEEEEETTTTEEEEEEECS---SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred             EeCCCeEEEEEeccCceeeeecCC---ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence            999999999999999888766543   458999999988665 5557999999999887766554         357889


Q ss_pred             eeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          189 VACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       189 v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      |++++|+|++++|++++  +.|+||++++++
T Consensus       309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          309 CTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            99999999999999998  889999998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.2e-33  Score=214.10  Aligned_cols=208  Identities=18%  Similarity=0.242  Sum_probs=176.5

Q ss_pred             hhhhhhhhcc-cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679            3 DNRILRYFKG-HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         3 ~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      +++....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+..+...+.++..+++.+++++.||.|++|
T Consensus       122 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~  201 (401)
T 4aez_A          122 SGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHH  201 (401)
T ss_dssp             TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred             CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEE
Confidence            4555555555 889999999999999999999999999999999999999988877764444477899999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC-cEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG-QYVV  160 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~  160 (235)
                      |++....   ....+..|...|.+++|+|++++|++++.|+.|++||+++++....+.  .+...|.+++|+|++ .+++
T Consensus       202 d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~ll~  276 (401)
T 4aez_A          202 DVRIANH---QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT--NHNAAVKAVAWCPWQSNLLA  276 (401)
T ss_dssp             ETTSSSC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC--CCSSCCCEEEECTTSTTEEE
T ss_pred             ecccCcc---eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec--CCcceEEEEEECCCCCCEEE
Confidence            9985432   355667899999999999999999999999999999999988776554  455779999999976 4556


Q ss_pred             EeC--CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEE--cc--cceEEeeCCCC
Q 026679          161 SGS--GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA--AS--SVLSFWIPNPS  216 (235)
Q Consensus       161 ~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~~i~iw~~~~~  216 (235)
                      +++  .|+.|++||+++++.+..+. +...|.+++|+|++.++++  |+  +.+++|++...
T Consensus       277 ~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          277 TGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             EECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence            654  79999999999999988886 6678999999999999998  43  78999999764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=8.4e-34  Score=219.15  Aligned_cols=213  Identities=17%  Similarity=0.341  Sum_probs=173.4

Q ss_pred             hhhhhhhcccccceeEEEeecCCC-eeEEEeccceEEEEecCccee-------eeeeeccCCc--eEEEcC-CCCEEEEE
Q 026679            4 NRILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNAC-------QGILRLRGRP--TVAFDQ-QGLVFAVA   72 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~-------~~~~~~~~~~--~~~~~~-~~~~l~~~   72 (235)
                      .+.+..+.+|...|++++|+|++. +|++|+.||.|++||+..+..       ...+..|...  .++|+| ++.+|+++
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~  250 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV  250 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence            456677889999999999999987 999999999999999987322       3344455543  499999 77899999


Q ss_pred             ecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCC-eEEEecCCCcEEEEEcCC-CceeeeeccCCCCCcceee
Q 026679           73 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEA  150 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~i~~~  150 (235)
                      +.||.|++||+++.... .....+..|...|++++|+|++. .+++++.||.|++||++. .+.+..+.  .|...|.++
T Consensus       251 ~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~--~h~~~v~~i  327 (430)
T 2xyi_A          251 ADDQKLMIWDTRNNNTS-KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQV  327 (430)
T ss_dssp             ETTSEEEEEETTCSCSS-SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE--CCSSCEEEE
T ss_pred             eCCCeEEEEECCCCCCC-cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee--cCCCCEEEE
Confidence            99999999999976421 12344557889999999999987 588999999999999998 44455444  455779999


Q ss_pred             EEeCCCc-EEEEeCCCCcEEEEEcCC--------------CceeeeecCCCcceeEEEeecCCC-EEEEcc--cceEEee
Q 026679          151 TFTPDGQ-YVVSGSGDGTLHAWNINT--------------RNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWI  212 (235)
Q Consensus       151 ~~~~~~~-~l~~~~~dg~i~v~d~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~~i~iw~  212 (235)
                      +|+|+++ +|++++.|+.|++||+..              .+.+..+.+|...|.+++|+|++. ++++++  +.|++|+
T Consensus       328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence            9999985 689999999999999986              356677788999999999999999 777776  7899999


Q ss_pred             CCCCCCC
Q 026679          213 PNPSSNS  219 (235)
Q Consensus       213 ~~~~~~~  219 (235)
                      +......
T Consensus       408 ~~~~~~~  414 (430)
T 2xyi_A          408 MAENVYN  414 (430)
T ss_dssp             ECHHHHC
T ss_pred             ccccccc
Confidence            9765433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8.8e-33  Score=211.46  Aligned_cols=205  Identities=15%  Similarity=0.278  Sum_probs=169.5

Q ss_pred             cccccceeEEEeec-CCCeeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcC---CCCEEEEEecCCeEEEEeccC
Q 026679           11 KGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQ---QGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus        11 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~---~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      .+|...|.+++|+| ++.+|++++.|+.|++||+.+++....+..... ..+.++|   ++.++++++.+|.|++||+++
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            46999999999999 678999999999999999999988888775443 3478887   455999999999999999988


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCe-EEEecCCCcEEEEEcCCCce-eeeec-------------cCCCCCcceee
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGGEK-RCGFS-------------LEPSPNTNTEA  150 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~-~~~~~-------------~~~~~~~i~~~  150 (235)
                      .+.    ...+..|...|.+++|+|++++ +++++.||.|++||++++.. ...+.             ...+...|.++
T Consensus       176 ~~~----~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          176 GSC----SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             SCC----CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             cce----eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            764    5566789999999999999985 88999999999999987652 22211             13466789999


Q ss_pred             EEeCCCcEEEEeCCCCcEEEEEcCCCc-----------------------------------------------eeeeec
Q 026679          151 TFTPDGQYVVSGSGDGTLHAWNINTRN-----------------------------------------------EVACWN  183 (235)
Q Consensus       151 ~~~~~~~~l~~~~~dg~i~v~d~~~~~-----------------------------------------------~~~~~~  183 (235)
                      +|+|++++|++++.||.|++||+++++                                               .+..+.
T Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  331 (408)
T 4a11_B          252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK  331 (408)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence            999999999999999999999987643                                               344556


Q ss_pred             CCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          184 GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       184 ~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      +|...|.+++|+|++.+|++++  +.+++|+++..+..
T Consensus       332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred             cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence            7889999999999999999997  78999999876543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.7e-34  Score=219.36  Aligned_cols=209  Identities=15%  Similarity=0.258  Sum_probs=173.4

Q ss_pred             hhhhhhcccccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeee--eccCCc--eEEEcCCCCEEEEEecCCeEE
Q 026679            5 RILRYFKGHKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGIL--RLRGRP--TVAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~--~~~~~~~~~~l~~~~~dg~v~   79 (235)
                      +.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++....+  ..+...  .++|+|++++|++++.||.|+
T Consensus       122 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  201 (402)
T 2aq5_A          122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR  201 (402)
T ss_dssp             SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEE
Confidence            5577888999999999999998 69999999999999999999998888  555544  499999999999999999999


Q ss_pred             EEeccCCCCCCceeEee-cCCCcc-eeEEEEccCCCeEEEe---cCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC
Q 026679           80 LFDSRSYDKGPFDTFLV-GGDTAE-VCDIKFSNDGKSMLLT---TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP  154 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~  154 (235)
                      +||+++++.    ...+ ..|... +.++.|+|++++|+++   +.|+.|++||+++++.........+...+.+++|+|
T Consensus       202 iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  277 (402)
T 2aq5_A          202 VIEPRKGTV----VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP  277 (402)
T ss_dssp             EEETTTTEE----EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET
T ss_pred             EEeCCCCce----eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC
Confidence            999987653    3344 566655 8999999999999998   789999999999876522222223446799999999


Q ss_pred             CCcEEE-EeCCCCcEEEEEcCCCce-eeeecC--CCcceeEEEeecCCCEEEEcccceEEeeCCCCC
Q 026679          155 DGQYVV-SGSGDGTLHAWNINTRNE-VACWNG--NIGVVACLKWAPRRAMFVAASSVLSFWIPNPSS  217 (235)
Q Consensus       155 ~~~~l~-~~~~dg~i~v~d~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~  217 (235)
                      ++++|+ +++.||.|++||+.+++. +..+..  |..+|.+++|+|++.+++++++.+++|++....
T Consensus       278 ~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          278 DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERK  344 (402)
T ss_dssp             TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEETTE
T ss_pred             CCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCCCc
Confidence            999986 566799999999998874 444433  558999999999999998888999999987653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-33  Score=232.81  Aligned_cols=200  Identities=14%  Similarity=0.116  Sum_probs=168.5

Q ss_pred             cccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc-CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      .+|...|++++|+|++++||+|+.||+|++|+....+....+... .+..++|+| +++|++++.|+.|++||+++++. 
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~-   91 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV-   91 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE-
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE-
Confidence            489999999999999999999999999999999877665554322 234499999 88999999999999999987653 


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee---------eccCCCCCcceeeEEeCC-CcEE
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG---------FSLEPSPNTNTEATFTPD-GQYV  159 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---------~~~~~~~~~i~~~~~~~~-~~~l  159 (235)
                         ...+ .|...|++++|+|++++|++++.||.|++||+++++....         .....|...|.+++|+|+ +..|
T Consensus        92 ---~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l  167 (902)
T 2oaj_A           92 ---LTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV  167 (902)
T ss_dssp             ---EEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred             ---EEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence               2333 2667899999999999999999999999999998875311         223557788999999996 5789


Q ss_pred             EEeCCCCcEEEEEcCCCceeeeecCC------------------CcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          160 VSGSGDGTLHAWNINTRNEVACWNGN------------------IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      ++|+.||.| +||+++++.+..+..|                  ...|.+++|+|+|.+|++++  +.+++||++.++
T Consensus       168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred             EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            999999999 9999999888777655                  46799999999999999998  789999997654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8.6e-33  Score=211.50  Aligned_cols=209  Identities=14%  Similarity=0.182  Sum_probs=172.4

Q ss_pred             hhhhhhhhcccccceeEEEeec-CCCeeEEEeccceEEEEecCcceeeeeee-------------ccCC--ceEEEcC-C
Q 026679            3 DNRILRYFKGHKERVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILR-------------LRGR--PTVAFDQ-Q   65 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------------~~~~--~~~~~~~-~   65 (235)
                      .++....+++|.+.|++++|+| ++++|++|+.||.|++||+.++.....+.             .+..  ..++|+| +
T Consensus        32 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  111 (408)
T 4a11_B           32 LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD  111 (408)
T ss_dssp             ECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred             cCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence            3455667789999999999999 99999999999999999999876655543             2333  3499999 7


Q ss_pred             CCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC---CCeEEEecCCCcEEEEEcCCCceeeeeccCC
Q 026679           66 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP  142 (235)
Q Consensus        66 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  142 (235)
                      +.+|++++.||.|++||+.+.+.     .....+...+.++.++|.   +.++++++.++.|++||+++++....+.  .
T Consensus       112 ~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~  184 (408)
T 4a11_B          112 TGMFTSSSFDKTLKVWDTNTLQT-----ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ--G  184 (408)
T ss_dssp             TTCEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC--C
T ss_pred             CcEEEEEeCCCeEEEeeCCCCcc-----ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec--C
Confidence            78999999999999999987653     222236678999999984   4489999999999999999988776654  4


Q ss_pred             CCCcceeeEEeCCCc-EEEEeCCCCcEEEEEcCCCc-eeeee---------------cCCCcceeEEEeecCCCEEEEcc
Q 026679          143 SPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRN-EVACW---------------NGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       143 ~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      |...|.+++|+|+++ +|++++.||.|++||++++. .+..+               ..|...|.+++|+|++.+|++++
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence            556799999999998 58899999999999998765 23332               56888999999999999999997


Q ss_pred             --cceEEeeCCCCCC
Q 026679          206 --SVLSFWIPNPSSN  218 (235)
Q Consensus       206 --~~i~iw~~~~~~~  218 (235)
                        +.+++|++.....
T Consensus       265 ~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          265 TDNRMRLWNSSNGEN  279 (408)
T ss_dssp             TTSCEEEEETTTCCB
T ss_pred             CCCeEEEEECCCCcc
Confidence              7899999987654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-33  Score=215.53  Aligned_cols=206  Identities=14%  Similarity=0.243  Sum_probs=174.8

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCc----ceeeeeeeccCC--ceEEEcCC-CCEEEEEecCCeEEEEecc
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV----NACQGILRLRGR--PTVAFDQQ-GLVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~~dg~v~i~d~~   84 (235)
                      .|...|++++|+|++++|++++.||.|++||+.+    .+....+..|..  ..++|+|+ +++|++++.||.|++||+.
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            5889999999999999999999999999999987    346666766654  44999998 8999999999999999998


Q ss_pred             CCCCC-----CceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCC----CCCcceeeEEeC
Q 026679           85 SYDKG-----PFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP----SPNTNTEATFTP  154 (235)
Q Consensus        85 ~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~i~~~~~~~  154 (235)
                      +.+..     .........|...|.+++|+|+ +..|++++.|+.|++||+++++....+..+.    +...+.+++|+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (416)
T 2pm9_A          145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP  224 (416)
T ss_dssp             TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred             CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence            86511     1112233568889999999998 7889999999999999999998887776542    157799999999


Q ss_pred             CC-cEEEEeCCCC---cEEEEEcCCC-ceeeeec-CCCcceeEEEeec-CCCEEEEcc--cceEEeeCCCCC
Q 026679          155 DG-QYVVSGSGDG---TLHAWNINTR-NEVACWN-GNIGVVACLKWAP-RRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       155 ~~-~~l~~~~~dg---~i~v~d~~~~-~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      ++ .+|++++.|+   .|++||++++ +.+..+. +|...|.+++|+| ++.+|++++  +.+++|+++..+
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~  296 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE  296 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC
T ss_pred             CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc
Confidence            97 6899999998   9999999986 6677777 8999999999999 899999997  789999997654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-33  Score=211.75  Aligned_cols=194  Identities=10%  Similarity=0.026  Sum_probs=161.6

Q ss_pred             EeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCC------CCCCceeE
Q 026679           21 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSY------DKGPFDTF   94 (235)
Q Consensus        21 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~------~~~~~~~~   94 (235)
                      .+.+++.+|++|+.||+|++||+.+++.+..+.......+.++|+   +++++.|+.+++|+....      ........
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~  119 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLRE  119 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence            445678899999999999999999999888887666666888888   999999999999987631      11111222


Q ss_pred             eecCCCcceeEEEEcc--CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679           95 LVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN  172 (235)
Q Consensus        95 ~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  172 (235)
                      ....|...|.+++|+|  +++++++++.|+.|++||+++++....... .+...+.+++|+|++++|++|+.||.|++||
T Consensus       120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd  198 (343)
T 3lrv_A          120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA-KSDVEYSSGVLHKDSLLLALYSPDGILDVYN  198 (343)
T ss_dssp             EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC-CSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred             eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec-CCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            3345668899999999  999999999999999999999888654433 3445699999999999999999999999999


Q ss_pred             cCCCcee-eeecC-CCcceeEEEeecCCCEEEEcc-cceEEeeCCCCCC
Q 026679          173 INTRNEV-ACWNG-NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSN  218 (235)
Q Consensus       173 ~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~  218 (235)
                      +++++.+ ..+.. |..+|.+++|+|++.+|++++ +.+++||++....
T Consensus       199 ~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~  247 (343)
T 3lrv_A          199 LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVG  247 (343)
T ss_dssp             SSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTT
T ss_pred             CCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCc
Confidence            9999887 77887 999999999999999999998 7899999987644

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=219.30  Aligned_cols=211  Identities=13%  Similarity=0.273  Sum_probs=168.8

Q ss_pred             hhhhhcccc------------cceeEEEeecCC--CeeEEEeccceEEEEecCcceee----------------------
Q 026679            6 ILRYFKGHK------------ERVISLCMSPVN--DSFMSGSLDHSVRIWDLRVNACQ----------------------   49 (235)
Q Consensus         6 ~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~----------------------   49 (235)
                      ++..+++|.            +.|++++|+|++  ..|++++.|++|++||+.++...                      
T Consensus        73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  152 (447)
T 3dw8_B           73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL  152 (447)
T ss_dssp             EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred             EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence            466788998            889999999998  78999999999999999765432                      


Q ss_pred             -----------------ee-eeccC--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE-----eecCCCccee
Q 026679           50 -----------------GI-LRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF-----LVGGDTAEVC  104 (235)
Q Consensus        50 -----------------~~-~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-----~~~~~~~~v~  104 (235)
                                       .. ...|.  +..++|+|++++|++| .|+.|++||++.... .....     .+..|...|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~  230 (447)
T 3dw8_B          153 RVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVIT  230 (447)
T ss_dssp             CCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEE
T ss_pred             EeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceE
Confidence                             11 12343  3459999999999998 899999999984321 00011     2557889999


Q ss_pred             EEEEccCC-CeEEEecCCCcEEEEEcCCCce----eeeeccCCC----------CCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679          105 DIKFSNDG-KSMLLTTTNNNIYVLDAYGGEK----RCGFSLEPS----------PNTNTEATFTPDGQYVVSGSGDGTLH  169 (235)
Q Consensus       105 ~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~  169 (235)
                      +++|+|++ +.|++++.|+.|++||+++++.    ...+..+..          ...|.+++|+|++++|++++. +.|+
T Consensus       231 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~  309 (447)
T 3dw8_B          231 AAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVK  309 (447)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEE
T ss_pred             EEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEE
Confidence            99999998 9999999999999999998876    444443321          027999999999999999998 9999


Q ss_pred             EEEcCC-CceeeeecCCCcc---------------eeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          170 AWNINT-RNEVACWNGNIGV---------------VACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       170 v~d~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      +||+++ ++.+..+.+|...               +..++|+|++.+|++++  +.|++||+++.+..
T Consensus       310 iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          310 VWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             EEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             EEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence            999997 8888888888542               23499999999999998  78999999876543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=230.31  Aligned_cols=212  Identities=14%  Similarity=0.246  Sum_probs=178.3

Q ss_pred             hhhhhhhhcccccceeEEEeecC--CCeeEEEeccceEEEEecCcce--eeeeeeccCCce--EEEcCC--CCEEEEEec
Q 026679            3 DNRILRYFKGHKERVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGRPT--VAFDQQ--GLVFAVAME   74 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~--~~~~~~--~~~l~~~~~   74 (235)
                      +++.+..+.+|.++|++++|+|+  +++|++|+.||.|++||+.+++  ....+..+...+  ++|+|+  +..+++++.
T Consensus        42 ~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  121 (753)
T 3jro_A           42 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS  121 (753)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC
Confidence            34567788899999999999988  8999999999999999999886  556666565444  999999  999999999


Q ss_pred             CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc-------------CCCeEEEecCCCcEEEEEcCCCcee--eeec
Q 026679           75 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-------------DGKSMLLTTTNNNIYVLDAYGGEKR--CGFS  139 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~  139 (235)
                      ||.|++||+++.....  ......|...|.+++|+|             ++..+++++.||.|++||++++...  ....
T Consensus       122 dg~I~vwdl~~~~~~~--~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~  199 (753)
T 3jro_A          122 DGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  199 (753)
T ss_dssp             TSEEEEEECCSSSCCC--CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             CCcEEEEEeecCCCcc--eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence            9999999998864322  345567889999999999             5899999999999999999877432  2233


Q ss_pred             cCCCCCcceeeEEeCC---CcEEEEeCCCCcEEEEEcCCCc-----eeeeecCCCcceeEEEeecCCCEEEEcc--cceE
Q 026679          140 LEPSPNTNTEATFTPD---GQYVVSGSGDGTLHAWNINTRN-----EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLS  209 (235)
Q Consensus       140 ~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~  209 (235)
                      ...|...|.+++|+|+   +++|++++.||.|++||+++++     .......|...|++++|+|++.++++++  |.++
T Consensus       200 ~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~  279 (753)
T 3jro_A          200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  279 (753)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEE
T ss_pred             ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEE
Confidence            4566788999999999   9999999999999999998864     3344456888999999999999999987  7899


Q ss_pred             EeeCCCC
Q 026679          210 FWIPNPS  216 (235)
Q Consensus       210 iw~~~~~  216 (235)
                      +|+++..
T Consensus       280 vwd~~~~  286 (753)
T 3jro_A          280 LWKENLE  286 (753)
T ss_dssp             CCBCCSS
T ss_pred             EEecCCC
Confidence            9999753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.2e-33  Score=215.85  Aligned_cols=209  Identities=14%  Similarity=0.115  Sum_probs=155.6

Q ss_pred             hhhhhcccccceeEEEeec--------CCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCC-CEEEEEec
Q 026679            6 ILRYFKGHKERVISLCMSP--------VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQG-LVFAVAME   74 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~--------~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~-~~l~~~~~   74 (235)
                      .+..+++|.+.|++++|+|        ++++||+++.|++|+|||+.++.....+..+...+  ++|+|++ .+|++++.
T Consensus       128 ~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  207 (393)
T 4gq1_A          128 VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER  207 (393)
T ss_dssp             EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET
T ss_pred             eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC
Confidence            3456889999999999998        78899999999999999998887776666655444  9999987 47999999


Q ss_pred             CCeEEEEeccCCCCCCce---------------------eEeecCCCcceeEEEEc-cCCCeEEEecCCCcEEEEEcCCC
Q 026679           75 AGAIKLFDSRSYDKGPFD---------------------TFLVGGDTAEVCDIKFS-NDGKSMLLTTTNNNIYVLDAYGG  132 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~~---------------------~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~  132 (235)
                      |+.|++||+++.+.....                     .....+|...+.++.|+ |+++.+++++.|+.+++||+..+
T Consensus       208 d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~  287 (393)
T 4gq1_A          208 NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN  287 (393)
T ss_dssp             TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred             CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence            999999999876532110                     11123567788899987 79999999999999999999876


Q ss_pred             ceeeeeccCCC----------------CCcceeeEEeC--CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEe
Q 026679          133 EKRCGFSLEPS----------------PNTNTEATFTP--DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW  194 (235)
Q Consensus       133 ~~~~~~~~~~~----------------~~~i~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~  194 (235)
                      +....+..+..                ........|+|  ++.++++|+.||.|++||+.+++....+..|..+|.+++|
T Consensus       288 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf  367 (393)
T 4gq1_A          288 NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCW  367 (393)
T ss_dssp             ----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEE
T ss_pred             CCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEE
Confidence            65443321110                01122334444  4557788999999999999999998888889999999999


Q ss_pred             ecCCCEEEEcc-cceEEeeCC
Q 026679          195 APRRAMFVAAS-SVLSFWIPN  214 (235)
Q Consensus       195 ~~~~~~l~~~~-~~i~iw~~~  214 (235)
                      +|||++|++++ +.+.+|.+.
T Consensus       368 spdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          368 HQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             CTTSSEEEEEESSEEEEEEEG
T ss_pred             cCCCCEEEEEeCCCeEEEEEe
Confidence            99999999998 667777664

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.7e-33  Score=237.89  Aligned_cols=210  Identities=20%  Similarity=0.301  Sum_probs=186.3

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC--CCCEEEEEecCCe
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGA   77 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~   77 (235)
                      .+++.+..+++|.+.|.+++|+|++++|++++.|++|++||+.+++.+..+..|...+  ++|+|  ++.++++++.|+.
T Consensus       645 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~  724 (1249)
T 3sfz_A          645 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF  724 (1249)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred             CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence            4567788899999999999999999999999999999999999999999998887655  88999  5568999999999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc-----------------
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-----------------  140 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----------------  140 (235)
                      |++||+.++..    ...+.+|...|.+++|+|+++.+++++.||.|++||+++++....+..                 
T Consensus       725 v~vwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (1249)
T 3sfz_A          725 LKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI  800 (1249)
T ss_dssp             EEEEETTSSSE----EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred             EEEEECCCcch----hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence            99999988664    666778999999999999999999999999999999987654433211                 


Q ss_pred             ------------------------------------CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecC
Q 026679          141 ------------------------------------EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG  184 (235)
Q Consensus       141 ------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  184 (235)
                                                          ..+...+.+++|+|+++++++++.||.|++||+.++..+..+.+
T Consensus       801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  880 (1249)
T 3sfz_A          801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG  880 (1249)
T ss_dssp             BCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC
Confidence                                                13456788999999999999999999999999999999999999


Q ss_pred             CCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          185 NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       185 ~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      |...|.+++|+|++.++++++  +.+++|++..
T Consensus       881 h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             CccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence            999999999999999999998  7899999753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-32  Score=209.66  Aligned_cols=200  Identities=17%  Similarity=0.322  Sum_probs=166.3

Q ss_pred             ccccceeEEEeecCCC-eeEEEeccceEEEEec----Ccce------eeeeeec----------cC--CceEEEcCCCCE
Q 026679           12 GHKERVISLCMSPVND-SFMSGSLDHSVRIWDL----RVNA------CQGILRL----------RG--RPTVAFDQQGLV   68 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~----~~~~------~~~~~~~----------~~--~~~~~~~~~~~~   68 (235)
                      .|.+.|++++|+|+++ +|++++.|+.|++||+    .+++      ....+..          +.  +.+++|+|++++
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            3558999999999999 9999999999999999    8777      3444433          23  344999999999


Q ss_pred             EEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec---------
Q 026679           69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS---------  139 (235)
Q Consensus        69 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---------  139 (235)
                      |++++.||.|++||. ++.    ....+..|...|.+++|+|++++|++++.|+.|++||+.+++....+.         
T Consensus       123 l~~~~~dg~i~i~~~-~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          123 IVTGVENGELRLWNK-TGA----LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             EEEEETTSCEEEEET-TSC----EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             EEEEeCCCeEEEEeC-CCC----eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence            999999999999993 222    255677899999999999999999999999999999998776554332         


Q ss_pred             ---------------------------------------------cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcC
Q 026679          140 ---------------------------------------------LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN  174 (235)
Q Consensus       140 ---------------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  174 (235)
                                                                   ...+...+.+++|+|++++|++++.||.|++||++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  277 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG  277 (425)
T ss_dssp             --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred             eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence                                                         12345678999999999999999999999999999


Q ss_pred             CCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          175 TRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +++.+..+..|...|.+++|+|++ ++++++  +.+++|+++...
T Consensus       278 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~  321 (425)
T 1r5m_A          278 NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT  321 (425)
T ss_dssp             SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred             CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence            999999999999999999999999 777776  889999997654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.8e-32  Score=213.48  Aligned_cols=209  Identities=15%  Similarity=0.285  Sum_probs=180.4

Q ss_pred             chhhhhhhhcccccceeEEEeec--CCCeeEEEeccceEEEEecCccee-----------------------eeeeeccC
Q 026679            2 YDNRILRYFKGHKERVISLCMSP--VNDSFMSGSLDHSVRIWDLRVNAC-----------------------QGILRLRG   56 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~-----------------------~~~~~~~~   56 (235)
                      ++++.+..+.+|.+.|.+++|++  ++.++++++.|++|++||+.++..                       ...+..+.
T Consensus       191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence            46777888999999999999994  678999999999999999987653                       33455666


Q ss_pred             CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceee
Q 026679           57 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC  136 (235)
Q Consensus        57 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  136 (235)
                      ..+.+++++++.+++++.||.|++||+++.+.    ...+.+|...|.+++|+|+++.+++++.|+.|++||+++++.+.
T Consensus       271 ~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  346 (464)
T 3v7d_B          271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC----LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY  346 (464)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            67778899999999999999999999987654    56677899999999999999999999999999999999998887


Q ss_pred             eeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679          137 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP  215 (235)
Q Consensus       137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~  215 (235)
                      .+.  .|...+.+++|+  +++|++++.||.|++||+++++...... +...+..++|+|++.++++++ +.+++||+++
T Consensus       347 ~~~--~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~  421 (464)
T 3v7d_B          347 TLQ--GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQFNIYNLRS  421 (464)
T ss_dssp             EEC--CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEETTEEEEEETTT
T ss_pred             EEe--CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEecCCeEEEEECCC
Confidence            665  455679999997  5799999999999999999888766654 667788899999999999998 8899999987


Q ss_pred             CCCC
Q 026679          216 SSNS  219 (235)
Q Consensus       216 ~~~~  219 (235)
                      ++..
T Consensus       422 g~~~  425 (464)
T 3v7d_B          422 GKLV  425 (464)
T ss_dssp             CCEE
T ss_pred             CcEE
Confidence            7654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-32  Score=212.33  Aligned_cols=201  Identities=10%  Similarity=0.110  Sum_probs=169.6

Q ss_pred             cccccceeEEEeecCCCee-EEEeccceEEEEecC--cceeeeeeec--cCC--ceEEEcCCCCEEEEEecCCeEEEEec
Q 026679           11 KGHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLR--VNACQGILRL--RGR--PTVAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~--~~~~~~~~~~--~~~--~~~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      .+|.+.|++++|+|++++| ++++.||.|++||+.  +++....+..  +..  ..++|+|++++|++++.+|.+++|++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            4677789999999999996 899999999999998  7887777753  233  34999999999999999999999999


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccC---CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      .+..........+.+|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+ ...|...|.+++|+ ++++|+
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~s-d~~~l~  256 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW-LFGHKHFVSSICCG-KDYLLL  256 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-CCCCSSCEEEEEEC-STTEEE
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-ecCCCCceEEEEEC-CCCEEE
Confidence            8766432122245578899999999999   999999999999999999988876653 34566789999999 999999


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecC-------------------------CCcceeEEEeecCCCEEEEcc---cceEEee
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNG-------------------------NIGVVACLKWAPRRAMFVAAS---SVLSFWI  212 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~-------------------------~~~~v~~~~~~~~~~~l~~~~---~~i~iw~  212 (235)
                      +++.|+.|++||+++++.+..+..                         ....|.+++|+|++++|++++   +.+++|+
T Consensus       257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            999999999999999998777752                         234689999999999998875   6699999


Q ss_pred             C
Q 026679          213 P  213 (235)
Q Consensus       213 ~  213 (235)
                      +
T Consensus       337 ~  337 (450)
T 2vdu_B          337 M  337 (450)
T ss_dssp             E
T ss_pred             e
Confidence            9

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-34  Score=223.50  Aligned_cols=202  Identities=13%  Similarity=0.114  Sum_probs=159.6

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce-eeeeeeccCCce--E--EEcCCC-CEEEEEecCCeEEEE
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRGRPT--V--AFDQQG-LVFAVAMEAGAIKLF   81 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~--~--~~~~~~-~~l~~~~~dg~v~i~   81 (235)
                      ..+.+|...|++++|+++ ..|++|+.||+|++||++++. +...+..|...+  +  +++|++ .+|++++.|++|++|
T Consensus       260 ~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW  338 (524)
T 2j04_B          260 LTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF  338 (524)
T ss_dssp             EEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred             EEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence            467889999999999986 589999999999999998764 445577776655  5  467787 899999999999999


Q ss_pred             eccCCCCCCceeEeecCCC--cceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE
Q 026679           82 DSRSYDKGPFDTFLVGGDT--AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV  159 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  159 (235)
                      |+++.+.    ...+.+|.  ..|.+++|+|+++.+++++.|+.|++||++++.....+.  .|...|.+++|+|+|++|
T Consensus       339 D~~~~~~----~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~--gH~~~V~sva~Sp~g~~l  412 (524)
T 2j04_B          339 NPKDIAT----TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV--SRETTITAIGVSRLHPMV  412 (524)
T ss_dssp             CGGGHHH----HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE--ECSSCEEEEECCSSCCBC
T ss_pred             ECCCCCc----ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee--cCCCceEEEEeCCCCCeE
Confidence            9987543    11222333  347899999999999999999999999999988766555  466779999999999999


Q ss_pred             EEeCCCCcEEEEEcCCC--------------------------------------------ceeeeecCCCcceeEEEee
Q 026679          160 VSGSGDGTLHAWNINTR--------------------------------------------NEVACWNGNIGVVACLKWA  195 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~--------------------------------------------~~~~~~~~~~~~v~~~~~~  195 (235)
                      ++|+.||+|++||+...                                            ..+..+.+|...|.+++|+
T Consensus       413 ~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs  492 (524)
T 2j04_B          413 LAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN  492 (524)
T ss_dssp             EEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEEC
T ss_pred             EEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECC
Confidence            99999999999985311                                            1122334577889999999


Q ss_pred             cCCC---EEEEcc--cceEEeeCCCC
Q 026679          196 PRRA---MFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       196 ~~~~---~l~~~~--~~i~iw~~~~~  216 (235)
                      |++.   .+++|+  |.|+||++...
T Consensus       493 p~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          493 ETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             CSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             CCCCccHHHHhhccCceEEEEEcccc
Confidence            9964   888887  88999998764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-32  Score=212.86  Aligned_cols=193  Identities=13%  Similarity=0.132  Sum_probs=157.4

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-------CceEEEcCCCCEEEEEecCCeEEEEecc
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-------RPTVAFDQQGLVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~dg~v~i~d~~   84 (235)
                      .|...|.+++|+|+|++||+++.||.|++||.+.  ....+. +.       ..+++|+|+|++|++|+.||+|++||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            5688999999999999999999999999999544  555555 44       3349999999999999999999999998


Q ss_pred             CCCCCCc---eeEee----cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCcee---eeeccCCCCCcceeeEEeC
Q 026679           85 SYDKGPF---DTFLV----GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR---CGFSLEPSPNTNTEATFTP  154 (235)
Q Consensus        85 ~~~~~~~---~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~i~~~~~~~  154 (235)
                      ++.....   ....+    .+|...|.+++|+|+|  +++++.|+.|++||+..++..   ..+. ..|...|.+++|+ 
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFs-  235 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIV-  235 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEE-
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEEEEEEE-
Confidence            8642111   22332    6678899999999999  888999999999999887742   2232 2455679999999 


Q ss_pred             CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEe--ecCCCEEEEcc--cceEEeeCC
Q 026679          155 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW--APRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       155 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~--~~i~iw~~~  214 (235)
                       |+.||+++ ++.|++||+.+++......+|...|..++|  +|++..+++++  |. ++|..+
T Consensus       236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence             68999887 699999999887774444479999999999  99999999998  66 899886

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.9e-32  Score=200.30  Aligned_cols=193  Identities=11%  Similarity=0.081  Sum_probs=143.7

Q ss_pred             cceeEEEeecC----CCeeEEEec--------------------cceEEEEec-CcceeeeeeeccC--CceEEEcC---
Q 026679           15 ERVISLCMSPV----NDSFMSGSL--------------------DHSVRIWDL-RVNACQGILRLRG--RPTVAFDQ---   64 (235)
Q Consensus        15 ~~v~~~~~~~~----~~~l~s~~~--------------------d~~i~vwd~-~~~~~~~~~~~~~--~~~~~~~~---   64 (235)
                      +.|.+++++|+    ++.+++++.                    |+.|++|++ .+++.+..+..+.  ..+++|++   
T Consensus       112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g  191 (356)
T 2w18_A          112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG  191 (356)
T ss_dssp             EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred             cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence            46677777777    667776553                    888888888 4466666655554  45588888   


Q ss_pred             CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCC---cceeEEEEccCCCeE------------EEecCCCcEEEEEc
Q 026679           65 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT---AEVCDIKFSNDGKSM------------LLTTTNNNIYVLDA  129 (235)
Q Consensus        65 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~d~~i~~~d~  129 (235)
                      ++..|++++.|++|++||+++++.    ...+.+|.   ..+.+++|+|+|..+            ++|+.|++|++||.
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~----l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~  267 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQL----LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP  267 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCE----EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred             CCceEEEecCCCcEEEEECCCCcE----EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence            779999999999999999998774    44444433   467788999999876            45778999999999


Q ss_pred             CCCceeeeecc---CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCccee-EEEeecCCCEEEEcc
Q 026679          130 YGGEKRCGFSL---EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA-CLKWAPRRAMFVAAS  205 (235)
Q Consensus       130 ~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~  205 (235)
                      .+++.+..+..   .+|...+.  ..+.++.++++++.|++|++||+.+++.+.++.+|...+. .++|+|||++|++|+
T Consensus       268 ~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS  345 (356)
T 2w18_A          268 KTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ  345 (356)
T ss_dssp             TTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred             CCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence            99987765431   23433333  3333478999999999999999999999999998877655 589999999999998


Q ss_pred             --cceEEeeC
Q 026679          206 --SVLSFWIP  213 (235)
Q Consensus       206 --~~i~iw~~  213 (235)
                        ++|+||++
T Consensus       346 ~D~TIklWd~  355 (356)
T 2w18_A          346 KDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCcEEEecC
Confidence              88999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-33  Score=214.67  Aligned_cols=202  Identities=15%  Similarity=0.208  Sum_probs=164.4

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecC---cceeeeeeeccC------------Cce--EE--EcCCCCEEEEE
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR---VNACQGILRLRG------------RPT--VA--FDQQGLVFAVA   72 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~------------~~~--~~--~~~~~~~l~~~   72 (235)
                      +|...|++++|+|++++|++++.||.|++||++   .++.......+.            ..+  +.  +++++.+++++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            589999999999999999999999999999995   444444333221            112  33  55789999999


Q ss_pred             ecCCeEEEEeccCCCCCCceeEeecC--CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceee
Q 026679           73 MEAGAIKLFDSRSYDKGPFDTFLVGG--DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA  150 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~  150 (235)
                      +.||.|++||+++.+.    ...+..  |...|.+++|+|++++|++++.||.|++||+++++.+..+... +...|.++
T Consensus       189 ~~d~~i~iwd~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~  263 (437)
T 3gre_A          189 TNLSRVIIFDIRTLER----LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-DHAPITHV  263 (437)
T ss_dssp             ETTSEEEEEETTTCCE----EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT-TCEEEEEE
T ss_pred             eCCCeEEEEeCCCCee----eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC-CCCceEEE
Confidence            9999999999988664    444545  7889999999999999999999999999999999888776543 44579999


Q ss_pred             EEe----CCCcEEEEeCCCCcEEEEEcCCCceeeeecC--------------------------CCcceeEEEeecCCCE
Q 026679          151 TFT----PDGQYVVSGSGDGTLHAWNINTRNEVACWNG--------------------------NIGVVACLKWAPRRAM  200 (235)
Q Consensus       151 ~~~----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~  200 (235)
                      +|+    |++.+|++++.||.|++||+++++.+..+.+                          |...|.+++|+ ++.+
T Consensus       264 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~  342 (437)
T 3gre_A          264 EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKI  342 (437)
T ss_dssp             EECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEE
T ss_pred             EeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceE
Confidence            554    5788999999999999999998887766653                          55668899999 7788


Q ss_pred             EEEcc--cceEEeeCCCCCCC
Q 026679          201 FVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       201 l~~~~--~~i~iw~~~~~~~~  219 (235)
                      |++++  +.|++||+...+..
T Consensus       343 l~s~~~d~~i~~wd~~~~~~~  363 (437)
T 3gre_A          343 LLTDEATSSIVMFSLNELSSS  363 (437)
T ss_dssp             EEEEGGGTEEEEEETTCGGGC
T ss_pred             EEecCCCCeEEEEECCCcccc
Confidence            98887  88999999876543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2e-32  Score=211.51  Aligned_cols=205  Identities=14%  Similarity=0.215  Sum_probs=170.5

Q ss_pred             hhcccccceeEEEeecC-CCeeEEEeccceEEEEecCc----------ceeeeeeeccCCc--eEEEcCCCC-EEEEEec
Q 026679            9 YFKGHKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRV----------NACQGILRLRGRP--TVAFDQQGL-VFAVAME   74 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~----------~~~~~~~~~~~~~--~~~~~~~~~-~l~~~~~   74 (235)
                      ...+|.+.|++++|+|+ +.+|++++.||.|++||+..          ......+..|...  .++|+|++. +|++|+.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            34579999999999997 67899999999999999986          4666677777654  499999988 9999999


Q ss_pred             CCeEEEEeccCCCCCCce---eEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCC---ceeeeeccCCCCCcc
Q 026679           75 AGAIKLFDSRSYDKGPFD---TFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGG---EKRCGFSLEPSPNTN  147 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~i  147 (235)
                      ||.|++||+.........   ......|...|.+++|+| ++..|++++.|+.|++||++++   +....+  ..|...|
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v  280 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV--DAHTAEV  280 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE--ECCSSCE
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe--ecCCCCe
Confidence            999999999874321111   234567889999999999 6788889999999999999987   344433  3556779


Q ss_pred             eeeEEeCCCc-EEEEeCCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecCCC-EEEEcc--cceEEeeCCC
Q 026679          148 TEATFTPDGQ-YVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       148 ~~~~~~~~~~-~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~~i~iw~~~~  215 (235)
                      ++++|+|+++ +|++|+.||.|++||+++ ...+..+..|...|.+++|+|++. +|++++  +.|++|++..
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            9999999887 688999999999999998 567888889999999999999985 577776  7899999976

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.9e-33  Score=209.42  Aligned_cols=200  Identities=13%  Similarity=0.215  Sum_probs=167.0

Q ss_pred             ccccceeEEEeecC---CCeeEEEeccceEEEEecCcce-eeeeeeccCCce--E------EEcCCCCEEEEEecCCeEE
Q 026679           12 GHKERVISLCMSPV---NDSFMSGSLDHSVRIWDLRVNA-CQGILRLRGRPT--V------AFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus        12 ~h~~~v~~~~~~~~---~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~--~------~~~~~~~~l~~~~~dg~v~   79 (235)
                      +|..+|.+++|+|+   +++|++++.||.|++||+.+++ ....+..|...+  +      +|+|+++.|++++.||.|+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~  142 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK  142 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence            78999999999998   6999999999999999999887 778888777655  5      3578999999999999999


Q ss_pred             EEeccCCCCCCceeEeecCC----CcceeEEE----EccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeE
Q 026679           80 LFDSRSYDKGPFDTFLVGGD----TAEVCDIK----FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT  151 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~----~~~v~~~~----~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~  151 (235)
                      +||+++....   ...+..+    ...+.+++    |+|+++++++++.|+.|++||+++++.....   .+...+.+++
T Consensus       143 vwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~v~~~~  216 (357)
T 3i2n_A          143 VWDPRQKDDP---VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET---NIKNGVCSLE  216 (357)
T ss_dssp             EECTTSCSSC---SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE---ECSSCEEEEE
T ss_pred             EEeCCCCCCc---ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec---CCCCceEEEE
Confidence            9999886521   2222222    34788888    7889999999999999999999998875442   3446799999


Q ss_pred             EeC---CCcEEEEeCCCCcEEEEEcCCCceeeeec-----CCCcceeEEEeecCCC-EEEEcc--cceEEeeCCCCC
Q 026679          152 FTP---DGQYVVSGSGDGTLHAWNINTRNEVACWN-----GNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       152 ~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-~l~~~~--~~i~iw~~~~~~  217 (235)
                      |+|   ++++|++++.||.|++||+++++.+..+.     +|...|.+++|+|++. ++++++  +.+++|+++...
T Consensus       217 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          217 FDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             ESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             cCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            999   99999999999999999999887766655     8999999999999998 788887  789999997544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-32  Score=199.74  Aligned_cols=203  Identities=17%  Similarity=0.219  Sum_probs=171.5

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC-CCCEEEEEecCCeEEE
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKL   80 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~v~i   80 (235)
                      ++.+..+.+|...|.+++|  ++++|++++.|+.|++||  .++....+..+...+  +++.| +++.+++++.||.+++
T Consensus        94 ~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  169 (313)
T 3odt_A           94 EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL  169 (313)
T ss_dssp             SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence            3556778899999999999  478999999999999999  666777777766555  77777 9999999999999999


Q ss_pred             EeccCCCCCCceeEeecC-CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE
Q 026679           81 FDSRSYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV  159 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  159 (235)
                      ||...      ....+.. |...+.+++|+|++. +++++.|+.|++||+++++.+..+..  |...+.+++|+|++ .|
T Consensus       170 ~d~~~------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l  239 (313)
T 3odt_A          170 WQNDK------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG--HESFVYCIKLLPNG-DI  239 (313)
T ss_dssp             EETTE------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTS-CE
T ss_pred             EecCc------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc--CCceEEEEEEecCC-CE
Confidence            99332      1333444 888999999999998 99999999999999999988877654  45679999999999 58


Q ss_pred             EEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCCCCCC
Q 026679          160 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNST  220 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~~~~  220 (235)
                      ++++.||.|++||+++++.+..+..|...|.+++|+|++++++++. +.+++|+++......
T Consensus       240 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          240 VSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             EEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC
T ss_pred             EEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceee
Confidence            8999999999999999999999999999999999999999665554 889999998765443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.2e-32  Score=219.53  Aligned_cols=204  Identities=16%  Similarity=0.283  Sum_probs=178.6

Q ss_pred             hhhhhhcccccc-eeEEEeec--CCCeeEEEeccceEEEEecCcc--------eeeeeeeccCCce--EEEcCCCCEEEE
Q 026679            5 RILRYFKGHKER-VISLCMSP--VNDSFMSGSLDHSVRIWDLRVN--------ACQGILRLRGRPT--VAFDQQGLVFAV   71 (235)
Q Consensus         5 ~~~~~~~~h~~~-v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~--------~~~~~~~~~~~~~--~~~~~~~~~l~~   71 (235)
                      +.+..+.+|... |++++|+|  ++++|++++.||.|++||+.++        .....+..+...+  ++|+|+++++++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            677889999999 99999999  9999999999999999999754        5666666665444  999999999999


Q ss_pred             EecC----CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCC-eEEEecCCCcEEEEEcCCCceeeeeccCCCCC-
Q 026679           72 AMEA----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN-  145 (235)
Q Consensus        72 ~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-  145 (235)
                      ++.+    +.|.+||..  +    ....+..|...|.+++|+|+++ .+++++.|+.|++||+.+++....+..  |.. 
T Consensus       134 ~~~~~~~~~~v~~~d~~--~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~  205 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDSG--N----SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT--HHKQ  205 (615)
T ss_dssp             EECCSSCSEEEEETTTC--C----EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS--SSCT
T ss_pred             eccCCCCccEEEEEECC--C----cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc--cCCC
Confidence            9988    789999832  2    2556778999999999999998 799999999999999999888776654  445 


Q ss_pred             --cceeeEEeCC-CcEEEEeCCCCcEEEEEcCCCceeeee-c---CCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          146 --TNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACW-N---GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       146 --~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                        .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .   .|...|.+++|+ ++.+|++++  +.+++|+++..
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~  284 (615)
T 1pgu_A          206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS  284 (615)
T ss_dssp             TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred             CceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence              7999999999 999999999999999999999999888 5   899999999999 999999997  78999999865


Q ss_pred             C
Q 026679          217 S  217 (235)
Q Consensus       217 ~  217 (235)
                      +
T Consensus       285 ~  285 (615)
T 1pgu_A          285 K  285 (615)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.8e-32  Score=233.61  Aligned_cols=203  Identities=18%  Similarity=0.272  Sum_probs=175.2

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~   86 (235)
                      .+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...+  ++|+|+++++++++.||.|++||+.++
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~  689 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG  689 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence            456899999999999999999999999999999999999999998877655  999999999999999999999999987


Q ss_pred             CCCCceeEeecCCCcceeEEEEcc--CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                      +.    ...+.+|...|.+++|+|  ++..+++++.|+.|++||+++++....+.  .|...|.+++|+|++++|++++.
T Consensus       690 ~~----~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~  763 (1249)
T 3sfz_A          690 KL----VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSA  763 (1249)
T ss_dssp             CE----EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC--CCSSCEEEEEECSSTTEEEEEES
T ss_pred             ce----EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec--CCCCCEEEEEEecCCCEEEEEEC
Confidence            64    566778999999999999  55688999999999999999998876655  45677999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeee-------------------------------------------------------cCCCcce
Q 026679          165 DGTLHAWNINTRNEVACW-------------------------------------------------------NGNIGVV  189 (235)
Q Consensus       165 dg~i~v~d~~~~~~~~~~-------------------------------------------------------~~~~~~v  189 (235)
                      ||.|++||+++++....+                                                       .+|...|
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v  843 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI  843 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence            999999999776543322                                                       1566778


Q ss_pred             eEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          190 ACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       190 ~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      .+++|+|++.++++++  +.+++|++++..
T Consensus       844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~  873 (1249)
T 3sfz_A          844 QYCDFSPYDHLAVIALSQYCVELWNIDSRL  873 (1249)
T ss_dssp             CEEEECSSTTEEEEECSSSCEEEEETTTTE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            8888888888888887  778888887543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-32  Score=206.31  Aligned_cols=203  Identities=11%  Similarity=0.104  Sum_probs=169.3

Q ss_pred             hhhhcccccceeEEEeecCCC-eeEEEeccceEEEEec-Ccceeeeeeec--cCCc--eEEEcCCCCEEEEEecCCeEEE
Q 026679            7 LRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDL-RVNACQGILRL--RGRP--TVAFDQQGLVFAVAMEAGAIKL   80 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~-~~~~~~~~~~~--~~~~--~~~~~~~~~~l~~~~~dg~v~i   80 (235)
                      ...+.+|...|++++|+|+++ +|++++.||.|++||+ .+++. ..+..  +...  .++|+| +..+++++.|+.|++
T Consensus        49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~i  126 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEV  126 (342)
T ss_dssp             EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEE
T ss_pred             ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEE
Confidence            345568999999999999999 9999999999999999 77755 45555  5544  489999 999999999999999


Q ss_pred             EeccC---------CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC-CceeeeeccCCCCCcceee
Q 026679           81 FDSRS---------YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEA  150 (235)
Q Consensus        81 ~d~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~i~~~  150 (235)
                      ||+++         .+.    ...+ .|...+.+++|+|++  +++++.++.|++||+++ +..........+...+.++
T Consensus       127 wd~~~~~~~~~~~~~~~----~~~~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i  199 (342)
T 1yfq_A          127 IDPRNYGDGVIAVKNLN----SNNT-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV  199 (342)
T ss_dssp             ECHHHHTTBCEEEEESC----SSSS-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE
T ss_pred             EcccccccccccccCCe----eeEE-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE
Confidence            99986         432    1122 277899999999987  99999999999999998 6543333344566779999


Q ss_pred             EEeC-CCcEEEEeCCCCcEEEEEcCCC------ceeeeecCCCc---------ceeEEEeecCCCEEEEcc--cceEEee
Q 026679          151 TFTP-DGQYVVSGSGDGTLHAWNINTR------NEVACWNGNIG---------VVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       151 ~~~~-~~~~l~~~~~dg~i~v~d~~~~------~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      +|+| ++++|++++.||.|++|+++..      +....+..|..         .|.+++|+|++++|++++  +.+++||
T Consensus       200 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence            9999 9999999999999999999876      77778877755         999999999999999987  7899999


Q ss_pred             CCCCCC
Q 026679          213 PNPSSN  218 (235)
Q Consensus       213 ~~~~~~  218 (235)
                      ++..+.
T Consensus       280 ~~~~~~  285 (342)
T 1yfq_A          280 LQTRKK  285 (342)
T ss_dssp             TTTTEE
T ss_pred             CccHhH
Confidence            986543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=198.12  Aligned_cols=204  Identities=15%  Similarity=0.200  Sum_probs=171.7

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEE
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      .++++.+++|.+.|++++| |++++|++++.||.|++||+.+++....+..+...+  ++|+|+++.+++++.||.+++|
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~   86 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV   86 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence            3567789999999999999 899999999999999999999998888888776554  9999999999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC-CCcEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVV  160 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~  160 (235)
                      ++...... .....+..|...|.+++|  +++.+++++.|+.|++||  .++....+.  .+...+.++.|.| ++++++
T Consensus        87 ~~~~~~~~-~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~  159 (313)
T 3odt_A           87 PLFATSGE-DPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ--AHNASVWDAKVVSFSENKFL  159 (313)
T ss_dssp             ETTCCTTS-CC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE--CCSSCEEEEEEEETTTTEEE
T ss_pred             EeeecCCC-CcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc--cCCCceeEEEEccCCCCEEE
Confidence            99875432 224456788999999999  577999999999999999  555555444  4556799999998 999999


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecC-CCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      +++.||.|++||  ..+....+.. |...+.+++|+|++. +++++  +.+++||++..+.
T Consensus       160 ~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~  217 (313)
T 3odt_A          160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV  217 (313)
T ss_dssp             EEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE
T ss_pred             EEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh
Confidence            999999999999  4556666666 889999999999998 66665  8899999986543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.1e-32  Score=204.05  Aligned_cols=198  Identities=12%  Similarity=0.098  Sum_probs=166.4

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcce---eeeeeeccCCc--eEEEcCCCC-EEEEEecCCeEEEE
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA---CQGILRLRGRP--TVAFDQQGL-VFAVAMEAGAIKLF   81 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~~~~--~~~~~~~~~-~l~~~~~dg~v~i~   81 (235)
                      ....+|.+.|++++|+|++++|++++.|+.|++||+.++.   ....+..+...  +++|+|+++ +|++++.||.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3456899999999999999999999999999999998776   23334445443  499999999 99999999999999


Q ss_pred             ec-cCCCCCCceeEeecC--CCcceeEEEEccCCCeEEEecCCCcEEEEEcCC---------CceeeeeccCCCCCccee
Q 026679           82 DS-RSYDKGPFDTFLVGG--DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG---------GEKRCGFSLEPSPNTNTE  149 (235)
Q Consensus        82 d~-~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~i~~  149 (235)
                      |+ .+..     ...+..  |...|.+++|+| ++.+++++.|+.|++||+++         ++....+.   +...+.+
T Consensus        85 d~~~~~~-----~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~  155 (342)
T 1yfq_A           85 DLIGSPS-----FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIFT  155 (342)
T ss_dssp             CSSSSSS-----EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEEE
T ss_pred             EeccCCc-----eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---eCCceEE
Confidence            99 7654     355667  899999999999 99999999999999999987         65554443   5577999


Q ss_pred             eEEeCCCcEEEEeCCCCcEEEEEcCC-Cce--eeeecCCCcceeEEEeec-CCCEEEEcc--cceEEeeCCCC
Q 026679          150 ATFTPDGQYVVSGSGDGTLHAWNINT-RNE--VACWNGNIGVVACLKWAP-RRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       150 ~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      ++|+|++  +++++.|+.|++||+++ +..  ......|...+.+++|+| ++.++++++  +.+++|+++..
T Consensus       156 ~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          156 MDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             EEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence            9999987  89999999999999988 543  234456788999999999 999999998  78999999765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.7e-31  Score=206.51  Aligned_cols=204  Identities=19%  Similarity=0.286  Sum_probs=176.7

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      .+++.+..+.+|.+.|.+++|  ++++|++|+.||+|++||+.+++.+..+..+...+.++..++..+++++.||.|++|
T Consensus       161 ~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vw  238 (435)
T 1p22_A          161 NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW  238 (435)
T ss_dssp             SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred             CCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEE
Confidence            456777888999999999999  678999999999999999999999999988887775555567799999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                      |+.+.... .......+|...|.+++|  +++++++++.||.|++||+++++.+..+..  |...+.++.+  +++++++
T Consensus       239 d~~~~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~--~~~~l~~  311 (435)
T 1p22_A          239 DMASPTDI-TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG--HKRGIACLQY--RDRLVVS  311 (435)
T ss_dssp             ECSSSSCC-EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEE--ETTEEEE
T ss_pred             eCCCCCCc-eeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC--CCCcEEEEEe--CCCEEEE
Confidence            99886542 122556788999999999  688999999999999999999988877654  4566888888  4679999


Q ss_pred             eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          162 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      |+.||.|++||+++++.+..+.+|...|.+++|  ++.+|++++  +.+++||+...
T Consensus       312 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          312 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred             EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence            999999999999999999999999999999999  788899887  88999998654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-32  Score=204.14  Aligned_cols=203  Identities=10%  Similarity=0.062  Sum_probs=155.3

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC---------cceeeeeee-ccC--CceEEEcC--CCCEE
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR---------VNACQGILR-LRG--RPTVAFDQ--QGLVF   69 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~---------~~~~~~~~~-~~~--~~~~~~~~--~~~~l   69 (235)
                      ++.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +++.+..+. .+.  ...++++|  +++++
T Consensus        68 ~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  142 (343)
T 3lrv_A           68 SKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYF  142 (343)
T ss_dssp             SSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEE
T ss_pred             CcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEE
Confidence            33444443  467888888887   9999999999999765         344344443 232  33499999  99999


Q ss_pred             EEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCcee-eeeccCCCCCcce
Q 026679           70 AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR-CGFSLEPSPNTNT  148 (235)
Q Consensus        70 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~  148 (235)
                      ++++.||.|++||+++++.   .......+...+.+++|+|++.+|++|+.||.|++||+++++.. ..+.. .|..+|.
T Consensus       143 ~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~  218 (343)
T 3lrv_A          143 IWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-DEEAKIK  218 (343)
T ss_dssp             EEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-CTTSCEE
T ss_pred             EEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-cCCCCEE
Confidence            9999999999999987654   12222345667999999999999999999999999999998876 54543 3667899


Q ss_pred             eeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecC---CCccee--EEEeecCCCEEEE--c-ccceEEeeCCCC
Q 026679          149 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG---NIGVVA--CLKWAPRRAMFVA--A-SSVLSFWIPNPS  216 (235)
Q Consensus       149 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~l~~--~-~~~i~iw~~~~~  216 (235)
                      +++|+|++.+|++++ ++.|++||+++++.+..+..   |...+.  +++|+|++++|++  + ++.+++|+++..
T Consensus       219 ~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          219 EVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             EEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            999999999999999 45999999999887665543   434444  5999999999999  5 477999998654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-31  Score=206.19  Aligned_cols=200  Identities=11%  Similarity=0.082  Sum_probs=163.9

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcce---eeeeeecc-----------------------------------
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA---CQGILRLR-----------------------------------   55 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~-----------------------------------   55 (235)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++   .+..+..+                                   
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3588999999999966655 57899999999887   55554422                                   


Q ss_pred             ---------------------CCceEEEcCCCCEE-EEEecCCeEEEEecc--CCCCCCceeEeecCCCcceeEEEEccC
Q 026679           56 ---------------------GRPTVAFDQQGLVF-AVAMEAGAIKLFDSR--SYDKGPFDTFLVGGDTAEVCDIKFSND  111 (235)
Q Consensus        56 ---------------------~~~~~~~~~~~~~l-~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~  111 (235)
                                           .+.+++|+|+++.| ++++.||.|++||+.  ++..  ........+...|.+++|+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV--LKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC--EEEEEEEECSSCEEEEEECTT
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce--eeeeecccCCCCceEEEEcCC
Confidence                                 12348999999996 888899999999998  5443  223332356788999999999


Q ss_pred             CCeEEEecCCCcEEEEEcCCCceee--eeccCCCCCcceeeEEeCC---CcEEEEeCCCCcEEEEEcCCCceeee-ecCC
Q 026679          112 GKSMLLTTTNNNIYVLDAYGGEKRC--GFSLEPSPNTNTEATFTPD---GQYVVSGSGDGTLHAWNINTRNEVAC-WNGN  185 (235)
Q Consensus       112 ~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~  185 (235)
                      +++|++++.++.|++|++.+++...  ...+..|...|.+++|+|+   +++|++++.|+.|++||+++++.+.. +.+|
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h  240 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH  240 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence            9999999999999999998876542  1123345577999999999   99999999999999999999988877 5689


Q ss_pred             CcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          186 IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       186 ~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      ...|.+++|+ ++.+|++++  +.|++||+.+.+
T Consensus       241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~  273 (450)
T 2vdu_B          241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK  273 (450)
T ss_dssp             SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC
T ss_pred             CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999999 999999998  789999998765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-32  Score=225.95  Aligned_cols=209  Identities=17%  Similarity=0.204  Sum_probs=167.8

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceee--eeee---------ccC--CceEEEcCCCCEEEEEecC
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ--GILR---------LRG--RPTVAFDQQGLVFAVAMEA   75 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~---------~~~--~~~~~~~~~~~~l~~~~~d   75 (235)
                      .+++|...+.+++|+|++++|++|+.|++|++||+.++...  ..+.         .|.  +..++|+|++++||+|+.|
T Consensus       430 ~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D  509 (902)
T 2oaj_A          430 LLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET  509 (902)
T ss_dssp             SCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT
T ss_pred             cccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecC
Confidence            46778888888889999999999999999999999877432  1111         333  3449999999999999999


Q ss_pred             CeEEEEeccCCCCCC-----------------------------------------ceeEeecCCCcceeEEEEccCCCe
Q 026679           76 GAIKLFDSRSYDKGP-----------------------------------------FDTFLVGGDTAEVCDIKFSNDGKS  114 (235)
Q Consensus        76 g~v~i~d~~~~~~~~-----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~  114 (235)
                      |+|++||+.+.+...                                         .....+.+|...|++++|+|+| +
T Consensus       510 gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~  588 (902)
T 2oaj_A          510 GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-F  588 (902)
T ss_dssp             SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-E
T ss_pred             cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-E
Confidence            999999998653100                                         1134566799999999999999 9


Q ss_pred             EEEecCCCcEEEEEcCCCceeeee---ccC-CCCCcceeeEEe-----CCC---cEEEEeCCCCcEEEEEc---CCCcee
Q 026679          115 MLLTTTNNNIYVLDAYGGEKRCGF---SLE-PSPNTNTEATFT-----PDG---QYVVSGSGDGTLHAWNI---NTRNEV  179 (235)
Q Consensus       115 l~~~~~d~~i~~~d~~~~~~~~~~---~~~-~~~~~i~~~~~~-----~~~---~~l~~~~~dg~i~v~d~---~~~~~~  179 (235)
                      |++|+.|++|++||++++..+...   ... .|...|++++|+     |||   ++|++|+.|++|++||+   .+|+..
T Consensus       589 lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~  668 (902)
T 2oaj_A          589 VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD  668 (902)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE
T ss_pred             EEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEE
Confidence            999999999999999887765421   232 677889999999     885   89999999999999999   788888


Q ss_pred             eeecCC-----CcceeEEE-ee----------------------cCCCEEEEcccceEEeeCCCCCC
Q 026679          180 ACWNGN-----IGVVACLK-WA----------------------PRRAMFVAASSVLSFWIPNPSSN  218 (235)
Q Consensus       180 ~~~~~~-----~~~v~~~~-~~----------------------~~~~~l~~~~~~i~iw~~~~~~~  218 (235)
                      ..+.+|     .++|..++ |+                      +++.+|+++...++||++.+.+.
T Consensus       669 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k~  735 (902)
T 2oaj_A          669 VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKS  735 (902)
T ss_dssp             EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCCE
T ss_pred             EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCccccc
Confidence            887766     36777777 65                      56777777779999999977543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.7e-31  Score=206.55  Aligned_cols=203  Identities=17%  Similarity=0.241  Sum_probs=169.4

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceee---eeeeccCCceEEEcCCCCEEEEEecCCeE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ---GILRLRGRPTVAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~v   78 (235)
                      ++++.+..+.+|...|.+++|++  ..+++|+.||.|++||+.++...   ..+..+...+.++..+++.+++++.||.|
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i  278 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI  278 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             CCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeE
Confidence            45777888899999999999974  69999999999999999887655   55666666665555589999999999999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      ++||+++.+.    ...+..|...+.++++  +++++++++.||.|++||+++++.+..+.  .|...|.+++|  ++++
T Consensus       279 ~vwd~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~--~~~~  348 (435)
T 1p22_A          279 KVWNTSTCEF----VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRF--DNKR  348 (435)
T ss_dssp             EEEETTTCCE----EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEC--CSSE
T ss_pred             EEEECCcCcE----EEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe--CCcCcEEEEEe--cCCE
Confidence            9999988664    5667788999999988  46799999999999999999998887665  45567999988  7889


Q ss_pred             EEEeCCCCcEEEEEcCCCc---------eeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          159 VVSGSGDGTLHAWNINTRN---------EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      |++|+.||.|++||+++++         .+..+.+|.+.|.+++|  ++.+|++++  +.+++|++.....
T Consensus       349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred             EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence            9999999999999998766         77888999999999999  778899887  8899999976543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.7e-31  Score=203.11  Aligned_cols=205  Identities=16%  Similarity=0.262  Sum_probs=171.7

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      .+++.+..+.+|...|.+++|  +++++++++.||.|++||+++++.+..+..+...+.++..++..+++++.||.|++|
T Consensus       227 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~  304 (445)
T 2ovr_B          227 ETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW  304 (445)
T ss_dssp             SSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEE
Confidence            345667778888888988888  578888999999999999888888888887776665555588999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccC-CCCCcceeeEEeCCCcEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE-PSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~  160 (235)
                      |+++++.    ...+..|...+.++.+  +++++++++.||.|++||+++++....+..+ .+...|.+++|+  +++|+
T Consensus       305 d~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  376 (445)
T 2ovr_B          305 DVETGNC----IHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVI  376 (445)
T ss_dssp             ETTTCCE----EEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEE
T ss_pred             ECCCCCE----EEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEE
Confidence            9987664    5566788888887776  4678999999999999999999888777653 266779999985  57999


Q ss_pred             EeCCCCcEEEEEcCCCceeeee-----cCCCcceeEEEeecCCCEEEEcc--cc----eEEeeCCCC
Q 026679          161 SGSGDGTLHAWNINTRNEVACW-----NGNIGVVACLKWAPRRAMFVAAS--SV----LSFWIPNPS  216 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~--~~----i~iw~~~~~  216 (235)
                      +|+.||.|++||+++++.+..+     ..|.+.|.+++|+|++.++++++  |.    +.+||++..
T Consensus       377 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          377 TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            9999999999999999988877     46788999999999999999987  65    999999754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-31  Score=206.31  Aligned_cols=195  Identities=10%  Similarity=0.054  Sum_probs=151.0

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcce-----------------------------eeeeee-ccC--Cce
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-----------------------------CQGILR-LRG--RPT   59 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------------------------~~~~~~-~~~--~~~   59 (235)
                      .-...|.+++|+|||+++|+++.|++|+  |.+.++                             ....+. .+.  +..
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~   90 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV   90 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence            3457899999999999999999999995  433222                             111111 112  234


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCc-----ceeEEEEccCCCeEEEecCCCcEEEEEcCCCce
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA-----EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK  134 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  134 (235)
                      ++|+|+|..|++++.||.|++||...      ....+. |..     .+.+++|+|||++|++++.||+|++||+.++..
T Consensus        91 vawSPdG~~LAs~s~dg~V~iwd~~~------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l  163 (588)
T 2j04_A           91 CKPSPIDDWMAVLSNNGNVSVFKDNK------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE  163 (588)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEETTE------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCc------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence            99999999999999999999999543      223333 444     599999999999999999999999999998753


Q ss_pred             -------eeeec--cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCcee---eee-cCCCcceeEEEeecCCCEE
Q 026679          135 -------RCGFS--LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV---ACW-NGNIGVVACLKWAPRRAMF  201 (235)
Q Consensus       135 -------~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~---~~~-~~~~~~v~~~~~~~~~~~l  201 (235)
                             +..+.  ..+|...|.+++|+|+|  +++++.|+.+++||+.+++..   .++ .+|...|.+++|+  +..|
T Consensus       164 ~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~L  239 (588)
T 2j04_A          164 NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKV  239 (588)
T ss_dssp             TCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEE
T ss_pred             ccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEE
Confidence                   23332  24466889999999999  788888999999999877742   456 4788899999999  5788


Q ss_pred             EEcc-cceEEeeCCCCCCC
Q 026679          202 VAAS-SVLSFWIPNPSSNS  219 (235)
Q Consensus       202 ~~~~-~~i~iw~~~~~~~~  219 (235)
                      ++++ +.|++|++.+....
T Consensus       240 ASa~~~tIkLWd~~~~~~~  258 (588)
T 2j04_A          240 VLTCPGYVHKIDLKNYSIS  258 (588)
T ss_dssp             EEECSSEEEEEETTTTEEE
T ss_pred             EEEeCCeEEEEECCCCeEE
Confidence            8777 88999999877663

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.2e-31  Score=212.11  Aligned_cols=203  Identities=10%  Similarity=0.076  Sum_probs=174.5

Q ss_pred             cccccceeEEEeecCCCeeEEEeccceEEEEecCcc----eeeeeeeccCCc-e--EEEcC--CCCEEEEEecCCeEEEE
Q 026679           11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN----ACQGILRLRGRP-T--VAFDQ--QGLVFAVAMEAGAIKLF   81 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~-~--~~~~~--~~~~l~~~~~dg~v~i~   81 (235)
                      ..|.+.|.+++|+|++++|++++ ++.|++||+.++    +....+..|... +  ++|+|  ++++|++++.||.|++|
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw   93 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   93 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence            36889999999999999999998 789999999988    888888888766 4  99999  99999999999999999


Q ss_pred             eccCCCC----CCceeEeecCCCcceeEEEEccCCCeEEEecCC----CcEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679           82 DSRSYDK----GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT  153 (235)
Q Consensus        82 d~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~  153 (235)
                      |+.++..    .......+..|...|.+++|+|++++|++++.+    +.|++||  .++....+  ..|...|.+++|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~--~~~~~~v~~~~~~  169 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEV--SGHSQRINACHLK  169 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEEC--CSCSSCEEEEEEC
T ss_pred             eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceee--ecCCccEEEEEEC
Confidence            9975410    011244566788999999999999999999987    6888888  45555444  4566779999999


Q ss_pred             CCCc-EEEEeCCCCcEEEEEcCCCceeeeecCCCc---ceeEEEeecC-CCEEEEcc--cceEEeeCCCCCC
Q 026679          154 PDGQ-YVVSGSGDGTLHAWNINTRNEVACWNGNIG---VVACLKWAPR-RAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       154 ~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      |+++ .+++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|+ +++|++++  +.+++|++...+.
T Consensus       170 ~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  241 (615)
T 1pgu_A          170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF  241 (615)
T ss_dssp             SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE
T ss_pred             CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE
Confidence            9998 899999999999999999999999999998   9999999999 99999887  8899999976553

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.1e-30  Score=201.01  Aligned_cols=202  Identities=19%  Similarity=0.321  Sum_probs=176.7

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      .+++.+..+.+|.+.|++++|+  ++.+++|+.||+|++||+.+++....+..|...+.++..+++.+++++.||.|++|
T Consensus       147 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~w  224 (445)
T 2ovr_B          147 VTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW  224 (445)
T ss_dssp             TTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred             CCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEE
Confidence            4677788899999999999998  57999999999999999999999999988887775555567899999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                      |+.+++.    ...+..|...+.+++|  +++.+++++.|+.|++||+++++....+.  .|...+.++.|  +++++++
T Consensus       225 d~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~~  294 (445)
T 2ovr_B          225 DIETGQC----LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ--GHTNRVYSLQF--DGIHVVS  294 (445)
T ss_dssp             ESSSCCE----EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC--CCSSCEEEEEE--CSSEEEE
T ss_pred             ECCCCcE----EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec--CCCCceEEEEE--CCCEEEE
Confidence            9988664    5566789999999998  78899999999999999999998877665  45567999988  8899999


Q ss_pred             eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          162 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      ++.||.|++||+++++.+..+.+|...+.++.++  +.++++++  +.+++||++...
T Consensus       295 ~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~  350 (445)
T 2ovr_B          295 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQ  350 (445)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC
T ss_pred             EeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCc
Confidence            9999999999999999999999999999888774  56888887  889999997654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=3.2e-30  Score=195.08  Aligned_cols=171  Identities=16%  Similarity=0.127  Sum_probs=138.3

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee--eccCC--ceEEEcCCCCEEEEEecCC-
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRGR--PTVAFDQQGLVFAVAMEAG-   76 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~--~~~~~~~~~~~l~~~~~dg-   76 (235)
                      ++++.+..++ |...|.+++|+|+|++|++++.+ .+++|+..+++.....  ..+..  ..++|+|++..+++++.++ 
T Consensus       165 ~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~  242 (365)
T 4h5i_A          165 SDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG  242 (365)
T ss_dssp             TTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred             CCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence            3455555664 77889999999999999999865 5667776666654433  23332  3489999999999999887 


Q ss_pred             ---eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679           77 ---AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT  153 (235)
Q Consensus        77 ---~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~  153 (235)
                         .+++|++............+..|...|++++|+|+|++|++|+.|+.|++||+++++.+..+ ...|...|++++|+
T Consensus       243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~-~~gH~~~V~~v~fS  321 (365)
T 4h5i_A          243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF-KQAHSFAITEVTIS  321 (365)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE-TTSSSSCEEEEEEC
T ss_pred             ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe-cCcccCCEEEEEEC
Confidence               68889987765433344567788999999999999999999999999999999999887654 34577889999999


Q ss_pred             CCCcEEEEeCCCCcEEEEEcCC
Q 026679          154 PDGQYVVSGSGDGTLHAWNINT  175 (235)
Q Consensus       154 ~~~~~l~~~~~dg~i~v~d~~~  175 (235)
                      |||++|++|+.|++|+|||+..
T Consensus       322 pdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          322 PDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCCEEEEEeCCCeEEEEEcCC
Confidence            9999999999999999999964

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=3.2e-28  Score=185.58  Aligned_cols=206  Identities=15%  Similarity=0.164  Sum_probs=167.6

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCee-EEEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEe-cCCeE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAM-EAGAI   78 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~-~dg~v   78 (235)
                      ++++++..+.+|. .+.+++|+|+++++ ++++.|+.|++||+.+++....+..+... .++|+|+++.+++++ .++.|
T Consensus        20 ~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v   98 (391)
T 1l0q_A           20 TSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTL   98 (391)
T ss_dssp             TTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEE
Confidence            4567777777775 48999999999876 67779999999999999988888766633 499999999876554 67999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeE-EEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      ++||+.+++.    ..... +...+.+++|+|+++.+ ++++.++.|++||+.+++....+..+   ..+..++|+|+++
T Consensus        99 ~v~d~~~~~~----~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~dg~  170 (391)
T 1l0q_A           99 SVIDTTSNTV----AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG---RSPKGIAVTPDGT  170 (391)
T ss_dssp             EEEETTTTEE----EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC---SSEEEEEECTTSS
T ss_pred             EEEECCCCeE----EEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC---CCcceEEECCCCC
Confidence            9999987653    22222 34578999999999977 67788999999999999887766543   3468999999998


Q ss_pred             EE-EEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCC
Q 026679          158 YV-VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSS  217 (235)
Q Consensus       158 ~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~  217 (235)
                      +| ++++.++.|++||+++++.+..+. +...+.+++|+|+++++++++     +.+++||+++.+
T Consensus       171 ~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          171 KVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence            87 677889999999999998887776 456889999999999888774     679999997653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=4.2e-29  Score=186.90  Aligned_cols=178  Identities=15%  Similarity=0.229  Sum_probs=144.5

Q ss_pred             hhhhhhcccccceeEEEeec--CCCeeEEEeccceEEEEecCcc---------eeeeeeeccCCce--EEEcCC--CCEE
Q 026679            5 RILRYFKGHKERVISLCMSP--VNDSFMSGSLDHSVRIWDLRVN---------ACQGILRLRGRPT--VAFDQQ--GLVF   69 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~---------~~~~~~~~~~~~~--~~~~~~--~~~l   69 (235)
                      +++..+.+|...|++++|+|  ++++|++++.||.|++||++++         +....+..+...+  ++|+|+  +.++
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            35667789999999999999  5899999999999999999876         4466666665544  999999  9999


Q ss_pred             EEEecCCeEEEEeccCCCCCCc--------------------------------------------------------ee
Q 026679           70 AVAMEAGAIKLFDSRSYDKGPF--------------------------------------------------------DT   93 (235)
Q Consensus        70 ~~~~~dg~v~i~d~~~~~~~~~--------------------------------------------------------~~   93 (235)
                      ++++.||.|++||+++.+....                                                        ..
T Consensus       128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  207 (351)
T 3f3f_A          128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA  207 (351)
T ss_dssp             EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence            9999999999999876542111                                                        13


Q ss_pred             EeecCCCcceeEEEEccCC----CeEEEecCCCcEEEEEcCCCce-----------------------------------
Q 026679           94 FLVGGDTAEVCDIKFSNDG----KSMLLTTTNNNIYVLDAYGGEK-----------------------------------  134 (235)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~~d~~~~~~-----------------------------------  134 (235)
                      ..+.+|...|.+++|+|++    ++|++++.||.|++||++.+..                                   
T Consensus       208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
T 3f3f_A          208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK  287 (351)
T ss_dssp             EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred             eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence            3445688899999999998    7899999999999999986511                                   


Q ss_pred             ---------eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee
Q 026679          135 ---------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW  182 (235)
Q Consensus       135 ---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  182 (235)
                               ........|...|++++|+|++++|++++.||.|++||+.+++....+
T Consensus       288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                     122234456678999999999999999999999999999987655443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=9.3e-30  Score=194.37  Aligned_cols=202  Identities=10%  Similarity=0.031  Sum_probs=134.6

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeee-----eeeccCCce--EEEcC--------CCCEEEEEecCCeE
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG-----ILRLRGRPT--VAFDQ--------QGLVFAVAMEAGAI   78 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-----~~~~~~~~~--~~~~~--------~~~~l~~~~~dg~v   78 (235)
                      ...+....+.+++.+|++++.|++|++||.++++...     .+.+|...+  ++|+|        ++++|++++.|++|
T Consensus        89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv  168 (393)
T 4gq1_A           89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL  168 (393)
T ss_dssp             --------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred             CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence            3334444455566789999999999999998876433     345566544  89987        78999999999999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeeeec------------------
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFS------------------  139 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~------------------  139 (235)
                      ++||+++...    ......|...+.+++|+|++ .+|++++.|+.|++||+++++......                  
T Consensus       169 ~~Wd~~~~~~----~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          169 IIWRLTDEGP----ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             EEEEEETTEE----EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             EEEECCCCce----eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            9999987553    55566788999999999987 479999999999999998876433211                  


Q ss_pred             -----cCCCCCcceeeEEe-CCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEe------------------e
Q 026679          140 -----LEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW------------------A  195 (235)
Q Consensus       140 -----~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~------------------~  195 (235)
                           ...+...+.++.|+ |+++.|++++.|+.+++||+..++....+..|...+..+.+                  +
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH  324 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred             eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence                 12345668888887 79999999999999999999887766666555444433333                  3


Q ss_pred             c--CCCEEEEcc--cceEEeeCCCCCCC
Q 026679          196 P--RRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       196 ~--~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      |  ++.++++++  +.|++||+......
T Consensus       325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~  352 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGLIQLINTYEKDSN  352 (393)
T ss_dssp             SSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred             cCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence            2  334566665  78999999876544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=6e-29  Score=187.47  Aligned_cols=208  Identities=11%  Similarity=0.106  Sum_probs=157.6

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcc-eeeeeeeccCCceEEEcCCCCEEEE--EecCCeE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN-ACQGILRLRGRPTVAFDQQGLVFAV--AMEAGAI   78 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~v   78 (235)
                      .+++.+..+. |..+|.+++|+++.  ++.+ .|+.|++||+.++ +.+..+.. ....+++++  ..+++  |+.+|.|
T Consensus        89 ~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~--~~la~~sg~~~g~v  161 (355)
T 3vu4_A           89 VKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFSN--GLLVYSNEFNLGQI  161 (355)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEET--TEEEEEESSCTTCE
T ss_pred             CCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEEc--cEEEEeCCCcCcEE
Confidence            3566666665 56789999998753  4443 4789999999988 66666655 333477777  56665  5789999


Q ss_pred             EEEeccCCCCC------C-----ce-eEeecCCCcceeEEEEccCCCeEEEecCCCc-EEEEEcCCCceeeeeccCCCCC
Q 026679           79 KLFDSRSYDKG------P-----FD-TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-IYVLDAYGGEKRCGFSLEPSPN  145 (235)
Q Consensus        79 ~i~d~~~~~~~------~-----~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~  145 (235)
                      ++||+.+....      .     .. ...+.+|...|.+++|+|++++|++++.|++ |++||+++++.+..+....|..
T Consensus       162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~  241 (355)
T 3vu4_A          162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA  241 (355)
T ss_dssp             EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred             EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence            99999875410      0     01 3556789999999999999999999999998 9999999999888776333667


Q ss_pred             cceeeEEeCCCcEEEEeCCCCcEEEEEcCCCcee--eeec---------------------CCCcceeEEEeecCCCEEE
Q 026679          146 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV--ACWN---------------------GNIGVVACLKWAPRRAMFV  202 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~---------------------~~~~~v~~~~~~~~~~~l~  202 (235)
                      .|.+++|+|++++|++++.|+.|++||++.+...  ..+.                     ....+...++|+|++.+|+
T Consensus       242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~  321 (355)
T 3vu4_A          242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVV  321 (355)
T ss_dssp             CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEE
Confidence            8999999999999999999999999999765321  1110                     1122347799999999999


Q ss_pred             Ecc--cceEEeeCCCC
Q 026679          203 AAS--SVLSFWIPNPS  216 (235)
Q Consensus       203 ~~~--~~i~iw~~~~~  216 (235)
                      +++  |.+++|++...
T Consensus       322 ~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          322 VWPHTRMIETFKVVFD  337 (355)
T ss_dssp             EETTTTEEEEEEEEEE
T ss_pred             EEeCCCeEEEEEEEcC
Confidence            987  78999988643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=6.1e-29  Score=181.94  Aligned_cols=167  Identities=10%  Similarity=0.161  Sum_probs=125.0

Q ss_pred             hhhhhhhhcccccceeEEEeec---CCCeeEEEeccceEEEEecCcceeeeeeeccCC-----ceEEEcCCCCEE-----
Q 026679            3 DNRILRYFKGHKERVISLCMSP---VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-----PTVAFDQQGLVF-----   69 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~l-----   69 (235)
                      +|+.+..+.+|...++.++|+|   ++.+|++++.|++|+|||++++++++++..+..     ..++|+|++.++     
T Consensus       167 dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~  246 (356)
T 2w18_A          167 DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH  246 (356)
T ss_dssp             TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred             CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence            4566666777888888888888   668899999999999999999999999976542     236899999876     


Q ss_pred             -------EEEecCCeEEEEeccCCCCCCceeEe-ecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccC
Q 026679           70 -------AVAMEAGAIKLFDSRSYDKGPFDTFL-VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE  141 (235)
Q Consensus        70 -------~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  141 (235)
                             ++|+.|+++++||..+++........ ..+|...+.+..+  ++..+++++.|++|++||+.+++.+..+.. 
T Consensus       247 ~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~g-  323 (356)
T 2w18_A          247 PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPP-  323 (356)
T ss_dssp             -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECC-
T ss_pred             CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecC-
Confidence                   56778999999999876531110101 1345444443333  377899999999999999999998887654 


Q ss_pred             CCCCc-ceeeEEeCCCcEEEEeCCCCcEEEEEc
Q 026679          142 PSPNT-NTEATFTPDGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus       142 ~~~~~-i~~~~~~~~~~~l~~~~~dg~i~v~d~  173 (235)
                       |... +..++|+|+|++|++|+.|++|+|||+
T Consensus       324 -H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          324 -VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             -CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence             3333 445899999999999999999999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.1e-27  Score=182.57  Aligned_cols=206  Identities=13%  Similarity=0.109  Sum_probs=165.9

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeE-EEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEE-EEEecCCeE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVF-AVAMEAGAI   78 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l-~~~~~dg~v   78 (235)
                      .+++++..+..|. .+.+++|+|++++|+ +++.|+.|++||+.+++....+..+... .++|+|+++.+ ++++.++.|
T Consensus        62 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v  140 (391)
T 1l0q_A           62 ATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV  140 (391)
T ss_dssp             TTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence            4566666776665 899999999999775 5556799999999999988887766543 49999999977 677789999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeE-EEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      ++||+.+++.    ...+.. ...+.+++|+|+++.+ ++++.++.|++||+++++....+..   ...+.+++|+|+++
T Consensus       141 ~~~d~~~~~~----~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~  212 (391)
T 1l0q_A          141 SVINTVTKAV----INTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGT  212 (391)
T ss_dssp             EEEETTTTEE----EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSS
T ss_pred             EEEECCCCcE----EEEEec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCccceEECCCCC
Confidence            9999987653    333333 3457899999999887 5677899999999999887766553   24588999999999


Q ss_pred             EEEEeC---CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEE-Ecc--cceEEeeCCCCC
Q 026679          158 YVVSGS---GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFV-AAS--SVLSFWIPNPSS  217 (235)
Q Consensus       158 ~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~--~~i~iw~~~~~~  217 (235)
                      +|++++   .++.|++||+++++.+..+..+. .+.+++|+|++++++ +++  +.+++||+++.+
T Consensus       213 ~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          213 KAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             EEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence            998887   68999999999999888887664 578999999999884 444  779999998654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.2e-27  Score=183.89  Aligned_cols=209  Identities=15%  Similarity=0.196  Sum_probs=161.8

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccc---eEEEEecCcceeeeeeeccC-CceEEEcCCCCEEE-EEecCC--
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDH---SVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFA-VAMEAG--   76 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~dg--   76 (235)
                      +...+.+.+|...|.+++|+|+|+.|++++.|+   .|++||+.+++......... ...++|+|+|+.|+ +++.++  
T Consensus       168 g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~  247 (415)
T 2hqs_A          168 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSL  247 (415)
T ss_dssp             SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence            344567778999999999999999999999885   99999999887764333222 23499999999887 555555  


Q ss_pred             eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CC--cEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679           77 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT  153 (235)
Q Consensus        77 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~  153 (235)
                      .|++||+.+++     ...+..+...+.+++|+|||+.|++++. ++  .|++||+.+++... +.  .+...+..++|+
T Consensus       248 ~i~~~d~~~~~-----~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~--~~~~~~~~~~~s  319 (415)
T 2hqs_A          248 NLYVMDLASGQ-----IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT--WEGSQNQDADVS  319 (415)
T ss_dssp             EEEEEETTTCC-----EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC--CSSSEEEEEEEC
T ss_pred             eEEEEECCCCC-----EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-Ee--cCCCcccCeEEC
Confidence            48999998754     3455567788999999999999988876 44  68888988876432 22  234568899999


Q ss_pred             CCCcEEEEeCCC---CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--c---ceEEeeCCCCCCCCCC
Q 026679          154 PDGQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S---VLSFWIPNPSSNSTDE  222 (235)
Q Consensus       154 ~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~---~i~iw~~~~~~~~~~~  222 (235)
                      |+|++|++++.+   ..|++||+.+++.. .+..+. .+.+++|+|+|++|++++  +   .+++|++++.....+.
T Consensus       320 pdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~  394 (415)
T 2hqs_A          320 SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  394 (415)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred             CCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence            999999888764   58999999888764 455454 899999999999998886  3   6999998876655544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1e-27  Score=185.07  Aligned_cols=205  Identities=13%  Similarity=0.146  Sum_probs=166.9

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeE-EEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEe------
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAM------   73 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~------   73 (235)
                      ++++.+..+..|...+.+++|+|+++.++ +++.|+.|++||+++++....+..+... .++|+|+++.+++++      
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  278 (433)
T 3bws_A          199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ  278 (433)
T ss_dssp             TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred             CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc
Confidence            34566777888999999999999998875 5558999999999999888777665433 399999999999888      


Q ss_pred             --cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeE-EEecCCCcEEEEEcCCCceeeeeccCCCCCcceee
Q 026679           74 --EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA  150 (235)
Q Consensus        74 --~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~  150 (235)
                        .||.|++||+.+++.     .....+...+.+++|+|+++.+ ++++.++.|++||+.+++....+..   ...+.++
T Consensus       279 ~~~dg~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~~~  350 (433)
T 3bws_A          279 ESGGGRLGIYSMDKEKL-----IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV---FDKPNTI  350 (433)
T ss_dssp             CSCCEEEEEEETTTTEE-----EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEE
T ss_pred             ccCCCeEEEEECCCCcE-----EeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC---CCCCCeE
Confidence              488999999987542     2223445678899999999755 5568899999999999887766652   3558899


Q ss_pred             EEeCCCcEEEEeCC---------------CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEee
Q 026679          151 TFTPDGQYVVSGSG---------------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWI  212 (235)
Q Consensus       151 ~~~~~~~~l~~~~~---------------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~  212 (235)
                      +|+|++++|++++.               ||.|++||+.+++.+..+.. ...+.+++|+|++++|++++   +.+++|+
T Consensus       351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYR  429 (433)
T ss_dssp             EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence            99999998888766               57999999999998888875 45789999999999988764   7799999


Q ss_pred             CCC
Q 026679          213 PNP  215 (235)
Q Consensus       213 ~~~  215 (235)
                      ++.
T Consensus       430 ~~~  432 (433)
T 3bws_A          430 RDG  432 (433)
T ss_dssp             ETT
T ss_pred             ecC
Confidence            863

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.6e-27  Score=184.00  Aligned_cols=200  Identities=11%  Similarity=0.126  Sum_probs=165.1

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEe-cCCeEEEEeccC
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAM-EAGAIKLFDSRS   85 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~-~dg~v~i~d~~~   85 (235)
                      .+.+|.+.|.+++|+|++.++++++.|+.|++||+++++....+..+...  .++|+|+++.+++++ .++.|++||+++
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  243 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT  243 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence            56789999999999999999999999999999999999888888766543  399999999886554 799999999987


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEec--------CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      ++.    .... .....+.+++|+|+++.+++++        .|+.|++||+++++.......   ...+.+++|+|+++
T Consensus       244 ~~~----~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~  315 (433)
T 3bws_A          244 KLE----IRKT-DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP---PGNKRHIVSGNTEN  315 (433)
T ss_dssp             TEE----EEEC-CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE---EECEEEEEECSSTT
T ss_pred             CcE----EEEe-cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC---CCCcceEEECCCCC
Confidence            543    2222 3345689999999999999888        488999999999887665532   23578899999997


Q ss_pred             EE-EEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEccc-----------------ceEEeeCCCCC
Q 026679          158 YV-VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS-----------------VLSFWIPNPSS  217 (235)
Q Consensus       158 ~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------~i~iw~~~~~~  217 (235)
                      .+ ++++.++.|++||+.+++.+..+. +...+.+++|+|+++++++++.                 .+++||+.+.+
T Consensus       316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          316 KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             EEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence            55 666899999999999998887776 6678999999999998888762                 79999997654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=1.1e-26  Score=172.09  Aligned_cols=199  Identities=18%  Similarity=0.332  Sum_probs=156.2

Q ss_pred             eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC----CceEEEcCCCCEEEEEecCCeEEEEeccCCCCC---
Q 026679           17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG----RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG---   89 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~---   89 (235)
                      .++|+||+++ +||+| .|++|+|||+.+++.+..+..+.    +.+++|+|++++|++|+.||.|++||+++++..   
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            5779999875 66665 59999999999999888876543    234999999999999999999999998864320   


Q ss_pred             ----------------------------------CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCcee
Q 026679           90 ----------------------------------PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR  135 (235)
Q Consensus        90 ----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  135 (235)
                                                        ......+.+|...+..+.+.++++++++++.|+.|++||+++++..
T Consensus       106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  185 (318)
T 4ggc_A          106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG  185 (318)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred             cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence                                              1112234467788899999999999999999999999999876543


Q ss_pred             e--eeccCCCCCcceeeEEeCCCcEE---EEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc----c
Q 026679          136 C--GFSLEPSPNTNTEATFTPDGQYV---VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS----S  206 (235)
Q Consensus       136 ~--~~~~~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~  206 (235)
                      .  ......+...+..+.++|++..+   ++++.++.|++||.+......... +...+..+.|+|++..+++++    +
T Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~  264 (318)
T 4ggc_A          186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQN  264 (318)
T ss_dssp             SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTC
T ss_pred             ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCC
Confidence            2  22334455779999999976533   467889999999998887766654 667899999999999887653    6


Q ss_pred             ceEEeeCCCCCC
Q 026679          207 VLSFWIPNPSSN  218 (235)
Q Consensus       207 ~i~iw~~~~~~~  218 (235)
                      .|++||+++.+.
T Consensus       265 ~i~iwd~~~~~~  276 (318)
T 4ggc_A          265 QLVIWKYPTMAK  276 (318)
T ss_dssp             CEEEEETTTCCE
T ss_pred             EEEEEECCCCcE
Confidence            799999986654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=1.1e-26  Score=178.89  Aligned_cols=193  Identities=17%  Similarity=0.314  Sum_probs=156.3

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC----CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG----RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~   91 (235)
                      .++.|+|+++ +.|++| .|++|+|||..+++....+..+.    +.+++|+|+|++|++|+.||.|++||+++++.   
T Consensus       107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~---  181 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR---  181 (420)
T ss_dssp             TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---
T ss_pred             cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE---
Confidence            3567999975 567666 59999999999999888776543    34599999999999999999999999988664   


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW  171 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  171 (235)
                       .....+|...+.+++++  +..|++++.|+.+++||.+...... ..+..|...+..+.++|+++++++++.|+.+++|
T Consensus       182 -~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~-~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~  257 (420)
T 4gga_A          182 -LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHV-ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW  257 (420)
T ss_dssp             -EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             -EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceee-EEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence             66778899999887764  6789999999999999988754332 2334566779999999999999999999999999


Q ss_pred             EcCCCce----eeeecCCCcceeEEEeecCCC-EEEEcc----cceEEeeCCCCC
Q 026679          172 NINTRNE----VACWNGNIGVVACLKWAPRRA-MFVAAS----SVLSFWIPNPSS  217 (235)
Q Consensus       172 d~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~----~~i~iw~~~~~~  217 (235)
                      +..+++.    +.....|...|.+++|+|++. ++++++    +.|++||+.+..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~  312 (420)
T 4gga_A          258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA  312 (420)
T ss_dssp             ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE
T ss_pred             eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc
Confidence            9987653    455677889999999999665 444432    679999997654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1.6e-25  Score=172.01  Aligned_cols=209  Identities=17%  Similarity=0.110  Sum_probs=157.1

Q ss_pred             hhhhh--hhhcccccceeEEEeecC--------------CCeeEEEecc------ceEEEEecCcceeeeeeeccCCc--
Q 026679            3 DNRIL--RYFKGHKERVISLCMSPV--------------NDSFMSGSLD------HSVRIWDLRVNACQGILRLRGRP--   58 (235)
Q Consensus         3 ~~~~~--~~~~~h~~~v~~~~~~~~--------------~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~--   58 (235)
                      +++.+  ..+.+|...+..+++++.              +..++.++.+      +.|++||++. .....+..+...  
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~  182 (415)
T 2hqs_A          104 PGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLM  182 (415)
T ss_dssp             TTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEE
T ss_pred             CCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcce
Confidence            45544  447788888887777651              5566666654      7999999974 444555555443  


Q ss_pred             eEEEcCCCCEEEEEecCC---eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEE-EecCCCc--EEEEEcCCC
Q 026679           59 TVAFDQQGLVFAVAMEAG---AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML-LTTTNNN--IYVLDAYGG  132 (235)
Q Consensus        59 ~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~~~d~~~~  132 (235)
                      .++|+|+|+.|++++.++   .|++||+.+++.     ..+..+...+.+++|+|||+.|+ +++.++.  |++||+.++
T Consensus       183 ~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-----~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~  257 (415)
T 2hqs_A          183 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-----RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG  257 (415)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-----EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence            499999999999999875   999999987653     34556777899999999999888 5555554  999999887


Q ss_pred             ceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CC--cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc----
Q 026679          133 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS----  205 (235)
Q Consensus       133 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----  205 (235)
                      +..   .+..+...+.+++|+|+|++|++++. ++  .|++||+.+++. ..+..+...+.+++|+|+|++|++++    
T Consensus       258 ~~~---~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g  333 (415)
T 2hqs_A          258 QIR---QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGG  333 (415)
T ss_dssp             CEE---ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             CEE---eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCC
Confidence            753   23345567899999999999988776 44  688889887764 34555677899999999999998886    


Q ss_pred             -cceEEeeCCCCCCCCC
Q 026679          206 -SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       206 -~~i~iw~~~~~~~~~~  221 (235)
                       ..+++|++++.....+
T Consensus       334 ~~~i~~~d~~~~~~~~l  350 (415)
T 2hqs_A          334 QQHIAKQDLATGGVQVL  350 (415)
T ss_dssp             CEEEEEEETTTCCEEEC
T ss_pred             ceEEEEEECCCCCEEEe
Confidence             2699999987665443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=5.7e-26  Score=175.23  Aligned_cols=200  Identities=18%  Similarity=0.222  Sum_probs=150.9

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCccee----------e------eeeecc-CCceEEEcCCCCEEE----E
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC----------Q------GILRLR-GRPTVAFDQQGLVFA----V   71 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~----------~------~~~~~~-~~~~~~~~~~~~~l~----~   71 (235)
                      +...++.+++++++.++++++.|+ +++|+......          .      ..+... ....++|+|++++|+    +
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            344688999999999999999888 88987532110          0      111111 134499999999999    6


Q ss_pred             EecCCeEEEEeccCC-----CC-CCc-eeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCC
Q 026679           72 AMEAGAIKLFDSRSY-----DK-GPF-DTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS  143 (235)
Q Consensus        72 ~~~dg~v~i~d~~~~-----~~-~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  143 (235)
                      ++.|+.|++||+.+.     +. .+. ......+|...|.+++|+|+ +.+|++++.||.|++||++++......  ..|
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~--~~~  191 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT--LPS  191 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE--ECG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec--cCC
Confidence            788999999998764     11 111 12345568899999999997 788999999999999999988654333  234


Q ss_pred             CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC-------CcceeEEEeecCCCEEEEcc-c--------c
Q 026679          144 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-------IGVVACLKWAPRRAMFVAAS-S--------V  207 (235)
Q Consensus       144 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~-~--------~  207 (235)
                      ...+.+++|+|+|++|++|+.||.|++||.+ ++....+..|       ...|.+++|++++.++++.+ +        .
T Consensus       192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~  270 (434)
T 2oit_A          192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD  270 (434)
T ss_dssp             GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred             CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence            5679999999999999999999999999998 5555544433       34899999999998886654 2        2


Q ss_pred             eEEeeCCCC
Q 026679          208 LSFWIPNPS  216 (235)
Q Consensus       208 i~iw~~~~~  216 (235)
                      +++|++...
T Consensus       271 v~i~~l~~~  279 (434)
T 2oit_A          271 VVMALLPKK  279 (434)
T ss_dssp             EEEEECCCT
T ss_pred             eEEEEeccC
Confidence            899999754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=1.1e-24  Score=159.41  Aligned_cols=202  Identities=14%  Similarity=0.113  Sum_probs=152.3

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCc-ceeeeeeeccC---CceEEEcCCCCEEEEEe--cCCeEEEEe
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-NACQGILRLRG---RPTVAFDQQGLVFAVAM--EAGAIKLFD   82 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~---~~~~~~~~~~~~l~~~~--~dg~v~i~d   82 (235)
                      .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+.   ...++|+|+++.+++++  .++...+|.
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~  114 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL  114 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence            4566889999999999999999886 78999999998 77766665543   23499999999999998  445666666


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEE-EecCCCcEEEEEcC--CCceeeeeccCCCCCcceeeEEeCCCcEE
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML-LTTTNNNIYVLDAY--GGEKRCGFSLEPSPNTNTEATFTPDGQYV  159 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  159 (235)
                      +......   ...+. ....+..++|+|+++.|+ ++..++.+.+|++.  +++..   ....+...+.+++|+|++++|
T Consensus       115 ~~~~~~~---~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l  187 (297)
T 2ojh_A          115 LPSTGGT---PRLMT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET---RLTHGEGRNDGPDYSPDGRWI  187 (297)
T ss_dssp             EETTCCC---CEECC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCSSSCEEEEEECTTSSEE
T ss_pred             EECCCCc---eEEee-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce---EcccCCCccccceECCCCCEE
Confidence            5432221   12222 223488899999999887 67788988898863  33332   233444668999999999988


Q ss_pred             EEeC-CCCcEEEEEcC-CCceeeeecCCCcceeEEEeecCCCEEEEccc-------------ceEEeeCCCCCC
Q 026679          160 VSGS-GDGTLHAWNIN-TRNEVACWNGNIGVVACLKWAPRRAMFVAASS-------------VLSFWIPNPSSN  218 (235)
Q Consensus       160 ~~~~-~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------~i~iw~~~~~~~  218 (235)
                      ++++ .++.+++|++. .+..+..+..|...+..++|+|++++|++++.             .+.+|++++.+.
T Consensus       188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          188 YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            7665 58899999986 56667777778888999999999999988762             399999987654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.94  E-value=5.1e-25  Score=166.10  Aligned_cols=133  Identities=14%  Similarity=0.159  Sum_probs=109.4

Q ss_pred             EecCcceeeeeeeccCCce--EEEcCC---CCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeE
Q 026679           41 WDLRVNACQGILRLRGRPT--VAFDQQ---GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM  115 (235)
Q Consensus        41 wd~~~~~~~~~~~~~~~~~--~~~~~~---~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  115 (235)
                      |+....+.+..+..|...+  ++|+|+   +++|++++.||.|++||+.+...  .....+..|...|.+++|+|++++|
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l  101 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--TIPKAQQMHTGPVLDVCWSDDGSKV  101 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--EEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--eeEEEeccccCCEEEEEECcCCCEE
Confidence            3445556666777776554  999998   69999999999999999987332  1225566799999999999999999


Q ss_pred             EEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEE--eCCCcEEEEeCCCCcEEEEEcCCCce
Q 026679          116 LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF--TPDGQYVVSGSGDGTLHAWNINTRNE  178 (235)
Q Consensus       116 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~v~d~~~~~~  178 (235)
                      ++++.|+.|++||+.+++.....   .|...|.+++|  +|++++|++++.||.|++||+++++.
T Consensus       102 ~s~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSSNQAIQIA---QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEE---ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred             EEEcCCCcEEEEEcCCCCceeec---cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence            99999999999999998876533   35577999999  89999999999999999999876643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=6.7e-24  Score=167.87  Aligned_cols=216  Identities=12%  Similarity=0.156  Sum_probs=162.3

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEec--CcceeeeeeeccCCce-EEEcC----CCCEEEEEec
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDL--RVNACQGILRLRGRPT-VAFDQ----QGLVFAVAME   74 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~--~~~~~~~~~~~~~~~~-~~~~~----~~~~l~~~~~   74 (235)
                      .+++++..+..+.. +.+++|+|+|++|++++.|++|++||+  .+++.+..+.....+. ++|+|    +|+++++++.
T Consensus       167 ~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          167 DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEc
Confidence            45667777773333 889999999999999999999999999  7888888887554433 99999    9999998884


Q ss_pred             -CCeEEEEeccCCCCCCce-------------------eEe--------------------------------ecCCCcc
Q 026679           75 -AGAIKLFDSRSYDKGPFD-------------------TFL--------------------------------VGGDTAE  102 (235)
Q Consensus        75 -dg~v~i~d~~~~~~~~~~-------------------~~~--------------------------------~~~~~~~  102 (235)
                       +++|.+||..+.+.....                   ...                                ...+...
T Consensus       246 ~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~  325 (543)
T 1nir_A          246 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF  325 (543)
T ss_dssp             ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSS
T ss_pred             cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcC
Confidence             899999997664321000                   000                                0011123


Q ss_pred             eeEEEEccCCCeEEEec-CCCcEEEEEcCCCceeeeeccCC--CCCcceeeEEeCC-CcEEEEeC-CCCcEEEEEcCC--
Q 026679          103 VCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEP--SPNTNTEATFTPD-GQYVVSGS-GDGTLHAWNINT--  175 (235)
Q Consensus       103 v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~-~~~l~~~~-~dg~i~v~d~~~--  175 (235)
                      +..+.|+|+|+++++++ .+++|.+||..+++....+....  |.+....+ ++|+ +..++++. .|++|.+||+.+  
T Consensus       326 ~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~  404 (543)
T 1nir_A          326 LHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKN  404 (543)
T ss_dssp             CCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred             ccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCC
Confidence            44678999999876554 58899999999999887766432  33222222 4677 66667765 689999999988  


Q ss_pred             -----CceeeeecCCCcceeEEEeecCCCEEEEcc---------cceEEeeCCCCCCC
Q 026679          176 -----RNEVACWNGNIGVVACLKWAPRRAMFVAAS---------SVLSFWIPNPSSNS  219 (235)
Q Consensus       176 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~~i~iw~~~~~~~~  219 (235)
                           ++.+.++..|...+..++++|++++|.+++         +.|.+||+++.+..
T Consensus       405 ~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          405 HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             CTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             CchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence                 888999999988889999999999999974         47999999876644

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=8e-24  Score=157.80  Aligned_cols=213  Identities=9%  Similarity=0.055  Sum_probs=152.2

Q ss_pred             hhhh-hhhhcccccceeEEEeecCCCeeEEEeccc---eEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEE-ecCC
Q 026679            3 DNRI-LRYFKGHKERVISLCMSPVNDSFMSGSLDH---SVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVA-MEAG   76 (235)
Q Consensus         3 ~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~-~~dg   76 (235)
                      +++. ...+..+..+..+++|+|++++++++..++   .|.+||+.+++.+..+...... .++|+|+++.++++ ..++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  150 (331)
T 3u4y_A           71 LEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSA  150 (331)
T ss_dssp             SSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTT
T ss_pred             CCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCC
Confidence            3444 555666666666699999999998655553   8999999999888877765543 49999999865555 5557


Q ss_pred             e-EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcCCCce---eeeeccCCCCCcceeeE
Q 026679           77 A-IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEAT  151 (235)
Q Consensus        77 ~-v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~---~~~~~~~~~~~~i~~~~  151 (235)
                      . +.+|++......................++|+|+|++++++ ..++.|.+||+.+++.   +..+...   ..+..++
T Consensus       151 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~  227 (331)
T 3u4y_A          151 NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN---NLPGTIV  227 (331)
T ss_dssp             TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS---SCCCCEE
T ss_pred             ceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC---CCCceEE
Confidence            8 99999985432110101222334567899999999966555 4688999999998887   5555433   4467899


Q ss_pred             EeCCCcEEEEeC-CCCcEEEEEcCCCce--eeeecCC----Ccc---eeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679          152 FTPDGQYVVSGS-GDGTLHAWNINTRNE--VACWNGN----IGV---VACLKWAPRRAMFVAAS---SVLSFWIPNPSSN  218 (235)
Q Consensus       152 ~~~~~~~l~~~~-~dg~i~v~d~~~~~~--~~~~~~~----~~~---v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~  218 (235)
                      |+|+|++|++++ .++.|.+||+.+++.  +..+..+    ...   ...++|+|++++|++++   +.+.+|++.....
T Consensus       228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            999999776554 578899999998876  3333221    222   24589999999886654   6799999987554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=7.8e-24  Score=163.35  Aligned_cols=197  Identities=15%  Similarity=0.160  Sum_probs=141.4

Q ss_pred             cccceeEEEeecCCCeeE----EEeccceEEEEecCcc--------ee---eeeeeccCC--ceEEEcCC-CCEEEEEec
Q 026679           13 HKERVISLCMSPVNDSFM----SGSLDHSVRIWDLRVN--------AC---QGILRLRGR--PTVAFDQQ-GLVFAVAME   74 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~----s~~~d~~i~vwd~~~~--------~~---~~~~~~~~~--~~~~~~~~-~~~l~~~~~   74 (235)
                      |...|.+++|+|++++|+    +++.|+.|++||+.++        +.   ...+..|..  ..++|+|+ +.+|++++.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            456799999999999999    8899999999998765        22   233343443  34999997 899999999


Q ss_pred             CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC-----CCCccee
Q 026679           75 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP-----SPNTNTE  149 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~~~i~~  149 (235)
                      ||.|++||+++...    ......|...|.+++|+|+|++|++++.||.|++||++ ++....+..+.     +...+.+
T Consensus       171 Dg~v~iwD~~~~~~----~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~  245 (434)
T 2oit_A          171 DGSIAVLQVTETVK----VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLD  245 (434)
T ss_dssp             TSCEEEEEESSSEE----EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEE
T ss_pred             CCeEEEEEcCCCcc----eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEE
Confidence            99999999987632    34455678899999999999999999999999999998 55444443322     2237899


Q ss_pred             eEEeCCCcEEEEe-CCCC------cEEEEEcCCCce--e---eeec-------CCCcceeEEEeecCCCEEEEcc---cc
Q 026679          150 ATFTPDGQYVVSG-SGDG------TLHAWNINTRNE--V---ACWN-------GNIGVVACLKWAPRRAMFVAAS---SV  207 (235)
Q Consensus       150 ~~~~~~~~~l~~~-~~dg------~i~v~d~~~~~~--~---~~~~-------~~~~~v~~~~~~~~~~~l~~~~---~~  207 (235)
                      ++|++++.++++. ..+|      .+++|+++..+.  .   ..+.       +...+-..+.+.++.+++++++   ++
T Consensus       246 v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~d  325 (434)
T 2oit_A          246 VLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTE  325 (434)
T ss_dssp             EEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSB
T ss_pred             EEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCc
Confidence            9999998887543 3333      389999976421  1   1111       1122233344457878877775   55


Q ss_pred             eEEeeCC
Q 026679          208 LSFWIPN  214 (235)
Q Consensus       208 i~iw~~~  214 (235)
                      +.+....
T Consensus       326 v~vl~~~  332 (434)
T 2oit_A          326 VSILARQ  332 (434)
T ss_dssp             CEEEEEC
T ss_pred             eeEEEec
Confidence            6666543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=3e-23  Score=154.69  Aligned_cols=210  Identities=8%  Similarity=0.024  Sum_probs=152.9

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEec-cceEEEEecCccee-eeeeeccCC-ce-EEEcCCCCEEEEEecCC-
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNAC-QGILRLRGR-PT-VAFDQQGLVFAVAMEAG-   76 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~-~~~~~~~~~-~~-~~~~~~~~~l~~~~~dg-   76 (235)
                      ++++.+..+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..+.. .. ++|+|++++++++..++ 
T Consensus        28 ~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  106 (331)
T 3u4y_A           28 DTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNH  106 (331)
T ss_dssp             TTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSS
T ss_pred             cccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCC
Confidence            4566666666666677 9999999987666655 88999999998886 655555443 34 89999999999555553 


Q ss_pred             --eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CCCc-EEEEEcCCCceeeee--ccCCCCCcceee
Q 026679           77 --AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNN-IYVLDAYGGEKRCGF--SLEPSPNTNTEA  150 (235)
Q Consensus        77 --~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~-i~~~d~~~~~~~~~~--~~~~~~~~i~~~  150 (235)
                        .|.+||+.+.+.    ..... ......+++|+|+|+++++++ .++. |.+|++.....+...  ........+..+
T Consensus       107 ~~~i~v~d~~~~~~----~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~  181 (331)
T 3u4y_A          107 PFNMQSYSFLKNKF----ISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNI  181 (331)
T ss_dssp             SCEEEEEETTTTEE----EEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEE
T ss_pred             cccEEEEECCCCCe----EEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccce
Confidence              899999987653    22222 334568999999998766654 4578 999998764332111  101122347889


Q ss_pred             EEeCCCcEEE-EeCCCCcEEEEEcCCCce---eeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679          151 TFTPDGQYVV-SGSGDGTLHAWNINTRNE---VACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN  218 (235)
Q Consensus       151 ~~~~~~~~l~-~~~~dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~  218 (235)
                      +|+|+|++++ ++..++.|++||+.+++.   +..+.. ...+..++|+|+|+++++++   +.+.+||+++.+.
T Consensus       182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            9999999665 555689999999999888   777764 36778999999999776654   5699999987654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=2.1e-22  Score=151.26  Aligned_cols=199  Identities=8%  Similarity=0.049  Sum_probs=155.8

Q ss_pred             ccceeEEEeecCCCeeEEEec-------cceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEE-ecCCeEEEEecc
Q 026679           14 KERVISLCMSPVNDSFMSGSL-------DHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVA-MEAGAIKLFDSR   84 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~-~~dg~v~i~d~~   84 (235)
                      ...+..++|+|+++.+++++.       ++.|.+||..+++....+...... .++++|+++.++++ ..++.|.+||..
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            356788999999988887763       578999999999888888765443 49999999965555 557999999998


Q ss_pred             CCCCCCceeEeecCCC---------cceeEEEEccCCCeEEEec--CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe
Q 026679           85 SYDKGPFDTFLVGGDT---------AEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT  153 (235)
Q Consensus        85 ~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~  153 (235)
                      +++.    ......+.         ..+.+++|+|+++.+++++  .++.|.+||..+++....+....  ..+..++|+
T Consensus       120 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~s  193 (353)
T 3vgz_A          120 TGEV----KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG--KMSTGLALD  193 (353)
T ss_dssp             TCCE----EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC--TTCCCCEEE
T ss_pred             CCee----EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCC--CccceEEEC
Confidence            7653    22222221         1268899999999887776  47889999999998877665332  337789999


Q ss_pred             CCCcEEEEeCCCCcEEEEEcCCCceeeeecC----CCcceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679          154 PDGQYVVSGSGDGTLHAWNINTRNEVACWNG----NIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN  218 (235)
Q Consensus       154 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~  218 (235)
                      |++++|++++.++.|.+||..+++.+..+..    +...+.+++|+|+++++++++   +.+.+||..+.+.
T Consensus       194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI  265 (353)
T ss_dssp             TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            9999999999999999999999988877653    455678899999999877765   6799999976543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=5.2e-23  Score=153.49  Aligned_cols=206  Identities=9%  Similarity=0.094  Sum_probs=154.5

Q ss_pred             hhhhhhhhccccc--ceeEEEeecCCCee-EEEeccceEEEEecCcceeeeeeecc-------CCceEEEcCCCCEEEEE
Q 026679            3 DNRILRYFKGHKE--RVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILRLR-------GRPTVAFDQQGLVFAVA   72 (235)
Q Consensus         3 ~~~~~~~~~~h~~--~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~   72 (235)
                      +++.+..+.....  .+..++|+|+++.+ ++++.++.|.+||+.+++....+...       ....++|+|+++.++++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~   99 (337)
T 1pby_B           20 KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIY   99 (337)
T ss_dssp             TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEE
T ss_pred             CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEE
Confidence            4555555553222  47899999999765 55666889999999998887766643       34459999999998888


Q ss_pred             e------------cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc
Q 026679           73 M------------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL  140 (235)
Q Consensus        73 ~------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  140 (235)
                      .            .++.|.+||+.+.+.    ..... ....+..++|+|++++++++  ++.|.+||+.+++....+..
T Consensus       100 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~----~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~  172 (337)
T 1pby_B          100 ESPVRLELTHFEVQPTRVALYDAETLSR----RKAFE-APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPI  172 (337)
T ss_dssp             EEEEEECSSCEEECCCEEEEEETTTTEE----EEEEE-CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECS
T ss_pred             ecccccccccccccCceEEEEECCCCcE----EEEEe-CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeec
Confidence            6            579999999976542    22222 23457789999999988888  68899999988876544432


Q ss_pred             CC--C--------------------------------------------------------------CCcceeeEEeCCC
Q 026679          141 EP--S--------------------------------------------------------------PNTNTEATFTPDG  156 (235)
Q Consensus       141 ~~--~--------------------------------------------------------------~~~i~~~~~~~~~  156 (235)
                      ..  .                                                              ...+..++|+|++
T Consensus       173 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg  252 (337)
T 1pby_B          173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK  252 (337)
T ss_dssp             TTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS
T ss_pred             cccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC
Confidence            21  0                                                              0123458999999


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      ++++++  ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++  +.+++||+++.+.
T Consensus       253 ~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          253 TRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             SEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             CEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence            999888  789999999999888777643 5678999999999888776  7799999977643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=2.8e-24  Score=175.87  Aligned_cols=200  Identities=14%  Similarity=0.111  Sum_probs=153.2

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-----CceEEEcCCCCEEEEEecC---------CeEEE
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-----RPTVAFDQQGLVFAVAMEA---------GAIKL   80 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~d---------g~v~i   80 (235)
                      ..+.+++|+|||+++++ +.||+|++||+.+++....+..+.     ...++|+|||+.|++++.+         +.+.+
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            35788999999997776 789999999999998887777665     3459999999999999764         78889


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC----------------
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP----------------  144 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----------------  144 (235)
                      ||+.+++.  ........+...+..++|+|||+.|++++. +.|++||+.+++...........                
T Consensus        96 ~d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~  172 (723)
T 1xfd_A           96 SKIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL  172 (723)
T ss_dssp             EESSSCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred             EECCCCce--EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEec
Confidence            99988663  111112234445888999999999998876 78999999888766544322211                


Q ss_pred             CcceeeEEeCCCcEEEEeCCCC----------------------------------cEEEEEcCCCceeeeecCC-----
Q 026679          145 NTNTEATFTPDGQYVVSGSGDG----------------------------------TLHAWNINTRNEVACWNGN-----  185 (235)
Q Consensus       145 ~~i~~~~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~~~~~~~~~~-----  185 (235)
                      ..+..++|+|||++|++++.++                                  .|++||+.+++....+..+     
T Consensus       173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~  252 (723)
T 1xfd_A          173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM  252 (723)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred             cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence            1237899999999999886543                                  7999999888765555543     


Q ss_pred             -CcceeEEEeecCCCEEEEcc------cceEEeeCCCCCC
Q 026679          186 -IGVVACLKWAPRRAMFVAAS------SVLSFWIPNPSSN  218 (235)
Q Consensus       186 -~~~v~~~~~~~~~~~l~~~~------~~i~iw~~~~~~~  218 (235)
                       ...+..++|+|||+++++..      ..+++||+.+++.
T Consensus       253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~  292 (723)
T 1xfd_A          253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC  292 (723)
T ss_dssp             SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred             ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence             56889999999999887653      4589999877653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=2.8e-23  Score=170.40  Aligned_cols=200  Identities=12%  Similarity=0.072  Sum_probs=154.3

Q ss_pred             ccceeEEEeecCCCeeEEEec-cc-----eEEEEecCcceeeeeeeccC--------------------------CceEE
Q 026679           14 KERVISLCMSPVNDSFMSGSL-DH-----SVRIWDLRVNACQGILRLRG--------------------------RPTVA   61 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~-d~-----~i~vwd~~~~~~~~~~~~~~--------------------------~~~~~   61 (235)
                      ...+.+++|+|||++|++++. |+     .|++||+.+++....+..+.                          ...++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457999999999999999998 88     89999999988776665432                          34489


Q ss_pred             EcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccC
Q 026679           62 FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE  141 (235)
Q Consensus        62 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  141 (235)
                      |+|||+.|++++. +.|.+||+.++....  ...+..+...+..++|+|||++|++++ ++.|++||+.+++........
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~--~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~  191 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAA--VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG  191 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTS--CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcce--EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence            9999999999887 999999998862000  223445667899999999999998887 468999999988765433322


Q ss_pred             CCC--------------CcceeeEEeCCCcEEEEeCCCC---------------------------------cEEEEEcC
Q 026679          142 PSP--------------NTNTEATFTPDGQYVVSGSGDG---------------------------------TLHAWNIN  174 (235)
Q Consensus       142 ~~~--------------~~i~~~~~~~~~~~l~~~~~dg---------------------------------~i~v~d~~  174 (235)
                      ...              ..+..++|+|||++|++++.|+                                 .|++||+.
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~  271 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA  271 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred             ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence            110              0147799999999999887665                                 78999998


Q ss_pred             C-Cceeeeec--CCCcceeEEEeecCCCEEEEcc-------cceEEeeCCCCCC
Q 026679          175 T-RNEVACWN--GNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSSN  218 (235)
Q Consensus       175 ~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~~  218 (235)
                      + ++......  .|...+..++| |||++|++++       ..+++||+.++..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~  324 (741)
T 2ecf_A          272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ  324 (741)
T ss_dssp             TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE
T ss_pred             CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce
Confidence            8 77654432  47778999999 9999998663       4589999877653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=6.2e-23  Score=154.14  Aligned_cols=208  Identities=9%  Similarity=0.090  Sum_probs=158.4

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeE-EEeccceEEEEecCcceeeeeeeccC-----------CceEEEcCCCCEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLRG-----------RPTVAFDQQGLVFA   70 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~   70 (235)
                      +++.+..+.. ...+..++|+|++++++ +...++.|.+||..+++....+..+.           ...++++|+++.++
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  156 (353)
T 3vgz_A           78 TLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVY  156 (353)
T ss_dssp             TCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEE
T ss_pred             CCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEE
Confidence            3444444443 24477899999998554 55567999999999998888777643           23389999999887


Q ss_pred             EEe--cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC--CCCc
Q 026679           71 VAM--EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP--SPNT  146 (235)
Q Consensus        71 ~~~--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~  146 (235)
                      ++.  .++.|.+||..+.+.    ......+...+..++|+|+++.+++++.++.|.+||+.+++....+....  +...
T Consensus       157 ~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  232 (353)
T 3vgz_A          157 ISGIGKESVIWVVDGGNIKL----KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHF  232 (353)
T ss_dssp             EEEESSSCEEEEEETTTTEE----EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCC
T ss_pred             EEecCCCceEEEEcCCCCce----EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcc
Confidence            776  478999999987653    33333344557889999999999999999999999999998877665422  2345


Q ss_pred             ceeeEEeCCCcEEEEeCC-CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCC
Q 026679          147 NTEATFTPDGQYVVSGSG-DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS  217 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~  217 (235)
                      +..++|+|+++++++++. ++.|.+||..+++.+..+....  ...++|+|+++++++++   +.+.+||..+.+
T Consensus       233 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          233 FINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             EEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence            778999999997766654 5899999999999887776443  36799999999665554   779999997654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1e-22  Score=152.26  Aligned_cols=204  Identities=10%  Similarity=0.060  Sum_probs=141.8

Q ss_pred             hhcccccceeEEEeecCCCeeEEEec-cceEEEEec---CcceeeeeeeccC-CceEEEcCCCCEEEEEe-cCCeEEEEe
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSL-DHSVRIWDL---RVNACQGILRLRG-RPTVAFDQQGLVFAVAM-EAGAIKLFD   82 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~---~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~dg~v~i~d   82 (235)
                      .+..+. .+.+++|+|++++|++++. ++.|.+||+   ...+....+.... ...++|+|+++.+++++ .++.|.+||
T Consensus        79 ~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  157 (343)
T 1ri6_A           79 ESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFT  157 (343)
T ss_dssp             EEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             ccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence            344333 7889999999998776654 889999999   4444555554443 33499999999888887 899999999


Q ss_pred             ccC-CCCCCcee-EeecCCCcceeEEEEccCCCeEEEec-CCCcEEEEEcCC--Cce--eeeec-cC---CCCCcceeeE
Q 026679           83 SRS-YDKGPFDT-FLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYG--GEK--RCGFS-LE---PSPNTNTEAT  151 (235)
Q Consensus        83 ~~~-~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~--~~~--~~~~~-~~---~~~~~i~~~~  151 (235)
                      +.+ ++...... .........+..++|+|+++++++++ .++.|.+||+..  ++.  ..... ..   .....+..++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  237 (343)
T 1ri6_A          158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  237 (343)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence            986 33211000 11222335788899999999776554 789999999954  332  11111 11   1123466799


Q ss_pred             EeCCCcEEE-EeCCCCcEEEEEcC----CCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCC
Q 026679          152 FTPDGQYVV-SGSGDGTLHAWNIN----TRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPN  214 (235)
Q Consensus       152 ~~~~~~~l~-~~~~dg~i~v~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~  214 (235)
                      |+|+|++|+ ++..++.|.+||+.    ..+.+..+..+.. +.+++|+|++++|++++   +.+.+|+++
T Consensus       238 ~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          238 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            999998887 55578999999998    2344445554444 89999999999887776   679999664

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=1.4e-22  Score=152.10  Aligned_cols=206  Identities=10%  Similarity=0.123  Sum_probs=142.0

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEe-ccceEEEEecCc-c--eeeeeeeccC-----------CceEEEcCCCCEEEEE
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGS-LDHSVRIWDLRV-N--ACQGILRLRG-----------RPTVAFDQQGLVFAVA   72 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~-~--~~~~~~~~~~-----------~~~~~~~~~~~~l~~~   72 (235)
                      ..+..|...+..++|+|+|++|++++ .++.|.+|++.. +  ..+..+....           ...++|+|+++++++.
T Consensus        79 ~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~  158 (347)
T 3hfq_A           79 NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVID  158 (347)
T ss_dssp             EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEE
T ss_pred             eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEe
Confidence            33445677889999999999888887 689999999963 2  2233332211           2238999999966666


Q ss_pred             ecCCeEEEEeccC-CCCCCceeEeecCCCcceeEEEEccCCCeEEE-ecCCCcEEEEEcCC--Cceeee--eccCCC---
Q 026679           73 MEAGAIKLFDSRS-YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TTTNNNIYVLDAYG--GEKRCG--FSLEPS---  143 (235)
Q Consensus        73 ~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~--~~~~~~--~~~~~~---  143 (235)
                      ..++.|.+|++.. +........ .......+..++|+|||+++++ ...++.|.+|++..  ++....  ......   
T Consensus       159 ~~~~~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  237 (347)
T 3hfq_A          159 LGSDKVYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT  237 (347)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred             CCCCEEEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence            6788999999983 221111111 1122335778999999996666 45688999999874  443222  211111   


Q ss_pred             -CCcceeeEEeCCCcEEE-EeCCCCcEEEEEcCC---CceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCC
Q 026679          144 -PNTNTEATFTPDGQYVV-SGSGDGTLHAWNINT---RNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPN  214 (235)
Q Consensus       144 -~~~i~~~~~~~~~~~l~-~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~  214 (235)
                       ...+..++|+|+|++|+ +...++.|.+|++..   .+.+..+..+...+..++|+|++++|++++   +.+.+|+++
T Consensus       238 ~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          238 AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence             13478899999999874 555689999999972   244555666666789999999999888775   669999554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=1.2e-22  Score=160.82  Aligned_cols=193  Identities=10%  Similarity=0.039  Sum_probs=154.0

Q ss_pred             EeecCCCeeEEEeccceEEEEecCcceeeeeeec-cCCceEEEcCCCCEEEEEecCCeEEEEec--cCCCCCCceeEeec
Q 026679           21 CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDS--RSYDKGPFDTFLVG   97 (235)
Q Consensus        21 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~v~i~d~--~~~~~~~~~~~~~~   97 (235)
                      .++|++..+++++.|++|.+||..+++.+..+.. +....++++|+++++++++.++.|.+||+  .+.+.    ...+.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~----~~~i~  219 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK----VAEIK  219 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE----EEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcE----EEEEe
Confidence            4889898999999999999999999999998884 34345889999999999999999999999  55432    22333


Q ss_pred             CCCcceeEEEEcc----CCCeEEEecC-CCcEEEEEcCCCceeeeeccCC--------C-CCcceeeEEeCCCc-EEEEe
Q 026679           98 GDTAEVCDIKFSN----DGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEP--------S-PNTNTEATFTPDGQ-YVVSG  162 (235)
Q Consensus        98 ~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~--------~-~~~i~~~~~~~~~~-~l~~~  162 (235)
                       +...+..++|+|    +|+++++++. +++|.+||..+++.+..+....        | ...+..+.++|++. ++++.
T Consensus       220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence             345679999999    9999998885 8999999999999888776532        1 12578899999765 45677


Q ss_pred             CCCCcEEEEEcCCCceee--eecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCCCC
Q 026679          163 SGDGTLHAWNINTRNEVA--CWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNS  219 (235)
Q Consensus       163 ~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~~  219 (235)
                      ..++.|.+||+.+.+.+.  .+. +...+..+.|+|+++++++++   +.|.+||.++.++.
T Consensus       299 ~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~  359 (543)
T 1nir_A          299 KETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS  359 (543)
T ss_dssp             TTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE
Confidence            889999999998876544  343 556788999999999877654   67999999876543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=1.5e-22  Score=151.80  Aligned_cols=208  Identities=12%  Similarity=0.105  Sum_probs=153.5

Q ss_pred             chhhhhhhhcccc-cceeEEEeecCCCee-EEEeccceEEEEecCcceeeeeeeccC--------CceEEEcCCCCEEEE
Q 026679            2 YDNRILRYFKGHK-ERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILRLRG--------RPTVAFDQQGLVFAV   71 (235)
Q Consensus         2 ~~~~~~~~~~~h~-~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~   71 (235)
                      .+++.++.+..+. ..+..++|+|+++.+ +++..++.|.+||+.+++....+....        ...++|+|+++.+++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  108 (349)
T 1jmx_B           29 ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA  108 (349)
T ss_dssp             TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEE
T ss_pred             CCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEE
Confidence            3455666665443 257899999999865 455678999999999998877776433        345999999999999


Q ss_pred             EecC------------CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec
Q 026679           72 AMEA------------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS  139 (235)
Q Consensus        72 ~~~d------------g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  139 (235)
                      ++.+            +.|.+||+.+++.... . ....+...+.+++|+|+|+ +++++.  .|.+||+.+++....+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~-~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~  183 (349)
T 1jmx_B          109 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP-V-RTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALP  183 (349)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEEGGGGGGBCC-S-EEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEEC
T ss_pred             EcccccccccccccCCCeEEEEECCCccccce-e-eeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceecccc
Confidence            8865            8999999987432111 1 1112334688899999999 666543  49999999888766554


Q ss_pred             cCCC------------------------------------------------------------------CCcceeeEEe
Q 026679          140 LEPS------------------------------------------------------------------PNTNTEATFT  153 (235)
Q Consensus       140 ~~~~------------------------------------------------------------------~~~i~~~~~~  153 (235)
                      ....                                                                  ...+..++|+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  263 (349)
T 1jmx_B          184 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS  263 (349)
T ss_dssp             STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred             ccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEec
Confidence            3310                                                                  0124466778


Q ss_pred             C-CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          154 P-DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       154 ~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      | ++++++++  ++.|.+||+.+++.+..+.. ...+.+++|+|++++|++++  +.+++||.++.+
T Consensus       264 p~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          264 PKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             SSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             CCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence            9 99999888  88999999999988777763 34578999999998887765  779999997654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=2.5e-22  Score=150.11  Aligned_cols=200  Identities=15%  Similarity=0.191  Sum_probs=141.6

Q ss_pred             ccccceeEEEeecCCCeeEEEecc-ceEEEEecC--cce--eeeeeeccC-CceEEEcCCCCEEEEEec-CCeEEEEecc
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLD-HSVRIWDLR--VNA--CQGILRLRG-RPTVAFDQQGLVFAVAME-AGAIKLFDSR   84 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d-~~i~vwd~~--~~~--~~~~~~~~~-~~~~~~~~~~~~l~~~~~-dg~v~i~d~~   84 (235)
                      .|...+.+++|+|++++|++++.+ +.|++|++.  +++  .+..+..+. ...++|+|+++.+++++. ++.|.+||+.
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            466788999999999988888876 999999997  444  333444333 344999999998877665 8899999995


Q ss_pred             CCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CCCcEEEEEcCC-Cceeee----eccCCCCCcceeeEEeCCCcE
Q 026679           85 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYG-GEKRCG----FSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~~----~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      .+..  ............+.+++|+|+++++++++ .++.|.+||+.+ ++....    .... ....+..++|+|++++
T Consensus       115 ~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pdg~~  191 (343)
T 1ri6_A          115 DGLP--VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV-EGAGPRHMVFHPNEQY  191 (343)
T ss_dssp             TTEE--EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS-TTCCEEEEEECTTSSE
T ss_pred             CCcc--ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccC-CCCCcceEEECCCCCE
Confidence            2211  11222223334688899999999888877 799999999987 544322    2222 2245788999999997


Q ss_pred             EEE-eCCCCcEEEEEcCC--Cce--eeeec----CC--CcceeEEEeecCCCEEEEcc---cceEEeeCC
Q 026679          159 VVS-GSGDGTLHAWNINT--RNE--VACWN----GN--IGVVACLKWAPRRAMFVAAS---SVLSFWIPN  214 (235)
Q Consensus       159 l~~-~~~dg~i~v~d~~~--~~~--~~~~~----~~--~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~  214 (235)
                      |++ +..++.|.+|++..  ++.  ...+.    ++  ...+..++|+|++++|+++.   +.+.+|+++
T Consensus       192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            755 45789999999953  332  22221    11  23566899999998887543   779999997

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=9.7e-23  Score=166.41  Aligned_cols=209  Identities=15%  Similarity=0.108  Sum_probs=152.9

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCc-----ceeeeeeeccCC----------------ceEEEcCCCC
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-----NACQGILRLRGR----------------PTVAFDQQGL   67 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-----~~~~~~~~~~~~----------------~~~~~~~~~~   67 (235)
                      .+..+...+.+++|+|||+.|+++ .|+.|++||+.+     ++.......+..                ..++|+|||+
T Consensus       115 ~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~  193 (706)
T 2z3z_A          115 YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS  193 (706)
T ss_dssp             EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS
T ss_pred             EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC
Confidence            344567788999999999999985 689999999988     766554433322                4599999999


Q ss_pred             EEEEEe---------------------------------cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCe
Q 026679           68 VFAVAM---------------------------------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS  114 (235)
Q Consensus        68 ~l~~~~---------------------------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  114 (235)
                      .|++++                                 .+..|.+||+.+++...  ......+...+.+++|+|||+.
T Consensus       194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~  271 (706)
T 2z3z_A          194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY--LQTGEPKEKFLTNLSWSPDENI  271 (706)
T ss_dssp             EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE--CCCCSCTTCEEEEEEECTTSSE
T ss_pred             EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe--eccCCCCceeEeeEEEECCCCE
Confidence            999987                                 34679999998754211  1111245677899999999999


Q ss_pred             EEEecCCC-----cEEEEEcCCCceeeeeccCCCC---CcceeeEEeC--CCcEEEEeCCCCcEEEEEcC-CCceeeeec
Q 026679          115 MLLTTTNN-----NIYVLDAYGGEKRCGFSLEPSP---NTNTEATFTP--DGQYVVSGSGDGTLHAWNIN-TRNEVACWN  183 (235)
Q Consensus       115 l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~--~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~  183 (235)
                      |++++.++     .|++||+.+++....+......   ..+..++|+|  +|+++++++.++.+++|++. ++..+..+.
T Consensus       272 l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~  351 (706)
T 2z3z_A          272 LYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT  351 (706)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred             EEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence            99887765     8999999988333222211111   2246789999  99999999999999999886 677777777


Q ss_pred             CCCcceeE-EEeecCCCEEEEcc---c----ceEEeeCCCCCCCC
Q 026679          184 GNIGVVAC-LKWAPRRAMFVAAS---S----VLSFWIPNPSSNST  220 (235)
Q Consensus       184 ~~~~~v~~-~~~~~~~~~l~~~~---~----~i~iw~~~~~~~~~  220 (235)
                      .+...+.. ++|+|+++.|+.++   +    .+..|++++.....
T Consensus       352 ~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  396 (706)
T 2z3z_A          352 KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKD  396 (706)
T ss_dssp             CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEE
T ss_pred             CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCcee
Confidence            77777876 79999999887664   2    35555555554333

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=6.2e-23  Score=150.15  Aligned_cols=197  Identities=12%  Similarity=0.068  Sum_probs=142.7

Q ss_pred             hhhhhhhccc-ccceeEEEeecCCCeeEEEe--ccceEEEEe--cCcceeeeeeeccCCceEEEcCCCCEEE-EEecCCe
Q 026679            4 NRILRYFKGH-KERVISLCMSPVNDSFMSGS--LDHSVRIWD--LRVNACQGILRLRGRPTVAFDQQGLVFA-VAMEAGA   77 (235)
Q Consensus         4 ~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~--~d~~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~   77 (235)
                      ++....+.+| ...+.+++|+|++++|++++  .++...||.  ..++.............++|+|+++.++ ++..++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  152 (297)
T 2ojh_A           73 PSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQV  152 (297)
T ss_dssp             CSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTE
T ss_pred             CCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCc
Confidence            4444455555 47889999999999999998  334555554  4444432222222333489999999877 7778999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CCCcEEEEEcC-CCceeeeeccCCCCCcceeeEEeCC
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAY-GGEKRCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      +.+|++.....   ....+..+...+.+++|+|+++.|++++ .++.+.+|++. .+.....+  ..+...+..++|+|+
T Consensus       153 ~~l~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~s~d  227 (297)
T 2ojh_A          153 FDIYSMDIDSG---VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI--TDSAYGDWFPHPSPS  227 (297)
T ss_dssp             EEEEEEETTTC---CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC--CCCSEEEEEEEECTT
T ss_pred             eEEEEEECCCC---cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE--ecCCcccCCeEECCC
Confidence            99999754322   1344556777899999999999888766 48889999876 34444333  334456888999999


Q ss_pred             CcEEEEeCCC-----------CcEEEEEcCCCcee--eeecCCCcceeEEEeecCCCEEEEcc
Q 026679          156 GQYVVSGSGD-----------GTLHAWNINTRNEV--ACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       156 ~~~l~~~~~d-----------g~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      |++|++++.+           +.|++||+.+++..  ..+.+|...+..++|+|++++|++++
T Consensus       228 g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          228 GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred             CCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEE
Confidence            9999888765           56999999887653  34447788899999999999998886

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=9.4e-23  Score=166.83  Aligned_cols=210  Identities=12%  Similarity=0.035  Sum_probs=148.0

Q ss_pred             hhhhhhhhccccc---ceeEEEeecCCCeeEEEecc---------ceEEEEecCcceeeeeeec--cC--CceEEEcCCC
Q 026679            3 DNRILRYFKGHKE---RVISLCMSPVNDSFMSGSLD---------HSVRIWDLRVNACQGILRL--RG--RPTVAFDQQG   66 (235)
Q Consensus         3 ~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~d---------~~i~vwd~~~~~~~~~~~~--~~--~~~~~~~~~~   66 (235)
                      +++....+.+|..   .|.+++|||||++|++++.+         +.+++||+.+++.......  +.  ...++|+|+|
T Consensus        46 ~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG  125 (723)
T 1xfd_A           46 TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG  125 (723)
T ss_dssp             GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST
T ss_pred             CCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCC
Confidence            4555555666654   49999999999999998764         7888999998876322221  11  3448999999


Q ss_pred             CEEEEEecCCeEEEEeccCCCCCCceeEeecCCCc------------------ceeEEEEccCCCeEEEecCCC------
Q 026679           67 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA------------------EVCDIKFSNDGKSMLLTTTNN------  122 (235)
Q Consensus        67 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~d~------  122 (235)
                      +.|+.++. +.|++||+.+++.    ......+..                  .+.+++|+|||+.|++++.++      
T Consensus       126 ~~la~~~~-~~i~~~~~~~g~~----~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~  200 (723)
T 1xfd_A          126 QQLIFIFE-NNIYYCAHVGKQA----IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM  200 (723)
T ss_dssp             TCEEEEET-TEEEEESSSSSCC----EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred             CEEEEEEC-CeEEEEECCCCce----EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceE
Confidence            99999886 7999999987654    222222222                  237899999999999887543      


Q ss_pred             ----------------------------cEEEEEcCCCceeeeeccCC----CCCcceeeEEeCCCcEEEEeCC----CC
Q 026679          123 ----------------------------NIYVLDAYGGEKRCGFSLEP----SPNTNTEATFTPDGQYVVSGSG----DG  166 (235)
Q Consensus       123 ----------------------------~i~~~d~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~----dg  166 (235)
                                                  .|++||+.+++....+..+.    +...+..++|+|||++|++...    +.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  280 (723)
T 1xfd_A          201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVS  280 (723)
T ss_dssp             EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEE
T ss_pred             EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeE
Confidence                                        79999998887544433221    2356888999999999876543    35


Q ss_pred             cEEEEEcCCCceeeeecC-CCcce----eEEEeecCCCEEEEc-c---c------ceEEee-CCCCC
Q 026679          167 TLHAWNINTRNEVACWNG-NIGVV----ACLKWAPRRAMFVAA-S---S------VLSFWI-PNPSS  217 (235)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~-~~~~v----~~~~~~~~~~~l~~~-~---~------~i~iw~-~~~~~  217 (235)
                      .|++||+.+++....+.. +...+    ..++|+|||+.|+.. +   +      .+.+|+ ..+..
T Consensus       281 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             EEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence            799999999887665543 33333    378999999987754 2   4      366666 34444

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=2e-22  Score=164.62  Aligned_cols=193  Identities=9%  Similarity=0.050  Sum_probs=142.8

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccC-----CCC
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRS-----YDK   88 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-----~~~   88 (235)
                      ..|.+++|+|+ +.++.+ .++.|++||+.+++......... ...++|+|+|+.|+++ .++.|++||+.+     ++.
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~  158 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA  158 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence            56999999999 665555 35999999999887665544322 3449999999999985 789999999987     543


Q ss_pred             CCceeEeecCCCcc--------------eeEEEEccCCCeEEEec---------------------------------CC
Q 026679           89 GPFDTFLVGGDTAE--------------VCDIKFSNDGKSMLLTT---------------------------------TN  121 (235)
Q Consensus        89 ~~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~d  121 (235)
                          ......+...              +.++.|+|||++|++++                                 .+
T Consensus       159 ----~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          159 ----IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             ----EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             ----EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence                2112222222              47899999999999987                                 34


Q ss_pred             CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC-----cEEEEEcCCCceeeeec--CCCc---ceeE
Q 026679          122 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-----TLHAWNINTRNEVACWN--GNIG---VVAC  191 (235)
Q Consensus       122 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~--~~~~---~v~~  191 (235)
                      ..|++||+.+++.........+...+..++|+|||++|++++.++     .|++||+.+++....+.  .+..   .+..
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~  314 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP  314 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence            679999999887655443334556789999999999999877665     89999999884333332  1221   3467


Q ss_pred             EEeec--CCCEEEEcc--cceEEeeCC
Q 026679          192 LKWAP--RRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       192 ~~~~~--~~~~l~~~~--~~i~iw~~~  214 (235)
                      +.|+|  +|+++++++  +.+++|.++
T Consensus       315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          315 LTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             CEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             ceeecCCCCEEEEEEccCCccEEEEEE
Confidence            89999  999888876  668888775

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=6.5e-22  Score=162.33  Aligned_cols=204  Identities=10%  Similarity=0.062  Sum_probs=154.6

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC------------------ceEEEcCCCC
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR------------------PTVAFDQQGL   67 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~------------------~~~~~~~~~~   67 (235)
                      .+..+..|...+.+++|+|||++|+.++ ++.|++||+.+++.......+..                  ..++|+|||+
T Consensus       143 ~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~  221 (741)
T 2ecf_A          143 AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS  221 (741)
T ss_dssp             SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS
T ss_pred             eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCC
Confidence            3456777888999999999999999887 46899999998876655443332                  4599999999


Q ss_pred             EEEEEecCC---------------------------------eEEEEeccC-CCCCCceeEeec-CCCcceeEEEEccCC
Q 026679           68 VFAVAMEAG---------------------------------AIKLFDSRS-YDKGPFDTFLVG-GDTAEVCDIKFSNDG  112 (235)
Q Consensus        68 ~l~~~~~dg---------------------------------~v~i~d~~~-~~~~~~~~~~~~-~~~~~v~~~~~~~~~  112 (235)
                      .|++++.|+                                 .|.+||+.+ ++.   ...... .+...+..++| |||
T Consensus       222 ~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~-pDg  297 (741)
T 2ecf_A          222 AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT---QWIDLGKEQDIYLARVNW-RDP  297 (741)
T ss_dssp             CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC---EEECCCSCSSEEEEEEEE-EET
T ss_pred             EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce---EEecCCCCcceEEEEEEe-CCC
Confidence            999987765                                 788899877 553   111111 46778999999 999


Q ss_pred             CeEEEecC-----CCcEEEEEcCCCceeeeeccCCCC--CcceeeEEeCCCcEEEEeCCCCcEEEEEcC-CCceeeeecC
Q 026679          113 KSMLLTTT-----NNNIYVLDAYGGEKRCGFSLEPSP--NTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNG  184 (235)
Q Consensus       113 ~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~  184 (235)
                      +.|++++.     +..|++||+.+++....+..+...  ..+..++|+|||+++++++.||.+++|.+. +++ ...+..
T Consensus       298 ~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~  376 (741)
T 2ecf_A          298 QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH  376 (741)
T ss_dssp             TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC
T ss_pred             CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee
Confidence            99987654     567999999998876655433211  135679999999999999999988888765 445 677777


Q ss_pred             CCcceeEE-EeecCCCEEEEcc---c--ceEEeeCCC
Q 026679          185 NIGVVACL-KWAPRRAMFVAAS---S--VLSFWIPNP  215 (235)
Q Consensus       185 ~~~~v~~~-~~~~~~~~l~~~~---~--~i~iw~~~~  215 (235)
                      +...+..+ .|+|+++.|+..+   +  .+++|+++.
T Consensus       377 ~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          377 GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            77788887 5999998776543   3  789998853

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=7e-22  Score=158.06  Aligned_cols=205  Identities=14%  Similarity=0.029  Sum_probs=147.3

Q ss_pred             hhhhhhhhccc-ccceeEEEeecCCCeeEEEec-cceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEec---C
Q 026679            3 DNRILRYFKGH-KERVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAME---A   75 (235)
Q Consensus         3 ~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~---d   75 (235)
                      -.++++.++.+ ..+|.+++|+|||+.||+++. ||+++||+++.++..+....+.  ...++|+|+ +++++++.   +
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~   87 (582)
T 3o4h_A            9 FSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGA   87 (582)
T ss_dssp             HHHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTS
T ss_pred             HHHHHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCC
Confidence            34556666543 568999999999999998887 9999999997776655544442  334889999 77777765   4


Q ss_pred             CeEEEEeccC--CCCCCceeEeecCCCcceeEEEEccCCCe-EEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEE
Q 026679           76 GAIKLFDSRS--YDKGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF  152 (235)
Q Consensus        76 g~v~i~d~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~  152 (235)
                      ....+|.+..  ...  . . .+... ......+|+|+|+. +++...++.+.+||+.+++.........     .+++|
T Consensus        88 ~~~~l~~~~~~~~g~--~-~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-----~~~~~  157 (582)
T 3o4h_A           88 EQHALFKVNTSRPGE--E-Q-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-----FGFVS  157 (582)
T ss_dssp             CCEEEEEEETTSTTC--C-E-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-----CEEEE
T ss_pred             cceEEEEEeccCCCc--c-c-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-----ceEEE
Confidence            5567766654  222  1 1 22222 23446688888864 3344445556699999887655443221     67899


Q ss_pred             eCCCcEEEEeCCC----CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--c--ceEEeeCCCCCCC
Q 026679          153 TPDGQYVVSGSGD----GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S--VLSFWIPNPSSNS  219 (235)
Q Consensus       153 ~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~i~iw~~~~~~~~  219 (235)
                      +|||++|++++.+    +.|++||+.+++.. .+..|...+..++|+|||++|++++  +  .|++||++++...
T Consensus       158 spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          158 DIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             EEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             CCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            9999999988776    78999999888765 6677888899999999999999665  5  6999999876554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=3.8e-21  Score=144.34  Aligned_cols=201  Identities=14%  Similarity=0.197  Sum_probs=136.5

Q ss_pred             ccccceeEEEeecCCCeeEEEec---cceEEEEecCccee--eeeeecc--CCceEEEcCCCCEEEEEe-cCCeEEEEec
Q 026679           12 GHKERVISLCMSPVNDSFMSGSL---DHSVRIWDLRVNAC--QGILRLR--GRPTVAFDQQGLVFAVAM-EAGAIKLFDS   83 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~--~~~~~~~--~~~~~~~~~~~~~l~~~~-~dg~v~i~d~   83 (235)
                      .+......++|+|+|+ |++++.   ++.|++|++.+++.  +..+..+  ....++|+|++++|++++ .++.+.+|++
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            3456678899999999 655554   68999999977653  3332222  234499999999888887 6899999999


Q ss_pred             cCCCC-CCceeEeecC-------CCcceeEEEEccCCCeEEEecCCCcEEEEEcC-CCceeeee--ccCCCCCcceeeEE
Q 026679           84 RSYDK-GPFDTFLVGG-------DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEKRCGF--SLEPSPNTNTEATF  152 (235)
Q Consensus        84 ~~~~~-~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~--~~~~~~~~i~~~~~  152 (235)
                      ..... .........+       ....+.+++|+|+|+.+++...++.|.+|++. +++.....  .... ...+..++|
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-g~~p~~~~~  194 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA-GFGPRHLVF  194 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT-TCCEEEEEE
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC-CCCCceEEE
Confidence            64221 1111111111       12347889999999966666678899999998 45433221  2222 234678999


Q ss_pred             eCCCcEEEE-eCCCCcEEEEEcCC--Cce--eeeecCCC------cceeEEEeecCCCEEEEcc---cceEEeeCC
Q 026679          153 TPDGQYVVS-GSGDGTLHAWNINT--RNE--VACWNGNI------GVVACLKWAPRRAMFVAAS---SVLSFWIPN  214 (235)
Q Consensus       153 ~~~~~~l~~-~~~dg~i~v~d~~~--~~~--~~~~~~~~------~~v~~~~~~~~~~~l~~~~---~~i~iw~~~  214 (235)
                      +|+|++|++ +..++.|.+|++..  ++.  +..+....      ..+..++|+|+|++|++++   +.+.+|+++
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            999996655 56788999999874  442  22222221      4588999999999885543   679999986

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=1.6e-21  Score=146.15  Aligned_cols=193  Identities=11%  Similarity=0.072  Sum_probs=142.7

Q ss_pred             EEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC---CceEEEcCCCCEEE-EEecCCeEEEEeccCCCCCCceeE
Q 026679           19 SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTF   94 (235)
Q Consensus        19 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~   94 (235)
                      .+++++++.++++++.++.|++||+.+++....+..+.   ...++|+|+++.++ ++..++.|.+||+.+++.    ..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~----~~   79 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN----TF   79 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE----EE
Confidence            45788888899999999999999999999888887655   34599999998665 445689999999987543    22


Q ss_pred             eec-CC-----CcceeEEEEccCCCeEEEecCC------------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC
Q 026679           95 LVG-GD-----TAEVCDIKFSNDGKSMLLTTTN------------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG  156 (235)
Q Consensus        95 ~~~-~~-----~~~v~~~~~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  156 (235)
                      ... .+     ...+..++|+|+|+++++++.+            +.|.+||+.+++.........+...+.+++|+|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg  159 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  159 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC
Confidence            222 11     2337789999999999998865            89999999885543322211222357889999999


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeecCCC--------------------------------------------------
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWNGNI--------------------------------------------------  186 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--------------------------------------------------  186 (235)
                      + +++++.  .|++||..+++.+..+..+.                                                  
T Consensus       160 ~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  236 (349)
T 1jmx_B          160 S-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  236 (349)
T ss_dssp             C-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             c-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence            9 555544  39999999888766554221                                                  


Q ss_pred             ------------------cceeEEEeec-CCCEEEEcccceEEeeCCCCCC
Q 026679          187 ------------------GVVACLKWAP-RRAMFVAASSVLSFWIPNPSSN  218 (235)
Q Consensus       187 ------------------~~v~~~~~~~-~~~~l~~~~~~i~iw~~~~~~~  218 (235)
                                        ..+..++|+| ++++++++.+.+.+||+++.+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~v~~~d~~~~~~  287 (349)
T 1jmx_B          237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKL  287 (349)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEE
T ss_pred             EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEEcCeEEEEECccCeE
Confidence                              1345677789 9999988888899999976543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=1.1e-21  Score=166.32  Aligned_cols=199  Identities=8%  Similarity=0.048  Sum_probs=158.1

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc-------------CCceEEEc-CCCCEEEEE
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-------------GRPTVAFD-QQGLVFAVA   72 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-------------~~~~~~~~-~~~~~l~~~   72 (235)
                      .+.+..|. .+...+|+|+|+.|+.+ .++.|++||+..... ..+..+             ....++|+ |+|+.++++
T Consensus       238 ~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~  314 (1045)
T 1k32_A          238 LRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFV  314 (1045)
T ss_dssp             CEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEE
T ss_pred             ceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEE
Confidence            34455554 46778999999988887 489999999844433 344332             24459999 999999888


Q ss_pred             ecCCeEEEEeccCCCCCCceeEeecCCCc-ceeEEEEccCCCeEEEecCCCcEE-EEEcCCCceeeeeccCCCCCcceee
Q 026679           73 MEAGAIKLFDSRSYDKGPFDTFLVGGDTA-EVCDIKFSNDGKSMLLTTTNNNIY-VLDAYGGEKRCGFSLEPSPNTNTEA  150 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-~~d~~~~~~~~~~~~~~~~~~i~~~  150 (235)
                      + ++.+.+|++....     ...+..+.. .+..++|+ +|+.|++++.++.+. +||+.+++.... .  .+...+..+
T Consensus       315 ~-~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~--~~~~~~~~~  384 (1045)
T 1k32_A          315 S-RGQAFIQDVSGTY-----VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-E--ENLGNVFAM  384 (1045)
T ss_dssp             E-TTEEEEECTTSSB-----EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-C--CCCCSEEEE
T ss_pred             E-cCEEEEEcCCCCc-----eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-c--CCccceeee
Confidence            7 7899999987654     233455666 88999999 999999998888898 999987765432 2  445678999


Q ss_pred             EEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--c----------ceEEeeCCCCCC
Q 026679          151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S----------VLSFWIPNPSSN  218 (235)
Q Consensus       151 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~----------~i~iw~~~~~~~  218 (235)
                      +|+|+|++|++++.++.|++||+.+++.......|...+.+++|+|||++|++++  +          .+++||+++...
T Consensus       385 ~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~  464 (1045)
T 1k32_A          385 GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  464 (1045)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             EECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence            9999999999999999999999999988877778888999999999999998875  3          799999987653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=3.6e-22  Score=163.35  Aligned_cols=194  Identities=13%  Similarity=0.105  Sum_probs=143.8

Q ss_pred             eEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-----CceEEEcCCCCEEEEEec---------CCeEEEEec
Q 026679           18 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-----RPTVAFDQQGLVFAVAME---------AGAIKLFDS   83 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~---------dg~v~i~d~   83 (235)
                      .+++|+|+|+++++ +.|++|++||+.+++....+..+.     ...++|+|||+.|++++.         ++.+++||+
T Consensus        19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            37899999965554 469999999999998877776552     556999999999998876         789999999


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCC-----------------c
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN-----------------T  146 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-----------------~  146 (235)
                      .+++....  ..+   ...+..++|+|||+.|+.+. ++.|++||+.+++..... ...+..                 .
T Consensus        98 ~~g~~~~~--~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~-~~~~~~~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A           98 SNGEFVRG--NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT-FNGRENKIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             TTTEECCS--SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC-CCCBTTTEEESSCCHHHHHHTTCS
T ss_pred             CCCccccc--eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe-cCCCcCCeEcccccceeeeecccC
Confidence            87653100  111   24588899999999999885 789999999887765432 122211                 1


Q ss_pred             ceeeEEeCCCcEEEEeCCCC----------------------------------cEEEEEcCCCcee--------eeecC
Q 026679          147 NTEATFTPDGQYVVSGSGDG----------------------------------TLHAWNINTRNEV--------ACWNG  184 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~~~~--------~~~~~  184 (235)
                      ...++|+|||++|++++.|.                                  .|++||+.+++..        ..+.+
T Consensus       171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  250 (719)
T 1z68_A          171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS  250 (719)
T ss_dssp             SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred             cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence            24799999999999887542                                  7889999887653        22346


Q ss_pred             CCcceeEEEeecCCCEEEEcc------cceEEee----CCCCCCC
Q 026679          185 NIGVVACLKWAPRRAMFVAAS------SVLSFWI----PNPSSNS  219 (235)
Q Consensus       185 ~~~~v~~~~~~~~~~~l~~~~------~~i~iw~----~~~~~~~  219 (235)
                      |...+..++|+||++++++..      ..|.+|+    .++++..
T Consensus       251 ~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~  295 (719)
T 1z68_A          251 SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP  295 (719)
T ss_dssp             SCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred             CcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence            778899999999988777643      2388888    6655443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=2.8e-21  Score=163.90  Aligned_cols=190  Identities=13%  Similarity=0.046  Sum_probs=152.8

Q ss_pred             cccceeEEEee-cCCCeeEEEeccceEEEEecCcceeeeeeeccCC---ceEEEcCCCCEEEEEecCCeEE-EEeccCCC
Q 026679           13 HKERVISLCMS-PVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR---PTVAFDQQGLVFAVAMEAGAIK-LFDSRSYD   87 (235)
Q Consensus        13 h~~~v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~-i~d~~~~~   87 (235)
                      |...+.+++|+ |+|+.|++++ ++.+.+|++..+.... +..+..   ..++|+ +++.++.++.++.+. +||+....
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~  370 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK  370 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence            55679999999 9999999887 7899999998776544 333322   238899 999999998888888 88987654


Q ss_pred             CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC-
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-  166 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-  166 (235)
                      .     ..+..+...+..++|+|||++|++++.++.|++||+.+++......  .+...+..++|+|||++|++++.++ 
T Consensus       371 ~-----~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~--~~~~~v~~~~~SpDG~~la~~~~~~~  443 (1045)
T 1k32_A          371 A-----EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER--SREAMITDFTISDNSRFIAYGFPLKH  443 (1045)
T ss_dssp             E-----EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred             c-----eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc--CCCCCccceEECCCCCeEEEEecCcc
Confidence            2     2333677889999999999999999999999999999988766543  3445688999999999998887644 


Q ss_pred             ---------cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          167 ---------TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       167 ---------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                               .|++||+.+++ +..+..|...+..++|+|+|++|++++  +...+|+.
T Consensus       444 ~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          444 GETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             STTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             ccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence                     89999998877 666777888889999999999998877  44666654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.88  E-value=4.4e-22  Score=162.86  Aligned_cols=214  Identities=12%  Similarity=0.077  Sum_probs=148.0

Q ss_pred             hhhhhhhhccccc---ceeEEEeecCCCeeEEEec---------cceEEEEecCcceee--eeeeccCCceEEEcCCCCE
Q 026679            3 DNRILRYFKGHKE---RVISLCMSPVNDSFMSGSL---------DHSVRIWDLRVNACQ--GILRLRGRPTVAFDQQGLV   68 (235)
Q Consensus         3 ~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~---------d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~   68 (235)
                      +++....+.+|..   .+.+++|||||++|++++.         |+.|++||+.+++..  ..+. .....++|+|||+.
T Consensus        45 ~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~-~~~~~~~~SPDG~~  123 (719)
T 1z68_A           45 TGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP-RPIQYLCWSPVGSK  123 (719)
T ss_dssp             SCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-SSBCCEEECSSTTC
T ss_pred             CCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC-cccccceECCCCCE
Confidence            3444444444443   3899999999999998876         789999999988763  1221 23445999999999


Q ss_pred             EEEEecCCeEEEEeccCCCCCCceeEeecCCCcce-----------------eEEEEccCCCeEEEecCCC---------
Q 026679           69 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV-----------------CDIKFSNDGKSMLLTTTNN---------  122 (235)
Q Consensus        69 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~l~~~~~d~---------  122 (235)
                      |+.+. ++.|++||+.+++..   .....++...+                 .+++|+|||+.|++++.|.         
T Consensus       124 la~~~-~~~i~~~~~~~g~~~---~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~  199 (719)
T 1z68_A          124 LAYVY-QNNIYLKQRPGDPPF---QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYS  199 (719)
T ss_dssp             EEEEE-TTEEEEESSTTSCCE---ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEE
T ss_pred             EEEEE-CCeEEEEeCCCCCcE---EEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEee
Confidence            99885 789999999876531   11112222212                 4899999999999987652         


Q ss_pred             -------------------------cEEEEEcCCCcee--eeec----cCCCCCcceeeEEeCCCcEEEEeCCC----Cc
Q 026679          123 -------------------------NIYVLDAYGGEKR--CGFS----LEPSPNTNTEATFTPDGQYVVSGSGD----GT  167 (235)
Q Consensus       123 -------------------------~i~~~d~~~~~~~--~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d----g~  167 (235)
                                               .|++||+.+++..  ..+.    +..+...+..++|+||++++++....    ..
T Consensus       200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~  279 (719)
T 1z68_A          200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSV  279 (719)
T ss_dssp             ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEE
T ss_pred             ccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEE
Confidence                                     7889999887642  1111    12355668999999998877764322    34


Q ss_pred             EEEEE----cCCCceeeee----cCCCccee-----EEEeecCCCEEEE--cc--c--ceEEeeCCCCCCCCC
Q 026679          168 LHAWN----INTRNEVACW----NGNIGVVA-----CLKWAPRRAMFVA--AS--S--VLSFWIPNPSSNSTD  221 (235)
Q Consensus       168 i~v~d----~~~~~~~~~~----~~~~~~v~-----~~~~~~~~~~l~~--~~--~--~i~iw~~~~~~~~~~  221 (235)
                      |.+||    ..+++....+    ..|...+.     .+.|+|||+.++.  +.  +  .+.+|++++.....+
T Consensus       280 l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~l  352 (719)
T 1z68_A          280 LSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQI  352 (719)
T ss_dssp             EEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEEC
T ss_pred             EEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEec
Confidence            88999    8777776655    46666676     8899999996654  22  3  477778766554333

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.88  E-value=7.4e-21  Score=156.07  Aligned_cols=195  Identities=11%  Similarity=0.097  Sum_probs=146.1

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc-----e--EEEcCCCCEEEEEecC---------Ce
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-----T--VAFDQQGLVFAVAMEA---------GA   77 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~d---------g~   77 (235)
                      .....++.|+|+|++++++  |++|++||+.+++....+..+...     .  ++|+|||+.|+.++.+         +.
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            4456789999999888886  899999999999887777766422     2  7899999999998876         56


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc-----------
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT-----------  146 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-----------  146 (235)
                      +.+||+.+++.     ..+..+...+...+|||||+.|+.+ .++.|++||+.+++..+. ....+...           
T Consensus        94 ~~~~d~~~~~~-----~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~l-t~~g~~~~~~~g~~~~v~~  166 (740)
T 4a5s_A           94 YDIYDLNKRQL-----ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI-TWTGKEDIIYNGITDWVYE  166 (740)
T ss_dssp             EEEEETTTTEE-----CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC-CSCCBTTTEEESBCCHHHH
T ss_pred             EEEEECCCCcE-----EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEE-cCCCCccceecCccccccc
Confidence            67999988653     2344566789999999999999888 468999999988775432 22222211           


Q ss_pred             ------ceeeEEeCCCcEEEEeCCC------------------------------------CcEEEEEcCC---Cc--ee
Q 026679          147 ------NTEATFTPDGQYVVSGSGD------------------------------------GTLHAWNINT---RN--EV  179 (235)
Q Consensus       147 ------i~~~~~~~~~~~l~~~~~d------------------------------------g~i~v~d~~~---~~--~~  179 (235)
                            ...+.|||||++|+.++.|                                    ..|++||+.+   ++  ..
T Consensus       167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~  246 (740)
T 4a5s_A          167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS  246 (740)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred             chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence                  2358899999999886422                                    1588899988   73  22


Q ss_pred             eeec------CCCcceeEEEeecCCCEEEEcc------cceEEeeCCCCC
Q 026679          180 ACWN------GNIGVVACLKWAPRRAMFVAAS------SVLSFWIPNPSS  217 (235)
Q Consensus       180 ~~~~------~~~~~v~~~~~~~~~~~l~~~~------~~i~iw~~~~~~  217 (235)
                      ..+.      +|...+..++|+|||+.++...      ..|.+||+++++
T Consensus       247 ~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          247 IQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             EEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            2333      3777899999999999766553      359999987765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=3.6e-20  Score=138.06  Aligned_cols=184  Identities=13%  Similarity=0.095  Sum_probs=139.5

Q ss_pred             CeeEEEeccceEEEEecCcceeeeeeeccC----CceEEEcCCCCEEE-EEecCCeEEEEeccCCCCCCceeEeecC---
Q 026679           27 DSFMSGSLDHSVRIWDLRVNACQGILRLRG----RPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLVGG---   98 (235)
Q Consensus        27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~~~---   98 (235)
                      +++++++.++.|++||+.+++....+....    ...++|+|+++.++ ++..++.|.+||+.+++.  ........   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--LGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--EEEEECCBTTE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe--EeeEEcCCccc
Confidence            478999999999999999999888887554    34599999997665 455678999999987653  11122111   


Q ss_pred             CCcceeEEEEccCCCeEEEec------------CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679           99 DTAEVCDIKFSNDGKSMLLTT------------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG  166 (235)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  166 (235)
                      +...+..++|+|+|++++++.            .++.|.+||+.+++....+...   ..+..++|+|++++|+++  ++
T Consensus        80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~~  154 (337)
T 1pby_B           80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL--GR  154 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE--SS
T ss_pred             ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe--CC
Confidence            122567899999999988886            5799999999988877666543   346789999999988887  57


Q ss_pred             cEEEEEcCCCceeeeecCCC------------------------------------------------------------
Q 026679          167 TLHAWNINTRNEVACWNGNI------------------------------------------------------------  186 (235)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~------------------------------------------------------------  186 (235)
                      .|++||+.+++.+..+..+.                                                            
T Consensus       155 ~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  234 (337)
T 1pby_B          155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             eEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence            89999998876654432211                                                            


Q ss_pred             ------cceeEEEeecCCCEEEEcccceEEeeCCCCC
Q 026679          187 ------GVVACLKWAPRRAMFVAASSVLSFWIPNPSS  217 (235)
Q Consensus       187 ------~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~  217 (235)
                            ..+.+++|+|++++++++++.+.+||+++.+
T Consensus       235 ~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~  271 (337)
T 1pby_B          235 EVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNA  271 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTE
T ss_pred             ecCCCCCceeeEEECCCCCEEEEeCCeEEEEECCCCc
Confidence                  1244689999999999888889999987654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=7.3e-20  Score=138.08  Aligned_cols=199  Identities=11%  Similarity=0.120  Sum_probs=135.0

Q ss_pred             cccceeEEEeecCCCeeEEEe-ccceEEEEecCcceeeeee----e--ccC----------CceEEEcCCCCEEEEEe-c
Q 026679           13 HKERVISLCMSPVNDSFMSGS-LDHSVRIWDLRVNACQGIL----R--LRG----------RPTVAFDQQGLVFAVAM-E   74 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~----~--~~~----------~~~~~~~~~~~~l~~~~-~   74 (235)
                      +......+++  ++++|++++ .++.|.+|++.....+..+    .  ...          ...++|+|+++.+++++ .
T Consensus        98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  175 (361)
T 3scy_A           98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG  175 (361)
T ss_dssp             SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence            4445666777  777777665 5889999999754322211    1  111          13489999999766655 4


Q ss_pred             CCeEEEEeccCCCC----C-Cce----eEeecCCCcceeEEEEccCCCeEEEec-CCCcEEEEEcCCCceeeeecc---C
Q 026679           75 AGAIKLFDSRSYDK----G-PFD----TFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSL---E  141 (235)
Q Consensus        75 dg~v~i~d~~~~~~----~-~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~---~  141 (235)
                      ++.+.+|++.....    . ...    .............++|+|+|+++++++ .++.|.+||+.+++.......   .
T Consensus       176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~  255 (361)
T 3scy_A          176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT  255 (361)
T ss_dssp             TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS
T ss_pred             CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC
Confidence            88999999876442    1 100    112223445678999999999887776 589999999987754322221   2


Q ss_pred             CCCCcceeeEEeCCCcEEEEeCC--CCcEEEEEcC--CCc--eeeeecCCCcceeEEEeecCCCEEEEcc---cceEEee
Q 026679          142 PSPNTNTEATFTPDGQYVVSGSG--DGTLHAWNIN--TRN--EVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWI  212 (235)
Q Consensus       142 ~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~  212 (235)
                      .+......++|+|+|++|+++..  ++.|.+|++.  +++  .+..+.. ...+.+++|+|+|++|++++   +.+.+|+
T Consensus       256 ~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          256 VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence            22234678999999999876655  4889999995  444  3444443 45788999999999888875   6699976


Q ss_pred             CC
Q 026679          213 PN  214 (235)
Q Consensus       213 ~~  214 (235)
                      ++
T Consensus       335 ~d  336 (361)
T 3scy_A          335 RD  336 (361)
T ss_dssp             EC
T ss_pred             EE
Confidence            65

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=4.3e-20  Score=139.62  Aligned_cols=197  Identities=10%  Similarity=0.060  Sum_probs=138.3

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecC-cceeeeeeec--cC-CceEEEcCCCCE--EEEEe-------------cC
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLR-VNACQGILRL--RG-RPTVAFDQQGLV--FAVAM-------------EA   75 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~--~~-~~~~~~~~~~~~--l~~~~-------------~d   75 (235)
                      ..+..++|+|+|++|++++.+ .|.+|++. +++.......  .. ...++++|+|+.  ++++.             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            467899999999999998888 99999997 6765543332  12 223889999994  44543             68


Q ss_pred             CeEEEEeccC-CCCCCceeEee--cCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcC-CCceeee--eccCCCCCcce
Q 026679           76 GAIKLFDSRS-YDKGPFDTFLV--GGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAY-GGEKRCG--FSLEPSPNTNT  148 (235)
Q Consensus        76 g~v~i~d~~~-~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~-~~~~~~~--~~~~~~~~~i~  148 (235)
                      |.+.+|++.. ++..  .....  ..+...+.+++|+|+|++++++.. ++.|++||+. +++....  +....+...+.
T Consensus       119 g~v~v~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          119 GYGNVFSVSETGKLE--KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             CEEEEEEECTTCCEE--EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             ceEEEEccCCCCcCc--ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            9999999974 3211  11111  124467889999999998887654 6799999998 6665322  22222234578


Q ss_pred             eeEEeCCCcEEEEeCC-CCcEEEEEcC--CCcee------eeec----CCCc------ceeEEE-eecCCCEEEEcc---
Q 026679          149 EATFTPDGQYVVSGSG-DGTLHAWNIN--TRNEV------ACWN----GNIG------VVACLK-WAPRRAMFVAAS---  205 (235)
Q Consensus       149 ~~~~~~~~~~l~~~~~-dg~i~v~d~~--~~~~~------~~~~----~~~~------~v~~~~-~~~~~~~l~~~~---  205 (235)
                      .++|+|+|++|++++. ++.|.+|++.  +++..      ..+.    +|..      .+..++ |+|||++|++++   
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            8999999999887764 7899999875  45532      1221    1222      588999 999999988765   


Q ss_pred             c-----ceEEeeCC
Q 026679          206 S-----VLSFWIPN  214 (235)
Q Consensus       206 ~-----~i~iw~~~  214 (235)
                      +     .+.+|+++
T Consensus       277 ~~~~~~~i~v~~~~  290 (365)
T 1jof_A          277 KFELQGYIAGFKLR  290 (365)
T ss_dssp             STTSCCEEEEEEEC
T ss_pred             CCCCCCeEEEEEEC
Confidence            3     79999986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=3.1e-20  Score=148.57  Aligned_cols=184  Identities=14%  Similarity=0.111  Sum_probs=141.8

Q ss_pred             eeEEEeecCCCe-eEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecC----CeEEEEeccCCCCCCc
Q 026679           17 VISLCMSPVNDS-FMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEA----GAIKLFDSRSYDKGPF   91 (235)
Q Consensus        17 v~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~v~i~d~~~~~~~~~   91 (235)
                      +...+|+|+++. +++.+.++.+.+||+.+++.......+. ..++|+|||+.+++++.+    +.|++||+.+++.   
T Consensus       112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~---  187 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL---  187 (582)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC---
T ss_pred             ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc---
Confidence            446688888853 3333444455699999887766665554 679999999999988877    7899999987663   


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCCC--cEEEEEcCCCceeeeeccCCCCCcceeeE--------EeCCCcEEEE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEAT--------FTPDGQYVVS  161 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~  161 (235)
                        ..+..+...+..++|+|||+.|+++..++  .|++||+.+++.. .  ...+...+..++        |+|||.++++
T Consensus       188 --~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~spdg~~~~~  262 (582)
T 3o4h_A          188 --RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D--LELPSKDFSSYRPTAITWLGYLPDGRLAVV  262 (582)
T ss_dssp             --EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E--CCCSCSHHHHHCCSEEEEEEECTTSCEEEE
T ss_pred             --eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E--ccCCCcChhhhhhccccceeEcCCCcEEEE
Confidence              24567778899999999999999888888  8999999988766 3  334445577777        9999988899


Q ss_pred             eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCC
Q 026679          162 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNP  215 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~  215 (235)
                      ++.++.+++|++  ++...   .+.+.+.+++|+ +++++++++     ..+.+|+..+
T Consensus       263 ~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          263 ARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             EEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence            999999999999  66554   244678999999 999888776     3366666554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=3.3e-19  Score=134.53  Aligned_cols=199  Identities=13%  Similarity=0.115  Sum_probs=134.9

Q ss_pred             cccceeEEEeecCCCeeEEEecc----ceEEEEecCc--cee--eeeeeccCCce--EEEcCCCCEEEEEe-cCCeEEEE
Q 026679           13 HKERVISLCMSPVNDSFMSGSLD----HSVRIWDLRV--NAC--QGILRLRGRPT--VAFDQQGLVFAVAM-EAGAIKLF   81 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d----~~i~vwd~~~--~~~--~~~~~~~~~~~--~~~~~~~~~l~~~~-~dg~v~i~   81 (235)
                      +......++|+|+|++|++++.+    +.|.+|++..  ++.  +.....+....  +++  +++.+++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            55677889999999999998876    7999998865  433  22333233222  555  888777776 57899999


Q ss_pred             eccCCCCC-Ccee-Eeec--------CCCcceeEEEEccCCCeEEEec-CCCcEEEEEcCCCce------e------eee
Q 026679           82 DSRSYDKG-PFDT-FLVG--------GDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEK------R------CGF  138 (235)
Q Consensus        82 d~~~~~~~-~~~~-~~~~--------~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~------~------~~~  138 (235)
                      ++...... .... ....        .+...+.+++|+|+|+++++++ .++.|.+|++.....      +      ...
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99754321 1111 1111        1123457899999999776655 488999999875432      1      122


Q ss_pred             ccCCCCCcceeeEEeCCCcEEEEeC-CCCcEEEEEcCCCce--eeee---cCCCcceeEEEeecCCCEEEEcc----cce
Q 026679          139 SLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNE--VACW---NGNIGVVACLKWAPRRAMFVAAS----SVL  208 (235)
Q Consensus       139 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~l~~~~----~~i  208 (235)
                      ... ....+..++|+|+|+++++++ .++.|.+||+.+++.  +..+   ..+...+..++|+|+|++|+++.    +.+
T Consensus       206 ~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i  284 (361)
T 3scy_A          206 KVA-PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV  284 (361)
T ss_dssp             ECC-TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred             ecC-CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence            222 224468899999999887766 689999999987654  2222   22334568999999999886654    459


Q ss_pred             EEeeCC
Q 026679          209 SFWIPN  214 (235)
Q Consensus       209 ~iw~~~  214 (235)
                      .+|+++
T Consensus       285 ~v~~~~  290 (361)
T 3scy_A          285 AIFKVD  290 (361)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=8.7e-20  Score=137.97  Aligned_cols=200  Identities=9%  Similarity=0.026  Sum_probs=136.8

Q ss_pred             eeEEEeecCCCe--eEEEe-------------ccceEEEEecC-cceeeeeeec----c--CCceEEEcCCCCEEEEEec
Q 026679           17 VISLCMSPVNDS--FMSGS-------------LDHSVRIWDLR-VNACQGILRL----R--GRPTVAFDQQGLVFAVAME   74 (235)
Q Consensus        17 v~~~~~~~~~~~--l~s~~-------------~d~~i~vwd~~-~~~~~~~~~~----~--~~~~~~~~~~~~~l~~~~~   74 (235)
                      ..+++|+|+|++  +++++             .++.+.+|++. .++....+..    +  ....++|+|+|++++++..
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~  164 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence            556899999984  55553             68999999997 4554433331    1  2334999999998887764


Q ss_pred             -CCeEEEEecc-CCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcC--CCceee---eec-cCC---
Q 026679           75 -AGAIKLFDSR-SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAY--GGEKRC---GFS-LEP---  142 (235)
Q Consensus        75 -dg~v~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~--~~~~~~---~~~-~~~---  142 (235)
                       ++.|.+||+. +++...........+...+..++|+|+|+++++++. ++.|.+|++.  +++...   .+. ...   
T Consensus       165 ~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  244 (365)
T 1jof_A          165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP  244 (365)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred             CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence             6899999998 443211111111123466899999999998887765 7899999865  454321   121 111   


Q ss_pred             -CCC------cceeeE-EeCCCcEEEEeCCCC------cEEEEEcC-CCceee---eecCCCcceeEEEeec---CCCEE
Q 026679          143 -SPN------TNTEAT-FTPDGQYVVSGSGDG------TLHAWNIN-TRNEVA---CWNGNIGVVACLKWAP---RRAMF  201 (235)
Q Consensus       143 -~~~------~i~~~~-~~~~~~~l~~~~~dg------~i~v~d~~-~~~~~~---~~~~~~~~v~~~~~~~---~~~~l  201 (235)
                       +..      .+..++ |+|||++|+++..+.      .|.+|++. +++...   ....+...+..++|+|   +|++|
T Consensus       245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l  324 (365)
T 1jof_A          245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM  324 (365)
T ss_dssp             CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred             CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEE
Confidence             111      478899 999999988765432      89999996 565443   2333455678899999   89999


Q ss_pred             EEcc---cceEEeeCCCC
Q 026679          202 VAAS---SVLSFWIPNPS  216 (235)
Q Consensus       202 ~~~~---~~i~iw~~~~~  216 (235)
                      ++++   +.+++|+++..
T Consensus       325 ~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          325 AITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECSSSCEEEEEEEETT
T ss_pred             EEEEcCCCeEEEEEEchh
Confidence            8886   67999998765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=1.5e-19  Score=137.58  Aligned_cols=208  Identities=12%  Similarity=0.070  Sum_probs=149.1

Q ss_pred             hhhhhhhhcccccceeE-----EEeecCCCeeEEEec-cc--eEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEE
Q 026679            3 DNRILRYFKGHKERVIS-----LCMSPVNDSFMSGSL-DH--SVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVA   72 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~-----~~~~~~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~   72 (235)
                      ++..+..+..|......     .+|+|||++|+.++. ++  .|.+||+.+++.......+...  ...|+|+++.|+.+
T Consensus        19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~   98 (388)
T 3pe7_A           19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYV   98 (388)
T ss_dssp             TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred             CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence            45556667777665555     889999999888887 66  4888899888877776665543  37899999999999


Q ss_pred             ecCCeEEEEeccCCCCCCceeEeecCCCcceeEE--EEccCCCeEEEe----------------------cCCCcEEEEE
Q 026679           73 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI--KFSNDGKSMLLT----------------------TTNNNIYVLD  128 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~----------------------~~d~~i~~~d  128 (235)
                      ..++.+++||+.+++.    ......+...+...  .++|+++.++..                      ..+..|.+||
T Consensus        99 ~~~~~l~~~d~~~g~~----~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  174 (388)
T 3pe7_A           99 KDGRNLMRVDLATLEE----NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD  174 (388)
T ss_dssp             ETTTEEEEEETTTCCE----EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred             eCCCeEEEEECCCCcc----eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence            9999999999988664    22233333434333  348899887742                      2346799999


Q ss_pred             cCCCceeeeeccCCCCCcceeeEEeC-CCcEEEEeCCC------CcEEEEEcCCCceeeeecCCC--cceeEEEeecCCC
Q 026679          129 AYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGD------GTLHAWNINTRNEVACWNGNI--GVVACLKWAPRRA  199 (235)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~  199 (235)
                      +.+++......   +...+..+.|+| +|+.|+....+      ..|.++|...++.. .+..+.  ..+..+.|+|||+
T Consensus       175 ~~~g~~~~l~~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          175 LKTGESTVILQ---ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGS  250 (388)
T ss_dssp             TTTCCEEEEEE---ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSS
T ss_pred             CCCCceEEeec---CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCC
Confidence            99887654433   234578899999 99998876653      37888887655443 333333  3578899999999


Q ss_pred             EEEEcc-----cc--eEEeeCCCCCC
Q 026679          200 MFVAAS-----SV--LSFWIPNPSSN  218 (235)
Q Consensus       200 ~l~~~~-----~~--i~iw~~~~~~~  218 (235)
                      .|+..+     ..  +.+||+++++.
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          251 ALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             CEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             EEEEEecCCCCCcceEEEEecCCCce
Confidence            886654     12  99999987654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=4e-20  Score=151.73  Aligned_cols=217  Identities=10%  Similarity=0.058  Sum_probs=144.7

Q ss_pred             hhhhhhhhcccccc-----eeEEEeecCCCeeEEEecc---------ceEEEEecCcceeeeeeeccC-CceEEEcCCCC
Q 026679            3 DNRILRYFKGHKER-----VISLCMSPVNDSFMSGSLD---------HSVRIWDLRVNACQGILRLRG-RPTVAFDQQGL   67 (235)
Q Consensus         3 ~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~~d---------~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~   67 (235)
                      +++....+.+|...     ...++|||||++|+.++.+         +.+.+||+.+++......... ....+|+|||+
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~  124 (740)
T 4a5s_A           45 YGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGH  124 (740)
T ss_dssp             TCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTT
T ss_pred             CCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCC
Confidence            45544555666532     2447889999999998876         566799999988665333222 33499999999


Q ss_pred             EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcc-----------------eeEEEEccCCCeEEEecCCC--------
Q 026679           68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE-----------------VCDIKFSNDGKSMLLTTTNN--------  122 (235)
Q Consensus        68 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~l~~~~~d~--------  122 (235)
                      .|+.+ .++.|++|++.+++.   ......++...                 ...+.|+|||+.|+..+.|.        
T Consensus       125 ~la~~-~~~~i~~~~~~~~~~---~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~  200 (740)
T 4a5s_A          125 KLAYV-WNNDIYVKIEPNLPS---YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (740)
T ss_dssp             CEEEE-ETTEEEEESSTTSCC---EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             EEEEE-ECCeEEEEECCCCce---EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence            99888 568999999987653   12222222221                 23589999999999875321        


Q ss_pred             ----------------------------cEEEEEcCC---Cce--eeeeccC----CCCCcceeeEEeCCCcEEEEeC--
Q 026679          123 ----------------------------NIYVLDAYG---GEK--RCGFSLE----PSPNTNTEATFTPDGQYVVSGS--  163 (235)
Q Consensus       123 ----------------------------~i~~~d~~~---~~~--~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~--  163 (235)
                                                  .|++||+.+   ++.  ...+...    .+...+..++|+|||+.++...  
T Consensus       201 ~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r  280 (740)
T 4a5s_A          201 SFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRR  280 (740)
T ss_dssp             EECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEES
T ss_pred             EeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCC
Confidence                                        488899888   632  1222211    2456688999999999766543  


Q ss_pred             --CCCcEEEEEcCCCc----ee--eee--cCCCccee-----EEEeecCCCEEE-Ecc-----cceEEeeCCCCCCCCCC
Q 026679          164 --GDGTLHAWNINTRN----EV--ACW--NGNIGVVA-----CLKWAPRRAMFV-AAS-----SVLSFWIPNPSSNSTDE  222 (235)
Q Consensus       164 --~dg~i~v~d~~~~~----~~--~~~--~~~~~~v~-----~~~~~~~~~~l~-~~~-----~~i~iw~~~~~~~~~~~  222 (235)
                        .+..|++||+.+++    +.  ..+  ..|...+.     .+.|+|||+.++ ..+     ..|.+|+.+++....+.
T Consensus       281 ~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT  360 (740)
T 4a5s_A          281 IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT  360 (740)
T ss_dssp             STTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred             CCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc
Confidence              33479999999887    22  222  34555444     789999999876 553     44888888876655544


Q ss_pred             C
Q 026679          223 S  223 (235)
Q Consensus       223 ~  223 (235)
                      .
T Consensus       361 ~  361 (740)
T 4a5s_A          361 K  361 (740)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=1.9e-17  Score=120.97  Aligned_cols=197  Identities=9%  Similarity=0.110  Sum_probs=142.9

Q ss_pred             cccceeEEEee-cCCCeeEEEec-cceEEEEecCcceeeeeeeccC---CceEEEcCCCCEEEEEecCCeEEEEeccCCC
Q 026679           13 HKERVISLCMS-PVNDSFMSGSL-DHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD   87 (235)
Q Consensus        13 h~~~v~~~~~~-~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~   87 (235)
                      |...+.++++. +++.++++... ++.|++|| .+++....+....   ...++++|+++++++...++.|.+||.....
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~  153 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV  153 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE
Confidence            44578899995 66666666543 88999999 5666666554322   2348999999988887788999999964311


Q ss_pred             CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC-
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-  166 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-  166 (235)
                         ........+...+..++++|+|+.+++...++.|++||. .++.+..+....+...+..++++|+|+++++...++ 
T Consensus       154 ---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~  229 (286)
T 1q7f_A          154 ---LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNF  229 (286)
T ss_dssp             ---EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred             ---EEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence               112221234456889999999997777778999999997 455555554433335578999999999888888776 


Q ss_pred             cEEEEEcCCCceeeeecCCCc--ceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679          167 TLHAWNINTRNEVACWNGNIG--VVACLKWAPRRAMFVAAS-SVLSFWIPNP  215 (235)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~-~~i~iw~~~~  215 (235)
                      .|.+||. +++.+..+..+..  .+.+++++|+|+++++.. +.|++|++..
T Consensus       230 ~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          230 NLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             EEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence            9999995 6666666654432  477999999998887754 7799998854

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=5.3e-18  Score=127.93  Aligned_cols=206  Identities=13%  Similarity=0.111  Sum_probs=137.3

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEe----------ccceEEEEecCcceeeeeeecc-------C-CceEEEc
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGS----------LDHSVRIWDLRVNACQGILRLR-------G-RPTVAFD   63 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~-------~-~~~~~~~   63 (235)
                      ++++++..+..+..+  .++|+|+++++++++          .++.|.+||..+.+.+..+...       . ...++++
T Consensus        39 ~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s  116 (361)
T 2oiz_A           39 TNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT  116 (361)
T ss_dssp             TTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC
T ss_pred             CCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC
Confidence            355666667666666  899999999998886          3678999999998888877643       1 2239999


Q ss_pred             CCCCEEEEEec--CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEc--------------------------------
Q 026679           64 QQGLVFAVAME--AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS--------------------------------  109 (235)
Q Consensus        64 ~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--------------------------------  109 (235)
                      |+|++|+++..  ++.|.+||+.+.+.    ...+..... ...+.+.                                
T Consensus       117 pdg~~l~v~n~~~~~~v~v~d~~~~~~----~~~~i~~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~  191 (361)
T 2oiz_A          117 TDGKFIVLQNASPATSIGIVDVAKGDY----VEDVTAAAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR  191 (361)
T ss_dssp             TTSSEEEEEEESSSEEEEEEETTTTEE----EEEEGGGTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE
T ss_pred             CCCCEEEEECCCCCCeEEEEECCCCcE----EEEEecCCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc
Confidence            99999998874  58999999987542    111000000 0011122                                


Q ss_pred             -----------------cCCCeEEEecCCCcEEEEEcCCCcee--eeeccCC--------CCCcceeeEEeCCCcEEEEe
Q 026679          110 -----------------NDGKSMLLTTTNNNIYVLDAYGGEKR--CGFSLEP--------SPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus       110 -----------------~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~--------~~~~i~~~~~~~~~~~l~~~  162 (235)
                                       |++..++..+.++.+.++|+......  ..+....        .+.....++|+|+++.++++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~  271 (361)
T 2oiz_A          192 SKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVF  271 (361)
T ss_dssp             CCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEE
T ss_pred             ccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEE
Confidence                             22223333344455666665433211  1111100        00112237899998887765


Q ss_pred             CC-----------CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679          163 SG-----------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS  216 (235)
Q Consensus       163 ~~-----------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~  216 (235)
                      ..           .+.|.+||+.+++.+..+..+.  +.+++|+|+|++|++++ +.+.+||..+.
T Consensus       272 ~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~  335 (361)
T 2oiz_A          272 MHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQP  335 (361)
T ss_dssp             EESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSS
T ss_pred             EccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCC
Confidence            32           3479999999999999998776  99999999999998887 78999999877

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=2.3e-18  Score=139.71  Aligned_cols=205  Identities=14%  Similarity=0.012  Sum_probs=137.6

Q ss_pred             cccceeEEEeecCCCeeEEEecc----------ceEEEEecCc------ceeeeee-eccC-CceEEEcCCCCEEEEEec
Q 026679           13 HKERVISLCMSPVNDSFMSGSLD----------HSVRIWDLRV------NACQGIL-RLRG-RPTVAFDQQGLVFAVAME   74 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d----------~~i~vwd~~~------~~~~~~~-~~~~-~~~~~~~~~~~~l~~~~~   74 (235)
                      |...+.+++|+|||+.|++++.|          ..|++||+.+      ++..... ..+. ...++|+|||+.|+.++.
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEEC
Confidence            67788999999999999998877          5899999987      5544333 2222 223899999999998875


Q ss_pred             C--------CeEEEEecc-CCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC--cEEEEEcCCCceeeeeccCCC
Q 026679           75 A--------GAIKLFDSR-SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN--NIYVLDAYGGEKRCGFSLEPS  143 (235)
Q Consensus        75 d--------g~v~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~  143 (235)
                      +        ..|.+||+. ++.... .......+...+..+.|+|||+.++++..++  .|++||+.+++.......+..
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~-~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  286 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFAD-TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE  286 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEE-EEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccc-cEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc
Confidence            5        379999998 441101 1222334467889999999999777777777  677777766665443322111


Q ss_pred             C------CcceeeEEeCCCcEEEEeCCCCcEEEE--EcCCCceeeeecCCCcceeEE-EeecCCCEEEEcc----cceEE
Q 026679          144 P------NTNTEATFTPDGQYVVSGSGDGTLHAW--NINTRNEVACWNGNIGVVACL-KWAPRRAMFVAAS----SVLSF  210 (235)
Q Consensus       144 ~------~~i~~~~~~~~~~~l~~~~~dg~i~v~--d~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~----~~i~i  210 (235)
                      .      ..+..++|+|+++++++++. +.+++|  |+.+++ +..+..+...+..+ +++++..++++++    ..+.+
T Consensus       287 ~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          287 FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             ccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence            0      01457899999999999998 998998  554454 56777777777766 4443333333333    23556


Q ss_pred             eeCCCCCCCC
Q 026679          211 WIPNPSSNST  220 (235)
Q Consensus       211 w~~~~~~~~~  220 (235)
                      +++++++...
T Consensus       365 ~d~~~g~~~~  374 (662)
T 3azo_A          365 LDTVTGRART  374 (662)
T ss_dssp             EETTTCCEEE
T ss_pred             EECCCCceEE
Confidence            6665655433

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=7.8e-18  Score=125.53  Aligned_cols=198  Identities=11%  Similarity=0.054  Sum_probs=144.9

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcce-eeeeeec---------c--CCceEEEcC-CCCEEEEEe-cCCeE
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRL---------R--GRPTVAFDQ-QGLVFAVAM-EAGAI   78 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~---------~--~~~~~~~~~-~~~~l~~~~-~dg~v   78 (235)
                      +-.....++++|+|+++++...++.|++||..... .+..+..         +  ....++++| ++.++++.+ .++.|
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            44577899999999988888889999999975442 3444321         1  112399999 788888876 68999


Q ss_pred             EEEeccCCCCCCceeEeec----------CCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcc
Q 026679           79 KLFDSRSYDKGPFDTFLVG----------GDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN  147 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  147 (235)
                      ++||... ..    ...+.          .+......++++|+ +..+++...++.|++||..+++.+..+........+
T Consensus       169 ~~~~~~g-~~----~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~  243 (329)
T 3fvz_A          169 VQFSPSG-KF----VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNV  243 (329)
T ss_dssp             EEECTTS-CE----EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCE
T ss_pred             EEEcCCC-CE----EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCc
Confidence            9999432 21    22221          12234789999998 777777778899999999888888777655555668


Q ss_pred             eeeEEeCCCcEEEE-------eCCCCcEEEEEcCCCceeeeec---CCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          148 TEATFTPDGQYVVS-------GSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       148 ~~~~~~~~~~~l~~-------~~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      ..++|+| +..+.+       ...+..|++||..+++.+..+.   .+...+.+++++|+|.++++..  +.|++|+++.
T Consensus       244 ~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          244 FAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             ceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            8899999 433333       3345689999999999888873   5666789999999997666665  6699998865


Q ss_pred             C
Q 026679          216 S  216 (235)
Q Consensus       216 ~  216 (235)
                      .
T Consensus       323 ~  323 (329)
T 3fvz_A          323 K  323 (329)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.81  E-value=8.2e-18  Score=123.52  Aligned_cols=208  Identities=13%  Similarity=0.125  Sum_probs=144.5

Q ss_pred             hhhhhhcccccceeEEEeecCCC-eeEEEeccceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecCCeEEEE
Q 026679            5 RILRYFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      ..+..+..+.....+++|+|+++ +++++..++.|..||..++  ...+..+..  ..++++++++++++...++.|.+|
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ   95 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence            33445556667788999999998 7888888999999999877  444444433  338999999988777777899999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEE----ec-------------CCCcEEEEEcCCCceeeeeccCCCC
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL----TT-------------TNNNIYVLDAYGGEKRCGFSLEPSP  144 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~-------------~d~~i~~~d~~~~~~~~~~~~~~~~  144 (235)
                      |..+++...............+..++++|+|+.+++    ++             ..+.|..++.. ++... +.  ...
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~--~~~  171 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA-PI--RDR  171 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-EE--CCC
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE-ee--cCC
Confidence            987655311100000011234678999999997776    33             13467777655 44332 22  223


Q ss_pred             CcceeeEEeCCCcEEEEeCCCCcEEEEEcC-CCce---eeeecCCCcceeEEEeecCCCEEEEcccceEEeeCCCCCC
Q 026679          145 NTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TRNE---VACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSN  218 (235)
Q Consensus       145 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~~  218 (235)
                      .....++|+|+++.|++.+.++.|++|++. +++.   ...+..+...+.+++++++|+++++..+.|.+|+.++...
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g~~~  249 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDGDEL  249 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEETTEEEEECTTSCEE
T ss_pred             CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEcCCeEEEECCCCCEE
Confidence            446889999999999778888999999986 4544   2233334556789999999998887777899999875443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=1.3e-18  Score=132.28  Aligned_cols=211  Identities=9%  Similarity=0.025  Sum_probs=143.2

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce----EEEcCCCCEEEEEe-----
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQGLVFAVAM-----   73 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~-----   73 (235)
                      +++..+...+|...+..+.|+|+|+.|+.++.++.|++||+.+++....+..+....    ..++|+++.++...     
T Consensus        69 ~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~  148 (388)
T 3pe7_A           69 TQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRRED  148 (388)
T ss_dssp             TCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred             CCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcc
Confidence            445555555666666678899999999999999999999999988777666555432    34589999887532     


Q ss_pred             -----------------cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCC------CcEEEEEc
Q 026679           74 -----------------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTN------NNIYVLDA  129 (235)
Q Consensus        74 -----------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~~~d~  129 (235)
                                       .+..|.+||+.+++.     ..+..+...+..++|+| ||+.|+....+      ..|.++|.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~  223 (388)
T 3pe7_A          149 WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-----TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE  223 (388)
T ss_dssp             CCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-----EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred             cccccccchhhhhhccCCcceEEEEECCCCce-----EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence                             346799999987652     23334556788999999 99988877653      37888888


Q ss_pred             CCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-C----CcEEEEEcCCCcee--eeecCCCc---ceeEEEeecCCC
Q 026679          130 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-D----GTLHAWNINTRNEV--ACWNGNIG---VVACLKWAPRRA  199 (235)
Q Consensus       130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d----g~i~v~d~~~~~~~--~~~~~~~~---~v~~~~~~~~~~  199 (235)
                      ..++.... ........+....|+|||+.|+..+. +    ..|++||+.+++..  ..+.++..   ....+.|+|||+
T Consensus       224 ~~~~~~~l-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~  302 (388)
T 3pe7_A          224 DGTNMRKV-KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGS  302 (388)
T ss_dssp             TSCCCEES-CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEEC
T ss_pred             CCCceEEe-eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCC
Confidence            76554332 22221134778899999998765433 1    23999999988743  23332111   122347999999


Q ss_pred             EEEEc---------c--cceEEeeCCCCCCC
Q 026679          200 MFVAA---------S--SVLSFWIPNPSSNS  219 (235)
Q Consensus       200 ~l~~~---------~--~~i~iw~~~~~~~~  219 (235)
                      .|+..         .  ..|++|+++++...
T Consensus       303 ~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  333 (388)
T 3pe7_A          303 DAPVDVQDDSGYKIENDPFLYVFNMKNGTQH  333 (388)
T ss_dssp             CC------------CCCCEEEEEETTTTEEE
T ss_pred             cceeEeeeccccccCCCCEEEEEeccCCceE
Confidence            88753         2  57999999876543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=7.9e-17  Score=117.65  Aligned_cols=199  Identities=10%  Similarity=0.132  Sum_probs=144.5

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc--------CCceEEE-cCCCCEEEEEec-CCeEEEE
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR--------GRPTVAF-DQQGLVFAVAME-AGAIKLF   81 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--------~~~~~~~-~~~~~~l~~~~~-dg~v~i~   81 (235)
                      +|-....+++++++++++++...++.|.+||.+ ++....+...        ....+++ .+++.++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455678999999999988888889999999986 5555554321        1223788 467776666644 8899999


Q ss_pred             eccCCCCCCceeEee-cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           82 DSRSYDKGPFDTFLV-GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        82 d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      |.. ++.    ...+ ..+...+..++++|+|+.+++...++.|.+||. .++....+....+...+..++++|+|++++
T Consensus       106 d~~-g~~----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v  179 (286)
T 1q7f_A          106 NQY-GQF----VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFI  179 (286)
T ss_dssp             CTT-SCE----EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred             CCC-CcE----EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence            943 321    2222 223456889999999987777777899999996 455555544333334578999999999888


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecCC--CcceeEEEeecCCCEEEEcc--c-ceEEeeCCCCCC
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNGN--IGVVACLKWAPRRAMFVAAS--S-VLSFWIPNPSSN  218 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~--~-~i~iw~~~~~~~  218 (235)
                      +...++.|++||. +++.+..+..+  ...+..++++|+|+++++..  + .|.+|+.+....
T Consensus       180 ~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~  241 (286)
T 1q7f_A          180 SDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLI  241 (286)
T ss_dssp             EEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEE
T ss_pred             EECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEE
Confidence            8888999999997 56666666433  35789999999999888875  4 799999765433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=6.6e-18  Score=137.02  Aligned_cols=204  Identities=12%  Similarity=0.060  Sum_probs=140.1

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEE--eccceEEEEecCcceeeeeeeccCC--c---------eEEEc--CCCCE-EE
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSG--SLDHSVRIWDLRVNACQGILRLRGR--P---------TVAFD--QQGLV-FA   70 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~--~---------~~~~~--~~~~~-l~   70 (235)
                      ...+.+|...+..++|++++-.+++.  +.++...||....+.....+..+..  .         ...|+  |||+. |+
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            45677899999999999876566666  5578899998644433444433322  2         34455  99998 77


Q ss_pred             EEec-CCeEEEEecc--C-CCCCCceeEeecC-----CCcceeEEEEccCCCeEEEecCC----------CcEEEEEcCC
Q 026679           71 VAME-AGAIKLFDSR--S-YDKGPFDTFLVGG-----DTAEVCDIKFSNDGKSMLLTTTN----------NNIYVLDAYG  131 (235)
Q Consensus        71 ~~~~-dg~v~i~d~~--~-~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~  131 (235)
                      .+.. +..|.++++.  . +..     ..+..     +...+..++|+|||+.|++++.+          ..|++||+.+
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~-----~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVP-----RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCC-----EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             EEECCCCeEEEEcCCCCCCCCC-----EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            6654 5566666665  2 221     22223     55678899999999999988876          5899999987


Q ss_pred             ------CceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC--------CcEEEEEcC-CC---ceeeeecCCCcceeEEE
Q 026679          132 ------GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD--------GTLHAWNIN-TR---NEVACWNGNIGVVACLK  193 (235)
Q Consensus       132 ------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~v~d~~-~~---~~~~~~~~~~~~v~~~~  193 (235)
                            ++... +. ..+...+..++|+|||++|+.++.+        ..|++||+. ++   +.......+...+..+.
T Consensus       171 ~~~~~~~~~~~-l~-~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~  248 (662)
T 3azo_A          171 SAAADRSAVRE-LS-DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE  248 (662)
T ss_dssp             TTTTCGGGSEE-SS-CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred             CccccCCceeE-EE-ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence                  55432 22 0233567889999999999877644        379999998 56   44444445567899999


Q ss_pred             eecCCCEEEEcc--c--ceEEeeCCCCC
Q 026679          194 WAPRRAMFVAAS--S--VLSFWIPNPSS  217 (235)
Q Consensus       194 ~~~~~~~l~~~~--~--~i~iw~~~~~~  217 (235)
                      |+|||+++++++  +  .+.+|+.+++.
T Consensus       249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~  276 (662)
T 3azo_A          249 WAPDGSLIVATDRTGWWNLHRVDPATGA  276 (662)
T ss_dssp             ECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred             ECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence            999999777665  4  45566654544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=1.1e-18  Score=132.94  Aligned_cols=209  Identities=9%  Similarity=0.007  Sum_probs=141.1

Q ss_pred             hhhhhhhhcccccc-----eeEEEeecCCCeeEEEecc---ceEEEEecCcceeeeeeeccCC-c-eEEEcCCCCEEEEE
Q 026679            3 DNRILRYFKGHKER-----VISLCMSPVNDSFMSGSLD---HSVRIWDLRVNACQGILRLRGR-P-TVAFDQQGLVFAVA   72 (235)
Q Consensus         3 ~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~   72 (235)
                      +++.+..+..+...     +.+++|+|+|++|+.....   ..|.+||+.+++.......... . .+.|+|+++.|+.+
T Consensus        19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~   98 (396)
T 3c5m_A           19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYV   98 (396)
T ss_dssp             TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEE
T ss_pred             CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEE
Confidence            44445555554333     7889999999998776543   4688899988876555443332 2 27899999999999


Q ss_pred             ecCCeEEEEeccCCCCCCceeEeecCCCcceeE-------------------EEEccCCCeEEEe-----cCCCcEEEEE
Q 026679           73 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD-------------------IKFSNDGKSMLLT-----TTNNNIYVLD  128 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~~i~~~d  128 (235)
                      +.++.+.+||+.+++.    ......+......                   +.|+|+++.++..     ..+..|++||
T Consensus        99 ~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d  174 (396)
T 3c5m_A           99 KNELNLMKVDLETLEE----QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVD  174 (396)
T ss_dssp             ETTTEEEEEETTTCCE----EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEE
T ss_pred             EcCCcEEEEECCCCCc----EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEE
Confidence            9999999999987653    1112212221111                   3567888777654     3567899999


Q ss_pred             cCCCceeeeeccCCCCCcceeeEEeC-CCcEEEEeCCC------CcEEEEEcCCCceeeeecCC-CcceeEEEeecCCCE
Q 026679          129 AYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGD------GTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAM  200 (235)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  200 (235)
                      +.+++......   +...+..+.|+| +++.|+..+.+      ..|.+||+..++........ ...+..+.|+|+|++
T Consensus       175 ~~~g~~~~~~~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~  251 (396)
T 3c5m_A          175 IETGELEVIHQ---DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA  251 (396)
T ss_dssp             TTTCCEEEEEE---ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred             CCCCcEEeecc---CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence            98887655442   234578899999 78877665443      46889998665543333321 236888999999998


Q ss_pred             EEEcc-----cc--eEEeeCCCCCC
Q 026679          201 FVAAS-----SV--LSFWIPNPSSN  218 (235)
Q Consensus       201 l~~~~-----~~--i~iw~~~~~~~  218 (235)
                      |+.++     ..  +++|++.++..
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          252 MAYVSYFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             EEEEEEETTTCCEEEEEECTTTCCE
T ss_pred             EEEEecCCCCccceEEEEECCCCCe
Confidence            77764     23  99999876643

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=8.4e-17  Score=119.93  Aligned_cols=202  Identities=12%  Similarity=0.109  Sum_probs=146.3

Q ss_pred             ccceeEEEeecCCCeeEEEecc------------------------ceEEEEecCcceeeeeeeccC---CceEEEcCCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLD------------------------HSVRIWDLRVNACQGILRLRG---RPTVAFDQQG   66 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d------------------------~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~   66 (235)
                      -+.+.+++++|+|+++++.+.+                        ++|.+||..+++....+....   ...++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999988888777                        479999998888776554322   2239999999


Q ss_pred             CEEEEEecCCeEEEEeccCCCCCCceeEee-------cCCCcceeEEEEcc-CCCeEEEec-CCCcEEEEEcCCCceeee
Q 026679           67 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-------GGDTAEVCDIKFSN-DGKSMLLTT-TNNNIYVLDAYGGEKRCG  137 (235)
Q Consensus        67 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~~~d~~~~~~~~~  137 (235)
                      +++++...++.|++||...... .......       ..+......++++| ++..+++.+ .++.|++|| .+++....
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            9888888899999999765321 1111111       23344688999999 788777775 689999999 56666555


Q ss_pred             eccCC--------CCCcceeeEEeCC-CcEEEEeCCCCcEEEEEcCCCceeeeec--CCCcceeEEEeecCCCEEEEcc-
Q 026679          138 FSLEP--------SPNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRAMFVAAS-  205 (235)
Q Consensus       138 ~~~~~--------~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-  205 (235)
                      +....        .......++++|+ ++++++...++.|++||..+++.+..+.  .+...+..++|+| +..+.+.+ 
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~  259 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK  259 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence            43221        1133788999998 7888888889999999998888887774  4556788999999 33333322 


Q ss_pred             --------cceEEeeCCCCCC
Q 026679          206 --------SVLSFWIPNPSSN  218 (235)
Q Consensus       206 --------~~i~iw~~~~~~~  218 (235)
                              ..+++|++.....
T Consensus       260 ~~v~~~~~~~v~~~~~~~g~~  280 (329)
T 3fvz_A          260 PYFGDQEPVQGFVMNFSSGEI  280 (329)
T ss_dssp             CCTTCSCCCCEEEEETTTCCE
T ss_pred             EEeccCCCcEEEEEEcCCCeE
Confidence                    3688999766543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.79  E-value=1.6e-16  Score=116.63  Aligned_cols=201  Identities=10%  Similarity=0.014  Sum_probs=142.0

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc------CCceEEEcCCCCEEEEEec------
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR------GRPTVAFDQQGLVFAVAME------   74 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~------   74 (235)
                      .+.+..+...+.+++++|+|+++++...++.|.+||..+++........      ....++++|+|+++++...      
T Consensus        61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~  140 (296)
T 3e5z_A           61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP  140 (296)
T ss_dssp             EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred             eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence            3445566778899999999998887777789999999777654443221      1234899999998887321      


Q ss_pred             -----------CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC-CCce---eeeec
Q 026679           75 -----------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEK---RCGFS  139 (235)
Q Consensus        75 -----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~---~~~~~  139 (235)
                                 .+.|..++.. +.     ......+......++|+|+++.+++.+.++.|.+|++. +++.   ...+ 
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~-g~-----~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-  213 (296)
T 3e5z_A          141 EEGYGGEMELPGRWVFRLAPD-GT-----LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-  213 (296)
T ss_dssp             GGSSCCCCCSSSCEEEEECTT-SC-----EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-
T ss_pred             cccccccccCCCcEEEEECCC-CC-----EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-
Confidence                       2355555543 22     22233445667899999999988777778999999987 4544   2233 


Q ss_pred             cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEe-ecCCCEEEEcc-cceEEeeCCCCC
Q 026679          140 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW-APRRAMFVAAS-SVLSFWIPNPSS  217 (235)
Q Consensus       140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~-~~i~iw~~~~~~  217 (235)
                       ......+..++++++|+++++.  ++.|.+||.. ++.+..+..+.. +.+++| .|++..|.+++ +.+.-+++++..
T Consensus       214 -~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~  288 (296)
T 3e5z_A          214 -TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRG  288 (296)
T ss_dssp             -CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCB
T ss_pred             -eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEccccc
Confidence             2234556789999999977666  7889999985 777777877766 999999 58888777776 555555665554


Q ss_pred             CC
Q 026679          218 NS  219 (235)
Q Consensus       218 ~~  219 (235)
                      ++
T Consensus       289 ~~  290 (296)
T 3e5z_A          289 LE  290 (296)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.78  E-value=1.5e-16  Score=130.16  Aligned_cols=202  Identities=10%  Similarity=0.020  Sum_probs=139.1

Q ss_pred             ccccceeEEEeecCCCeeEEEeccc-----eEEEEecCcceeeeeee-ccCCceEEEcCCCCEEEEEecCCe--------
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDH-----SVRIWDLRVNACQGILR-LRGRPTVAFDQQGLVFAVAMEAGA--------   77 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~--------   77 (235)
                      +|...+..++|||||++|+.++.++     .|++||+.+++...... ......++|+|||+.|+.+..++.        
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccc
Confidence            3555788999999999988776544     89999999998765432 223445999999999999987765        


Q ss_pred             --------EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-----CCcEEEEEcCC------Cc-eeee
Q 026679           78 --------IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-----NNNIYVLDAYG------GE-KRCG  137 (235)
Q Consensus        78 --------v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~------~~-~~~~  137 (235)
                              |++|++.+.............+...+..+.|+|||++|+..+.     +..|++||+.+      +. ....
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                    9999997755322222233334556788999999999988765     56899999976      42 2333


Q ss_pred             eccCCCCCcceeeEEeCCCcEEEEeCC----CCcEEEEEcCCCce--eeeecCCCc--ceeEEEeecCCCEEEEcc--c-
Q 026679          138 FSLEPSPNTNTEATFTPDGQYVVSGSG----DGTLHAWNINTRNE--VACWNGNIG--VVACLKWAPRRAMFVAAS--S-  206 (235)
Q Consensus       138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~--~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~-  206 (235)
                      +..+.  ..+. ..|+|+|+.|+..+.    .+.|.+||+.++..  ...+..|..  .+..+.|++++.++++..  + 
T Consensus       282 l~~~~--~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~  358 (710)
T 2xdw_A          282 LIDNF--EGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK  358 (710)
T ss_dssp             EECSS--SSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             eeCCC--CcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE
Confidence            33222  2233 358899888776554    33699999987642  234444433  688899997777777765  3 


Q ss_pred             -ceEEeeCCCC
Q 026679          207 -VLSFWIPNPS  216 (235)
Q Consensus       207 -~i~iw~~~~~  216 (235)
                       .+.+|++..+
T Consensus       359 ~~l~~~~~~~g  369 (710)
T 2xdw_A          359 NTLQLHDLATG  369 (710)
T ss_dssp             EEEEEEETTTC
T ss_pred             EEEEEEECCCC
Confidence             3677777433

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=1.1e-17  Score=127.39  Aligned_cols=196  Identities=12%  Similarity=0.018  Sum_probs=132.9

Q ss_pred             eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce---------------------EEEcCCCCEEEEE---
Q 026679           17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT---------------------VAFDQQGLVFAVA---   72 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~l~~~---   72 (235)
                      ...+.|+|+|+.|+.++.++.|++||+.+++.......+....                     ..++|+++.++..   
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  162 (396)
T 3c5m_A           83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY  162 (396)
T ss_dssp             TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred             cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence            3347899999999999999999999998887665555333211                     1346666655544   


Q ss_pred             --ecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc-CCCeEEEecCC------CcEEEEEcCCCceeeeeccCCC
Q 026679           73 --MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPS  143 (235)
Q Consensus        73 --~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~  143 (235)
                        ..+..|.+||+.+++.     ..+..+...+..+.|+| +++.|+..+.+      ..|.+||+..++...... ...
T Consensus       163 ~~~~~~~l~~~d~~~g~~-----~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~  236 (396)
T 3c5m_A          163 HTNPTCRLIKVDIETGEL-----EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAE  236 (396)
T ss_dssp             HTCCCEEEEEEETTTCCE-----EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCT
T ss_pred             cCCCcceEEEEECCCCcE-----EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCC
Confidence              3566899999887553     12223556788999999 78877766543      468999987665433222 211


Q ss_pred             CCcceeeEEeCCCcEEEEeCCC-----CcEEEEEcCCCceeeeecCCCcceeEEEeec-CCCEEEEcc------------
Q 026679          144 PNTNTEATFTPDGQYVVSGSGD-----GTLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAAS------------  205 (235)
Q Consensus       144 ~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------------  205 (235)
                      ...+..++|+|+|++|+.++.+     +.|++||+.+++........ . .. +.|+| +|++++.++            
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~  313 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADS  313 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC---------
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccc
Confidence            2347788999999988776443     44999999887654332211 2 23 89999 999888642            


Q ss_pred             ------cceEEeeCCCCCCCCC
Q 026679          206 ------SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       206 ------~~i~iw~~~~~~~~~~  221 (235)
                            ..+.+|+++++....+
T Consensus       314 ~~~~~~~~i~~~d~~~~~~~~l  335 (396)
T 3c5m_A          314 YNIENDPFLYVLNTKAKSAQKL  335 (396)
T ss_dssp             -CCCCCCEEEEEETTTTBCCEE
T ss_pred             cccCCCCcEEEEecccCceEEc
Confidence                  5699999877655433

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=2e-16  Score=119.28  Aligned_cols=180  Identities=9%  Similarity=0.058  Sum_probs=121.6

Q ss_pred             cceeEEEeecCCCeeEEEec--cceEEEEecCcceeeee-eeccCCceEEEcCCC-CEEEEEecCCeEEEEeccC-----
Q 026679           15 ERVISLCMSPVNDSFMSGSL--DHSVRIWDLRVNACQGI-LRLRGRPTVAFDQQG-LVFAVAMEAGAIKLFDSRS-----   85 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~-~~l~~~~~dg~v~i~d~~~-----   85 (235)
                      .....++++|+|++|+++..  +++|.+||+.+++.+.. +.......+.+.|++ ..+++.+.||.+.+|+...     
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~  187 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA  187 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence            34567899999999998864  58999999999987776 543322113334432 3344444444444444322     


Q ss_pred             -------------------------------------------CCCCCceeEeecC--------CCcceeEEEEccCCCe
Q 026679           86 -------------------------------------------YDKGPFDTFLVGG--------DTAEVCDIKFSNDGKS  114 (235)
Q Consensus        86 -------------------------------------------~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~  114 (235)
                                                                 .............        .......++++|+++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~  267 (361)
T 2oiz_A          188 SQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR  267 (361)
T ss_dssp             EEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE
T ss_pred             eeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCe
Confidence                                                       1100000000000        0011112788999888


Q ss_pred             EEEecC-----------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC--ceeee
Q 026679          115 MLLTTT-----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR--NEVAC  181 (235)
Q Consensus       115 l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~  181 (235)
                      ++++..           .+.|.+||+.+++.+..+....    +..++|+|+|++|++++. +.|.+||..++  +.+..
T Consensus       268 lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          268 MYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             EEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred             EEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence            777643           3479999999999888776553    788999999999998887 99999999999  88888


Q ss_pred             ecCCCcceeEEEeecCCC
Q 026679          182 WNGNIGVVACLKWAPRRA  199 (235)
Q Consensus       182 ~~~~~~~v~~~~~~~~~~  199 (235)
                      +..+......++++|+|.
T Consensus       343 i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          343 IEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ETTSCSSEEEEEECCCSC
T ss_pred             eccCCCCcEEEEecCCCC
Confidence            766777889999999985

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.76  E-value=2.6e-16  Score=117.19  Aligned_cols=207  Identities=10%  Similarity=0.038  Sum_probs=144.8

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC------Cce-EEEcCCCCEEEEEe--
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG------RPT-VAFDQQGLVFAVAM--   73 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~------~~~-~~~~~~~~~l~~~~--   73 (235)
                      +++.+.++.. ......++++++++.+++...++.|.+||..+++....+....      .+. +++ . +..++++.  
T Consensus        73 t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~  149 (328)
T 3dsm_A           73 TFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWS  149 (328)
T ss_dssp             TCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECT
T ss_pred             ccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCC
Confidence            4555566643 3567889999988544444478999999999998887776544      333 666 3 44455544  


Q ss_pred             cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC----------CcEEEEEcCCCceeeeeccCCC
Q 026679           74 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN----------NNIYVLDAYGGEKRCGFSLEPS  143 (235)
Q Consensus        74 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~~~~~~~  143 (235)
                      .++.|.++|+.+.+.    ...... ......++++|+|+.++++..+          +.|.++|..+++....+.....
T Consensus       150 ~~~~v~viD~~t~~~----~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g  224 (328)
T 3dsm_A          150 YQNRILKIDTETDKV----VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG  224 (328)
T ss_dssp             TCCEEEEEETTTTEE----EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT
T ss_pred             CCCEEEEEECCCCeE----EEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC
Confidence            488999999987653    222221 2345678899999876666554          7899999999887766655322


Q ss_pred             CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeee--ecCCCcceeEEEeec-CCCEEEEc----c--cceEEeeCC
Q 026679          144 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC--WNGNIGVVACLKWAP-RRAMFVAA----S--SVLSFWIPN  214 (235)
Q Consensus       144 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~----~--~~i~iw~~~  214 (235)
                       .....++|+|+++.|+++..  .|.+||..+++....  +.........++++| ++.++++.    .  +.|.+|+.+
T Consensus       225 -~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          225 -DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             -CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             -CCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence             24788999999999888765  899999988776422  222245788999999 66666665    3  779999988


Q ss_pred             CCCCCC
Q 026679          215 PSSNST  220 (235)
Q Consensus       215 ~~~~~~  220 (235)
                      ...+..
T Consensus       302 g~~~~~  307 (328)
T 3dsm_A          302 GKLIDE  307 (328)
T ss_dssp             CCEEEE
T ss_pred             CCEEEE
Confidence            443333

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.75  E-value=1.1e-16  Score=120.36  Aligned_cols=172  Identities=12%  Similarity=0.072  Sum_probs=131.5

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcce-----------eeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEecc
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-----------CQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~   84 (235)
                      +++.+++++...++++|+.++ +++|+++..+           ............++|  +++.|+++ .++.|++||++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence            689999999999999999985 6679876443           112333334444888  89999999 88999999998


Q ss_pred             CCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           85 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                      +...    ......+...+.++.+.+.  .+++++.||.|.+||+.+++...      ....|++++|+|+|  ++.|..
T Consensus       115 sl~~----~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~------~~~~Vs~v~WSpkG--~~vg~~  180 (388)
T 1xip_A          115 ELSE----FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ------LAQNVTSFDVTNSQ--LAVLLK  180 (388)
T ss_dssp             STTC----EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE------EEESEEEEEECSSE--EEEEET
T ss_pred             hhhc----cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc------ccCCceEEEEcCCc--eEEEEc
Confidence            8663    2233445567887777654  38889999999999999877643      12359999999999  678889


Q ss_pred             CCcEEEEEcCCCce--eeee------c---CCCcceeEEEeecCCCEEEEcc
Q 026679          165 DGTLHAWNINTRNE--VACW------N---GNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       165 dg~i~v~d~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      ||.+++|+...++.  ..++      .   +|...|.++.|.+++.++++-.
T Consensus       181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            99999999877664  4455      2   3678999999999999998753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.75  E-value=1.9e-16  Score=129.17  Aligned_cols=198  Identities=8%  Similarity=0.022  Sum_probs=132.8

Q ss_pred             ccccceeEEEeecCCCeeE-----EEeccceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecCCe-------
Q 026679           12 GHKERVISLCMSPVNDSFM-----SGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGA-------   77 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~-----s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~-------   77 (235)
                      +|...+.+++|||||++||     .|+.+..|++||+.+++..........  ..++|+|||+.|+.++.+..       
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            4666789999999999988     444456899999999876511122222  45999999999999988765       


Q ss_pred             ------EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC----cEEEEEcCCCceeeeeccCCCCCcc
Q 026679           78 ------IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN----NIYVLDAYGGEKRCGFSLEPSPNTN  147 (235)
Q Consensus        78 ------v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~~~i  147 (235)
                            |++|++.+.............+...+..+.|+|||++|+..+.++    .|++++..+++... +..+.  ..+
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~--~~~  274 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGV--GAK  274 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECS--SCC
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCC--Cce
Confidence                  999999876532223333344556788999999999998887666    67777765554433 22222  234


Q ss_pred             eeeEEeCCCcEEEEeC---CCCcEEEEEcCCCce---eeeecCC-CcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          148 TEATFTPDGQYVVSGS---GDGTLHAWNINTRNE---VACWNGN-IGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       148 ~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~---~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      ....+ ++|++++...   .++.|.+||+.+++.   ...+..+ ...+..++|+ ++.++++..  +..++|.++
T Consensus       275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            55555 5666444444   257899999977653   2333333 4568888888 566666665  555666443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.75  E-value=1.3e-15  Score=110.60  Aligned_cols=182  Identities=12%  Similarity=0.090  Sum_probs=141.7

Q ss_pred             CCeeEEEeccceEEEEecCcceeeeeeeccC---CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCC-Cc
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TA  101 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-~~  101 (235)
                      ++.|++++.|+.|.+||.++++.+..+..+.   ...+.+.|+|++++  +.++.|..||. +++.    ...+... ..
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~----~W~~~~~~~~   77 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE----LWNIAAPAGC   77 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE----EEEEECCTTC
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE----EEEEcCCCCc
Confidence            6789999999999999999999999988764   45589999999888  45778999998 5443    3333332 34


Q ss_pred             ceeEEEEccCCCeEEEecC-CCcEEEEEcCCCceeeeeccCCC----CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC
Q 026679          102 EVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPS----PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR  176 (235)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  176 (235)
                      .+.++.+.|+|+.+++.+. ++.|..+|. +++.+..+.....    ......+++.++|+++++...++.|..||.. |
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence            6788999999999998877 788888885 6777666654321    1234557889999999999999999999987 9


Q ss_pred             ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          177 NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       177 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +.+.++... ..+.++...+++.+++++.  +.+..+|.++++
T Consensus       156 ~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          156 QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred             CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence            998888754 4566788899999998876  458888887443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=3e-15  Score=111.59  Aligned_cols=202  Identities=8%  Similarity=0.055  Sum_probs=139.4

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecC----CeEEEEe
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEA----GAIKLFD   82 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d----g~v~i~d   82 (235)
                      .+..+...+.+++|+|++++++++..++.|.+||.++++.........  ...++++|+++++++...+    +.|.+||
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence            445566677899999999988888889999999998877655443222  3348999999988877666    6899999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG  156 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  156 (235)
                      ..+.....  ..........+..++++|+|+.+++...      .+.|..+|..+++......   ....+..++|+|++
T Consensus       119 ~~~~~~~~--~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          119 ENGDNLQD--IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ---NISVANGIALSTDE  193 (333)
T ss_dssp             TTSCSCEE--EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE---EESSEEEEEECTTS
T ss_pred             CCCCEEEE--EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec---CCCcccceEECCCC
Confidence            87755310  1111123456889999999987766543      3567777766554433221   11236789999999


Q ss_pred             cEEE-EeCCCCcEEEEEcCC-Cceeee--------ecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          157 QYVV-SGSGDGTLHAWNINT-RNEVAC--------WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       157 ~~l~-~~~~dg~i~v~d~~~-~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      +.|+ +.+.++.|.+||+.+ +..+..        +.++ ..+..++++++|+++++..  +.|.+|+.+..
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~  264 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY  264 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSC
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCC
Confidence            8664 445678999999863 333221        1222 4678899999999887763  67999998654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.74  E-value=3.7e-15  Score=107.78  Aligned_cols=195  Identities=12%  Similarity=0.082  Sum_probs=137.0

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc---CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR---GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~   91 (235)
                      ..+.+++++++++++++.. ++.|.+||....... .+...   ....++++++++++++...++.|.+|+..+...   
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---  141 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---  141 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC---
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee---
Confidence            5678899999988666655 889999998655432 22211   123489999999887777788999997654332   


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW  171 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  171 (235)
                       ..........+..++++++|+.+++...++.|.+||...........  .....+..++++++|.++++...++.|.+|
T Consensus       142 -~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~  218 (270)
T 1rwi_B          142 -TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKL  218 (270)
T ss_dssp             -EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred             -EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence             11122223457889999999877776778899999987665433211  222457889999999888888788899999


Q ss_pred             EcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          172 NINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       172 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      |............+...+.+++++|+|+++++..  +.|+++++...+
T Consensus       219 ~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          219 LAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             cCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            9865543332223335689999999998777765  678998876543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.73  E-value=7.7e-15  Score=109.26  Aligned_cols=196  Identities=9%  Similarity=0.026  Sum_probs=140.3

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF   94 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~   94 (235)
                      ....+.+. +++.+++...++.|.+||..+++.+..+.....+. ++++++++.+++...++.|.+||..+.+..  ...
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~--~~i  121 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT--GYI  121 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE--EEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE--EEE
Confidence            45677775 34556666678999999999999888886444333 888898855444448899999999876531  112


Q ss_pred             eecC---CCcceeEEEEccCCCeEEEec--CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC----
Q 026679           95 LVGG---DTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD----  165 (235)
Q Consensus        95 ~~~~---~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----  165 (235)
                      ....   .......+++ . +..++++.  .++.|.++|+.+++....+....   ....++++|+|++++++..+    
T Consensus       122 ~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~---~p~~i~~~~dG~l~v~~~~~~~~~  196 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGI---QPTSLVMDKYNKMWTITDGGYEGS  196 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSS---CBCCCEECTTSEEEEEBCCBCTTC
T ss_pred             EcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC---CccceEEcCCCCEEEEECCCccCC
Confidence            2211   0114456677 3 44455554  48899999999998877766533   25678999999988777665    


Q ss_pred             ------CcEEEEEcCCCceeeeecCC-CcceeEEEeecCCCEEEEcccceEEeeCCCCCCC
Q 026679          166 ------GTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNS  219 (235)
Q Consensus       166 ------g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~~~  219 (235)
                            +.|.++|..+++....+... ...+..++|+|+++.+.++.+.+.+||.++.+..
T Consensus       197 ~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~~v~~~d~~t~~~~  257 (328)
T 3dsm_A          197 PYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVP  257 (328)
T ss_dssp             SSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESSSEEEEETTCSSCC
T ss_pred             ccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEccEEEEEECCCCcee
Confidence                  78999999988877666532 2368999999999998888778999998776653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.73  E-value=6.6e-16  Score=115.15  Aligned_cols=194  Identities=13%  Similarity=0.120  Sum_probs=136.2

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~   91 (235)
                      +..|.++.|++++..++..+.++.++.|   .++....+..+.  ...++|++++++++++..++.|.+||..+++.   
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---   78 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---   78 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---
T ss_pred             ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---
Confidence            3568889999988888877888999999   334444444333  23489999999888888899999999877543   


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCC----CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC---
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTN----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---  164 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---  164 (235)
                       ......+...+.+++++|+|+.+++...+    +.|.+||..++.....+........+..++++|+|+++++...   
T Consensus        79 -~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  157 (333)
T 2dg1_A           79 -KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS  157 (333)
T ss_dssp             -EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred             -EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence             22222345679999999999877776665    6899999887765433322223346889999999998877654   


Q ss_pred             ---CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          165 ---DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       165 ---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                         .+.|..+|..+++... +......+..++|+|+++.++.+.   +.|.+|+++.
T Consensus       158 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          158 TNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             TBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence               3557777765544432 222334578999999998665443   6799999853

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.72  E-value=3.1e-15  Score=122.39  Aligned_cols=198  Identities=9%  Similarity=0.032  Sum_probs=139.6

Q ss_pred             ceeEEEeecCCCeeEEEeccce----------------EEEEecCcceee--eeeecc--CC--ceEEEcCCCCEEEEEe
Q 026679           16 RVISLCMSPVNDSFMSGSLDHS----------------VRIWDLRVNACQ--GILRLR--GR--PTVAFDQQGLVFAVAM   73 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~----------------i~vwd~~~~~~~--~~~~~~--~~--~~~~~~~~~~~l~~~~   73 (235)
                      .+..++|+|||+.|+.++.++.                |++|++.+++..  ..+...  ..  ..+.|+|+|++|+..+
T Consensus       172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~  251 (710)
T 2xdw_A          172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (710)
T ss_dssp             CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence            3678999999999998888766                999999877632  222322  22  2489999999988877


Q ss_pred             c-----CCeEEEEeccC------CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC----CcEEEEEcCCCce--ee
Q 026679           74 E-----AGAIKLFDSRS------YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN----NNIYVLDAYGGEK--RC  136 (235)
Q Consensus        74 ~-----dg~v~i~d~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~--~~  136 (235)
                      .     +..+.+||+.+      +.. .  ...+..+...+.. .|+|+|+.|+..+..    ..|.+||+.+++.  ..
T Consensus       252 ~~~~~~~~~l~~~d~~~~~~~~~~~~-~--~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~  327 (710)
T 2xdw_A          252 REGCDPVNRLWYCDLQQESNGITGIL-K--WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK  327 (710)
T ss_dssp             ECSSSSCCEEEEEEGGGSSSSSCSSC-C--CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred             EccCCCccEEEEEECcccccccCCcc-c--eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccce
Confidence            5     56899999976      321 1  2223334444443 488999988876653    3699999987642  22


Q ss_pred             eeccCCCCCcceeeEEeCCCcEEEEeCCCCc--EEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEc--c----cce
Q 026679          137 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGT--LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA--S----SVL  208 (235)
Q Consensus       137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~----~~i  208 (235)
                      .+..+.....+..++|++++.++++...++.  |++||+.+++.+..+..+.+.+..+.++|++..++..  +    +.+
T Consensus       328 ~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i  407 (710)
T 2xdw_A          328 VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGII  407 (710)
T ss_dssp             EEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred             eccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEE
Confidence            2332322235778899988888888888874  6677876788777787777889999999998766533  2    569


Q ss_pred             EEeeCCCCC
Q 026679          209 SFWIPNPSS  217 (235)
Q Consensus       209 ~iw~~~~~~  217 (235)
                      ..||+.+++
T Consensus       408 ~~~d~~tg~  416 (710)
T 2xdw_A          408 YHCDLTKEE  416 (710)
T ss_dssp             EEEETTSSS
T ss_pred             EEEECCCCc
Confidence            999987765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.72  E-value=2.9e-15  Score=108.75  Aligned_cols=194  Identities=12%  Similarity=0.069  Sum_probs=148.4

Q ss_pred             chhhhhhhhcccc-cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC---CceEEEcCCCCEEEEEec-CC
Q 026679            2 YDNRILRYFKGHK-ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAVAME-AG   76 (235)
Q Consensus         2 ~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-dg   76 (235)
                      ++|+.+.++..+. ..+.++.++|+|++++  +.++.|..||. +++.+..+..+.   ...+.+.++|+++++.+. ++
T Consensus        23 ~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~   99 (276)
T 3no2_A           23 DTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPS   99 (276)
T ss_dssp             TTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred             CCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCC
Confidence            4778888888776 5789999999999888  35778999998 888888887653   223788999999999887 77


Q ss_pred             eEEEEeccCCCCCCceeEeec----CCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEE
Q 026679           77 AIKLFDSRSYDKGPFDTFLVG----GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF  152 (235)
Q Consensus        77 ~v~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~  152 (235)
                      .+..+|.. ++.  .....+.    .+......+++.++|+++++...++.|..||.. ++.+..+....   .+..+..
T Consensus       100 ~v~~vd~~-Gk~--l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~---~~~~~~~  172 (276)
T 3no2_A          100 TILEVNMK-GEV--LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG---TPFSSAF  172 (276)
T ss_dssp             EEEEECTT-SCE--EEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS---CCCEEEE
T ss_pred             EEEEEeCC-CCE--EEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC---CccceeE
Confidence            78777753 221  1222221    122345566788999999999999999999987 88887776543   3556788


Q ss_pred             eCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCC------cceeEEEeecCCCEEEEcc
Q 026679          153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI------GVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~  205 (235)
                      .++|+.++++..++.|..+|..+++.+.++..+.      ..+..+...++|.++++..
T Consensus       173 ~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          173 LDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             cCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            8999999999988899999999899988875332      2378888899999988874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=8e-16  Score=115.27  Aligned_cols=181  Identities=10%  Similarity=0.119  Sum_probs=123.2

Q ss_pred             cceeEEEeecCCCeeEEEeccc-----eEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecC--------------
Q 026679           15 ERVISLCMSPVNDSFMSGSLDH-----SVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEA--------------   75 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------   75 (235)
                      ..+..++|+|||++|+.++.++     .|.+||+.+++.......+....++|+|+++.|+.++.+              
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            4577899999999998877542     488888888876665554444448999999998888642              


Q ss_pred             -------------CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC---------cEEEEEcCCCc
Q 026679           76 -------------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN---------NIYVLDAYGGE  133 (235)
Q Consensus        76 -------------g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------~i~~~d~~~~~  133 (235)
                                   ..|.+||+.+++.    ...+.. . .+..++|+|+| .++++..++         .|.++|  +++
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~~----~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~  209 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEEV----IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK  209 (347)
T ss_dssp             CC---------CEEEEEEEETTTTEE----EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE
T ss_pred             eeecCcccccCccceEEEEECCCCeE----EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCc
Confidence                         5788899876542    112222 2 67889999999 777665432         355555  554


Q ss_pred             eeeeeccCCCCCcceeeEEeCCCcEEEEeCCC--------CcEEEEEcCCCceeeeecCCCcceeE-EEeecCCCEEEEc
Q 026679          134 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD--------GTLHAWNINTRNEVACWNGNIGVVAC-LKWAPRRAMFVAA  204 (235)
Q Consensus       134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~  204 (235)
                      ...... .   ..+..  ++|+|++|+.++.+        ..|++||  +++.......+...+.. +.|+ ++ +++++
T Consensus       210 ~~~l~~-~---~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~  279 (347)
T 2gop_A          210 EEKMFE-K---VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTL  279 (347)
T ss_dssp             EEEEEE-E---ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEE
T ss_pred             eEEecc-C---cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEE
Confidence            433222 2   23433  39999988876643        3688888  56655555566678886 9999 88 77666


Q ss_pred             c--cceEEeeCCC
Q 026679          205 S--SVLSFWIPNP  215 (235)
Q Consensus       205 ~--~~i~iw~~~~  215 (235)
                      +  +..++| ++.
T Consensus       280 ~~~~~~~l~-~~~  291 (347)
T 2gop_A          280 FEEGSVNLY-IWD  291 (347)
T ss_dssp             EETTEEEEE-EES
T ss_pred             ecCCcEEEE-EcC
Confidence            5  778999 763

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.71  E-value=1.7e-14  Score=104.29  Aligned_cols=196  Identities=11%  Similarity=0.079  Sum_probs=134.5

Q ss_pred             ceeEEEeecCCCeeE-EEeccceEEEEecCcceeeeeeec--cCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679           16 RVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRL--RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD   92 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~   92 (235)
                      ...+++++++|++++ +...++.|.+||..+.........  .....++++++++++++.. ++.|.+||......    
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~----   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ----   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC----
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE----
Confidence            678899999998776 546788999999765543222111  1233499999999666655 88999999876432    


Q ss_pred             eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679           93 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN  172 (235)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  172 (235)
                      ..........+..++++|+|+.+++...++.|.+|+..+......  .......+..++++|+|+++++...++.|.+||
T Consensus       100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~  177 (270)
T 1rwi_B          100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE  177 (270)
T ss_dssp             EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--ccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence            111112235688999999998777777788999997655433221  122223578899999999777777788999999


Q ss_pred             cCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          173 INTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      ............+...+.+++++++|.++++..  +.|.+|+.++...
T Consensus       178 ~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          178 AESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             TTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             cCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            876655443333336788999999997777764  6799999876543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.70  E-value=4.3e-15  Score=111.25  Aligned_cols=179  Identities=8%  Similarity=0.045  Sum_probs=120.1

Q ss_pred             eeEEEeecCCCeeEEEec---------------------------cceEEEEecCcceeeeeeeccCCceEEEcCCCCEE
Q 026679           17 VISLCMSPVNDSFMSGSL---------------------------DHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVF   69 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~---------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l   69 (235)
                      +..++|+|+|+.|+.++.                           ...|.+||+.+++.+..+.......++|+|++ ++
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~  184 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IV  184 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EE
Confidence            899999999998888764                           25799999988876333333344559999999 77


Q ss_pred             EEEecCC-------eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC--------CcEEEEEcCCCce
Q 026679           70 AVAMEAG-------AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN--------NNIYVLDAYGGEK  134 (235)
Q Consensus        70 ~~~~~dg-------~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~  134 (235)
                      +++..++       ...+|.+.+++     ...+..+ ..+..+  +|+|+.|+.++.+        ..|.+||  +++.
T Consensus       185 ~~~~~~~~~~~~~~~~~l~~~d~~~-----~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~  254 (347)
T 2gop_A          185 VNVPHREIIPQYFKFWDIYIWEDGK-----EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV  254 (347)
T ss_dssp             EEEECCCSSCCSSCCEEEEEEETTE-----EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE
T ss_pred             EEEecccccccccccccEEEeCCCc-----eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce
Confidence            7776542       44555554222     1122222 344443  9999998887754        3688888  5544


Q ss_pred             eeeeccCCCCCccee-eEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cc-eEE
Q 026679          135 RCGFSLEPSPNTNTE-ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SV-LSF  210 (235)
Q Consensus       135 ~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~-i~i  210 (235)
                      ....  ..+...+.. +.|+ ++ ++++++.++.+++| +.+++... +..+...|.+++|+|  .++++++  +. ..+
T Consensus       255 ~~l~--~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l  326 (347)
T 2gop_A          255 MGIL--DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKETATRLREL  326 (347)
T ss_dssp             EESS--TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEECSSSCCEE
T ss_pred             Eecc--ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcCCCChHHh
Confidence            3322  233456775 8999 88 88899999999999 87665543 334577899999999  5555554  33 377


Q ss_pred             eeCC
Q 026679          211 WIPN  214 (235)
Q Consensus       211 w~~~  214 (235)
                      |.++
T Consensus       327 ~~~~  330 (347)
T 2gop_A          327 FTWD  330 (347)
T ss_dssp             EEES
T ss_pred             eEeC
Confidence            7766

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.69  E-value=2.3e-14  Score=113.60  Aligned_cols=211  Identities=10%  Similarity=0.074  Sum_probs=146.4

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecC--cceeeeeeeccCCce-EEEc----CCCCEEEEEec-
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR--VNACQGILRLRGRPT-VAFD----QQGLVFAVAME-   74 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~~-~~~~----~~~~~l~~~~~-   74 (235)
                      +++.+..+... ..+..+.|+|||+++++++.|+.|.+||+.  +++.+..+.....+. ++++    |+|++++++.. 
T Consensus       186 t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~  264 (567)
T 1qks_A          186 TYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW  264 (567)
T ss_dssp             TCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             CCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEcc
Confidence            45555555533 346689999999999999999999999995  777777777655444 8999    69998887765 


Q ss_pred             CCeEEEEeccCCCCCCceeEeec--------------------C---------------------------------CCc
Q 026679           75 AGAIKLFDSRSYDKGPFDTFLVG--------------------G---------------------------------DTA  101 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~~~~~~~--------------------~---------------------------------~~~  101 (235)
                      ++.+.++|..+.+...  .....                    .                                 ...
T Consensus       265 ~~~v~ViD~~t~~~~~--~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~  342 (567)
T 1qks_A          265 PPQYVIMDGETLEPKK--IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER  342 (567)
T ss_dssp             TTEEEEEETTTCCEEE--EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred             CCeEEEEECCCCcEEE--EEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccc
Confidence            5899999976644211  11100                    0                                 011


Q ss_pred             ceeEEEEccCCCeEEEec-CCCcEEEEEcCCCceeeeecc-CCCCCcceeeE-EeCCCcEE-EEeC-CCCcEEEEEcCC-
Q 026679          102 EVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSL-EPSPNTNTEAT-FTPDGQYV-VSGS-GDGTLHAWNINT-  175 (235)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~-~~~~~~i~~~~-~~~~~~~l-~~~~-~dg~i~v~d~~~-  175 (235)
                      ....+.|+|++++++++. .++.|.++|+.+++....... ...+.+-.... ++|++..+ +++. .++.|.++|..+ 
T Consensus       343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~  422 (567)
T 1qks_A          343 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  422 (567)
T ss_dssp             SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence            233568999999887665 578899999999988776655 22222112233 58874444 4543 468999999987 


Q ss_pred             ------CceeeeecCCCcceeEEEeecCCCEEEEcc---------cceEEeeCCCC
Q 026679          176 ------RNEVACWNGNIGVVACLKWAPRRAMFVAAS---------SVLSFWIPNPS  216 (235)
Q Consensus       176 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~~i~iw~~~~~  216 (235)
                            .+.+.++......-..+..+|+++++.+..         +.|.++|+++.
T Consensus       423 ~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          423 GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence                  566777765544445678999999888754         37999998765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.67  E-value=1.6e-14  Score=118.69  Aligned_cols=196  Identities=9%  Similarity=-0.028  Sum_probs=127.5

Q ss_pred             cccceeEEEeecCCCeeEEEecc-----ceEEEEecCcceeeeeeecc-CCceEEEcCCCCEEEEEecCCe---------
Q 026679           13 HKERVISLCMSPVNDSFMSGSLD-----HSVRIWDLRVNACQGILRLR-GRPTVAFDQQGLVFAVAMEAGA---------   77 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~---------   77 (235)
                      |...+..++|||||++|+.++.+     ..|++||+.+++.+...... ....++|+|| +.|+.+..++.         
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            44478899999999998877654     46999999998875532111 1245899999 98888876554         


Q ss_pred             -----EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC-----cEEEEEcCCC--ceeeeeccCCCCC
Q 026679           78 -----IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-----NIYVLDAYGG--EKRCGFSLEPSPN  145 (235)
Q Consensus        78 -----v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~--~~~~~~~~~~~~~  145 (235)
                           |++|++.+.............+...+..+.|+|||++|+..+.++     .|++||+.++  +....+....  .
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~  317 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL--K  317 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS--S
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC--C
Confidence                 888998765432222232233334588999999999988877543     8999999876  3122332222  2


Q ss_pred             cceeeEEeCCCcEEEEeCC----CCcEEEEEcCCC--ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          146 TNTEATFTPDGQYVVSGSG----DGTLHAWNINTR--NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      ..... ++|+|+.|+..+.    ++.|.+||+.++  +....+..+...+..+.|+ ++.++++..  +..+||.+
T Consensus       318 ~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          318 AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            23333 4588888877655    345999999874  3334444455567778887 455555554  45555544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=9.1e-14  Score=110.23  Aligned_cols=189  Identities=11%  Similarity=-0.030  Sum_probs=140.5

Q ss_pred             cCCCeeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEEecCCeEEEEecc--CCCCCCceeEeecCCC
Q 026679           24 PVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAMEAGAIKLFDSR--SYDKGPFDTFLVGGDT  100 (235)
Q Consensus        24 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~~~  100 (235)
                      |.+..+++...+++|.++|..+++.+..+..... ..+.++|+++++++++.++.|.+||+.  +.+.    ...... .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~----v~~i~~-G  239 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT----VAEIKI-G  239 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE----EEEEEC-C
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE----eEEEec-C
Confidence            4445677778899999999999999888876544 359999999999999999999999996  4332    222222 2


Q ss_pred             cceeEEEEc----cCCCeEEEecC-CCcEEEEEcCCCceeeeeccCC--------C-CCcceeeEEeCCCcE-EEEeCCC
Q 026679          101 AEVCDIKFS----NDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEP--------S-PNTNTEATFTPDGQY-VVSGSGD  165 (235)
Q Consensus       101 ~~v~~~~~~----~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~--------~-~~~i~~~~~~~~~~~-l~~~~~d  165 (235)
                      .....++|+    |||++++++.. ++.+.++|..+.+.+..+....        + ...+..+..++++.. ++....+
T Consensus       240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~  319 (567)
T 1qks_A          240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  319 (567)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence            346789999    69998887765 6899999999998887765432        1 124677888887554 4556678


Q ss_pred             CcEEEEEcCCCceee--eecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679          166 GTLHAWNINTRNEVA--CWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN  218 (235)
Q Consensus       166 g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~  218 (235)
                      |.|.++|..+.+.+.  .+. .......+.|+|++++++++.   +.|.++|.++.++
T Consensus       320 g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl  376 (567)
T 1qks_A          320 GKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL  376 (567)
T ss_dssp             TEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred             CeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence            999999987654322  222 234567889999999988775   6799999987654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.65  E-value=2.7e-13  Score=102.50  Aligned_cols=211  Identities=10%  Similarity=-0.019  Sum_probs=132.3

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEe----------ccceEEEEecCcceeeeeeecc---------CCceEEEc
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGS----------LDHSVRIWDLRVNACQGILRLR---------GRPTVAFD   63 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~---------~~~~~~~~   63 (235)
                      +++.+..+.....+  .++++|||++++.+.          .++.|.+||..+.+.+..+...         ....++++
T Consensus        56 t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s  133 (373)
T 2mad_H           56 SGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT  133 (373)
T ss_pred             CCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC
Confidence            45555555543344  899999999988875          3678999999988887776543         12248999


Q ss_pred             CCCCEEEEEec--CCeEEEEeccCCCCCCcee-EeecCC----------------Cc---------ce------------
Q 026679           64 QQGLVFAVAME--AGAIKLFDSRSYDKGPFDT-FLVGGD----------------TA---------EV------------  103 (235)
Q Consensus        64 ~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~-~~~~~~----------------~~---------~v------------  103 (235)
                      |+|++|+++..  ++.|.++| .+++...  . ......                .+         .+            
T Consensus       134 pDG~~l~v~n~~~~~~v~viD-~t~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~  210 (373)
T 2mad_H          134 PNNADLLFFQFAAGPAVGLVV-QGGSSDD--QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA  210 (373)
T ss_pred             CCCCEEEEEecCCCCeEEEEE-CCCCEEe--EEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccC
Confidence            99999998874  57899999 7765311  1 111000                00         00            


Q ss_pred             -----eEEEEccCCCeEEEecCCCcEEEEEcCCCce--eeeeccCC--------CCCcceeeEEeCCCcEEEEeCC----
Q 026679          104 -----CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK--RCGFSLEP--------SPNTNTEATFTPDGQYVVSGSG----  164 (235)
Q Consensus       104 -----~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~----  164 (235)
                           ....+.+++..++..+..+.+.+.|+.....  ...+....        .+.....+.++|+++.++++..    
T Consensus       211 ~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~  290 (373)
T 2mad_H          211 AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA  290 (373)
T ss_pred             CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence                 0011222222223233445566666544321  11111100        0122334788999888877543    


Q ss_pred             ------CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCC-EEEEcc---cceEEeeCCCCCCC
Q 026679          165 ------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPSSNS  219 (235)
Q Consensus       165 ------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~---~~i~iw~~~~~~~~  219 (235)
                            .+.|.++|..+++.+..+.. .....+++|+|||+ .++++.   +.+.+||..+.+..
T Consensus       291 ~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          291 WKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             ccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence                  35799999999999888863 34689999999999 666654   77999999876654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=1.6e-14  Score=117.97  Aligned_cols=195  Identities=10%  Similarity=0.028  Sum_probs=130.5

Q ss_pred             eEEEeecCCCeeEEEeccce-------------EEEEecCcceee--eeeec--cCC--ceEEEcCCCCEEEEEecCC--
Q 026679           18 ISLCMSPVNDSFMSGSLDHS-------------VRIWDLRVNACQ--GILRL--RGR--PTVAFDQQGLVFAVAMEAG--   76 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~d~~-------------i~vwd~~~~~~~--~~~~~--~~~--~~~~~~~~~~~l~~~~~dg--   76 (235)
                      ..++|+|||+.|+.++.|..             |++|++.++...  ..+..  +..  ..+.|+|+|++|+.++.++  
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            68899999999999988776             999999887632  23332  212  2388999999988887665  


Q ss_pred             --eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC----CCcEEEEEcCCCce--eeeeccCCCCCcce
Q 026679           77 --AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEK--RCGFSLEPSPNTNT  148 (235)
Q Consensus        77 --~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~--~~~~~~~~~~~~i~  148 (235)
                        .+.+++..+...     ..+..+...+....+ ++|. ++..+.    ++.|.+||+.+++.  ...+..+.....+.
T Consensus       251 ~~~l~~~~~~~~~~-----~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~  323 (695)
T 2bkl_A          251 ENDVYWKRPGEKDF-----RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLL  323 (695)
T ss_dssp             EEEEEEECTTCSSC-----EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEE
T ss_pred             ceEEEEEcCCCCce-----EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEE
Confidence              566665443321     222233344555556 6676 555443    57899999987653  12222222234577


Q ss_pred             eeEEeCCCcEEEEeCCCCcEEEEEcC-CCceeeeecCC-CcceeEEEeecCCCEEEEcc------cceEEeeCCCCCCCC
Q 026679          149 EATFTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNGN-IGVVACLKWAPRRAMFVAAS------SVLSFWIPNPSSNST  220 (235)
Q Consensus       149 ~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~------~~i~iw~~~~~~~~~  220 (235)
                      .++|+ ++.++++...|+..++|.+. +++....+..+ .+.+..++++|++..++...      +.+++||+.+++...
T Consensus       324 ~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~  402 (695)
T 2bkl_A          324 SVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSEL  402 (695)
T ss_dssp             EEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred             EEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEE
Confidence            78888 67788888889988877664 45555556544 56788899999987766332      569999998765433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.64  E-value=8.6e-13  Score=96.52  Aligned_cols=196  Identities=8%  Similarity=0.066  Sum_probs=140.2

Q ss_pred             hcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee-eccC--CceEEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679           10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL-RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~   86 (235)
                      +..+...+.++++.++|+.+++...++.|.+||.. ++..... ....  ...+++++++.++++...++.|..||... 
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-
Confidence            34456789999999999877776667899999987 5433222 1111  23388999999888877788999999752 


Q ss_pred             CCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG  166 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  166 (235)
                      .   ............+..+++.++++.+++...++.|..||. +++... +........+..++++++|+++++...++
T Consensus        88 ~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  162 (299)
T 2z2n_A           88 I---IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSFITLGSDNALWFTENQNN  162 (299)
T ss_dssp             C---EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred             c---EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence            2   122222234457889999999987777777889999998 554432 22232334578999999998888887788


Q ss_pred             cEEEEEcCCCceeee-ecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          167 TLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       167 ~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      .|..||. +++.... .......+.++++++++.++++..  +.+.+|+.
T Consensus       163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence            9999998 6665432 233445688999999998777764  67888988

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.64  E-value=3e-13  Score=99.80  Aligned_cols=195  Identities=11%  Similarity=0.098  Sum_probs=132.8

Q ss_pred             cccceeEEEeecC-CCeeEEEeccceEEEEecCcceeeee-eec------cCCceEEEcCCCCEEEEEecC---------
Q 026679           13 HKERVISLCMSPV-NDSFMSGSLDHSVRIWDLRVNACQGI-LRL------RGRPTVAFDQQGLVFAVAMEA---------   75 (235)
Q Consensus        13 h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~------~~~~~~~~~~~~~~l~~~~~d---------   75 (235)
                      +...+.+++++++ ++++++.. .+.|.+||.+ ++.... ...      .....++++++++++++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            4567889999998 66555444 4478999987 655433 221      123459999999888777655         


Q ss_pred             ------CeEEEEeccCCCCCCceeEeecCCCcceeEEEEc----cCCCeEEEe-cCCCcEEEEEcC-CCceee--e-ecc
Q 026679           76 ------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS----NDGKSMLLT-TTNNNIYVLDAY-GGEKRC--G-FSL  140 (235)
Q Consensus        76 ------g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~i~~~d~~-~~~~~~--~-~~~  140 (235)
                            +.+..+|.. ++.     .....+......++++    |+++.++.+ ..++.|.+||+. +++...  . ...
T Consensus       147 ~~~~~~~~l~~~~~~-g~~-----~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~  220 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQM-----IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI  220 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCE-----EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cccCCCCeEEEECCC-CCE-----EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC
Confidence                  567777654 221     1111222346788999    999766555 567899999986 443211  1 122


Q ss_pred             CCCC-CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          141 EPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       141 ~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                      ..+. ..+..++++++|+++++...++.|.+||..+++.+..+..+...+.+++|+|+++.|..++   +.+..|+++.
T Consensus       221 ~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            2222 4578899999999888877788999999987887777766667899999999999555443   4788888764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.64  E-value=7.8e-13  Score=101.28  Aligned_cols=199  Identities=9%  Similarity=-0.012  Sum_probs=135.8

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCC--eEEEEeccCCCCCCce
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAG--AIKLFDSRSYDKGPFD   92 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~   92 (235)
                      .....|+|+++++++++...++.|++||..++.............++|+++++.|+++..++  .|..++......  ..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~--~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWA--PT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--EE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCce--eE
Confidence            46789999999987777777899999999887766655544433499999999999988766  788888766442  11


Q ss_pred             eE-ee-cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec--cCCCCCcc-e-eeEEeCC-CcEEEEeCCC
Q 026679           93 TF-LV-GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS--LEPSPNTN-T-EATFTPD-GQYVVSGSGD  165 (235)
Q Consensus        93 ~~-~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~~~i-~-~~~~~~~-~~~l~~~~~d  165 (235)
                      .. .. ......+.+++++|++..|+++..++.|+.||..++.......  ........ . .++|+|+ +.++++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            11 11 1134567889999955556667778899999998765432200  11111112 2 8999994 6666777778


Q ss_pred             CcEEEEEcCCCceeeeecCCC---------------cceeEEEeecCCCEEEEcc---cceEEeeCCCCC
Q 026679          166 GTLHAWNINTRNEVACWNGNI---------------GVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS  217 (235)
Q Consensus       166 g~i~v~d~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~  217 (235)
                      +.|+.|+... + +..+.++.               .....++++|+|.++++-.   +.|+.|++..+.
T Consensus       289 ~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          289 SSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             TEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             CEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            8999999753 3 22332221               3478999999998776654   458888865443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.63  E-value=8.2e-14  Score=113.64  Aligned_cols=200  Identities=9%  Similarity=-0.005  Sum_probs=132.4

Q ss_pred             ccccceeEEEeecCCCeeEE-----EeccceEEEEecCcceeeeee-eccCCceEEEcCCCCEEEEEecCC---------
Q 026679           12 GHKERVISLCMSPVNDSFMS-----GSLDHSVRIWDLRVNACQGIL-RLRGRPTVAFDQQGLVFAVAMEAG---------   76 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s-----~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg---------   76 (235)
                      +|...+..++|||||++||-     |+....|++||+.+++.+... .......++|+ |++.|+.+..+.         
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            45567889999999998884     333467999999999865432 22113458899 999999888774         


Q ss_pred             ----eEEEEeccCCCCCCceeEeecC-CCcceeEEEEccCCCeEEEecC----CCcEEEEEcCCCc-eeeeeccCCCCCc
Q 026679           77 ----AIKLFDSRSYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTT----NNNIYVLDAYGGE-KRCGFSLEPSPNT  146 (235)
Q Consensus        77 ----~v~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~-~~~~~~~~~~~~~  146 (235)
                          .|++|++.+............. +......+.|+|||++|+....    ...|+++|+.++. ....+....  ..
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~--~~  282 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL--DA  282 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS--SS
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC--Cc
Confidence                3899998775432223333333 3445778999999998865443    3589999997763 222333222  22


Q ss_pred             ceeeEEeCCCcEEE-EeCCC---CcEEEEEcCCCce--eeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCC
Q 026679          147 NTEATFTPDGQYVV-SGSGD---GTLHAWNINTRNE--VACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNP  215 (235)
Q Consensus       147 i~~~~~~~~~~~l~-~~~~d---g~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~  215 (235)
                      .... ++++|..|+ ....+   +.|..+|+.++..  ...+..|...+.  .|++++..|+...     ..+++|++++
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence            3333 666666554 44433   6799999987654  234555555554  8999999888775     2588998876


Q ss_pred             CC
Q 026679          216 SS  217 (235)
Q Consensus       216 ~~  217 (235)
                      ..
T Consensus       360 ~~  361 (693)
T 3iuj_A          360 KR  361 (693)
T ss_dssp             CE
T ss_pred             Ce
Confidence            54

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.62  E-value=8.2e-13  Score=96.96  Aligned_cols=186  Identities=10%  Similarity=0.063  Sum_probs=125.8

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC------CceEEEcCCCCEEEEEecC---------CeE
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG------RPTVAFDQQGLVFAVAMEA---------GAI   78 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~d---------g~v   78 (235)
                      ...+.+++++++|+++++ . ++.|.+||.++++.........      ...++++|+|+++++....         ..-
T Consensus        53 ~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~  130 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQG  130 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred             CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCc
Confidence            467889999999985554 3 5679999998876544433221      1238899999976655332         233


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEE-ecCCCcEEEEEc--CCCceee--e-eccCCCCCcceeeEE
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TTTNNNIYVLDA--YGGEKRC--G-FSLEPSPNTNTEATF  152 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~--~~~~~~~--~-~~~~~~~~~i~~~~~  152 (235)
                      .+|.+.....    .............++|+|+++.|+. .+.++.|..||+  .++....  . .........+..+++
T Consensus       131 ~l~~~d~~g~----~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~  206 (297)
T 3g4e_A          131 ALYSLFPDHH----VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI  206 (297)
T ss_dssp             EEEEECTTSC----EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred             EEEEEECCCC----EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence            4555443221    1112222345678999999987654 455789999997  4554321  1 122222345788999


Q ss_pred             eCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEee-cCCCEEEEcc
Q 026679          153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA-PRRAMFVAAS  205 (235)
Q Consensus       153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  205 (235)
                      +++|++.++....+.|.+||..+++.+..+..+...+++++|. |+++.|..++
T Consensus       207 d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          207 DAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             BTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            9999888887778889999998899988888777789999998 8877665543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.61  E-value=2.8e-12  Score=93.81  Aligned_cols=195  Identities=9%  Similarity=0.027  Sum_probs=136.2

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec-c--CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-R--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      ....+.++++.+++.++++...++.|.+||. +++....... .  ....+++++++.++++...++.|..||. +++. 
T Consensus        97 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-  173 (299)
T 2z2n_A           97 PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI-  173 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-
T ss_pred             cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE-
Confidence            3456889999999988887777889999998 5544322211 1  1234889999988887777889999998 4332 


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH  169 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  169 (235)
                        ...........+..+++.++++.+++...++.|..||. +++.. .+........+..++++++|+++++...++.|.
T Consensus       174 --~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  249 (299)
T 2z2n_A          174 --TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIG  249 (299)
T ss_dssp             --EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEE
T ss_pred             --EEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEE
Confidence              12223334456789999999987666666889999998 66543 333333345688999999999777776788999


Q ss_pred             EEEcCCCceeee-ecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679          170 AWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS  216 (235)
Q Consensus       170 v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~  216 (235)
                      .||. +++.... +..+...+.++++ +++.++++.. +.+..++.+..
T Consensus       250 ~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~  296 (299)
T 2z2n_A          250 RLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKD  296 (299)
T ss_dssp             EEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred             EECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence            9998 4543221 2344567899999 9998888764 66777777654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.60  E-value=1.5e-13  Score=104.86  Aligned_cols=213  Identities=12%  Similarity=0.042  Sum_probs=140.2

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEe----------ccceEEEEecCcceeeeeeecc--------C-CceEEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGS----------LDHSVRIWDLRVNACQGILRLR--------G-RPTVAF   62 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~--------~-~~~~~~   62 (235)
                      .+++.+.++..-..+  .+.++||+++++.+.          .++.|.++|..+++.+..+...        . ...+++
T Consensus       107 ~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~  184 (426)
T 3c75_H          107 STGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL  184 (426)
T ss_dssp             TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE
T ss_pred             CCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE
Confidence            355666666644455  899999999888775          4678999999999988887653        1 223899


Q ss_pred             cCCCCEEEEEec--CCeEEEEeccCCCCCCceeEeecCC--------------------------Cccee----------
Q 026679           63 DQQGLVFAVAME--AGAIKLFDSRSYDKGPFDTFLVGGD--------------------------TAEVC----------  104 (235)
Q Consensus        63 ~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~--------------------------~~~v~----------  104 (235)
                      +|+|++++++..  ++.|.++|+.+.+...  .....+.                          ...+.          
T Consensus       185 spDGk~lyV~n~~~~~~VsVID~~t~kvv~--~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~  262 (426)
T 3c75_H          185 TPDNKNLLFYQFSPAPAVGVVDLEGKTFDR--MLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTE  262 (426)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEEE--EEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCT
T ss_pred             cCCCCEEEEEecCCCCeEEEEECCCCeEEE--EEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccC
Confidence            999999999874  5789999998765311  1111000                          00000          


Q ss_pred             ------EEEEccCCCeEEEecCCCcEEEEEcCCCcee--eeeccCC--------CCCcceeeEEeCCCcEEEEeCC----
Q 026679          105 ------DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR--CGFSLEP--------SPNTNTEATFTPDGQYVVSGSG----  164 (235)
Q Consensus       105 ------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~----  164 (235)
                            .+.+.+++..++.....+.+.+.|+......  ..+....        .+.....++++|+++.+++...    
T Consensus       263 ~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~  342 (426)
T 3c75_H          263 DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE  342 (426)
T ss_dssp             TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT
T ss_pred             CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc
Confidence                  1123445555555555666777776544321  1111100        0111233789999887776532    


Q ss_pred             ------CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCC-EEEEcc---cceEEeeCCCCCCC
Q 026679          165 ------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPSSNS  219 (235)
Q Consensus       165 ------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~---~~i~iw~~~~~~~~  219 (235)
                            ++.|.++|..+.+.+..+... ....++.|+||++ +++++.   +.+.++|..+.+..
T Consensus       343 gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          343 WKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             ccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence                  357999999999999888633 3589999999998 777665   77999999877654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=1.3e-12  Score=96.36  Aligned_cols=197  Identities=11%  Similarity=0.093  Sum_probs=128.3

Q ss_pred             ccceeEEEeecCCCeeEE-------EeccceEEEEecCcceeeeeee-----c-cCCceEEEcCC-CCEEEEEecCCeEE
Q 026679           14 KERVISLCMSPVNDSFMS-------GSLDHSVRIWDLRVNACQGILR-----L-RGRPTVAFDQQ-GLVFAVAMEAGAIK   79 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s-------~~~d~~i~vwd~~~~~~~~~~~-----~-~~~~~~~~~~~-~~~l~~~~~dg~v~   79 (235)
                      -....+++|++++.++++       ...++.|.+||..+++......     . .....++++++ ++++++ +..+.|.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLL   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEE
Confidence            345678999999987777       5778899999987776543322     1 22234889998 655544 4445788


Q ss_pred             EEeccCCCCCCc-eeEeecCCCcceeEEEEccCCCeEEEecCC---------------CcEEEEEcCCCceeeeeccCCC
Q 026679           80 LFDSRSYDKGPF-DTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---------------NNIYVLDAYGGEKRCGFSLEPS  143 (235)
Q Consensus        80 i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~~~d~~~~~~~~~~~~~~~  143 (235)
                      +||.. ++.... ...........+.+++++++|+.+++...+               +.|..||.. ++......   .
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~---~  170 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT---A  170 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE---E
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc---C
Confidence            99987 432100 000000112457899999999877766554               568888765 54432221   1


Q ss_pred             CCcceeeEEe----CCCcEEEE-eCCCCcEEEEEcC-CCc-----eeeeecCCC-cceeEEEeecCCCEEEEcc--cceE
Q 026679          144 PNTNTEATFT----PDGQYVVS-GSGDGTLHAWNIN-TRN-----EVACWNGNI-GVVACLKWAPRRAMFVAAS--SVLS  209 (235)
Q Consensus       144 ~~~i~~~~~~----~~~~~l~~-~~~dg~i~v~d~~-~~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~~~~--~~i~  209 (235)
                      ......++++    |+++.|+. ...++.|.+||.. +++     ....+..+. ..+..++++++|+++++..  +.|.
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence            1235778999    99976554 4567899999986 443     223333343 5678999999999888753  6799


Q ss_pred             EeeCCCC
Q 026679          210 FWIPNPS  216 (235)
Q Consensus       210 iw~~~~~  216 (235)
                      +|+.++.
T Consensus       251 ~~d~~~g  257 (314)
T 1pjx_A          251 VFGPDGG  257 (314)
T ss_dssp             EECTTCB
T ss_pred             EEcCCCC
Confidence            9998743

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.57  E-value=4.8e-13  Score=98.58  Aligned_cols=201  Identities=11%  Similarity=0.054  Sum_probs=131.5

Q ss_pred             hhcccccceeEEEeecCCC-eeEEEeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeEEEEeccC
Q 026679            9 YFKGHKERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      .+..+........|+|+++ ++++...++.|..|+. +++. ..+....  ...++++++|+++++...++.|..|+.. 
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-  115 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-  115 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence            3444445667889999998 5677777899999997 4443 3333332  2348999999977666666889999875 


Q ss_pred             CCCCCceeEe--ecC-CCcceeEEEEccCCCeEEE----ecC-------------CCcEEEEEcCCCceeeeeccCCCCC
Q 026679           86 YDKGPFDTFL--VGG-DTAEVCDIKFSNDGKSMLL----TTT-------------NNNIYVLDAYGGEKRCGFSLEPSPN  145 (235)
Q Consensus        86 ~~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~~  145 (235)
                      ++.   ....  ... ....+..++++|+|+.+++    +..             .+.|+.+|..+++.....    ...
T Consensus       116 g~~---~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~~~  188 (305)
T 3dr2_A          116 GQA---HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----DLD  188 (305)
T ss_dssp             SCE---EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----EES
T ss_pred             CCE---EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----cCC
Confidence            321   1111  111 1134678999999997775    332             256888887666654332    113


Q ss_pred             cceeeEEeCCCcEEEEeCCC------CcEEEEEcCCCcee--eee-cCCCcceeEEEeecCCCEEEEcccceEEeeCCCC
Q 026679          146 TNTEATFTPDGQYVVSGSGD------GTLHAWNINTRNEV--ACW-NGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPS  216 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~  216 (235)
                      ....++|+|+++.|+.+...      +.|++|++..+...  ..+ ......+..++++++|++.++..+.|.+|+.++.
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~~g~  268 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFDSDGQ  268 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEECTTSC
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEECCCCC
Confidence            36789999999988776554      68999998754311  111 1123456789999999977666566999988655


Q ss_pred             CCC
Q 026679          217 SNS  219 (235)
Q Consensus       217 ~~~  219 (235)
                      ...
T Consensus       269 ~~~  271 (305)
T 3dr2_A          269 LLG  271 (305)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.55  E-value=2.3e-11  Score=88.94  Aligned_cols=192  Identities=10%  Similarity=0.072  Sum_probs=136.3

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc----CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      ...+.++++.+++.+.++...++.|..+|.. ++.. .+...    ....+++.++++++++...++.|..+|.. ++. 
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-  136 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-  136 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-
Confidence            3568899999998877777667889999987 5443 22221    12338889999888877778899999876 332 


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH  169 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  169 (235)
                        ...........+..+++.++++.+++...++.|..+|. +++... +........+..++++++|++.++....+.|.
T Consensus       137 --~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  212 (300)
T 2qc5_A          137 --YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIG  212 (300)
T ss_dssp             --EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             --EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence              12223334456889999999996666666788999998 555443 33333335578899999998888777778899


Q ss_pred             EEEcCCCceeee-ecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          170 AWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       170 v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      +||. +++.... ...+...+.+++++++|++.++..  +.|..|+.+
T Consensus       213 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          213 RITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            9998 5554332 233456788999999998777763  678888874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.55  E-value=2.3e-11  Score=88.95  Aligned_cols=193  Identities=9%  Similarity=0.039  Sum_probs=137.3

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeecc----CCceEEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK   88 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~   88 (235)
                      ....+.++++.++|+..++...++.|.+||.. ++... +...    ....+++++++.++++...++.|..||.. ++.
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            34578899999999887777778999999987 54433 2221    12238889999888777778899999976 332


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL  168 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  168 (235)
                         ...........+..+++.++++.+++...++.|..+|.. ++.. .+........+..++++++|++.++...++.|
T Consensus        95 ---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i  169 (300)
T 2qc5_A           95 ---TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSI  169 (300)
T ss_dssp             ---EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             ---EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence               223333334678899999999877777768899999987 5544 23333233457889999999977777778889


Q ss_pred             EEEEcCCCceeee-ecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          169 HAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       169 ~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      ..||. +++.... ...+...+.++++.+++.+.++..  +.+.+|+.+
T Consensus       170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  217 (300)
T 2qc5_A          170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT  217 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred             EEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence            99998 5554432 223345688999999998777764  568888873

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.54  E-value=3.2e-12  Score=93.76  Aligned_cols=196  Identities=14%  Similarity=0.070  Sum_probs=124.7

Q ss_pred             cccceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCC
Q 026679           13 HKERVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP   90 (235)
Q Consensus        13 h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~   90 (235)
                      +..---+..|+|++ .++++...++.|..||..+++.. .+.... ...++++++++++++ . ++.|.+||..+++...
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVV   87 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEE
Confidence            33445678899965 55666667889999999877653 333332 334899999995554 3 5689999987654211


Q ss_pred             ceeEeec--CCCcceeEEEEccCCCeEEEecC-----------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679           91 FDTFLVG--GDTAEVCDIKFSNDGKSMLLTTT-----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        91 ~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                        .....  .....+..++++|+|+.+++...           .+.|+.++.. ++......   .......++|+|+++
T Consensus        88 --~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~---~~~~pngi~~spdg~  161 (297)
T 3g4e_A           88 --LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD---QVDISNGLDWSLDHK  161 (297)
T ss_dssp             --EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE---EESBEEEEEECTTSC
T ss_pred             --EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee---ccccccceEEcCCCC
Confidence              11111  12245788999999996665422           2345555432 33322111   113357899999998


Q ss_pred             EEE-EeCCCCcEEEEEc--CCCce-----eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          158 YVV-SGSGDGTLHAWNI--NTRNE-----VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       158 ~l~-~~~~dg~i~v~d~--~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      .|+ +.+.++.|.+|++  .++..     ...+..+...+..+++.++|++.++..  +.|..|+.++++
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred             EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence            764 5566788999997  45543     222333345788999999998777764  569999987544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.53  E-value=2e-12  Score=97.02  Aligned_cols=209  Identities=9%  Similarity=-0.061  Sum_probs=134.2

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEe----------ccceEEEEecCcceeeeeeecc---------CCceEEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGS----------LDHSVRIWDLRVNACQGILRLR---------GRPTVAF   62 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~---------~~~~~~~   62 (235)
                      ++++.+.++..-..+  .+.++||+++++.+.          .++.|.+||+.+++.+..+..+         ....+++
T Consensus        54 ~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~  131 (368)
T 1mda_H           54 GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN  131 (368)
T ss_dssp             TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred             CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEE
Confidence            456666677655556  799999999888876          4789999999999999998754         2334999


Q ss_pred             cCCCCEEEEEec--CCeEEE--EeccCCCCCCceeEeecC----------------CCcceeEEE---------------
Q 026679           63 DQQGLVFAVAME--AGAIKL--FDSRSYDKGPFDTFLVGG----------------DTAEVCDIK---------------  107 (235)
Q Consensus        63 ~~~~~~l~~~~~--dg~v~i--~d~~~~~~~~~~~~~~~~----------------~~~~v~~~~---------------  107 (235)
                      +|+|++++++..  +..+.+  +|+.+.     ......+                ..+.+..+.               
T Consensus       132 SpDGk~lyVan~~~~~~v~V~~iD~~tv-----~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~  206 (368)
T 1mda_H          132 CASSACLLFFLFGSSAAAGLSVPGASDD-----QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             CTTSSCEEEEECSSSCEEEEEETTTEEE-----EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             cCCCCEEEEEccCCCCeEEEEEEchhhc-----eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence            999999998875  457888  888550     0110000                000000000               


Q ss_pred             -----------EccCCCeEEEecCCCcEEEEEcCCCc--eeeeeccCC--------CCCcceeeEEeCCCcEEEEeCC--
Q 026679          108 -----------FSNDGKSMLLTTTNNNIYVLDAYGGE--KRCGFSLEP--------SPNTNTEATFTPDGQYVVSGSG--  164 (235)
Q Consensus       108 -----------~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~--  164 (235)
                                 ..+++..++..+. +.+.+.|..+..  ....+....        .+.....++++|+++.++++..  
T Consensus       207 t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~  285 (368)
T 1mda_H          207 TGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             eeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccc
Confidence                       0333444444444 677777775432  222221110        0111223789999998876533  


Q ss_pred             -------CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCE-EEEcc---cceEEeeCCCCCCC
Q 026679          165 -------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM-FVAAS---SVLSFWIPNPSSNS  219 (235)
Q Consensus       165 -------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~---~~i~iw~~~~~~~~  219 (235)
                             ++.+.++|+.+++.+..+... ....+++|+||++. +++..   +++.++|+.+.+..
T Consensus       286 ~~~~~~~~~~~~ViD~~t~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          286 SRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             cCcccccCCCEEEEECCCCeEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence                   235669999999998888744 36899999999974 33332   67999999876543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.53  E-value=7.6e-12  Score=93.01  Aligned_cols=190  Identities=12%  Similarity=0.039  Sum_probs=123.2

Q ss_pred             ceeEEEeecCC-CeeEEEeccceEEEEecCcceeeeeeecc-CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCcee
Q 026679           16 RVISLCMSPVN-DSFMSGSLDHSVRIWDLRVNACQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT   93 (235)
Q Consensus        16 ~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~   93 (235)
                      ...+..|+|++ .++++...++.|..||..+++... +... ....++++++++++++. . ..|.+||..+++.   ..
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~---~~  123 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVL---TL  123 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCE---EE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcE---EE
Confidence            34678899975 456666678899999998776433 3322 23348899999877654 4 4599999876542   11


Q ss_pred             Eeec---CCCcceeEEEEccCCCeEEEecC------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE-eC
Q 026679           94 FLVG---GDTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS-GS  163 (235)
Q Consensus        94 ~~~~---~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~  163 (235)
                      ....   .....+..++++|+|+.+++...      .+.|..++  +++......   .......++|+|+++.|+. .+
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~---~~~~~~~i~~s~dg~~lyv~~~  198 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA---DISIPNSICFSPDGTTGYFVDT  198 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE---EESSEEEEEECTTSCEEEEEET
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC---CCcccCCeEEcCCCCEEEEEEC
Confidence            1111   11245889999999986655432      24566676  454332211   1123578999999987654 45


Q ss_pred             CCCcEEEEEcC--CC-ce-----eeeecCCCcceeEEEeecCCCEEEEc--ccceEEeeCCCC
Q 026679          164 GDGTLHAWNIN--TR-NE-----VACWNGNIGVVACLKWAPRRAMFVAA--SSVLSFWIPNPS  216 (235)
Q Consensus       164 ~dg~i~v~d~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~i~iw~~~~~  216 (235)
                      .++.|.+||+.  ++ +.     ...+......+..+++.++|.+.++.  ++.|.+|+.+..
T Consensus       199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~  261 (326)
T 2ghs_A          199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN  261 (326)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC
T ss_pred             CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCC
Confidence            67899999986  55 32     22233334567889999999887776  367999988543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.52  E-value=6.2e-12  Score=89.75  Aligned_cols=204  Identities=13%  Similarity=0.086  Sum_probs=138.0

Q ss_pred             hhhhhhhccccc--ceeEEEeecCCCeeEEEec--cceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEE-ecCCe
Q 026679            4 NRILRYFKGHKE--RVISLCMSPVNDSFMSGSL--DHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVA-MEAGA   77 (235)
Q Consensus         4 ~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-~~dg~   77 (235)
                      .+.++++. |..  ....+.|++++.++++.+.  ++.|++.|+.+++.+..+....... ..+..+++.++.+ -.++.
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~   87 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSE
T ss_pred             ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCE
Confidence            34555563 443  3579999998755555443  5799999999999988887544322 2233335455544 45789


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC---CcceeeEEeC
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEATFTP  154 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~  154 (235)
                      +.++|..+.+.  ...+... ...   ...+++||+.++++..++.|.++|..+.+....+......   ..++.+.|. 
T Consensus        88 v~viD~~t~~v--~~~i~~g-~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-  160 (266)
T 2iwa_A           88 GFIYDRRTLSN--IKNFTHQ-MKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-  160 (266)
T ss_dssp             EEEEETTTTEE--EEEEECC-SSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             EEEEECCCCcE--EEEEECC-CCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence            99999987654  1122222 111   2346678888888878899999999998887776654322   125678888 


Q ss_pred             CCcEEEEeCCCCcEEEEEcCCCceeeeecCC-------------CcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          155 DGQYVVSGSGDGTLHAWNINTRNEVACWNGN-------------IGVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       155 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                      +|...+....++.|.+.|..+++.+..+...             ......|+|+|+++.+..++   ..+...++..
T Consensus       161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            7766666666889999999999988887532             12558999999987666665   5566666644

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.52  E-value=1.1e-11  Score=91.25  Aligned_cols=193  Identities=8%  Similarity=0.041  Sum_probs=125.7

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec------cCCceEEEcCCCCEEEE----Eec----
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL------RGRPTVAFDQQGLVFAV----AME----   74 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~----~~~----   74 (235)
                      .+..+...+..++++++|+++++...++.|.+|+.+ ++.......      .....++++++|+++++    |..    
T Consensus        80 ~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~  158 (305)
T 3dr2_A           80 VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQ  158 (305)
T ss_dssp             EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGG
T ss_pred             EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccc
Confidence            344456678899999999876666566789999975 543322211      11234899999998876    321    


Q ss_pred             ---------CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC------CcEEEEEcCCCceeee-e
Q 026679           75 ---------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN------NNIYVLDAYGGEKRCG-F  138 (235)
Q Consensus        75 ---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~-~  138 (235)
                               .+.|..+|..+++.   ... .  .......++|+|+++.|+.+...      +.|.+|++..+..... .
T Consensus       159 ~~~~~~~~~~~~v~~~d~~~g~~---~~~-~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~  232 (305)
T 3dr2_A          159 GCPADPELAHHSVYRLPPDGSPL---QRM-A--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH  232 (305)
T ss_dssp             SCCCCCSSSCEEEEEECSSSCCC---EEE-E--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEE
T ss_pred             ccccccccCCCeEEEEcCCCCcE---EEE-e--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeE
Confidence                     25677777755543   111 1  23456789999999988777665      7899999876542111 1


Q ss_pred             ccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEee
Q 026679          139 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWI  212 (235)
Q Consensus       139 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~  212 (235)
                      ...........++++++|++. +++.+| |.+|+. +++.+..+..+. .+.+++|.|+++.|..++ +.+..++
T Consensus       233 ~~~~~~~~pdgi~~d~~G~lw-v~~~~g-v~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          233 FASVPDGLPDGFCVDRGGWLW-SSSGTG-VCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             EECCSSSCCCSEEECTTSCEE-ECCSSE-EEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred             EEECCCCCCCeEEECCCCCEE-EecCCc-EEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence            111122345678999999944 444454 999997 677777776554 589999999987766665 5444433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.51  E-value=4.4e-12  Score=104.29  Aligned_cols=199  Identities=13%  Similarity=0.113  Sum_probs=129.6

Q ss_pred             eeEEEeecCCCeeEEEeccce--------------EEEEecCccee--eeeeeccC----CceEEEcCCCCEEEEEecCC
Q 026679           17 VISLCMSPVNDSFMSGSLDHS--------------VRIWDLRVNAC--QGILRLRG----RPTVAFDQQGLVFAVAMEAG   76 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~--------------i~vwd~~~~~~--~~~~~~~~----~~~~~~~~~~~~l~~~~~dg   76 (235)
                      +..++|+|| +.|+.++.|+.              |++|++.++..  ...+....    ...+.|+|+|+.|+..+.++
T Consensus       211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred             eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence            367899999 98888877654              88999877653  22333222    22388999999988887654


Q ss_pred             -----eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC----CCcEEEEEcCCCc-eeeeeccCCCCCc
Q 026679           77 -----AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT----NNNIYVLDAYGGE-KRCGFSLEPSPNT  146 (235)
Q Consensus        77 -----~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~-~~~~~~~~~~~~~  146 (235)
                           .+.+||+.++..... . .+..+....... ++|+|+.|+..+.    ++.|.+||+.++. ....+. ..+...
T Consensus       290 ~~~~~~l~~~d~~~~~~~~~-~-~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~  365 (741)
T 1yr2_A          290 TDPVNTVHVARVTNGKIGPV-T-ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESKDN  365 (741)
T ss_dssp             TCSCCEEEEEEEETTEECCC-E-EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCSSE
T ss_pred             CCCcceEEEEECCCCCCccc-E-EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCCCe
Confidence                 899999987521101 1 222333334444 3488998888775    3459999988742 222222 223344


Q ss_pred             ceeeEEeCCCcEEEEeCCCCcEEEEEcC-CCceeeeecC-CCcceeEEEeecCCCEEEEc--c----cceEEeeCCCCCC
Q 026679          147 NTEATFTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNG-NIGVVACLKWAPRRAMFVAA--S----SVLSFWIPNPSSN  218 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~----~~i~iw~~~~~~~  218 (235)
                      +..+.++ ++.++++...|+..++|.+. +++....+.. ..+.+..+.++|++..++..  +    +.+++||+.+++.
T Consensus       366 l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          366 LESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            6677777 56677888888887776554 4555555654 35678899999998766533  2    6799999877654


Q ss_pred             CCC
Q 026679          219 STD  221 (235)
Q Consensus       219 ~~~  221 (235)
                      ..+
T Consensus       445 ~~l  447 (741)
T 1yr2_A          445 TPW  447 (741)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=1.5e-11  Score=94.19  Aligned_cols=188  Identities=9%  Similarity=0.050  Sum_probs=124.3

Q ss_pred             EEeecCCCeeEEEeccc--eEEEEecCcceeeeee------eccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679           20 LCMSPVNDSFMSGSLDH--SVRIWDLRVNACQGIL------RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        20 ~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~   91 (235)
                      ++|+++++.|+++..++  .|.+++...+.....+      .......++++|++..|+++..++.|..||..+...   
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~---  252 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV---  252 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE---
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE---
Confidence            89999999888888766  7888887765543333      122234589999555566677788999999876542   


Q ss_pred             eeEe---ecCCCcce--eEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCC-------------CCCcceeeEE
Q 026679           92 DTFL---VGGDTAEV--CDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP-------------SPNTNTEATF  152 (235)
Q Consensus        92 ~~~~---~~~~~~~v--~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-------------~~~~i~~~~~  152 (235)
                      ....   ..+....-  ..++|+|+ +..+++-..++.|+.|+.... .. .+....             .-.....+++
T Consensus       253 ~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~  330 (409)
T 3hrp_A          253 TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CE-WFCGSATQKTVQDGLREEALFAQPNGMTV  330 (409)
T ss_dssp             EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EE-EEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred             EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EE-EEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence            1110   11111111  28999995 555556666889999997543 22 221111             0134678999


Q ss_pred             eCCCcEEEEeC-CCCcEEEEEcCCCceeeeecCC---------------CcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          153 TPDGQYVVSGS-GDGTLHAWNINTRNEVACWNGN---------------IGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       153 ~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      +|+|+++++-. .++.|+.|++.+++. ..+.++               -.....++++|++.++++-.  +.|+.+.+
T Consensus       331 d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          331 DEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            99999888887 889999999877764 333333               23578999999987777665  44555543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.51  E-value=2e-12  Score=97.42  Aligned_cols=136  Identities=13%  Similarity=0.180  Sum_probs=102.2

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~   91 (235)
                      .+.. |+.++|  ++++|+++ .++.|++||+.+.........+...+..+.+-...++++..||.+.+||+.+...   
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~---  158 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST---  158 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE---
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc---
Confidence            3556 999999  88999998 8899999999876655555555544433333333489999999999999987553   


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce--eeeecc----C---CCCCcceeeEEeCCCcEEEE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK--RCGFSL----E---PSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~----~---~~~~~i~~~~~~~~~~~l~~  161 (235)
                       . .   +...|++++|+|+|  ++.+..||.+++|+...++.  ...+..    .   .+...|.++.|.+++.++++
T Consensus       159 -~-~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          159 -K-Q---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             -E-E---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             -c-c---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence             1 1   33589999999999  67899999999999877764  333311    1   24577999999999999886

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.50  E-value=3.7e-11  Score=89.32  Aligned_cols=182  Identities=15%  Similarity=0.135  Sum_probs=120.8

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC------CceEEEcCCCCEEEEEec------CCeEEEE
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG------RPTVAFDQQGLVFAVAME------AGAIKLF   81 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~------dg~v~i~   81 (235)
                      ...+.+++|+++|+++++. .+ .|.+||..+++.........      ...++++|+|+++++...      .+.|..+
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~  166 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  166 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence            4578999999998877654 44 49999988776543332211      223889999997665543      2455555


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcC--CC-cee--eee-ccCCCCCcceeeEEeC
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAY--GG-EKR--CGF-SLEPSPNTNTEATFTP  154 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~--~~-~~~--~~~-~~~~~~~~i~~~~~~~  154 (235)
                      +  +++     ...+.........++|+|+++.++.+ +.++.|.+||+.  ++ +..  ..+ ........+..+++++
T Consensus       167 ~--~g~-----~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~  239 (326)
T 2ghs_A          167 A--KGK-----VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  239 (326)
T ss_dssp             E--TTE-----EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             e--CCc-----EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence            5  222     11111222346789999999876555 457899999986  55 321  111 1222234567899999


Q ss_pred             CCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEee-cCCCEEEEcc
Q 026679          155 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA-PRRAMFVAAS  205 (235)
Q Consensus       155 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  205 (235)
                      +|++.++...++.|.+||. +++.+..+..+...+++++|. |++..|..++
T Consensus       240 ~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          240 EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            9988777766788999998 677777777666679999998 8877665443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.49  E-value=8.6e-12  Score=93.70  Aligned_cols=194  Identities=11%  Similarity=0.046  Sum_probs=133.1

Q ss_pred             eeEEEeecCCCeeEEEec-----cceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEe----------cCCeEEEE
Q 026679           17 VISLCMSPVNDSFMSGSL-----DHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAM----------EAGAIKLF   81 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~dg~v~i~   81 (235)
                      .......|+++.++....     ++.|.+.|..+++.+..+.....+.++++|+++.++++.          .++.|.+|
T Consensus        35 ~~~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           35 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ceeeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            334566789988887765     679999999999999998876666699999999888776          36789999


Q ss_pred             eccCCCCCCceeEeecC-----CCcceeEEEEccCCCeEEEecC--CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC
Q 026679           82 DSRSYDKGPFDTFLVGG-----DTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP  154 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~  154 (235)
                      |..+.+.  ........     .......++++|||++++++..  ++.|.++|+.+++.+..+.....     ...+..
T Consensus       115 D~~t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P~  187 (386)
T 3sjl_D          115 DPVTLLP--TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPT  187 (386)
T ss_dssp             CTTTCCE--EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEE
T ss_pred             ECCCCeE--EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeecC
Confidence            9988664  11222221     0124557899999999888764  68999999999999888765431     123333


Q ss_pred             CCcEEEEeCCCCcEEEEEcCC-CceeeeecCC----Ccce-eEEEee-cCCCEEEEc-ccceEEeeCCCCC
Q 026679          155 DGQYVVSGSGDGTLHAWNINT-RNEVACWNGN----IGVV-ACLKWA-PRRAMFVAA-SSVLSFWIPNPSS  217 (235)
Q Consensus       155 ~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~----~~~v-~~~~~~-~~~~~l~~~-~~~i~iw~~~~~~  217 (235)
                      ..+.+++.+.||.+.+.++.+ ++.......+    ..++ ....|. ++|+++..+ ++.+.+.|..+..
T Consensus       188 g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~  258 (386)
T 3sjl_D          188 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD  258 (386)
T ss_dssp             ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred             CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCc
Confidence            445666777788888888865 4442211111    1222 224664 688665444 4889999987654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.49  E-value=1.5e-11  Score=86.88  Aligned_cols=198  Identities=12%  Similarity=0.129  Sum_probs=134.4

Q ss_pred             hhhhhcccccc--eeEEEeecCCCeeEEEeccc--eEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEe-cCCeEE
Q 026679            6 ILRYFKGHKER--VISLCMSPVNDSFMSGSLDH--SVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAM-EAGAIK   79 (235)
Q Consensus         6 ~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-~dg~v~   79 (235)
                      .++++ .|...  ...+.|+ ++.++.+.+.+|  .|+++|+++++.+..+....... ..+.++++.|.... .++.+.
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence            34445 34332  4678888 666667777765  89999999999998887765432 33344455555554 588999


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC---CcceeeEEeCCC
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEATFTPDG  156 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~  156 (235)
                      +||..+.+.  ...+....     ....++++++.|+.+..++.|.++|..+.+....+......   ..++.+.|. +|
T Consensus       111 v~D~~t~~~--~~ti~~~~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G  182 (262)
T 3nol_A          111 VWNIRNLRQ--VRSFNYDG-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG  182 (262)
T ss_dssp             EEETTTCCE--EEEEECSS-----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             EEECccCcE--EEEEECCC-----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence            999988764  12222222     22334467888888777888999999999888776654322   224457776 77


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeecCC------------CcceeEEEeecCCCEEEEcccc-eEEeeC
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWNGN------------IGVVACLKWAPRRAMFVAASSV-LSFWIP  213 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~~-i~iw~~  213 (235)
                      +..+..-.+..|.+.|.++++.+..+...            ......|+|+|+++.|...++. =++|.+
T Consensus       183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev  252 (262)
T 3nol_A          183 EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEI  252 (262)
T ss_dssp             EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEE
Confidence            76666667889999999999988776532            1356899999988877777732 444443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.48  E-value=1.5e-11  Score=92.03  Aligned_cols=194  Identities=9%  Similarity=0.071  Sum_probs=125.1

Q ss_pred             ccccceeEEEeecCCCeeEEEec-----cceEEEEecCcceeeeeeeccC--------CceEEEcCCCCEE-EEEe---c
Q 026679           12 GHKERVISLCMSPVNDSFMSGSL-----DHSVRIWDLRVNACQGILRLRG--------RPTVAFDQQGLVF-AVAM---E   74 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~l-~~~~---~   74 (235)
                      +|...+.+++++++++++++-..     ++.|.+||+.+++.+..+..+.        ...+++++++..+ ++..   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            35568899999999876665433     5789999999998777665431        1348899865444 4444   5


Q ss_pred             CCeEEEEeccCCCCCCc-----------eeEeecC--------------CCcceeEEEEccCCCeEEEecCCC-cEEEEE
Q 026679           75 AGAIKLFDSRSYDKGPF-----------DTFLVGG--------------DTAEVCDIKFSNDGKSMLLTTTNN-NIYVLD  128 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~-----------~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d  128 (235)
                      ++.|.+||+.+++....           ..+...+              ....+..++|+|+++.|+.+...+ .+..++
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            78999999876432000           0000000              012367899999999888877655 565555


Q ss_pred             cC---CCc-----eeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecC-CCcceeEEEeecCCC
Q 026679          129 AY---GGE-----KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRA  199 (235)
Q Consensus       129 ~~---~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~  199 (235)
                      ..   .+.     ....+....+......++++++|+++++...++.|.+||..+++....... +...+.+++|.+++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY  303 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence            32   111     000011101122356799999999999998899999999856654333322 234688999999998


Q ss_pred             EEEEcc
Q 026679          200 MFVAAS  205 (235)
Q Consensus       200 ~l~~~~  205 (235)
                      ++++.+
T Consensus       304 l~v~~~  309 (343)
T 2qe8_A          304 LYFDCN  309 (343)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            887776

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.47  E-value=1.5e-14  Score=109.33  Aligned_cols=180  Identities=14%  Similarity=0.070  Sum_probs=98.8

Q ss_pred             CCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCC-cce
Q 026679           25 VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEV  103 (235)
Q Consensus        25 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~v  103 (235)
                      ++..+++++.|+.|+.||..+++.+..+.........+..++..+++++.||.++.||..+++..    .....+. ..+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~----w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL----TKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCS----EECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCcee----eeeeccCcccc
Confidence            46789999999999999999999988877633333344557778888889999999999877641    1111111 111


Q ss_pred             e-EEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee
Q 026679          104 C-DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW  182 (235)
Q Consensus       104 ~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  182 (235)
                      . ...+. ++..+++++.++.++.||..+|+....+....      ...++|++..+++++.|+.|+.||.++++.+..+
T Consensus        84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             TTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC------cccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence            1 01111 34567888889999999999998876554432      1356678889999999999999999999877665


Q ss_pred             cCCCcceeEEEeecC----CCEEEEcc-cceEEeeCCCCC
Q 026679          183 NGNIGVVACLKWAPR----RAMFVAAS-SVLSFWIPNPSS  217 (235)
Q Consensus       183 ~~~~~~v~~~~~~~~----~~~l~~~~-~~i~iw~~~~~~  217 (235)
                      ..+.  .....+.++    +.+++.+. +.+..||.++++
T Consensus       157 ~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          157 TYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             EEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             eccc--ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            4221  222333432    34443333 778999887654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.47  E-value=1.7e-11  Score=92.12  Aligned_cols=197  Identities=11%  Similarity=0.064  Sum_probs=131.0

Q ss_pred             eeEEEeecCCCeeEEEec--cceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccC-CCCCCcee
Q 026679           17 VISLCMSPVNDSFMSGSL--DHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRS-YDKGPFDT   93 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~   93 (235)
                      -..+.|+|||++++.+..  ++.|.++|+.+++.+..+..... ...+....+.+++.+.||.+.+.++.. ++.  ...
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v--~~~  215 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP--EIT  215 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCC--EEE
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-ceeecCCCceeEEECCCCCEEEEECCCCCeE--EEe
Confidence            345899999999888764  68999999999999988876542 222333445677777788888888765 332  111


Q ss_pred             Ee--ecCCCccee-EEEEc-cCCCeEEEecCCCcEEEEEcCCCc--eeeeecc--------CCCCCcceeeEEeCCCcEE
Q 026679           94 FL--VGGDTAEVC-DIKFS-NDGKSMLLTTTNNNIYVLDAYGGE--KRCGFSL--------EPSPNTNTEATFTPDGQYV  159 (235)
Q Consensus        94 ~~--~~~~~~~v~-~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~--------~~~~~~i~~~~~~~~~~~l  159 (235)
                      ..  +.....++. ...|. ++|++++ .+.+|.|++.|+.++.  ....+..        ...+.....++++|+++.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~l  294 (386)
T 3sjl_D          216 HTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI  294 (386)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             ecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeE
Confidence            10  001112222 24564 5776444 5668999999997664  2222220        1112334558889999888


Q ss_pred             EEeCC----------CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCC-EEEEcc---cceEEeeCCCCCC
Q 026679          160 VSGSG----------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPSSN  218 (235)
Q Consensus       160 ~~~~~----------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~---~~i~iw~~~~~~~  218 (235)
                      +....          .+.|.++|+.+++.+..+.. ...+.+|+++||++ +|+++.   +++.++|..+.+.
T Consensus       295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence            77642          25699999999999988863 34788999999996 666543   7899999977654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.40  E-value=5.6e-11  Score=90.22  Aligned_cols=185  Identities=10%  Similarity=0.111  Sum_probs=123.8

Q ss_pred             eEEEeecCCCeeEEEecc------ceEEEEecCcceeeeeeeccCCce-----EEEcCCCCEEEEEe-------------
Q 026679           18 ISLCMSPVNDSFMSGSLD------HSVRIWDLRVNACQGILRLRGRPT-----VAFDQQGLVFAVAM-------------   73 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~-------------   73 (235)
                      ..+..+|+| .++++..+      +.+.+.|.++++.+..+.......     +.|+|+++.+++..             
T Consensus       141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~  219 (462)
T 2ece_A          141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKL  219 (462)
T ss_dssp             EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCT
T ss_pred             cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccch
Confidence            456778998 76766655      789999999999998887543321     77899999888885             


Q ss_pred             ------cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEE--ccCCCeEEEecC------CCcEEEEEcCCCceeee--
Q 026679           74 ------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF--SNDGKSMLLTTT------NNNIYVLDAYGGEKRCG--  137 (235)
Q Consensus        74 ------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~--  137 (235)
                            ....|.+||+.+.+.  .....+.........+.|  +|+++++++++.      +++|.+|....++....  
T Consensus       220 ~~~~~~~~d~V~v~D~~~~k~--~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v  297 (462)
T 2ece_A          220 EHLKDRYGNRIHFWDLRKRKR--IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV  297 (462)
T ss_dssp             TTHHHHSCCEEEEEETTTTEE--EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred             hhhhhccCCEEEEEECCCCcE--eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence                  368999999987532  222232212233455555  999998887774      56787766544322111  


Q ss_pred             eccCCC----------------CCcceeeEEeCCCcEEEEeCC-CCcEEEEEcCC---CceeeeecCCC-----------
Q 026679          138 FSLEPS----------------PNTNTEATFTPDGQYVVSGSG-DGTLHAWNINT---RNEVACWNGNI-----------  186 (235)
Q Consensus       138 ~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~---~~~~~~~~~~~-----------  186 (235)
                      +.....                ......+.++|||++|+++.. .+.|.+||+.+   .+.+..+....           
T Consensus       298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~  377 (462)
T 2ece_A          298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH  377 (462)
T ss_dssp             EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred             EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence            101100                134678999999999977654 68899999863   33444443210           


Q ss_pred             ---cceeEEEeecCCCEEEEcc
Q 026679          187 ---GVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       187 ---~~v~~~~~~~~~~~l~~~~  205 (235)
                         +....++++|||++|+++.
T Consensus       378 ~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          378 KLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCSCCCCEEECTTSSEEEEEC
T ss_pred             cCCCCCCEEEEcCCCCEEEEEc
Confidence               1368899999999998887

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.39  E-value=5.2e-11  Score=93.35  Aligned_cols=199  Identities=12%  Similarity=0.033  Sum_probs=135.3

Q ss_pred             cceeEEEe-e-cCCCeeEEEe------------------ccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEe
Q 026679           15 ERVISLCM-S-PVNDSFMSGS------------------LDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAM   73 (235)
Q Consensus        15 ~~v~~~~~-~-~~~~~l~s~~------------------~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~   73 (235)
                      .....+++ + |++++++.++                  .++.+.+.|.++.+....+.....+- ++++|+|+++++.+
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~  213 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS  213 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEe
Confidence            34678887 5 8999988874                  35689999999999888888655443 99999999999888


Q ss_pred             cCC--------------------------------------eEEEEeccCCCCCC-ceeEeecCCCcceeEEEEccCCCe
Q 026679           74 EAG--------------------------------------AIKLFDSRSYDKGP-FDTFLVGGDTAEVCDIKFSNDGKS  114 (235)
Q Consensus        74 ~dg--------------------------------------~v~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~  114 (235)
                      .+.                                      .|.+.|.++.+... ......   .....++.++|||++
T Consensus       214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv---g~~PhGv~~sPDGk~  290 (595)
T 1fwx_A          214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKH  290 (595)
T ss_dssp             SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE---ESSCCCEEECTTSSE
T ss_pred             cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec---CCCceEEEEcCCCCE
Confidence            543                                      35555655421111 111111   234567899999998


Q ss_pred             EEEec-CCCcEEEEEcCCCc------------eeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC------
Q 026679          115 MLLTT-TNNNIYVLDAYGGE------------KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT------  175 (235)
Q Consensus       115 l~~~~-~d~~i~~~d~~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~------  175 (235)
                      +++++ .+.+|.++|+.+.+            ......  .. .....++|+|+|....+...|+.|.+||+.+      
T Consensus       291 v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~  367 (595)
T 1fwx_A          291 LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LG-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYA  367 (595)
T ss_dssp             EEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CC-SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred             EEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--CC-CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhc
Confidence            87766 47899999998653            222222  22 2367899999995555677799999999976      


Q ss_pred             ----CceeeeecCCCcc-----eeEEEeecCCCEEEEcc----cce-----------EEeeCCCCCCC
Q 026679          176 ----RNEVACWNGNIGV-----VACLKWAPRRAMFVAAS----SVL-----------SFWIPNPSSNS  219 (235)
Q Consensus       176 ----~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~----~~i-----------~iw~~~~~~~~  219 (235)
                          .+.+..+..|-.+     -.++.++|||++|+++.    ..+           .++|+.+.+..
T Consensus       368 g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~  435 (595)
T 1fwx_A          368 GEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV  435 (595)
T ss_dssp             TCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred             ccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence                4455555554332     13345689999999986    224           88998665543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.36  E-value=1.4e-09  Score=82.27  Aligned_cols=186  Identities=10%  Similarity=-0.027  Sum_probs=122.9

Q ss_pred             EeecCCCeeEEEec--cc---eEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEe----------cCCeEEEEeccC
Q 026679           21 CMSPVNDSFMSGSL--DH---SVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAM----------EAGAIKLFDSRS   85 (235)
Q Consensus        21 ~~~~~~~~l~s~~~--d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~dg~v~i~d~~~   85 (235)
                      ...|++++++....  ..   +|.++|..+++.+..+.....+-++++|+++.++++.          .++.|.+||..+
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            44577877776653  22   8899999999988888766555799999999999886          367899999987


Q ss_pred             CCCCCceeEeec--C---CCcceeEEEEccCCCeEEEecC--CCcEEEEEcCCCceeee-eccCCCCCcceeeEEeCCC-
Q 026679           86 YDKGPFDTFLVG--G---DTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCG-FSLEPSPNTNTEATFTPDG-  156 (235)
Q Consensus        86 ~~~~~~~~~~~~--~---~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-  156 (235)
                      .+..  ......  .   .......++|+|||++|+++..  ++.|.++| .+++.... +....      ++.+.|++ 
T Consensus       107 ~~~~--~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~------~~~~~~~~~  177 (373)
T 2mad_H          107 FLPI--ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT------CYHIHPGAP  177 (373)
T ss_pred             CcEE--EEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc------eEEEEeCCC
Confidence            5531  111111  0   0123457899999999998874  57899999 99988766 54322      24555654 


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeec-----CCCcc-eeEEEeecCCCE-EEEc-ccceEEeeCCCC
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWN-----GNIGV-VACLKWAPRRAM-FVAA-SSVLSFWIPNPS  216 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~-l~~~-~~~i~iw~~~~~  216 (235)
                      +.+++.+.||.+.++|. +++.+....     ....+ .....+.+++.. ++.. .+.+.+.|+...
T Consensus       178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~  244 (373)
T 2mad_H          178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence            45566778999999999 877663321     11112 123455665443 3222 366777777543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.35  E-value=1.6e-10  Score=86.50  Aligned_cols=196  Identities=8%  Similarity=0.034  Sum_probs=122.1

Q ss_pred             cceeEEEeecCCCeeEEEec--cceEEEEecCcceeeeeeec-------c--CCceEEEcCCCCEEEEEec-----CCeE
Q 026679           15 ERVISLCMSPVNDSFMSGSL--DHSVRIWDLRVNACQGILRL-------R--GRPTVAFDQQGLVFAVAME-----AGAI   78 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~-------~--~~~~~~~~~~~~~l~~~~~-----dg~v   78 (235)
                      .....++++++|+.+++...  ++.++||.+.+++.. .+..       +  ....++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            57889999999998888642  343556665445432 1211       1  1123899999886666544     5789


Q ss_pred             EEEeccCCCCCCceeEeec----CCCcceeEEEEccCCCeE-EEec---CCCcEEEEEcCCCceeeeeccCCC-------
Q 026679           79 KLFDSRSYDKGPFDTFLVG----GDTAEVCDIKFSNDGKSM-LLTT---TNNNIYVLDAYGGEKRCGFSLEPS-------  143 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l-~~~~---~d~~i~~~d~~~~~~~~~~~~~~~-------  143 (235)
                      .+||+.+++.  .....+.    .+...+..+++++++..+ ++..   .++.|.+||+.+++.......+..       
T Consensus        96 ~~~d~~tg~~--~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           96 VAWDTLNNQL--SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEETTTTEE--EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred             EEEECCCCeE--EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence            9999987552  1122221    122456889999865454 4444   578899999987765543321100       


Q ss_pred             --------------------CCcceeeEEeCCCcEEEEeCCCC-cEEEEEcC---CCc-----eee--eecCCCcceeEE
Q 026679          144 --------------------PNTNTEATFTPDGQYVVSGSGDG-TLHAWNIN---TRN-----EVA--CWNGNIGVVACL  192 (235)
Q Consensus       144 --------------------~~~i~~~~~~~~~~~l~~~~~dg-~i~v~d~~---~~~-----~~~--~~~~~~~~v~~~  192 (235)
                                          ...+..++|+|+|+.|+.+..++ .++.++..   .+.     ...  ...++......+
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi  253 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI  253 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence                                01257799999999888776655 55555532   111     011  111233456789


Q ss_pred             EeecCCCEEEEcc--cceEEeeC
Q 026679          193 KWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       193 ~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      +++++|.++++..  +.|.+|+.
T Consensus       254 a~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          254 SIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             EECTTCCEEEEEGGGTEEEEEET
T ss_pred             EECCCCCEEEEccCCCeEEEEEC
Confidence            9999998888775  67999998

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.35  E-value=6.5e-11  Score=96.66  Aligned_cols=193  Identities=13%  Similarity=0.144  Sum_probs=123.2

Q ss_pred             eeEEEeecCCCeeEEEeccce-------------EEEEecCccee--eeeeecc---CC--ceEEEcCCCCEEEEEec--
Q 026679           17 VISLCMSPVNDSFMSGSLDHS-------------VRIWDLRVNAC--QGILRLR---GR--PTVAFDQQGLVFAVAME--   74 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~-------------i~vwd~~~~~~--~~~~~~~---~~--~~~~~~~~~~~l~~~~~--   74 (235)
                      ...++|+ |++.|+.++.+..             |++|++.++..  ...+...   ..  ..+.++|+|++|+....  
T Consensus       177 ~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~  255 (693)
T 3iuj_A          177 FSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS  255 (693)
T ss_dssp             SCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred             eccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence            3578999 9999988887743             99999877643  2233322   22  23789999998866543  


Q ss_pred             --CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC----CCcEEEEEcCCCce--eeeeccCCCCCc
Q 026679           75 --AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEK--RCGFSLEPSPNT  146 (235)
Q Consensus        75 --dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~--~~~~~~~~~~~~  146 (235)
                        ...+.++|+.+....   ...+..+....... ++++|..|+..+.    .+.|..+|+.++..  ...+..+.  ..
T Consensus       256 ~~~~~i~~~d~~~~~~~---~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~  329 (693)
T 3iuj_A          256 TSGNRLYVKDLSQENAP---LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER--QQ  329 (693)
T ss_dssp             SSCCEEEEEETTSTTCC---CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC--SS
T ss_pred             CCCcEEEEEECCCCCCc---eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC--CC
Confidence              248999998775421   12223344444444 6777776665543    36799999987654  22333332  22


Q ss_pred             ceeeEEeCCCcEEEEeCCC-C--cEEEEEcCCCceeeeec-CCCcceeEEEeecCCCEEEEc--c----cceEEeeCCCC
Q 026679          147 NTEATFTPDGQYVVSGSGD-G--TLHAWNINTRNEVACWN-GNIGVVACLKWAPRRAMFVAA--S----SVLSFWIPNPS  216 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~--~----~~i~iw~~~~~  216 (235)
                      +.  .|++++++|+....+ +  .|++||+..+ ....+. ...+.+..+.++|++..++..  +    +.+..||+.+.
T Consensus       330 ~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          330 VL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             CE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             EE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            33  899999888766554 3  6899998644 344443 234567788888888766544  2    56888888766


Q ss_pred             CCC
Q 026679          217 SNS  219 (235)
Q Consensus       217 ~~~  219 (235)
                      +..
T Consensus       407 ~~~  409 (693)
T 3iuj_A          407 AIS  409 (693)
T ss_dssp             CEE
T ss_pred             eEE
Confidence            543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.35  E-value=1e-09  Score=76.94  Aligned_cols=199  Identities=11%  Similarity=0.076  Sum_probs=133.0

Q ss_pred             hhhhhhcccc--cceeEEEeecCCCeeEEEeccc--eEEEEecCcceeeeeeeccCCce-EEEcCCC-CEEEEEecCCeE
Q 026679            5 RILRYFKGHK--ERVISLCMSPVNDSFMSGSLDH--SVRIWDLRVNACQGILRLRGRPT-VAFDQQG-LVFAVAMEAGAI   78 (235)
Q Consensus         5 ~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~~~~~dg~v   78 (235)
                      +.++++ .|.  .-...+.|++ +.++.+.+.+|  .|+++|+++++.+..+....... ..+.+.+ +++...-.++.+
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence            344455 354  3456889986 55666666654  89999999999998887765432 2223334 444455568999


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC---CcceeeEEeCC
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEATFTPD  155 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~  155 (235)
                      .+||..+.+.  ...+....   .-.  .+.+++..|+.+..++.|.++|..+.+....+....+.   ..++.+.+. +
T Consensus        88 ~v~D~~tl~~--~~ti~~~~---~Gw--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~  159 (243)
T 3mbr_X           88 FVYDLATLTP--RARFRYPG---EGW--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-N  159 (243)
T ss_dssp             EEEETTTTEE--EEEEECSS---CCC--EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             EEEECCcCcE--EEEEeCCC---Cce--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-C
Confidence            9999988664  11222222   123  33467778888878899999999998888777654332   234456665 6


Q ss_pred             CcEEEEeCCCCcEEEEEcCCCceeeeecCC-------------CcceeEEEeecCCCEEEEcccc-eEEeeC
Q 026679          156 GQYVVSGSGDGTLHAWNINTRNEVACWNGN-------------IGVVACLKWAPRRAMFVAASSV-LSFWIP  213 (235)
Q Consensus       156 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~~-i~iw~~  213 (235)
                      |+..+..-.+..|.+.|.++++.+..+...             ......|+++|++..|...++. =++|.+
T Consensus       160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v  231 (243)
T 3mbr_X          160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEI  231 (243)
T ss_dssp             TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEE
Confidence            776666666789999999999988776421             1356899999988777777632 444544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.35  E-value=1.1e-13  Score=104.54  Aligned_cols=183  Identities=14%  Similarity=0.057  Sum_probs=100.0

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC----ceEEEcCCCCEEEEEecCCe
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR----PTVAFDQQGLVFAVAMEAGA   77 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~dg~   77 (235)
                      .+|+.+..++.  +.+.+..+..++..+++++.|+.|+.||.++++.+..+..+..    ....+. .+..+++++.++.
T Consensus        27 ~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~  103 (369)
T 2hz6_A           27 RTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDI  103 (369)
T ss_dssp             TTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEE
T ss_pred             CCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCE
Confidence            35555555554  4555555566777888888999999999988887665543311    111111 3456788888999


Q ss_pred             EEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC-
Q 026679           78 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG-  156 (235)
Q Consensus        78 v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  156 (235)
                      +..||..+++..    .....+.    ...++|++..+++++.++.|+.||.++++....+....    .....++++. 
T Consensus       104 v~a~D~~tG~~~----w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~----~~~~~~~~~~~  171 (369)
T 2hz6_A          104 WYVIDLLTGEKQ----QTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD----YAASLPEDDVD  171 (369)
T ss_dssp             EEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE----ECCBCCCCCTT
T ss_pred             EEEEECCCCcEE----EEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc----ccCccccCCcc
Confidence            999999987752    2221111    23456688889999999999999999998765554322    1223344432 


Q ss_pred             --cEEEEeCCCCcEEEEEcCCCceeeeecCCCcce-eEEEeecCCCE
Q 026679          157 --QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV-ACLKWAPRRAM  200 (235)
Q Consensus       157 --~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~  200 (235)
                        ..+++++.+|.|+.||.++++.+-..... .++ ....+++++..
T Consensus       172 ~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          172 YKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVAFYVWQREGLR  217 (369)
T ss_dssp             CCCCEEEEETSCEEEEECTTTCCEEEEEECS-SCEEEEEECTTSSCE
T ss_pred             ccceEEEECCCCEEEEEECCCCcEEEEecCC-CceEEEEEecCCceE
Confidence              45677888999999999999988776633 344 33455566653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.33  E-value=3e-10  Score=86.29  Aligned_cols=186  Identities=11%  Similarity=0.079  Sum_probs=125.8

Q ss_pred             cCCCee-EEEeccceEEEEecCcc----eeeeeeecc------C---CceEEEcCCCCEEEEEecC------CeEEEEec
Q 026679           24 PVNDSF-MSGSLDHSVRIWDLRVN----ACQGILRLR------G---RPTVAFDQQGLVFAVAMEA------GAIKLFDS   83 (235)
Q Consensus        24 ~~~~~l-~s~~~d~~i~vwd~~~~----~~~~~~~~~------~---~~~~~~~~~~~~l~~~~~d------g~v~i~d~   83 (235)
                      +++++| +++-.+++|.++|+.+.    +..+++...      +   ...+...|+| +++++..+      |.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            667665 55667889999998755    555555311      1   1126788999 77766655      78999999


Q ss_pred             cCCCCCCceeEeec--CCC-cceeEEEEccCCCeEEEec-------------------CCCcEEEEEcCCCceeeeeccC
Q 026679           84 RSYDKGPFDTFLVG--GDT-AEVCDIKFSNDGKSMLLTT-------------------TNNNIYVLDAYGGEKRCGFSLE  141 (235)
Q Consensus        84 ~~~~~~~~~~~~~~--~~~-~~v~~~~~~~~~~~l~~~~-------------------~d~~i~~~d~~~~~~~~~~~~~  141 (235)
                      .+.+.    .....  ... ..-..+.|+|+++.+++..                   .+.+|.+||+.+++....+...
T Consensus       172 ~T~~v----~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          172 YSFEP----LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             TTCCE----EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred             CCCeE----EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence            88764    22222  111 2244688899999888874                   3689999999998888777764


Q ss_pred             CCCCcceeeEE--eCCCcEEEEeC------CCCcEEEEEcCCCce--eeee--cC----------------CCcceeEEE
Q 026679          142 PSPNTNTEATF--TPDGQYVVSGS------GDGTLHAWNINTRNE--VACW--NG----------------NIGVVACLK  193 (235)
Q Consensus       142 ~~~~~i~~~~~--~~~~~~l~~~~------~dg~i~v~d~~~~~~--~~~~--~~----------------~~~~v~~~~  193 (235)
                      ........+.|  +|+++++++++      .+++|.+|....++.  ...+  ..                -...+..|.
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence            22223445555  99999988776      456787766654321  1110  00                024578899


Q ss_pred             eecCCCEEEEcc---cceEEeeCC
Q 026679          194 WAPRRAMFVAAS---SVLSFWIPN  214 (235)
Q Consensus       194 ~~~~~~~l~~~~---~~i~iw~~~  214 (235)
                      ++||+++|.++.   +.|.+|++.
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECS
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEec
Confidence            999999999986   779999985

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.32  E-value=4.4e-10  Score=79.46  Aligned_cols=179  Identities=10%  Similarity=0.045  Sum_probs=124.4

Q ss_pred             eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCC-CEEEEEecCCeEEEEeccCCCCCCceeE
Q 026679           17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTF   94 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~   94 (235)
                      ...+.|+. +.++.+.+.+|.|+++|+++++.+..+ ...... ..+.+++ +++...-.++.+.+||..+.+.  ...+
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~--~~ti  132 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR--ERTT  132 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE--EEEE
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE--EEEE
Confidence            36788873 567778888899999999999988887 544322 2233344 4444555689999999988664  1122


Q ss_pred             eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCC---cceeeEEeCCCcEEEEeCCCCcEEEE
Q 026679           95 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN---TNTEATFTPDGQYVVSGSGDGTLHAW  171 (235)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~v~  171 (235)
                      ....   .-..+  .++++.|+.+..++.|.++|..+.+....+.......   .++.+.|. +|+..+..-.+..|.+.
T Consensus       133 ~~~~---eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          133 RYSG---EGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             ECSS---CCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred             eCCC---ceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence            2221   12233  3678888888889999999999998887776644332   34566776 77766666678899999


Q ss_pred             EcCCCceeeeecCC-------------CcceeEEEeecCCCEEEEcc
Q 026679          172 NINTRNEVACWNGN-------------IGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       172 d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~  205 (235)
                      |.++++.+..+...             ......|+++|++..|...+
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            99999988776421             13568999999876666665

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.27  E-value=1.1e-09  Score=83.62  Aligned_cols=185  Identities=12%  Similarity=0.078  Sum_probs=122.7

Q ss_pred             cCCCeeEEEec-c----ceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEe----------cCCeEEEEeccCCCC
Q 026679           24 PVNDSFMSGSL-D----HSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAM----------EAGAIKLFDSRSYDK   88 (235)
Q Consensus        24 ~~~~~l~s~~~-d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~dg~v~i~d~~~~~~   88 (235)
                      ++++.++.... +    +.|.++|..+++.+..+.....+-++++|+++.++++.          .++.|.++|..+.+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v  161 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP  161 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence            46666665544 2    69999999999999999876666899999999888886          367899999988764


Q ss_pred             CCceeEeecCC-----CcceeEEEEccCCCeEEEecC--CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC-cEEE
Q 026679           89 GPFDTFLVGGD-----TAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG-QYVV  160 (235)
Q Consensus        89 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~  160 (235)
                        .....+.+.     ......+.++|||++++++..  ++.|.++|+.+++.+..+.....      ....|++ +.++
T Consensus       162 --v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~------~~~~p~g~~~~v  233 (426)
T 3c75_H          162 --IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC------YHIFPASPTVFY  233 (426)
T ss_dssp             --EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE------EEEEEEETTEEE
T ss_pred             --EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc------eeeccCCCcEEE
Confidence              112222200     123457899999999998864  57899999999998887765321      2333432 4445


Q ss_pred             EeCCCCcEEEEEcCCCceee----eecCCCcc-eeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          161 SGSGDGTLHAWNINTRNEVA----CWNGNIGV-VACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~----~~~~~~~~-v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      +.+.||.+.+.+..+++...    .+.....+ ...+.+.+++..++..+  +.+.+.|....
T Consensus       234 ~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~  296 (426)
T 3c75_H          234 MNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE  296 (426)
T ss_dssp             EEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred             EEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence            55567777777775554432    12111112 12356788776655444  77888887543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.22  E-value=8.3e-08  Score=68.17  Aligned_cols=200  Identities=9%  Similarity=0.068  Sum_probs=129.7

Q ss_pred             hcccccceeEEEeecCCCeeE-EEeccceEEEEecCcceeeeeeeccC---CceEEEcCCCCEEEEEecCCeEEEEeccC
Q 026679           10 FKGHKERVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      +.+-.+.+..++|+|+++.|+ +...++.|...|.. ++....+....   ...+++.+++.++++.-.++.+.++++..
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            445556799999999876554 56778889999987 88777776543   22388888887767766778899998866


Q ss_pred             CCCCC-ceeEee----cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCC---Cceeeee-----ccCCCCCcceeeEE
Q 026679           86 YDKGP-FDTFLV----GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG---GEKRCGF-----SLEPSPNTNTEATF  152 (235)
Q Consensus        86 ~~~~~-~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~-----~~~~~~~~i~~~~~  152 (235)
                      ..... .....+    .........++|+|+++.|+++.......+|.+..   .......     ........+..+++
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~  180 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF  180 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence            44200 111111    12345578999999998888877765555555431   1111111     11112234688999


Q ss_pred             eCC-CcEEEEeCCCCcEEEEEcCCCceeeeecCCC---------cceeEEEeecCCCEEEEcccc-eEEe
Q 026679          153 TPD-GQYVVSGSGDGTLHAWNINTRNEVACWNGNI---------GVVACLKWAPRRAMFVAASSV-LSFW  211 (235)
Q Consensus       153 ~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~~-i~iw  211 (235)
                      +|. +++++.......|.++|. +++.+..+.-..         .....|+|.++|++.+++-.+ ++.+
T Consensus       181 dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f  249 (255)
T 3qqz_A          181 NQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRF  249 (255)
T ss_dssp             ETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEE
T ss_pred             cCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEE
Confidence            994 666777778888999996 466555543221         256899999999977776543 4444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.22  E-value=1.7e-09  Score=87.92  Aligned_cols=190  Identities=13%  Similarity=0.110  Sum_probs=129.1

Q ss_pred             CCeeEEEec------cceEEEEecCcceeeeeeeccCC----------------------------------ceEEEcCC
Q 026679           26 NDSFMSGSL------DHSVRIWDLRVNACQGILRLRGR----------------------------------PTVAFDQQ   65 (235)
Q Consensus        26 ~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~----------------------------------~~~~~~~~   65 (235)
                      +..++.++.      ++.|+.+|.++++.+..+.....                                  ..++++|+
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~  253 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE  253 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence            345555543      79999999999998876654221                                  13688898


Q ss_pred             CCEEEEEecCC-------------------eEEEEeccCCCCCCceeEeecCCC-------cceeEEEEccCC---CeEE
Q 026679           66 GLVFAVAMEAG-------------------AIKLFDSRSYDKGPFDTFLVGGDT-------AEVCDIKFSNDG---KSML  116 (235)
Q Consensus        66 ~~~l~~~~~dg-------------------~v~i~d~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~---~~l~  116 (235)
                      +.+++.+..++                   .|..+|..+++.  ...+....|.       .....+....+|   ..++
T Consensus       254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~--~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~  331 (677)
T 1kb0_A          254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY--KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVIL  331 (677)
T ss_dssp             TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEE
T ss_pred             CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE--EEEEecCCCcccccccCCCcEEEecccCCcEeeEEE
Confidence            88988887664                   488899988764  2222222221       122223334467   6788


Q ss_pred             EecCCCcEEEEEcCCCceeeeeccCCCC---------C------------------------cceeeEEeCCCcEEEEeC
Q 026679          117 LTTTNNNIYVLDAYGGEKRCGFSLEPSP---------N------------------------TNTEATFTPDGQYVVSGS  163 (235)
Q Consensus       117 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~---------~------------------------~i~~~~~~~~~~~l~~~~  163 (235)
                      .++.+|.++++|..+++.+..+......         .                        .-..++++|++.++++..
T Consensus       332 ~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~  411 (677)
T 1kb0_A          332 HAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPA  411 (677)
T ss_dssp             ECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEE
T ss_pred             EECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeC
Confidence            9999999999999999987655432110         0                        012578999888887653


Q ss_pred             C-------------------------------------------CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCE
Q 026679          164 G-------------------------------------------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM  200 (235)
Q Consensus       164 ~-------------------------------------------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  200 (235)
                      .                                           .|.|..||+.+++.+-.+. +..++....+...+..
T Consensus       412 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~  490 (677)
T 1kb0_A          412 QNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNV  490 (677)
T ss_dssp             EECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTE
T ss_pred             hhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCE
Confidence            2                                           2789999999999887775 3344555566777777


Q ss_pred             EEEcc--cceEEeeCCCCCC
Q 026679          201 FVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       201 l~~~~--~~i~iw~~~~~~~  218 (235)
                      ++.++  +.+++||.++++.
T Consensus       491 v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          491 VFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             EEEECTTSEEEEEETTTCCE
T ss_pred             EEEECCCCcEEEEECCCCce
Confidence            77776  8899999987654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.20  E-value=3e-09  Score=83.53  Aligned_cols=181  Identities=13%  Similarity=0.064  Sum_probs=123.8

Q ss_pred             CCCeeEEEec-cceEEEEecCcceeeeeeeccC---CceEEE-c-CCCCEEEEEe------------------cCCeEEE
Q 026679           25 VNDSFMSGSL-DHSVRIWDLRVNACQGILRLRG---RPTVAF-D-QQGLVFAVAM------------------EAGAIKL   80 (235)
Q Consensus        25 ~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~---~~~~~~-~-~~~~~l~~~~------------------~dg~v~i   80 (235)
                      ||++++.... +.+|.+.|+++.++...+....   ...+++ + |+++++++++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            7777766554 5679999999999888665433   223676 5 8999998885                  2457899


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC--------------------------------------
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN--------------------------------------  122 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------------------------------  122 (235)
                      .|..+.+.  .......+   ....++++|+|+++++.+.+.                                      
T Consensus       180 ID~~t~~v--~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          180 VDADKWEV--AWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EETTTTEE--EEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EECCCCeE--EEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            99887543  12222222   345677999999988887543                                      


Q ss_pred             cEEEEEcCC--Cce-eeeeccCCCCCcceeeEEeCCCcEEEEeC-CCCcEEEEEcCCCc------------eeeeecCCC
Q 026679          123 NIYVLDAYG--GEK-RCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRN------------EVACWNGNI  186 (235)
Q Consensus       123 ~i~~~d~~~--~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~------------~~~~~~~~~  186 (235)
                      .|.+.|.++  ++. +..+....   ...++.++|||+++++++ .+..|.++|+.+.+            ....+. -.
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG  330 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LG  330 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CC
T ss_pred             cEEEEeCcccCCceeEEEEecCC---CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CC
Confidence            377777776  433 33333222   246699999999886655 57899999998653            233333 23


Q ss_pred             cceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          187 GVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       187 ~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                      .....++|+|+| ++.+..   +.+.+|+++.
T Consensus       331 ~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          331 LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             SCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             CCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            467899999999 655553   7899999865

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.19  E-value=1.5e-08  Score=83.46  Aligned_cols=193  Identities=6%  Similarity=0.001  Sum_probs=109.4

Q ss_pred             ceeEEEee-cCCCeeEEEec-c----ceEEEEecCcc-eeee-eeeccCCceEEEcCCCCEEEEEecC-----CeEEEEe
Q 026679           16 RVISLCMS-PVNDSFMSGSL-D----HSVRIWDLRVN-ACQG-ILRLRGRPTVAFDQQGLVFAVAMEA-----GAIKLFD   82 (235)
Q Consensus        16 ~v~~~~~~-~~~~~l~s~~~-d----~~i~vwd~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-----g~v~i~d   82 (235)
                      .+...+|| |||++||-+.. +    ..|+++|+.++ +.+. .+.. ....++|+||++.|+....+     ..|..++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~-~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG-TNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE-ECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC-ceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            67789999 99998775433 2    35999999988 6322 1211 12348899999888877765     2577778


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC---CCcEEEEEcCCCce-e--eeeccCCCCCcceeeEEeCCC
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEK-R--CGFSLEPSPNTNTEATFTPDG  156 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~-~--~~~~~~~~~~~i~~~~~~~~~  156 (235)
                      +.+........+. .........+.|+|||++|+....   ...|+++|+.++.. .  ..+. .........+.|+..+
T Consensus       254 lgt~~~~~~lv~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          254 MGKLQSEDVCLYE-EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR-PREKGVRYDVQMHGTS  331 (751)
T ss_dssp             TTSCGGGCEEEEE-CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS-CCCTTCCEEEEEETTT
T ss_pred             CCCCchhcEEEEe-cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee-cCCCCceEEEeeeeCC
Confidence            7664321111221 122334567899999999887653   44688999887521 1  2222 2222333444444344


Q ss_pred             cEEEEeCCC----CcEEEEEcCCCceeee-ecCCCc--ceeEEEeecCCCEEEEcc---c--ceEEeeC
Q 026679          157 QYVVSGSGD----GTLHAWNINTRNEVAC-WNGNIG--VVACLKWAPRRAMFVAAS---S--VLSFWIP  213 (235)
Q Consensus       157 ~~l~~~~~d----g~i~v~d~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~---~--~i~iw~~  213 (235)
                      .+++....+    ..|..+|+.++..... +..+..  .+..+.+  .+..|+...   +  .+.++++
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEec
Confidence            444444433    3577777764322222 222333  3445554  455555443   3  3666665

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.16  E-value=1.4e-08  Score=75.15  Aligned_cols=194  Identities=14%  Similarity=0.155  Sum_probs=121.3

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecCCeEEEE
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      ++.+..+..+........+.  +..+..++.++.+..+|.. ++..........  ..+...+++. ++.++.++.+..+
T Consensus        87 g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~  162 (330)
T 3hxj_A           87 GTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAI  162 (330)
T ss_dssp             GGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEE
T ss_pred             CcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEE
Confidence            44444444433333333443  4567778888999999987 766655554332  2356666666 6667788999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                      |.. ++.    ..........+.++...+++. +..++  +.|..+| .+++....+....  ..+.++...++|.+ ..
T Consensus       163 d~~-g~~----~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~l-~v  230 (330)
T 3hxj_A          163 NPD-GTE----KWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISEDGTI-YV  230 (330)
T ss_dssp             CTT-SCE----EEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTTSCE-EE
T ss_pred             CCC-CCE----eEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCC--cceeceEECCCCeE-EE
Confidence            987 432    222223344566677777776 44555  7899999 6776665544332  44778888888764 44


Q ss_pred             eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCC
Q 026679          162 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPN  214 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~  214 (235)
                      ++.++.|..+|. +++.+..+......+..+...+++.+.+... +.+..++.+
T Consensus       231 ~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~  283 (330)
T 3hxj_A          231 TSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPD  283 (330)
T ss_dssp             EETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTT
T ss_pred             EcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCC
Confidence            556777888874 6666666554444455666776777666655 578888864

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.16  E-value=6.3e-09  Score=77.07  Aligned_cols=187  Identities=12%  Similarity=0.135  Sum_probs=121.9

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCC
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP   90 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~   90 (235)
                      +...+.++...+++. +..++.++.|..+|.. ++....+....  ...+...+++.+++. +  +.+..+| .+++.  
T Consensus       135 ~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~--  206 (330)
T 3hxj_A          135 KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTE--  206 (330)
T ss_dssp             SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCE--
T ss_pred             CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcE--
Confidence            334455566665555 6667778999999988 77666655433  233666677775544 4  7889998 44332  


Q ss_pred             ceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEE
Q 026679           91 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA  170 (235)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  170 (235)
                        ..........+.++...++|. +.+++.++.+..+|. +++....+....  ..+..+.+.+++ .|..++.+|.|..
T Consensus       207 --~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~--~~~~~~~~~~~g-~l~v~t~~ggl~~  279 (330)
T 3hxj_A          207 --KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGK--RIESSPVIGNTD-TIYFGSYDGHLYA  279 (330)
T ss_dssp             --EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSS--CCCSCCEECTTS-CEEEECTTCEEEE
T ss_pred             --EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCC--CccccceEcCCC-eEEEecCCCCEEE
Confidence              333333345677888888775 666777888988984 555554444332  224445666566 4667777888999


Q ss_pred             EEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679          171 WNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP  215 (235)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~  215 (235)
                      +|. +++.+..+......+.++...+++.+.+.+. |.+++...+.
T Consensus       280 ~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          280 INP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             ECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred             ECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence            995 7777766665556677888888888777666 7787776544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.14  E-value=1.1e-08  Score=83.14  Aligned_cols=181  Identities=14%  Similarity=0.087  Sum_probs=125.4

Q ss_pred             eEEEeecCCCeeEEEeccc-------------------eEEEEecCcceeeeeeeccCC----------ce-EEEcCCC-
Q 026679           18 ISLCMSPVNDSFMSGSLDH-------------------SVRIWDLRVNACQGILRLRGR----------PT-VAFDQQG-   66 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~~~----------~~-~~~~~~~-   66 (235)
                      ..++++|++..++.+..++                   .|..+|.++++.+..++....          ++ +....+| 
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            4678889888888877664                   599999999998887765321          22 3333467 


Q ss_pred             --CEEEEEecCCeEEEEeccCCCCCCceeEeecC---------CCcce------------------------eEEEEccC
Q 026679           67 --LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG---------DTAEV------------------------CDIKFSND  111 (235)
Q Consensus        67 --~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~---------~~~~v------------------------~~~~~~~~  111 (235)
                        ..++.++.+|.++++|..+++...  ......         ...++                        ..++++|+
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~  403 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFIS--AKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ  403 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEE--EEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEec--cccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence              678999999999999998876411  111100         00001                        15688898


Q ss_pred             CCeEEEecC-------------------------------------------CCcEEEEEcCCCceeeeeccCCCCCcce
Q 026679          112 GKSMLLTTT-------------------------------------------NNNIYVLDAYGGEKRCGFSLEPSPNTNT  148 (235)
Q Consensus       112 ~~~l~~~~~-------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~  148 (235)
                      +..+++...                                           .+.|..||+.+++.+-.+....   +..
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~---~~~  480 (677)
T 1kb0_A          404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS---PWN  480 (677)
T ss_dssp             TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS---SCC
T ss_pred             CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC---CCc
Confidence            887776532                                           2779999999999877665432   244


Q ss_pred             eeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCC-cceeEEEeecCCCEEEE
Q 026679          149 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAMFVA  203 (235)
Q Consensus       149 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~  203 (235)
                      ...+...+..++.++.||.+++||.++++.+..+.... ..-.-+.|.++|+.+++
T Consensus       481 ~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          481 GGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            45677788889999999999999999999998886433 22334566678864443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.14  E-value=1.2e-08  Score=83.11  Aligned_cols=181  Identities=13%  Similarity=0.146  Sum_probs=121.8

Q ss_pred             cceEEEEecCcceeeeeeeccC---------------------------------CceEEEcCCCCEEEEEecCCe----
Q 026679           35 DHSVRIWDLRVNACQGILRLRG---------------------------------RPTVAFDQQGLVFAVAMEAGA----   77 (235)
Q Consensus        35 d~~i~vwd~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~l~~~~~dg~----   77 (235)
                      ++.|+.||.++++.+..+....                                 -..++++|+..+++++..++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            7899999999999877665210                                 013788888899999887764    


Q ss_pred             ---------------EEEEeccCCCCCCceeEeecCCC-------cceeEEEEccCCC---eEEEecCCCcEEEEEcCCC
Q 026679           78 ---------------IKLFDSRSYDKGPFDTFLVGGDT-------AEVCDIKFSNDGK---SMLLTTTNNNIYVLDAYGG  132 (235)
Q Consensus        78 ---------------v~i~d~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~  132 (235)
                                     |..+|..+++.  ...+....|.       .+........+|+   .++.++.+|.++++|.+++
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~--~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  339 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEY--VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG  339 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCE--EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCce--eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence                           99999998774  1222222221       1222222233554   7888999999999999999


Q ss_pred             ceeeeeccCCC-------------------------------------CCcceeeEEeCCCcEEEEeCC-----------
Q 026679          133 EKRCGFSLEPS-------------------------------------PNTNTEATFTPDGQYVVSGSG-----------  164 (235)
Q Consensus       133 ~~~~~~~~~~~-------------------------------------~~~i~~~~~~~~~~~l~~~~~-----------  164 (235)
                      +.+........                                     ...-..++|+|+..++++...           
T Consensus       340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~  419 (689)
T 1yiq_A          340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPE  419 (689)
T ss_dssp             CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSS
T ss_pred             CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccc
Confidence            88743322110                                     001123789998887776521           


Q ss_pred             ----------------------------------CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cce
Q 026679          165 ----------------------------------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL  208 (235)
Q Consensus       165 ----------------------------------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i  208 (235)
                                                        +|.|+.||+.+++.+-.+..+ .+...-.+...+.+++.++  +.+
T Consensus       420 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l  498 (689)
T 1yiq_A          420 APKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRV  498 (689)
T ss_dssp             CCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEE
T ss_pred             cccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcE
Confidence                                              377999999999988777644 3334445666777777776  789


Q ss_pred             EEeeCCCCCC
Q 026679          209 SFWIPNPSSN  218 (235)
Q Consensus       209 ~iw~~~~~~~  218 (235)
                      +.||.++++.
T Consensus       499 ~a~D~~tG~~  508 (689)
T 1yiq_A          499 IAYAADTGEK  508 (689)
T ss_dssp             EEEETTTCCE
T ss_pred             EEEECCCCcc
Confidence            9999987754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.13  E-value=1.8e-08  Score=82.22  Aligned_cols=182  Identities=13%  Similarity=0.133  Sum_probs=123.5

Q ss_pred             EEEeecCCCeeEEEeccce-------------------EEEEecCcceeeeeeeccCC---------c-e-EEEcCCCC-
Q 026679           19 SLCMSPVNDSFMSGSLDHS-------------------VRIWDLRVNACQGILRLRGR---------P-T-VAFDQQGL-   67 (235)
Q Consensus        19 ~~~~~~~~~~l~s~~~d~~-------------------i~vwd~~~~~~~~~~~~~~~---------~-~-~~~~~~~~-   67 (235)
                      .++++|++.+++.+..++.                   |..+|.++++.+..++....         . + .....+|+ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            6788888888888887764                   99999999998887765311         1 1 22223554 


Q ss_pred             --EEEEEecCCeEEEEeccCCCCCCce-------eEee-----------------cCCC-----------cceeEEEEcc
Q 026679           68 --VFAVAMEAGAIKLFDSRSYDKGPFD-------TFLV-----------------GGDT-----------AEVCDIKFSN  110 (235)
Q Consensus        68 --~l~~~~~dg~v~i~d~~~~~~~~~~-------~~~~-----------------~~~~-----------~~v~~~~~~~  110 (235)
                        .++.++.+|.++++|.++++.....       ....                 ....           ..-..++++|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence              7888999999999999887641000       0000                 0000           0011367888


Q ss_pred             CCCeEEEecC---------------------------------------------CCcEEEEEcCCCceeeeeccCCCCC
Q 026679          111 DGKSMLLTTT---------------------------------------------NNNIYVLDAYGGEKRCGFSLEPSPN  145 (235)
Q Consensus       111 ~~~~l~~~~~---------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~  145 (235)
                      +...+++...                                             +|.|..||+.+++.+-.+....   
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~---  475 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT---  475 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS---
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC---
Confidence            8777766421                                             3779999999999887766543   


Q ss_pred             cceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCc-ceeEEEeecCCCEEEE
Q 026679          146 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRAMFVA  203 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~  203 (235)
                      +.....+...+.+++.++.||.++.||.++|+.+..++...+ .-.-+.|..+|+..++
T Consensus       476 ~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          476 IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            233346667788999999999999999999999988864432 2234667788875443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.11  E-value=9.1e-10  Score=82.72  Aligned_cols=87  Identities=13%  Similarity=0.118  Sum_probs=67.3

Q ss_pred             EEEccCCCeEEEecC-C--------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE-EEEeC-CCCcEEEEEcC
Q 026679          106 IKFSNDGKSMLLTTT-N--------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY-VVSGS-GDGTLHAWNIN  174 (235)
Q Consensus       106 ~~~~~~~~~l~~~~~-d--------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~-~dg~i~v~d~~  174 (235)
                      ++++|+++.++++.. .        +.+.++|+.+.+.+..+....   ....++|+|||++ +++.. .++.|.++|+.
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            689999998887643 2        356799999999888776553   3688999999984 55555 58999999999


Q ss_pred             CCceeeeecCCCcceeEEEeec
Q 026679          175 TRNEVACWNGNIGVVACLKWAP  196 (235)
Q Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~  196 (235)
                      +++.+.++... .....+++.+
T Consensus       346 t~kvv~~I~vg-~~P~~i~~~~  366 (368)
T 1mda_H          346 SDQDQSSVELD-KGPESLSVQN  366 (368)
T ss_dssp             SCEEEEECCCC-SCCCEEECCC
T ss_pred             CCcEEEEEECC-CCCCEEEeec
Confidence            99999988755 3456676654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.09  E-value=5.4e-08  Score=72.08  Aligned_cols=185  Identities=10%  Similarity=0.056  Sum_probs=112.7

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec---------------------cCCceEEEcCCCCEEEEEec
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL---------------------RGRPTVAFDQQGLVFAVAME   74 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~   74 (235)
                      ...+++|.+++++++++..++.|..||..++........                     .....+++.+++..|+++..
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            456788999988788888899999999876543321110                     11223888873344555555


Q ss_pred             CCeEEEEeccCCCCCCceeEeecC-CCcceeEEEEcc-CCCeEEEecC-----------------CCcEEEEEcCCCcee
Q 026679           75 AGAIKLFDSRSYDKGPFDTFLVGG-DTAEVCDIKFSN-DGKSMLLTTT-----------------NNNIYVLDAYGGEKR  135 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~~~d~~~~~~~  135 (235)
                      .+.+..+|..+...... .....+ .......+++.+ +|+..++...                 ++.|..||..+++..
T Consensus       100 ~~~i~~~d~~~g~~~~~-~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  178 (322)
T 2fp8_A          100 YYHLSVVGSEGGHATQL-ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT  178 (322)
T ss_dssp             TTEEEEECTTCEECEEE-ESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred             CCCEEEEeCCCCEEEEe-cccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence            55688888664322110 000111 113467899999 8876665432                 367999998766543


Q ss_pred             eeeccCCCCCcceeeEEeCCCcEEEEe-CCCCcEEEEEcCCCc--eeeeecCCCcceeEEEeecCCCEEEEcc
Q 026679          136 CGFSLEPSPNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRN--EVACWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      .....-   .....++++|+++.|+.+ ...+.|.+|++....  ....+....+ ...+++.++|++.++..
T Consensus       179 ~~~~~~---~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          179 LLLKEL---HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             EEEEEE---SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred             EeccCC---ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence            222111   224669999999866555 566889999986421  1111111223 78899999998777653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.09  E-value=6.2e-07  Score=64.47  Aligned_cols=194  Identities=12%  Similarity=0.049  Sum_probs=118.4

Q ss_pred             cceeEEEeecCCCeeE-EEeccceEEEEecCcceeeeeeecc--CCceEEEcCCCCEEEEE-ecCCeEEEEeccCCCCCC
Q 026679           15 ERVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLR--GRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGP   90 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~   90 (235)
                      .....++|+++++.|+ +-...+.|..++.........+...  ....+++++++..++.+ ...+.|.++++.....  
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--  113 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--  113 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--
Confidence            3467899999765555 4445789999998765443333222  22348999976555544 4578999999865332  


Q ss_pred             ceeEeecCCCcceeEEEEccCCCeEEEecC---CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE-EEeCCCC
Q 026679           91 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGDG  166 (235)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg  166 (235)
                        .............++++|++..|+.+..   .+.|..+++.... ...+. .........++++|++..| ++-...+
T Consensus       114 --~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~-~~~~~~P~gia~d~~~~~lyv~d~~~~  189 (267)
T 1npe_A          114 --RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA-QDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (267)
T ss_dssp             --EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE-CTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             --EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE-ECCCCCCcEEEEcCCCCEEEEEECCCC
Confidence              1112222245688999997666655553   3688888875432 22221 1122346889999987665 4555678


Q ss_pred             cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCC
Q 026679          167 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS  217 (235)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~  217 (235)
                      .|.++|.........+.. ......++..  +..|..+.   +.|.+++.++.+
T Consensus       190 ~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~  240 (267)
T 1npe_A          190 RAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK  240 (267)
T ss_dssp             EEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCC
Confidence            899999865443333332 2334566654  44444443   668888887553

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.07  E-value=3.9e-07  Score=65.54  Aligned_cols=182  Identities=13%  Similarity=0.117  Sum_probs=110.1

Q ss_pred             CeeEEEeccceEEEEecCcceee-----eeeec--cCCceEEEcCCCCEEEEE-ecCCeEEEEeccCCCCCCceeEeecC
Q 026679           27 DSFMSGSLDHSVRIWDLRVNACQ-----GILRL--RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGG   98 (235)
Q Consensus        27 ~~l~s~~~d~~i~vwd~~~~~~~-----~~~~~--~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~   98 (235)
                      .+|+.+.. +.|+.++++.....     ..+..  .....+++++++..|+.+ ...+.|..++......    ......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~----~~~~~~   76 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----TTIIRQ   76 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----EEEECT
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc----EEEEEC
Confidence            34554443 47888888654321     11221  122348999966555554 4578999999876432    222222


Q ss_pred             CCcceeEEEEccCCCeEEEe-cCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC---CCcEEEEEcC
Q 026679           99 DTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNIN  174 (235)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~  174 (235)
                      .......++++|++..|+.+ ...+.|.++++..........  ........++++|++..|+.+..   .+.|..+++.
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD--TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE--CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            22467889999976555544 457889999986543222221  11234688999996555544433   4688888875


Q ss_pred             CCceeeeec-CCCcceeEEEeecCCCEEEEcc---cceEEeeCCCC
Q 026679          175 TRNEVACWN-GNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS  216 (235)
Q Consensus       175 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~  216 (235)
                       +.....+. ........++++|++..|..+.   +.|.++++++.
T Consensus       155 -g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~  199 (267)
T 1npe_A          155 -GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (267)
T ss_dssp             -SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             -CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence             33333322 2234678999999887776665   56888888654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.06  E-value=6e-08  Score=73.32  Aligned_cols=182  Identities=9%  Similarity=0.050  Sum_probs=113.1

Q ss_pred             CCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcc
Q 026679           25 VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE  102 (235)
Q Consensus        25 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  102 (235)
                      ++..++.++.++.|..+|.++++.+..........  ...  .+..+++++.++.+..+|..+++.    ..........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~----~W~~~~~~~~  175 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAV----KWTVNLDMPS  175 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCE----EEEEECCC--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcE----EEEEeCCCCc
Confidence            35678888889999999999999887766543221  222  245788888999999999988764    2221111110


Q ss_pred             e-----eEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCc-----ceeeEEeC--CCcEEEEeCCCCcEEE
Q 026679          103 V-----CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT-----NTEATFTP--DGQYVVSGSGDGTLHA  170 (235)
Q Consensus       103 v-----~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-----i~~~~~~~--~~~~l~~~~~dg~i~v  170 (235)
                      .     .....  .+..+++++.++.+..+|..+++.............     +..+.-.|  .+..++.++.++.+..
T Consensus       176 ~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          176 LSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA  253 (376)
T ss_dssp             ---CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred             eeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence            0     11122  245688888899999999999988766654321100     00011111  3457777888999999


Q ss_pred             EEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCCC
Q 026679          171 WNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSS  217 (235)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~  217 (235)
                      +|.++++.+.....  .....+... ++..++... +.+..+|.++++
T Consensus       254 ~d~~tG~~~w~~~~--~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          254 LDLRSGQIMWKREL--GSVNDFIVD-GNRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             EETTTCCEEEEECC--CCEEEEEEE-TTEEEEEETTCCEEEEETTTCC
T ss_pred             EECCCCcEEeeccC--CCCCCceEE-CCEEEEEcCCCeEEEEECCCCc
Confidence            99999988766542  233444443 333333333 778888887654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.01  E-value=1.9e-07  Score=69.16  Aligned_cols=192  Identities=14%  Similarity=0.112  Sum_probs=114.0

Q ss_pred             ceeEEEeec-CCCeeEEEeccceEEEEecCcceeeeeeec------cCCceEEEcC-CCCEEEEEec-------------
Q 026679           16 RVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRL------RGRPTVAFDQ-QGLVFAVAME-------------   74 (235)
Q Consensus        16 ~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~------~~~~~~~~~~-~~~~l~~~~~-------------   74 (235)
                      ....+++.+ +++ |+.+...+.|..+|..++........      .....+++.+ +|+++++...             
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            468899997 554 55554445588888765543222111      1122388999 8887666432             


Q ss_pred             ----CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcCCCc--eeeeeccCCCCCcc
Q 026679           75 ----AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGE--KRCGFSLEPSPNTN  147 (235)
Q Consensus        75 ----dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~--~~~~~~~~~~~~~i  147 (235)
                          ++.+..+|..+.+.    . ...........++++|+++.|+.+ ...+.|..|++....  ....+. . ..+ .
T Consensus       160 ~~~~~g~v~~~d~~~~~~----~-~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~-~~g-P  231 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKET----T-LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-K-IPN-P  231 (322)
T ss_dssp             HTCCCEEEEEEETTTTEE----E-EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-E-CSS-E
T ss_pred             ccCCCceEEEEeCCCCEE----E-EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-e-CCC-C
Confidence                36788888765432    1 111111345678999999866655 556899999987531  111111 1 113 6


Q ss_pred             eeeEEeCCCcEEEEeCC----------CCcEEEEEcCCCceeeeecCCC----cceeEEEeecCCCEEEEcc--cceEEe
Q 026679          148 TEATFTPDGQYVVSGSG----------DGTLHAWNINTRNEVACWNGNI----GVVACLKWAPRRAMFVAAS--SVLSFW  211 (235)
Q Consensus       148 ~~~~~~~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~--~~i~iw  211 (235)
                      ..++++++|++.++...          .+.|..+|. .++.+..+....    ..+..+.+ .+++++++..  +.|..+
T Consensus       232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~  309 (322)
T 2fp8_A          232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGIL  309 (322)
T ss_dssp             EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred             CCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEE
Confidence            77999999987666544          466888886 577766665332    34667766 4566655543  668888


Q ss_pred             eCCCCCC
Q 026679          212 IPNPSSN  218 (235)
Q Consensus       212 ~~~~~~~  218 (235)
                      +++....
T Consensus       310 ~~~~~~~  316 (322)
T 2fp8_A          310 VYDKKGN  316 (322)
T ss_dssp             EC-----
T ss_pred             ecccccC
Confidence            8765433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.00  E-value=3e-07  Score=69.52  Aligned_cols=183  Identities=10%  Similarity=0.034  Sum_probs=112.7

Q ss_pred             CCeeEEEeccceEEEEecCcceeeeeeeccCC----------ceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEe
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGR----------PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL   95 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~   95 (235)
                      +..++.++.++.|..+|.++++.+........          .......++..+++++.++.+..+|..+++.    ...
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~----~W~  128 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTV----AWQ  128 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCE----EEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCE----EEE
Confidence            56788888899999999999988877665321          1122223566788888999999999988764    222


Q ss_pred             ecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCC---cceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679           96 VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN---TNTEATFTPDGQYVVSGSGDGTLHAWN  172 (235)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~v~d  172 (235)
                      .............  .+..+++++.++.|..+|..+++....+.......   ........  +..++.++.++.+..+|
T Consensus       129 ~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d  204 (376)
T 3q7m_A          129 TKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL  204 (376)
T ss_dssp             EECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred             EeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence            2111111111122  24468888899999999999998877665432210   00122222  45678888899999999


Q ss_pred             cCCCceeeeecCCCc-------c---e-eEEEeecCCCEEEEcc-cceEEeeCCCCC
Q 026679          173 INTRNEVACWNGNIG-------V---V-ACLKWAPRRAMFVAAS-SVLSFWIPNPSS  217 (235)
Q Consensus       173 ~~~~~~~~~~~~~~~-------~---v-~~~~~~~~~~~l~~~~-~~i~iw~~~~~~  217 (235)
                      ..+++.+........       .   + ..... .++..++.+. +.+..+|.++++
T Consensus       205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~~g~l~~~d~~tG~  260 (376)
T 3q7m_A          205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAYNGNLTALDLRSGQ  260 (376)
T ss_dssp             TTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECTTSCEEEEETTTCC
T ss_pred             CCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEecCcEEEEEECCCCc
Confidence            999988766542210       0   1 11111 1344444332 778888876554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.99  E-value=2.3e-07  Score=66.26  Aligned_cols=162  Identities=7%  Similarity=0.020  Sum_probs=106.4

Q ss_pred             eeeeeeeccCC---ceEEEcCCCCEEEEEec--CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEE-ecC
Q 026679           47 ACQGILRLRGR---PTVAFDQQGLVFAVAME--AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TTT  120 (235)
Q Consensus        47 ~~~~~~~~~~~---~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~  120 (235)
                      +.+..+.....   .-+++++++.++++.+.  ++.|.++|+.+++.  .....+..+ .....+++.  ++.|+. .-.
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v--~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV--ENIHKMDDS-YFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE--EEEEECCTT-CCEEEEEEE--TTEEEEEETT
T ss_pred             eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE--EEEEecCCC-cceEEEEEe--CCEEEEEEec
Confidence            44555554433   23899998755555443  57999999998764  112222222 122344554  445554 445


Q ss_pred             CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCC--c---ceeEEEee
Q 026679          121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI--G---VVACLKWA  195 (235)
Q Consensus       121 d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~---~v~~~~~~  195 (235)
                      ++.+.++|..+.+.+..+... .+   ....+++||+.|+++..++.|.++|..+.+.+..+....  .   .+..+.|.
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g-~~---~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~  160 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQ-MK---DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI  160 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECC-SS---SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEECC-CC---CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence            889999999999988887654 11   124577788877777778999999999988887775321  1   35678888


Q ss_pred             cCCCEEEEcc--cceEEeeCCCCCC
Q 026679          196 PRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       196 ~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                       ++...+...  +.|.+.|..+.+.
T Consensus       161 -dg~lyvn~~~~~~V~vID~~tg~V  184 (266)
T 2iwa_A          161 -NGEVWANIWQTDCIARISAKDGTL  184 (266)
T ss_dssp             -TTEEEEEETTSSEEEEEETTTCCE
T ss_pred             -CCEEEEecCCCCeEEEEECCCCcE
Confidence             675554442  7799999987654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.92  E-value=5.7e-07  Score=63.70  Aligned_cols=159  Identities=13%  Similarity=0.092  Sum_probs=104.4

Q ss_pred             eeeeeeccCCc---eEEEcCCCCEEEEEecCC--eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CC
Q 026679           48 CQGILRLRGRP---TVAFDQQGLVFAVAMEAG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TN  121 (235)
Q Consensus        48 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d  121 (235)
                      .+..+......   -+.|+ ++.++.+.+.+|  .|+.+|+.+++.    ...... ..........++++.|+... .+
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv----~~~~~l-~~~~FgeGit~~g~~ly~ltw~~  106 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT----LQQIEL-GKRYFGEGISDWKDKIVGLTWKN  106 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE----EEEEEC-CTTCCEEEEEEETTEEEEEESSS
T ss_pred             EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE----EEEEec-CCccceeEEEEeCCEEEEEEeeC
Confidence            45555444433   27887 677777777766  899999998774    222211 12233322333455555554 58


Q ss_pred             CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC--Ccc---eeEEEeec
Q 026679          122 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN--IGV---VACLKWAP  196 (235)
Q Consensus       122 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~---v~~~~~~~  196 (235)
                      +.+.+||..+.+.+..+.....     ...++++++.|+.+..++.|.++|..+.+.+..+...  ..+   +..+.|. 
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~~e-----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-  180 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYDGE-----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-  180 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECSSC-----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred             CEEEEEECccCcEEEEEECCCC-----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence            8999999999999988887542     2345567888877777888999999999888777542  223   3457776 


Q ss_pred             CCCEEEEcc--cceEEeeCCCCCC
Q 026679          197 RRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       197 ~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      +|+..+..-  +.|.+.|.++++.
T Consensus       181 ~G~lyan~w~~~~I~vIDp~tG~V  204 (262)
T 3nol_A          181 DGEIFANVWQTNKIVRIDPETGKV  204 (262)
T ss_dssp             TTEEEEEETTSSEEEEECTTTCBE
T ss_pred             CCEEEEEEccCCeEEEEECCCCcE
Confidence            666554442  6688888877654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.92  E-value=2.5e-06  Score=62.69  Aligned_cols=194  Identities=12%  Similarity=0.078  Sum_probs=114.2

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEecCC--eEEEEeccCCCCCCc
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAMEAG--AIKLFDSRSYDKGPF   91 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~   91 (235)
                      .....++|+++++++++-...+.|..||.... ....+.....+ .+++.++++++++.....  .+..+|..+++.   
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~---  107 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV---  107 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE---
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE---
Confidence            45678999999887777667889999997653 33333333333 389999999666554332  466667655442   


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce-eeee-------ccCCCCCcceeeEEeCCCcEEE-Ee
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-RCGF-------SLEPSPNTNTEATFTPDGQYVV-SG  162 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~-------~~~~~~~~i~~~~~~~~~~~l~-~~  162 (235)
                      ..............++..+++..+++-..++.|+.+|...++. +...       ...........+  +|+++.|+ +-
T Consensus       108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d  185 (306)
T 2p4o_A          108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN  185 (306)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred             EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence            1111111122334455555555455544688999999865421 1100       001111223444  88887665 44


Q ss_pred             CCCCcEEEEEcCC-Cce--eeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          163 SGDGTLHAWNINT-RNE--VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       163 ~~dg~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      ...+.|.+|++.. ++.  ...+. .......++++++|+++++..  +.|.+++.+.
T Consensus       186 ~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G  242 (306)
T 2p4o_A          186 TEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  242 (306)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             CCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence            5678899999864 322  11111 113467899999998776664  6688888764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.91  E-value=4e-06  Score=62.80  Aligned_cols=196  Identities=9%  Similarity=-0.004  Sum_probs=117.4

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEE-ecCCeEEEEeccCCCCCCce
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFD   92 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~   92 (235)
                      ..-+|.+..++ .+|+.+ ....|+..++..............+. ++|++.+..|+.. ...+.|..+++.....    
T Consensus        34 d~~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----  107 (349)
T 3v64_C           34 DRRSCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----  107 (349)
T ss_dssp             TSSCEEESSSC-CEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----
T ss_pred             CCCcccccccC-ceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc----
Confidence            34456655553 334333 34568888876655444443333333 8999766555554 4678899998876542    


Q ss_pred             eEeecCCCcceeEEEEccCCCeE-EEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE-EeCCC-CcEE
Q 026679           93 TFLVGGDTAEVCDIKFSNDGKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGD-GTLH  169 (235)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d-g~i~  169 (235)
                      .............+++.+.+..| ++-...+.|.+.++.........  .........++++|.+..|+ +-... +.|.
T Consensus       108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~--~~~l~~P~~iavdp~~g~ly~td~~~~~~I~  185 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--WQSLEKPRAIALHPMEGTIYWTDWGNTPRIE  185 (349)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--CTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE--eCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence            22222222345678898755444 55555788999998654332222  22223468899999655554 44444 7899


Q ss_pred             EEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679          170 AWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN  218 (235)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~  218 (235)
                      .+++............-.....|+++|++..|..+.   +.|..+++++...
T Consensus       186 r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~  237 (349)
T 3v64_C          186 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR  237 (349)
T ss_dssp             EEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce
Confidence            998754332222222334578999999877777665   5688888876543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.90  E-value=6e-06  Score=60.94  Aligned_cols=181  Identities=9%  Similarity=-0.005  Sum_probs=109.0

Q ss_pred             ceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEE-EecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCC
Q 026679           36 HSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAV-AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK  113 (235)
Q Consensus        36 ~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  113 (235)
                      ..|+..|+...+....+.....+ .++|++.+..|+. -...+.|..+++......................+++.+.+.
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            46888998877655555433333 3899986655554 455689999998752100011112222223457889987555


Q ss_pred             eE-EEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-C-CcEEEEEcCCCceeeee-cCCCcce
Q 026679          114 SM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-D-GTLHAWNINTRNEVACW-NGNIGVV  189 (235)
Q Consensus       114 ~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~v~d~~~~~~~~~~-~~~~~~v  189 (235)
                      .| ++-...+.|.++++...........  .......++++|.+..|+.+.. . +.|..+++. +.....+ ...-...
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P  166 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWP  166 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCE
T ss_pred             eEEEEECCCCEEEEEeCCCCceEEEEEC--CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCc
Confidence            45 4446678999999865433322221  2234688999996665554433 3 688888874 4433333 2233467


Q ss_pred             eEEEeecCCCEEEEcc---cceEEeeCCCCCCC
Q 026679          190 ACLKWAPRRAMFVAAS---SVLSFWIPNPSSNS  219 (235)
Q Consensus       190 ~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~~  219 (235)
                      ..|+++|++..|..++   +.|..+++++....
T Consensus       167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~  199 (316)
T 1ijq_A          167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  199 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             eEEEEeccCCEEEEEECCCCeEEEEecCCCceE
Confidence            8999999887777665   56888888765443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.88  E-value=1.2e-06  Score=64.35  Aligned_cols=184  Identities=10%  Similarity=0.004  Sum_probs=107.6

Q ss_pred             cceeEEEeecCCCeeEEEecc-c-eEEEEecCcceeeeeeeccCC---ceEEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           15 ERVISLCMSPVNDSFMSGSLD-H-SVRIWDLRVNACQGILRLRGR---PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d-~-~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      .....+++.++|+++++.... + .|..+|..+++..........   ..++..+++..+++-..++.|..+|.......
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            357789999999865554332 2 466677777765443332221   11444455544444445888888887643110


Q ss_pred             CceeE-------eecCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcCC-Cce--eeeeccCCCCCcceeeEEeCCCcE
Q 026679           90 PFDTF-------LVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYG-GEK--RCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        90 ~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                       ....       .....-.....+  +|+++.|+.+ ...+.|..|++.. ++.  ...+...   .....++++++|++
T Consensus       152 -v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l  225 (306)
T 2p4o_A          152 -IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNL  225 (306)
T ss_dssp             -EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCE
T ss_pred             -EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCE
Confidence             0000       000111234445  7888766555 4578899999874 322  1111111   23566999999998


Q ss_pred             EEEeCCCCcEEEEEcCCCceee--eecCCCcceeEEEee---cCCCEEEEcc
Q 026679          159 VVSGSGDGTLHAWNINTRNEVA--CWNGNIGVVACLKWA---PRRAMFVAAS  205 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~---~~~~~l~~~~  205 (235)
                      +++....+.|.++|.. ++...  .+......+++++|.   |++..|..++
T Consensus       226 ~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          226 YGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             EEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             EEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence            8777778899999974 65522  333333568999998   8877666554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.87  E-value=6.9e-07  Score=63.31  Aligned_cols=159  Identities=12%  Similarity=0.015  Sum_probs=104.7

Q ss_pred             eeeeeeeccCCc---eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEE-ecCCC
Q 026679           47 ACQGILRLRGRP---TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TTTNN  122 (235)
Q Consensus        47 ~~~~~~~~~~~~---~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~  122 (235)
                      +.+..+......   -+.|+ ++.++.+.+.+|.|+.+|+.+++...  .. +.. ....-.+++  +++.|+. .-.++
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~--~~-l~~-~~FgeGit~--~g~~Ly~ltw~~~  116 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVW--ME-RLG-NIFAEGLAS--DGERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSE--EE-ECT-TCCEEEEEE--CSSCEEEEESSSC
T ss_pred             EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEe--EE-CCC-CcceeEEEE--eCCEEEEEEccCC
Confidence            345555444433   27776 46677777888999999999987522  22 322 111123444  4444444 44688


Q ss_pred             cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecC--CCc---ceeEEEeecC
Q 026679          123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG--NIG---VVACLKWAPR  197 (235)
Q Consensus       123 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~---~v~~~~~~~~  197 (235)
                      .+.+||..+.+.+..+......     ..++++++.|+.+..++.|.++|..+.+.+..+..  +..   .+..+.|. +
T Consensus       117 ~v~V~D~~Tl~~~~ti~~~~eG-----wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d  190 (268)
T 3nok_A          117 LLFTWSGMPPQRERTTRYSGEG-----WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N  190 (268)
T ss_dssp             EEEEEETTTTEEEEEEECSSCC-----CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             EEEEEECCcCcEEEEEeCCCce-----eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence            9999999999999888875331     34446788887777789999999999988877753  222   34567777 6


Q ss_pred             CCEEEEcc--cceEEeeCCCCCC
Q 026679          198 RAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       198 ~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      |+..+..-  +.|.+.|.++++.
T Consensus       191 G~lyanvw~s~~I~vIDp~TG~V  213 (268)
T 3nok_A          191 GVIYANIWHSSDVLEIDPATGTV  213 (268)
T ss_dssp             TEEEEEETTCSEEEEECTTTCBE
T ss_pred             CEEEEEECCCCeEEEEeCCCCcE
Confidence            65554442  6688888877654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.84  E-value=8e-06  Score=62.34  Aligned_cols=191  Identities=9%  Similarity=-0.030  Sum_probs=115.4

Q ss_pred             eeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEE-ecCCeEEEEeccCCCCCCceeEeecCCCcceeE
Q 026679           28 SFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD  105 (235)
Q Consensus        28 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~  105 (235)
                      +|+.+ ....|+..++................ ++|++.+..|+.. ...+.|+.+++......................
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             eeEEe-ccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            34433 34678888887665554444333333 8999866555555 457889888886532101112223333456778


Q ss_pred             EEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC--CCCcEEEEEcCCCceeeee
Q 026679          106 IKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS--GDGTLHAWNINTRNEVACW  182 (235)
Q Consensus       106 ~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~  182 (235)
                      +++.+. ++..++-...+.|.+.++...........  .......++++|.+.+|+...  ..+.|...++.........
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~--~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC--SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC--CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence            999884 44445555678899999876544333321  223468899999666665543  2478999988543333333


Q ss_pred             cCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCCCCCC
Q 026679          183 NGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       183 ~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~~~~  221 (235)
                      ...-.....|+++|++..|..++   +.|..+++++.....+
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~  283 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  283 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence            33335678999999888777775   5588888876554433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.83  E-value=5.6e-07  Score=73.25  Aligned_cols=184  Identities=13%  Similarity=0.145  Sum_probs=117.8

Q ss_pred             eEEEeecCCCeeEEEeccc-------------------eEEEEecCcceeeeeeeccC---------Cce--EEEcCCCC
Q 026679           18 ISLCMSPVNDSFMSGSLDH-------------------SVRIWDLRVNACQGILRLRG---------RPT--VAFDQQGL   67 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~~---------~~~--~~~~~~~~   67 (235)
                      ..+++.|+...++.++.++                   .|..+|.++++.+..++...         .+.  ..+..+++
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            3578888888888887766                   39999999999888876531         111  22334665


Q ss_pred             ---EEEEEecCCeEEEEeccCCCCCCce-------eEeecC-CCcc------------------------eeEEEEccCC
Q 026679           68 ---VFAVAMEAGAIKLFDSRSYDKGPFD-------TFLVGG-DTAE------------------------VCDIKFSNDG  112 (235)
Q Consensus        68 ---~l~~~~~dg~v~i~d~~~~~~~~~~-------~~~~~~-~~~~------------------------v~~~~~~~~~  112 (235)
                         .++.++.+|.++++|..+++.....       ...... ...+                        -..++++|+.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence               6888999999999999887641000       000000 0000                        0125677766


Q ss_pred             CeEEEe------------------------------------cCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC
Q 026679          113 KSMLLT------------------------------------TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG  156 (235)
Q Consensus       113 ~~l~~~------------------------------------~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  156 (235)
                      ..+++.                                    ..+|.|..||+.+++.+-......   ......+...+
T Consensus       393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~---~~~~~~~~t~g  469 (668)
T 1kv9_A          393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT---HWNGGTLSTAG  469 (668)
T ss_dssp             TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETT
T ss_pred             CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC---CCcCceeEeCC
Confidence            554431                                    124789999999999876665432   23334555678


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeecCCCcce-eEEEeecCCC-EEEEc
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV-ACLKWAPRRA-MFVAA  204 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~l~~~  204 (235)
                      .+++.++.|+.+++||.++++.+..+....... .-+.+..+|+ +++.+
T Consensus       470 g~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~  519 (668)
T 1kv9_A          470 NLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIM  519 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEE
Confidence            889999999999999999999988876443211 2234445665 44443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.83  E-value=3.7e-06  Score=62.13  Aligned_cols=184  Identities=11%  Similarity=0.154  Sum_probs=116.9

Q ss_pred             CCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcC----CCC---EEEEEec---CCeEEEEeccCCCCCCceeEe
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ----QGL---VFAVAME---AGAIKLFDSRSYDKGPFDTFL   95 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~---~l~~~~~---dg~v~i~d~~~~~~~~~~~~~   95 (235)
                      ..+++.....+-+.+||+ +++.++.+.....+-+.+-|    .++   ++++...   ++++.+|++..... .+....
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~  117 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMT  117 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECS
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeecc
Confidence            356666677788999999 88888888654433344433    333   2333333   57899997743221 111110


Q ss_pred             -----ecCCCcceeEEEE--ccC-CC-eEEEecCCCcEEEEEcC-------CCceeeeeccCCCCCcceeeEEeCCCcEE
Q 026679           96 -----VGGDTAEVCDIKF--SND-GK-SMLLTTTNNNIYVLDAY-------GGEKRCGFSLEPSPNTNTEATFTPDGQYV  159 (235)
Q Consensus        96 -----~~~~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~~~d~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  159 (235)
                           .......+..+++  +|. +. ++++...+|.+..|++.       +.+.+..+.+.   +.+..+...+....|
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~g~L  194 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEYGRL  194 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTTTEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCCCeE
Confidence                 0011145666777  664 43 67888889999999983       33455666654   347889999988999


Q ss_pred             EEeCCCCcEEEEEcC-----CCceeeeec-CC-CcceeEEEee--cCCC-EEEEcc---cceEEeeCC
Q 026679          160 VSGSGDGTLHAWNIN-----TRNEVACWN-GN-IGVVACLKWA--PRRA-MFVAAS---SVLSFWIPN  214 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~-----~~~~~~~~~-~~-~~~v~~~~~~--~~~~-~l~~~~---~~i~iw~~~  214 (235)
                      +.+-++.-|..|+.+     +++.+..+. ++ ...+..|++.  ++++ +|++++   +.+.+|+.+
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            999998777777754     244454442 22 2468888885  4555 666665   569999986

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.82  E-value=4e-06  Score=64.62  Aligned_cols=194  Identities=13%  Similarity=0.098  Sum_probs=112.4

Q ss_pred             ceeEEEeecC--CCeeEEEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEecCC-----eEEEEeccCCC
Q 026679           16 RVISLCMSPV--NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAMEAG-----AIKLFDSRSYD   87 (235)
Q Consensus        16 ~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~   87 (235)
                      ....++|+|+  +..|+.+...+.|+.+|..++...........+ .++++++++ |+++...+     .+..++.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence            4568999984  445555544488999998777765554433323 399999999 44444321     23333333221


Q ss_pred             CCCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE-EEeCCC
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGD  165 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d  165 (235)
                      ..   ..... .......++++| ++..+++-..++.|+.+|..++.....+...........++|+|++++| ++-...
T Consensus       219 ~~---~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          219 TE---RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             CC---EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred             ec---ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence            10   01111 123456788999 6665555556788999998877652222111122223469999999855 455567


Q ss_pred             CcEEEEEcC--CCce--eeeecCC---------------CcceeEEEe---------ecCCCEEEEcc--cceEEeeCC
Q 026679          166 GTLHAWNIN--TRNE--VACWNGN---------------IGVVACLKW---------APRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       166 g~i~v~d~~--~~~~--~~~~~~~---------------~~~v~~~~~---------~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      +.|+.++..  ++..  ...+.+.               -.....+++         .+++.++++-.  +.|+.++.+
T Consensus       295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~  373 (433)
T 4hw6_A          295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE  373 (433)
T ss_dssp             TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred             CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC
Confidence            889998865  2321  1111111               123567898         66666665554  457777654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.80  E-value=1.7e-05  Score=60.19  Aligned_cols=191  Identities=10%  Similarity=0.004  Sum_probs=114.1

Q ss_pred             cceeEEEeecCCCeeE-EEeccceEEEEecCcceeeeeeecc--CCceEEEcCCCCEE-EEEecCCeEEEEeccCCCCCC
Q 026679           15 ERVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLR--GRPTVAFDQQGLVF-AVAMEAGAIKLFDSRSYDKGP   90 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~   90 (235)
                      .....++|++.+..|+ +-...+.|..+++........+...  ....+++++.+..| ++-...+.|.+.++.....  
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~--  193 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--  193 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC--
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce--
Confidence            3467789997655544 4445678988988765443333322  22338899855544 5555577888888765332  


Q ss_pred             ceeEeecCCCcceeEEEEccCCCeEEEecC-C-CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE-EeCCCCc
Q 026679           91 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N-NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGT  167 (235)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~  167 (235)
                        .............+++.|.+..|+.+.. . +.|..+++..........  ........++++|++..|+ +-...+.
T Consensus       194 --~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~--~~~~~PnGlavd~~~~~lY~aD~~~~~  269 (386)
T 3v65_B          194 --KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHV  269 (386)
T ss_dssp             --EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--SSCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred             --EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE--CCCCCeeeEEEeCCCCEEEEEECCCCE
Confidence              2222333356788999997666665543 4 689999876543322221  2223468899998666555 4455778


Q ss_pred             EEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679          168 LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      |..+|+........+.........|++.. +.++++..  +.|..++
T Consensus       270 I~~~d~dG~~~~~~~~~~~~~P~giav~~-~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          270 IERANLDGSHRKAVISQGLPHPFAITVFE-DSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEEECTTSCSCEEEECSSCSSEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCeeEEEEECCCCCceEEEEEC-CEEEEeeCCCCeEEEEE
Confidence            99999864333333333344567888843 33333332  5576666

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.79  E-value=1.7e-05  Score=59.44  Aligned_cols=190  Identities=9%  Similarity=0.025  Sum_probs=113.5

Q ss_pred             ceeEEEeecCCCeeE-EEeccceEEEEecCcceeeeeeec--cCCceEEEcCCCCE-EEEEecCCeEEEEeccCCCCCCc
Q 026679           16 RVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRL--RGRPTVAFDQQGLV-FAVAMEAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~-l~~~~~dg~v~i~d~~~~~~~~~   91 (235)
                      ....++|++.+..|+ +-...+.|..+++........+..  .....+++++.+.. +++-...+.|.+.++.....   
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---  150 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---  150 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---
Confidence            357889997655555 444567888888876544333322  22334899885544 45555678899999875432   


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEec-CC-CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE-EeCCCCcE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTT-TN-NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTL  168 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i  168 (235)
                       .............+++.|.+..|+... .. +.|..+++...... .+. .........++++|++..|+ +-...+.|
T Consensus       151 -~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~-~~~~~~PnGla~d~~~~~lY~aD~~~~~I  227 (349)
T 3v64_C          151 -KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVI  227 (349)
T ss_dssp             -EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-ESC-CSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             -EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-EEE-ECCCCCcceEEEeCCCCEEEEEECCCCEE
Confidence             222223335578899999666555544 34 78999987654322 221 12224468899998666555 44556789


Q ss_pred             EEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679          169 HAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       169 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      ..+|+........+........++++. .+.++++-.  +.|..++
T Consensus       228 ~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          228 ERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             EEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEE
Confidence            999986433332333334456788884 333333332  5566666

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.78  E-value=4.4e-06  Score=58.64  Aligned_cols=147  Identities=13%  Similarity=0.132  Sum_probs=95.0

Q ss_pred             EEEcCCCCEEEEEecC--CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEE-ecCCCcEEEEEcCCCceee
Q 026679           60 VAFDQQGLVFAVAMEA--GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TTTNNNIYVLDAYGGEKRC  136 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~  136 (235)
                      +.|++ +.++.+.+.+  ..|+.+|+.+++.  .....+..   ........+.++.|+. .-.++.+.+||..+.+.+.
T Consensus        26 L~~~~-~~LyestG~~g~S~v~~vD~~tgkv--~~~~~l~~---~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~   99 (243)
T 3mbr_X           26 LFYLR-GHLYESTGETGRSSVRKVDLETGRI--LQRAEVPP---PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA   99 (243)
T ss_dssp             EEEET-TEEEEEECCTTSCEEEEEETTTCCE--EEEEECCT---TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             EEEEC-CEEEEECCCCCCceEEEEECCCCCE--EEEEeCCC---CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence            77876 5566666665  4899999998764  11222222   2222222333444444 4568999999999999998


Q ss_pred             eeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC--C---cceeEEEeecCCCEEEEc--ccceE
Q 026679          137 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN--I---GVVACLKWAPRRAMFVAA--SSVLS  209 (235)
Q Consensus       137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~--~~~i~  209 (235)
                      .+......     ..+.++++.|+.+..++.|.++|..+.+.+..+...  .   ..+..+.|. +|+..+..  +..|.
T Consensus       100 ti~~~~~G-----wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~  173 (243)
T 3mbr_X          100 RFRYPGEG-----WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIA  173 (243)
T ss_dssp             EEECSSCC-----CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             EEeCCCCc-----eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEE
Confidence            88875432     344567777777777889999999999888777532  1   234556665 56544443  26688


Q ss_pred             EeeCCCCCC
Q 026679          210 FWIPNPSSN  218 (235)
Q Consensus       210 iw~~~~~~~  218 (235)
                      +.|.++++.
T Consensus       174 vIDp~tG~V  182 (243)
T 3mbr_X          174 RIDPASGKV  182 (243)
T ss_dssp             EECTTTCBE
T ss_pred             EEECCCCCE
Confidence            888877653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.78  E-value=9.1e-06  Score=61.72  Aligned_cols=193  Identities=8%  Similarity=-0.016  Sum_probs=114.6

Q ss_pred             eEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEE-EEecCCeEEEEeccCCCCCCceeEe
Q 026679           18 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFL   95 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~   95 (235)
                      .|.+..+ ..+|+.+ ....|+..++..............+. ++|++.+..|+ +-...+.|..+++.....    ...
T Consensus        80 ~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----~~~  153 (386)
T 3v65_B           80 SCKALGP-EPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----EEV  153 (386)
T ss_dssp             CEEECSS-CCEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE----EEE
T ss_pred             eECCccc-cceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc----EEE
Confidence            3444444 2334333 34568888887665544444333333 89997655555 445678899998876432    122


Q ss_pred             ecCCCcceeEEEEccCCCeE-EEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe-CCC-CcEEEEE
Q 026679           96 VGGDTAEVCDIKFSNDGKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG-SGD-GTLHAWN  172 (235)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d-g~i~v~d  172 (235)
                      ..........+++.+.+..| ++-...+.|.+.++..........  ........++++|.+..|+.. ... +.|..++
T Consensus       154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~--~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec--CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence            22222345678888755544 445557789988876543322222  222446889999976655544 334 7888888


Q ss_pred             cCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679          173 INTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN  218 (235)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~  218 (235)
                      +..................|+++|++..|..+.   +.|..+++++...
T Consensus       232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (386)
T 3v65_B          232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR  280 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC
T ss_pred             CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee
Confidence            754333222222334578999998777776665   5588888776443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.76  E-value=2e-06  Score=66.31  Aligned_cols=154  Identities=9%  Similarity=0.145  Sum_probs=97.6

Q ss_pred             ceeEEEeec-CCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecC-C----eEEEEeccCCCC
Q 026679           16 RVISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEA-G----AIKLFDSRSYDK   88 (235)
Q Consensus        16 ~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d-g----~v~i~d~~~~~~   88 (235)
                      ....|+++| ++..|+.+...+.|+.+|++.+...........+. ++++++++.|+++... +    .+..++... ..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ce
Confidence            457889998 45566666555889999988766554444333344 9999999966666542 2    344444332 22


Q ss_pred             CCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE-EEeCCCC
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGDG  166 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg  166 (235)
                      .......   .......++++| ++..+++-..++.|..++...+.......... ......++|+|+|++| ++-...+
T Consensus       217 ~~~~~l~---~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d~~~~  292 (430)
T 3tc9_A          217 KVITELT---KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGNYAYIVVVNQH  292 (430)
T ss_dssp             CSEEEEE---ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-SSCCEEEEECTTSSEEEEEETTTT
T ss_pred             eeeeeec---cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCCEEEEEECCCC
Confidence            1111111   123456788999 67666666678899999988765433333222 2346789999999955 4555678


Q ss_pred             cEEEEEcC
Q 026679          167 TLHAWNIN  174 (235)
Q Consensus       167 ~i~v~d~~  174 (235)
                      .|..++..
T Consensus       293 ~I~~~~~d  300 (430)
T 3tc9_A          293 YILRSDYD  300 (430)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEeCC
Confidence            89998865

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.75  E-value=7.6e-06  Score=68.06  Aligned_cols=195  Identities=10%  Similarity=0.058  Sum_probs=126.1

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec----------cCCceEEEcCCCCEEEEEecCCeEEEEec
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL----------RGRPTVAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      ...|.++...++|. |..|+.++-|..||..++........          ..+..+...++++.|.+|+.++-+..+|.
T Consensus       356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            34688888887765 55577777799999877654333211          11223566677875777888778999998


Q ss_pred             cCCCCCCceeEee---cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc----CCCCCcceeeEEeCCC
Q 026679           84 RSYDKGPFDTFLV---GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL----EPSPNTNTEATFTPDG  156 (235)
Q Consensus        84 ~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~~~i~~~~~~~~~  156 (235)
                      .+++.   .....   ......|.++...++|+. ..++. +-+.+||..+++.......    ......|.++...++|
T Consensus       435 ~~~~~---~~~~~~~~~l~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g  509 (795)
T 4a2l_A          435 NSGQV---ENFNQRNSQLVNENVYAILPDGEGNL-WLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK  509 (795)
T ss_dssp             TTCCE---EEECTTTSCCSCSCEEEEEECSSSCE-EEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC
T ss_pred             CCCcE---EEeecCCCCcCCCeeEEEEECCCCCE-EEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC
Confidence            76542   11111   012356888988888874 44555 4588999887655432211    1122568888888888


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeec-------CCCcceeEEEeecCCCEEEEcccceEEeeCCCCCC
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWN-------GNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSN  218 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~~  218 (235)
                      ++.+... . -|..||..+++.  .+.       .....|.++...++|.+.+++.+.+..|+.++...
T Consensus       510 ~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~d~~~~~~  574 (795)
T 4a2l_A          510 RLWIGGE-E-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYCFNEKDKQI  574 (795)
T ss_dssp             CEEEEES-S-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESSCEEEEETTTTEE
T ss_pred             CEEEEeC-C-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCCCceeECCCCCcE
Confidence            8666554 4 488899876654  221       12346889999999987777666788888765543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.71  E-value=9.1e-06  Score=65.05  Aligned_cols=180  Identities=14%  Similarity=0.209  Sum_probs=113.0

Q ss_pred             EEEeecCCCeeEEEec--------------------c----ceEEEEecCcceeeeeeeccC----------CceEE-Ec
Q 026679           19 SLCMSPVNDSFMSGSL--------------------D----HSVRIWDLRVNACQGILRLRG----------RPTVA-FD   63 (235)
Q Consensus        19 ~~~~~~~~~~l~s~~~--------------------d----~~i~vwd~~~~~~~~~~~~~~----------~~~~~-~~   63 (235)
                      .+++.|+..+++.+..                    |    +.|..+|.++++.+..++...          .+++. ..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~  329 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK  329 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence            4677777777766552                    2    589999999999888876421          12222 21


Q ss_pred             -CCCC---EEEEEecCCeEEEEeccCCCCCCceeEeecC----------C-Cc---------------------------
Q 026679           64 -QQGL---VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG----------D-TA---------------------------  101 (235)
Q Consensus        64 -~~~~---~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~----------~-~~---------------------------  101 (235)
                       .+|+   .++.++.+|.++++|..+++..  .......          . ..                           
T Consensus       330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l--w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~  407 (582)
T 1flg_A          330 AKDGKIVKATAHADRNGFFYVVDRSNGKLQ--NAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP  407 (582)
T ss_dssp             CSSSCEEEEEEEECTTSEEEEEETTTCCEE--EEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred             cCCCCEEEEEEEECCCceEEEEECCCCCEe--cccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence             4674   7888999999999998876631  1111100          0 00                           


Q ss_pred             -----ceeEEEEccCCCeEEEec---------------------------------CCCcEEEEEcCCCceeeeeccCCC
Q 026679          102 -----EVCDIKFSNDGKSMLLTT---------------------------------TNNNIYVLDAYGGEKRCGFSLEPS  143 (235)
Q Consensus       102 -----~v~~~~~~~~~~~l~~~~---------------------------------~d~~i~~~d~~~~~~~~~~~~~~~  143 (235)
                           .-..++++|+...+++..                                 .+|.|..||+.+++.+-.......
T Consensus       408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~  487 (582)
T 1flg_A          408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP  487 (582)
T ss_dssp             TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC
T ss_pred             CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC
Confidence                 001345666555554432                                 257899999999988766554321


Q ss_pred             CCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcce-eEEEeecCCCEEEE
Q 026679          144 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV-ACLKWAPRRAMFVA  203 (235)
Q Consensus       144 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~  203 (235)
                         ...-.....+.+++.++.||.++.||.++|+.+-.++...+.. .-+.+..+|+..++
T Consensus       488 ---~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          488 ---LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             ---CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ---CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence               2222233356678889999999999999999998887543321 22566678864433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.71  E-value=2.9e-05  Score=56.96  Aligned_cols=157  Identities=15%  Similarity=0.209  Sum_probs=104.8

Q ss_pred             cceeEEEeecCCCeeEEEe-ccceEEEEecCcceeeeeeeccCC----------ceEEE---cCCCCEEEEEec------
Q 026679           15 ERVISLCMSPVNDSFMSGS-LDHSVRIWDLRVNACQGILRLRGR----------PTVAF---DQQGLVFAVAME------   74 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~----------~~~~~---~~~~~~l~~~~~------   74 (235)
                      -.--+++|++....|..++ ..++|..||...+..... .....          ..+.+   .|+++++++...      
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            3445788988666666655 789999999875544333 22221          12888   688777776442      


Q ss_pred             -------CCeEEEEecc---CCCCCCceeEeecC-----------CCcceeEEEEccCCCeEEEecCC-CcEEEEEcCCC
Q 026679           75 -------AGAIKLFDSR---SYDKGPFDTFLVGG-----------DTAEVCDIKFSNDGKSMLLTTTN-NNIYVLDAYGG  132 (235)
Q Consensus        75 -------dg~v~i~d~~---~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~  132 (235)
                             +..+..||+.   +++.  .....+..           .......++..++|+..++++.. +.|..++....
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~--~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKP--VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCC--SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             cccccCCCCEEEEEcCCcCCCCCE--EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                   5789999998   5543  22222211           11347899999999999988888 88888886543


Q ss_pred             ceeeeeccCC----CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679          133 EKRCGFSLEP----SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT  175 (235)
Q Consensus       133 ~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  175 (235)
                       ....+....    .....+.++++|+|+.|++....|.|..+|+.+
T Consensus       170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence             332222111    112367899999999888877799999999874

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.70  E-value=1.1e-05  Score=64.52  Aligned_cols=188  Identities=14%  Similarity=0.078  Sum_probs=116.8

Q ss_pred             CeeEEEec------cceEEEEecCcceeeeeeeccCC----------------------------------------ceE
Q 026679           27 DSFMSGSL------DHSVRIWDLRVNACQGILRLRGR----------------------------------------PTV   60 (235)
Q Consensus        27 ~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~----------------------------------------~~~   60 (235)
                      ..++.++.      ++.|..+|.++++.+..+.....                                        ..+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            45555554      78999999999988876654321                                        125


Q ss_pred             EEcCCCCEEEEEecC----------------CeEEEEeccCCCCCCceeEeecCCC--------cceeEEEEccCCC---
Q 026679           61 AFDQQGLVFAVAMEA----------------GAIKLFDSRSYDKGPFDTFLVGGDT--------AEVCDIKFSNDGK---  113 (235)
Q Consensus        61 ~~~~~~~~l~~~~~d----------------g~v~i~d~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~---  113 (235)
                      ++.++...++.+..+                +.|..+|..+++.  ...+....|.        .++. +...++|+   
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~--~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~  317 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA--KWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP  317 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE--EEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE--EEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence            666766677666532                3588899988764  2222222221        2221 22234674   


Q ss_pred             eEEEecCCCcEEEEEcCCCceeeeeccCCCC-----------Ccc--------------------------eeeEEeCCC
Q 026679          114 SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-----------NTN--------------------------TEATFTPDG  156 (235)
Q Consensus       114 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------~~i--------------------------~~~~~~~~~  156 (235)
                      .++.++.+|.++++|..+++.+.........           .++                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            5677888999999999999887665443200           011                          246788887


Q ss_pred             cEEEEeC-------------------------------------CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCC
Q 026679          157 QYVVSGS-------------------------------------GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA  199 (235)
Q Consensus       157 ~~l~~~~-------------------------------------~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  199 (235)
                      .++++..                                     .+|.|..||..+++.+-++... .++........+.
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg  476 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGG  476 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTT
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCC
Confidence            7776542                                     3578999999999987766532 2333333333445


Q ss_pred             EEEEcc--cceEEeeCCCCCC
Q 026679          200 MFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       200 ~l~~~~--~~i~iw~~~~~~~  218 (235)
                      .++.++  +.++.+|.++++.
T Consensus       477 ~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          477 LVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEcCCCeEEEEECCCCCE
Confidence            555554  7899999877653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.68  E-value=4.7e-05  Score=63.33  Aligned_cols=198  Identities=14%  Similarity=0.097  Sum_probs=127.9

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec---------cCCceEEEcCCCCEEEEEecCCeEEEEecc
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL---------RGRPTVAFDQQGLVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~   84 (235)
                      ...|.++...++|.+. .|+.+ -|.+||..++........         ..+..+...++|. +..|+.++-+..++..
T Consensus       262 ~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence            3568899888877644 44445 588999877654433221         1122366666766 5667777778888876


Q ss_pred             CCCCCCceeEee-----cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccC------CCCCcceeeEEe
Q 026679           85 SYDKGPFDTFLV-----GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE------PSPNTNTEATFT  153 (235)
Q Consensus        85 ~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------~~~~~i~~~~~~  153 (235)
                      +...   .....     .-....|.++...++|+ |..|+.++-|..||..+++........      .....|.++...
T Consensus       339 ~~~~---~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d  414 (795)
T 4a2l_A          339 RNRF---KNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD  414 (795)
T ss_dssp             GGSS---EEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred             cccc---eEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence            5432   11111     11234688998888876 666888877999998776543321111      112558888888


Q ss_pred             CCCcEEEEeCCCCcEEEEEcCCCceeeeec----CCCcceeEEEeecCCCEEEEcccceEEeeCCCCCC
Q 026679          154 PDGQYVVSGSGDGTLHAWNINTRNEVACWN----GNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSN  218 (235)
Q Consensus       154 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~~  218 (235)
                      ++|+.|..|+.++-|..||..+++......    .....|.++...+++.+.+...+.+.+|+.++...
T Consensus       415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~  483 (795)
T 4a2l_A          415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSF  483 (795)
T ss_dssp             TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEE
T ss_pred             CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeE
Confidence            898856667776679999988766432221    12457899999888887776666688888876543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.68  E-value=3.8e-05  Score=56.70  Aligned_cols=195  Identities=11%  Similarity=0.017  Sum_probs=115.3

Q ss_pred             ceeEEEeecCCCee-EEEeccceEEEEecCcceeee-eeec--cCCceEEEcCCC-CEEEEEecCCeEEEEeccCCCCCC
Q 026679           16 RVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQG-ILRL--RGRPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGP   90 (235)
Q Consensus        16 ~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~-~~~~--~~~~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~   90 (235)
                      ....++|++.+..| .+-...+.|..+++....... .+..  .....+++.+.+ .++++-...+.|.++++.....  
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--  113 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--  113 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--
Confidence            45678898865444 454556788888887653222 2221  223348898754 4455555678999999875432  


Q ss_pred             ceeEeecCCCcceeEEEEccCCCeEEEec--CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE-eCCCCc
Q 026679           91 FDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS-GSGDGT  167 (235)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~  167 (235)
                        .............+++.|.+..|+.+.  ..+.|..+++..... ..+. ...-.....++++|++..|+. -+..+.
T Consensus       114 --~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~-~~~l~~Pnglavd~~~~~lY~aD~~~~~  189 (318)
T 3sov_A          114 --KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIII-NSEIYWPNGLTLDYEEQKLYWADAKLNF  189 (318)
T ss_dssp             --EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEE-CSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             --EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEE-ECCCCCccEEEEeccCCEEEEEECCCCE
Confidence              222223345678999999766666655  357899998764332 2221 112234688999996665554 456788


Q ss_pred             EEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679          168 LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS  216 (235)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~  216 (235)
                      |..+|+..................+++..++-+++-.. +.|..++..++
T Consensus       190 I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          190 IHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             EEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCC
Confidence            99999864332222232344567788764432322222 56777777444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.67  E-value=7.7e-06  Score=65.36  Aligned_cols=180  Identities=12%  Similarity=0.072  Sum_probs=113.4

Q ss_pred             EEeecCCCeeEEEecc----------------ceEEEEecCcceeeeeeeccC----------Cce-EEEcCCCC---EE
Q 026679           20 LCMSPVNDSFMSGSLD----------------HSVRIWDLRVNACQGILRLRG----------RPT-VAFDQQGL---VF   69 (235)
Q Consensus        20 ~~~~~~~~~l~s~~~d----------------~~i~vwd~~~~~~~~~~~~~~----------~~~-~~~~~~~~---~l   69 (235)
                      +++.++...++.+..+                +.|..+|.++++.+..++...          .++ .....+|+   .+
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v  319 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL  319 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEE
Confidence            5566666666655432                359999999999887776431          122 22234674   57


Q ss_pred             EEEecCCeEEEEeccCCCCCCceeEeecC-----------CCcce--------------------------eEEEEccCC
Q 026679           70 AVAMEAGAIKLFDSRSYDKGPFDTFLVGG-----------DTAEV--------------------------CDIKFSNDG  112 (235)
Q Consensus        70 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-----------~~~~v--------------------------~~~~~~~~~  112 (235)
                      +.++.+|.+.++|..+++..  ....+..           ...++                          ..++++|+.
T Consensus       320 ~~~~~~G~l~~lD~~tG~~~--w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          320 SHIDRNGILYTLNRENGNLI--VAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEE--EEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEeCCCcEEEEEECCCCCEE--eeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            78889999999999887641  1111111           00011                          235777777


Q ss_pred             CeEEEec-------------------------------------CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC
Q 026679          113 KSMLLTT-------------------------------------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus       113 ~~l~~~~-------------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      ..+++..                                     .++.|..||+.+++..-.+.....   +....+...
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~---~~~~~~~t~  474 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTK  474 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEET
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC---ccceeEEEC
Confidence            6666543                                     357899999999988776654322   223333445


Q ss_pred             CcEEEEeCCCCcEEEEEcCCCceeeeecCCCcc-eeEEEeecCCCEEEEc
Q 026679          156 GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAMFVAA  204 (235)
Q Consensus       156 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~  204 (235)
                      +..++.++.||.|+.+|.++++.+..+...... -.-+.+..+++.++..
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~  524 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEE
Confidence            667778999999999999999998887643221 1223455777765554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.63  E-value=5.1e-06  Score=67.66  Aligned_cols=187  Identities=11%  Similarity=0.059  Sum_probs=118.9

Q ss_pred             CCeeEEEeccceEEEEecCcceeeeeeeccCCc-------------eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-------------TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD   92 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~   92 (235)
                      +..++.++.++.|..+|..+++.+..+......             .+++  .+..+++++.|+.+..+|..+++.  ..
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~--~W  141 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKA--IW  141 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCE--EE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCE--ee
Confidence            456778888999999999999988777543211             1222  356788888999999999998774  11


Q ss_pred             eEeecCCC--cceeE-EEEccCCCeEEEecC------CCcEEEEEcCCCceeeeeccCCC-C------------------
Q 026679           93 TFLVGGDT--AEVCD-IKFSNDGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPS-P------------------  144 (235)
Q Consensus        93 ~~~~~~~~--~~v~~-~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~-~------------------  144 (235)
                      ........  ..+.. ..+  .+..++++..      ++.|+.+|..+++.+-.+..... +                  
T Consensus       142 ~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  219 (668)
T 1kv9_A          142 SQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG  219 (668)
T ss_dssp             EEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred             eeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence            22221110  11111 111  1334555543      58999999999998876653211 0                  


Q ss_pred             ----------CcceeeEEeCCCcEEEEeCCCC-------------------cEEEEEcCCCceeeeecC--CC-------
Q 026679          145 ----------NTNTEATFTPDGQYVVSGSGDG-------------------TLHAWNINTRNEVACWNG--NI-------  186 (235)
Q Consensus       145 ----------~~i~~~~~~~~~~~l~~~~~dg-------------------~i~v~d~~~~~~~~~~~~--~~-------  186 (235)
                                .....++++|+...++.++.++                   .|..+|.++|+.+-.++.  |.       
T Consensus       220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~  299 (668)
T 1kv9_A          220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT  299 (668)
T ss_dssp             SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence                      0112468888888888887766                   399999999998876653  21       


Q ss_pred             cceeEEEeecCCC---EEEEcc--cceEEeeCCCCCC
Q 026679          187 GVVACLKWAPRRA---MFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       187 ~~v~~~~~~~~~~---~l~~~~--~~i~iw~~~~~~~  218 (235)
                      .++....+..+|+   .++.++  |.++++|.+++++
T Consensus       300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence            2222233334665   566666  7788888877654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.62  E-value=4.4e-06  Score=68.96  Aligned_cols=138  Identities=13%  Similarity=0.132  Sum_probs=85.8

Q ss_pred             EEEc-CCCCEEEEEec-CC----eEEEEeccCC-CCCCceeEeecCCCcceeEEEEccCCCeEEEecCC-----CcEEEE
Q 026679           60 VAFD-QQGLVFAVAME-AG----AIKLFDSRSY-DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVL  127 (235)
Q Consensus        60 ~~~~-~~~~~l~~~~~-dg----~v~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~  127 (235)
                      .+|+ |||+.++.+.. +|    .|+++|+.++ +.... ..     ......++|+|||+.|+....+     ..|+++
T Consensus       179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~-----~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KV-----SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CE-----EEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cc-----cCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            8899 99998886654 33    5999999887 52111 11     1123468899999988877664     358888


Q ss_pred             EcCCCcee--eeeccCCCCCcceeeEEeCCCcEEEEeC---CCCcEEEEEcCCCc--e--eeeecCCCcceeEEEeecCC
Q 026679          128 DAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGS---GDGTLHAWNINTRN--E--VACWNGNIGVVACLKWAPRR  198 (235)
Q Consensus       128 d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~--~--~~~~~~~~~~v~~~~~~~~~  198 (235)
                      ++.+++..  ..+... .......+.|+|||++|+...   ....|+++|+.++.  .  .............+.|+..+
T Consensus       253 ~lgt~~~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEH-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             ETTSCGGGCEEEEECC-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             ECCCCchhcEEEEecC-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            88776422  222222 223456789999999987654   24468899997752  2  22223334455566655444


Q ss_pred             CEEEEc
Q 026679          199 AMFVAA  204 (235)
Q Consensus       199 ~~l~~~  204 (235)
                      .+++.+
T Consensus       332 ~l~~~t  337 (751)
T 2xe4_A          332 HLVILT  337 (751)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            444443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.61  E-value=7.2e-07  Score=72.51  Aligned_cols=199  Identities=10%  Similarity=0.072  Sum_probs=111.4

Q ss_pred             EEEeecCCCeeEEEec-cceEEEEecCcceeeeeeeccC---CceEEEcCCCCEEEEEe-cC-----CeEEEEeccCCCC
Q 026679           19 SLCMSPVNDSFMSGSL-DHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAVAM-EA-----GAIKLFDSRSYDK   88 (235)
Q Consensus        19 ~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~-~d-----g~v~i~d~~~~~~   88 (235)
                      ++++..++++++.|+. +..+.+||..+++-...-..+.   ...++..+++++++.|+ .+     ..+.+||..+...
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            4667788898888884 4589999988765333222222   22366777999999998 34     5789999876442


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEecCC---------CcEEEEEcCCCceeeeeccCCC-------CCcceeeEE
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---------NNIYVLDAYGGEKRCGFSLEPS-------PNTNTEATF  152 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~-------~~~i~~~~~  152 (235)
                      ..............-....+..++..++.++.+         ..+..||..+............       ...-.++.|
T Consensus       327 ~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~  406 (656)
T 1k3i_A          327 TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY  406 (656)
T ss_dssp             EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEE
T ss_pred             eeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEec
Confidence            100000000000000001123345555555444         3577888877654332221111       111233444


Q ss_pred             eC-CCcEEEEeCCCC-----------cEEEEEcCCCceeeee--cCCCcc-eeEEEeecCCCEEEEcc------------
Q 026679          153 TP-DGQYVVSGSGDG-----------TLHAWNINTRNEVACW--NGNIGV-VACLKWAPRRAMFVAAS------------  205 (235)
Q Consensus       153 ~~-~~~~l~~~~~dg-----------~i~v~d~~~~~~~~~~--~~~~~~-v~~~~~~~~~~~l~~~~------------  205 (235)
                      .. ++++++.|+.++           .|.+||..+.+.....  ..+... -.++...|++++++.|+            
T Consensus       407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~  486 (656)
T 1k3i_A          407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP  486 (656)
T ss_dssp             ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred             cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence            43 788888887542           5788888766544332  222222 24556678999999886            


Q ss_pred             -cceEEeeCCCCC
Q 026679          206 -SVLSFWIPNPSS  217 (235)
Q Consensus       206 -~~i~iw~~~~~~  217 (235)
                       .++.+||+.+.+
T Consensus       487 ~~~v~~ydp~t~~  499 (656)
T 1k3i_A          487 VFTPEIYVPEQDT  499 (656)
T ss_dssp             CCCCEEEEGGGTE
T ss_pred             ccceEEEcCCCCc
Confidence             237888886543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.61  E-value=5.2e-05  Score=62.75  Aligned_cols=186  Identities=10%  Similarity=0.003  Sum_probs=111.4

Q ss_pred             ccceEEEEecCcceeeeeeeccCCce-EEEcCCCCE-EEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccC
Q 026679           34 LDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLV-FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND  111 (235)
Q Consensus        34 ~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  111 (235)
                      ....|+..++................ +++++.... +++-...+.|+.+++......................|++.+.
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            34567888877655544444333333 888885554 4455556788888887532111112223323455678999887


Q ss_pred             CCeEE-EecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC-C-CCcEEEEEcCCCceeeeecCCCcc
Q 026679          112 GKSML-LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-G-DGTLHAWNINTRNEVACWNGNIGV  188 (235)
Q Consensus       112 ~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-dg~i~v~d~~~~~~~~~~~~~~~~  188 (235)
                      ++.|+ +-...+.|.+.++..........  ........|+++|.+.+|+... . .+.|.+.++........+......
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~--~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~  559 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW  559 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEe--CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCC
Confidence            75555 44557889999987554332222  1223478899999766665543 2 378999998544333333333357


Q ss_pred             eeEEEeecCCCEEEEcc---cceEEeeCCCCCCCCC
Q 026679          189 VACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       189 v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~~~~  221 (235)
                      ...|++++.+..|+.+.   ..|...++++.....+
T Consensus       560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v  595 (791)
T 3m0c_C          560 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  595 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence            88999998877777765   5588888876654443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.58  E-value=5.7e-05  Score=55.74  Aligned_cols=179  Identities=11%  Similarity=0.021  Sum_probs=107.7

Q ss_pred             cceEEEEecCccee--eeeeec-cCCceEEEcCCCC-EEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc
Q 026679           35 DHSVRIWDLRVNAC--QGILRL-RGRPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN  110 (235)
Q Consensus        35 d~~i~vwd~~~~~~--~~~~~~-~~~~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  110 (235)
                      ...|+..+++....  ...+.. .....++|++.+. ++++-...+.|..+++.......  .. ....-.....+++.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~--~~-~~~~l~~p~glavd~   88 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NV-VVSGLLSPDGLACDW   88 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC--EE-EEECCSCCCEEEEET
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE--EE-EcCCCCCccEEEEEc
Confidence            46789999876531  122221 1223488988554 44555567889999987653211  11 111223456788887


Q ss_pred             CCC-eEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC--CCCcEEEEEcCCCceeeee-cCCC
Q 026679          111 DGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS--GDGTLHAWNINTRNEVACW-NGNI  186 (235)
Q Consensus       111 ~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~-~~~~  186 (235)
                      .+. .+++-...+.|.++++..........  ........++++|.+.+|+.+.  ..+.|..+++. +.....+ ...-
T Consensus        89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~--~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l  165 (318)
T 3sov_A           89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFW--QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEI  165 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSC
T ss_pred             CCCeEEEEECCCCEEEEEECCCCcEEEEEe--CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCC
Confidence            544 44555567889999986543222221  2224468899999766665554  35788888875 3333232 2223


Q ss_pred             cceeEEEeecCCCEEEEcc---cceEEeeCCCCCCC
Q 026679          187 GVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNS  219 (235)
Q Consensus       187 ~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~~  219 (235)
                      .....|+++|++..|..++   +.|..+++++....
T Consensus       166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~  201 (318)
T 3sov_A          166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ  201 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE
Confidence            4568999999877777765   56888888765443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.57  E-value=3.5e-05  Score=61.80  Aligned_cols=180  Identities=14%  Similarity=0.070  Sum_probs=110.4

Q ss_pred             cceEEEEecCcceeeeeeeccCCc----------------------------------------eEEEcCCCCEEEEEec
Q 026679           35 DHSVRIWDLRVNACQGILRLRGRP----------------------------------------TVAFDQQGLVFAVAME   74 (235)
Q Consensus        35 d~~i~vwd~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~l~~~~~   74 (235)
                      ++.|+.+|.++++.+..+......                                        ..++.+...+++.+..
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g  260 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence            789999999999887766543211                                        2456677778887766


Q ss_pred             C----------------CeEEEEeccCCCCCCceeEeecCCC--------cceeEEEEc-cCC---CeEEEecCCCcEEE
Q 026679           75 A----------------GAIKLFDSRSYDKGPFDTFLVGGDT--------AEVCDIKFS-NDG---KSMLLTTTNNNIYV  126 (235)
Q Consensus        75 d----------------g~v~i~d~~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~---~~l~~~~~d~~i~~  126 (235)
                      +                +.|..+|..+++.  ...+....|.        .++. +... .+|   ..++.++.+|.+++
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~--~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~  337 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGEA--KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYT  337 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCE--EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEE
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCce--eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEE
Confidence            5                3788899988764  2223333221        1221 2222 467   46777889999999


Q ss_pred             EEcCCCceeeeeccCC----------CC-Cc--------------------------ceeeEEeCCCcEEEEe-------
Q 026679          127 LDAYGGEKRCGFSLEP----------SP-NT--------------------------NTEATFTPDGQYVVSG-------  162 (235)
Q Consensus       127 ~d~~~~~~~~~~~~~~----------~~-~~--------------------------i~~~~~~~~~~~l~~~-------  162 (235)
                      +|.++++.+.......          .. .+                          -..++++|+..++++.       
T Consensus       338 lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~  417 (599)
T 1w6s_A          338 LDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMD  417 (599)
T ss_dssp             EETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEE
T ss_pred             EECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEecccccee
Confidence            9999998876554321          00 00                          1246777776665442       


Q ss_pred             --------------------------C------CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cce
Q 026679          163 --------------------------S------GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL  208 (235)
Q Consensus       163 --------------------------~------~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i  208 (235)
                                                +      ..|.|..||+.+++.+-..... .+...-.....+.++..++  +.+
T Consensus       418 ~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l  496 (599)
T 1w6s_A          418 WEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYL  496 (599)
T ss_dssp             EEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEE
T ss_pred             eecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeE
Confidence                                      1      3478999999999887665421 1222111222444554454  778


Q ss_pred             EEeeCCCCCC
Q 026679          209 SFWIPNPSSN  218 (235)
Q Consensus       209 ~iw~~~~~~~  218 (235)
                      +.||.++++.
T Consensus       497 ~A~D~~tG~~  506 (599)
T 1w6s_A          497 KARDSDTGDL  506 (599)
T ss_dssp             EEEETTTCCE
T ss_pred             EEEECCCCCE
Confidence            8888877653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.57  E-value=8.1e-06  Score=62.92  Aligned_cols=148  Identities=16%  Similarity=0.180  Sum_probs=93.7

Q ss_pred             eEEEcC-CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CC----cEEEEEcCCC
Q 026679           59 TVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN----NIYVLDAYGG  132 (235)
Q Consensus        59 ~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~~~d~~~~  132 (235)
                      .++++| ++..|+++...+.|+.+|+.....     ..+.........++|+++++.|+++.. ++    .+..++. .+
T Consensus       141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-----~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-----STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             EEEEETTEEEEEEEEEBTEEEEEEETTTTEE-----EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             EEEECCCCCCeEEEEeCCCcEEEEECCCCEE-----EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            388998 456666666658899999876432     222224456789999999996666654 22    3444443 33


Q ss_pred             cee--eeeccCCCCCcceeeEEeC-CCcEEEEeCCCCcEEEEEcCCCceeeeec-CCCcceeEEEeecCCCEEEEcc---
Q 026679          133 EKR--CGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPRRAMFVAAS---  205 (235)
Q Consensus       133 ~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~---  205 (235)
                      ...  ..+...   .....++++| +|.++++-..++.|..++...+....... ........++|+|++++|..+.   
T Consensus       215 ~~~~~~~l~~~---~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          215 GFKVITELTKG---QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             TSCSEEEEEEC---SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             ceeeeeeeccC---CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence            222  112111   2256789999 77777777778899999987665422222 1224568899999999665554   


Q ss_pred             cceEEeeCCC
Q 026679          206 SVLSFWIPNP  215 (235)
Q Consensus       206 ~~i~iw~~~~  215 (235)
                      +.|..++++.
T Consensus       292 ~~I~~~~~d~  301 (430)
T 3tc9_A          292 HYILRSDYDW  301 (430)
T ss_dssp             TEEEEEEEET
T ss_pred             CEEEEEeCCc
Confidence            5688877654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.55  E-value=3e-05  Score=62.16  Aligned_cols=177  Identities=11%  Similarity=0.058  Sum_probs=109.6

Q ss_pred             EEEeecCCCeeEEEecc----------------ceEEEEecCcceeeeeeeccCC----------ceE-EEc-CCC---C
Q 026679           19 SLCMSPVNDSFMSGSLD----------------HSVRIWDLRVNACQGILRLRGR----------PTV-AFD-QQG---L   67 (235)
Q Consensus        19 ~~~~~~~~~~l~s~~~d----------------~~i~vwd~~~~~~~~~~~~~~~----------~~~-~~~-~~~---~   67 (235)
                      .+++.++...++.+..+                +.|..+|.++++.+..++....          +++ ... .+|   .
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~  324 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK  324 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence            34566666777766554                3799999999998877765421          222 222 467   5


Q ss_pred             EEEEEecCCeEEEEeccCCCCCCceeEeecC-----------CCcce--------------------------eEEEEcc
Q 026679           68 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG-----------DTAEV--------------------------CDIKFSN  110 (235)
Q Consensus        68 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-----------~~~~v--------------------------~~~~~~~  110 (235)
                      .++.++.+|.+.++|.++++...  ...+..           ...++                          ..++++|
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~lw--~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp  402 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGALVS--ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP  402 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEE--EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred             EEEEECCCcEEEEEECCCCCEee--cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence            67778899999999998876411  111100           00001                          1345666


Q ss_pred             CCCeEEEe---------------------------------c------CCCcEEEEEcCCCceeeeeccCCCCCcceeeE
Q 026679          111 DGKSMLLT---------------------------------T------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT  151 (235)
Q Consensus       111 ~~~~l~~~---------------------------------~------~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~  151 (235)
                      +...+++.                                 +      ..|.|..||+.+++.+-......   +...-.
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~---~~~~g~  479 (599)
T 1w6s_A          403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGT  479 (599)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBC
T ss_pred             CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC---CccCcc
Confidence            55544332                                 1      34789999999998876654331   122222


Q ss_pred             EeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcc-eeEEEeecCCCE
Q 026679          152 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAM  200 (235)
Q Consensus       152 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~  200 (235)
                      +...+.+++.++.||.++.||.++|+.+-.++..... ..-+.+..+|+.
T Consensus       480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             eEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            3335667888999999999999999998877643221 122455567764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.55  E-value=0.00012  Score=55.91  Aligned_cols=193  Identities=10%  Similarity=-0.010  Sum_probs=111.3

Q ss_pred             ccceeEEEeecCCCeeEEE-eccceEEEEecCcc----eeeeeeecc--CCceEEEcCC-CCEEEEEecCCeEEEEeccC
Q 026679           14 KERVISLCMSPVNDSFMSG-SLDHSVRIWDLRVN----ACQGILRLR--GRPTVAFDQQ-GLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~----~~~~~~~~~--~~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~   85 (235)
                      ...+..++|++.+..|+.+ ...+.|+.+++...    .....+...  ....+++.+. ++++++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            3467789999866555544 45678888887652    122222211  1223888884 45555555678899988875


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEecC--CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe-
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG-  162 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  162 (235)
                      ...    .............+++.|.+..|+....  .+.|...++..........  ..-.....++++|++..|+.+ 
T Consensus       191 ~~~----~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~--~~l~~P~glavd~~~~~lY~aD  264 (400)
T 3p5b_L          191 VKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVD  264 (400)
T ss_dssp             CSE----EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEE
T ss_pred             Cce----EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE--CCCCceEEEEEEeCCCEEEEEE
Confidence            432    2222233345789999997666665543  4789999986543322222  222447889999877666555 


Q ss_pred             CCCCcEEEEEcCCCceeeeecC--CCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          163 SGDGTLHAWNINTRNEVACWNG--NIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       163 ~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      ...+.|..+|+...........  ......++++..+ .++.+..  +.|..++.
T Consensus       265 ~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~-~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          265 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR  318 (400)
T ss_dssp             TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETT-EEEEEESSSCSEEEEES
T ss_pred             CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCC-EEEEecCCCCeEEEEEc
Confidence            5567899999864333222222  2234557776433 2333322  55776764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.52  E-value=4.8e-05  Score=60.92  Aligned_cols=187  Identities=13%  Similarity=0.084  Sum_probs=112.9

Q ss_pred             eeEEEe------ccceEEEEecCcceeeeeeeccCC-------------------------------------------c
Q 026679           28 SFMSGS------LDHSVRIWDLRVNACQGILRLRGR-------------------------------------------P   58 (235)
Q Consensus        28 ~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~-------------------------------------------~   58 (235)
                      .++.++      .++.|+.+|.++++.+........                                           .
T Consensus       170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~  249 (582)
T 1flg_A          170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ  249 (582)
T ss_dssp             EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCS
T ss_pred             EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccC
Confidence            566654      378999999999987765543210                                           1


Q ss_pred             eEEEcCCCCEEEEEec--------------------C----CeEEEEeccCCCCCCceeEeecCCC--------cceeEE
Q 026679           59 TVAFDQQGLVFAVAME--------------------A----GAIKLFDSRSYDKGPFDTFLVGGDT--------AEVCDI  106 (235)
Q Consensus        59 ~~~~~~~~~~l~~~~~--------------------d----g~v~i~d~~~~~~~~~~~~~~~~~~--------~~v~~~  106 (235)
                      ..+++|+..+++.+..                    |    +.|..+|..+++.  ...+....|.        .++. +
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~--~W~~q~~~~d~wd~~~~~~p~l-~  326 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV--KWFYQHTPNDAWDFSGNNELVL-F  326 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE--EEEEESSTTCCSCCCCCCCCEE-E
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE--EEEEeCCCCCcccccCCCCcEE-E
Confidence            1566677777776663                    2    5899999988774  1222222221        1221 1


Q ss_pred             EEc-cCCC---eEEEecCCCcEEEEEcCCCceeeeeccCCCC-----------C--------------------------
Q 026679          107 KFS-NDGK---SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-----------N--------------------------  145 (235)
Q Consensus       107 ~~~-~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------~--------------------------  145 (235)
                      ... .+|+   .++.++.+|.++++|..+++.+..+......           .                          
T Consensus       327 ~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P  406 (582)
T 1flg_A          327 DYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSP  406 (582)
T ss_dssp             EEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESS
T ss_pred             eeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECc
Confidence            221 4664   6788999999999999999887655443200           0                          


Q ss_pred             ------cceeeEEeCCCcEEEEeC---------------------------------CCCcEEEEEcCCCceeeeecCCC
Q 026679          146 ------TNTEATFTPDGQYVVSGS---------------------------------GDGTLHAWNINTRNEVACWNGNI  186 (235)
Q Consensus       146 ------~i~~~~~~~~~~~l~~~~---------------------------------~dg~i~v~d~~~~~~~~~~~~~~  186 (235)
                            .-..++++|+...+++..                                 .+|.|..||+.+++.+-+.... 
T Consensus       407 ~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-  485 (582)
T 1flg_A          407 PFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-  485 (582)
T ss_dssp             CTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-
T ss_pred             CCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-
Confidence                  011356777655554422                                 3578999999999987665432 


Q ss_pred             cceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          187 GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       187 ~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      .++..-.....+.+++.++  +.++.||.++++.
T Consensus       486 ~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          486 LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence            2222212222345555565  7799999877653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.47  E-value=0.00016  Score=60.04  Aligned_cols=198  Identities=8%  Similarity=0.014  Sum_probs=121.7

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee-----------ccCCceEEEcCCCCEEEEEecCCeEEEEe
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR-----------LRGRPTVAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      ...|.++...++|. |..|+.++-|..++...+.......           ...+..+...+++. |.+|+.++-+..||
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~  389 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE  389 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence            45788988888765 6667767778889876554322211           11122255555565 55667666788888


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      ..+....... .........|.++...+++. |..|+.++-+..+|..+++.............|.++...++|.+.+. 
T Consensus       390 ~~~~~~~~~~-~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-  466 (781)
T 3v9f_A          390 NGKRVAIYNK-ENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-  466 (781)
T ss_dssp             TTEEEEECC------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-
T ss_pred             CCCCeEEEcc-CCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-
Confidence            7653211110 00112335688888887776 56677767799999877664332111122356888888888875554 


Q ss_pred             CCCCcEEEEEcCCCceeeeecCC-----CcceeEEEeecCCCEEEEcc-cceEEeeCCCCC
Q 026679          163 SGDGTLHAWNINTRNEVACWNGN-----IGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSS  217 (235)
Q Consensus       163 ~~dg~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~~  217 (235)
                      +. +-|..||..+++........     ...|.++...++|.+.+... +.+..|+.++..
T Consensus       467 t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          467 TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE
T ss_pred             EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe
Confidence            44 45889998776543322211     35789999999998887765 567788876553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.46  E-value=0.00039  Score=57.64  Aligned_cols=191  Identities=10%  Similarity=-0.015  Sum_probs=110.1

Q ss_pred             cceeEEEeecCCCee-EEEeccceEEEEecCcc----eeeeeee--ccCCceEEEcCCCCEEE-EEecCCeEEEEeccCC
Q 026679           15 ERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVN----ACQGILR--LRGRPTVAFDQQGLVFA-VAMEAGAIKLFDSRSY   86 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~----~~~~~~~--~~~~~~~~~~~~~~~l~-~~~~dg~v~i~d~~~~   86 (235)
                      ..+..|+|.+.+..| ++-...+.|+.+++...    .....+.  ......+++.+.+..|+ +-...+.|.+.++...
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence            456788888855444 44455677888887642    2222222  12233499998775554 4456789999998754


Q ss_pred             CCCCceeEeecCCCcceeEEEEccCCCeEEEecC--CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe-C
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG-S  163 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~  163 (235)
                      ..    .............|++.|.+..|+.+..  .+.|...++..........  ........|++++.+..|+.+ .
T Consensus       504 ~~----~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~--~~l~~P~GLavD~~~~~LYwaD~  577 (791)
T 3m0c_C          504 KR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDS  577 (791)
T ss_dssp             SE----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC--SSCSCEEEEEEETTTTEEEEEET
T ss_pred             eE----EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe--CCCCCceEEEEecCCCeEEEEeC
Confidence            32    2222233445789999997666666543  3689999986544332222  222457889999866666554 5


Q ss_pred             CCCcEEEEEcCCCceeeeecCC--CcceeEEEeecCCCEEEEcc---cceEEeeC
Q 026679          164 GDGTLHAWNINTRNEVACWNGN--IGVVACLKWAPRRAMFVAAS---SVLSFWIP  213 (235)
Q Consensus       164 ~dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~---~~i~iw~~  213 (235)
                      ..+.|..+++........+...  .....+|++..  ..|+.+.   +.|...+.
T Consensus       578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEET
T ss_pred             CCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEEEEeC
Confidence            5678999998544333333221  22345666643  3455444   44555553

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.46  E-value=0.00016  Score=53.23  Aligned_cols=193  Identities=10%  Similarity=0.004  Sum_probs=112.0

Q ss_pred             cceeEEEeecCCCeeE-EEeccceEEEEecCc----ceeeeeeec--cCCceEEEcCCCC-EEEEEecCCeEEEEeccCC
Q 026679           15 ERVISLCMSPVNDSFM-SGSLDHSVRIWDLRV----NACQGILRL--RGRPTVAFDQQGL-VFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~----~~~~~~~~~--~~~~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~   86 (235)
                      .....++|++.++.|+ +-...+.|..+++..    ......+..  .....+++++.+. ++++-...+.|.++++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            3457899998665554 445568899999875    222222221  2234488887554 4455566789999998653


Q ss_pred             CCCCceeEeecCCCcceeEEEEccCCCeEEEecC-C-CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE-eC
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N-NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS-GS  163 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~  163 (235)
                      ..    .............+++.|.+..|+.+.. . +.|..+++... ....+.. ..-.....++++|++..|+. -.
T Consensus       110 ~~----~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~-~~~~~P~gla~d~~~~~lY~~D~  183 (316)
T 1ijq_A          110 KR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVT-ENIQWPNGITLDLLSGRLYWVDS  183 (316)
T ss_dssp             SE----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEEC-SSCSCEEEEEEETTTTEEEEEET
T ss_pred             ce----EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEE-CCCCCceEEEEeccCCEEEEEEC
Confidence            21    2222223346789999996666655544 2 68988887543 3222211 12244688999987666654 45


Q ss_pred             CCCcEEEEEcCCCceeeee-c--CCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          164 GDGTLHAWNINTRNEVACW-N--GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       164 ~dg~i~v~d~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      ..+.|..+|+.. .....+ .  ........+++.. +.++++..  +.|..++..+
T Consensus       184 ~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          184 KLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT  238 (316)
T ss_dssp             TTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred             CCCeEEEEecCC-CceEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCC
Confidence            567899999864 322232 2  1223467788853 33333332  5577777543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.46  E-value=2.9e-05  Score=63.16  Aligned_cols=192  Identities=13%  Similarity=0.127  Sum_probs=109.0

Q ss_pred             EEEeec-CCCeeEEEeccc-----------eEEEEecCcceeee--eeec-cCCc--eEEEcCCCCEEEEEec-CCeEEE
Q 026679           19 SLCMSP-VNDSFMSGSLDH-----------SVRIWDLRVNACQG--ILRL-RGRP--TVAFDQQGLVFAVAME-AGAIKL   80 (235)
Q Consensus        19 ~~~~~~-~~~~l~s~~~d~-----------~i~vwd~~~~~~~~--~~~~-~~~~--~~~~~~~~~~l~~~~~-dg~v~i   80 (235)
                      ..++.+ +++.++.|+.+.           .+.+||..+++-..  .+.. ....  ..++.++++++++|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456677 788888887543           58899998775332  2222 2222  2677889999999984 568999


Q ss_pred             EeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CC-----CcEEEEEcCCCceeee-----eccCCCCCccee
Q 026679           81 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TN-----NNIYVLDAYGGEKRCG-----FSLEPSPNTNTE  149 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~i~~~d~~~~~~~~~-----~~~~~~~~~i~~  149 (235)
                      ||..+.+.....  .+.. ...-.+++..++++.++.|+ .+     ..+.+||..+++....     ..+.....   .
T Consensus       270 yd~~t~~W~~~~--~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~---~  343 (656)
T 1k3i_A          270 YDSSSDSWIPGP--DMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK---Q  343 (656)
T ss_dssp             EEGGGTEEEECC--CCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT---T
T ss_pred             ecCcCCceeECC--CCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc---c
Confidence            998875431111  1111 11223455667899888888 34     5699999988765432     11111100   1


Q ss_pred             eEEeCCCcEEEEeCCCC---------cEEEEEcCCCceeeeecCCCc---------ceeEEEeec-CCCEEEEccc----
Q 026679          150 ATFTPDGQYVVSGSGDG---------TLHAWNINTRNEVACWNGNIG---------VVACLKWAP-RRAMFVAASS----  206 (235)
Q Consensus       150 ~~~~~~~~~l~~~~~dg---------~i~v~d~~~~~~~~~~~~~~~---------~v~~~~~~~-~~~~l~~~~~----  206 (235)
                      ..+..+++.++.|+.+|         .+..||..+.........+..         .-.++.+.. ++++++.|+.    
T Consensus       344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~  423 (656)
T 1k3i_A          344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ  423 (656)
T ss_dssp             GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred             ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence            22334555555554443         467888876654332221111         123344433 6777777761    


Q ss_pred             ---------ceEEeeCCCC
Q 026679          207 ---------VLSFWIPNPS  216 (235)
Q Consensus       207 ---------~i~iw~~~~~  216 (235)
                               .+.+||..+.
T Consensus       424 ~~~~~~~~~~v~~yd~~~~  442 (656)
T 1k3i_A          424 DSDATTNAHIITLGEPGTS  442 (656)
T ss_dssp             SSBCCCCEEEEECCSTTSC
T ss_pred             CCCcCCcceEEEcCCCCCC
Confidence                     4667776654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.46  E-value=0.0002  Score=59.47  Aligned_cols=195  Identities=11%  Similarity=0.042  Sum_probs=120.2

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee--ccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR--LRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~   89 (235)
                      ...|.++...+++. |..|+.++-+..+|..+++......  .....+  +...+++. +..|+. +-+..+|..+....
T Consensus       406 ~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~  482 (781)
T 3v9f_A          406 SNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVI  482 (781)
T ss_dssp             CSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCC
T ss_pred             CcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEE
Confidence            45688888877665 4446666678899987765433221  112223  55555665 555555 56888988765431


Q ss_pred             CceeEeecC----CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC-CCCcceeeEEeCCCcEEEEeCC
Q 026679           90 PFDTFLVGG----DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP-SPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        90 ~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                         ......    ....|.++...++|. |..++.++-+..||..+++......... ....|.++...++|.+.+... 
T Consensus       483 ---~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-  557 (781)
T 3v9f_A          483 ---HHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-  557 (781)
T ss_dssp             ---EEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-
T ss_pred             ---ecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-
Confidence               111111    135688998888887 5555654458889987665433211111 124578888888888665544 


Q ss_pred             CCcEEEEEcCCCceeeeecC----CCcceeEEEeecCCCEEEEcccceEEeeCCCCC
Q 026679          165 DGTLHAWNINTRNEVACWNG----NIGVVACLKWAPRRAMFVAASSVLSFWIPNPSS  217 (235)
Q Consensus       165 dg~i~v~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~  217 (235)
                      +|.+..||..+++.. .+..    ....|.++...++|.+.+++.+.+..++.++..
T Consensus       558 ~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~~~~~  613 (781)
T 3v9f_A          558 EGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITSKKC  613 (781)
T ss_dssp             TEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEETTTTE
T ss_pred             CCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEEcCCceEEEECCCCc
Confidence            665588888766532 2221    123678899999999888887667778776543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.45  E-value=0.00018  Score=56.05  Aligned_cols=155  Identities=12%  Similarity=0.176  Sum_probs=93.7

Q ss_pred             ceeEEEeec-CCCeeEEE-eccceEEEEecCcceeeeeeeccC-----CceEEE-------cCCCCEEEEEecCC-----
Q 026679           16 RVISLCMSP-VNDSFMSG-SLDHSVRIWDLRVNACQGILRLRG-----RPTVAF-------DQQGLVFAVAMEAG-----   76 (235)
Q Consensus        16 ~v~~~~~~~-~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~-------~~~~~~l~~~~~dg-----   76 (235)
                      ....|+|+| ++..|+.+ ...+.|++.|++.+..........     ...++|       +++++.|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            456899998 34444444 444679999988777665554332     223899       99999776666543     


Q ss_pred             --eEEEEeccC-CCCCC-c--eeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcC-------CCce--------
Q 026679           77 --AIKLFDSRS-YDKGP-F--DTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAY-------GGEK--------  134 (235)
Q Consensus        77 --~v~i~d~~~-~~~~~-~--~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~-------~~~~--------  134 (235)
                        .+.+++... +.... .  .....   -.....++++|+ +.++++-..++.|..+|+.       ++..        
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~---~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA---YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE---ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             CceEEEEecCCCCceeecccceeecc---CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence              255665333 12110 0  11111   123457788995 4445556678889999987       4543        


Q ss_pred             ---e-eeeccCCCCCcceeeEEeCCCcEE-EEeCCCCcEEEEEcC
Q 026679          135 ---R-CGFSLEPSPNTNTEATFTPDGQYV-VSGSGDGTLHAWNIN  174 (235)
Q Consensus       135 ---~-~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~v~d~~  174 (235)
                         . ..+... .......++|+|+|++| ++-+..+.|+.++..
T Consensus       297 ~g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          297 PNTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TTTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence               1 112222 22345789999999954 444667789886653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.45  E-value=0.00019  Score=53.20  Aligned_cols=189  Identities=8%  Similarity=0.003  Sum_probs=101.6

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec-c--CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-R--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~   91 (235)
                      +.+..+.+.+++..++.+ .++.|.. ..+.++.-..... .  ....+++.+++.+++++...+..+-.|-. +..  .
T Consensus       122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~t--W  196 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTA--W  196 (327)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSS--C
T ss_pred             CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCc--e
Confidence            456778877766656555 4555432 1122322222211 1  12237788888877666443333333321 111  1


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccC--CCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE--PSPNTNTEATFTPDGQYVVSGSGDGTLH  169 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~  169 (235)
                       ..........+..+.+.++++. +..+.+|.+++.+...++.-......  .....+..+.+.+++..++++. +|.| 
T Consensus       197 -~~~~~~~~~~~~~~~~~~~g~~-~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-  272 (327)
T 2xbg_A          197 -EPHNRTTSRRLHNMGFTPDGRL-WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-  272 (327)
T ss_dssp             -EEEECCSSSCEEEEEECTTSCE-EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-
T ss_pred             -eECCCCCCCccceeEECCCCCE-EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-
Confidence             1112234567888999998864 45566787777642223332222221  1123477888998888777665 5666 


Q ss_pred             EEEcCCCceeeeec---CCCcceeEEEeecCCCEEEEcc-cceEEee
Q 026679          170 AWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS-SVLSFWI  212 (235)
Q Consensus       170 v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~  212 (235)
                      .+....++.-..+.   .....+.++.|.+++..++.+. |.+.-++
T Consensus       273 ~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          273 LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence            34444454333332   2345688899987777777766 6555443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.45  E-value=0.00014  Score=56.06  Aligned_cols=196  Identities=10%  Similarity=0.143  Sum_probs=108.7

Q ss_pred             ccceeEEEeecCCCeeEEEecc---c-eEEEEecCccee-eeeee-ccCCceEEEcC-CCCEEEEEecCCeEEEEeccCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLD---H-SVRIWDLRVNAC-QGILR-LRGRPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d---~-~i~vwd~~~~~~-~~~~~-~~~~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~   86 (235)
                      ......++++++|+++++-...   . .+...+...+.. ...+. ......++++| ++.++++-..++.|+.+|..++
T Consensus       181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g  260 (433)
T 4hw6_A          181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG  260 (433)
T ss_dssp             CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred             CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence            3457889999999844443311   1 233333222211 01122 22223388999 6776666667788999998754


Q ss_pred             CCCCceeEeecCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcCC--Ccee--eeeccC-C------------CCCcce
Q 026679           87 DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYG--GEKR--CGFSLE-P------------SPNTNT  148 (235)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~--~~~~--~~~~~~-~------------~~~~i~  148 (235)
                      ...  ...........-..++|+|+++.|+.+ ...+.|..++...  +...  ..+... .            .-....
T Consensus       261 ~~~--~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~  338 (433)
T 4hw6_A          261 TLT--EEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPN  338 (433)
T ss_dssp             CEE--EEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEE
T ss_pred             eEE--EEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCc
Confidence            320  011111112223469999999855554 4578899988652  2211  111110 0            012356


Q ss_pred             eeEE---------eCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC------------------CcceeEEEee-cCCCE
Q 026679          149 EATF---------TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN------------------IGVVACLKWA-PRRAM  200 (235)
Q Consensus       149 ~~~~---------~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------------~~~v~~~~~~-~~~~~  200 (235)
                      .+++         .++|.++++-...+.|+.++. ++... ++.+.                  -.....|+++ +++.+
T Consensus       339 giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~l  416 (433)
T 4hw6_A          339 QGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCF  416 (433)
T ss_dssp             EEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEE
T ss_pred             cEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEE
Confidence            6888         778888777777888999985 55432 22211                  1236789999 56655


Q ss_pred             EEEcc--cceEEeeC
Q 026679          201 FVAAS--SVLSFWIP  213 (235)
Q Consensus       201 l~~~~--~~i~iw~~  213 (235)
                      +++-.  ..|+.+++
T Consensus       417 yVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          417 YIGDCDNHRVRKIAP  431 (433)
T ss_dssp             EEEEGGGTEEEEEEE
T ss_pred             EEEeCCCCEEEEEec
Confidence            55444  44666654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.43  E-value=4.9e-06  Score=68.04  Aligned_cols=182  Identities=9%  Similarity=-0.017  Sum_probs=104.7

Q ss_pred             cceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEe-cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCC
Q 026679           35 DHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG  112 (235)
Q Consensus        35 d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  112 (235)
                      .+.|+..++........+.... ...++|++.+..|+.+. ..+.|+.+++......................+++.+.+
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            4578888887665554443333 33489998766666554 567899998875110000011111112234568888654


Q ss_pred             CeE-EEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC--CCcEEEEEcCCCceeeee-cCCCcc
Q 026679          113 KSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG--DGTLHAWNINTRNEVACW-NGNIGV  188 (235)
Q Consensus       113 ~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~-~~~~~~  188 (235)
                      ..| ++-...+.|.++++........+.  ........++++|.+.+|+.+..  .+.|.++++.. .....+ ......
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~--~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~  541 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFR--EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQW  541 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECC--CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSS
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEe--CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCC
Confidence            444 444557889999987554332222  11233577899997666655543  26788888743 322222 222345


Q ss_pred             eeEEEeecCCCEEEEcc---cceEEeeCCCCCCC
Q 026679          189 VACLKWAPRRAMFVAAS---SVLSFWIPNPSSNS  219 (235)
Q Consensus       189 v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~~  219 (235)
                      ...|+|+|++..|..+.   +.|.++++++....
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~  575 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  575 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCCceE
Confidence            67899999876666654   56888888764433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.37  E-value=3.1e-05  Score=56.74  Aligned_cols=153  Identities=11%  Similarity=0.198  Sum_probs=101.7

Q ss_pred             ceEEEcCCCCEEEEEe-cCCeEEEEeccCCCCCCceeEeecC------CCcceeEEEE---ccCCCeEEEec--------
Q 026679           58 PTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGG------DTAEVCDIKF---SNDGKSMLLTT--------  119 (235)
Q Consensus        58 ~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~---~~~~~~l~~~~--------  119 (235)
                      ..++|++....|..++ ..+.|..||......   .......      ....+..+.|   .|+++++++..        
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~---~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH---FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCE---EEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeE---EEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            3489988666666665 789999999864321   1122211      1124578999   68877776543        


Q ss_pred             -----CCCcEEEEEcC---CCceeeeeccCC-----------CCCcceeeEEeCCCcEEEEeCCC-CcEEEEEcCCCcee
Q 026679          120 -----TNNNIYVLDAY---GGEKRCGFSLEP-----------SPNTNTEATFTPDGQYVVSGSGD-GTLHAWNINTRNEV  179 (235)
Q Consensus       120 -----~d~~i~~~d~~---~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~  179 (235)
                           .+..|..||+.   +++.+....+..           .......++..++|+..++++.. +.|..++.. ++.+
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~  171 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTV  171 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCE
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEE
Confidence                 15779999998   777665444321           11347889999999999988887 888777764 4333


Q ss_pred             eeec------CCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          180 ACWN------GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       180 ~~~~------~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      ..+.      ......+.|+++|++..|++..  +.+..+|++
T Consensus       172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            3221      1122467999999999888876  667777776

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.31  E-value=0.00031  Score=49.87  Aligned_cols=157  Identities=13%  Similarity=0.147  Sum_probs=97.1

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCccee---eeeeecc--------CCceEEEcCCCCEEEEEecCCeEEEEec
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC---QGILRLR--------GRPTVAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~--------~~~~~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      ...-.+++.+++.++++.-.++.+.++++.....   .......        ....++++|.++.|+++.......+|.+
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            3456778888887666665677888888765432   2222211        1134999999988888777666666666


Q ss_pred             cCCCCC-CceeEe-----ecCCCcceeEEEEccCC-CeEEEecCCCcEEEEEcCCCceeeeeccCCC-------CCccee
Q 026679           84 RSYDKG-PFDTFL-----VGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS-------PNTNTE  149 (235)
Q Consensus        84 ~~~~~~-~~~~~~-----~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-------~~~i~~  149 (235)
                      ...... ......     .......+..++++|.. ++++.......+..+|.. ++.+..+.+...       -.....
T Consensus       150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG  228 (255)
T 3qqz_A          150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG  228 (255)
T ss_dssp             ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred             cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence            521110 111110     01123457899999954 455556667889999964 567666666532       124678


Q ss_pred             eEEeCCCcEEEEeCCCCcEEEEEc
Q 026679          150 ATFTPDGQYVVSGSGDGTLHAWNI  173 (235)
Q Consensus       150 ~~~~~~~~~l~~~~~dg~i~v~d~  173 (235)
                      ++|.++|++.++ ++.+.+++|.-
T Consensus       229 ia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          229 VAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             eEECCCCCEEEE-cCCceEEEEEe
Confidence            999999985555 66667777654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.27  E-value=2.2e-05  Score=64.29  Aligned_cols=174  Identities=13%  Similarity=0.021  Sum_probs=100.2

Q ss_pred             eeEEEeecCCC-eeEEEeccceEEEEecCcceeeeeeec--cCCceEEEcCCCCEEEEEec-C-CeEEEEeccCCCCCCc
Q 026679           17 VISLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRL--RGRPTVAFDQQGLVFAVAME-A-GAIKLFDSRSYDKGPF   91 (235)
Q Consensus        17 v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-d-g~v~i~d~~~~~~~~~   91 (235)
                      ...|++.+.+. ++++-...+.|.+.++........+..  .....++++|.+..|+.+.. . +.|..+++.....   
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---  531 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---  531 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---
Confidence            45677775444 444445567899998765443333322  22334899996655555443 2 6777777654322   


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA  170 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  170 (235)
                       .......-.....|+|+|++..|+.+ ...+.|..+++....................+++..+ .++++....+.|..
T Consensus       532 -~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~  609 (699)
T 1n7d_A          532 -YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFS  609 (699)
T ss_dssp             -CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEE
T ss_pred             -eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEE
Confidence             11111222346789999976655554 4567899999865333222221111122455677554 45556666789999


Q ss_pred             EEcCCCceeeeecCCCcceeEEEee
Q 026679          171 WNINTRNEVACWNGNIGVVACLKWA  195 (235)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~v~~~~~~  195 (235)
                      ++..+++.+..+......+..|++.
T Consensus       610 ~d~~~G~~~~~i~~~~~~P~~i~v~  634 (699)
T 1n7d_A          610 ANRLTGSDVNLLAENLLSPEDMVLF  634 (699)
T ss_dssp             EETTTEEEEECCCTTCSSCCCCCBC
T ss_pred             EEccCCCceEEeecCCCCCcEEEEe
Confidence            9988888777765433344555544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.24  E-value=0.00057  Score=49.84  Aligned_cols=190  Identities=13%  Similarity=0.139  Sum_probs=97.0

Q ss_pred             CCCeeEEEecc-----ceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecCC-----eEEEEeccCCCCCCce
Q 026679           25 VNDSFMSGSLD-----HSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGPFD   92 (235)
Q Consensus        25 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~   92 (235)
                      ++..++.|+.+     ..+.+||..+.+-...-.....  ...+...++.+++.|+.++     .+.+||+.+...... 
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-  139 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-  139 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeec-
Confidence            45666677654     3577888876643322221111  1122223677888887653     577888776442111 


Q ss_pred             eEeecCCCcceeEEEEccCCCeEEEecCC-------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679           93 TFLVGGDTAEVCDIKFSNDGKSMLLTTTN-------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                       ..+...... .+++. -+++.++.|+.+       ..+.+||+.+.+....-........ .+++ .-++++++.|+.+
T Consensus       140 -~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~  214 (302)
T 2xn4_A          140 -APMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG-AGVG-VLNNLLYAVGGHD  214 (302)
T ss_dssp             -CCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEECCBS
T ss_pred             -CCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc-ccEE-EECCEEEEECCCC
Confidence             011111111 12222 256666666542       4589999988765543222221111 1222 2367788888764


Q ss_pred             -----CcEEEEEcCCCceeeeecCCCcce-eEEEeecCCCEEEEcc-------cceEEeeCCCCCCCCC
Q 026679          166 -----GTLHAWNINTRNEVACWNGNIGVV-ACLKWAPRRAMFVAAS-------SVLSFWIPNPSSNSTD  221 (235)
Q Consensus       166 -----g~i~v~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~~~~~  221 (235)
                           ..+.+||..+.+-...-....... ..+. .-++.+++.|+       .++.+||+++.+-..+
T Consensus       215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  282 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV  282 (302)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             CCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence                 368899987765432211111111 1222 23667777765       2488888876543333

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.22  E-value=0.00063  Score=49.55  Aligned_cols=186  Identities=12%  Similarity=0.073  Sum_probs=96.4

Q ss_pred             CCCeeEEEecc-----ceEEEEecCcce---eeeeeeccC--CceEEEcCCCCEEEEEecC-----CeEEEEeccCCCCC
Q 026679           25 VNDSFMSGSLD-----HSVRIWDLRVNA---CQGILRLRG--RPTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDKG   89 (235)
Q Consensus        25 ~~~~l~s~~~d-----~~i~vwd~~~~~---~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~   89 (235)
                      ++..++.|+.+     ..+.+||..+++   -...-..+.  ....+...++++++.|+.+     ..+.+||+.+.+..
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~  141 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS  141 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence            45667777754     358889987655   222211111  1112222367778887754     36888888765431


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecCC-----CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                      ..  ..+....... +++ .-+++.++.|+.+     ..+.+||+.+.+....-........ .++ ..-++++++.|+.
T Consensus       142 ~~--~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~-~~~~~~i~v~GG~  215 (301)
T 2vpj_A          142 ML--GDMQTAREGA-GLV-VASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSG-AGV-ALLNDHIYVVGGF  215 (301)
T ss_dssp             EE--EECSSCCBSC-EEE-EETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEE-EEETTEEEEECCB
T ss_pred             EC--CCCCCCcccc-eEE-EECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccccc-ceE-EEECCEEEEEeCC
Confidence            11  1111111111 122 2266777777654     4589999988765543222221111 112 2236777788876


Q ss_pred             C-----CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-------cceEEeeCCCC
Q 026679          165 D-----GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPS  216 (235)
Q Consensus       165 d-----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~  216 (235)
                      +     ..+.+||+.+.+-...-..........+..-++++++.|+       .++.+||+++.
T Consensus       216 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          216 DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             CSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            4     4689999987654322111111111112223667777775       34677887654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.21  E-value=0.0014  Score=53.01  Aligned_cols=195  Identities=11%  Similarity=0.016  Sum_probs=110.2

Q ss_pred             cceeEEEeecCCCeeEEEe-ccceEEEEecCccee-eeeeecc--CCceEEEcCCCCEEE-EEecCCeEEEEeccCCCCC
Q 026679           15 ERVISLCMSPVNDSFMSGS-LDHSVRIWDLRVNAC-QGILRLR--GRPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKG   89 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~-~~~~~~~--~~~~~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~   89 (235)
                      +....++|++.+..|+.+. ..+.|..++++.... ...+...  ....+++++.+..|+ +-...+.|.+.++..... 
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-  118 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-  118 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-
Confidence            4567889998666665444 457788888765432 2222221  222399999655544 445678999999876432 


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecC--CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE-eCCCC
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS-GSGDG  166 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg  166 (235)
                         .......-.....+++.|.+..|+.+..  .+.|...++..........  ..-.....+++++++..|+. -...+
T Consensus       119 ---~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~--~~~~~P~Glald~~~~~LY~aD~~~~  193 (619)
T 3s94_A          119 ---KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN--SEIYWPNGLTLDYEEQKLYWADAKLN  193 (619)
T ss_dssp             ---EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--SSCSSEEEEEEETTTTEEEEEETTTC
T ss_pred             ---EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe--CCCCCCcEEEEEccCCEEEEEeCCCC
Confidence               2222233445778999997666665543  4678777775433322221  12244688999997655554 45567


Q ss_pred             cEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCC
Q 026679          167 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS  217 (235)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~  217 (235)
                      .|..+|+..........+......+|++.++  .|..+.   +.|...+..+++
T Consensus       194 ~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          194 FIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             CEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred             eEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence            8999998644332222222233457777655  455544   556666665443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=98.20  E-value=0.00092  Score=50.75  Aligned_cols=146  Identities=13%  Similarity=0.229  Sum_probs=94.1

Q ss_pred             cCCCeeEEEeccceEEEEecCcceeeeeeecc------CCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCC-------
Q 026679           24 PVNDSFMSGSLDHSVRIWDLRVNACQGILRLR------GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP-------   90 (235)
Q Consensus        24 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-------   90 (235)
                      .+|..++.+- ++.||.-++.....-+.++..      ....+..+|+|++||..+. ..|.+..+..+....       
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence            3455555443 467888787654445555544      3444999999999998865 578888887332111       


Q ss_pred             -ce--eEeecC----CCcceeEEEEccC---CCeEEEecCCCcEEEEEcCCCceee-e-------eccCCCCCcceeeEE
Q 026679           91 -FD--TFLVGG----DTAEVCDIKFSND---GKSMLLTTTNNNIYVLDAYGGEKRC-G-------FSLEPSPNTNTEATF  152 (235)
Q Consensus        91 -~~--~~~~~~----~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~-~-------~~~~~~~~~i~~~~~  152 (235)
                       ..  .+.+..    ...+|..+.|+|-   +..|++-..|+.|++||+....... .       +........|.+++|
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence             11  222221    2467999999994   5679999999999999998632111 1       122222256889999


Q ss_pred             eCCCcEEEE--eCCCCcEEEE
Q 026679          153 TPDGQYVVS--GSGDGTLHAW  171 (235)
Q Consensus       153 ~~~~~~l~~--~~~dg~i~v~  171 (235)
                      .+++-.|..  .++.|.|+-.
T Consensus       188 g~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CTTSSCEEEEECTTSCEEEEE
T ss_pred             cCCCcEEEEEecCCCCCEEEE
Confidence            998876666  5578887653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.17  E-value=0.00084  Score=49.06  Aligned_cols=185  Identities=10%  Similarity=0.065  Sum_probs=96.4

Q ss_pred             CCCeeEEEecc----ceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecC------CeEEEEeccCCCCCCce
Q 026679           25 VNDSFMSGSLD----HSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEA------GAIKLFDSRSYDKGPFD   92 (235)
Q Consensus        25 ~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~   92 (235)
                      ++..++.|+.+    ..+.+||..+++-...-..+...  ..+..-++++++.|+.+      ..+.+||..+...... 
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-  133 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-  133 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-
Confidence            45666777654    56888898776533322222211  12223367788888765      4688888876542111 


Q ss_pred             eEeecCCCcceeEEEEccCCCeEEEecC---------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679           93 TFLVGGDTAEVCDIKFSNDGKSMLLTTT---------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                       ..+....... +++ .-+++.++.|+.         -..+.+||+.+.+....-....... -.++.. -++++++.|+
T Consensus       134 -~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~-~~~~i~v~GG  208 (306)
T 3ii7_A          134 -PSMLTQRCSH-GMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK-NHGLVF-VKDKIFAVGG  208 (306)
T ss_dssp             -CCCSSCCBSC-EEE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB-SCEEEE-ETTEEEEECC
T ss_pred             -CCCcCCccee-EEE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh-cceEEE-ECCEEEEEeC
Confidence             0111111111 122 225666666653         3458999998876544322222111 112222 2677778877


Q ss_pred             CC-----CcEEEEEcCCCceeee--ecCCCcceeEEEeecCCCEEEEcc-------cceEEeeCCCCC
Q 026679          164 GD-----GTLHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS  217 (235)
Q Consensus       164 ~d-----g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~  217 (235)
                      .+     ..+.+||..+.+-...  +.........+.+  ++.+++.|+       .++.+||+++.+
T Consensus       209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            54     3588999877643322  2211111222222  566666665       447888887643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.15  E-value=0.00089  Score=49.61  Aligned_cols=176  Identities=11%  Similarity=0.160  Sum_probs=104.2

Q ss_pred             hhhhhhhhcccccceeEEEeecC----CC---eeEEEe-c--cceEEEEecC--cceeeeeeec---------cCCceEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPV----ND---SFMSGS-L--DHSVRIWDLR--VNACQGILRL---------RGRPTVA   61 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~----~~---~l~s~~-~--d~~i~vwd~~--~~~~~~~~~~---------~~~~~~~   61 (235)
                      +|+.++.+..  +.++.+..-|+    |+   ++++.. .  +++|.+|++.  ++. +..+..         ....-++
T Consensus        58 ~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlc  134 (355)
T 3amr_A           58 DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFT  134 (355)
T ss_dssp             TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEE
T ss_pred             CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEE
Confidence            4555665543  45666666552    22   223333 3  5789999773  333 333311         1111266


Q ss_pred             E--cCC-CC-EEEEEecCCeEEEEeccCCCCC---CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcC----
Q 026679           62 F--DQQ-GL-VFAVAMEAGAIKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY----  130 (235)
Q Consensus        62 ~--~~~-~~-~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~----  130 (235)
                      +  +|. +. ++++...+|.+..|++......   ......+ ...+.+..+...+....|+.+-++..|..|+..    
T Consensus       135 ly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f-~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~  213 (355)
T 3amr_A          135 LYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF-KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG  213 (355)
T ss_dssp             EEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC
T ss_pred             EEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe-cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCC
Confidence            6  664 44 6778888999999998542211   1111222 223578888899888889999998888888865    


Q ss_pred             -CCceeeeeccCCCCCcceeeEEe--CCCc-EEEEeC-CCCcEEEEEcC-CCceeeee
Q 026679          131 -GGEKRCGFSLEPSPNTNTEATFT--PDGQ-YVVSGS-GDGTLHAWNIN-TRNEVACW  182 (235)
Q Consensus       131 -~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~l~~~~-~dg~i~v~d~~-~~~~~~~~  182 (235)
                       +++.+.......-...+..|++-  ++++ +|++++ .+..+.+||.. +.+.+..+
T Consensus       214 ~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          214 SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence             23444333222222347778884  5555 565555 57789999996 56666665

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.12  E-value=0.00082  Score=49.22  Aligned_cols=186  Identities=8%  Similarity=0.020  Sum_probs=95.1

Q ss_pred             CCCeeEEEec----c-----ceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecC-----CeEEEEeccCCCC
Q 026679           25 VNDSFMSGSL----D-----HSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDK   88 (235)
Q Consensus        25 ~~~~l~s~~~----d-----~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~   88 (235)
                      ++..++.|+.    +     ..+.+||..+.+-...-......  ..+..-++++++.|+.+     ..+.+||+.+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  149 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW  149 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence            4566666665    2     35778888766432222111111  12222367777777643     4678888876542


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEecCC-----CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                      ....  .+.........+.+  ++..++.|+.+     ..+.+||+.+.+....-........ .+++. -++++++.|+
T Consensus       150 ~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG  223 (308)
T 1zgk_A          150 HLVA--PMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG-AGVCV-LHNCIYAAGG  223 (308)
T ss_dssp             EECC--CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECC
T ss_pred             eECC--CCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc-ceEEE-ECCEEEEEeC
Confidence            1111  11111111122222  56667777654     4589999988765443222221111 12222 2677778887


Q ss_pred             CC-----CcEEEEEcCCCceeeeecCCCcc-eeEEEeecCCCEEEEcc-------cceEEeeCCCCC
Q 026679          164 GD-----GTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAMFVAAS-------SVLSFWIPNPSS  217 (235)
Q Consensus       164 ~d-----g~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~  217 (235)
                      .+     ..+.+||+.+.+-...-...... -.++.. -++++++.|+       .++.+||+++.+
T Consensus       224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            64     45899998776543221111111 112222 2567777765       347788887653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.09  E-value=0.0025  Score=51.60  Aligned_cols=178  Identities=12%  Similarity=0.045  Sum_probs=110.5

Q ss_pred             ccceEEEEecCcceeeeeeeccC---CceEEEcCCCCEEEEE-ecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEc
Q 026679           34 LDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS  109 (235)
Q Consensus        34 ~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  109 (235)
                      ....|+..+++.......+....   ...++|++.+..++.+ ..++.|..+++.....    .............+++.
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~----~~v~~~g~~~P~GlAvD   88 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL----EHVVEFGLDYPEGMAVD   88 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSCCCEEEEE
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc----EEEEeCCCCCcceEEEE
Confidence            45679999998665443333322   2238999866555544 5678899988875432    22222222356788888


Q ss_pred             cCCCeEE-EecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeC--CCCcEEEEEcCCCceeeeecCCC
Q 026679          110 NDGKSML-LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS--GDGTLHAWNINTRNEVACWNGNI  186 (235)
Q Consensus       110 ~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~  186 (235)
                      +.+..|+ +-...+.|.+.++..........  ..-.....++++|...+|+...  ..+.|...++.... ...+...-
T Consensus        89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~--~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~  165 (628)
T 4a0p_A           89 WLGKNLYWADTGTNRIEVSKLDGQHRQVLVW--KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNV  165 (628)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSTTCEEEEC--SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSC
T ss_pred             eCCCEEEEEECCCCEEEEEecCCCcEEEEEe--CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCC
Confidence            7655554 44557889999986543322221  2223468899999655555443  35678888875433 33332344


Q ss_pred             cceeEEEeecCCCEEEEcc---cceEEeeCCCCCC
Q 026679          187 GVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN  218 (235)
Q Consensus       187 ~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~~  218 (235)
                      .....|++++++..|..+.   +.|...++++...
T Consensus       166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~  200 (628)
T 4a0p_A          166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR  200 (628)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence            5678999999888777775   5588888876543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.06  E-value=0.0013  Score=49.06  Aligned_cols=153  Identities=10%  Similarity=0.096  Sum_probs=89.0

Q ss_pred             eEEEcCCCCEEEEE------------ecCCeEEEEeccCCCCCCceeEeecC-----CCcceeEEEEcc--CCC-eEEEe
Q 026679           59 TVAFDQQGLVFAVA------------MEAGAIKLFDSRSYDKGPFDTFLVGG-----DTAEVCDIKFSN--DGK-SMLLT  118 (235)
Q Consensus        59 ~~~~~~~~~~l~~~------------~~dg~v~i~d~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~l~~~  118 (235)
                      -+++.|+|..++++            ..+|.|.++|..+..... ......+     .......+.+.+  ++. +|+++
T Consensus        54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv  132 (355)
T 3sre_A           54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  132 (355)
T ss_dssp             EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence            36677877655555            268999999987543221 2222222     223566777765  343 34444


Q ss_pred             -cC--CCcEEEEEcCCC--ceeeeeccC-CCCCcceeeEEeCCCcEEEEeC-----------------CCCcEEEEEcCC
Q 026679          119 -TT--NNNIYVLDAYGG--EKRCGFSLE-PSPNTNTEATFTPDGQYVVSGS-----------------GDGTLHAWNINT  175 (235)
Q Consensus       119 -~~--d~~i~~~d~~~~--~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~v~d~~~  175 (235)
                       ..  +.+|.+|++...  .....-... ..-...+.+.+.++|++.++..                 ..|.|+.+|.  
T Consensus       133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--  210 (355)
T 3sre_A          133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--  210 (355)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--
T ss_pred             ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--
Confidence             22  456777776543  222211222 1224578899999999887754                 1245555554  


Q ss_pred             CceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          176 RNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                      ++ +..+...-...+.++|+||++.|..+.   +.|..|+++.
T Consensus       211 ~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          211 ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            33 222222234568999999998888775   6688888763

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.06  E-value=0.0029  Score=51.18  Aligned_cols=192  Identities=9%  Similarity=-0.013  Sum_probs=117.3

Q ss_pred             cceeEEEeecCCCeeE-EEeccceEEEEecCcceeeeeeecc--CCceEEEcCCCCEE-EEEecCCeEEEEeccCCCCCC
Q 026679           15 ERVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLR--GRPTVAFDQQGLVF-AVAMEAGAIKLFDSRSYDKGP   90 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~   90 (235)
                      .....++|++.+..|+ +-..++.|+.+++........+...  ....+++++.+..| ++-...+.|.+.++.....  
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--  114 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--  114 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--
Confidence            3567899998765555 4455788988888654433333322  23348998865555 4444578899999875432  


Q ss_pred             ceeEeecCCCcceeEEEEccCCCeEEEec--CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe-CCCCc
Q 026679           91 FDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG-SGDGT  167 (235)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~  167 (235)
                        .......-.....+++.|....|+.+.  ..+.|...++..........   .-.....++++++++.|+.+ ...+.
T Consensus       115 --~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~---~~~~P~GlalD~~~~~LY~aD~~~~~  189 (628)
T 4a0p_A          115 --QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYWTDLDTNL  189 (628)
T ss_dssp             --EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTE
T ss_pred             --EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC---CCCCcceEEEccccCEEEEEECCCCE
Confidence              222223335578999999655566554  25688888876544333222   22457889999976666554 55778


Q ss_pred             EEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCC
Q 026679          168 LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS  216 (235)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~  216 (235)
                      |..+|+..... ..+........++++..+  .|..++   +.|...+..++
T Consensus       190 I~~~d~dG~~~-~v~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          190 IESSNMLGLNR-EVIADDLPHPFGLTQYQD--YIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             EEEEETTSCSC-EEEEECCSCEEEEEEETT--EEEEEETTTTEEEEEETTTC
T ss_pred             EEEEcCCCCce-EEeeccCCCceEEEEECC--EEEEecCCCCEEEEEECCCC
Confidence            99999865433 333333344567887653  344433   55666665443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.05  E-value=0.0018  Score=48.35  Aligned_cols=183  Identities=14%  Similarity=0.143  Sum_probs=104.8

Q ss_pred             eeEEEeecCCCeeEEEe------------ccceEEEEecCcce-eeeeeeccC--------Cce-EEEcC--CCC-EEEE
Q 026679           17 VISLCMSPVNDSFMSGS------------LDHSVRIWDLRVNA-CQGILRLRG--------RPT-VAFDQ--QGL-VFAV   71 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~------------~d~~i~vwd~~~~~-~~~~~~~~~--------~~~-~~~~~--~~~-~l~~   71 (235)
                      .-.+...|+|..+++++            .+|.|.++|.++.. ....+...+        .+- +.+.+  ++. +|++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            34566777765555542            68999999987421 112222111        111 55544  453 3444


Q ss_pred             Ee-c--CCeEEEEeccCCCCCCceeEeecC-CCcceeEEEEccCCCeEEEec-----------------CCCcEEEEEcC
Q 026679           72 AM-E--AGAIKLFDSRSYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTT-----------------TNNNIYVLDAY  130 (235)
Q Consensus        72 ~~-~--dg~v~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~~~d~~  130 (235)
                      +. .  +..+.+|++..............+ .-...+.+.+.++|...++..                 ..|.|+.+|..
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~  211 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  211 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence            43 2  467888887764331111222222 224578999999998666643                 12556666653


Q ss_pred             CCceeeeeccCCCCCcceeeEEeCCCcEEEEe-CCCCcEEEEEcCC-Cce--eeeecCCCcceeEEEeec-CCCEEEEcc
Q 026679          131 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG-SGDGTLHAWNINT-RNE--VACWNGNIGVVACLKWAP-RRAMFVAAS  205 (235)
Q Consensus       131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~  205 (235)
                        +......   .-...+.++|+||++.|+.+ +..+.|+.|++.. ++.  ...+ ...+..-.+++.+ +|++.+++.
T Consensus       212 --~~~~~~~---~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          212 --DVRVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             --CCEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred             --eEEEeec---CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence              2221111   11336789999999887665 4578899999863 322  1233 2346778899999 599888664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.04  E-value=0.0016  Score=47.44  Aligned_cols=189  Identities=7%  Similarity=0.015  Sum_probs=97.0

Q ss_pred             CCCeeEEEe-cc-----ceEEEEecCcceeeeeeeccC--CceEEEcCCCCEEEEEecC-----CeEEEEeccCCCCCCc
Q 026679           25 VNDSFMSGS-LD-----HSVRIWDLRVNACQGILRLRG--RPTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDKGPF   91 (235)
Q Consensus        25 ~~~~l~s~~-~d-----~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~   91 (235)
                      ++..++.|+ .+     ..+.+||..+++-...-..+.  ....+...++.+++.|+.+     ..+.+||+.+......
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            345666666 32     368889987765332211111  1112333467788888765     4688999887651001


Q ss_pred             eeE-eecCCCcceeEEEEccCCCeEEEecCC-----CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679           92 DTF-LVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus        92 ~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                      ... .+.........+.  .++..++.|+.+     ..+.+||+.+.+....-........ .+++ ..++++++.|+.+
T Consensus        94 ~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~  169 (301)
T 2vpj_A           94 YSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLV-VASGVIYCLGGYD  169 (301)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEE-EETTEEEEECCBC
T ss_pred             EECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEE-EECCEEEEECCCC
Confidence            111 1111111111222  256667777643     3689999988765543332222111 1222 2367777887754


Q ss_pred             -----CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-------cceEEeeCCCCC
Q 026679          166 -----GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS  217 (235)
Q Consensus       166 -----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~  217 (235)
                           ..+.+||..+.+-...-..........+..-++.+++.|+       .++.+||+++..
T Consensus       170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence                 4588999877654322111111111111222566777765       347888887653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=0.0029  Score=49.42  Aligned_cols=202  Identities=13%  Similarity=0.100  Sum_probs=113.5

Q ss_pred             ceeEEEe-------ecCCCeeEEEeccc-------eEEEEecCc-ceee-----eeee-ccCCceEEEcC-CCCEEEEEe
Q 026679           16 RVISLCM-------SPVNDSFMSGSLDH-------SVRIWDLRV-NACQ-----GILR-LRGRPTVAFDQ-QGLVFAVAM   73 (235)
Q Consensus        16 ~v~~~~~-------~~~~~~l~s~~~d~-------~i~vwd~~~-~~~~-----~~~~-~~~~~~~~~~~-~~~~l~~~~   73 (235)
                      ....++|       +++++.|+.+...+       .|.+.+... +...     ..+. ......++++| ++.++++-.
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~  266 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSY  266 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEET
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEEC
Confidence            5788999       99998666655443       255665333 2221     1222 22233488999 455566666


Q ss_pred             cCCeEEEEecc-------CCCC-CC--------ceeEeecCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcC--CCce
Q 026679           74 EAGAIKLFDSR-------SYDK-GP--------FDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAY--GGEK  134 (235)
Q Consensus        74 ~dg~v~i~d~~-------~~~~-~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~--~~~~  134 (235)
                      .++.|..+|+.       ++.. .+        ...............++|+|+|+.|+.+ .....|+.++..  .+..
T Consensus       267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~  346 (496)
T 3kya_A          267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEF  346 (496)
T ss_dssp             TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCccee
Confidence            78899999997       4442 00        0111112223445789999999964444 567789886653  3321


Q ss_pred             e--eeeccC----CC---------CCcce-eeEEe-------CCCcEEEEeCCCCcEEEEEcCCCceeeeecCC------
Q 026679          135 R--CGFSLE----PS---------PNTNT-EATFT-------PDGQYVVSGSGDGTLHAWNINTRNEVACWNGN------  185 (235)
Q Consensus       135 ~--~~~~~~----~~---------~~~i~-~~~~~-------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------  185 (235)
                      .  ..+-..    ..         -.... .++..       +++.++++-...+.|+.++ .++. +.++.+.      
T Consensus       347 ~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~  424 (496)
T 3kya_A          347 ITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSL  424 (496)
T ss_dssp             CCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHH
T ss_pred             cccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccc
Confidence            0  111110    00         01223 34444       5667777777788899998 4553 3333211      


Q ss_pred             ------------------CcceeEEEeecC-CCEEEEcc--cceEEeeCCCCCCC
Q 026679          186 ------------------IGVVACLKWAPR-RAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       186 ------------------~~~v~~~~~~~~-~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                                        -.....|+++++ +.++++-.  ..|+.++++.....
T Consensus       425 ~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          425 ADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             HHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             cCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence                              124678999997 55555444  45888887665433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.89  E-value=0.0032  Score=45.91  Aligned_cols=184  Identities=8%  Similarity=-0.014  Sum_probs=95.3

Q ss_pred             CeeEEEec--cceEEEEecCcceeeeeeeccCC--ceEEEcCCCCEEEEEecC----CeEEEEeccCCCCCCceeEeecC
Q 026679           27 DSFMSGSL--DHSVRIWDLRVNACQGILRLRGR--PTVAFDQQGLVFAVAMEA----GAIKLFDSRSYDKGPFDTFLVGG   98 (235)
Q Consensus        27 ~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~   98 (235)
                      .+++.|+.  ...+.+||..+++-...-.....  ...+...++.+++.|+.+    ..+.+||+.+.+....  ..+..
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~--~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSK--LGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEE--ECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEEC--CCCCc
Confidence            34555554  35688899887653322211111  112223467788888754    6788888877543111  11111


Q ss_pred             CCcceeEEEEccCCCeEEEecCC------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC--------
Q 026679           99 DTAEVCDIKFSNDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG--------  164 (235)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------  164 (235)
                      .......+  .-+++.++.|+.+      ..+.+||..+.+....-....... -.+++ .-++++++.|+.        
T Consensus        91 ~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A           91 PRDSLAAC--AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC-SHGMV-EANGLIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             CCBSCEEE--EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB-SCEEE-EETTEEEEECCEESCTTTCE
T ss_pred             cccceeEE--EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc-eeEEE-EECCEEEEECCCCCCCCccc
Confidence            11111122  2266677777754      459999998876544322222111 11222 236677777764        


Q ss_pred             -CCcEEEEEcCCCceeeeecCCCcc-eeEEEeecCCCEEEEcc-------cceEEeeCCCCC
Q 026679          165 -DGTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAMFVAAS-------SVLSFWIPNPSS  217 (235)
Q Consensus       165 -dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~  217 (235)
                       -..+.+||..+.+-...-...... -.++... ++++++.|+       .++.+||+.+.+
T Consensus       167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence             345889998776533221111111 1122222 666777765       347888887653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.86  E-value=0.0036  Score=45.59  Aligned_cols=184  Identities=13%  Similarity=0.113  Sum_probs=93.5

Q ss_pred             CCeeEEEecc----ceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecC-----CeEEEEeccCCCCCCceeE
Q 026679           26 NDSFMSGSLD----HSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDKGPFDTF   94 (235)
Q Consensus        26 ~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~   94 (235)
                      +..++.|+.+    ..+.+||+.+.+-...-..+...  ..+...++.+++.|+.+     ..+.+||..+.+.....  
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA--   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC--
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCC--
Confidence            3455666643    35788898776533221111111  12222367778887754     35788888765421110  


Q ss_pred             eecCCCcceeEEEEccCCCeEEEecCCC-----cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC----
Q 026679           95 LVGGDTAEVCDIKFSNDGKSMLLTTTNN-----NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD----  165 (235)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----  165 (235)
                      .+.........+.  -++..++.|+.++     .+.+||+.+.+....-....... -.+++. -+++.++.|+.+    
T Consensus        94 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~  169 (302)
T 2xn4_A           94 NMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRS-SVGVGV-VGGLLYAVGGYDVASR  169 (302)
T ss_dssp             CCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCB-SCEEEE-ETTEEEEECCEETTTT
T ss_pred             CCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCccc-CceEEE-ECCEEEEEeCCCCCCC
Confidence            1111111111222  2566777776543     58889988876554322222111 112222 366777777643    


Q ss_pred             ---CcEEEEEcCCCceeee--ecCCCcceeEEEeecCCCEEEEcc-------cceEEeeCCCCC
Q 026679          166 ---GTLHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS  217 (235)
Q Consensus       166 ---g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~  217 (235)
                         ..+.+||..+.+-...  +...... .++.. -++.+++.|+       .++.+||+++.+
T Consensus       170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          170 QCLSTVECYNATTNEWTYIAEMSTRRSG-AGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             ccccEEEEEeCCCCcEEECCCCcccccc-ccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence               3588999877654322  2111111 12222 2567777765       357888887643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.84  E-value=0.0023  Score=47.77  Aligned_cols=191  Identities=7%  Similarity=0.002  Sum_probs=92.3

Q ss_pred             CCCeeEEEec-c---------ceEEEEecCcceeee--eee-ccCCceEEEcCCCCEEEEEecC----------------
Q 026679           25 VNDSFMSGSL-D---------HSVRIWDLRVNACQG--ILR-LRGRPTVAFDQQGLVFAVAMEA----------------   75 (235)
Q Consensus        25 ~~~~l~s~~~-d---------~~i~vwd~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~~~d----------------   75 (235)
                      ++.+++.|+. +         ..+.+||..+.+-..  ... .......+...++++++.|+.+                
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  144 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGK  144 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCC
Confidence            4566666765 2         358888887764222  222 1111122233678888888754                


Q ss_pred             -----------------------CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC------CCcEEE
Q 026679           76 -----------------------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------NNNIYV  126 (235)
Q Consensus        76 -----------------------g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~  126 (235)
                                             ..+.+||+.+......  ..+......-.+++. -+++.++.|+.      ...+..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~  221 (357)
T 2uvk_A          145 DSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA--GESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFE  221 (357)
T ss_dssp             CHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEE--EECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEE
T ss_pred             cccchhhhhhhhccccccccCCcccEEEEeCCCCcEEEC--CCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEE
Confidence                                   4788899877543111  111111111022222 25666666654      345788


Q ss_pred             EEc--CCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC----------------------CcEEEEEcCCCcee--e
Q 026679          127 LDA--YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD----------------------GTLHAWNINTRNEV--A  180 (235)
Q Consensus       127 ~d~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------------------g~i~v~d~~~~~~~--~  180 (235)
                      ||+  .+.+....-............+...++++++.|+.+                      ..+.+||+.+.+-.  .
T Consensus       222 ~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~  301 (357)
T 2uvk_A          222 LDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG  301 (357)
T ss_dssp             EECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE
T ss_pred             EEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCC
Confidence            887  544433322221111111222333467777888732                      24778998765432  2


Q ss_pred             eecCCCcceeEEEeecCCCEEEEcc--------cceEEeeCCCCCCCC
Q 026679          181 CWNGNIGVVACLKWAPRRAMFVAAS--------SVLSFWIPNPSSNST  220 (235)
Q Consensus       181 ~~~~~~~~v~~~~~~~~~~~l~~~~--------~~i~iw~~~~~~~~~  220 (235)
                      .+......  ..+..-++++++.|+        .++.++++++++...
T Consensus       302 ~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          302 ELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             ECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             CCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence            22221111  222334677777776        235566777665543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.82  E-value=0.0031  Score=43.47  Aligned_cols=179  Identities=10%  Similarity=0.032  Sum_probs=96.4

Q ss_pred             CCeeEEEeccceEEEEecCcce------eeeeeec---cCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce--eE
Q 026679           26 NDSFMSGSLDHSVRIWDLRVNA------CQGILRL---RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD--TF   94 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~~------~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~--~~   94 (235)
                      ...|+....| +++.=....+.      ....+-.   .....++|+|++.+.++  .+|.+.-.+..+.......  ..
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            4556677777 66554433322      1112211   33456999999997777  7787766665442221100  01


Q ss_pred             eecC-CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee-----eccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679           95 LVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG-----FSLEPSPNTNTEATFTPDGQYVVSGSGDGTL  168 (235)
Q Consensus        95 ~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  168 (235)
                      .+.. --.....+.|.|+|.+.++  .||.|+-++..+.....-     ......=..+..+.|.|+|.+.++.  |+.+
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            1100 0111467889999986665  669998887643221100     0001111347889999999988777  7765


Q ss_pred             EEEEcCCCce------eeee-cCCCcceeEEEeecCCCEEEEcccceEEeeC
Q 026679          169 HAWNINTRNE------VACW-NGNIGVVACLKWAPRRAMFVAASSVLSFWIP  213 (235)
Q Consensus       169 ~v~d~~~~~~------~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~  213 (235)
                      +-....+...      ...+ ...-...+-+.|.|++.+.++..+  ++|..
T Consensus       157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~~g--~~Y~~  206 (236)
T 1tl2_A          157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQGG--KFYED  206 (236)
T ss_dssp             EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEETT--EEEEE
T ss_pred             EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEeCC--eEEec
Confidence            4333322211      1111 122234555779999988877744  55544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.80  E-value=0.01  Score=49.11  Aligned_cols=192  Identities=12%  Similarity=0.062  Sum_probs=110.0

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCCCCce
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD   92 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~   92 (235)
                      ..|.++.-..++ .|..|+.+| +..||..+.+...........+  +.. .++ .+..++.+ -+..+|..+...   .
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~---~  134 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL---T  134 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE---E
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE---E
Confidence            468887776655 566666655 7889987765432111111112  322 344 56666665 577888765432   1


Q ss_pred             eEe---ecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC----CCCcceeeEEeCCCcEEEEeCCC
Q 026679           93 TFL---VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP----SPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus        93 ~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                      ...   .......|.++...+++... .++.+ -+..++..+++... +....    ....|.++...+++..|..|+. 
T Consensus       135 ~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-  210 (758)
T 3ott_A          135 SFDTRRNGLPNNTIYSIIRTKDNQIY-VGTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-  210 (758)
T ss_dssp             EECHHHHCCSCSCEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred             EeccCCCCcCCCeEEEEEEcCCCCEE-EEeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence            110   01123457888777777644 45544 48888877665432 22211    1124777877777765555554 


Q ss_pred             CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcccceEEeeCCCCCC
Q 026679          166 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSN  218 (235)
Q Consensus       166 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~~  218 (235)
                      +-+..+|..+++...........|.++...+++.+.+...+-+.+++.+....
T Consensus       211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~  263 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPL  263 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETTEEEEECCTTSCC
T ss_pred             CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCCceeEEecCCCcE
Confidence            35888898765432211112346888888888888776665677887765443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.80  E-value=0.0048  Score=45.09  Aligned_cols=185  Identities=9%  Similarity=0.031  Sum_probs=95.1

Q ss_pred             CCCeeEEEecc----ceEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEec----C-----CeEEEEeccCCCCC
Q 026679           25 VNDSFMSGSLD----HSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAME----A-----GAIKLFDSRSYDKG   89 (235)
Q Consensus        25 ~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~----d-----g~v~i~d~~~~~~~   89 (235)
                      ++..++.|+.+    ..+.+||..+++-...-..+...  ..+...++.+++.|+.    +     ..+.+||+.+.+..
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            45667777642    36888998776533221111111  1222336777777775    2     46788888765421


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecCC-----CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                      ...  .+.........+.+  +++.++.|+.+     ..+.+||..+.+....-......... +++. -++++++.|+.
T Consensus       104 ~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~  177 (308)
T 1zgk_A          104 PCA--PMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAV-LNRLLYAVGGF  177 (308)
T ss_dssp             ECC--CCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCB
T ss_pred             ECC--CCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEE-ECCEEEEEeCC
Confidence            111  11111111122222  56667776643     46889999887654432222221111 2222 26777777775


Q ss_pred             C-----CcEEEEEcCCCceeee--ecCCCcceeEEEeecCCCEEEEcc-------cceEEeeCCCCC
Q 026679          165 D-----GTLHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS  217 (235)
Q Consensus       165 d-----g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~  217 (235)
                      +     ..+.+||..+.+-...  +...... .++... ++.+++.|+       .++.+||+++.+
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSG-AGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCcccc-ceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            4     4588999876653322  1111111 122222 666777765       348888887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.78  E-value=0.0053  Score=45.02  Aligned_cols=149  Identities=15%  Similarity=0.122  Sum_probs=77.4

Q ss_pred             cCCCeeEEEecc-----------ceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecC--------CeEEEEe
Q 026679           24 PVNDSFMSGSLD-----------HSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEA--------GAIKLFD   82 (235)
Q Consensus        24 ~~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d--------g~v~i~d   82 (235)
                      .++..++.|+..           ..+.+||..+++-...-..+....  .+..-++.+++.|+.+        ..+.+||
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d  123 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYD  123 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEEC
Confidence            456777777741           127788887765322211111111  1222266777777742        4588888


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCC
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG  156 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  156 (235)
                      ..+.+.....  .+...... .++ ...+++.++.|+.      -..+.+||..+.+....-....... -.+++ .-++
T Consensus       124 ~~~~~W~~~~--~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~-~~~~  197 (315)
T 4asc_A          124 RLSFKWGESD--PLPYVVYG-HTV-LSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS-LFGAT-VHDG  197 (315)
T ss_dssp             TTTTEEEECC--CCSSCCBS-CEE-EEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB-SCEEE-EETT
T ss_pred             CCCCcEeECC--CCCCcccc-eeE-EEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh-ceEEE-EECC
Confidence            8765421111  11111111 112 2235666777765      2469999998876544322222111 11222 2367


Q ss_pred             cEEEEeCCCC-----cEEEEEcCCCce
Q 026679          157 QYVVSGSGDG-----TLHAWNINTRNE  178 (235)
Q Consensus       157 ~~l~~~~~dg-----~i~v~d~~~~~~  178 (235)
                      ++++.|+.++     .+.+||..+.+-
T Consensus       198 ~iyv~GG~~~~~~~~~~~~yd~~~~~W  224 (315)
T 4asc_A          198 RIIVAAGVTDTGLTSSAEVYSITDNKW  224 (315)
T ss_dssp             EEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred             EEEEEeccCCCCccceEEEEECCCCeE
Confidence            7778877654     488899877644

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.76  E-value=0.0043  Score=46.18  Aligned_cols=144  Identities=14%  Similarity=0.199  Sum_probs=80.8

Q ss_pred             eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE--eecCCCcceeEEEEccC---CCeEEEe---cCCCcEEEEEcC
Q 026679           59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF--LVGGDTAEVCDIKFSND---GKSMLLT---TTNNNIYVLDAY  130 (235)
Q Consensus        59 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~---~~~l~~~---~~d~~i~~~d~~  130 (235)
                      .+++.|+|.++++--..|.|++++...+........  ...........++++|+   ...|++.   ..++.|.-|.+.
T Consensus        36 ~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~  115 (347)
T 3das_A           36 GLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYD  115 (347)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBC
T ss_pred             EEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeC
Confidence            389999998776665589999987654332110000  01123456789999995   3344432   245567777765


Q ss_pred             CCc--------eeeeec-c-CCCCCcceeeEEeCCCcEEEEeCC-------------CCcEEEEEcCCCce--------e
Q 026679          131 GGE--------KRCGFS-L-EPSPNTNTEATFTPDGQYVVSGSG-------------DGTLHAWNINTRNE--------V  179 (235)
Q Consensus       131 ~~~--------~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~v~d~~~~~~--------~  179 (235)
                      .+.        ....+. . .........+.|.|||.+.++.+.             .|.|.-.+.. ++.        .
T Consensus       116 ~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~nPf~~~  194 (347)
T 3das_A          116 EKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPGNPFPGS  194 (347)
T ss_dssp             TTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTTCSSTTC
T ss_pred             CCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCCCCCCCC
Confidence            421        111111 1 111123567999999987777542             3555555543 220        1


Q ss_pred             eee-cCCCcceeEEEeecCCCEEEEc
Q 026679          180 ACW-NGNIGVVACLKWAPRRAMFVAA  204 (235)
Q Consensus       180 ~~~-~~~~~~v~~~~~~~~~~~l~~~  204 (235)
                      ..+ .+|. ....++|+|++.+.++-
T Consensus       195 ~i~a~G~R-Np~Gla~dp~G~L~~~d  219 (347)
T 3das_A          195 PVYSYGHR-NVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             CEEEBCCS-BCCEEEECTTCCEEEEE
T ss_pred             eEEeeCCC-CcceEEECCCCCEEEEe
Confidence            122 2443 45789999988776654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.69  E-value=0.0085  Score=44.82  Aligned_cols=185  Identities=12%  Similarity=0.151  Sum_probs=97.2

Q ss_pred             cceeEEEeecC---CCeeEEEec-c-----ceEEEEecCcce-----ee-eeeec-----cCCceEEEcCCCCEEEEEec
Q 026679           15 ERVISLCMSPV---NDSFMSGSL-D-----HSVRIWDLRVNA-----CQ-GILRL-----RGRPTVAFDQQGLVFAVAME   74 (235)
Q Consensus        15 ~~v~~~~~~~~---~~~l~s~~~-d-----~~i~vwd~~~~~-----~~-~~~~~-----~~~~~~~~~~~~~~l~~~~~   74 (235)
                      .....|+|+|+   +..|+.+.. .     ..|..++...+.     .+ ..+..     |....++|.|+|.++++.+.
T Consensus        75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~  154 (352)
T 2ism_A           75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGE  154 (352)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCC
T ss_pred             CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECC
Confidence            45788999998   555554433 2     567788776431     11 11221     22334999999977666432


Q ss_pred             -------------CCeEEEEeccCCCC----------CCceeEeecCCCcceeEEEEcc-CCCeEEEecCCCc-------
Q 026679           75 -------------AGAIKLFDSRSYDK----------GPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNN-------  123 (235)
Q Consensus        75 -------------dg~v~i~d~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~-------  123 (235)
                                   .|.|.-++....-.          ...... ..++ .....++|+| +++.+++-.....       
T Consensus       155 ~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~-a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~d  232 (352)
T 2ism_A          155 VYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVY-SLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHD  232 (352)
T ss_dssp             TTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEE-EECC-SEECCCEECTTTCCEEEEEECC------CCC
T ss_pred             CCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEE-EEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence                         24566666543100          001111 1122 2356789999 5554443322222       


Q ss_pred             -EEEEEcCCCce----------------eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCce------ee
Q 026679          124 -IYVLDAYGGEK----------------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE------VA  180 (235)
Q Consensus       124 -i~~~d~~~~~~----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------~~  180 (235)
                       |.+.  ..+..                ........+ .....++| .+|.++++.-..+.|...++.....      ..
T Consensus       233 ei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~  308 (352)
T 2ism_A          233 EVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVE  308 (352)
T ss_dssp             EEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEe--ccCCcCCCCcccCCCCCCCCcCCeEecCCC-CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchh
Confidence             3333  22220                001111111 23456777 4677777766677888887764331      12


Q ss_pred             eecCCCcceeEEEeecCCCEEEEcc
Q 026679          181 CWNGNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       181 ~~~~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      .+......+..+++.|||.++++..
T Consensus       309 ~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          309 TALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             eecccCCCeeEEEECCCCcEEEEEe
Confidence            2212235789999999998777664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.68  E-value=0.002  Score=48.25  Aligned_cols=141  Identities=15%  Similarity=0.213  Sum_probs=78.2

Q ss_pred             eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEe-ecCCCcceeEEEEccC---CCeEEEecC----C----CcEEE
Q 026679           59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL-VGGDTAEVCDIKFSND---GKSMLLTTT----N----NNIYV  126 (235)
Q Consensus        59 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~---~~~l~~~~~----d----~~i~~  126 (235)
                      .++|.|+|+ |+++..+|.|.++|. .+. ....... ..........++++|+   +..|+++..    +    ..|..
T Consensus        33 ~ia~~pdG~-l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r  109 (354)
T 3a9g_A           33 SIAPLGGGR-YLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIR  109 (354)
T ss_dssp             EEEEEETTE-EEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEE
T ss_pred             EEEEcCCCe-EEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEE
Confidence            489999997 455566699998873 222 1110000 1112345789999997   445555443    2    57888


Q ss_pred             EEcCCC--c---e--e-eeeccCCCCCcceeeEEeCCCcEEEEeCC-------------CCcEEEEEcCCCce-------
Q 026679          127 LDAYGG--E---K--R-CGFSLEPSPNTNTEATFTPDGQYVVSGSG-------------DGTLHAWNINTRNE-------  178 (235)
Q Consensus       127 ~d~~~~--~---~--~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~v~d~~~~~~-------  178 (235)
                      |+....  .   .  + ..+. .........++|.|||.++++.+.             .|.|.-++.. ++.       
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~-~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~npf~  187 (354)
T 3a9g_A          110 GRLDGSTFKLKEVKTLIDGIP-GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNPFP  187 (354)
T ss_dssp             EEECSSSCCEEEEEEEEEEEE-CCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSSST
T ss_pred             EEECCCCcCcCccEEEEEcCC-CCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCCCC
Confidence            887654  1   1  1 1122 111122467999999987776443             2456666653 321       


Q ss_pred             -eeee-cCCCcceeEEEeec-CCCEEEEcc
Q 026679          179 -VACW-NGNIGVVACLKWAP-RRAMFVAAS  205 (235)
Q Consensus       179 -~~~~-~~~~~~v~~~~~~~-~~~~l~~~~  205 (235)
                       ...+ .++ .....++|+| ++.++++-.
T Consensus       188 ~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          188 NSPIWSYGH-RNPQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             TCCEEEECC-SCCCEEEECTTTCCEEEEEC
T ss_pred             CCcEEEEcc-CCcceEEEeCCCCCEEEEec
Confidence             1111 233 3457899999 666665543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.67  E-value=0.009  Score=44.67  Aligned_cols=100  Identities=11%  Similarity=0.010  Sum_probs=56.4

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceee--eeee----ccCCc-eEEEcCC---CCEEEEEec-C-----CeEE
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ--GILR----LRGRP-TVAFDQQ---GLVFAVAME-A-----GAIK   79 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~----~~~~~-~~~~~~~---~~~l~~~~~-d-----g~v~   79 (235)
                      .-..++|.|+|+++++ ..++.|++++  +++..  ..+.    ..... -++++|+   +..|+++.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4578999999985554 5669999998  34322  1111    11122 2999998   555555443 2     6787


Q ss_pred             EEeccCCCCCCc-eeEe-ec---CCCcceeEEEEccCCCeEEEe
Q 026679           80 LFDSRSYDKGPF-DTFL-VG---GDTAEVCDIKFSNDGKSMLLT  118 (235)
Q Consensus        80 i~d~~~~~~~~~-~~~~-~~---~~~~~v~~~~~~~~~~~l~~~  118 (235)
                      .++......... .... +.   ........++|.|||...++.
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            888764311000 0111 21   111234689999999765554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.67  E-value=0.0029  Score=43.64  Aligned_cols=146  Identities=13%  Similarity=0.063  Sum_probs=79.7

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCccee------eeeeec---cCCceEEEcCCCCEEEEEecCCeEEEEeccC
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC------QGILRL---RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~------~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      ..+..++|+|+|.+.+.  .+|.+.-.+..+...      -..+-.   +.-..+.|.|+|.+.++  .||.|.-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            36789999998875555  677766666543111      111111   11245889999998888  669888777543


Q ss_pred             CCCCCce-e-Eee-cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCcee-----eeeccCCCCCcceeeEEeCCCc
Q 026679           86 YDKGPFD-T-FLV-GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR-----CGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        86 ~~~~~~~-~-~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      ....... . ..+ ..-=..+..+.+.|+|.+.++.  |+.++-....++...     ........-...+-+.|.|++.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            3221110 0 111 1111467899999999865555  777654333211100     0011111112234466888887


Q ss_pred             EEEEeCCCCcE
Q 026679          158 YVVSGSGDGTL  168 (235)
Q Consensus       158 ~l~~~~~dg~i  168 (235)
                      +.++.  +|.+
T Consensus       195 l~~v~--~g~~  203 (236)
T 1tl2_A          195 LFGVQ--GGKF  203 (236)
T ss_dssp             EEEEE--TTEE
T ss_pred             EEEEe--CCeE
Confidence            77665  6633

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.67  E-value=0.015  Score=47.08  Aligned_cols=192  Identities=11%  Similarity=0.035  Sum_probs=108.9

Q ss_pred             ceeEEEeecCCCeeE-EEeccceEEEEecCcceeeeeeecc--CCceEEEcCCCC-EEEEEecCCeEEEEeccCCCCCCc
Q 026679           16 RVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLR--GRPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPF   91 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~   91 (235)
                      .+.+++|.+.+..|+ +-...+.|+.++++.......+...  ....+++++.+. ++++-...+.|.+.++.....   
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~---  426 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR---  426 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE---
Confidence            456788888555544 4445678888887654333333222  233489987554 555555678999998875432   


Q ss_pred             eeEeecCCCcceeEEEEccCCCeEEEecC--CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe-CCCCcE
Q 026679           92 DTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG-SGDGTL  168 (235)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i  168 (235)
                       .......-.....+++.|....|+.+..  ...|...++..... ..+. ...-.....+++++++..|+.+ +..+.|
T Consensus       427 -~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~-~~~l~~P~GlalD~~~~~LY~aD~~~~~I  503 (619)
T 3s94_A          427 -KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLV-NTSLGWPNGLALDYDEGKIYWGDAKTDKI  503 (619)
T ss_dssp             -EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             -EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEE-eCCCCCCeeeEEcccCCEEEEEECCCCEE
Confidence             2222233456789999997445555442  46787777754332 2222 2223457889999876666555 556789


Q ss_pred             EEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          169 HAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       169 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                      ..+++........+........+|+...+  +|..++   +.|...+..+
T Consensus       504 ~~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~  551 (619)
T 3s94_A          504 EVMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRS  551 (619)
T ss_dssp             EEEESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSS
T ss_pred             EEEecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCC
Confidence            99998543322222222233455666543  444443   3344444433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.65  E-value=0.011  Score=45.05  Aligned_cols=136  Identities=14%  Similarity=0.253  Sum_probs=85.4

Q ss_pred             cCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecC--CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce------
Q 026679           63 DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG--DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK------  134 (235)
Q Consensus        63 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------  134 (235)
                      ..+|..++.+- ++.||.-++....  .........  .-..+..+..+|+|++|+..+ +..|.+..+..+..      
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCC--cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence            33444444443 3677777776432  223333332  223678899999999888775 45788888873321      


Q ss_pred             ------eeeeccCC----CCCcceeeEEeCC---CcEEEEeCCCCcEEEEEcCCCc--eeeeec---------CCCccee
Q 026679          135 ------RCGFSLEP----SPNTNTEATFTPD---GQYVVSGSGDGTLHAWNINTRN--EVACWN---------GNIGVVA  190 (235)
Q Consensus       135 ------~~~~~~~~----~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~--~~~~~~---------~~~~~v~  190 (235)
                            .+.+....    ...+|..+.|+|-   +..|++-..|+.|++||+....  +. .+.         .....|.
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~  183 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT  183 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence                  11223221    2467999999994   5689999999999999997522  11 221         1225688


Q ss_pred             EEEeecCCCEEEE
Q 026679          191 CLKWAPRRAMFVA  203 (235)
Q Consensus       191 ~~~~~~~~~~l~~  203 (235)
                      +++|.+++-.|..
T Consensus       184 S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          184 DLEFSKDGLTLYC  196 (452)
T ss_dssp             EEEECTTSSCEEE
T ss_pred             EEEEcCCCcEEEE
Confidence            8999988766555

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.60  E-value=0.0049  Score=47.82  Aligned_cols=103  Identities=12%  Similarity=0.114  Sum_probs=53.5

Q ss_pred             eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeec------CCCcceeEEEEccC---CCeEEEecC---------
Q 026679           59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG------GDTAEVCDIKFSND---GKSMLLTTT---------  120 (235)
Q Consensus        59 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~~~---------  120 (235)
                      .++|.|+|+++++-...+.|.+++..++...  ....+.      ........++|+|+   +..|++...         
T Consensus        31 ~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~  108 (454)
T 1cru_A           31 ALLWGPDNQIWLTERATGKILRVNPESGSVK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK  108 (454)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred             EEEEcCCCcEEEEEcCCCEEEEEECCCCcEe--EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence            3778888876655443346777765432211  111111      12345678999985   444544432         


Q ss_pred             ----CCcEEEEEcCCC--ce---eeeec-c-CCCCCcceeeEEeCCCcEEEEeC
Q 026679          121 ----NNNIYVLDAYGG--EK---RCGFS-L-EPSPNTNTEATFTPDGQYVVSGS  163 (235)
Q Consensus       121 ----d~~i~~~d~~~~--~~---~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~  163 (235)
                          ...|..|+...+  ..   ...+. . .........++|.|||.+.++.+
T Consensus       109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                235666665332  11   11111 1 11123468899999998777644

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.57  E-value=0.012  Score=43.25  Aligned_cols=149  Identities=13%  Similarity=0.170  Sum_probs=75.0

Q ss_pred             cCCCeeEEEec----cc-------eEEEEecCcceeeeeeeccCCc--eEEEcCCCCEEEEEecC-------CeEEEEec
Q 026679           24 PVNDSFMSGSL----DH-------SVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEA-------GAIKLFDS   83 (235)
Q Consensus        24 ~~~~~l~s~~~----d~-------~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~d-------g~v~i~d~   83 (235)
                      .++..++.|+.    ++       .+.+||..+++-...-..+...  ..+..-++++++.|+.+       ..+.+||+
T Consensus        55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~  134 (318)
T 2woz_A           55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDP  134 (318)
T ss_dssp             SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred             ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeC
Confidence            35667777763    11       1677887765433221111111  12222367788888764       35778888


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                      .+.+.....  .+...... .+++ ..+++.++.|+.      -..+.+||+.+.+....-....... -.+++. -+++
T Consensus       135 ~~~~W~~~~--~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~-~~~~  208 (318)
T 2woz_A          135 VAAKWSEVK--NLPIKVYG-HNVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS-MFGVAI-HKGK  208 (318)
T ss_dssp             TTTEEEEEC--CCSSCEES-CEEE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEE-ETTE
T ss_pred             CCCCEeECC--CCCCcccc-cEEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc-cceEEE-ECCE
Confidence            764421100  01110011 1122 246666677764      2459999998876544322222111 112222 3667


Q ss_pred             EEEEeCCC-----CcEEEEEcCCCce
Q 026679          158 YVVSGSGD-----GTLHAWNINTRNE  178 (235)
Q Consensus       158 ~l~~~~~d-----g~i~v~d~~~~~~  178 (235)
                      .++.|+.+     ..+.+||+.+.+-
T Consensus       209 iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          209 IVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             EEEEcCcCCCCccceEEEEECCCCeE
Confidence            77777653     3477899876653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.53  E-value=0.0074  Score=45.17  Aligned_cols=144  Identities=11%  Similarity=0.177  Sum_probs=76.1

Q ss_pred             eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE--eecCCCcceeEEEEccC---CCeEEEec-C-------CCcEE
Q 026679           59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF--LVGGDTAEVCDIKFSND---GKSMLLTT-T-------NNNIY  125 (235)
Q Consensus        59 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~---~~~l~~~~-~-------d~~i~  125 (235)
                      .+++.|+|+.++++...|.|++++............  ...........++++|+   +..|++.. .       ...|.
T Consensus        22 ~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~  101 (353)
T 2g8s_A           22 ALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVG  101 (353)
T ss_dssp             EEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEE
Confidence            488999998344555678888887432111000000  01112345688999995   44454443 2       23577


Q ss_pred             EEEcCCCc--e--ee-eec-cC---CCCCcceeeEEeCCCcEEEEeCC-------------CCcEEEEEcCCCc------
Q 026679          126 VLDAYGGE--K--RC-GFS-LE---PSPNTNTEATFTPDGQYVVSGSG-------------DGTLHAWNINTRN------  177 (235)
Q Consensus       126 ~~d~~~~~--~--~~-~~~-~~---~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~v~d~~~~~------  177 (235)
                      .|++....  .  .. .+. ..   ........++|.|||.+.++.+.             .|.|.-++.. ++      
T Consensus       102 r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~p~~np  180 (353)
T 2g8s_A          102 YGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GEIPDDNP  180 (353)
T ss_dssp             EEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SCCCTTCT
T ss_pred             EEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CCCCCCCC
Confidence            77765431  1  11 111 11   11122467999999976666433             2467777754 32      


Q ss_pred             -------eeeee-cCCCcceeEEEeec-CCCEEEEc
Q 026679          178 -------EVACW-NGNIGVVACLKWAP-RRAMFVAA  204 (235)
Q Consensus       178 -------~~~~~-~~~~~~v~~~~~~~-~~~~l~~~  204 (235)
                             ....+ .++ .....++|+| ++.++++-
T Consensus       181 f~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d  215 (353)
T 2g8s_A          181 FIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNE  215 (353)
T ss_dssp             TTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEE
T ss_pred             CcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEe
Confidence                   11122 233 3468999999 56555543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.49  E-value=0.01  Score=46.10  Aligned_cols=105  Identities=10%  Similarity=0.125  Sum_probs=58.5

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC---------Cc-eEEEcCC---CCEEEEEec-------
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---------RP-TVAFDQQ---GLVFAVAME-------   74 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------~~-~~~~~~~---~~~l~~~~~-------   74 (235)
                      ..-+.|+|.|+|+++++-...+.|++++..++..........         .. -++++|+   +..|.++..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            355799999999877765444578888765554332222111         11 3899995   555544442       


Q ss_pred             ------CCeEEEEeccCCCCC---CceeEe-ec-CCCcceeEEEEccCCCeEEEec
Q 026679           75 ------AGAIKLFDSRSYDKG---PFDTFL-VG-GDTAEVCDIKFSNDGKSMLLTT  119 (235)
Q Consensus        75 ------dg~v~i~d~~~~~~~---~~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~  119 (235)
                            ...|.-++.......   ....+. +. ........++|.|||.+.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  235666665432110   001111 11 1223478899999998777654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.49  E-value=0.015  Score=42.49  Aligned_cols=180  Identities=8%  Similarity=0.000  Sum_probs=103.4

Q ss_pred             EEeecCCCeeEEEecc--------------ceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEe--cCC--eEEEE
Q 026679           20 LCMSPVNDSFMSGSLD--------------HSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAM--EAG--AIKLF   81 (235)
Q Consensus        20 ~~~~~~~~~l~s~~~d--------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg--~v~i~   81 (235)
                      --+++++++|+-+...              ..|+..+++..+.....   ......++++++.|+...  .++  .|...
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~---~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~  134 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD---PDPCIYASLIGNYIYYLHYDTQTATSLYRI  134 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE---CSCEEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee---cCCccEEEEeCCEEEEEeecCCCCceEEEE
Confidence            3467788887766542              45777777655433322   223457788888888776  344  44444


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  160 (235)
                      ++.....     ..+..+..    .+++|+++.|+..+. ...|...++..+.....+.  . .  . ...+.|++.+|+
T Consensus       135 ~~dGs~~-----~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~-~--~-~~~~~P~g~~iy  199 (302)
T 3s25_A          135 RIDGEEK-----KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--C-N--C-YKPVVLDDTNVY  199 (302)
T ss_dssp             ETTSCCC-----EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--S-C--E-EEEEEEETTEEE
T ss_pred             ECCCCCe-----EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--C-C--c-cceeeecCCEEE
Confidence            5543221     12222221    456788888887665 6789999987665443322  1 1  1 234669888887


Q ss_pred             EeCCC--CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc----cceEEeeCCCCCCCCCC
Q 026679          161 SGSGD--GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS----SVLSFWIPNPSSNSTDE  222 (235)
Q Consensus       161 ~~~~d--g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~i~iw~~~~~~~~~~~  222 (235)
                      .....  ..|..-++.... ...+..  ..+  ..|+|++.+|..++    ..|..-++++.....+.
T Consensus       200 ~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~  262 (302)
T 3s25_A          200 YMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELA  262 (302)
T ss_dssp             EEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEE
T ss_pred             EEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEee
Confidence            65433  357666765443 333332  223  34788888887652    34666666665544443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.47  E-value=0.018  Score=42.88  Aligned_cols=145  Identities=14%  Similarity=0.092  Sum_probs=79.6

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec-------cCC-ceEEEcCC---CCEEEEE-e--cCCeEEE
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-------RGR-PTVAFDQQ---GLVFAVA-M--EAGAIKL   80 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-------~~~-~~~~~~~~---~~~l~~~-~--~dg~v~i   80 (235)
                      ..-+.|+|.|+|.++++-...|.|++++...++.......       ... .-++++|+   +..|.+. +  .++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            4567899999998777765589999998655543222111       111 23899995   3444443 2  3456666


Q ss_pred             EeccCCC-----CCCce-eEe-ec-CCCcceeEEEEccCCCeEEEecC-------------CCcEEEEEcCCCce-----
Q 026679           81 FDSRSYD-----KGPFD-TFL-VG-GDTAEVCDIKFSNDGKSMLLTTT-------------NNNIYVLDAYGGEK-----  134 (235)
Q Consensus        81 ~d~~~~~-----~~~~~-~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~~~-----  134 (235)
                      |.....+     ..... .+. +. ........+.|.|||.+.++.+.             .|.|.-++... +.     
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG-~ip~~nP  190 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG-EPAPGNP  190 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS-SBCTTCS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC-CccCCCC
Confidence            6665421     11111 111 11 12223567999999987666442             35565566432 21     


Q ss_pred             ---eeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679          135 ---RCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus       135 ---~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                         ...+. ..+ .....++|+|+|.+.++-
T Consensus       191 f~~~~i~a-~G~-RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          191 FPGSPVYS-YGH-RNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             STTCCEEE-BCC-SBCCEEEECTTCCEEEEE
T ss_pred             CCCCeEEe-eCC-CCcceEEECCCCCEEEEe
Confidence               01111 122 235678999988766553

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00034  Score=51.81  Aligned_cols=113  Identities=12%  Similarity=0.172  Sum_probs=71.5

Q ss_pred             CeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEc-C----CCCEEEEE-ecCCeEEEEeccCCCCCCceeEeecC-
Q 026679           27 DSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFD-Q----QGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGG-   98 (235)
Q Consensus        27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~-~----~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~-   98 (235)
                      ..++.++.||.|.-.|.++|+....++... .+.+... +    ++..++.. ..||.+..++..++...  ....... 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~--~~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK--LPLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE--EEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE--eeeccccc
Confidence            478889999999999999999998887661 1223221 1    22333343 57999999998765321  1111110 


Q ss_pred             -CCcceeE---EEE-c----cCCCeEEEecCCCcEEEEEcCCCceeeeeccC
Q 026679           99 -DTAEVCD---IKF-S----NDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE  141 (235)
Q Consensus        99 -~~~~v~~---~~~-~----~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  141 (235)
                       ..+++..   ... .    ..+..+++++.+|.+...|+++|+.+..+...
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence             1112211   000 0    13557899999999999999999999887654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.26  E-value=0.027  Score=46.28  Aligned_cols=180  Identities=8%  Similarity=0.054  Sum_probs=91.4

Q ss_pred             CCCeeEEEeccc------eEEEEecCcceeeee--eeccC-CceEEEcCCCCEEEEEecCC--eEEEEeccCCCCCCcee
Q 026679           25 VNDSFMSGSLDH------SVRIWDLRVNACQGI--LRLRG-RPTVAFDQQGLVFAVAMEAG--AIKLFDSRSYDKGPFDT   93 (235)
Q Consensus        25 ~~~~l~s~~~d~------~i~vwd~~~~~~~~~--~~~~~-~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~   93 (235)
                      ++..++.|+.++      .+.+||..+.+-...  +.... ....+...++++++.|+.++  .+.+||..+........
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~  530 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP  530 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence            566777776543      477888876532222  22111 12244435888899888755  68899987754311110


Q ss_pred             E-eecCCCcceeEEEEccC-CCeEEEecC--C-----CcEEEEEcCCCc------eeeeeccCCCCCcceeeEEeCCCcE
Q 026679           94 F-LVGGDTAEVCDIKFSND-GKSMLLTTT--N-----NNIYVLDAYGGE------KRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        94 ~-~~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----~~i~~~d~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      . ...........+.+..+ ++.++.|+.  +     ..+..||+.+.+      .............-.++....++++
T Consensus       531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~i  610 (695)
T 2zwa_A          531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL  610 (695)
T ss_dssp             SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEE
T ss_pred             CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEE
Confidence            0 01111122233455554 666777765  2     458999998877      2221111111111122333334778


Q ss_pred             EEEeCC--------CCcEEEEEcCCCceeeeecCCCc------c---eeEEEeecCCCEEEEcc
Q 026679          159 VVSGSG--------DGTLHAWNINTRNEVACWNGNIG------V---VACLKWAPRRAMFVAAS  205 (235)
Q Consensus       159 l~~~~~--------dg~i~v~d~~~~~~~~~~~~~~~------~---v~~~~~~~~~~~l~~~~  205 (235)
                      ++.|+.        ...+.+||..+.+-. .......      +   -.+....+++++++.|+
T Consensus       611 yv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GG  673 (695)
T 2zwa_A          611 LIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG  673 (695)
T ss_dssp             EEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECC
T ss_pred             EEECCccCCCCCCCCCeEEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeC
Confidence            888874        345999999876543 1111100      0   02344445667777776

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.24  E-value=0.062  Score=44.17  Aligned_cols=191  Identities=12%  Similarity=0.084  Sum_probs=101.0

Q ss_pred             cCCCeeEEEecc----ceEEEEecCcceeeeee-e-----ccC---CceEEEcC-CCCEEEEEecC------CeEEEEec
Q 026679           24 PVNDSFMSGSLD----HSVRIWDLRVNACQGIL-R-----LRG---RPTVAFDQ-QGLVFAVAMEA------GAIKLFDS   83 (235)
Q Consensus        24 ~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~-~-----~~~---~~~~~~~~-~~~~l~~~~~d------g~v~i~d~   83 (235)
                      .++..++.|+.+    ..+.+||..+++-...- .     ...   ...++..+ ++++++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            345667777653    35778888776433222 1     111   12244443 77888888754      35788888


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC--cEEEEEcCCCceeeeec---cCCCCCcceeeEEeCC-Cc
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN--NIYVLDAYGGEKRCGFS---LEPSPNTNTEATFTPD-GQ  157 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~-~~  157 (235)
                      .+.......  .+.. ...-.+++...++..++.|+.++  .+.+||..+.+....-.   ..........+.+..+ ++
T Consensus       476 ~t~~W~~~~--~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~  552 (695)
T 2zwa_A          476 KTREWSMIK--SLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ  552 (695)
T ss_dssp             TTTEEEECC--CCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred             CCCcEEECC--CCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence            764421110  0111 11112233324777788887654  79999998876543321   1111122233555655 67


Q ss_pred             EEEEeCC--C-----CcEEEEEcCCCce-----eeeecC---CCcceeEEEeecCCCEEEEcc----------cceEEee
Q 026679          158 YVVSGSG--D-----GTLHAWNINTRNE-----VACWNG---NIGVVACLKWAPRRAMFVAAS----------SVLSFWI  212 (235)
Q Consensus       158 ~l~~~~~--d-----g~i~v~d~~~~~~-----~~~~~~---~~~~v~~~~~~~~~~~l~~~~----------~~i~iw~  212 (235)
                      .++.|+.  +     ..+.+||+.+.+.     -..+..   ....-.++....++.+++.|+          ..+.+||
T Consensus       553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence            7788875  2     3588999987761     111111   111112333344366666665          2378888


Q ss_pred             CCCCC
Q 026679          213 PNPSS  217 (235)
Q Consensus       213 ~~~~~  217 (235)
                      +.+..
T Consensus       633 ~~t~~  637 (695)
T 2zwa_A          633 PLSET  637 (695)
T ss_dssp             TTTTE
T ss_pred             CCCCe
Confidence            87643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.07  E-value=0.055  Score=40.49  Aligned_cols=187  Identities=13%  Similarity=0.176  Sum_probs=100.2

Q ss_pred             cceeEEEeecC---CCeeEEEec----c----ceEEEEecCcc-------eee-eeee---ccCCceEEEcCCCCEEEEE
Q 026679           15 ERVISLCMSPV---NDSFMSGSL----D----HSVRIWDLRVN-------ACQ-GILR---LRGRPTVAFDQQGLVFAVA   72 (235)
Q Consensus        15 ~~v~~~~~~~~---~~~l~s~~~----d----~~i~vwd~~~~-------~~~-~~~~---~~~~~~~~~~~~~~~l~~~   72 (235)
                      .....|+++|+   +..|+.+..    +    ..|..|+....       +.+ ..+.   .|....++|.|+|.++++.
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            45788999997   445544332    3    56777776543       111 1122   1233449999999877764


Q ss_pred             ec-------------CCeEEEEeccCCCC--CC--ceeEeecCCCcceeEEEEcc-CCCeEEEecCC----CcEEEEEcC
Q 026679           73 ME-------------AGAIKLFDSRSYDK--GP--FDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTN----NNIYVLDAY  130 (235)
Q Consensus        73 ~~-------------dg~v~i~d~~~~~~--~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d----~~i~~~d~~  130 (235)
                      +.             .|.|.-++....-.  .+  .......++ .....++|+| +++ |+++...    ..|.+..  
T Consensus       153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~--  228 (354)
T 3a9g_A          153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGV-MVATEHGPVGHDEVNIIL--  228 (354)
T ss_dssp             CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCC-EEEEECCSSSCCEEEEEC--
T ss_pred             CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCC-EEEEecCCCCCcEEEEec--
Confidence            43             24565555543100  00  001112233 2345799999 565 4444332    1244332  


Q ss_pred             CCce----------------eeeeccCCCCCcceeeEEe-------CCCcEEEEeCCCCcEEEEEcCCC-cee--eee-c
Q 026679          131 GGEK----------------RCGFSLEPSPNTNTEATFT-------PDGQYVVSGSGDGTLHAWNINTR-NEV--ACW-N  183 (235)
Q Consensus       131 ~~~~----------------~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~dg~i~v~d~~~~-~~~--~~~-~  183 (235)
                      .+..                ...............++|.       .+|+++++.-..+.|...++... +..  ..+ .
T Consensus       229 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~  308 (354)
T 3a9g_A          229 KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK  308 (354)
T ss_dssp             TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT
T ss_pred             CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc
Confidence            2210                0111111112346777873       56777777777788988888643 221  222 2


Q ss_pred             CCCcceeEEEeecCCCEEEEcc
Q 026679          184 GNIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       184 ~~~~~v~~~~~~~~~~~l~~~~  205 (235)
                      .....+..+++.|||.+.++..
T Consensus       309 ~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          309 NVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCeeEEEECCCCcEEEEEe
Confidence            2245789999999998777654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.04  E-value=0.058  Score=40.16  Aligned_cols=145  Identities=6%  Similarity=-0.006  Sum_probs=74.2

Q ss_pred             CCCeeEEEecc-ceEEEEecCc--ce--eeeeee-ccCCceEEEcCCCCEEEEEec-C---------CeEEEEeccCCCC
Q 026679           25 VNDSFMSGSLD-HSVRIWDLRV--NA--CQGILR-LRGRPTVAFDQQGLVFAVAME-A---------GAIKLFDSRSYDK   88 (235)
Q Consensus        25 ~~~~l~s~~~d-~~i~vwd~~~--~~--~~~~~~-~~~~~~~~~~~~~~~l~~~~~-d---------g~v~i~d~~~~~~   88 (235)
                      ++..++.|+.+ ..+.++|+.+  .+  .+..+. .......+..-++++++.|+. +         ..+.+||+.+...
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            56666666643 4688888863  22  222222 111111222236777777776 2         4688899877543


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEecCC---------------------------------------CcEEEEEc
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---------------------------------------NNIYVLDA  129 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------------------~~i~~~d~  129 (235)
                      ....... ........ + ...+++.++.|+.+                                       ..+.+||.
T Consensus        99 ~~~~~~~-p~~r~~~~-~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           99 VKLMSHA-PMGMAGHV-T-FVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             EECSCCC-SSCCSSEE-E-EEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             EECCCCC-Ccccccce-E-EEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence            1111110 01111111 2 22467777777754                                       57999999


Q ss_pred             CCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC------CCcEEEEEc
Q 026679          130 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG------DGTLHAWNI  173 (235)
Q Consensus       130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~v~d~  173 (235)
                      .+.+....-........-.+++. -++++++.|+.      ...+.+||+
T Consensus       176 ~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          176 STQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             TTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             CCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence            88765544333221111122332 36677777764      345777876

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.03  E-value=0.069  Score=40.96  Aligned_cols=174  Identities=9%  Similarity=0.068  Sum_probs=101.8

Q ss_pred             EEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecC
Q 026679           20 LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG   98 (235)
Q Consensus        20 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~   98 (235)
                      .-.+|..+.+|.=. ..++.|+|+++.+.++.+...+..+ ..|-.+.. |+.. .+..|+-|++.... .+...+....
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~-l~lV-T~taVyHWsi~~~s-~P~kvFdR~~  146 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VALV-TDNAVYHWSMEGES-QPVKMFDRHS  146 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTE-EEEE-CSSEEEEEESSSSC-CCEEEEECCG
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCe-EEEE-cCCeeEEecccCCC-Cchhheecch
Confidence            34677666666544 6799999999999999888765433 66655443 3333 24589999987632 3332332211


Q ss_pred             --CCcceeEEEEccCCCeEEEecC-------CCcEEEEEcCCCce-----------------------------------
Q 026679           99 --DTAEVCDIKFSNDGKSMLLTTT-------NNNIYVLDAYGGEK-----------------------------------  134 (235)
Q Consensus        99 --~~~~v~~~~~~~~~~~l~~~~~-------d~~i~~~d~~~~~~-----------------------------------  134 (235)
                        ....|..-..+++.++++..+-       .|.+.+|....+..                                   
T Consensus       147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~  226 (494)
T 1bpo_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  226 (494)
T ss_dssp             GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCC
T ss_pred             hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence              1245555666777776654332       34566665532211                                   


Q ss_pred             -eeeeccC---------------------CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEE
Q 026679          135 -RCGFSLE---------------------PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACL  192 (235)
Q Consensus       135 -~~~~~~~---------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~  192 (235)
                       ++.++..                     ....-..++..++.-..++.-+.-|.|++||+.++.++..-+-...+|..-
T Consensus       227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t  306 (494)
T 1bpo_A          227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  306 (494)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEe
Confidence             1111110                     001222345566666677788889999999999999887665555555444


Q ss_pred             EeecC
Q 026679          193 KWAPR  197 (235)
Q Consensus       193 ~~~~~  197 (235)
                      +-+..
T Consensus       307 ~~~~~  311 (494)
T 1bpo_A          307 APHEA  311 (494)
T ss_dssp             EEETT
T ss_pred             cccCC
Confidence            44433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.03  E-value=0.053  Score=39.57  Aligned_cols=177  Identities=9%  Similarity=0.022  Sum_probs=98.5

Q ss_pred             eecCCCeeEEEe--ccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecC--------------CeEEEEeccC
Q 026679           22 MSPVNDSFMSGS--LDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEA--------------GAIKLFDSRS   85 (235)
Q Consensus        22 ~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------g~v~i~d~~~   85 (235)
                      |++++.+++-..  .++.|...+.+... ...+...  .+--+++++..|+-+...              ..|+..++..
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            345566665543  24556666653333 3333222  234567888888877653              3566666665


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEec----CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT----TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                      .+.    .. +..  .  ....|+++++.|+...    .+..|+..++...... .+...  .  +  ..++|+++.|+.
T Consensus        98 ~~~----~~-l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~--~--~--~~~~~~g~~iy~  161 (302)
T 3s25_A           98 HGS----TV-LDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNH--Y--L--FTCNTSDRYFYY  161 (302)
T ss_dssp             CCC----EE-EEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESS--C--C--CCSEEETTEEEE
T ss_pred             Ccc----eE-eec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCC--C--c--eEeeEECCEEEE
Confidence            442    11 111  1  1236788888888775    3456777776544333 22222  1  1  456888888876


Q ss_pred             eCC-CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--c--ceEEeeCCCCCCCCC
Q 026679          162 GSG-DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S--VLSFWIPNPSSNSTD  221 (235)
Q Consensus       162 ~~~-dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~i~iw~~~~~~~~~~  221 (235)
                      .+. ...|++.++..+.....+.+   ... ..+.|++.+|+-..  +  .|..-++++.....+
T Consensus       162 t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~L  222 (302)
T 3s25_A          162 NNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVL  222 (302)
T ss_dssp             ECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEEC
T ss_pred             EeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEE
Confidence            654 67888888866554433332   222 34669998888765  2  355555665554433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.02  E-value=0.055  Score=39.60  Aligned_cols=181  Identities=10%  Similarity=0.044  Sum_probs=90.4

Q ss_pred             eeEEEeccceEEEEecCcceeeee-eeccC--CceEEEcCCCCEEEEEec----CC-------eEEEEeccCCCCCCcee
Q 026679           28 SFMSGSLDHSVRIWDLRVNACQGI-LRLRG--RPTVAFDQQGLVFAVAME----AG-------AIKLFDSRSYDKGPFDT   93 (235)
Q Consensus        28 ~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~~~----dg-------~v~i~d~~~~~~~~~~~   93 (235)
                      .++.|+.  .+..||..+++-... .....  ....+...++.+++.|+.    ++       .+..||..+.+..... 
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-   94 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP-   94 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS-
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC-
Confidence            3444543  378899887764331 11111  112344557888888873    12       2677887664421111 


Q ss_pred             EeecCCCcceeEEEEccCCCeEEEecCC-------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC--
Q 026679           94 FLVGGDTAEVCDIKFSNDGKSMLLTTTN-------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG--  164 (235)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  164 (235)
                       .+....... +++. -++..++.|+.+       ..+.+||..+.+....-....... -.++ ...++++++.|+.  
T Consensus        95 -~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~-~~~~~~iyv~GG~~~  169 (318)
T 2woz_A           95 -PLPSARCLF-GLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY-GHNV-ISHNGMIYCLGGKTD  169 (318)
T ss_dssp             -CBSSCBCSC-EEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEE-SCEE-EEETTEEEEECCEES
T ss_pred             -CCCcccccc-ceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccc-ccEE-EEECCEEEEEcCCCC
Confidence             111111111 1222 256667777653       348899998876554322221111 1112 2246777777764  


Q ss_pred             ----CCcEEEEEcCCCceeeeecCCCc-ceeEEEeecCCCEEEEcc-------cceEEeeCCCCC
Q 026679          165 ----DGTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS  217 (235)
Q Consensus       165 ----dg~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~  217 (235)
                          -..+.+||..+.+-...-..... .-.+++. -++.+++.|+       ..+.+||+++.+
T Consensus       170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence                23589999887653322111111 1112222 2566666665       347788887654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.01  E-value=0.056  Score=39.48  Aligned_cols=181  Identities=10%  Similarity=0.004  Sum_probs=91.3

Q ss_pred             eeEEEeccceEEEEecCcceeee-eeeccCCc--eEEEcCCCCEEEEEec-----C------CeEEEEeccCCCCCCcee
Q 026679           28 SFMSGSLDHSVRIWDLRVNACQG-ILRLRGRP--TVAFDQQGLVFAVAME-----A------GAIKLFDSRSYDKGPFDT   93 (235)
Q Consensus        28 ~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~--~~~~~~~~~~l~~~~~-----d------g~v~i~d~~~~~~~~~~~   93 (235)
                      +++.|+  ..+.+||..+++-.. .+..+...  ..+...++.+++.|+.     .      ..+..||..+.+..... 
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP-   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC-
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC-
Confidence            344555  468899998876332 11111111  2344457888888874     1      12677887765421110 


Q ss_pred             EeecCCCcceeEEEEccCCCeEEEecCC--------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-
Q 026679           94 FLVGGDTAEVCDIKFSNDGKSMLLTTTN--------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-  164 (235)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  164 (235)
                       .+....... +++. -++..++.|+.+        ..+.+||..+.+....-......  ....+...+++.++.|+. 
T Consensus        84 -~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~  158 (315)
T 4asc_A           84 -PLPSPRCLF-GLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV--YGHTVLSHMDLVYVIGGKG  158 (315)
T ss_dssp             -CBSSCEESC-EEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECCBC
T ss_pred             -CCCcchhce-eEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc--cceeEEEECCEEEEEeCCC
Confidence             011111111 1222 256666666632        45999999887654332222211  111222346677778776 


Q ss_pred             C-----CcEEEEEcCCCceeeeecCCCcc-eeEEEeecCCCEEEEcc-------cceEEeeCCCCC
Q 026679          165 D-----GTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAMFVAAS-------SVLSFWIPNPSS  217 (235)
Q Consensus       165 d-----g~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~  217 (235)
                      +     ..+.+||..+.+-...-...... -.++. .-++++++.|+       ..+.+||+++.+
T Consensus       159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            2     45899998776433221111111 11222 22666766665       247788887653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.99  E-value=0.062  Score=39.65  Aligned_cols=186  Identities=10%  Similarity=0.132  Sum_probs=95.3

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec----cCC--ceEEEcCCCCEEEEEecCCeEEEEeccCCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL----RGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYD   87 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----~~~--~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~   87 (235)
                      ...+.++.|.+++..++ ++.+|.|. ...+.++.=.....    ...  ..+.+++ +. +++++..+.+.. ....++
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence            35788999887666666 45567653 33333322111111    121  2366765 44 444556665443 222222


Q ss_pred             CCCceeEee-cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679           88 KGPFDTFLV-GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG  166 (235)
Q Consensus        88 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  166 (235)
                      .  ...... ......+..+.+.+++..++++ .++.|..- ...++.-.... ......+..+.+.|++.+++.+...+
T Consensus       110 t--W~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~-~~~~~~~~~~~~~~~~~~~~~g~~G~  184 (327)
T 2xbg_A          110 S--WSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALV-QEAIGVMRNLNRSPSGEYVAVSSRGS  184 (327)
T ss_dssp             S--CEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEE-CSCCCCEEEEEECTTSCEEEEETTSS
T ss_pred             C--ceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEee-cCCCcceEEEEEcCCCcEEEEECCCc
Confidence            1  111111 1123456777777777655554 45544321 12233222222 22334588899999998887775443


Q ss_pred             cEEEEEc--CCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEe
Q 026679          167 TLHAWNI--NTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFW  211 (235)
Q Consensus       167 ~i~v~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw  211 (235)
                      ..+-.|-  .+.+.+.  ......+..+.+.+++..++.+. +.+++.
T Consensus       185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s  230 (327)
T 2xbg_A          185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFS  230 (327)
T ss_dssp             EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEe
Confidence            3333342  2233332  23445788899999988877765 556555

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.94  E-value=0.17  Score=44.07  Aligned_cols=93  Identities=11%  Similarity=0.132  Sum_probs=60.2

Q ss_pred             cEEEEEcCCCceeeeeccCCCCCcceeeE---EeCC-CcEEEEeC----------CCCcEEEEEcCCCceeeee-cCCCc
Q 026679          123 NIYVLDAYGGEKRCGFSLEPSPNTNTEAT---FTPD-GQYVVSGS----------GDGTLHAWNINTRNEVACW-NGNIG  187 (235)
Q Consensus       123 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~---~~~~-~~~l~~~~----------~dg~i~v~d~~~~~~~~~~-~~~~~  187 (235)
                      .|++.|..+.+.+..+.+...+ .+.+++   |..+ ..+|++|+          ..|.|++|++.+++..... ....+
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE-~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNE-YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTE-EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEeCCCCeEEEEEeCCCCc-ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            4778888888877777776553 344444   3322 46888775          3578999999744332211 12356


Q ss_pred             ceeEEEeecCCCEEEEcccceEEeeCCCCC
Q 026679          188 VVACLKWAPRRAMFVAASSVLSFWIPNPSS  217 (235)
Q Consensus       188 ~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~  217 (235)
                      +|++++-- +|+++++.+..+++|++...+
T Consensus       887 ~v~al~~~-~g~Lla~ig~~l~vy~l~~~~  915 (1158)
T 3ei3_A          887 AVYSMVEF-NGKLLASINSTVRLYEWTTEK  915 (1158)
T ss_dssp             CEEEEEEE-TTEEEEEETTEEEEEEECTTS
T ss_pred             cCEEEeee-CCEEEEEcCCEEEEEECCCCc
Confidence            78887744 566666667889999997543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.49  E-value=0.33  Score=43.11  Aligned_cols=104  Identities=13%  Similarity=0.154  Sum_probs=58.8

Q ss_pred             eecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeec--C
Q 026679           22 MSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG--G   98 (235)
Q Consensus        22 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--~   98 (235)
                      .+|..+.+|.= ...++.|+|+++.+.++.+......+ ..|-....+-+++  +..|..|++.... .|...+...  -
T Consensus        73 MnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s-~P~k~fdR~~~L  148 (1630)
T 1xi4_A           73 MNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGES-QPVKMFDRHSSL  148 (1630)
T ss_pred             cCCCcceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc--CCeEEEeccCCCC-ccHHHHhcchhc
Confidence            46665555544 36789999999998888877755433 5555444333332  4579999996522 222111111  0


Q ss_pred             CCcceeEEEEccCCCeEEEec-------CCCcEEEEEc
Q 026679           99 DTAEVCDIKFSNDGKSMLLTT-------TNNNIYVLDA  129 (235)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~-------~d~~i~~~d~  129 (235)
                      ....|..-..+++.++++..+       -.|.+.+|..
T Consensus       149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~  186 (1630)
T 1xi4_A          149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV  186 (1630)
T ss_pred             ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeec
Confidence            124455555666666655432       2355666654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.25  E-value=0.089  Score=41.68  Aligned_cols=103  Identities=15%  Similarity=0.029  Sum_probs=65.4

Q ss_pred             cceeEEEEccCCCeEEEecC-CCcEEEEEcCCC------ce-----eeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679          101 AEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGG------EK-----RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL  168 (235)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~------~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  168 (235)
                      .....+..+|||+++++++. +.++.++|.+.-      +.     ...-..... -.....+|.++|.-..+-.-|..|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECCCCceEeeeeecceE
Confidence            34457889999999888776 888999998742      11     001111122 234678999999766777789999


Q ss_pred             EEEEcCCC----------ceeeeecCCCcceeEEE------eecCCCEEEEcc
Q 026679          169 HAWNINTR----------NEVACWNGNIGVVACLK------WAPRRAMFVAAS  205 (235)
Q Consensus       169 ~v~d~~~~----------~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~  205 (235)
                      .-|++...          ..+..+..|-.+ -.+.      -.|+|++|++..
T Consensus       402 vkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred             EEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence            99998643          233344434222 2222      246788888774

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.05  E-value=0.35  Score=37.22  Aligned_cols=161  Identities=11%  Similarity=0.131  Sum_probs=100.1

Q ss_pred             cceeEEEeecCCCeeEEEe-------ccceEEEEecCcceeeeeeeccCCceEEEcCCC-----CEEEEEecC---CeEE
Q 026679           15 ERVISLCMSPVNDSFMSGS-------LDHSVRIWDLRVNACQGILRLRGRPTVAFDQQG-----LVFAVAMEA---GAIK   79 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~-------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~d---g~v~   79 (235)
                      ..|..-..+++.++++..+       -.|.+.+|..+. +..+.+.+|...-..+-.+|     .+++.+...   +.++
T Consensus       151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh  229 (494)
T 1bpo_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  229 (494)
T ss_dssp             CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEE
T ss_pred             ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence            4566777788888876443       247788888754 34455555544333333332     245555443   7899


Q ss_pred             EEeccCC--CCCCceeEee------cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeE
Q 026679           80 LFDSRSY--DKGPFDTFLV------GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT  151 (235)
Q Consensus        80 i~d~~~~--~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~  151 (235)
                      +.++...  ...+......      ........++..++.-..++..+.-|.|++||+.++.++..-+.....  |...+
T Consensus       230 i~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~--iF~t~  307 (494)
T 1bpo_A          230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET--IFVTA  307 (494)
T ss_dssp             EEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEE
T ss_pred             EEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc--eEEec
Confidence            9998653  1111111111      112334556888888888999999999999999999998777665543  55555


Q ss_pred             EeCCCcEEEEeCCCCcEEEEEcCCCce
Q 026679          152 FTPDGQYVVSGSGDGTLHAWNINTRNE  178 (235)
Q Consensus       152 ~~~~~~~l~~~~~dg~i~v~d~~~~~~  178 (235)
                      .+....-++.....|.|.-..+.....
T Consensus       308 ~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          308 PHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             EETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             ccCCCCcEEEEccCceEEEEEEccccc
Confidence            555555566666788777666655443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.03  E-value=0.42  Score=37.99  Aligned_cols=181  Identities=10%  Similarity=0.119  Sum_probs=103.1

Q ss_pred             eEEEeccceEEEEecCcceeeeeeeccC-----------------------------CceEEEcC---CCCEEEEEec-C
Q 026679           29 FMSGSLDHSVRIWDLRVNACQGILRLRG-----------------------------RPTVAFDQ---QGLVFAVAME-A   75 (235)
Q Consensus        29 l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----------------------------~~~~~~~~---~~~~l~~~~~-d   75 (235)
                      |.||+..|.|+|+-+.+++.+..+..-.                             .+.+.+..   ||++|+.-.. +
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            7899999999999998888776654211                             11133322   5677777664 5


Q ss_pred             CeEEEEeccCCCCCCceeEeecCCCcceeEEEEc--cCCCeEEEecC-------CCcE------------EEEEcCCCce
Q 026679           76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS--NDGKSMLLTTT-------NNNI------------YVLDAYGGEK  134 (235)
Q Consensus        76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~-------d~~i------------~~~d~~~~~~  134 (235)
                      ..|...++...+.   ...........+..+.|.  |+..++++++.       ||..            ...|..+.+.
T Consensus       153 ~RvAri~l~~~~~---d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v  229 (638)
T 3sbq_A          153 SRVARIRLDIMKC---DKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEM  229 (638)
T ss_dssp             TEEEEEETTTTEE---EEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSE
T ss_pred             cceEEEECCcEee---ceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEE
Confidence            6777778777553   122233455667777776  67777777654       2221            1122222222


Q ss_pred             eeeeccCCCCCcceeeEEeCCCcEEEEeCCCC---------------cEEEEEcC-------------------------
Q 026679          135 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG---------------TLHAWNIN-------------------------  174 (235)
Q Consensus       135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~v~d~~-------------------------  174 (235)
                      ........   ....+...++|++.++.+.+.               .+.+++++                         
T Consensus       230 ~~Qv~v~g---nld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~  306 (638)
T 3sbq_A          230 AFQVIVDG---NLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGR  306 (638)
T ss_dssp             EEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECS
T ss_pred             EEEEEcCC---ChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccc
Confidence            22222221   133355677777776654221               25555542                         


Q ss_pred             C----CceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          175 T----RNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       175 ~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                      .    +..+..+-.-......+..+|||++++.++   .++.+++++.
T Consensus       307 ~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k  354 (638)
T 3sbq_A          307 KKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDK  354 (638)
T ss_dssp             CBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             cccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeeh
Confidence            2    111111111123456789999999999998   6699999873

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.65  E-value=1  Score=39.45  Aligned_cols=193  Identities=14%  Similarity=0.069  Sum_probs=101.9

Q ss_pred             ccceeEEEeecC------CCeeEEEec-cceEEEEecCcceeeeeeeccC--Cc-eEEEc--CCCCEEEEEecCCeEEEE
Q 026679           14 KERVISLCMSPV------NDSFMSGSL-DHSVRIWDLRVNACQGILRLRG--RP-TVAFD--QQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus        14 ~~~v~~~~~~~~------~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~--~~-~~~~~--~~~~~l~~~~~dg~v~i~   81 (235)
                      ...|.|+++.|.      +++++.|.+ |++++|+++.+.+.+.......  .+ .+.+.  ....+|.+|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999863      368899987 9999999998766554443322  21 12221  234578899999998777


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcc-eeeEEeCC--CcE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN-TEATFTPD--GQY  158 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i-~~~~~~~~--~~~  158 (235)
                      .+..............-...++.-..+...+..-+.+..+....+|.-. ++... ......  .+ ....|+..  ..-
T Consensus       633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~-s~l~~~--~v~~~~~F~se~~~~g  708 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVF-SNVNLK--EVNYMCPLNSDGYPDS  708 (1158)
T ss_dssp             EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEE-EEBSSS--CCCEEEEECCSSSTTE
T ss_pred             EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEE-eccChH--HhceEeccCcccCCCc
Confidence            6543221111111111113344444444444333333334444445433 32221 112111  12 22345332  223


Q ss_pred             EEEeCCCCcEEEEEcCCCcee--eeecCCCcceeEEEeecCCCEEEEcccceEEee
Q 026679          159 VVSGSGDGTLHAWNINTRNEV--ACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI  212 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~  212 (235)
                      ++..+ ++.++|..+.+.+..  ..+. -...+..++++|+.+.++.+...-..++
T Consensus       709 ~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~  762 (1158)
T 3ei3_A          709 LALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQD  762 (1158)
T ss_dssp             EEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEEC
T ss_pred             EEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccc
Confidence            44333 345999887654332  2222 3457899999998887776653333333

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.41  E-value=0.57  Score=34.95  Aligned_cols=68  Identities=9%  Similarity=0.061  Sum_probs=45.7

Q ss_pred             cceeeEEeC-------CCcEEEEeCCCCcEEEEEcCCCceeee--e-cCCCcceeEEEeecCCCEEEEcc-cceEEeeC
Q 026679          146 TNTEATFTP-------DGQYVVSGSGDGTLHAWNINTRNEVAC--W-NGNIGVVACLKWAPRRAMFVAAS-SVLSFWIP  213 (235)
Q Consensus       146 ~i~~~~~~~-------~~~~l~~~~~dg~i~v~d~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~  213 (235)
                      .+..+.|..       +|+++++....+.|...++..++....  + ......+..+++.|||.++++.. ..-+||.+
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri  350 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKV  350 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEEEE
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEEEE
Confidence            355677753       477777777788888888876543322  2 22235789999999999877654 55566665

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.31  E-value=0.71  Score=35.91  Aligned_cols=106  Identities=15%  Similarity=0.172  Sum_probs=54.4

Q ss_pred             eEEEcCCCC-EEEEEecCCeEEEEeccCCC-CCCceeE---eec----CCCcceeEEEEccC----CCeEEEecC--C--
Q 026679           59 TVAFDQQGL-VFAVAMEAGAIKLFDSRSYD-KGPFDTF---LVG----GDTAEVCDIKFSND----GKSMLLTTT--N--  121 (235)
Q Consensus        59 ~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~-~~~~~~~---~~~----~~~~~v~~~~~~~~----~~~l~~~~~--d--  121 (235)
                      .++|.|++. .++++...|.|++++..... .......   ...    ........++|+|+    +...++-+.  +  
T Consensus        18 ~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~   97 (463)
T 2wg3_C           18 GALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERW   97 (463)
T ss_dssp             EEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSS
T ss_pred             EEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCc
Confidence            378888875 45556677888888643221 1111110   000    11346778899885    333333221  1  


Q ss_pred             --------CcEEEEEcCCC----------ceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679          122 --------NNIYVLDAYGG----------EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus       122 --------~~i~~~d~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                              ..|.-|.+..+          +.+..............++|.|||.+.++.+.
T Consensus        98 ~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           98 AIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             ccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence                    14555665421          12222221122233678999999987776554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.03  E-value=0.06  Score=39.92  Aligned_cols=110  Identities=15%  Similarity=0.231  Sum_probs=65.7

Q ss_pred             CEEEEEecCCeEEEEeccCCCCCCceeEeecCC-CcceeEEEE--c-cCCCeEEEe-cCCCcEEEEEcCCCceeeeeccC
Q 026679           67 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKF--S-NDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLE  141 (235)
Q Consensus        67 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~--~-~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~  141 (235)
                      ..+++++.||.+.-+|..+++.    ....... ..++....-  . .++..++.. +.||.|+.++..+|.....+...
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~----~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~   86 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHI----IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR   86 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEE----EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcE----EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence            4688888899999888877654    2222211 011111100  0 123333333 58999999998887554333322


Q ss_pred             C--CCCcceeeEEe-----------CCCcEEEEeCCCCcEEEEEcCCCceeeeec
Q 026679          142 P--SPNTNTEATFT-----------PDGQYVVSGSGDGTLHAWNINTRNEVACWN  183 (235)
Q Consensus       142 ~--~~~~i~~~~~~-----------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  183 (235)
                      .  ...+   +...           ..+..+++|+.+|.+...|+++|+.+..+.
T Consensus        87 ~lv~~SP---~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           87 QLVSTSP---LHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             HHHTTCS---EEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             cceeccc---cccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            1  0011   2211           145678899999999999999999988775

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.88  E-value=1.4  Score=36.55  Aligned_cols=198  Identities=14%  Similarity=0.072  Sum_probs=108.7

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcce--eeeeeec-------cCCce--EEEcCCCCEEEEEecCCeEEEEec
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--CQGILRL-------RGRPT--VAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~-------~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      ..|.++.-..+|.+ ..|+.+| +..++..++.  ....+..       ....+  +.-..++.+ ..|+ ++-+..||.
T Consensus       324 ~~v~~i~~D~~g~l-WiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt-~~GL~~~~~  399 (758)
T 3ott_A          324 NQFYSLFRDSKGFY-WFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQL-WIAT-DGSINRYDY  399 (758)
T ss_dssp             CBEEEEEECTTCCE-EEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCE-EEEE-TTEEEEEET
T ss_pred             ceEEEEEEcCCCCE-EEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCE-EEEe-CCcHhhcCc
Confidence            45777777666654 4444555 5566654432  1111211       11123  444556654 4455 457888988


Q ss_pred             cCCCCCCceeEeecC-----CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC-----cee---eeecc--CCCCCcce
Q 026679           84 RSYDKGPFDTFLVGG-----DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-----EKR---CGFSL--EPSPNTNT  148 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-----~~~---~~~~~--~~~~~~i~  148 (235)
                      .+...   .......     ....|.++...++++ |..|+..+-+..+|..+.     ...   ..+..  .-....|.
T Consensus       400 ~~~~~---~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~  475 (758)
T 3ott_A          400 ATRQF---IHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFIN  475 (758)
T ss_dssp             TTTEE---EEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEE
T ss_pred             CCCcE---EEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceee
Confidence            76432   1111111     124577777777765 666776666888886421     111   11111  11123488


Q ss_pred             eeEEeCCCcEEE-EeCCCCcEEEEEcCCCceeeeecC---CCcceeEEEeecCCCEEEEcccceEEeeCCCCCCCCC
Q 026679          149 EATFTPDGQYVV-SGSGDGTLHAWNINTRNEVACWNG---NIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTD  221 (235)
Q Consensus       149 ~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~~~~~  221 (235)
                      ++...++|++-+ .++..| |..+|..+++.......   ....+.++....+|.+.++..+-+..++.+......+
T Consensus       476 ~i~~d~~g~lWi~~~t~~G-l~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~  551 (758)
T 3ott_A          476 QIIPDNEGNVWVLLYNNKG-IDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGGVMRINPKDESQQSI  551 (758)
T ss_dssp             EEEECTTSCEEEEETTCSS-EEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEETTEEEEECC--CCCCBC
T ss_pred             eEEEcCCCCEEEEccCCCC-cEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEecCceEEEecCCCceEEe
Confidence            888888888665 355544 88899876654332111   1245778888888888877666688888776654443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=94.75  E-value=0.97  Score=34.11  Aligned_cols=169  Identities=11%  Similarity=0.155  Sum_probs=92.5

Q ss_pred             eEEEEecCcc--eeeeeeeccCC--------ceEEEc---CC----CCEEEEEe-cCCeEEEEeccCCCCCCce------
Q 026679           37 SVRIWDLRVN--ACQGILRLRGR--------PTVAFD---QQ----GLVFAVAM-EAGAIKLFDSRSYDKGPFD------   92 (235)
Q Consensus        37 ~i~vwd~~~~--~~~~~~~~~~~--------~~~~~~---~~----~~~l~~~~-~dg~v~i~d~~~~~~~~~~------   92 (235)
                      .|.+||+.++  +.++.+..+..        ..+++.   |.    +.++..+. ..+-+.++|+.+++.....      
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5889999999  88888876431        115555   22    33444444 4678999998875531111      


Q ss_pred             ----eEeecCC----CcceeEEEEccC----CCeEEEecCCC-cEEEEE---cCCCce---eeeeccCCCCCcceeeEEe
Q 026679           93 ----TFLVGGD----TAEVCDIKFSND----GKSMLLTTTNN-NIYVLD---AYGGEK---RCGFSLEPSPNTNTEATFT  153 (235)
Q Consensus        93 ----~~~~~~~----~~~v~~~~~~~~----~~~l~~~~~d~-~i~~~d---~~~~~~---~~~~~~~~~~~~i~~~~~~  153 (235)
                          .+...+.    ...+..++++|+    ++.|....-.+ .++-..   ++....   ++.+-..+....-..++++
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D  283 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD  283 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence                1111111    246778899987    66666655443 233322   222221   1111111111223345675


Q ss_pred             -CCCcEEEEeCCCCcEEEEEcCC-C---ceeeeec-C-CCcceeEEEeecCCCEEEEcc
Q 026679          154 -PDGQYVVSGSGDGTLHAWNINT-R---NEVACWN-G-NIGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       154 -~~~~~l~~~~~dg~i~v~d~~~-~---~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~  205 (235)
                       .+|.++++--....|..|+..+ .   +....+. . .-..+..+.+.++|.+.+.++
T Consensus       284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred             CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence             5788888888888999999865 1   1122221 1 223467777777776655554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.02  E-value=2.3  Score=38.13  Aligned_cols=169  Identities=9%  Similarity=0.139  Sum_probs=93.3

Q ss_pred             hhhhhhccc----ccceeEEEeecCCCeeEEEe-------ccceEEEEecCcceeeeeeeccCCceEEEc----C-CCCE
Q 026679            5 RILRYFKGH----KERVISLCMSPVNDSFMSGS-------LDHSVRIWDLRVNACQGILRLRGRPTVAFD----Q-QGLV   68 (235)
Q Consensus         5 ~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~-------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~----~-~~~~   68 (235)
                      .+++.|..|    ...|..-..+++.++++..|       -.|.+.+|..+.+ ..+.+.+|...-..+-    + ...+
T Consensus       137 ~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l  215 (1630)
T 1xi4_A          137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTL  215 (1630)
T ss_pred             ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceE
Confidence            455556555    35677777788888876433       3477888887543 3334444433221111    1 1223


Q ss_pred             EEEEec---CCeEEEEeccCC-CC-CCceeE----ee--cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee
Q 026679           69 FAVAME---AGAIKLFDSRSY-DK-GPFDTF----LV--GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG  137 (235)
Q Consensus        69 l~~~~~---dg~v~i~d~~~~-~~-~~~~~~----~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  137 (235)
                      ++.+..   .+.+++-++... .. ++....    .+  ........++..++.-..+...+.-|.+.+||+.++..+..
T Consensus       216 ~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             EEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence            333332   268888888553 11 111100    01  11123344677888777888899999999999999988765


Q ss_pred             eccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC
Q 026679          138 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR  176 (235)
Q Consensus       138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  176 (235)
                      -.....+  |...+.++...-++.....|.|.-..+...
T Consensus       296 ~ris~~~--iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          296 NRISGET--IFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             ccccCCc--eEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence            5544432  433333333333444446666555555443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.89  E-value=1.2  Score=31.95  Aligned_cols=183  Identities=10%  Similarity=0.041  Sum_probs=87.1

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEe
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL   95 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~   95 (235)
                      .|..++...+ ..++. . ||.|..|-....-.+..-..-...+..+.......+.-. +|.+..|-...........  
T Consensus        64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~--  137 (282)
T 3qhy_B           64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA--  137 (282)
T ss_dssp             CCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG--
T ss_pred             CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc--
Confidence            4555554422 12222 3 777777765432111110000112333333333344444 8888888665432211111  


Q ss_pred             ecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679           96 VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT  175 (235)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  175 (235)
                        .....|..++.-.+  +.++-. ||.|+.|-......+.. +.. ....|..++...+. .++.  .||.++.|-...
T Consensus       138 --~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~-p~~-~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~  207 (282)
T 3qhy_B          138 --EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTV-PAE-AQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNR  207 (282)
T ss_dssp             --GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSC-CGG-GGSSEEEEEECSSE-EEEE--ETTEEEEEECCT
T ss_pred             --cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCC-cee-cCCCeEEEEecCCE-EEEE--ECCeEEEEECCC
Confidence              11234665554432  233333 78899887654322211 000 11336555554432 2333  589999997654


Q ss_pred             CceeeeecCCCcceeEEEeecCCCEEEEcccceEEeeCCC
Q 026679          176 RNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNP  215 (235)
Q Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~  215 (235)
                      .-.+..-......|..++........++ ++.+..|-.+.
T Consensus       208 ~gqlg~p~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~  246 (282)
T 3qhy_B          208 YKQTTVPTEALSGVSAIASGEWYSLALK-NGKVIAWGSSR  246 (282)
T ss_dssp             TSTTCCCGGGGSSCCEEEECSSCEEEEE-TTEEEEESTTC
T ss_pred             CCCCCCCcccCCCceEEEcCCCEEEEEE-CCEEEEecCCC
Confidence            3222211112235777776666666666 77788886654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.75  E-value=1.9  Score=33.57  Aligned_cols=106  Identities=9%  Similarity=-0.013  Sum_probs=56.8

Q ss_pred             cceeEEEeecCCC-eeEEEeccceEEEEecCcce---eeeeee---c-------cCCc-eEEEcCC----CCEEEEEecC
Q 026679           15 ERVISLCMSPVND-SFMSGSLDHSVRIWDLRVNA---CQGILR---L-------RGRP-TVAFDQQ----GLVFAVAMEA   75 (235)
Q Consensus        15 ~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~---~~~~~~---~-------~~~~-~~~~~~~----~~~l~~~~~d   75 (235)
                      ..-+.|+|.|+|. .|+.+...|.|++++.....   .+..+.   .       .... -++++|+    +.+.++-+.+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3457899999986 56666778999999753221   111111   0       1111 2899985    4444443321


Q ss_pred             ------------CeEEEEeccCCCCC------CceeEee--cCCCcceeEEEEccCCCeEEEecC
Q 026679           76 ------------GAIKLFDSRSYDKG------PFDTFLV--GGDTAEVCDIKFSNDGKSMLLTTT  120 (235)
Q Consensus        76 ------------g~v~i~d~~~~~~~------~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~  120 (235)
                                  ..|.-|.+......      ....+..  .........|+|.|||.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence                        13444665432110      1111111  122344678999999987776554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.52  E-value=1.1  Score=38.36  Aligned_cols=38  Identities=24%  Similarity=0.421  Sum_probs=32.9

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR   53 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~   53 (235)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            56777778888899999999999999999999887764

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=91.28  E-value=3  Score=29.92  Aligned_cols=183  Identities=9%  Similarity=-0.031  Sum_probs=90.0

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEe
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL   95 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~   95 (235)
                      .|..++...  .+.+.-. ||.|+.|-....-.+..-......+..+.......+.-. ||.+..|-...........  
T Consensus        25 ~i~~ia~G~--~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~--   98 (282)
T 3qhy_B           25 GVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPA--   98 (282)
T ss_dssp             SCCEEEECS--SEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCG--
T ss_pred             CCcEEEeCC--CeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCc--
Confidence            566666543  3333335 899999976543221110011112222222222222224 8999998765432211111  


Q ss_pred             ecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679           96 VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT  175 (235)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  175 (235)
                        .....|..++...+  +.++.. +|.|+.|-......+.. .. .....|..++...+...+  -. ||.++.|-...
T Consensus        99 --~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~-~~-~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~  168 (282)
T 3qhy_B           99 --EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV-PA-EAQSGVTALDGGVYTALA--VK-NGGVIAWGDNY  168 (282)
T ss_dssp             --GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC-CG-GGGSSEEEEEECSSEEEE--EE-TTEEEEEECCT
T ss_pred             --ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC-Cc-cCCCCeEEEEcccCEEEE--EE-CCEEEEecCCC
Confidence              11235666665543  444445 99999997654322211 10 111336555554333222  23 68899997654


Q ss_pred             CceeeeecCCCcceeEEEeecCCCEEEEcccceEEeeCCC
Q 026679          176 RNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNP  215 (235)
Q Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~  215 (235)
                      ...+.........|..++...+...++ .++.+..|-.+.
T Consensus       169 ~gqlg~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~  207 (282)
T 3qhy_B          169 FGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNR  207 (282)
T ss_dssp             TSTTSCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCT
T ss_pred             CCCCCCceecCCCeEEEEecCCEEEEE-ECCeEEEEECCC
Confidence            322221111234577776655544444 457788886543

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=91.01  E-value=4  Score=30.81  Aligned_cols=186  Identities=11%  Similarity=0.100  Sum_probs=92.5

Q ss_pred             CCeeEEEeccceEEEEecCcc-e----------eeeeeec-cCC--ceEEEcCCCCEEEEEecCCeEEEEeccCCCC---
Q 026679           26 NDSFMSGSLDHSVRIWDLRVN-A----------CQGILRL-RGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK---   88 (235)
Q Consensus        26 ~~~l~s~~~d~~i~vwd~~~~-~----------~~~~~~~-~~~--~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---   88 (235)
                      ....+....||.|..|-.... +          ....+.. ...  ..++++......++-..+|.|..|-......   
T Consensus        62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~  141 (389)
T 3kci_A           62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH  141 (389)
T ss_dssp             TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred             CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence            455566677899999964321 0          0111111 111  2256666667777778899999996433110   


Q ss_pred             ---CCcee-EeecC-CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce-----------eeeeccCCCCCcceeeEE
Q 026679           89 ---GPFDT-FLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-----------RCGFSLEPSPNTNTEATF  152 (235)
Q Consensus        89 ---~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-----------~~~~~~~~~~~~i~~~~~  152 (235)
                         ..... ..... ....|..++.  ...+.++...+|.|+.|-......           ...... .....+..++.
T Consensus       142 g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~-~~~~~v~~ia~  218 (389)
T 3kci_A          142 GNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA-LQGHRVVDIAC  218 (389)
T ss_dssp             SSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTSCEEEEEE
T ss_pred             CCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecc-cCCCeEEEEEE
Confidence               00001 11111 1124544444  345566677899999997532110           000110 11123555554


Q ss_pred             eCCCcEEEEeCCCCcEEEEEcCCCce-----------eeeecC-CCcceeEEEeecCCCEEEEcccceEEeeCC
Q 026679          153 TPDGQYVVSGSGDGTLHAWNINTRNE-----------VACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIPN  214 (235)
Q Consensus       153 ~~~~~~l~~~~~dg~i~v~d~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~  214 (235)
                      .....+.++-..||.|+.|-....-.           ...+.. ....|..++......+.++.++.+..|-.+
T Consensus       219 G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n  292 (389)
T 3kci_A          219 GSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKG  292 (389)
T ss_dssp             CCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             cCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCC
Confidence            43334555666789999996532111           111111 112466666555544555555778887553

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.75  E-value=1.7  Score=38.11  Aligned_cols=38  Identities=24%  Similarity=0.116  Sum_probs=31.7

Q ss_pred             CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeee
Q 026679          145 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW  182 (235)
Q Consensus       145 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  182 (235)
                      ..+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus       238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            34556677788899999999999999999999887664

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=87.98  E-value=2.4  Score=34.10  Aligned_cols=58  Identities=14%  Similarity=0.159  Sum_probs=41.6

Q ss_pred             ceeeEEeCCCcEEEEeCCC------------CcEEEEEcCCCceeeeecCC-CcceeEEEeecCCCEEEEc
Q 026679          147 NTEATFTPDGQYVVSGSGD------------GTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAA  204 (235)
Q Consensus       147 i~~~~~~~~~~~l~~~~~d------------g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~  204 (235)
                      .-.|+|+|.|++++.-..+            ..+.+.+..+++....+.++ ...++.++|+||++.|...
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            3558999999977764432            24566676677765555544 4689999999999988776

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.37  E-value=17  Score=32.05  Aligned_cols=39  Identities=13%  Similarity=0.167  Sum_probs=31.8

Q ss_pred             ceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc
Q 026679          102 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL  140 (235)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  140 (235)
                      .+.+++..++..++++-+.|+++++|++.+++++....+
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL  277 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  277 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence            344556667788999999999999999999998877654

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=86.22  E-value=13  Score=30.75  Aligned_cols=193  Identities=9%  Similarity=0.024  Sum_probs=99.7

Q ss_pred             eeEEE-eecCCCeeEE-Eec----cceEEEEecCcceeee-eeeccC-C--------ceEEEcCCCCEEEEEe-------
Q 026679           17 VISLC-MSPVNDSFMS-GSL----DHSVRIWDLRVNACQG-ILRLRG-R--------PTVAFDQQGLVFAVAM-------   73 (235)
Q Consensus        17 v~~~~-~~~~~~~l~s-~~~----d~~i~vwd~~~~~~~~-~~~~~~-~--------~~~~~~~~~~~l~~~~-------   73 (235)
                      ...+. ++|++++++. -|.    -..++++|+.+++.+. .+.... .        ..++|..++..+++..       
T Consensus       131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred             EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence            34455 8899877553 333    3469999999988664 222111 1        3357764444444321       


Q ss_pred             ---cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCe-----EEEec---CCCcEEEEEcCC--Cceeeeecc
Q 026679           74 ---EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS-----MLLTT---TNNNIYVLDAYG--GEKRCGFSL  140 (235)
Q Consensus        74 ---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~---~d~~i~~~d~~~--~~~~~~~~~  140 (235)
                         ....|+.|.+-+........+..... ..-.....++++++     +++.+   ....+++.|...  ++.. .+..
T Consensus       211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~  288 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIEKAKKLFEVPKE-YIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINM  288 (711)
T ss_dssp             TTSSBCEEEEEETTSCGGGCEEEEECCTT-SCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCS
T ss_pred             cCCCCCEEEEEECCCChHHCeEEeccCCC-ceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-Eeec
Confidence               12467888776654322223322222 22234455666663     33332   234567777653  3322 2222


Q ss_pred             CCCCCcceeeEEeCCCcEEEEeC----------CCCcEEEEEcCCCc-------eeee-ec-CCCcceeEEEeecCCCEE
Q 026679          141 EPSPNTNTEATFTPDGQYVVSGS----------GDGTLHAWNINTRN-------EVAC-WN-GNIGVVACLKWAPRRAMF  201 (235)
Q Consensus       141 ~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~v~d~~~~~-------~~~~-~~-~~~~~v~~~~~~~~~~~l  201 (235)
                      ...    ..+..+.++.+++...          ..+.|...|+.++.       .... +. .....+..+.|..+ .++
T Consensus       289 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~  363 (711)
T 4hvt_A          289 PSD----ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF  363 (711)
T ss_dssp             CTT----CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred             CCc----ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence            221    1133455666666432          36779999987642       1222 22 23446788888876 344


Q ss_pred             EEcc----cceEEeeCCCC
Q 026679          202 VAAS----SVLSFWIPNPS  216 (235)
Q Consensus       202 ~~~~----~~i~iw~~~~~  216 (235)
                      ++..    ..+.++++.++
T Consensus       364 ~~~~~~~~~~l~~~~~~~g  382 (711)
T 4hvt_A          364 LATYDNVVAKVVTFTLENE  382 (711)
T ss_dssp             EEEEETTEEEEEEECEETT
T ss_pred             EEEEECCEEEEEEEECCCC
Confidence            4443    34778877544

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=85.38  E-value=9.2  Score=28.18  Aligned_cols=161  Identities=9%  Similarity=0.028  Sum_probs=90.4

Q ss_pred             ccceeEEEeec---CCCeeEEEeccceEEEEecCcceee-----eeeecc-CCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679           14 KERVISLCMSP---VNDSFMSGSLDHSVRIWDLRVNACQ-----GILRLR-GRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus        14 ~~~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~-----~~~~~~-~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      ...|.++..-+   +...++..+.+|.++--.+......     ..+... ....  +........++..+..|.+..+.
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~  173 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFS  173 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence            34555554433   4678999999999998887653221     111111 1222  33334556788888899988887


Q ss_pred             cc--CCCCC-----CceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC-------ceeeeeccCCCCCcce
Q 026679           83 SR--SYDKG-----PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-------EKRCGFSLEPSPNTNT  148 (235)
Q Consensus        83 ~~--~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~~i~  148 (235)
                      ..  .-...     ......+. ....|.++...+++..++..+..|.++.-.+..-       +-+..+.+......+.
T Consensus       174 ~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv  252 (327)
T 3uc1_A          174 ATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV  252 (327)
T ss_dssp             CCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred             CcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence            76  32110     01112222 2345666666566678999999999988876321       2223333332223344


Q ss_pred             eeEEeCCCcEEEEeCCCCcEEEEEcCC
Q 026679          149 EATFTPDGQYVVSGSGDGTLHAWNINT  175 (235)
Q Consensus       149 ~~~~~~~~~~l~~~~~dg~i~v~d~~~  175 (235)
                      .+....+...++..+.+|.+.-++...
T Consensus       253 ~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          253 GALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             EEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             EEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            444444445666666777777776643

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=85.09  E-value=4.9  Score=32.37  Aligned_cols=59  Identities=24%  Similarity=0.294  Sum_probs=41.1

Q ss_pred             eeEEEEccCCCeEEEecCC------------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679          103 VCDIKFSNDGKSMLLTTTN------------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus       103 v~~~~~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      .-.|.|+|.|++++.-..+            ..+.+.+..+++....+..+ ....++.++|+||++.|++.
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence            4578999999865554322            24666777777766555543 44679999999999988765

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=84.79  E-value=9.5  Score=27.84  Aligned_cols=188  Identities=12%  Similarity=0.034  Sum_probs=99.6

Q ss_pred             cCCCeeEEEeccceEEEEecCcceeee-------ee--eccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCCC----
Q 026679           24 PVNDSFMSGSLDHSVRIWDLRVNACQG-------IL--RLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKG----   89 (235)
Q Consensus        24 ~~~~~l~s~~~d~~i~vwd~~~~~~~~-------~~--~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~----   89 (235)
                      ++...+++.+.+|.|+--.+...+...       .+  +...... +........++..+..|.++-+....-...    
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~   85 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS   85 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence            456788899999999987765432211       11  1111111 233334556777788888877765432110    


Q ss_pred             ---Cc-eeEeecCCCcceeEEEEcc---CCCeEEEecCCCcEEEEEcCCC-----ceeeeeccCCCCCcceeeEEeCCCc
Q 026679           90 ---PF-DTFLVGGDTAEVCDIKFSN---DGKSMLLTTTNNNIYVLDAYGG-----EKRCGFSLEPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        90 ---~~-~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~  157 (235)
                         +. ....+.. ...+..+...+   +..+++..+..|.++...+..-     .-...+.+.. ...+..+....+..
T Consensus        86 ~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~  163 (312)
T 1suu_A           86 KGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE  163 (312)
T ss_dssp             --CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred             CCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence               00 0111222 23344443332   4567888999999998887421     2222334443 24455555555566


Q ss_pred             EEEEeCCCCcEEEEEcCCCc---------eeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          158 YVVSGSGDGTLHAWNINTRN---------EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      .++..+.+|.+..+....-.         ....+.. ...|..+..-+++..++..+  |..+...++
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~  230 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMS  230 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence            78888899998888875321         1222222 34455555444444343333  666666553

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=84.60  E-value=5.5  Score=32.88  Aligned_cols=29  Identities=10%  Similarity=0.395  Sum_probs=25.2

Q ss_pred             CCcEEEEeCCCCcEEEEEcCCCceeeeec
Q 026679          155 DGQYVVSGSGDGTLHAWNINTRNEVACWN  183 (235)
Q Consensus       155 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  183 (235)
                      +..++++-+.|..+|+|++++++++.+..
T Consensus       230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~D  258 (729)
T 3f7f_A          230 HERYLIVLTQNCHLKIWDLTSFTLIQDYD  258 (729)
T ss_dssp             TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence            57799999999999999999998776653

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=83.91  E-value=7  Score=31.37  Aligned_cols=60  Identities=12%  Similarity=0.138  Sum_probs=42.3

Q ss_pred             cceeeEEeCCCcEEEEeCC------------CCcEEEEEcCCCceeeeecCC-CcceeEEEeecCCCEEEEcc
Q 026679          146 TNTEATFTPDGQYVVSGSG------------DGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAAS  205 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~------------dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~  205 (235)
                      ....+.|+++|.+.+....            ...+..++..+++....+... ...++.++|+||++.|.++-
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            3567899999987773321            225777777777765555433 35789999999999988774

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=83.41  E-value=2.4  Score=34.88  Aligned_cols=37  Identities=11%  Similarity=0.144  Sum_probs=30.1

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL   54 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~   54 (235)
                      .|.++.+  +..++++-+.|.++|+||+++++++.....
T Consensus       223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            4555544  367999999999999999999998877765

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=83.17  E-value=9  Score=30.75  Aligned_cols=60  Identities=27%  Similarity=0.344  Sum_probs=40.9

Q ss_pred             ceeEEEEccCCCeEEEecC------------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679          102 EVCDIKFSNDGKSMLLTTT------------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      ....+.|.++|.+.+....            ...+..++..+++....+.. .....++.++|+||++.|++.
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECCCCCEEEEE
Confidence            4567999999986663321            12577777777776554432 222458999999999988765

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.07  E-value=26  Score=30.19  Aligned_cols=39  Identities=13%  Similarity=0.167  Sum_probs=33.0

Q ss_pred             ceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc
Q 026679          102 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL  140 (235)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  140 (235)
                      .+.+++..++..++++-+.|+++++|++.+++++....+
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            456677777888999999999999999999998876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.003
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.004
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 2e-16
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 6/162 (3%)

Query: 13  HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFA 70
           H   V+SL ++P    F+SG+ D S ++WD+R   C+            + F   G  FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242

Query: 71  VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 130
              +    +LFD R+  +    +         +  + FS  G+ +L    + N  V DA 
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSH--DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300

Query: 131 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 172
             ++     L    N  +    T DG  V +GS D  L  WN
Sbjct: 301 KADRAG--VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.9 bits (133), Expect = 7e-10
 Identities = 31/204 (15%), Positives = 68/204 (33%), Gaps = 5/204 (2%)

Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAF 62
           R  R  +GH  ++ ++     +   +S S D  + IWD         + LR     T A+
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
              G   A         +++ ++ +     +  + G T  +   +F +D + +  +    
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 182
                       +   +           +  PD +  VSG+ D +   W++        +
Sbjct: 166 CALWDIET---GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

Query: 183 NGNIGVVACLKWAPRRAMFVAASS 206
            G+   +  + + P    F   S 
Sbjct: 223 TGHESDINAICFFPNGNAFATGSD 246

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 3   DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWD 42
                    GH  RV  L ++    +  +GS D  ++IW+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-- 58
                +          + S+  S      ++G  D +  +WD       G+L        
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316

Query: 59  TVAFDQQGLVFAVAMEAGAIKLFD 82
            +     G+  A       +K+++
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 16/67 (23%), Positives = 23/67 (34%)

Query: 152 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 211
           +  D + +VS S DG L  W+  T N+V         V    +AP               
Sbjct: 63  WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122

Query: 212 IPNPSSN 218
           I N  + 
Sbjct: 123 IYNLKTR 129

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (166), Expect = 3e-14
 Identities = 37/213 (17%), Positives = 66/213 (30%), Gaps = 28/213 (13%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
           +     ++ F GH+E V  +  +       S S D +VR+W +    C+  LR       
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
                                        P  ++    +       K    G  +L  + 
Sbjct: 190 CISWA------------------------PESSYSSISEATGSETKKSGKPGPFLLSGSR 225

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           +  I + D   G   C  +L    N      F   G++++S + D TL  W+   +  + 
Sbjct: 226 DKTIKMWDVSTG--MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 283

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASS--VLSFW 211
             N +   V  L +       V  S    +  W
Sbjct: 284 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.8 bits (164), Expect = 5e-14
 Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 4/222 (1%)

Query: 10  FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVF 69
             GH+  V  +   PV    +S S D ++++WD           L+G      D      
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--ERTLKGHTDSVQDISFDHS 70

Query: 70  AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 129
              + + +  +       +G      + G    V  +    +G  ++  + +  I +   
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM--W 128

Query: 130 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV 189
                 C  +               DG  + S S D T+  W + T+   A    +  VV
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 190 ACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDESTDPQATVK 231
            C+ WAP  +    + +  S    +        S     T+K
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 8e-09
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-- 58
           +     L    GH   V  +         +S + D ++R+WD +   C   L        
Sbjct: 234 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 293

Query: 59  TVAFDQQGLVFAVAMEAGAIKLFD 82
           ++ F +             +K+++
Sbjct: 294 SLDFHKTAPYVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 1e-11
 Identities = 47/234 (20%), Positives = 91/234 (38%), Gaps = 23/234 (9%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--RP 58
           + + +I+   +GH++ + SL   P  D  +SGS D +VRIWDLR   C   L +      
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209

Query: 59  TVAFDQQGLVFAVAMEAGAIKLFDSRS---YDKGPFDTFLVGGDTAEVCDIKFSNDGKSM 115
                  G   A      A++++DS +    ++   +     G    V  + F+ DG+S+
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269

Query: 116 LLTTTNNNIYVLDAYGGEKR----------CGFSLEPSPNTNTEATFTPDGQYVVSGSGD 165
           +  + + ++ + +      +          C  +     +       T + +Y++SGS D
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329

Query: 166 GTLHAWNINTRNEVACWNGNIGVVACLKWA------PRRAMFVAASS--VLSFW 211
             +  W+  + N +    G+   V  +  A      P   +F   S       W
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 2e-11
 Identities = 25/174 (14%), Positives = 50/174 (28%), Gaps = 21/174 (12%)

Query: 21  CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP---------TVAFDQQGLVFAV 71
                     +GSLD +VR+WD         L               +V F + G     
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 72  AMEAGAIKLFDSRSYDKGPFDTFLVGG--------DTAEVCDIKFSNDGKSMLLTTTNNN 123
                ++KL++ ++ +          G            V  +  + + + +L  + +  
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 124 IYVLDAYGGEKRCGFSLEPSPNT----NTEATFTPDGQYVVSGSGDGTLHAWNI 173
           +   D   G          +          ++  P+     +GSGD     W  
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 26/223 (11%)

Query: 7   LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFD--- 63
           L     H   V  +  S   +   +G  + + +++ +   +    L          +   
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113

Query: 64  ------QQGLVFAVA-------MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 110
                     + +V        +  GA          +      ++ G   ++  + +  
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173

Query: 111 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA 170
            G  ++  + +  + + D   G+     S+E    T        DG+Y+ +GS D  +  
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA--VSPGDGKYIAAGSLDRAVRV 231

Query: 171 WNINT-------RNEVACWNGNIGVVACLKWAPRRAMFVAASS 206
           W+  T        +E     G+   V  + +       V+ S 
Sbjct: 232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 1   MYDNRILRYFKGHKERVISLC------MSPVNDSFMSGSLDHSVRIWDLR 44
                 L   +GH+  VIS+       + P  + F +GS D   RIW  +
Sbjct: 337 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 8e-11
 Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 12/178 (6%)

Query: 4   NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFD 63
              L   +GH  RV    +       +SGSLD S+R+WD+    C   L      T   +
Sbjct: 167 ETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224

Query: 64  QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN 123
            +  +         +K++D ++             +  +        +   ++ ++ +  
Sbjct: 225 LKDNILVSGNADSTVKIWDIKTGQCLQTLQG---PNKHQSAVTCLQFNKNFVITSSDDGT 281

Query: 124 IYVLDAYGGEKRCGFSLEPSPNTNTEAT---FTPDGQYVVSGSGDGT----LHAWNIN 174
           + + D   GE         S  +         +        GS +GT    L   + +
Sbjct: 282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 1e-09
 Identities = 36/237 (15%), Positives = 77/237 (32%), Gaps = 31/237 (13%)

Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR----------- 53
           +  +  KGH + VI+ C+    +  +SGS D+++++W      C   L            
Sbjct: 7   KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65

Query: 54  ---LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 110
              +    +     +            +    S        +  +V G       +    
Sbjct: 66  RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 125

Query: 111 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS----------------PNTNTEATFTP 154
            G+ + +   +        Y G +    + +                   +TN   +   
Sbjct: 126 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 185

Query: 155 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 211
           DG +VVSGS D ++  W++ T N +    G+  + + ++      +   A S +  W
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 8e-08
 Identities = 28/191 (14%), Positives = 71/191 (37%), Gaps = 12/191 (6%)

Query: 21  CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKL 80
           C+       +SG+ D  V++WD     C   L+       +    G+         +I++
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV 201

Query: 81  FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL 140
           +D  + +     T    G  +    ++  ++   +L++   ++   +      +      
Sbjct: 202 WDVETGNCIHTLT----GHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQ 254

Query: 141 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-----GNIGVVACLKWA 195
            P+ + +       +  +V++ S DGT+  W++ T   +         G+ GVV  ++ +
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 196 PRRAMFVAASS 206
             + +    S 
Sbjct: 315 NTKLVCAVGSR 325

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 6e-05
 Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 10/206 (4%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 60
                       +       CM       +SGS D ++R+WD+    C  +L        
Sbjct: 82  WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141

Query: 61  AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 120
                G           +K++D         +T L               DG  ++  + 
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPE------TETCLHTLQGHTNRVYSLQFDGIHVVSGSL 195

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           + +I V D     +        + + +  +        +VSG+ D T+  W+I T   + 
Sbjct: 196 DTSIRVWDV----ETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 251

Query: 181 CWNGNIGVVACLKWAPRRAMFVAASS 206
              G     + +        FV  SS
Sbjct: 252 TLQGPNKHQSAVTCLQFNKNFVITSS 277

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.6 bits (124), Expect = 9e-09
 Identities = 14/195 (7%), Positives = 38/195 (19%), Gaps = 18/195 (9%)

Query: 3   DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR----- 57
           + R +           +      + +    S        D  V      +  +       
Sbjct: 167 EGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226

Query: 58  ------PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSN 110
                   +                  K     + D G +   +                
Sbjct: 227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE 286

Query: 111 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA 170
                        +   D    +      +    N  T+   + D + V+    DG ++ 
Sbjct: 287 FAAYYQGAPEKGVLLKYDVKTRK------VTEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340

Query: 171 WNINTRNEVACWNGN 185
           + +    +      +
Sbjct: 341 FPLEKPEDERTVETD 355

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 11/86 (12%), Positives = 19/86 (22%), Gaps = 6/86 (6%)

Query: 108 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG- 166
           FS     ++   +    ++ D  G          P P          D +          
Sbjct: 10  FSPLDGDLIAFVSRGQAFIQDVSGTYVL----KVPEPLRIRYVRRGGDTKVAFIHGTREG 65

Query: 167 -TLHAWNINTRNEVACWNGNIGVVAC 191
             L  ++  T            V A 
Sbjct: 66  DFLGIYDYRTGKAEKFEENLGNVFAM 91

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 21/203 (10%), Positives = 47/203 (23%), Gaps = 6/203 (2%)

Query: 12  GHKERVISLCMSPVNDSFMSGSLDH--SVRIWDLRVNACQ----GILRLRGRPTVAFDQQ 65
               R+  +                   + I+D R    +     +  +         + 
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99

Query: 66  GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 125
            +V     E   + L   +          ++   T        +         T    + 
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 126 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 185
            +  Y  E R  F+     + +    F  D + +   S      + +    N        
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219

Query: 186 IGVVACLKWAPRRAMFVAASSVL 208
             V+  +  +P     V  S   
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTS 242

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.2 bits (123), Expect = 1e-08
 Identities = 11/81 (13%), Positives = 28/81 (34%)

Query: 103 VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 162
           +    ++ D   + +   N+ +++ +  G +      L+      T   + PD   +V+ 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 163 SGDGTLHAWNINTRNEVACWN 183
             D   + W +  R       
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLV 90

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.4 bits (121), Expect = 2e-08
 Identities = 22/219 (10%), Positives = 49/219 (22%), Gaps = 4/219 (1%)

Query: 9   YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP----TVAFDQ 64
           Y     E +     +           +H V I++   N    +  L+        V +  
Sbjct: 2   YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

Query: 65  QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 124
                          ++  +     P    L     A       +    ++   +   +I
Sbjct: 62  DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

Query: 125 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG 184
              +       C    +P  +T     + P+   + +GS D     ++   +        
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181

Query: 185 NIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDES 223
                             +   V         S     S
Sbjct: 182 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 220

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 28/220 (12%), Positives = 64/220 (29%), Gaps = 20/220 (9%)

Query: 7   LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGI----LRLRGRPTVAF 62
           +   K H  +V  +  +P ++  ++   D +  +W L+    +         R    V +
Sbjct: 44  VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 103

Query: 63  DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 122
                 FAV   +  I +      +       +     + V  + +  +   +   + + 
Sbjct: 104 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163

Query: 123 NIYVLDAYGGE----------------KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 166
              +  AY  E                    F    S        F+ +G  V   S D 
Sbjct: 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 223

Query: 167 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 206
           T+   + + +  VA        +  + +    ++  A   
Sbjct: 224 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD 263

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 11/157 (7%)

Query: 21  CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKL 80
            +   +   +S S D ++++W+         L    R       +  +         I+L
Sbjct: 143 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRL 202

Query: 81  FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL 140
           +D            L   +  E        D K ++    +  I V D          + 
Sbjct: 203 WDIECG------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 256

Query: 141 EPSPNTNTEAT-----FTPDGQYVVSGSGDGTLHAWN 172
                T  E +        D   +VS S D T+  W+
Sbjct: 257 TLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 5e-07
 Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 8/206 (3%)

Query: 7   LRYFKGHKERVIS-LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQ 65
           L+      E      C+   +   +SG  D++++IWD     C+ IL       +     
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

Query: 66  GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 125
             V              +           L          +    +   M+  + + +I 
Sbjct: 65  ERVIITGSS------DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118

Query: 126 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN 185
           V D                +         D +Y+VS SGD T+  WN +T   V   NG+
Sbjct: 119 VWDMASPTDITLRR-VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 177

Query: 186 IGVVACLKWAPRRAMFVAASSVLSFW 211
              +ACL++  R  +  ++ + +  W
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRLW 203

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 40/207 (19%), Positives = 68/207 (32%), Gaps = 9/207 (4%)

Query: 5   RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQ 64
              R   GH   V  LC+       ++GS D +VR+WD+        L       +    
Sbjct: 46  ECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 103

Query: 65  QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 124
              +     +  +I ++D  S         LVG   A            S    + +  I
Sbjct: 104 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSA---SGDRTI 160

Query: 125 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG 184
            V +    E     +                 + VVSGS D T+  W+I     +    G
Sbjct: 161 KVWNTSTCEFVRTLNGHKRGIAC----LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG 216

Query: 185 NIGVVACLKWAPRRAMFVAASSVLSFW 211
           +  +V C+++  +R +  A    +  W
Sbjct: 217 HEELVRCIRFDNKRIVSGAYDGKIKVW 243

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 3e-07
 Identities = 10/65 (15%), Positives = 25/65 (38%)

Query: 152 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 211
              +  YV++G+ D  +  ++   +  +   +G+ G V  LK+A    +   ++      
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78

Query: 212 IPNPS 216
                
Sbjct: 79  WDIKK 83

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 2e-06
 Identities = 32/194 (16%), Positives = 59/194 (30%), Gaps = 46/194 (23%)

Query: 10  FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVF 69
            +GH   VI+ C+   ++  ++G+ D  +R++D         L                 
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS---------------- 50

Query: 70  AVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 129
                                       G    V  +K+++ G  ++  +T+  + V D 
Sbjct: 51  ----------------------------GHDGGVWALKYAHGGI-LVSGSTDRTVRVWDI 81

Query: 130 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV 189
             G     F    S     +     + +Y+V+GS D TLH W +   + V          
Sbjct: 82  KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 141

Query: 190 ACLKWAPRRAMFVA 203
                      FV 
Sbjct: 142 LVFHTPEENPYFVG 155

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 150 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAASS 206
            TF      +VSGS +   + +N+ +   V      +   +  + +  +  +  A   
Sbjct: 288 TTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEK 343

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 4e-07
 Identities = 8/49 (16%), Positives = 21/49 (42%)

Query: 5  RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR 53
          +I++  +  K+ +  + + P     +  S D S+ ++   + A    L 
Sbjct: 2  QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL 50

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 6e-06
 Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 152 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG---VVACLKWAPRRAMFVAASSVL 208
             P    ++  S DG+L  +  + + +      ++     + C  +     + +   +V 
Sbjct: 19  IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ 78

Query: 209 SFW 211
              
Sbjct: 79  GEI 81

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 3/81 (3%)

Query: 97  GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 156
                 V  I+FS   K +    ++  I   +    +K   F      N ++        
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF---AKFNEDSVVKIACSD 304

Query: 157 QYVVSGSGDGTLHAWNINTRN 177
             +   + D T        + 
Sbjct: 305 NILCLATSDDTFKTNAAIDQT 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC-QGILRLRGRPT 59
              +R+          V S+  SP +    +   D  +  W+L+     +   +      
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV 297

Query: 60  VAFDQQGLVFAVAMEAGAIKL 80
           V       +  +A      K 
Sbjct: 298 VKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 16/144 (11%), Positives = 39/144 (27%), Gaps = 14/144 (9%)

Query: 76  GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK- 134
             ++ F     +         G             + +    ++ +  + V         
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229

Query: 135 ------------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 182
                       R                F+P  +++ +   DG +  WN+ TR ++  +
Sbjct: 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289

Query: 183 NGNIGVVACLKWAPRRAMFVAASS 206
                  + +K A    +   A+S
Sbjct: 290 AK-FNEDSVVKIACSDNILCLATS 312

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 7e-07
 Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 9/174 (5%)

Query: 1   MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT- 59
           +++  ++R F+GH +    + +S       +G LD++VR WDLR            +   
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229

Query: 60  VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 119
           + +   G   AV ME+  +++      DK            + V  +KF+  GK  + T 
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH-----ESCVLSLKFAYCGKWFVSTG 284

Query: 120 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173
            +N +       G            ++      + D +Y+V+GSGD     + +
Sbjct: 285 KDNLLNAWRTPYGAS---IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS 206
            F   G++ VS   D  L+AW       +     +   V     +      V  S 
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISVDDKYIVTGSG 326

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 4/105 (3%)

Query: 100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT---FTPDG 156
              VC +  SN  +  + T     + V D      +   S     N +         PDG
Sbjct: 51  GEVVCAVTISNPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 157 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF 201
             ++ G    TL  W++                AC   A      
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 6/71 (8%)

Query: 150 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC-----WNGNIGVVACLKWAPRRAMFVAA 204
            T +   ++V +G   G +  W+I+     +             +   K  P     +  
Sbjct: 57  VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115

Query: 205 SSVLSFWIPNP 215
               +  I + 
Sbjct: 116 GEASTLSIWDL 126

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.1 bits (107), Expect = 1e-06
 Identities = 8/49 (16%), Positives = 17/49 (34%)

Query: 5  RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR 53
           I +   GH + + +L  S    +  S   +  +  WD+       +  
Sbjct: 3  SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 51

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.1 bits (99), Expect = 1e-05
 Identities = 11/69 (15%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAASSVLS 209
           + + DG+ + S   +G +++W+I+T      + + +  ++  +K   +  +F  +     
Sbjct: 19  SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHL 78

Query: 210 FWIPNPSSN 218
             +P   S 
Sbjct: 79  KVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 1e-04
 Identities = 7/54 (12%), Positives = 18/54 (33%)

Query: 120 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 173
            +N++ V +                 ++  +    +   +VS   D  +  WN+
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 0.002
 Identities = 4/41 (9%), Positives = 16/41 (39%)

Query: 3   DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDL 43
            +  +     H    ++  +     + +S   D +++ W++
Sbjct: 257 SDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 5e-06
 Identities = 24/227 (10%), Positives = 59/227 (25%), Gaps = 45/227 (19%)

Query: 10  FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ--------------GILRLR 55
            K H   + S+         +S S D  +++WD ++   +              G+  + 
Sbjct: 10  GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 56  GRPTVAFD-QQGLVFAVAMEAGAIKLFDSRSYDK------GPFDTFLVGGDTAEVCDIKF 108
               +  D  +  + A    +G +  +     D+         D             +K+
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 109 SNDGKS-----MLLTTTNNNIYVLDAYGGEK----------------RCGFSLEPSPNTN 147
                      ++ T      Y+   +                        S        
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 148 TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW 194
           T    +  G  + +G  +GT+    ++T   +  +     ++     
Sbjct: 188 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 22/236 (9%), Positives = 56/236 (23%), Gaps = 30/236 (12%)

Query: 4   NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFD 63
              +       +   S+ +S       +G  + +V+I +L           +       +
Sbjct: 174 QGTVESPMTPSQFATSVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232

Query: 64  QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN 123
                              S  +        +     +  C   +  +    + + +   
Sbjct: 233 S----------------IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 276

Query: 124 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 183
                      +         +     +F   G+ + S   DG L  W++ T+  +   N
Sbjct: 277 --------HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 328

Query: 184 GNIGVVAC----LKWAPRRAMFVAASSV-LSFWIPNPSSNSTDESTDPQATVKSDQ 234
            +   +      L                + F      S    +  +    V  D+
Sbjct: 329 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 384

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 6e-06
 Identities = 12/157 (7%), Positives = 35/157 (22%), Gaps = 2/157 (1%)

Query: 29  FMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYD 87
            ++      + + D        ++              G    V      I + D  + +
Sbjct: 35  SVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKE 94

Query: 88  KGPFDTFLVGGDTAEV-CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT 146
                   +G +   V        + +  +        + +      +            
Sbjct: 95  PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 154

Query: 147 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 183
           +T+          +  S +      N+    +V   N
Sbjct: 155 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 6e-06
 Identities = 27/163 (16%), Positives = 49/163 (30%), Gaps = 10/163 (6%)

Query: 57  RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSML 116
           +     D   L      +AG I L D  S  K        G     V   + S  G+ +L
Sbjct: 23  KQLNDLDLPNLFSVTLRDAGQIALVDGDS--KKIVKVIDTGY---AVHISRMSASGRYLL 77

Query: 117 LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT---FTPDGQYVVSGSGDGTLHAWNI 173
           +   +  I ++D +  E      ++      +  +      + +Y ++G+      A   
Sbjct: 78  VIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 137

Query: 174 NTRNEVACW--NGNIGVVACLKWAPRRAMFVAASSVLSFWIPN 214
               E         + V         R   + AS     +I N
Sbjct: 138 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 180

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (103), Expect = 6e-06
 Identities = 22/167 (13%), Positives = 48/167 (28%), Gaps = 10/167 (5%)

Query: 53  RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 112
               +    +D + L      +AG I L D  +Y+         G     V   + S  G
Sbjct: 19  DRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYE--IKTVLDTGYA---VHISRLSASG 73

Query: 113 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA---TFTPDGQYV-VSGSGDGTL 168
           + + +   +  + ++D +  E      ++      +         + +Y           
Sbjct: 74  RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY 133

Query: 169 HAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAASSVLSFWIPN 214
              +  T       +         ++ P  R   + AS     +I N
Sbjct: 134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 180

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 10/184 (5%), Positives = 35/184 (19%), Gaps = 5/184 (2%)

Query: 31  SGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK-- 88
                 +     +   +   + +      +          +     ++   D  +     
Sbjct: 141 FLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAA-THYLGSCPASLAASDLAAAPAAA 199

Query: 89  GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 148
           G       G         + +  G   L+    ++I   D          +++ + +   
Sbjct: 200 GIVGAQCTGAQNCSSQAAQANYPGM--LVWAVASSILQGDIPAAGATMKAAIDGNESGRK 257

Query: 149 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVL 208
              F   G  +V+   +           +                               
Sbjct: 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSD 317

Query: 209 SFWI 212
           +   
Sbjct: 318 AIIA 321

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 17/180 (9%), Positives = 41/180 (22%), Gaps = 28/180 (15%)

Query: 26  NDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--------TVAFDQQGLVFAVAMEAGA 77
             +   GS   S+   DL        +                  +  G++      +  
Sbjct: 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSIL 234

Query: 78  IKLFDSRS------YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---------N 122
                +         D            +A    +    +   +++ T            
Sbjct: 235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE 294

Query: 123 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY--VVSGSGDGTLHAWNINTRNEVA 180
           N   + A  G+     S     +         DG      + +G   L  ++  +  + +
Sbjct: 295 NTSSVTASVGQTSGPISNGHDSDA---IIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 2e-05
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 136 CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKW 194
                     +    T++PDG  + S S D T+  WN+ T            +    L  
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289

Query: 195 APRRAMFVAASS--VLSFW 211
              +   V+ S+   ++F 
Sbjct: 290 IWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 6/55 (10%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 205
             TP G  +   +G  +++   + +  +   +  +       K +P      +  
Sbjct: 24  GNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 3/83 (3%)

Query: 101 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 160
                +  +  G   +      ++Y +          ++      T   A  +P G Y  
Sbjct: 18  GTAVVLGNTPAGD-KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTV--AKTSPSGYYCA 74

Query: 161 SGSGDGTLHAWNINTRNEVACWN 183
           SG   G +  W+      +    
Sbjct: 75  SGDVHGNVRIWDTTQTTHILKTT 97

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 21  CMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR---PTVAFDQQGLVFAVAMEAGA 77
             SP      S S D +++IW++     +  + +  R     +               G 
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 78  IKLFD 82
           I   +
Sbjct: 305 INFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 104 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 163
             + +S DG  +   + +  I + +    +      +  +   + +       Q +VS S
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTRIEDQQLGIIWTKQALVSIS 300

Query: 164 GDGTLHAWNI 173
            +G ++  N 
Sbjct: 301 ANGFINFVNP 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 7/67 (10%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 122 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEVA 180
           + + V+D          ++  +  T       P G+    + +   +L   ++ T   + 
Sbjct: 11  DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG 70

Query: 181 CWNGNIG 187
             + +  
Sbjct: 71  RIDLSTP 77

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 19/177 (10%), Positives = 37/177 (20%), Gaps = 9/177 (5%)

Query: 10  FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVF 69
           +     ++  L          +G+L     I             L               
Sbjct: 142 WARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201

Query: 70  AVAMEAGAIKLFDS------RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN 123
                        +       + D    +  +      +V     + +          N 
Sbjct: 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNV 261

Query: 124 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 180
           +   D           L  S  +      + DG  V  G   G L A++  T  +  
Sbjct: 262 LESFDLEKNASIKRVPLPHSYYS---VNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 17/146 (11%), Positives = 33/146 (22%), Gaps = 8/146 (5%)

Query: 13  HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLR-GRPTVAFDQQGLVFAV 71
                         D     +    +   DL                  +          
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255

Query: 72  AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 131
                 ++ FD             +         +  S DG ++ L     ++   DA  
Sbjct: 256 FGAYNVLESFDLEKN--ASIKRVPLPH---SYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

Query: 132 GEKRCGFSLEPSPNTNTEA--TFTPD 155
            EK+    L  + + +  +   FT D
Sbjct: 311 LEKKGQVDLPGNASMSLASVRLFTRD 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.3 bits (95), Expect = 5e-05
 Identities = 18/121 (14%), Positives = 31/121 (25%), Gaps = 7/121 (5%)

Query: 60  VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 119
             F       A A         D ++   G   T      T        S    +  +  
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKT---GKTHTQEFADLTELYFTGLRSPKDPN-QIYG 269

Query: 120 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 179
             N +   D    +     +L+ +        F   G  +  G     L  +N +T  +V
Sbjct: 270 VLNRLAKYDLKQRKLIKAANLDHTYYC---VAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326

Query: 180 A 180
            
Sbjct: 327 K 327

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 8/135 (5%)

Query: 108 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGDG 166
                + M++T   NN++V+D           + P       A   PD +   V  +  G
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 167 TLHAWNINTRNEVAC------WNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNST 220
            ++  +++T                   +     +P      A  +       +      
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122

Query: 221 DESTDPQATVKSDQV 235
                  A     + 
Sbjct: 123 RLEVFSTADGLEAKP 137

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 7e-05
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 3  DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLR 44
           + +L+   GH + + +L ++P     +SGS D  +  W   
Sbjct: 2  HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (79), Expect = 0.004
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 144 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRAMFV 202
           P          +   V +GS D  +  +++    + +   N +   V  L W       V
Sbjct: 215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLV 273

Query: 203 AASS 206
           ++ +
Sbjct: 274 SSGA 277

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 95  LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 154
            V    A        +        T +  + VLDA  GE+   F +            + 
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI---DSINVSQ 309

Query: 155 DGQY--VVSGSGDGTLHAWNINTRNEVA 180
           D +       +GD TL+  +  +  E+ 
Sbjct: 310 DEKPLLYALSTGDKTLYIHDAESGEELR 337

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 6e-04
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 152 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA---PRRAMFVAASS-- 206
              D Q   +   D T+  W++ T   V  W  +   +   +           ++ S   
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 207 VLSFW 211
            L+F+
Sbjct: 319 TLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 104 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSG 162
                  D +       +  I V D    +    ++L+     N +      G   ++S 
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314

Query: 163 SGDGTLHAWNI 173
           S DGTL+ + +
Sbjct: 315 SLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 12/108 (11%)

Query: 101 AEVCDIKFSNDGKSMLLTTTNNN-IYVLDAYGGEKRCGFSLE-PSPNTNTEATFTP--DG 156
                + +     ++      +  +  LD    +            +  T   F+P    
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 157 QYVVSGSGDGTLHAWNINTRNEV--------ACWNGNIGVVACLKWAP 196
           QY+ SG   G +  W      E         + +    G ++ + W  
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF 125

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 6e-04
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEV 179
           ++NI V+D    +      +  +P     A  +PDG  V V+ +    +   +  T N +
Sbjct: 11  SDNISVIDVTSNKVTATIPVGSNP---MGAVISPDGTKVYVANAHSNDVSIIDTATNNVI 67

Query: 180 ACWNGNIGVVACLKWAPRRAMF 201
           A                 + ++
Sbjct: 68  ATVPAGSSPQGVAVSPDGKQVY 89

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 151 TFTPDGQYV-VSGSGDGTLHAWNINTRNEVA 180
             TPDG+ V V+ S   T+   +  T    A
Sbjct: 250 AVTPDGKKVYVALSFCNTVSVIDTATNTITA 280

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 1/71 (1%)

Query: 121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEV 179
           +  I+V +           +   P        +PD +Y+ V    +  + A+ I   +  
Sbjct: 13  SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA 72

Query: 180 ACWNGNIGVVA 190
             +     +  
Sbjct: 73  LTFAAESALPG 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.9
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.56
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.47
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.46
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.46
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.43
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.41
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.41
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.37
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.34
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.24
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.23
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.16
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.16
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.14
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.08
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.07
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.07
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.04
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.04
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.99
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.98
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.91
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.9
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.5
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.28
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.08
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.99
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.83
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.65
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.48
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.48
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	97.43
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.41
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.41
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.26
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.26
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.19
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.18
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.04
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.93
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.82
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.75
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.69
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.33
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.19
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.92
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.87
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.75
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.58
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.8
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.29
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.28
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	92.11
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.98
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	88.49
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	80.51
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	80.26

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.6e-41  Score=247.85  Aligned_cols=208  Identities=17%  Similarity=0.272  Sum_probs=181.5

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEe
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      +..++|+||.++|++++|+|++++|++|+.||+|+|||+.+++.+..+..+...+  ++|+|++.++++++.|+.+.+|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            3456789999999999999999999999999999999999999998888776554  88899888888888888888887


Q ss_pred             ccCCCC--------------------------------------------------------------------------
Q 026679           83 SRSYDK--------------------------------------------------------------------------   88 (235)
Q Consensus        83 ~~~~~~--------------------------------------------------------------------------   88 (235)
                      ......                                                                          
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence            543110                                                                          


Q ss_pred             ---------CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE
Q 026679           89 ---------GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV  159 (235)
Q Consensus        89 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  159 (235)
                               .......+.+|...|++++|+|++++|++++.|+.|++||++..+....+....+...+.+++|+|++++|
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEE
T ss_pred             ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEE
Confidence                     00112334467889999999999999999999999999999999888877777777889999999999999


Q ss_pred             EEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679          160 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      ++|+.||.|++||+.+++.+..+.+|.++|++++|+|++.+|++|+  +.|+|||
T Consensus       286 ~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999999999999999999999999999987  8899997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.7e-39  Score=236.72  Aligned_cols=211  Identities=17%  Similarity=0.256  Sum_probs=179.4

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceee--eeeeccCCce--EEEcCCCCEEEEEec--C
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ--GILRLRGRPT--VAFDQQGLVFAVAME--A   75 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~~--~~~~~~~~~l~~~~~--d   75 (235)
                      ++++..+.+.+|.+.|++++|+|+|++|++|+.||+|++||+.++...  ..+..+...+  ++|+|+++++++++.  +
T Consensus        46 ~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~  125 (311)
T d1nr0a1          46 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE  125 (311)
T ss_dssp             TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccc
Confidence            455677788999999999999999999999999999999999887643  4455555444  999999999999986  4


Q ss_pred             CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCe-EEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeC
Q 026679           76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP  154 (235)
Q Consensus        76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~  154 (235)
                      ..+++|++++.+.    ...+.+|...|.+++|+|++++ |++++.|+.|++||+++++....+.  .|...|.++.|+|
T Consensus       126 ~~~~v~~~~~~~~----~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~--~~~~~i~~v~~~p  199 (311)
T d1nr0a1         126 RFGHVFLFDTGTS----NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EHTKFVHSVRYNP  199 (311)
T ss_dssp             CSEEEEETTTCCB----CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--CCSSCEEEEEECT
T ss_pred             ccccccccccccc----cccccccccccccccccccceeeecccccccccccccccccccccccc--cccccccccccCc
Confidence            5699999987664    4456788899999999999886 7788999999999999988776554  4556799999999


Q ss_pred             CCcEEEEeCCCCcEEEEEcCCCceeeee-------cCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          155 DGQYVVSGSGDGTLHAWNINTRNEVACW-------NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       155 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      ++++|++++.|+.|++||.++++.+..+       .+|...|++++|+|++++|++++  +.++|||+++.+.
T Consensus       200 ~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~  272 (311)
T d1nr0a1         200 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV  272 (311)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            9999999999999999999988776554       35788999999999999999997  7799999987654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.9e-38  Score=229.78  Aligned_cols=203  Identities=18%  Similarity=0.285  Sum_probs=171.9

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc---------------------------
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP---------------------------   58 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---------------------------   58 (235)
                      ....|+||.++|++++|+|++++|+||+.||+|+|||+++++.+..+..|...                           
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            44578999999999999999999999999999999999988777666543211                           


Q ss_pred             -----------------eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC
Q 026679           59 -----------------TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN  121 (235)
Q Consensus        59 -----------------~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  121 (235)
                                       .+.++|+++.+++++.|+.+++||++++..    ...+..|...+.+++|+|++++|++++.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC----VKTFTGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEeeccccee----eeEEccCCCcceeeecccCCCEEEEEeCC
Confidence                             256677788889999999999999987654    55667888999999999999999999999


Q ss_pred             CcEEEEEcCCCceeeee------------------------------------------------------------ccC
Q 026679          122 NNIYVLDAYGGEKRCGF------------------------------------------------------------SLE  141 (235)
Q Consensus       122 ~~i~~~d~~~~~~~~~~------------------------------------------------------------~~~  141 (235)
                      +.|++|++.+++....+                                                            .+.
T Consensus       165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  244 (317)
T d1vyhc1         165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  244 (317)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe
Confidence            99999988765433221                                                            112


Q ss_pred             CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679          142 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       142 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      .|...|.+++|+|++++|++|+.||.|++||+++++++..+.+|..+|++++|+|++++|++++  +.|+|||
T Consensus       245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            3456788999999999999999999999999999999999999999999999999999999987  7899997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-37  Score=231.77  Aligned_cols=210  Identities=13%  Similarity=0.133  Sum_probs=176.9

Q ss_pred             hhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee--eccC--CceEEEcCCCCEEEEEecCCeEEEE
Q 026679            6 ILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL--RLRG--RPTVAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         6 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      .+..+++|.++|++++|+|++++|++|+.|++|++||+.++.....+  ..+.  ..+++|+|+++.|++++.|+.+++|
T Consensus        43 ~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~  122 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  122 (371)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceee
Confidence            56678999999999999999999999999999999999877654444  3333  3348999999999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce----------------eeeeccCCCCC
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK----------------RCGFSLEPSPN  145 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----------------~~~~~~~~~~~  145 (235)
                      ++...............|...|.+++|+|++++|++++.|+.|++||......                ........+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (371)
T d1k8kc_         123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG  202 (371)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred             eeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccC
Confidence            99876653333445567888999999999999999999999999999865431                11233456667


Q ss_pred             cceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-cceEEeeCCC
Q 026679          146 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP  215 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~  215 (235)
                      .+.+++|+|++++|++++.|+.|++||+.+++.+..+..|..+|.+++|+|++.+|++|. +.+++|..+.
T Consensus       203 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         203 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             cEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence            899999999999999999999999999999999999999999999999999999999886 6677776643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-36  Score=222.00  Aligned_cols=207  Identities=17%  Similarity=0.294  Sum_probs=160.9

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee-cc---------------------------
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR-LR---------------------------   55 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~---------------------------   55 (235)
                      |++.+.++||.++|++++|+|++++|++|+.||+|++||+++++....+. .|                           
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence            56788999999999999999999999999999999999987665544332 11                           


Q ss_pred             --------------------------------------------------------CCceEEEcCCCCEEEEEecCCeEE
Q 026679           56 --------------------------------------------------------GRPTVAFDQQGLVFAVAMEAGAIK   79 (235)
Q Consensus        56 --------------------------------------------------------~~~~~~~~~~~~~l~~~~~dg~v~   79 (235)
                                                                              ...+++++|+++++++++.||.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  161 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH  161 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                                    011256667777788888888888


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee-eccCCCCCcceeeEEeCCCcE
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG-FSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      +||+++.+.   .......|...|.+++|+|++++|++++.|+.|++||+.++..... .....|...|++++|+|++++
T Consensus       162 ~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  238 (299)
T d1nr0a2         162 VYKLSGASV---SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR  238 (299)
T ss_dssp             EEEEETTEE---EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred             ccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888776432   2234456788999999999999999999999999999987765433 234556778999999999999


Q ss_pred             EEEeCCCCcEEEEEcCCCceeee--ecCC-CcceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          159 VVSGSGDGTLHAWNINTRNEVAC--WNGN-IGVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       159 l~~~~~dg~i~v~d~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      |++|+.||.|++||++++.....  ...| ...+.++.| +++.+|++++  +.|++||+.
T Consensus       239 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             eEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            99999999999999987654332  2333 446666655 5567888876  889999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.4e-36  Score=224.38  Aligned_cols=203  Identities=10%  Similarity=0.062  Sum_probs=169.9

Q ss_pred             cccceeEEEeecCCCeeEEEeccceEEEEecCcce--eeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679           13 HKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--CQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDK   88 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~   88 (235)
                      +.++|+|++|+|++++||+|+.|+.|++||..+++  .+..++.|...+  ++|+|++++|++++.|+.|++||+.+...
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            34789999999999999999999999999998765  566677776554  99999999999999999999999986543


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCcee--eeeccCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGSGDG  166 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  166 (235)
                        ........|...|.+++|+|+++.|++++.|+.+++|++......  .......+...|.+++|+|++++|++|+.|+
T Consensus        86 --~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~  163 (371)
T d1k8kc_          86 --KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  163 (371)
T ss_dssp             --EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             --ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCc
Confidence              223445678889999999999999999999999999998765432  2233455667899999999999999999999


Q ss_pred             cEEEEEcCCC------------------ceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          167 TLHAWNINTR------------------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       167 ~i~v~d~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      .|++||....                  +.+.....|...|.+++|+|++++|++++  +.+++||+....
T Consensus       164 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~  234 (371)
T d1k8kc_         164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM  234 (371)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred             EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccc
Confidence            9999997643                  23455567888999999999999999987  789999997654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-35  Score=218.29  Aligned_cols=203  Identities=16%  Similarity=0.214  Sum_probs=170.8

Q ss_pred             hhhcccccceeEEEeecCCCeeEEEec--cceEEEEecCcceeeeeeeccCCce--EEEcCCCCE-EEEEecCCeEEEEe
Q 026679            8 RYFKGHKERVISLCMSPVNDSFMSGSL--DHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLV-FAVAMEAGAIKLFD   82 (235)
Q Consensus         8 ~~~~~h~~~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~-l~~~~~dg~v~i~d   82 (235)
                      ..+++|.++|.+++|+|++++|++++.  +..+++|++++++....+..|...+  ++|+|++++ |++|+.|+.|++||
T Consensus        96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d  175 (311)
T d1nr0a1          96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE  175 (311)
T ss_dssp             EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred             cccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccc
Confidence            457889999999999999999998875  4569999999998888888776554  899998874 88899999999999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc-----CCCCCcceeeEEeCCCc
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL-----EPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~  157 (235)
                      +++.+.    ......|...|.++.|+|+++++++++.|+.|++||+++++....+..     ..|...|.+++|+|+++
T Consensus       176 ~~~~~~----~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~  251 (311)
T d1nr0a1         176 GPPFKF----KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT  251 (311)
T ss_dssp             TTTBEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred             cccccc----ccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCC
Confidence            987654    566778899999999999999999999999999999999887766543     24567899999999999


Q ss_pred             EEEEeCCCCcEEEEEcCCCceeeeecCCCc-ceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          158 YVVSGSGDGTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      +|++|+.||.|++||+++++++.++..|.. ....+.+.+++..|++++  |.|++||++
T Consensus       252 ~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            999999999999999999999988876643 233344555566677776  899999975

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-35  Score=216.63  Aligned_cols=201  Identities=15%  Similarity=0.192  Sum_probs=176.8

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEE
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLF   81 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~   81 (235)
                      ++....+.+|...|.+++|+|++.++++++.|+.|++|++.+++.......+...+  ++|++++..+++++.|+.+++|
T Consensus       131 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~  210 (337)
T d1gxra_         131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW  210 (337)
T ss_dssp             -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34556678899999999999999999999999999999999998888877766544  8999999999999999999999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS  161 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  161 (235)
                      |+++++.     .....+...|.+++|+|+++.+++++.|+.+++||+++++...   ...|...|.+++|+|++++|++
T Consensus       211 d~~~~~~-----~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~i~~v~~s~~g~~l~s  282 (337)
T d1gxra_         211 DLREGRQ-----LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---LHLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             ETTTTEE-----EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---ECCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccee-----ecccccccceEEEEEcccccccceecccccccccccccccccc---ccccccccceEEECCCCCEEEE
Confidence            9987652     3344577899999999999999999999999999999887653   3456677999999999999999


Q ss_pred             eCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          162 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       162 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      ++.||.|++||+.+++.+..+. |...|.+++|+|++++|++++  +.|+|||+
T Consensus       283 ~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         283 TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999887765 778999999999999999987  78999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-34  Score=211.34  Aligned_cols=201  Identities=17%  Similarity=0.244  Sum_probs=174.7

Q ss_pred             hcccccceeEEEeecCCCeeEEEeccceEEEEecCcc--eeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccC
Q 026679           10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVN--ACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      ..+|.+.|.+++|+|++++|++|+.||.|++||+...  +....+..+...+  ++++|++..+++++.++.+++|++.+
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3478999999999999999999999999999998754  4455566665444  88999999999999999999999987


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD  165 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  165 (235)
                      .+.    ......|...+.+++|++++..+++++.|+.+++||+++++.+..+.   +...|.+++|+|++++|++++.|
T Consensus       173 ~~~----~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~~~~d  245 (337)
T d1gxra_         173 QTL----VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             TEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccc----cccccccccccccccccccccccccccccccccccccccceeecccc---cccceEEEEEcccccccceeccc
Confidence            654    55667788999999999999999999999999999999998876654   34669999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          166 GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       166 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      +.+++||+++++.. ....|...|.+++|+|++++|++++  +.+++|++...+.
T Consensus       246 ~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~  299 (337)
T d1gxra_         246 SNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             SCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCE
Confidence            99999999888765 4556899999999999999999987  7799999976543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=213.17  Aligned_cols=212  Identities=23%  Similarity=0.373  Sum_probs=171.7

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcC-CCCEEEEEecCCeEEE
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQ-QGLVFAVAMEAGAIKL   80 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~~~~~dg~v~i   80 (235)
                      +++.+..+.+|...|.+++|++++..+++++.++.+++||.++.........+.... +.+.+ ++.+|++++.||.+++
T Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  231 (388)
T d1erja_         152 NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV  231 (388)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEE
Confidence            456667788999999999999999999999999999999999888777776665444 55554 8899999999999999


Q ss_pred             EeccCCCCCCc---eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeee----------eccCCCCCcc
Q 026679           81 FDSRSYDKGPF---DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG----------FSLEPSPNTN  147 (235)
Q Consensus        81 ~d~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----------~~~~~~~~~i  147 (235)
                      ||.++......   ......+|...|.+++|+|++++|++++.|+.|++||+++++....          .....|...|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  311 (388)
T d1erja_         232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV  311 (388)
T ss_dssp             EETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCE
T ss_pred             eecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceE
Confidence            99987653111   1122346788999999999999999999999999999987654322          1223455779


Q ss_pred             eeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEe------ecCCCEEEEcc--cceEEeeCC
Q 026679          148 TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW------APRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       148 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      .+++|+|++++|++|+.||.|++||+++++++.++++|.+.|.++++      +|++.+|++++  +.|+||+++
T Consensus       312 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99999999999999999999999999999999999999999999874      67899999987  789999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.9e-33  Score=209.01  Aligned_cols=198  Identities=17%  Similarity=0.330  Sum_probs=164.7

Q ss_pred             ccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC--------------------CceEEEcCCCCEEEE
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG--------------------RPTVAFDQQGLVFAV   71 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~   71 (235)
                      +|++.|+|++|+|+|++|++|+ |++|++||+.+++.+..+..+.                    +.+++|+|++++|++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            6999999999999999999987 8999999999888776664321                    234899999999999


Q ss_pred             EecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeE
Q 026679           72 AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT  151 (235)
Q Consensus        72 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~  151 (235)
                      |+.||.|++||....+.    .....+|...|.++++++++..+++++.++.+++||.++.........+.   ....+.
T Consensus       139 ~~~dg~v~i~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~  211 (388)
T d1erja_         139 GAEDRLIRIWDIENRKI----VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVTTVA  211 (388)
T ss_dssp             EETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred             ccccccccccccccccc----ccccccccccccccccccccccccccccceeeeeeecccccccccccccc---cccccc
Confidence            99999999999987654    56677899999999999999999999999999999999887766554332   244455


Q ss_pred             EeC-CCcEEEEeCCCCcEEEEEcCCCceeeee-------cCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          152 FTP-DGQYVVSGSGDGTLHAWNINTRNEVACW-------NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       152 ~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +.+ ++++|++++.||.|++||.+++.....+       .+|...|.+++|+|++.+|++++  +.+++|++....
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~  287 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  287 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             ccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCc
Confidence            554 8899999999999999999988776554       35788999999999999999987  789999997654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.6e-33  Score=204.97  Aligned_cols=208  Identities=14%  Similarity=0.199  Sum_probs=168.8

Q ss_pred             hhhhccc-ccceeEEEeec--CCCeeEEEeccceEEEEecCcceeeeee--------eccCCc--eEEEcCCCCEEEEEe
Q 026679            7 LRYFKGH-KERVISLCMSP--VNDSFMSGSLDHSVRIWDLRVNACQGIL--------RLRGRP--TVAFDQQGLVFAVAM   73 (235)
Q Consensus         7 ~~~~~~h-~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~~--------~~~~~~--~~~~~~~~~~l~~~~   73 (235)
                      +..+.+| ...|++++|+|  ++.+|++|+.||+|++||+..++....+        ..+...  .++|+++++.+++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            4456677 46899999998  5679999999999999999765433222        233333  489999999988876


Q ss_pred             c--CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCe-EEEecCCCcEEEEEcCCCceeeeec-cCCCCCccee
Q 026679           74 E--AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTE  149 (235)
Q Consensus        74 ~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~i~~  149 (235)
                      .  ++.+.+|+..+++.    ...+.+|...|.+++|+|++.. +++++.|+.+++||....+...... ...+...|.+
T Consensus       135 ~~~~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~  210 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNS----LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD  210 (325)
T ss_dssp             CCSSCSEEEEETTTCCE----EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             ccccceEEEEeeccccc----ceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEE
Confidence            5  67899999887653    5667789999999999998876 6678899999999998877655543 3456678999


Q ss_pred             eEEeCC-CcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEee---cCCCEEEEcc--cceEEeeCCCCCC
Q 026679          150 ATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA---PRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       150 ~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      ++|+|+ +.+|++++.|+.|++||+++++.+..+.+|..++.++.|+   |++.+|++++  +.++|||+++++.
T Consensus       211 v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~  285 (325)
T d1pgua1         211 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC  285 (325)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCE
Confidence            999996 6899999999999999999999999999998888777776   6899999987  8899999987653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-32  Score=201.18  Aligned_cols=203  Identities=16%  Similarity=0.276  Sum_probs=156.1

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce------------------------
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT------------------------   59 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~------------------------   59 (235)
                      .++.+.|+||.+.|.+ +++++|++|+||+.||+|+|||+.+++++..+..|...+                        
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA   84 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceeccccccccc
Confidence            3566789999999865 466779999999999999999999888776665442111                        


Q ss_pred             --------------------------------------------------------------------------------
Q 026679           60 --------------------------------------------------------------------------------   59 (235)
Q Consensus        60 --------------------------------------------------------------------------------   59 (235)
                                                                                                      
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~  164 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP  164 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred             ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec
Confidence                                                                                            


Q ss_pred             ----------------EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCc
Q 026679           60 ----------------VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN  123 (235)
Q Consensus        60 ----------------~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  123 (235)
                                      ..+.+++..+++++.||.|++||++..+.    ......|...+.+++++  +++|++++.|+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~  238 (342)
T d2ovrb2         165 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC----IHTLTGHQSLTSGMELK--DNILVSGNADST  238 (342)
T ss_dssp             GGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE----EEEECCCCSCEEEEEEE--TTEEEEEETTSC
T ss_pred             ccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeeccccee----eeEecccccceeEEecC--CCEEEEEcCCCE
Confidence                            22333456677777777777777766543    55566778888877765  468999999999


Q ss_pred             EEEEEcCCCceeeeeccC-CCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-----CCCcceeEEEeecC
Q 026679          124 IYVLDAYGGEKRCGFSLE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-----GNIGVVACLKWAPR  197 (235)
Q Consensus       124 i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~  197 (235)
                      |++||+...+....+..+ .+...+.++.  ++++++++|+.||.|++||+++++.+..+.     +|...|++++|+|+
T Consensus       239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQ--FNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             EEEEETTTCCEEEEECSTTSCSSCEEEEE--ECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             EEEEecccccccccccccceeeeceeecc--cCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            999999988877665543 3344454444  466799999999999999999999887763     56778999999999


Q ss_pred             CCEEEEcc--cc----eEEeeCCC
Q 026679          198 RAMFVAAS--SV----LSFWIPNP  215 (235)
Q Consensus       198 ~~~l~~~~--~~----i~iw~~~~  215 (235)
                      +.++++|+  |+    +++||++.
T Consensus       317 ~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999987  43    89999875

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-32  Score=198.97  Aligned_cols=202  Identities=18%  Similarity=0.274  Sum_probs=150.0

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeee-----eee------------------------
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG-----ILR------------------------   53 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-----~~~------------------------   53 (235)
                      +++++++|+||.++|++++|+|    |+||+.||+|++||+.++...+     .+.                        
T Consensus         2 ~~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~   77 (287)
T d1pgua2           2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH   77 (287)
T ss_dssp             EEEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE
T ss_pred             CcceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeecccccccccccc
Confidence            3578889999999999999987    8899999999999875432100     000                        


Q ss_pred             ------------------------------cc----------CCceEEEcCCCCEEEEEecCC-eEEEEeccCCCCCCce
Q 026679           54 ------------------------------LR----------GRPTVAFDQQGLVFAVAMEAG-AIKLFDSRSYDKGPFD   92 (235)
Q Consensus        54 ------------------------------~~----------~~~~~~~~~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~   92 (235)
                                                    ..          .....++++++..+++++.++ .+++|++...+.   .
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~---~  154 (287)
T d1pgua2          78 EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV---S  154 (287)
T ss_dssp             ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE---E
T ss_pred             ccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccce---e
Confidence                                          00          011234555666666666654 578887754332   1


Q ss_pred             eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC----------CcEEEEe
Q 026679           93 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD----------GQYVVSG  162 (235)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~l~~~  162 (235)
                      ......+...+++++|+|++.+|++++.||.|++||+.+++.... ....|...|.+++|+|.          +.+|++|
T Consensus       155 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg  233 (287)
T d1pgua2         155 FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS-RWAFRTSKINAISWKPAEKGANEEEIEEDLVATG  233 (287)
T ss_dssp             EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC-CSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred             eeeeeccCCceeEEEeccCccccccccccccccceeecccccccc-cccccccccceeeecccccccccccCCCCeeEee
Confidence            122234667899999999999999999999999999998876543 33456677999999875          4689999


Q ss_pred             CCCCcEEEEEcCC-CceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          163 SGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       163 ~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      +.|+.|++||+++ .+.+..+.+|...|++++|+|++. |++++  +.+++|++
T Consensus       234 s~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             ETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             cCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence            9999999999976 556677789999999999999876 55554  88999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-31  Score=200.76  Aligned_cols=207  Identities=12%  Similarity=0.151  Sum_probs=153.0

Q ss_pred             hhcccccceeEEEeecCCCeeEEEeccceEEEEecCccee------eeeeecc---------------------------
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNAC------QGILRLR---------------------------   55 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~------~~~~~~~---------------------------   55 (235)
                      ..++|.+.|.++++++  ++++|+|.|++|++||..+...      ......+                           
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            4579999999999874  6899999999999999643210      0000000                           


Q ss_pred             -C---------------------------------CceEEEcCC-----CCEEEEEecCCeEEEEeccCCCC--------
Q 026679           56 -G---------------------------------RPTVAFDQQ-----GLVFAVAMEAGAIKLFDSRSYDK--------   88 (235)
Q Consensus        56 -~---------------------------------~~~~~~~~~-----~~~l~~~~~dg~v~i~d~~~~~~--------   88 (235)
                       .                                 ...+++.++     +.++++++.||.+++|++.....        
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence             0                                 001233332     35677888888888888753221        


Q ss_pred             -CCc-----eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc----CCCCCcceeeEEeCCCcE
Q 026679           89 -GPF-----DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL----EPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        89 -~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~  158 (235)
                       ...     .......+...+.+++|+|++ +|++|+.|+.|++||+.+++.+..+..    ..|..+|.+++|+|+|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  245 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL  245 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccce
Confidence             000     011112334568899999997 789999999999999999887765543    457788999999999999


Q ss_pred             EEEeCCCCc---EEEEEcCCCceeeee-------------cCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          159 VVSGSGDGT---LHAWNINTRNEVACW-------------NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       159 l~~~~~dg~---i~v~d~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      |++|+.|+.   |++||+++++.+..+             .+|...|++++|+|++++|++++  +.|++||+++++.
T Consensus       246 l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER  323 (393)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence            999998874   999999998877665             37999999999999999999998  8899999987643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.2e-30  Score=188.53  Aligned_cols=200  Identities=14%  Similarity=0.150  Sum_probs=157.3

Q ss_pred             hcccccceeEEEeecCCCeeEEEec--cceEEEEecCcceeeeeeeccCCce--EEEcCCCCE-EEEEecCCeEEEEecc
Q 026679           10 FKGHKERVISLCMSPVNDSFMSGSL--DHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLV-FAVAMEAGAIKLFDSR   84 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~-l~~~~~dg~v~i~d~~   84 (235)
                      +..|.++|.+++|+++++++++++.  ++.+++|+.++++.+..+..|...+  ++|+|++.. +++++.|+.+++||..
T Consensus       111 ~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~  190 (325)
T d1pgua1         111 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP  190 (325)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred             cccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccc
Confidence            4568889999999999999887754  6789999999999998888777654  899998764 7789999999999987


Q ss_pred             CCCCCCceeEeecCCCcceeEEEEccC-CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEe---CCCcEEE
Q 026679           85 SYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT---PDGQYVV  160 (235)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~  160 (235)
                      ..+.. ........|...|.+++|+|+ +.++++++.|+.|++||+++++.+..+..+  ..++..+.|+   |++++|+
T Consensus       191 ~~~~~-~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~--~~~v~~~~~s~~~~dg~~l~  267 (325)
T d1pgua1         191 PFKFS-ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD--QEPVQGGIFALSWLDSQKFA  267 (325)
T ss_dssp             TBEEE-EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT--TBCCCSCEEEEEESSSSEEE
T ss_pred             ccccc-eecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccc--ccccccceeeeeccCCCEEE
Confidence            65421 111223456788999999996 678899999999999999999988776543  3446666665   7899999


Q ss_pred             EeCCCCcEEEEEcCCCceeeeecCCCcc--eeEEE--eecCCCEEEEcc--cceEEeeC
Q 026679          161 SGSGDGTLHAWNINTRNEVACWNGNIGV--VACLK--WAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       161 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~--v~~~~--~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      +++.|+.|+|||+++++++..+..|...  +..++  |.+++ +|++++  +.|++||+
T Consensus       268 s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         268 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred             EEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence            9999999999999999998887665443  33444  44444 666776  88999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-29  Score=187.92  Aligned_cols=201  Identities=15%  Similarity=0.199  Sum_probs=153.6

Q ss_pred             hhhcccccce-eEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEecc
Q 026679            8 RYFKGHKERV-ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSR   84 (235)
Q Consensus         8 ~~~~~h~~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~   84 (235)
                      .+|+||...| +|++|  ++++|+||+.||+|+|||+.+++.+..+..|...+  ++|+|+ ..|++++.|+.|++|+..
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            4689998886 56555  57899999999999999999999999999887665  889885 589999999999999988


Q ss_pred             CCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCC--------------------------------
Q 026679           85 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--------------------------------  132 (235)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--------------------------------  132 (235)
                      ....  ........+........+.+++..+++++.|+.|++||+++.                                
T Consensus        83 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          83 KGCC--THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTEE--EEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             cccc--ccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            7543  111111222233444555666667777777777777776542                                


Q ss_pred             -------------------------------ceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeee
Q 026679          133 -------------------------------EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC  181 (235)
Q Consensus       133 -------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~  181 (235)
                                                     +.....  ..+...+.++.|+|+++++++++.|+.|++||.+++..+..
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  238 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL--SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT  238 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cccccccccccceeeeecccceeeeeecccccceeee--eccccccccccccccceeeecccccceEEeeeccccccccc
Confidence                                           222211  22335577889999999999999999999999999999999


Q ss_pred             ecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCC
Q 026679          182 WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS  217 (235)
Q Consensus       182 ~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~  217 (235)
                      +.+|...|.+++|++  ++|++++  +.|++||++...
T Consensus       239 ~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~  274 (355)
T d1nexb2         239 LQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS  274 (355)
T ss_dssp             ECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccccccccccc--ceeeeeecccccccccccccc
Confidence            999999999999864  6788887  889999997654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-29  Score=181.97  Aligned_cols=196  Identities=16%  Similarity=0.237  Sum_probs=147.7

Q ss_pred             hhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCC
Q 026679            7 LRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSY   86 (235)
Q Consensus         7 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~   86 (235)
                      +..+..|...|+|++|  ++++|+||+.||+|+|||+++++++..+..|...+.++++++++|++|+.|+.+++|++...
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccc
Confidence            3445677888998765  68999999999999999999999999999998888788889999999999999999998652


Q ss_pred             CCC---------------------------------------Cc------------------------------------
Q 026679           87 DKG---------------------------------------PF------------------------------------   91 (235)
Q Consensus        87 ~~~---------------------------------------~~------------------------------------   91 (235)
                      ...                                       ..                                    
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~  165 (293)
T d1p22a2          86 EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNT  165 (293)
T ss_dssp             CEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred             cccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecC
Confidence            200                                       00                                    


Q ss_pred             ----eeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc
Q 026679           92 ----DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT  167 (235)
Q Consensus        92 ----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  167 (235)
                          ....+.++...+..+.  +++..+++++.|+.|++||+++.+.+.....  +...+.  .+++++.+|++|+.||.
T Consensus       166 ~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~--~~~~~~~~l~sg~~dg~  239 (293)
T d1p22a2         166 STCEFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRVLEG--HEELVR--CIRFDNKRIVSGAYDGK  239 (293)
T ss_dssp             TTCCEEEEEECCSSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEECC--CSSCEE--EEECCSSEEEEEETTSC
T ss_pred             CCCcEEEEEccccccccccc--CCCCeEEEecCCCEEEEEecccceeeeeecc--cceeee--eccccceEEEEEcCCCE
Confidence                0001111222233333  3456788888888888888888877765543  333343  56778899999999999


Q ss_pred             EEEEEcCC---------CceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679          168 LHAWNINT---------RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       168 i~v~d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                      |++||+..         ...+..+.+|.+.|++++|+  +.+|++++  +.|++||
T Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            99999753         23567788999999999984  56889987  7899997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.8e-29  Score=183.70  Aligned_cols=211  Identities=14%  Similarity=0.279  Sum_probs=162.2

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce----EEEcCCCCEEEEEecCCe
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT----VAFDQQGLVFAVAMEAGA   77 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~dg~   77 (235)
                      +++++++++++|.++|++++|+|+ .+|++|+.|++|++|+....+............    ..+.+++..+++++.|+.
T Consensus        41 ~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  119 (355)
T d1nexb2          41 INKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  119 (355)
T ss_dssp             TTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSE
T ss_pred             CCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCc
Confidence            567889999999999999999985 589999999999999998887666555444322    556677888888888888


Q ss_pred             EEEEeccCCCCCC-----------------------------------------------------------ceeEeecC
Q 026679           78 IKLFDSRSYDKGP-----------------------------------------------------------FDTFLVGG   98 (235)
Q Consensus        78 v~i~d~~~~~~~~-----------------------------------------------------------~~~~~~~~   98 (235)
                      +++||++......                                                           ........
T Consensus       120 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  199 (355)
T d1nexb2         120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG  199 (355)
T ss_dssp             EEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeec
Confidence            8888876422100                                                           00112234


Q ss_pred             CCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCce
Q 026679           99 DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE  178 (235)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  178 (235)
                      +...+.++.++|++..+++++.|+.|++||++++.....+.  .|...|.+++++  +++|++++.||.|++||++++..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~  275 (355)
T d1nexb2         200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ--GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR  275 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccccccccccceeeecccccceEEeeeccccccccccc--cccccccccccc--cceeeeeecccccccccccccce
Confidence            55677789999999999999999999999999998877665  455678888886  46999999999999999988765


Q ss_pred             eeeecCCCcceeEE-EeecCCCEEEEcc-cceEEeeCCCCCCC
Q 026679          179 VACWNGNIGVVACL-KWAPRRAMFVAAS-SVLSFWIPNPSSNS  219 (235)
Q Consensus       179 ~~~~~~~~~~v~~~-~~~~~~~~l~~~~-~~i~iw~~~~~~~~  219 (235)
                      ...  .|...+.++ .+++++.++++++ +.|++||+++++..
T Consensus       276 ~~~--~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         276 KFS--YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV  316 (355)
T ss_dssp             EEE--EECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBC
T ss_pred             ecc--cccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEE
Confidence            443  455555554 5677888888887 88999999876654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.1e-30  Score=189.45  Aligned_cols=209  Identities=15%  Similarity=0.166  Sum_probs=148.2

Q ss_pred             hhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeee---eccCCc--eEEEcCC-CCEEEEEecCCeE
Q 026679            5 RILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGIL---RLRGRP--TVAFDQQ-GLVFAVAMEAGAI   78 (235)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~~~--~~~~~~~-~~~l~~~~~dg~v   78 (235)
                      |+++..++|++.|++|+|+|++++|++|+.||+|+|||++.+.....+   ..|...  +++|+|+ +.+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            467788999999999999999999999999999999999765432222   234443  4889986 4689999999999


Q ss_pred             EEEeccCCCCCCce---------e-EeecCC--------C---------------------------cceeEEEEccCCC
Q 026679           79 KLFDSRSYDKGPFD---------T-FLVGGD--------T---------------------------AEVCDIKFSNDGK  113 (235)
Q Consensus        79 ~i~d~~~~~~~~~~---------~-~~~~~~--------~---------------------------~~v~~~~~~~~~~  113 (235)
                      ++|++.........         . ......        .                           .....+.+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            99998764431000         0 000000        0                           0011234456667


Q ss_pred             eEEEecCCCcEEEEEcCCCceeee-----------------------------------ec-------------------
Q 026679          114 SMLLTTTNNNIYVLDAYGGEKRCG-----------------------------------FS-------------------  139 (235)
Q Consensus       114 ~l~~~~~d~~i~~~d~~~~~~~~~-----------------------------------~~-------------------  139 (235)
                      .+++++.|+.|++||++..+....                                   ..                   
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            788888889999998764332100                                   00                   


Q ss_pred             -----cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEee
Q 026679          140 -----LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI  212 (235)
Q Consensus       140 -----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~  212 (235)
                           ...+...+++++|+|++++|++|+.||.|++||+++++.+..+..+ ..+..++|+|++.++++++  +.+++|.
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence                 0112245778999999999999999999999999999998888643 3455678899999998876  5577776


Q ss_pred             CC
Q 026679          213 PN  214 (235)
Q Consensus       213 ~~  214 (235)
                      .-
T Consensus       321 ~~  322 (342)
T d1yfqa_         321 AI  322 (342)
T ss_dssp             SS
T ss_pred             ee
Confidence            53

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.1e-30  Score=193.60  Aligned_cols=192  Identities=16%  Similarity=0.254  Sum_probs=150.3

Q ss_pred             cccceeEEEeecC-----CCeeEEEeccceEEEEecCcce---------------eeeeee---cc--CCceEEEcCCCC
Q 026679           13 HKERVISLCMSPV-----NDSFMSGSLDHSVRIWDLRVNA---------------CQGILR---LR--GRPTVAFDQQGL   67 (235)
Q Consensus        13 h~~~v~~~~~~~~-----~~~l~s~~~d~~i~vwd~~~~~---------------~~~~~~---~~--~~~~~~~~~~~~   67 (235)
                      +...+..++|.++     +.++++++.||++++|++....               ......   .+  ...+++|+|++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence            4556778888775     3578999999999999974221               001111   11  13458999987 


Q ss_pred             EEEEEecCCeEEEEeccCCCCCCce--eEeecCCCcceeEEEEccCCCeEEEecCCCc---EEEEEcCCCceeeeecc--
Q 026679           68 VFAVAMEAGAIKLFDSRSYDKGPFD--TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN---IYVLDAYGGEKRCGFSL--  140 (235)
Q Consensus        68 ~l~~~~~dg~v~i~d~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---i~~~d~~~~~~~~~~~~--  140 (235)
                      +|++|+.||.|++||+++.+.....  ...+.+|..+|.+++|+|+|++|++++.|+.   |++||+.+++.+..+..  
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~  276 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  276 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccc
Confidence            8899999999999999876531110  1234568899999999999999999998874   99999999887776542  


Q ss_pred             ---------CCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCccee----EEEeecCCCEEEEcc
Q 026679          141 ---------EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA----CLKWAPRRAMFVAAS  205 (235)
Q Consensus       141 ---------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~~~~  205 (235)
                               .+|...|++++|+|++++|++|+.|++|++||+++++++.++.+|...|.    .++|+|++..+++++
T Consensus       277 ~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             ccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence                     25678899999999999999999999999999999999999999988775    588999999887665

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.8e-28  Score=178.89  Aligned_cols=165  Identities=22%  Similarity=0.310  Sum_probs=143.1

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcC---------------
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQ---------------   64 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~---------------   64 (235)
                      ++++.+..+.+|...+.+++|+|++.+|++++.|+.|++|++.+++....+..+...+  +.++|               
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  210 (317)
T d1vyhc1         131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET  210 (317)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-
T ss_pred             ccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeecccccee
Confidence            4566777889999999999999999999999999999999999988887776655433  45544               


Q ss_pred             -----CCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec
Q 026679           65 -----QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS  139 (235)
Q Consensus        65 -----~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  139 (235)
                           .+..+++++.|+.|++||+++++.    ...+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.
T Consensus       211 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  286 (317)
T d1vyhc1         211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMC----LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN  286 (317)
T ss_dssp             ------CCEEEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             eeeccCCceeEeccCCCEEEEEECCCCcE----EEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc
Confidence                 356799999999999999987654    56677899999999999999999999999999999999999887765


Q ss_pred             cCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEE
Q 026679          140 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN  172 (235)
Q Consensus       140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  172 (235)
                      .  |...|++++|+|++++|++|+.||.|++||
T Consensus       287 ~--h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         287 A--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             C--CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             C--CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            4  456799999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.3e-27  Score=176.38  Aligned_cols=159  Identities=28%  Similarity=0.454  Sum_probs=139.3

Q ss_pred             hcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce--EEEcCCCCEEEEEecCCeEEEEeccCCC
Q 026679           10 FKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYD   87 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~   87 (235)
                      ...+...+....+.+.+.++++++.|+.|++||+++++.+..+..|...+  ++|+|++++|++++.||.+++||++...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~  259 (340)
T d1tbga_         180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             ccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc
Confidence            34567788999999999999999999999999999999999998877654  8999999999999999999999998754


Q ss_pred             CCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT  167 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  167 (235)
                      .  ........+...+.+++|+|++++|++++.||.|++||+.+++.+..+.  .|..+|++++|+|++++|++|+.||.
T Consensus       260 ~--~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         260 E--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA--GHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             E--EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             c--ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEeCCCCEEEEEccCCE
Confidence            3  2233345667789999999999999999999999999999999887665  45577999999999999999999999


Q ss_pred             EEEEE
Q 026679          168 LHAWN  172 (235)
Q Consensus       168 i~v~d  172 (235)
                      |++||
T Consensus       336 v~iWd  340 (340)
T d1tbga_         336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=3.6e-26  Score=170.02  Aligned_cols=189  Identities=13%  Similarity=0.020  Sum_probs=153.5

Q ss_pred             eEEEeec-CCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCC--eEEEEeccCCCCCCceeE
Q 026679           18 ISLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAG--AIKLFDSRSYDKGPFDTF   94 (235)
Q Consensus        18 ~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~   94 (235)
                      ..-.||| ||+++|+++. |.|++||++.+..++.........++|+|+|+.|++++.+.  .+++||.++++     ..
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-----~~   79 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-----AE   79 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-----EE
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-----EE
Confidence            3467999 9999998875 79999999888877654333344599999999998877653  79999998765     34


Q ss_pred             eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe----------CC
Q 026679           95 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG----------SG  164 (235)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----------~~  164 (235)
                      .+..|...+.+++|+|++++|++++.++.+++|++.+++....+..+  ...+.+++|+|+|++|+.+          ..
T Consensus        80 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~  157 (360)
T d1k32a3          80 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR--EAMITDFTISDNSRFIAYGFPLKHGETDGYV  157 (360)
T ss_dssp             ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--SSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred             EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecc--cccccchhhccceeeeeeeccccccceeecc
Confidence            56678899999999999999999999999999999998887766544  3558889999999999854          34


Q ss_pred             CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCC
Q 026679          165 DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP  215 (235)
Q Consensus       165 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~  215 (235)
                      ++.+++||+.+++..... .+...+..+.|+|+|++|++++  +.+.+|+...
T Consensus       158 ~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         158 MQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             EEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ccceeeeccccCceeeec-ccccccccccccCCCCEEEEEeCCCceEcccccc
Confidence            567999999887765444 4667889999999999999887  6688888654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=2.4e-26  Score=171.02  Aligned_cols=155  Identities=14%  Similarity=0.070  Sum_probs=124.0

Q ss_pred             ccccceeEEEeecCCCeeEEEeccc--eEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccCCCC
Q 026679           12 GHKERVISLCMSPVNDSFMSGSLDH--SVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK   88 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~   88 (235)
                      +|...|.+++|+|||++|++++.+.  .|++||.++++......... ...++|+|++++|++++.++.+++|+..+.+.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  119 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP  119 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccce
Confidence            6899999999999999988776553  79999998877655443332 23499999999999999999999999988664


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEec----------CCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT----------TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                          ......+...+.+++|+|+|++|+.+.          .++.+++||+.+++.....   .+...+..++|+|+|++
T Consensus       120 ----~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~---~~~~~~~~~~~spdg~~  192 (360)
T d1k32a3         120 ----TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT---TENSHDYAPAFDADSKN  192 (360)
T ss_dssp             ----EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS---CSSSBEEEEEECTTSCE
T ss_pred             ----eeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec---ccccccccccccCCCCE
Confidence                555667788899999999999998653          3456999999888765432   33355788899999999


Q ss_pred             EEEeCCCCcEEEEEc
Q 026679          159 VVSGSGDGTLHAWNI  173 (235)
Q Consensus       159 l~~~~~dg~i~v~d~  173 (235)
                      |++++.++.+.+||.
T Consensus       193 l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         193 LYYLSYRSLDPSPDR  207 (360)
T ss_dssp             EEEEESCCCCCEECS
T ss_pred             EEEEeCCCceEcccc
Confidence            999988888888874

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=3.6e-26  Score=166.32  Aligned_cols=159  Identities=14%  Similarity=0.147  Sum_probs=125.8

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeee-eeccC--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCC
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGI-LRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP   90 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~   90 (235)
                      ...+.+++|+|++++|++|+.|+.|++||+++++.... ...+.  ...++|+|+++++++++.|+.+++||+.+.... 
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-  214 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL-  214 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            34678899999999999999999999999987765443 22333  344999999999999999999999999875431 


Q ss_pred             ceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCC-CcceeeEEeCCCcEEEEeCCCCcEE
Q 026679           91 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-NTNTEATFTPDGQYVVSGSGDGTLH  169 (235)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~  169 (235)
                      ........|...|++++|+|++++|++++.|+.|++||++++..........+. ..+.++ +++++++|++++.|+.|+
T Consensus       215 ~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~  293 (299)
T d1nr0a2         215 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIK  293 (299)
T ss_dssp             SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEE
Confidence            112345568899999999999999999999999999999987655444444433 445555 456678999999999999


Q ss_pred             EEEcC
Q 026679          170 AWNIN  174 (235)
Q Consensus       170 v~d~~  174 (235)
                      +||+.
T Consensus       294 iWdl~  298 (299)
T d1nr0a2         294 FWNVP  298 (299)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            99973

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=8.4e-25  Score=166.87  Aligned_cols=218  Identities=9%  Similarity=0.029  Sum_probs=152.6

Q ss_pred             CchhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeee--ccCCc-----eEEEcCCCCEEEEE-
Q 026679            1 MYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILR--LRGRP-----TVAFDQQGLVFAVA-   72 (235)
Q Consensus         1 l~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~-----~~~~~~~~~~l~~~-   72 (235)
                      +++++++.+++.|. .+..++|+|||++|++++.|++|++||+.+++......  .....     .++|+|||++++++ 
T Consensus        49 ~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~  127 (426)
T d1hzua2          49 GDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA  127 (426)
T ss_dssp             TTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEee
Confidence            35788889998875 58999999999999999999999999999887554332  22111     25677899987555 


Q ss_pred             ecCCeEEEEeccCCCCCCc-------------------e--------------------------------eEeecCCCc
Q 026679           73 MEAGAIKLFDSRSYDKGPF-------------------D--------------------------------TFLVGGDTA  101 (235)
Q Consensus        73 ~~dg~v~i~d~~~~~~~~~-------------------~--------------------------------~~~~~~~~~  101 (235)
                      ..++.+.+||..+......                   .                                ......+..
T Consensus       128 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  207 (426)
T d1hzua2         128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP  207 (426)
T ss_dssp             EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCS
T ss_pred             cCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCC
Confidence            5789999999876431000                   0                                000112234


Q ss_pred             ceeEEEEccCCCeEEEecC-CCcEEEEEcCCCceeeee------------------------------------------
Q 026679          102 EVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGF------------------------------------------  138 (235)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~------------------------------------------  138 (235)
                      .+..+.|+|++++++++.. +..+.+++..+++.....                                          
T Consensus       208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~  287 (426)
T d1hzua2         208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN  287 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred             ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc
Confidence            4567899999988777654 555777776655432211                                          


Q ss_pred             ----------ccCCCCCcceeeEEeCCCcEEEE-------eCCCCcEEEEEcCCCceeeee---------cCCCcceeEE
Q 026679          139 ----------SLEPSPNTNTEATFTPDGQYVVS-------GSGDGTLHAWNINTRNEVACW---------NGNIGVVACL  192 (235)
Q Consensus       139 ----------~~~~~~~~i~~~~~~~~~~~l~~-------~~~dg~i~v~d~~~~~~~~~~---------~~~~~~v~~~  192 (235)
                                .+..|...+..++|+|++++|++       +..+++|+|||+.+++...++         ..|...+..+
T Consensus       288 ~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~  367 (426)
T d1hzua2         288 HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP  367 (426)
T ss_dssp             CTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEE
T ss_pred             cccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEE
Confidence                      11233455788999999999995       445789999999998876554         2345678999


Q ss_pred             EeecCCCEEEEc-----c--cceEEeeCCCCCCC
Q 026679          193 KWAPRRAMFVAA-----S--SVLSFWIPNPSSNS  219 (235)
Q Consensus       193 ~~~~~~~~l~~~-----~--~~i~iw~~~~~~~~  219 (235)
                      +|+|||++++.+     +  +.|+|||.++.++.
T Consensus       368 ~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         368 EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             EECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             EECCCCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence            999999977432     1  56999999887644

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-24  Score=159.07  Aligned_cols=163  Identities=20%  Similarity=0.275  Sum_probs=132.4

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEec
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      ++.+..+.+|...+..+.  +++.++++++.||.|++||++.++.+..+..+...+.++++++++|++++.||.|++||+
T Consensus       167 ~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~  244 (342)
T d2ovrb2         167 ETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI  244 (342)
T ss_dssp             TEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEec
Confidence            445566777877666554  467899999999999999999999999999888888778888899999999999999999


Q ss_pred             cCCCCCCceeEee---cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc---CCCCCcceeeEEeCCCc
Q 026679           84 RSYDKGPFDTFLV---GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL---EPSPNTNTEATFTPDGQ  157 (235)
Q Consensus        84 ~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~  157 (235)
                      ...+.    ...+   ..|...+.++.+  +++++++++.||.|++||+++++.+..+..   ..+...|.+++|+|++.
T Consensus       245 ~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~  318 (342)
T d2ovrb2         245 KTGQC----LQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL  318 (342)
T ss_dssp             TTCCE----EEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             ccccc----cccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC
Confidence            87653    2222   234556666655  457899999999999999999998876643   23556799999999999


Q ss_pred             EEEEeCCCCc----EEEEEcC
Q 026679          158 YVVSGSGDGT----LHAWNIN  174 (235)
Q Consensus       158 ~l~~~~~dg~----i~v~d~~  174 (235)
                      +|++|+.||+    |++||+.
T Consensus       319 ~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         319 VCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEEECSSSSSCCEEEEEECC
T ss_pred             EEEEEeCCCCCeeEEEEEeCC
Confidence            9999999885    9999985

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=2.5e-22  Score=145.58  Aligned_cols=210  Identities=15%  Similarity=0.137  Sum_probs=154.6

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCee-EEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEE-EecCCeE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAV-AMEAGAI   78 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~-~~~dg~v   78 (235)
                      ++++.+++++.. .....++|+|+|++| ++++.++.|++||+.+++.+..+..+.... +++++++..+++ +..++.+
T Consensus        20 ~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (301)
T d1l0qa2          20 TSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTL   98 (301)
T ss_dssp             TTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccccccccccccccee
Confidence            567777777654 456899999999977 567789999999999999998888766544 899999986655 4567899


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEE-ecCCCcEEEEEcCCCceeeeeccCC---------------
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TTTNNNIYVLDAYGGEKRCGFSLEP---------------  142 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~---------------  142 (235)
                      .+|+..+.+.    .... .+.....++.|+|+++.++. +..++.+.+|+..+......+....               
T Consensus        99 ~~~~~~~~~~----~~~~-~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (301)
T d1l0qa2          99 SVIDTTSNTV----AGTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVY  173 (301)
T ss_dssp             EEEETTTTEE----EEEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred             eeccccccee----eeec-cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeecccccee
Confidence            9999887543    2222 33456778999999987754 4557788899987765544322110               


Q ss_pred             ------------------------CCCcceeeEEeCCCcEEEEeC---CCCcEEEEEcCCCceeeeecCCCcceeEEEee
Q 026679          143 ------------------------SPNTNTEATFTPDGQYVVSGS---GDGTLHAWNINTRNEVACWNGNIGVVACLKWA  195 (235)
Q Consensus       143 ------------------------~~~~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~  195 (235)
                                              ....+..++|+++++.++.+.   .++.|++||+.+++.+..+..+ ..+.+++|+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~s  252 (301)
T d1l0qa2         174 VANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVT  252 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEEC
T ss_pred             eecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEe
Confidence                                    012345677888888776543   4568999999999988887644 567999999


Q ss_pred             cCCCEEE-Ecc--cceEEeeCCCCCC
Q 026679          196 PRRAMFV-AAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       196 ~~~~~l~-~~~--~~i~iw~~~~~~~  218 (235)
                      |||++|+ +++  +.|++||+++.+.
T Consensus       253 pdg~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         253 PDGKKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCeE
Confidence            9999874 544  7799999987653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=8.7e-23  Score=155.74  Aligned_cols=196  Identities=9%  Similarity=-0.070  Sum_probs=149.0

Q ss_pred             eecCCCeeEEEeccceEEEEecCcceeeeeeeccCCc-eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEe-ecCC
Q 026679           22 MSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP-TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL-VGGD   99 (235)
Q Consensus        22 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~   99 (235)
                      .+++.-++++.+.||+|.+||..+++.+..+..+... .++|+|||+++++++.|+.+.+||+.+.+........ ...|
T Consensus        28 ~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          28 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence            3333334689999999999999999999999877543 3999999999999999999999999887643222222 2244


Q ss_pred             CcceeEEEEccCCCeE-EEecCCCcEEEEEcCCCceeeeeccCC---------CCCcceeeEEeCCCcEE-EEeCCCCcE
Q 026679          100 TAEVCDIKFSNDGKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEP---------SPNTNTEATFTPDGQYV-VSGSGDGTL  168 (235)
Q Consensus       100 ~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l-~~~~~dg~i  168 (235)
                      ...+.+..|+|||++| +++..++.|++||..+++.+..+..+.         .......+.++|+|..+ ++...++.|
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            5566677788999986 567779999999999998877655322         12345568899998876 566778999


Q ss_pred             EEEEcCCCceeeeec-CCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCC
Q 026679          169 HAWNINTRNEVACWN-GNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS  217 (235)
Q Consensus       169 ~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~  217 (235)
                      .+||..+++...... .+...+..++|+|+|+++++++   +.+.+++.+..+
T Consensus       188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence            999998877554332 2456788999999999988886   558888887654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=5.1e-22  Score=145.99  Aligned_cols=207  Identities=9%  Similarity=0.069  Sum_probs=152.8

Q ss_pred             chhhhhhhhccc--ccceeEEEeecCCCee-EEEeccceEEEEecCcceeeeeeeccC-------CceEEEcCCCCEEEE
Q 026679            2 YDNRILRYFKGH--KERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILRLRG-------RPTVAFDQQGLVFAV   71 (235)
Q Consensus         2 ~~~~~~~~~~~h--~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~   71 (235)
                      +++++++.+..+  ...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+.       ...++++|+++.+++
T Consensus        19 ~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~   98 (337)
T d1pbyb_          19 EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI   98 (337)
T ss_dssp             TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred             CCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEE
Confidence            456777777653  4567899999999987 566789999999999999888776543       224899999999988


Q ss_pred             Eec------------CCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec
Q 026679           72 AME------------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS  139 (235)
Q Consensus        72 ~~~------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  139 (235)
                      +..            +..+.+||..+...    .... .....+..++|+|+|+++++++.+  +.+||..+++....+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~-~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~  171 (337)
T d1pbyb_          99 YESPVRLELTHFEVQPTRVALYDAETLSR----RKAF-EAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKP  171 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEE----EEEE-ECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEEC
T ss_pred             eecCCcceeeeccccccceeeccccCCeE----EEec-cccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEee
Confidence            764            56788888887553    2222 234567889999999999988654  6778887665443322


Q ss_pred             cC----------------------------------------------------------------CCCCcceeeEEeCC
Q 026679          140 LE----------------------------------------------------------------PSPNTNTEATFTPD  155 (235)
Q Consensus       140 ~~----------------------------------------------------------------~~~~~i~~~~~~~~  155 (235)
                      ..                                                                .+......+.++|+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (337)
T d1pbyb_         172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA  251 (337)
T ss_dssp             STTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT
T ss_pred             cCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEeccc
Confidence            11                                                                01122334556667


Q ss_pred             CcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          156 GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       156 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                      +.+++.+  ++.|++||+.+++.+..+. +...+.+++|+|||++|++++  ++|++||.++.+.
T Consensus       252 ~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         252 KTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             SSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             ceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE
Confidence            7776655  5789999999999988876 567789999999999998887  7899999987543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-22  Score=146.60  Aligned_cols=161  Identities=21%  Similarity=0.276  Sum_probs=116.3

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec---------------------------
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL---------------------------   54 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---------------------------   54 (235)
                      +++++++.+++|.++|++++|  ++++|++|+.|+.|++|++..+........                           
T Consensus        43 ~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (293)
T d1p22a2          43 NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW  120 (293)
T ss_dssp             SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEe
Confidence            567888999999999999987  468999999999999999764322211100                           


Q ss_pred             --------------------------------------------------------cCCceEEEcCCCCEEEEEecCCeE
Q 026679           55 --------------------------------------------------------RGRPTVAFDQQGLVFAVAMEAGAI   78 (235)
Q Consensus        55 --------------------------------------------------------~~~~~~~~~~~~~~l~~~~~dg~v   78 (235)
                                                                              +...+..+.+++..+++++.||.|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i  200 (293)
T d1p22a2         121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTI  200 (293)
T ss_dssp             ECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCE
T ss_pred             eccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEE
Confidence                                                                    011112334456678888888888


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCce-------eeeeccCCCCCcceeeE
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-------RCGFSLEPSPNTNTEAT  151 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~i~~~~  151 (235)
                      ++||+++...    ......+...+..  +++++.+|++++.||.|++||+.....       .....+..|...|.+++
T Consensus       201 ~i~d~~~~~~----~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~  274 (293)
T d1p22a2         201 RLWDIECGAC----LRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ  274 (293)
T ss_dssp             EEEETTTCCE----EEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE
T ss_pred             EEEeccccee----eeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEE
Confidence            8888877553    4455566666654  566788999999999999999754221       11223345667799998


Q ss_pred             EeCCCcEEEEeCCCCcEEEEE
Q 026679          152 FTPDGQYVVSGSGDGTLHAWN  172 (235)
Q Consensus       152 ~~~~~~~l~~~~~dg~i~v~d  172 (235)
                      |  ++++|++++.||.|++||
T Consensus       275 ~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         275 F--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             E--CSSCEEECCSSSEEEEEC
T ss_pred             E--cCCEEEEEecCCEEEEeC
Confidence            8  457899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4.7e-22  Score=143.55  Aligned_cols=150  Identities=15%  Similarity=0.178  Sum_probs=116.4

Q ss_pred             EEEeecCCCeeEEEeccc-eEEEEecCcceeeeeeec-cC--CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE
Q 026679           19 SLCMSPVNDSFMSGSLDH-SVRIWDLRVNACQGILRL-RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF   94 (235)
Q Consensus        19 ~~~~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~   94 (235)
                      ..+++++++.+++++.|+ .+++|++...+....+.. +.  ..+++|+|++.+|++|+.||.|++||+.+...   ...
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~---~~~  199 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV---KTS  199 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EEC
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccc---ccc
Confidence            345677788888777765 799999877665554433 22  33489999999999999999999999987542   223


Q ss_pred             eecCCCcceeEEEEccC----------CCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679           95 LVGGDTAEVCDIKFSND----------GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus        95 ~~~~~~~~v~~~~~~~~----------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                      ....|...|.+++|+|.          +.++++++.|+.|++||++.+..... ....|...|++++|+|++ .|++++.
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~-~~~~h~~~V~~v~~~~~~-~l~s~g~  277 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK-ALNAHKDGVNNLLWETPS-TLVSSGA  277 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE-ETTSSTTCEEEEEEEETT-EEEEEET
T ss_pred             cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEE-EeCCCCCCeEEEEECCCC-EEEEEEC
Confidence            45678899999999874          46899999999999999977443222 334677789999999986 5788999


Q ss_pred             CCcEEEEEc
Q 026679          165 DGTLHAWNI  173 (235)
Q Consensus       165 dg~i~v~d~  173 (235)
                      |+.|++|++
T Consensus       278 D~~v~iW~i  286 (287)
T d1pgua2         278 DACIKRWNV  286 (287)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=7.4e-22  Score=150.44  Aligned_cols=198  Identities=8%  Similarity=-0.008  Sum_probs=140.4

Q ss_pred             EeecCC--CeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEe-e
Q 026679           21 CMSPVN--DSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL-V   96 (235)
Q Consensus        21 ~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~   96 (235)
                      .++.+.  -++++.+.||+|++||+.+++.+..+..+.... ++|+|||+++++++.|+.+++||+.+.+........ .
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence            354543  346788899999999999999999998775444 999999999999999999999999987652222111 2


Q ss_pred             cCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcCCCceeeeeccC----------------------------------
Q 026679           97 GGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLE----------------------------------  141 (235)
Q Consensus        97 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~----------------------------------  141 (235)
                      .+|...+.+++|+|||++++++ ..++.+.+||..+++.......+                                  
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~  184 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  184 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence            2455566778889999987655 47899999998876543322100                                  


Q ss_pred             -------------------CCCCcceeeEEeCCCcEEEEeC-CCCcEEEEEcCCC-------------------------
Q 026679          142 -------------------PSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTR-------------------------  176 (235)
Q Consensus       142 -------------------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~-------------------------  176 (235)
                                         .+...+..+.|+|++++++++. .+..+.+++..++                         
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (426)
T d1hzua2         185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY  264 (426)
T ss_dssp             TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTT
T ss_pred             CeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCC
Confidence                               0112345678889888776654 3344555554432                         


Q ss_pred             -----------------------------ceeeeecCCCcceeEEEeecCCCEEEEc-------c--cceEEeeCCCCCC
Q 026679          177 -----------------------------NEVACWNGNIGVVACLKWAPRRAMFVAA-------S--SVLSFWIPNPSSN  218 (235)
Q Consensus       177 -----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------~--~~i~iw~~~~~~~  218 (235)
                                                   +....+.+|...+..++|+|++++|++.       +  ++++|||+++.+.
T Consensus       265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~  344 (426)
T d1hzua2         265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA  344 (426)
T ss_dssp             EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             CceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCc
Confidence                                         2334456777789999999999999952       2  6799999977653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.6e-21  Score=142.93  Aligned_cols=170  Identities=11%  Similarity=0.131  Sum_probs=119.1

Q ss_pred             eeeeeeccCCc--eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCC-CeEEEecCCCcE
Q 026679           48 CQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNI  124 (235)
Q Consensus        48 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i  124 (235)
                      .++..+.|...  .++|+|++++|++|+.||+|++||++...... .......|..+|.+++|+|++ .+|++|+.|+.|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~-~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce-EEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            34445566544  49999999999999999999999998765322 223334688999999999864 578899999999


Q ss_pred             EEEEcCCCceeeeeccCCC-----------------------------------------------CCcceeeEEeCCCc
Q 026679          125 YVLDAYGGEKRCGFSLEPS-----------------------------------------------PNTNTEATFTPDGQ  157 (235)
Q Consensus       125 ~~~d~~~~~~~~~~~~~~~-----------------------------------------------~~~i~~~~~~~~~~  157 (235)
                      ++|++..............                                               ........+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            9999876543322211100                                               11122344566777


Q ss_pred             EEEEeCCCCcEEEEEcCCCceeee--------------------------------------------------------
Q 026679          158 YVVSGSGDGTLHAWNINTRNEVAC--------------------------------------------------------  181 (235)
Q Consensus       158 ~l~~~~~dg~i~v~d~~~~~~~~~--------------------------------------------------------  181 (235)
                      .+++++.|+.|++||++..+....                                                        
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            788888888888888754321000                                                        


Q ss_pred             -----ecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCC
Q 026679          182 -----WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       182 -----~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~  218 (235)
                           ...|...+.+++|+|++.+|++|+  |.|++||+++.+.
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~  285 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK  285 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcE
Confidence                 012344678999999999999998  7899999987643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=6.3e-21  Score=140.57  Aligned_cols=194  Identities=11%  Similarity=0.118  Sum_probs=132.6

Q ss_pred             EEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC---CceEEEcCCCCEEEE-EecCCeEEEEeccCCCCCCceeEe
Q 026679           20 LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLVFAV-AMEAGAIKLFDSRSYDKGPFDTFL   95 (235)
Q Consensus        20 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~   95 (235)
                      ++|++++++|++++.|++|.+||+++++.+..++.+.   ...++|+|||+++++ +..++.|.+||+.+++..  ....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~--~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT--FHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--EEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeee--eeec
Confidence            5789999999999999999999999999999887532   235999999998754 557899999999886531  1111


Q ss_pred             ecC----CCcceeEEEEccCCCeEEEec------------CCCcEEEEEcCCCc--------------------------
Q 026679           96 VGG----DTAEVCDIKFSNDGKSMLLTT------------TNNNIYVLDAYGGE--------------------------  133 (235)
Q Consensus        96 ~~~----~~~~v~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~--------------------------  133 (235)
                      ...    +...+..++|+|||++++++.            .+..+.+||..+++                          
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence            111    112356788999998887654            24556666553322                          


Q ss_pred             ---------------eeeeeccCC--------------------------------------------------------
Q 026679          134 ---------------KRCGFSLEP--------------------------------------------------------  142 (235)
Q Consensus       134 ---------------~~~~~~~~~--------------------------------------------------------  142 (235)
                                     ....+....                                                        
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (346)
T d1jmxb_         160 VAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT  239 (346)
T ss_dssp             EESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred             EeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCC
Confidence                           111111000                                                        


Q ss_pred             ----------CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEE
Q 026679          143 ----------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSF  210 (235)
Q Consensus       143 ----------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~i  210 (235)
                                +...+..+.+++++.+++... ++.|.+||..+++.+..+. +...+.+++|+|||++|++++  +.|++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v  317 (346)
T d1jmxb_         240 GKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAV  317 (346)
T ss_dssp             CCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEE
T ss_pred             CceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence                      001122233444444444443 3578999999998887776 446799999999999999987  88999


Q ss_pred             eeCCCCC
Q 026679          211 WIPNPSS  217 (235)
Q Consensus       211 w~~~~~~  217 (235)
                      ||.++.+
T Consensus       318 ~D~~t~~  324 (346)
T d1jmxb_         318 FNPDTLE  324 (346)
T ss_dssp             EETTTTE
T ss_pred             EECccCC
Confidence            9998754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=4.2e-19  Score=135.22  Aligned_cols=212  Identities=10%  Similarity=0.045  Sum_probs=143.8

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEeccceEEEEecCcceee--eeeeccCCc-e----EEEcCCCCEE-EEEe
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQ--GILRLRGRP-T----VAFDQQGLVF-AVAM   73 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~-~----~~~~~~~~~l-~~~~   73 (235)
                      +++++++.++.|. .+..++|+|||+++++++.|+++++||+.+++..  ..++..... .    .+|+|||++| +++.
T Consensus        50 ~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~  128 (432)
T d1qksa2          50 STYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY  128 (432)
T ss_dssp             TTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             CCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC
Confidence            5778888998874 6899999999999999999999999999887643  333322211 1    4567899976 6778


Q ss_pred             cCCeEEEEeccCCCCCCceeE-------eecCCCcceeEEEEccCCCeEE-EecCCCcEEEEEcCCCceeeeeccCCCCC
Q 026679           74 EAGAIKLFDSRSYDKGPFDTF-------LVGGDTAEVCDIKFSNDGKSML-LTTTNNNIYVLDAYGGEKRCGFSLEPSPN  145 (235)
Q Consensus        74 ~dg~v~i~d~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  145 (235)
                      .++.+++||..+++.......       ....+......+.++|++..++ +...++.|.+||..+.+.......... .
T Consensus       129 ~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-~  207 (432)
T d1qksa2         129 WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-R  207 (432)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-S
T ss_pred             CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEccc-C
Confidence            899999999988664111000       0012334566788999988764 556689999999988776554443322 3


Q ss_pred             cceeeEEeCCCcEEEEeCC-CCcEEEEEcCCCceeeeecC-----CCcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          146 TNTEATFTPDGQYVVSGSG-DGTLHAWNINTRNEVACWNG-----NIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                      .+..++|+|+|+++++++. ++.+.++|..+++.+..+..     |........+...+....+..   +.+.+|....
T Consensus       208 ~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         208 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccc
Confidence            4788999999998876654 56799999988777655431     223333344444444444432   4577776544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=1.5e-18  Score=127.20  Aligned_cols=183  Identities=13%  Similarity=0.086  Sum_probs=137.2

Q ss_pred             CeeEEEeccceEEEEecCcceeeeeeeccC----CceEEEcCCCCEEE-EEecCCeEEEEeccCCCCCCceeEeecCC--
Q 026679           27 DSFMSGSLDHSVRIWDLRVNACQGILRLRG----RPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLVGGD--   99 (235)
Q Consensus        27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~~~~--   99 (235)
                      +++++++.|++|++||+++++.+..+..+.    ...++++|||++++ +++.++.|.+||+.+++.    ......+  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~----~~~~~~~~~   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET----LGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE----EEEEECCBT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE----EEEEecCCC
Confidence            579999999999999999999999887543    23499999999874 567799999999998764    2222222  


Q ss_pred             ---CcceeEEEEccCCCeEEEecC------------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC
Q 026679          100 ---TAEVCDIKFSNDGKSMLLTTT------------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus       100 ---~~~v~~~~~~~~~~~l~~~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  164 (235)
                         ...+..++|+|++++++++..            +..+.+||..+++....+...   ..+..++|+|+|+++++++.
T Consensus        78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~  154 (337)
T d1pbyb_          78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGLGR  154 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEESS
T ss_pred             cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc---CCceEEEEcCCCCEEEEEcC
Confidence               234557899999999887753            577999999999887776644   34778999999999998875


Q ss_pred             CCcEEEEEcCCCceeeee--------------------------------------------------------------
Q 026679          165 DGTLHAWNINTRNEVACW--------------------------------------------------------------  182 (235)
Q Consensus       165 dg~i~v~d~~~~~~~~~~--------------------------------------------------------------  182 (235)
                      +  +.+||..+++....+                                                              
T Consensus       155 ~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (337)
T d1pbyb_         155 D--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             S--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             C--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEE
Confidence            5  667887655332221                                                              


Q ss_pred             ----cCCCcceeEEEeecCCCEEEEcccceEEeeCCCCCC
Q 026679          183 ----NGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSN  218 (235)
Q Consensus       183 ----~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~~  218 (235)
                          ..+...+..+.++|++.+++.+++.+++||+.+.+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~  272 (337)
T d1pbyb_         233 MREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNAS  272 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEE
T ss_pred             EEEecCCCcceEEEEecccceEEEEccccEEEEECCCCcE
Confidence                112234456677888888888889999999987653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.3e-18  Score=127.57  Aligned_cols=202  Identities=12%  Similarity=0.113  Sum_probs=133.4

Q ss_pred             ccccceeEEEeecCCCeeEEE-eccceEEEEecCcceeeee----eeccC-CceEEEcCCCCEEEEEec-CCeEEEEecc
Q 026679           12 GHKERVISLCMSPVNDSFMSG-SLDHSVRIWDLRVNACQGI----LRLRG-RPTVAFDQQGLVFAVAME-AGAIKLFDSR   84 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~----~~~~~-~~~~~~~~~~~~l~~~~~-dg~v~i~d~~   84 (235)
                      .|.+.+..|+|+|||++|+++ ..|+.|++|++........    ..... ...++|+|+|+++++++. ++.+.+|+..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            577889999999999988555 4589999999976543222    22222 334999999999998875 6789999877


Q ss_pred             CCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCCCceeeee-------------------------
Q 026679           85 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGF-------------------------  138 (235)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~-------------------------  138 (235)
                      ....  ........+...+.++.++|++++++.++. +..|.+|+..........                         
T Consensus       114 ~~~~--~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~  191 (333)
T d1ri6a_         114 DGLP--VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  191 (333)
T ss_dssp             TTEE--EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             cccc--eecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeE
Confidence            6432  122333455566778888998887776654 455777776432111000                         


Q ss_pred             -------------c-------------------cCCCCCcceeeEEeCCCcEEEE-eCCCCcEEEEEcCCCceeeeec--
Q 026679          139 -------------S-------------------LEPSPNTNTEATFTPDGQYVVS-GSGDGTLHAWNINTRNEVACWN--  183 (235)
Q Consensus       139 -------------~-------------------~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~v~d~~~~~~~~~~~--  183 (235)
                                   .                   ..........+++++++++++. +..++.+.+|++..........  
T Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (333)
T d1ri6a_         192 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF  271 (333)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred             EeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEE
Confidence                         0                   0001123345678888886654 4567789999887554333322  


Q ss_pred             -CCCcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          184 -GNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       184 -~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                       .....+.+++|+|||++|++++   +.|++|+++.
T Consensus       272 ~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         272 QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             eCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence             2345678999999999987775   6699996643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.82  E-value=1.1e-17  Score=120.80  Aligned_cols=179  Identities=13%  Similarity=0.210  Sum_probs=139.9

Q ss_pred             eEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEE-EEecCCeEEEEeccCCCCCCceeEeecCCCcceeEE
Q 026679           29 FMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI  106 (235)
Q Consensus        29 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~  106 (235)
                      .++++.|++|.+||+++++.+..+.....+. ++++|+|++++ ++..++.|.+||+.+.+.    ...+..+ ..+..+
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~----~~~~~~~-~~~~~~   79 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV----IATVPAG-SSPQGV   79 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE----EEEEECS-SSEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce----eeeeecc-cccccc
Confidence            3467789999999999999999988766544 99999999875 566789999999988653    3333333 356889


Q ss_pred             EEccCCCeEEE-ecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE-EeCCCCcEEEEEcCCCceeeeecC
Q 026679          107 KFSNDGKSMLL-TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNINTRNEVACWNG  184 (235)
Q Consensus       107 ~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~  184 (235)
                      +|++++..+++ +..++.+.+|+..+++....+...   .....+.|+|+++.++ ++..++.+.+|+..+++.+..+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (301)
T d1l0qa2          80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG---KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV  156 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ccccccccccccccccceeeecccccceeeeecccc---ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc
Confidence            99999986655 556788999999998877766544   3467899999998875 556688899999999998888775


Q ss_pred             CCcceeEEEeecCCCEEEEcc---cceEEeeCCCC
Q 026679          185 NIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS  216 (235)
Q Consensus       185 ~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~  216 (235)
                      + ..+..+.++|++..+++++   +.+.+|+....
T Consensus       157 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (301)
T d1l0qa2         157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (301)
T ss_dssp             C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             C-CCceEEEeeccccceeeecccccccccccccce
Confidence            4 5578899999999888776   44667766544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=3.5e-18  Score=126.47  Aligned_cols=214  Identities=10%  Similarity=0.066  Sum_probs=144.7

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEE----------eccceEEEEecCcceeeeeeeccCC---------ceEEE
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSG----------SLDHSVRIWDLRVNACQGILRLRGR---------PTVAF   62 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----------~~d~~i~vwd~~~~~~~~~~~~~~~---------~~~~~   62 (235)
                      .+++++..+..+..  ..++|+|||++|++.          ..|+.|++||..+++....+..+..         ..++|
T Consensus        36 ~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (355)
T d2bbkh_          36 EAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL  113 (355)
T ss_dssp             TTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred             CCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEE
Confidence            45666666665543  478999999988764          4578999999999988877654321         23899


Q ss_pred             cCCCCEEEEEe--cCCeEEEEeccCCCCCCcee---------------Eee--------------------------cCC
Q 026679           63 DQQGLVFAVAM--EAGAIKLFDSRSYDKGPFDT---------------FLV--------------------------GGD   99 (235)
Q Consensus        63 ~~~~~~l~~~~--~dg~v~i~d~~~~~~~~~~~---------------~~~--------------------------~~~   99 (235)
                      +|+++.++++.  .+..+.+|+..+.+......               ...                          ..+
T Consensus       114 s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~  193 (355)
T d2bbkh_         114 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED  193 (355)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred             ecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccccee
Confidence            99999888775  45678888887643210000               000                          001


Q ss_pred             CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCC----------CCcceeeEEeCCCcEEEEeCCC----
Q 026679          100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS----------PNTNTEATFTPDGQYVVSGSGD----  165 (235)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~d----  165 (235)
                      ...+....+.+++..++.++.++.+++|++..++.........+          +.....++++|++..++....+    
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~  273 (355)
T d2bbkh_         194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW  273 (355)
T ss_dssp             SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCce
Confidence            11233445666667788888899999999987754322111111          1223458899999988765432    


Q ss_pred             ------CcEEEEEcCCCceeeeecCCCcceeEEEeecCCCE--EEEcc--cceEEeeCCCCCC
Q 026679          166 ------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM--FVAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       166 ------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~--~~i~iw~~~~~~~  218 (235)
                            ..|.+||..+++.+..+. +...+.+++|+|||+.  +++++  +.|++||.++.+.
T Consensus       274 ~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         274 RHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             eecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence                  469999999999888876 4466899999999973  34444  7799999987764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=5e-18  Score=124.81  Aligned_cols=183  Identities=14%  Similarity=0.022  Sum_probs=128.8

Q ss_pred             Cchhhhhhhhc-ccccceeEEEeecCCCee-EEEeccceEEEEecCcceeeeeeeccC--------CceEEEcCCCCEEE
Q 026679            1 MYDNRILRYFK-GHKERVISLCMSPVNDSF-MSGSLDHSVRIWDLRVNACQGILRLRG--------RPTVAFDQQGLVFA   70 (235)
Q Consensus         1 l~~~~~~~~~~-~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~   70 (235)
                      +++++++++++ .|...+.+++|+|||+++ ++++.++.|++||+.+++....+....        ...++++|+|+.++
T Consensus        25 ~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~  104 (346)
T d1jmxb_          25 VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY  104 (346)
T ss_dssp             TTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred             CCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEE
Confidence            35677888877 456678899999999886 556678999999999998887765432        22388899998877


Q ss_pred             EEe------------cCCeEEEEeccCCCCCC---------------------------------------c--------
Q 026679           71 VAM------------EAGAIKLFDSRSYDKGP---------------------------------------F--------   91 (235)
Q Consensus        71 ~~~------------~dg~v~i~d~~~~~~~~---------------------------------------~--------   91 (235)
                      ++.            .++.+.+|+..+.....                                       .        
T Consensus       105 v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (346)
T d1jmxb_         105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW  184 (346)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTC
T ss_pred             EEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCC
Confidence            664            24555666544311000                                       0        


Q ss_pred             ----------------------------------------------------------eeEeecCCCcceeEEEEccCCC
Q 026679           92 ----------------------------------------------------------DTFLVGGDTAEVCDIKFSNDGK  113 (235)
Q Consensus        92 ----------------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~  113 (235)
                                                                                .......+...+..+.+++++.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (346)
T d1jmxb_         185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP  264 (346)
T ss_dssp             CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT
T ss_pred             ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCC
Confidence                                                                      0000011223344556666666


Q ss_pred             eEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCc
Q 026679          114 SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG  187 (235)
Q Consensus       114 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  187 (235)
                      +++... ++.|.+||..+++.+..+...   ..+.+++|+|||++|++++.|+.|++||.++++.+.++..+.+
T Consensus       265 ~~~~~~-~~~v~v~d~~~~~~~~~~~~~---~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         265 NQIYGV-LNRLAKYDLKQRKLIKAANLD---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             TEEEEE-ESEEEEEETTTTEEEEEEECS---SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             EEEEec-CCeEEEEECCCCcEEEEEcCC---CCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence            665544 457999999999888766543   3488999999999999999999999999999999988875543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.1e-16  Score=115.66  Aligned_cols=187  Identities=9%  Similarity=0.129  Sum_probs=132.2

Q ss_pred             eeEEEeccceEEEEecCcce---eeeeeeccC-CceEEEcCCCCEEEEEe-cCCeEEEEeccCCCCCCceeEeecCCCcc
Q 026679           28 SFMSGSLDHSVRIWDLRVNA---CQGILRLRG-RPTVAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAE  102 (235)
Q Consensus        28 ~l~s~~~d~~i~vwd~~~~~---~~~~~~~~~-~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  102 (235)
                      .+++++.|++|++|++....   .++.+.... ...++|+|||++|++++ .|+.|.+|++........ ......+...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~-~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT-FAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE-EEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE-EeeecccCCC
Confidence            45778899999999987643   334444433 34599999999986655 489999999986553211 1222233455


Q ss_pred             eeEEEEccCCCeEEEecC-CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CCcEEEEEcCCCceee
Q 026679          103 VCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRNEVA  180 (235)
Q Consensus       103 v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~  180 (235)
                      +..++|+|||++|++++. ++.+.+|+..............+...+.++.++|++++++.++. +..|.+|+........
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            778999999999988875 67899999887766655555555566888999999998877664 5679999987654322


Q ss_pred             ee------cCCCcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          181 CW------NGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       181 ~~------~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                      ..      .........++|++++.+++...   +...+|++..
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~  208 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  208 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecc
Confidence            11      12334568899999998887664   5577777644

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=2.2e-16  Score=117.47  Aligned_cols=214  Identities=10%  Similarity=0.019  Sum_probs=134.6

Q ss_pred             chhhhhhhhcccccceeEEEeecCCCeeEEEe----------ccceEEEEecCcceeeeeeeccCCc-------------
Q 026679            2 YDNRILRYFKGHKERVISLCMSPVNDSFMSGS----------LDHSVRIWDLRVNACQGILRLRGRP-------------   58 (235)
Q Consensus         2 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~~-------------   58 (235)
                      ++++.+.++..+..+  .++|+|||++|++++          .++.|.+||..+++....+..+...             
T Consensus        55 ~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (373)
T d2madh_          55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN  132 (373)
T ss_pred             CCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE
Confidence            467777777766544  789999999998874          4678999999988766554322110             


Q ss_pred             ------------------------------------eEEEcCCCCE-EEEEecCCeEEEEeccCCCCCCceeEeec--CC
Q 026679           59 ------------------------------------TVAFDQQGLV-FAVAMEAGAIKLFDSRSYDKGPFDTFLVG--GD   99 (235)
Q Consensus        59 ------------------------------------~~~~~~~~~~-l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--~~   99 (235)
                                                          .+.++|+++. +++.+.|+.+.+|+...............  ..
T Consensus       133 s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~  212 (373)
T d2madh_         133 TPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQ  212 (373)
T ss_pred             EeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCc
Confidence                                                1334555543 34556677777777665443211111111  11


Q ss_pred             CcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCC----------CCcceeeEEeCCCcEEE---------
Q 026679          100 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS----------PNTNTEATFTPDGQYVV---------  160 (235)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~---------  160 (235)
                      ........+.+++. ++..+.++.+.+|+...............          +.....++++|++..++         
T Consensus       213 ~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  291 (373)
T d2madh_         213 NLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW  291 (373)
T ss_pred             cceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE
Confidence            11223344555554 55666788899999887654433222111          12234456666666544         


Q ss_pred             -EeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEE--EEcc--cceEEeeCCCCCCC
Q 026679          161 -SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF--VAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       161 -~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~--~~i~iw~~~~~~~~  219 (235)
                       ....++.+.+||..+++.+..+. +...+..++|+|||+.+  ++++  +.+++||..+++..
T Consensus       292 ~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         292 KLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             EeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence             44556789999999999988876 56778999999999853  4444  77999999876653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.72  E-value=3.3e-15  Score=111.07  Aligned_cols=197  Identities=10%  Similarity=-0.049  Sum_probs=143.4

Q ss_pred             hcccccceeEEEeecCCCeeEEE-----eccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEe----------c
Q 026679           10 FKGHKERVISLCMSPVNDSFMSG-----SLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAM----------E   74 (235)
Q Consensus        10 ~~~h~~~v~~~~~~~~~~~l~s~-----~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~   74 (235)
                      ...+..++.+++++|+|+.++..     +.++.|.+||..+++.+..+..+....++|+|||++++++.          .
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCccccccc
Confidence            34688899999999999987754     23467999999999999998887777799999999998875          3


Q ss_pred             CCeEEEEeccCCCCCCceeEeecCCCc-------ceeEEEEccCCCeEEEec--CCCcEEEEEcCCCceeeeeccCCCCC
Q 026679           75 AGAIKLFDSRSYDKGPFDTFLVGGDTA-------EVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPN  145 (235)
Q Consensus        75 dg~v~i~d~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~  145 (235)
                      ++.|.+||..+++.    ......+..       ....+.|+++++.++...  .++.+.+|+....+......      
T Consensus        96 ~~~v~v~D~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------  165 (373)
T d2madh_          96 TDYVEVFDPVTFLP----IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS------  165 (373)
T ss_pred             ceEEEEEECCCCcE----EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec------
Confidence            57899999998764    222222221       124578899988776654  45678899987776554332      


Q ss_pred             cceeeEEeCCCcEE-EEeCCCCcEEEEEcCCCceeeeecCC------CcceeEEEeecCCCEEEEcc-cceEEeeCCCC
Q 026679          146 TNTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEVACWNGN------IGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS  216 (235)
Q Consensus       146 ~i~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~-~~i~iw~~~~~  216 (235)
                      ...++.++|+++.+ ++.+.|+.+.+|+...++.......+      ......+.+.+++.++..+. +.+.+|+....
T Consensus       166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCC
Confidence            24568899998765 67888999999999887776554322      22344566677777776665 77888887654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=1.7e-15  Score=112.76  Aligned_cols=209  Identities=9%  Similarity=-0.063  Sum_probs=130.6

Q ss_pred             hhhhhhhhcccccceeEEEeecCCCeeEEEe----------ccceEEEEecCcceeeeeeeccC---------CceEEEc
Q 026679            3 DNRILRYFKGHKERVISLCMSPVNDSFMSGS----------LDHSVRIWDLRVNACQGILRLRG---------RPTVAFD   63 (235)
Q Consensus         3 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~~---------~~~~~~~   63 (235)
                      +++++..+.++..+  .++|+|||+.|++.+          .|+.|.+||..+++....+..+.         ...++|+
T Consensus        55 ~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S  132 (368)
T d1mdah_          55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC  132 (368)
T ss_dssp             TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred             CCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEEC
Confidence            44555555555443  589999999888754          47889999999998888776432         2238999


Q ss_pred             CCCCEEEEEe-cCCeEEEEeccCCCCCCceeEeecCCC-------cceeEEEEccCCCeEEEe-----------------
Q 026679           64 QQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDT-------AEVCDIKFSNDGKSMLLT-----------------  118 (235)
Q Consensus        64 ~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~-----------------  118 (235)
                      |||++++++. .++.+.+||+.+.+.    ......+.       .....+.+++||+.++..                 
T Consensus       133 pDGk~l~va~~~~~~v~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~  208 (368)
T d1mdah_         133 ASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG  208 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCCcE----eEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccc
Confidence            9999988876 579999999887543    11111110       111122333333322221                 


Q ss_pred             -------------------cCCCcEEEEEcCCCceeeeeccCCC----------CCcceeeEEeCCCcEEEEeCC-----
Q 026679          119 -------------------TTNNNIYVLDAYGGEKRCGFSLEPS----------PNTNTEATFTPDGQYVVSGSG-----  164 (235)
Q Consensus       119 -------------------~~d~~i~~~d~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~-----  164 (235)
                                         ...+.+++++...+...........          +.....++++|++..++....     
T Consensus       209 ~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~  288 (368)
T d1mdah_         209 AQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS  288 (368)
T ss_dssp             TSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC
T ss_pred             ccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCce
Confidence                               1233445555544433322111111          122345788898887765432     


Q ss_pred             ----CCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCE-E-EEcc--cceEEeeCCCCCC
Q 026679          165 ----DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM-F-VAAS--SVLSFWIPNPSSN  218 (235)
Q Consensus       165 ----dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l-~~~~--~~i~iw~~~~~~~  218 (235)
                          ...|.+||..+++.+..+. +...+..++|+|||+. + +++.  +.+++||..+++.
T Consensus       289 ~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         289 CLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             TTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             eecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence                2359999999999888876 4467899999999973 3 3433  6799999987654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=1.1e-13  Score=101.91  Aligned_cols=197  Identities=12%  Similarity=0.063  Sum_probs=133.3

Q ss_pred             ceeEEEeecCCCeeEEEe-----ccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEe----------cCCeEEE
Q 026679           16 RVISLCMSPVNDSFMSGS-----LDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAM----------EAGAIKL   80 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~dg~v~i   80 (235)
                      ++.-.+.+||++.++...     .+..|.+||..+++.+..+..+..+.++|+|||+.|++.+          .++.|.+
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            445557789999887653     4567999999999999999888888899999999887653          4789999


Q ss_pred             EeccCCCCCCceeEeec-C----CCcceeEEEEccCCCeEEEec--CCCcEEEEEcCCCceeeeeccCCCC-----Ccce
Q 026679           81 FDSRSYDKGPFDTFLVG-G----DTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSP-----NTNT  148 (235)
Q Consensus        81 ~d~~~~~~~~~~~~~~~-~----~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~-----~~i~  148 (235)
                      ||..+.+...  ..... .    .......++|+|+++.++++.  .+..+.+|+..+++....+......     ....
T Consensus        83 ~D~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          83 FDPVTLLPTA--DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             ECTTTCCEEE--EEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EECCCCCEEE--EEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence            9998866411  11111 1    112345689999999887764  4678999999999887766543211     1233


Q ss_pred             eeEEeCCCcEEEEe-CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          149 EATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       149 ~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      .+.++++++.++.. ..++.+.+++......     .+...+....+.+++..++.++  +.+++|++......
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  229 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK  229 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE
Confidence            45667776666543 3344555555443332     2333455567777777777665  77999998876543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.56  E-value=2.1e-13  Score=104.52  Aligned_cols=139  Identities=10%  Similarity=0.082  Sum_probs=104.5

Q ss_pred             eEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-------CceEEEcCCCCEEEEEec---------CCeEEEE
Q 026679           18 ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-------RPTVAFDQQGLVFAVAME---------AGAIKLF   81 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~---------dg~v~i~   81 (235)
                      ..+.|.++++++..  .|+.+.+||+.+++....+..+.       ...+.|+||++.|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            45789999887764  47889999999998776665432       345899999999998753         5678999


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCC----------------CCC
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP----------------SPN  145 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------------~~~  145 (235)
                      |+.+++     ...+..+...+..+.|+|||+.++.. .++.+++|+..+++..+......                ..+
T Consensus        98 d~~~~~-----~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~  171 (470)
T d2bgra1          98 DLNKRQ-----LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (470)
T ss_dssp             ETTTTE-----ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             ECCCCc-----ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecC
Confidence            998865     33455677889999999999999985 56789999998887654432211                112


Q ss_pred             cceeeEEeCCCcEEEEeCC
Q 026679          146 TNTEATFTPDGQYVVSGSG  164 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~  164 (235)
                      ....+.|||||++|+....
T Consensus       172 ~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         172 AYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             SSBCEEECTTSSEEEEEEE
T ss_pred             CccccEECCCCCccceeEe
Confidence            3456789999999988754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=7.4e-13  Score=98.23  Aligned_cols=200  Identities=10%  Similarity=-0.057  Sum_probs=137.2

Q ss_pred             ccccceeEEEeecCCCee--E-EEeccc--eEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEe----------cCC
Q 026679           12 GHKERVISLCMSPVNDSF--M-SGSLDH--SVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAM----------EAG   76 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l--~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~dg   76 (235)
                      .+.++...++..++++..  + ....++  .+.+||..+++.+..+..+....++|+|+|+.+++.+          .++
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~   96 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTD   96 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCC
Confidence            355666667778888753  2 233444  4777799999999998888877899999999988765          367


Q ss_pred             eEEEEeccCCCCCCceeEeecCC-----CcceeEEEEccCCCeEEEec-CCCcEEEEEcCCCceeeeeccCCCCCcceee
Q 026679           77 AIKLFDSRSYDKGPFDTFLVGGD-----TAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA  150 (235)
Q Consensus        77 ~v~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~  150 (235)
                      .|.+||..+.+..  ........     ......++|+|||++++++. .++.+.+||+.+++.......+...     .
T Consensus        97 ~v~v~D~~t~~~~--~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~-----~  169 (368)
T d1mdah_          97 YVEVFDPVTFLPI--ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF-----H  169 (368)
T ss_dssp             EEEEECTTTCCEE--EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC-----C
T ss_pred             eEEEEECCCCcEe--eeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc-----e
Confidence            8999999886641  11111111     12234689999999998775 5799999999999988877654322     1


Q ss_pred             EEeCCCcEEEEeCCCCcEEEEEcCCCceeee------ecCCCcceeEEEeecCCCEEEEcccceEEeeCCCCCC
Q 026679          151 TFTPDGQYVVSGSGDGTLHAWNINTRNEVAC------WNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSN  218 (235)
Q Consensus       151 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~~~~  218 (235)
                      .+......++..+.||.+.++++........      ...+...+....+.+++..+.+.++.+.+++......
T Consensus       170 ~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~  243 (368)
T d1mdah_         170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGA  243 (368)
T ss_dssp             CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCC
T ss_pred             EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCce
Confidence            1222344666677888888888765443322      2234455667888888888888778888888765543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.1e-10  Score=82.50  Aligned_cols=212  Identities=16%  Similarity=0.191  Sum_probs=128.9

Q ss_pred             hhhhhhhcccccceeEEEeecCCCeeEEEeccc---eEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEEec-CCeE
Q 026679            4 NRILRYFKGHKERVISLCMSPVNDSFMSGSLDH---SVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAME-AGAI   78 (235)
Q Consensus         4 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~-dg~v   78 (235)
                      |.-.+.+..+...+...+|||||+.||-.....   .+.+.+...+........... ....|+|+|+.++.... ++..
T Consensus        28 G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~  107 (269)
T d2hqsa1          28 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSL  107 (269)
T ss_dssp             SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCcc
Confidence            333444445567788999999999998664433   466667666655444444333 34889999998887654 3343


Q ss_pred             EEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEec-CCC--cEEEEEcCCCceeeeeccCCCCCcceeeEEeCC
Q 026679           79 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus        79 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      .++.......   ................+++++..++..+ .++  .|.+.++..+.....   ...........|+|+
T Consensus       108 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~spd  181 (269)
T d2hqsa1         108 NLYVMDLASG---QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI---TWEGSQNQDADVSSD  181 (269)
T ss_dssp             EEEEEETTTC---CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC---CCSSSEEEEEEECTT
T ss_pred             ceeecccccc---cceeeeeccccccccccccccccceecccccCCceEeeeecccccceee---ecccccccccccccc
Confidence            4433333221   1222233334445566777776555543 344  466667666544322   223345667899999


Q ss_pred             CcEEEEeCCC-Cc--EEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc-----cceEEeeCCCCCCCCCCC
Q 026679          156 GQYVVSGSGD-GT--LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNSTDES  223 (235)
Q Consensus       156 ~~~l~~~~~d-g~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~iw~~~~~~~~~~~~  223 (235)
                      ++.++..+.+ +.  +.+.+...+..  ....+........|+|||+.|+..+     ..+.++++++.....+..
T Consensus       182 g~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~  255 (269)
T d2hqsa1         182 GKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA  255 (269)
T ss_dssp             SSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred             cceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeC
Confidence            9998876554 33  44555544433  3333555677889999999998665     458899998876554443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.46  E-value=7.2e-13  Score=101.46  Aligned_cols=141  Identities=14%  Similarity=0.128  Sum_probs=104.3

Q ss_pred             eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCce-eEeecCCCcceeEEEEccCCCeEEEecC---------CCcEEEEE
Q 026679           59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD-TFLVGGDTAEVCDIKFSNDGKSMLLTTT---------NNNIYVLD  128 (235)
Q Consensus        59 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~~d  128 (235)
                      .+.|.++++++.  ..++.+.+||+.+++...+. ...+..+...+.++.|+|||++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            378899888665  35788999999987742110 0122344567999999999999998753         56789999


Q ss_pred             cCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCC------------------Cccee
Q 026679          129 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN------------------IGVVA  190 (235)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------------~~~v~  190 (235)
                      +.+++..   .+..++..+..+.|||||++||.. .++.+++|+..+++.......+                  .+...
T Consensus        99 ~~~~~~~---~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~  174 (470)
T d2bgra1          99 LNKRQLI---TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (470)
T ss_dssp             TTTTEEC---CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             CCCCccc---ccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence            9988754   334455668999999999999986 4668999999888765443221                  22346


Q ss_pred             EEEeecCCCEEEEcc
Q 026679          191 CLKWAPRRAMFVAAS  205 (235)
Q Consensus       191 ~~~~~~~~~~l~~~~  205 (235)
                      .+.|+|||++|+...
T Consensus       175 ~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         175 ALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             CEEECTTSSEEEEEE
T ss_pred             ccEECCCCCccceeE
Confidence            688999999999986

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.46  E-value=3.3e-12  Score=95.51  Aligned_cols=180  Identities=10%  Similarity=0.018  Sum_probs=123.0

Q ss_pred             eEEEeccceEEEEecCcceeeeeeeccC-----------------------------Cce---EEEcCCCCEEEEEe-cC
Q 026679           29 FMSGSLDHSVRIWDLRVNACQGILRLRG-----------------------------RPT---VAFDQQGLVFAVAM-EA   75 (235)
Q Consensus        29 l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----------------------------~~~---~~~~~~~~~l~~~~-~d   75 (235)
                      +++++.+|.|++|++.+++.++.+..-.                             .+.   ....|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            6788899999999999888777653310                             011   22467899887665 67


Q ss_pred             CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEE--ecCCC-----------------cEEEEEcCCCceee
Q 026679           76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL--TTTNN-----------------NIYVLDAYGGEKRC  136 (235)
Q Consensus        76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~-----------------~i~~~d~~~~~~~~  136 (235)
                      +.|.++|+.+++..   ......+......++|+|+|+.+++  .+.+.                 .+..+|..+.+...
T Consensus        94 ~rVavIDl~t~k~~---~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          94 TRVARIRLDIMKTD---KITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TEEEEEETTTTEEE---EEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CEEEEEECCCCcEe---eEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            89999999987641   1122344567889999999985433  33221                 23558888877766


Q ss_pred             eeccCCCCCcceeeEEeCCCcEEEEeCCC-----------------------------------------CcEEEEEcCC
Q 026679          137 GFSLEPSPNTNTEATFTPDGQYVVSGSGD-----------------------------------------GTLHAWNINT  175 (235)
Q Consensus       137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------------------------------------g~i~v~d~~~  175 (235)
                      .......   ...+.|+|+|+++++.+.+                                         +.+.+++...
T Consensus       171 qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~  247 (441)
T d1qnia2         171 QVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE  247 (441)
T ss_dssp             EEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS
T ss_pred             EEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC
Confidence            6655433   5679999999998876533                                         2344444444


Q ss_pred             CceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCC
Q 026679          176 RNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP  215 (235)
Q Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~  215 (235)
                      .+.+..+.... ....+.++|||+++++++   +++.+||++.
T Consensus       248 ~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         248 SEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            44555555443 468899999999988775   7899999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=7e-11  Score=83.24  Aligned_cols=194  Identities=12%  Similarity=0.071  Sum_probs=128.3

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF   94 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~   94 (235)
                      ....++++++++.+++....+.+++++-.+............ ..+++.++++++++-..+..+..++......    ..
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~  133 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TV  133 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EE
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeecccccccccccccccee----ee
Confidence            346788999988877777777777766555444433332222 3389999999888777777777777655332    12


Q ss_pred             eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcC
Q 026679           95 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN  174 (235)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  174 (235)
                      ...........+++.|+++.+++...++.|..+|........ ... ........++++++|+++++....+.|..++..
T Consensus       134 ~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~-~~~-~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         134 LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-LPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             CCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-CCC-SSCCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred             eeecccCCcceeeecCCCCEeeeccccccccccccccceeee-eec-cccCCCccceeeeeeeeeeeecCCCEEEEEeCC
Confidence            111222445789999999988888888899999976554332 221 222446889999999998888888889888865


Q ss_pred             CCceeeeecCCCcceeEEEeecCCCEEEEcccceEEeeCCC
Q 026679          175 TRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNP  215 (235)
Q Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~iw~~~~  215 (235)
                      ...........-.....|+++++|.++++-.+.-+|+.+++
T Consensus       212 ~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         212 STTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            44322221223346789999999987777554445555543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.41  E-value=2.5e-10  Score=82.14  Aligned_cols=198  Identities=13%  Similarity=0.054  Sum_probs=133.1

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeE
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF   94 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~   94 (235)
                      .+..++++|||+++++...+++|..|+... +......... ...++++++|+++++...++.+..++........ ...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~-~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-ETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-EEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce-eec
Confidence            477899999999999999999998888653 3333333222 3349999999999999888999888876644322 222


Q ss_pred             eecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeec--------cCCCCCcceeeEEeCCCcEEEEeCCCC
Q 026679           95 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS--------LEPSPNTNTEATFTPDGQYVVSGSGDG  166 (235)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~dg  166 (235)
                      ...........+.+.++++.+++.+.++.+..+|...+.......        ..........+.++. +.++++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence            222344567899999999988888889999999987765332111        111112344555543 34556667788


Q ss_pred             cEEEEEcCCCceeeee--cCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          167 TLHAWNINTRNEVACW--NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       167 ~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      .|+.++..........  .........+++.++|.++++..  +.|..++.+..
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            8998887654332221  11234567899999999877764  66777777654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=6.8e-10  Score=78.90  Aligned_cols=195  Identities=11%  Similarity=0.136  Sum_probs=123.9

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC---------------------------------------
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG---------------------------------------   56 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------------------------------------   56 (235)
                      .-..++++++++.+++-.....|++||.+ ++.+..+....                                       
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            35788999998877776677889898854 33322221100                                       


Q ss_pred             -------------CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCc
Q 026679           57 -------------RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN  123 (235)
Q Consensus        57 -------------~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  123 (235)
                                   ...+++.+++.++++....+.+.+++....   .........+......+++.++++.+++....+.
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~---~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN---VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC---EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc---eeecccccccccccceeeeccceeEEeeeccccc
Confidence                         001333334444444333444444443221   1111222334456778889999988888888899


Q ss_pred             EEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCC-CCcEEEEEcCCCceeeeecCC--CcceeEEEeecCCCE
Q 026679          124 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINTRNEVACWNGN--IGVVACLKWAPRRAM  200 (235)
Q Consensus       124 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~  200 (235)
                      |++||. +++.+..+...........++++|+|+.+++-.. ++.|.+|+ .+++.+..+...  ......+++.|+|.+
T Consensus       180 V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l  257 (279)
T d1q7fa_         180 VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSV  257 (279)
T ss_dssp             EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             eeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence            999996 5565655543444455788999999998777544 45799998 478877666422  346789999999987


Q ss_pred             EEEcc-cceEEeeCCCC
Q 026679          201 FVAAS-SVLSFWIPNPS  216 (235)
Q Consensus       201 l~~~~-~~i~iw~~~~~  216 (235)
                      +++.. ..|++|.+...
T Consensus       258 ~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         258 VLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEETTTEEEEEECSCC
T ss_pred             EEEeCCCeEEEEEeeee
Confidence            76655 66999988654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=3e-10  Score=79.93  Aligned_cols=202  Identities=11%  Similarity=0.094  Sum_probs=127.0

Q ss_pred             hhhccccc--ceeEEEeecCCCeeEEE-eccceEEEEecCcceee-eeeeccCC-ceEEEcCCCCEEEEEecCCeEEEEe
Q 026679            8 RYFKGHKE--RVISLCMSPVNDSFMSG-SLDHSVRIWDLRVNACQ-GILRLRGR-PTVAFDQQGLVFAVAMEAGAIKLFD   82 (235)
Q Consensus         8 ~~~~~h~~--~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~-~~~~~~~~-~~~~~~~~~~~l~~~~~dg~v~i~d   82 (235)
                      -.+.++..  .-.+++++++|+..++. +..+.+..++....... ........ ..++++++++++++....+.+++++
T Consensus         5 ~~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~   84 (260)
T d1rwia_           5 LPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAA   84 (260)
T ss_dssp             CCCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECT
T ss_pred             EecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeee
Confidence            33445443  34789999999866554 45567777765433222 22222222 3489999999887776666666665


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      ..+..     .............+++.++++.+++-..+..+..++....... ..... .......++++|+++++++.
T Consensus        85 ~~~~~-----~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~-~~~~~-~~~~p~~i~~~~~g~~~v~~  157 (260)
T d1rwia_          85 GSNNQ-----TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLPFT-GLNDPDGVAVDNSGNVYVTD  157 (260)
T ss_dssp             TCSCC-----EECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE-ECCCC-SCCSCCEEEECTTCCEEEEE
T ss_pred             eccce-----eeeeeeeeeecccccccccceeEeeccccccccccccccceee-eeeec-ccCCcceeeecCCCCEeeec
Confidence            44322     1121222345788999999988777667777888876554322 22222 22345789999999988888


Q ss_pred             CCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCC
Q 026679          163 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS  216 (235)
Q Consensus       163 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~  216 (235)
                      ..++.|..+|...................|++.++|.++++..  +.+..++.+..
T Consensus       158 ~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         158 TDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             GGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             cccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            8888999999765444333333445678999999998877776  44666665544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.34  E-value=1.6e-10  Score=86.40  Aligned_cols=194  Identities=12%  Similarity=0.060  Sum_probs=122.6

Q ss_pred             cccceeEEEeecCCCeeEEE-eccceEEEEecCcceeeeeeeccC---CceEEEcCCCCE--EEEEecCC----------
Q 026679           13 HKERVISLCMSPVNDSFMSG-SLDHSVRIWDLRVNACQGILRLRG---RPTVAFDQQGLV--FAVAMEAG----------   76 (235)
Q Consensus        13 h~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~--l~~~~~dg----------   76 (235)
                      |.-......++|||++|+.. ..+.+|.++|+++++....+..+.   ...++++|+++.  ++..+.+.          
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            55566677788999988655 568899999999999888776432   334899999984  33333321          


Q ss_pred             -------eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC----------------------------
Q 026679           77 -------AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN----------------------------  121 (235)
Q Consensus        77 -------~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------------------  121 (235)
                             .+..+|..+.+.  ......   ......+.++|+|+++++.+.+                            
T Consensus       150 ~~~~~~~~~~~iD~~t~~v--~~qI~v---~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~  224 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDV--AWQVIV---DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA  224 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSE--EEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred             ccccccceEEeecCcccee--eEEEec---CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence                   224466655442  111222   2356778999999988877643                            


Q ss_pred             -------------CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE-EeCCCCcEEEEEcCCCcee--------
Q 026679          122 -------------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAWNINTRNEV--------  179 (235)
Q Consensus       122 -------------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~--------  179 (235)
                                   +.+.+++....+.+..+...   .....+.++|||++++ ++..++++.|||+.+....        
T Consensus       225 ~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg---ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~  301 (441)
T d1qnia2         225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP---KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR  301 (441)
T ss_dssp             HHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB---SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG
T ss_pred             EecCCCEEEeCCCCcEEEEcccCCceEEEEeCC---CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc
Confidence                         22333333333333333322   2246799999999875 5677999999998653321        


Q ss_pred             eeecCCC---cceeEEEeecCCCEEEEcc--cceEEeeCC
Q 026679          180 ACWNGNI---GVVACLKWAPRRAMFVAAS--SVLSFWIPN  214 (235)
Q Consensus       180 ~~~~~~~---~~v~~~~~~~~~~~l~~~~--~~i~iw~~~  214 (235)
                      ..+.++.   -.....+|.++|..+.+..  +.+..|++.
T Consensus       302 ~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             GGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             eEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            1111111   1234568999998777765  779999874

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.24  E-value=8.3e-09  Score=74.42  Aligned_cols=191  Identities=12%  Similarity=0.115  Sum_probs=120.2

Q ss_pred             eeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeec-c-----CCceEEEcCCCCEEEEEec---------------C
Q 026679           17 VISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRL-R-----GRPTVAFDQQGLVFAVAME---------------A   75 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~-----~~~~~~~~~~~~~l~~~~~---------------d   75 (235)
                      -..++|.++++.++++.....+...+.+.......... .     ..+-+++.++|++.++-..               .
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            35689999998888777777788888765433222111 1     1234899999988776432               2


Q ss_pred             CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCC-----eEEEecCCCcEEEEEcCCCceeee----eccCC-CCC
Q 026679           76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-----SMLLTTTNNNIYVLDAYGGEKRCG----FSLEP-SPN  145 (235)
Q Consensus        76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~-~~~  145 (235)
                      |.+..++... +     .......-...+.++|+|+++     .+++-+..+.|..||+.....+..    ..... ...
T Consensus       153 G~v~~~~~dg-~-----~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T d1pjxa_         153 GSIYCFTTDG-Q-----MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             EEEEEECTTS-C-----EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             ceEEEEeecC-c-----eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc
Confidence            3344444321 1     111111223346789998764     444556788899998764432221    11111 122


Q ss_pred             cceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEE-EEcccceEEeeC
Q 026679          146 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF-VAASSVLSFWIP  213 (235)
Q Consensus       146 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~i~iw~~  213 (235)
                      ....+++.++|++.++....+.|.+||.+.++.+..+......+++++|.|+++.| ++.+..-+||.+
T Consensus       227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            35679999999988887788899999988888777776666778999999998755 444443444444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.23  E-value=3.2e-09  Score=78.32  Aligned_cols=159  Identities=10%  Similarity=0.045  Sum_probs=102.2

Q ss_pred             eEEEcCCCCEEEEEec-CCeEEEEeccCCCCCC-ceeEeecCCCcceeEEEEccCCCeEEEec-CCCcEEEEEcCCCcee
Q 026679           59 TVAFDQQGLVFAVAME-AGAIKLFDSRSYDKGP-FDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKR  135 (235)
Q Consensus        59 ~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~  135 (235)
                      .+.|+|+|+++++++. ...|.+|+........ .............+.++|+|+++++++.. .+++|.+|++..++..
T Consensus       149 ~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~  228 (365)
T d1jofa_         149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM  228 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             EEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCce
Confidence            4999999998888764 4578888765432211 11112223345788999999999886655 4888999998765432


Q ss_pred             eeec-----cC------------CCCCcceeeEEeCCCcEEEEeCC------CCcEEEEEcCCCceeee------ecCCC
Q 026679          136 CGFS-----LE------------PSPNTNTEATFTPDGQYVVSGSG------DGTLHAWNINTRNEVAC------WNGNI  186 (235)
Q Consensus       136 ~~~~-----~~------------~~~~~i~~~~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~------~~~~~  186 (235)
                      ....     ..            ........+.++|+|++|+++..      .+.|..|++.....+..      .....
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G  308 (365)
T d1jofa_         229 PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG  308 (365)
T ss_dssp             EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC
T ss_pred             EEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC
Confidence            2111     10            01123456899999999987632      23477777754322211      11223


Q ss_pred             cceeEEEeec-CCCEEEEcc---cceEEeeCCCCC
Q 026679          187 GVVACLKWAP-RRAMFVAAS---SVLSFWIPNPSS  217 (235)
Q Consensus       187 ~~v~~~~~~~-~~~~l~~~~---~~i~iw~~~~~~  217 (235)
                      ....+++++| +|++|+++.   +.|.+|+++...
T Consensus       309 ~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         309 GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            4567899998 899888885   779999886543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.16  E-value=1.3e-08  Score=75.03  Aligned_cols=161  Identities=12%  Similarity=0.116  Sum_probs=100.6

Q ss_pred             ceeEEEeecCCCeeEEEec-cceEEEEecCcce-ee--eeeec---cCC-ceEEEcCCCCEEEEEe-cCCeEEEEeccCC
Q 026679           16 RVISLCMSPVNDSFMSGSL-DHSVRIWDLRVNA-CQ--GILRL---RGR-PTVAFDQQGLVFAVAM-EAGAIKLFDSRSY   86 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~-~~--~~~~~---~~~-~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~   86 (235)
                      .+.++.|+|+|+++++++. ...|.+|+..... ..  .....   ... .-++|+|+++++.+.. .++.|.+|++...
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4679999999998887754 4478888765332 21  11111   112 2399999999886665 5789999998765


Q ss_pred             CCCCceeEe---e------------cCCCcceeEEEEccCCCeEEEecC------CCcEEEEEcCCCceeee----eccC
Q 026679           87 DKGPFDTFL---V------------GGDTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDAYGGEKRCG----FSLE  141 (235)
Q Consensus        87 ~~~~~~~~~---~------------~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~----~~~~  141 (235)
                      .........   +            .........+.++|+|++|+++..      .+.|..|++.....+..    ....
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            432211111   0            011223567899999999888743      23477787765332211    1112


Q ss_pred             CCCCcceeeEEeC-CCcEEEEe-CCCCcEEEEEcCCC
Q 026679          142 PSPNTNTEATFTP-DGQYVVSG-SGDGTLHAWNINTR  176 (235)
Q Consensus       142 ~~~~~i~~~~~~~-~~~~l~~~-~~dg~i~v~d~~~~  176 (235)
                      ........++++| +|++|+++ ..++.|.+|+++..
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            2223457799998 79988666 56789999987544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.3e-09  Score=81.56  Aligned_cols=196  Identities=14%  Similarity=0.137  Sum_probs=124.8

Q ss_pred             EEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-----CceEEEcCCCCEEEEEe---------cCCeEEEEeccC
Q 026679           20 LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-----RPTVAFDQQGLVFAVAM---------EAGAIKLFDSRS   85 (235)
Q Consensus        20 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~---------~dg~v~i~d~~~   85 (235)
                      ..|.+++.++.. ..+|.|.+||+.+++....+....     .....++||++.++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            468888776654 567899999999887655554432     23378999999888764         357889999988


Q ss_pred             CCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCC-----------------cce
Q 026679           86 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN-----------------TNT  148 (235)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-----------------~i~  148 (235)
                      +...++  .........+....|+|||+.++... ++.|.+.+..++...+.... +...                 .-.
T Consensus       101 ~~~~~l--~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~-g~~~~i~nG~~d~vyeee~~~~~~  176 (465)
T d1xfda1         101 GDPQSL--DPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHI  176 (465)
T ss_dssp             CCCEEC--CCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             Cceeec--cCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecc-cCcceeeccccchhhhhhhccccc
Confidence            764221  11122334556688999999988865 66788888877665544321 1111                 124


Q ss_pred             eeEEeCCCcEEEEeCCC-C---------------------------------cEEEEEcCCCceeeee------cCCCcc
Q 026679          149 EATFTPDGQYVVSGSGD-G---------------------------------TLHAWNINTRNEVACW------NGNIGV  188 (235)
Q Consensus       149 ~~~~~~~~~~l~~~~~d-g---------------------------------~i~v~d~~~~~~~~~~------~~~~~~  188 (235)
                      .+.|||||++||....| .                                 .+.++|+.++......      ......
T Consensus       177 a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y  256 (465)
T d1xfda1         177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY  256 (465)
T ss_dssp             EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred             eEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccce
Confidence            57799999999875311 1                                 2455665444322111      112234


Q ss_pred             eeEEEeecCCCEEEEcc------cceEEeeCCCCCCCC
Q 026679          189 VACLKWAPRRAMFVAAS------SVLSFWIPNPSSNST  220 (235)
Q Consensus       189 v~~~~~~~~~~~l~~~~------~~i~iw~~~~~~~~~  220 (235)
                      +..+.|+|++++++...      ..+.++|..++....
T Consensus       257 ~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~  294 (465)
T d1xfda1         257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (465)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             eeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEE
Confidence            67889999998776653      247777877665443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.14  E-value=9.4e-08  Score=68.96  Aligned_cols=199  Identities=9%  Similarity=0.059  Sum_probs=121.3

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC-C-ceEEEcCCCCEEEEEecC----CeEEEEeccCCCCC
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG-R-PTVAFDQQGLVFAVAMEA----GAIKLFDSRSYDKG   89 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~d----g~v~i~d~~~~~~~   89 (235)
                      .+..++|.++|++.++-...+.|..|+.+.+.......... . ..++++++|+++++...+    +.+...+...... 
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~-  119 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL-  119 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC-
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee-
Confidence            34688999999877777788899999987765554443322 2 238999999988776432    3344444444332 


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEecC------CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE-EEe
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSG  162 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~  162 (235)
                       ...............+++.++|+..++...      .+.+..++...+....... .  -...+.++|+|+++.| ++-
T Consensus       120 -~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~--~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         120 -QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-N--ISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             -EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-E--ESSEEEEEECTTSSEEEEEE
T ss_pred             -eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee-c--cceeeeeeeccccceEEEec
Confidence             111111122345778999999986655332      2336666554333222111 1  1235779999999866 455


Q ss_pred             CCCCcEEEEEcCCC-ceeee-------ecCCCcceeEEEeecCCCEEEEcc--cceEEeeCCCCCCC
Q 026679          163 SGDGTLHAWNINTR-NEVAC-------WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS  219 (235)
Q Consensus       163 ~~dg~i~v~d~~~~-~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~~~~~~~  219 (235)
                      +..+.|+.|++... .....       ..........|++.++|++.++..  +.|.+++.+...+.
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~  262 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIG  262 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEE
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEE
Confidence            66789999998632 21111       111223467899999999777653  77999997765433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.08  E-value=1e-08  Score=73.51  Aligned_cols=192  Identities=10%  Similarity=0.007  Sum_probs=120.5

Q ss_pred             cccccceeEEEeecCCCeeEEEeccceEEEEecCcce--eeeeeeccC---CceEEEcCCCCEEEEEecCCeEEEEeccC
Q 026679           11 KGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA--CQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus        11 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      ......+.+++|+++|+++++...++.+..++.....  .........   ...+++.++++++++.+.++.+..+|...
T Consensus        64 ~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~  143 (302)
T d2p4oa1          64 ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ  143 (302)
T ss_dssp             EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred             EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccC
Confidence            3445678999999999998888888888888765432  222222222   22388999999888888888888888765


Q ss_pred             CCCCCce------eEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEE
Q 026679           86 YDKGPFD------TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV  159 (235)
Q Consensus        86 ~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  159 (235)
                      .......      .............+.+.. +..+++.+..+.|..++.....................++++++|+++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~  222 (302)
T d2p4oa1         144 PSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLY  222 (302)
T ss_dssp             TEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEE
T ss_pred             CcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEE
Confidence            4310000      000011122345566553 334555667888999988765433222111112335679999999988


Q ss_pred             EEeCCCCcEEEEEcCCCce--eeeecCCCcceeEEEe---ecCCCEEEEc
Q 026679          160 VSGSGDGTLHAWNINTRNE--VACWNGNIGVVACLKW---APRRAMFVAA  204 (235)
Q Consensus       160 ~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~---~~~~~~l~~~  204 (235)
                      ++...++.|..++.. ++.  +..........++++|   .+|++.|..+
T Consensus       223 va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         223 GATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             EECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             EEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence            888888999999864 443  2233333346789999   6677776554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=9.2e-08  Score=66.98  Aligned_cols=179  Identities=17%  Similarity=0.193  Sum_probs=107.5

Q ss_pred             hhcccccceeEEEeecCCCeeEEEec-cceEEEE--ecCcceeeeeeeccCCc-eEEEcCCCCEEEEE-ecCCe--EEEE
Q 026679            9 YFKGHKERVISLCMSPVNDSFMSGSL-DHSVRIW--DLRVNACQGILRLRGRP-TVAFDQQGLVFAVA-MEAGA--IKLF   81 (235)
Q Consensus         9 ~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vw--d~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~-~~dg~--v~i~   81 (235)
                      .+..+.+......|+|+|+.++.... ++...++  ................. ...+++++..++.. ..+|.  +...
T Consensus        77 ~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~  156 (269)
T d2hqsa1          77 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV  156 (269)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeee
Confidence            44456677888999999988776543 3332222  22222222222222222 25677776655444 44554  4444


Q ss_pred             eccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC---cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcE
Q 026679           82 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN---NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY  158 (235)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  158 (235)
                      ++....     ...............|+|+++.++..+.++   .+.+.+...+...  ...  .........|+|||++
T Consensus       157 ~~~~~~-----~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~--~~~~~~~p~~SPDG~~  227 (269)
T d2hqsa1         157 NINGGA-----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLS--STFLDETPSLAPNGTM  227 (269)
T ss_dssp             ETTSSC-----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--ECC--CSSSCEEEEECTTSSE
T ss_pred             eccccc-----ceeeecccccccccccccccceeEEEeecCCceeeeEeecccccce--Eee--cCccccceEECCCCCE
Confidence            554433     223334456677789999999988876644   3555565554432  222  2234667899999999


Q ss_pred             EEEeCC---CCcEEEEEcCCCceeeeecCCCcceeEEEeecC
Q 026679          159 VVSGSG---DGTLHAWNINTRNEVACWNGNIGVVACLKWAPR  197 (235)
Q Consensus       159 l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  197 (235)
                      |+..+.   ...|+++++..+.. ..+....+.+...+|+|-
T Consensus       228 i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         228 VIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred             EEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence            975543   34689999966554 455556678888999983

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.07  E-value=5e-08  Score=69.03  Aligned_cols=158  Identities=13%  Similarity=0.121  Sum_probs=108.7

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC----CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCC
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG----RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP   90 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~   90 (235)
                      .....+++.+++.++++....+.+.+++. +++.+..+....    ...+++.++++++++....+.|.+||.....   
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~---  189 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY---  189 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE---
T ss_pred             cccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCce---
Confidence            44567788888887777766677878775 455555543222    1238889999988888889999999975421   


Q ss_pred             ceeEeecCCCcceeEEEEccCCCeEEEecC-CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEE
Q 026679           91 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH  169 (235)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  169 (235)
                      ...+...+.......+++.++|+.+++-.. ++.|.+|+ .+++.+..+...........+++.|+|+++++ +.++.|+
T Consensus       190 ~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~  267 (279)
T d1q7fa_         190 LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLY  267 (279)
T ss_dssp             EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEE
T ss_pred             eeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEE
Confidence            112212234455788999999997666443 45799998 46777666654444445788999999986655 5688999


Q ss_pred             EEEcCCCce
Q 026679          170 AWNINTRNE  178 (235)
Q Consensus       170 v~d~~~~~~  178 (235)
                      +|......+
T Consensus       268 ~fr~~~~~~  276 (279)
T d1q7fa_         268 IYRYVQLAP  276 (279)
T ss_dssp             EEECSCCCC
T ss_pred             EEEeeeecC
Confidence            999876543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.04  E-value=1.1e-07  Score=68.37  Aligned_cols=198  Identities=13%  Similarity=0.116  Sum_probs=120.3

Q ss_pred             eeEEEeecCCCeeEEEec-------cceEEEEecCcceeeeeeecc-----CCc-eEEEcCCCCEEEEEecCCeEEEEec
Q 026679           17 VISLCMSPVNDSFMSGSL-------DHSVRIWDLRVNACQGILRLR-----GRP-TVAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus        17 v~~~~~~~~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~~-----~~~-~~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      .-.++|.++|+++++...       +++|..||..++.........     ..+ .+++.++++.++++...+.+..++.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            456789999987765432       467888998777544332211     123 3899999998888887777888887


Q ss_pred             cCCCCCCceeEeecCC-CcceeEEEEccCCCeEEEecC---------------CCcEEEEEcCCCceeeeeccCCCCCcc
Q 026679           84 RSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTTT---------------NNNIYVLDAYGGEKRCGFSLEPSPNTN  147 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---------------d~~i~~~d~~~~~~~~~~~~~~~~~~i  147 (235)
                      ........ .....+. -...+.+++.++|+..++-..               .|.|+.++. .++.......   ....
T Consensus       100 ~g~~~~~~-~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~---~~~p  174 (314)
T d1pjxa_         100 DGTFEEIA-KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTA---FQFP  174 (314)
T ss_dssp             TSCEEECC-SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEE---ESSE
T ss_pred             CCcEEEEE-eccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCC---ccee
Confidence            65321000 0000111 123577899999987665322               234555554 2333222211   1224


Q ss_pred             eeeEEeCCCc-----EEEEeCCCCcEEEEEcCCCceee------eecC-CCcceeEEEeecCCCEEEEcc--cceEEeeC
Q 026679          148 TEATFTPDGQ-----YVVSGSGDGTLHAWNINTRNEVA------CWNG-NIGVVACLKWAPRRAMFVAAS--SVLSFWIP  213 (235)
Q Consensus       148 ~~~~~~~~~~-----~l~~~~~dg~i~v~d~~~~~~~~------~~~~-~~~~v~~~~~~~~~~~l~~~~--~~i~iw~~  213 (235)
                      +.++|+|++.     ++++-+..+.|..||+.....+.      .+.. .......+++.++|++.++..  +.|.+|+.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            6789998764     44556778889999876432221      2221 223467899999999877653  77999998


Q ss_pred             CCCCCC
Q 026679          214 NPSSNS  219 (235)
Q Consensus       214 ~~~~~~  219 (235)
                      ++....
T Consensus       255 ~~g~~~  260 (314)
T d1pjxa_         255 DGGQPK  260 (314)
T ss_dssp             TCBSCS
T ss_pred             CCCEEE
Confidence            866543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.04  E-value=2.2e-07  Score=66.98  Aligned_cols=185  Identities=12%  Similarity=0.063  Sum_probs=112.4

Q ss_pred             ccceeEEEeecCCCeeEEEec----cceEEEEecCcceeeeeeeccC----CceEEEcCCCCEEEEEec------CCeEE
Q 026679           14 KERVISLCMSPVNDSFMSGSL----DHSVRIWDLRVNACQGILRLRG----RPTVAFDQQGLVFAVAME------AGAIK   79 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~------dg~v~   79 (235)
                      ......++++++|+++++...    .+.+...+..............    ..-+++.++|++.++...      .+.+.
T Consensus        81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~  160 (319)
T d2dg1a1          81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY  160 (319)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeE
Confidence            345678899999887776533    2334444544444333332211    122889999987665432      23344


Q ss_pred             EEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcCCCc-eeee-----eccCCCCCcceeeEE
Q 026679           80 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGE-KRCG-----FSLEPSPNTNTEATF  152 (235)
Q Consensus        80 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~-~~~~-----~~~~~~~~~i~~~~~  152 (235)
                      .++.....     .......-...+.++|+|+++.|+.+ +..+.|..|++.... ....     ............+++
T Consensus       161 ~~~~dg~~-----~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~v  235 (319)
T d2dg1a1         161 YVSPDFRT-----VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI  235 (319)
T ss_dssp             EECTTSCC-----EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred             EEecccce-----eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeE
Confidence            44443322     11111122345789999999866544 568899999986432 1111     111111223567999


Q ss_pred             eCCCcEEEEeCCCCcEEEEEcCCCceeeeecC------CCcceeEEEeecCCCEEEEc
Q 026679          153 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNG------NIGVVACLKWAPRRAMFVAA  204 (235)
Q Consensus       153 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~  204 (235)
                      .++|++.++....+.|.+||. +++.+..+..      +...+++++|.|+...++..
T Consensus       236 D~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t  292 (319)
T d2dg1a1         236 DSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC  292 (319)
T ss_dssp             BTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred             cCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEE
Confidence            999998888888999999995 7888877642      23467899999987666554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.99  E-value=1.5e-07  Score=66.15  Aligned_cols=199  Identities=10%  Similarity=0.032  Sum_probs=108.2

Q ss_pred             EeecC--CCeeEEEeccceEEEEecCcceeeeeeeccCC-ceEEEcCCCCEEEEEec-CC-----eEEEEeccCCCCCCc
Q 026679           21 CMSPV--NDSFMSGSLDHSVRIWDLRVNACQGILRLRGR-PTVAFDQQGLVFAVAME-AG-----AIKLFDSRSYDKGPF   91 (235)
Q Consensus        21 ~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~-dg-----~v~i~d~~~~~~~~~   91 (235)
                      ..+|+  |+.++-.+ ++.|.+.|+..++..+....... ...+|+|||+.|+.... ++     .+.+++..+++...+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            46788  98877654 45788889988877655444333 23899999999887643 22     366666655442111


Q ss_pred             ee--EeecCCCcceeEEEEccCCCeEEEecCC------CcEEEEEcCCCceeeeecc-------------------C---
Q 026679           92 DT--FLVGGDTAEVCDIKFSNDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSL-------------------E---  141 (235)
Q Consensus        92 ~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~-------------------~---  141 (235)
                      ..  ..............|+|+|+.|+.....      ..+...+...+........                   .   
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPH  163 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTT
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccce
Confidence            00  0011122345678899999988765331      2234444432221110000                   0   


Q ss_pred             -------------------------CCCCcceeeEEeCCCcEEEEeCC--CCcEEEEEcCCCceeeeecCCCcceeEEEe
Q 026679          142 -------------------------PSPNTNTEATFTPDGQYVVSGSG--DGTLHAWNINTRNEVACWNGNIGVVACLKW  194 (235)
Q Consensus       142 -------------------------~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~  194 (235)
                                               ..........++++. .+.....  ...|+++|+.+++.. .+..+. ......|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~-~~~~~~~  240 (281)
T d1k32a2         164 WKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR-KHTSFT-DYYPRHL  240 (281)
T ss_dssp             STTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE-ECCCCC-SSCEEEE
T ss_pred             eeeeccCCcceeeeeccccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceE-EeecCC-CcccccC
Confidence                                     000111122233332 2222222  345778887655543 333222 2233468


Q ss_pred             ecCCCEEEEcc-cceEEeeCCCCCCCCCCC
Q 026679          195 APRRAMFVAAS-SVLSFWIPNPSSNSTDES  223 (235)
Q Consensus       195 ~~~~~~l~~~~-~~i~iw~~~~~~~~~~~~  223 (235)
                      +|||+.|+... +.+.++++++++...+..
T Consensus       241 SpDG~~I~f~~~~~l~~~d~~~g~~~~i~~  270 (281)
T d1k32a2         241 NTDGRRILFSKGGSIYIFNPDTEKIEKIEI  270 (281)
T ss_dssp             EESSSCEEEEETTEEEEECTTTCCEEECCC
T ss_pred             cCCCCEEEEEeCCEEEEEECCCCCEEEecc
Confidence            99999888765 889999998887666654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.98  E-value=6.2e-07  Score=63.82  Aligned_cols=182  Identities=13%  Similarity=0.114  Sum_probs=119.3

Q ss_pred             ccceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccC------CceEEEcCCCCEEEEEecC----CeEEEEec
Q 026679           14 KERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRG------RPTVAFDQQGLVFAVAMEA----GAIKLFDS   83 (235)
Q Consensus        14 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~d----g~v~i~d~   83 (235)
                      ...+.++++.++|.++++ +.+ .+..+|..+++.........      .+.+.+.|+|++.++....    +.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            346778888888876665 444 48899998887654433222      1227889999877765432    34455655


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcCCCc------eeeeeccCCCCCcceeeEEeCCC
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGE------KRCGFSLEPSPNTNTEATFTPDG  156 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~------~~~~~~~~~~~~~i~~~~~~~~~  156 (235)
                      ..++.     ......-.....++|+++++.++.+ +..+.|..|++....      ...........+....+++.++|
T Consensus       136 ~~g~~-----~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G  210 (295)
T d2ghsa1         136 AKGKV-----TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG  210 (295)
T ss_dssp             ETTEE-----EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS
T ss_pred             cCCcE-----EEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCC
Confidence            54331     1111222345789999999866544 557889999874321      11112223334557889999999


Q ss_pred             cEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEEEee-cCCCEEEE
Q 026679          157 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA-PRRAMFVA  203 (235)
Q Consensus       157 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~  203 (235)
                      ++.++.-..+.|..||. +++.+..+......+++++|- |+.+.|..
T Consensus       211 nlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         211 HIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             CEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             CEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEE
Confidence            98887777788999994 788888887666779999996 56555543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.91  E-value=7e-07  Score=63.54  Aligned_cols=197  Identities=11%  Similarity=0.029  Sum_probs=122.0

Q ss_pred             EEEeecCCC-eeEEEeccceEEEEecCcceeeeeeeccC-CceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEee
Q 026679           19 SLCMSPVND-SFMSGSLDHSVRIWDLRVNACQGILRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV   96 (235)
Q Consensus        19 ~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~   96 (235)
                      +..|++... +..+=-..+.|.-||.++++.. .+.... ...+++.+++.++++ +.+ .+..+|..+++.........
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~   98 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELES   98 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSST
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeec
Confidence            456887544 4444446688999998887654 333333 334788888876665 444 58889988765311100000


Q ss_pred             cCCCcceeEEEEccCCCeEEEecC----CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEE-EeCCCCcEEEE
Q 026679           97 GGDTAEVCDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-SGSGDGTLHAW  171 (235)
Q Consensus        97 ~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~v~  171 (235)
                      ......++.+.+.|+|+..++...    .+.-.+|.+..++........   .....++|+++++.++ +-+..+.|+.|
T Consensus        99 ~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~---~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          99 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI---SIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE---SSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc---CCcceeeecCCCceEEEeecccceeeEe
Confidence            111235788999999986665432    234556666666554433221   2357799999998664 55667889999


Q ss_pred             EcCCC------ce--eeeecCCCcceeEEEeecCCCEEEEc--ccceEEeeCCCCCCCCC
Q 026679          172 NINTR------NE--VACWNGNIGVVACLKWAPRRAMFVAA--SSVLSFWIPNPSSNSTD  221 (235)
Q Consensus       172 d~~~~------~~--~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~i~iw~~~~~~~~~~  221 (235)
                      ++...      +.  .....+..+....+++.++|++.++.  ++.|..|+.++.....+
T Consensus       176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i  235 (295)
T d2ghsa1         176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARY  235 (295)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEE
T ss_pred             eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEe
Confidence            87421      11  11223345568899999999888774  47799999876654443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.6e-09  Score=78.66  Aligned_cols=148  Identities=14%  Similarity=0.162  Sum_probs=99.4

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecC---CCcceeEEEEccCCCeEEEec---------CCCcEEEE
Q 026679           60 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG---DTAEVCDIKFSNDGKSMLLTT---------TNNNIYVL  127 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~---------~d~~i~~~  127 (235)
                      ..|.+++.++. -..+|.+.+||+.+++.    ...+..   ....+....|+||+++++...         ..+.+.++
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTS----TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCC----EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCE----EEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence            45777776543 45678899999988764    211111   223567788999999988764         35779999


Q ss_pred             EcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeec-CCCc-----------------ce
Q 026679          128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIG-----------------VV  189 (235)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~-----------------~v  189 (235)
                      |+.++..............+....|||||+.||... ++.|++.+..++..+.... +...                 .-
T Consensus        97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~  175 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (465)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             EccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcccc
Confidence            999887665444444445567789999999998775 5678888887665543332 1111                 12


Q ss_pred             eEEEeecCCCEEEEcc---cceEEeeC
Q 026679          190 ACLKWAPRRAMFVAAS---SVLSFWIP  213 (235)
Q Consensus       190 ~~~~~~~~~~~l~~~~---~~i~iw~~  213 (235)
                      .++-|||||++|+...   ..+..+.+
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             ceEEECCCCCeEEEEEecccccceeec
Confidence            4678999999999875   33444443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.50  E-value=4e-05  Score=56.14  Aligned_cols=179  Identities=11%  Similarity=0.063  Sum_probs=113.3

Q ss_pred             eEEEeccceEEEEecCcceeeeeeeccC-------------------------------------------CceEEEcC-
Q 026679           29 FMSGSLDHSVRIWDLRVNACQGILRLRG-------------------------------------------RPTVAFDQ-   64 (235)
Q Consensus        29 l~s~~~d~~i~vwd~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~-   64 (235)
                      |.||+..|.|+|+-+.+++.+..+..-.                                           .+.+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            6788999999999887776665543210                                           01133322 


Q ss_pred             --CCCEEEEEe-cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEcc--CCCeEEEecCC------------------
Q 026679           65 --QGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTN------------------  121 (235)
Q Consensus        65 --~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d------------------  121 (235)
                        ||+++++.. .++.|.+.|+...+...   .........+..+...+  +-.+++..+..                  
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~k---Ii~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDA---ILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEE---EEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeE---EEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence              678777776 57899999998866411   11223344556555544  45566665542                  


Q ss_pred             CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCC---------------cEEEEEc-------------
Q 026679          122 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG---------------TLHAWNI-------------  173 (235)
Q Consensus       122 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~v~d~-------------  173 (235)
                      +.+..+|..+.+..........   ...+.++|+|+++++.+.+.               .+.+++.             
T Consensus       173 ~~~t~ID~~tm~V~~QV~V~g~---ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~  249 (459)
T d1fwxa2         173 NVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  249 (459)
T ss_dssp             EEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             eEEEEEecCCceEEEEeeeCCC---hhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcE
Confidence            2367889988887776666543   45689999999998875431               1344443             


Q ss_pred             ----------CCC---ceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCC
Q 026679          174 ----------NTR---NEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPN  214 (235)
Q Consensus       174 ----------~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~  214 (235)
                                +..   ..+..+. -......+..+|||+++++++   .++.|+|++
T Consensus       250 eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         250 ELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             EeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence                      211   1111121 123457889999999999998   779999985

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.28  E-value=3.5e-05  Score=53.59  Aligned_cols=111  Identities=15%  Similarity=0.191  Sum_probs=72.6

Q ss_pred             EEcCC--CCEEEEEecCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC-C-----CcEEEEEcCCC
Q 026679           61 AFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N-----NNIYVLDAYGG  132 (235)
Q Consensus        61 ~~~~~--~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~~~d~~~~  132 (235)
                      .++|+  |+.++..+ +|.|.+.|+..++.     ..+..+.......+|+|||+.|+.... +     ..|.+++..++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-----~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-----RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-----EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-----EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            45788  98888764 46788889987653     344556677888999999999987543 1     24888888777


Q ss_pred             ceeeeeccCC----CCCcceeeEEeCCCcEEEEeCC------CCcEEEEEcCCCc
Q 026679          133 EKRCGFSLEP----SPNTNTEATFTPDGQYVVSGSG------DGTLHAWNINTRN  177 (235)
Q Consensus       133 ~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~------dg~i~v~d~~~~~  177 (235)
                      +..+......    .........|+|+|+.|+....      ...+...+...+.
T Consensus        79 ~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  133 (281)
T d1k32a2          79 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN  133 (281)
T ss_dssp             EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred             ceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence            7654322111    1123456789999999887533      2235555554444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=0.00056  Score=47.26  Aligned_cols=197  Identities=12%  Similarity=0.020  Sum_probs=118.6

Q ss_pred             ccccceeEEEeecCCCeeEEE-eccceEEEEecCcceeeeeeecc--CCceEEEcCCCCEEEEE-ecCCeEEEEeccCCC
Q 026679           12 GHKERVISLCMSPVNDSFMSG-SLDHSVRIWDLRVNACQGILRLR--GRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYD   87 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~   87 (235)
                      .+...+.+++|.+..+.++-. ..++.|+..+++.......+...  ....+++++-+..|..+ ...+.|.+.++....
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            344567789999877766654 45677888888765544444332  22348888766555544 557799999987644


Q ss_pred             CCCceeEeecCCCcceeEEEEccCCCeEEEecC---CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe-C
Q 026679           88 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG-S  163 (235)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~  163 (235)
                      .    .............+++.|...+++....   ...|...++....... +.. ..-.....+++++.++.|+.+ .
T Consensus       113 ~----~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~-i~~-~~~~~P~glaiD~~~~~lYw~d~  186 (263)
T d1npea_         113 R----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-LAQ-DNLGLPNGLTFDAFSSQLCWVDA  186 (263)
T ss_dssp             C----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-EEC-TTCSCEEEEEEETTTTEEEEEET
T ss_pred             E----EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee-eee-ecccccceEEEeecCcEEEEEeC
Confidence            3    2222233356789999997776665433   2346556665443322 221 222346789999877777554 5


Q ss_pred             CCCcEEEEEcCCCceeeeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCCC
Q 026679          164 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS  217 (235)
Q Consensus       164 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~~  217 (235)
                      ..+.|...++........+.+.. ...+|++.  +..|..++   +.|...+..++.
T Consensus       187 ~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         187 GTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             TTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCc
Confidence            67889999986544433344332 34578776  34444443   556666665443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.99  E-value=0.00081  Score=49.22  Aligned_cols=187  Identities=13%  Similarity=0.100  Sum_probs=110.6

Q ss_pred             EEEeec---CCCeeEEEe-ccceEEEEecCcceeeeeeeccCCc---eEEEc--CCCCEEEEEecC--------------
Q 026679           19 SLCMSP---VNDSFMSGS-LDHSVRIWDLRVNACQGILRLRGRP---TVAFD--QQGLVFAVAMEA--------------   75 (235)
Q Consensus        19 ~~~~~~---~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~--~~~~~l~~~~~d--------------   75 (235)
                      .+++..   ||++|+... .+.+|.+-|+++.++.+.+..+...   .+...  |+-.+++..+..              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            445543   688876654 6789999999999887766554322   24443  455666666552              


Q ss_pred             ----CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCC-----------------------------
Q 026679           76 ----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-----------------------------  122 (235)
Q Consensus        76 ----g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------------  122 (235)
                          +.+.++|..+.+.  .......   .....+.++++|+++++.+.+.                             
T Consensus       169 ~~y~~~~t~ID~~tm~V--~~QV~V~---g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av  243 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEV--AWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  243 (459)
T ss_dssp             G-EEEEEEEEETTTTEE--EEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             hhcceEEEEEecCCceE--EEEeeeC---CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh
Confidence                2356677776543  1122222   3456789999999988876431                             


Q ss_pred             ---------cEEEEEcCCC---ceeeeeccCCCCCcceeeEEeCCCcEEEEeC-CCCcEEEEEcCCCcee----------
Q 026679          123 ---------NIYVLDAYGG---EKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEV----------  179 (235)
Q Consensus       123 ---------~i~~~d~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~----------  179 (235)
                               .+.+.|.+..   ..+..+...   .....+.++|||+++++++ .+..+.|+|++.....          
T Consensus       244 ~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp---KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         244 AAGDYQELNGVKVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             HHTCSEEETTEEEEECSGG--CSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             hcCCcEEeCCceeecccccCCcceeEEEecC---CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence                     1333343321   111111111   2245689999999987655 5889999999642211          


Q ss_pred             --eeecCCCcceeEEEeecCCCEEEEc--ccceEEeeCC
Q 026679          180 --ACWNGNIGVVACLKWAPRRAMFVAA--SSVLSFWIPN  214 (235)
Q Consensus       180 --~~~~~~~~~v~~~~~~~~~~~l~~~--~~~i~iw~~~  214 (235)
                        .+.+ ..-....-+|...|....+-  ++.+.-|++.
T Consensus       321 ~~~e~e-lglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         321 VVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             EEeecc-cCcCccccccCCCceEEEEeeccceEEEEecc
Confidence              1111 12234566788887544442  3778889874

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=0.0018  Score=44.76  Aligned_cols=182  Identities=9%  Similarity=-0.017  Sum_probs=107.8

Q ss_pred             ceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEe-cCCeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCC
Q 026679           36 HSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK  113 (235)
Q Consensus        36 ~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  113 (235)
                      ..|+-.++++.+....+....... ++|++..+.+.... ..+.|.-.++...................+..+++.+.++
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            358888887765544444333223 88888777666654 4566776666543221112222333334567888887666


Q ss_pred             eEEEe-cCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe--CCCCcEEEEEcCCCceeeeecCCCccee
Q 026679          114 SMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG--SGDGTLHAWNINTRNEVACWNGNIGVVA  190 (235)
Q Consensus       114 ~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~v~  190 (235)
                      .|..+ ...+.|.+.++...........  .......++++|...+|...  +..+.|.-.++............-..+.
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~--~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~  167 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  167 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcC--CCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceee
Confidence            56555 4567899999876654433332  22447889999966666543  3345677777744333333333335678


Q ss_pred             EEEeecCCCEEEEcc---cceEEeeCCCCCCC
Q 026679          191 CLKWAPRRAMFVAAS---SVLSFWIPNPSSNS  219 (235)
Q Consensus       191 ~~~~~~~~~~l~~~~---~~i~iw~~~~~~~~  219 (235)
                      ++++.+.+..|..++   +.|...++++....
T Consensus       168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~  199 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  199 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             EEEeeccccEEEEecCCcCEEEEEECCCCCEE
Confidence            999999887777765   56777788765433

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.65  E-value=0.0055  Score=45.36  Aligned_cols=207  Identities=9%  Similarity=-0.004  Sum_probs=110.4

Q ss_pred             ccccceeEEEeecCCCeeEEE-ecc----ceEEEEecCcceeeee-eeccCCceEEEcCCCCEEEEEecC----------
Q 026679           12 GHKERVISLCMSPVNDSFMSG-SLD----HSVRIWDLRVNACQGI-LRLRGRPTVAFDQQGLVFAVAMEA----------   75 (235)
Q Consensus        12 ~h~~~v~~~~~~~~~~~l~s~-~~d----~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d----------   75 (235)
                      ++.-.+...+++|++++++.+ +..    ..++++|+.+++.+.. +.......++|.++++.|+-...+          
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            333345567889999887743 333    3699999999987643 333333558999999987765432          


Q ss_pred             ------CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC---CCc--EEEEEcCCCceee------ee
Q 026679           76 ------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNN--IYVLDAYGGEKRC------GF  138 (235)
Q Consensus        76 ------g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~--i~~~d~~~~~~~~------~~  138 (235)
                            ..+..+.+.+........+........+..+..++++++++....   +..  +.+.|+.......      ..
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                  257777776654332223322223345667778999998775432   233  4555554321100      00


Q ss_pred             ccCCCCCcceeeEEeCCCcEEEEeC---CCCcEEEEEcCCCce---eeeecCCCcceeEEEeecCCCEEEEcc-----cc
Q 026679          139 SLEPSPNTNTEATFTPDGQYVVSGS---GDGTLHAWNINTRNE---VACWNGNIGVVACLKWAPRRAMFVAAS-----SV  207 (235)
Q Consensus       139 ~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~  207 (235)
                      ......... ...-+.++.+++...   .++.|...++.+...   ...+..+...+..-.+...+.+|+..-     ..
T Consensus       282 ~~~~~~~~~-~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~  360 (430)
T d1qfma1         282 LIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (430)
T ss_dssp             EECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             eecccccce-EEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeE
Confidence            011111111 122223334444333   246677777765432   122333444454444444555555442     45


Q ss_pred             eEEeeCCCCCCC
Q 026679          208 LSFWIPNPSSNS  219 (235)
Q Consensus       208 i~iw~~~~~~~~  219 (235)
                      |++++++++...
T Consensus       361 l~v~~~~~~~~~  372 (430)
T d1qfma1         361 LQLHDLATGALL  372 (430)
T ss_dssp             EEEEETTTCCEE
T ss_pred             EEEEECCCCcEE
Confidence            888988776543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.0064  Score=41.82  Aligned_cols=173  Identities=13%  Similarity=0.050  Sum_probs=100.1

Q ss_pred             cceeEEEeecCCCeeE-EEeccceEEEEecCcceeeeeeeccC-C-ceEEEcCCCCEEEEEec--CCeEEEEeccCCCCC
Q 026679           15 ERVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLRG-R-PTVAFDQQGLVFAVAME--AGAIKLFDSRSYDKG   89 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~   89 (235)
                      ..+.++++.+-++.|+ +-...+.|.+.++........+.... . ..++++|...++.....  .+.|.-.++..... 
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-  155 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-  155 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-
Confidence            3456788876555554 44556789999987655444444322 2 23888886655555543  34565556544321 


Q ss_pred             CceeEeecCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcE
Q 026679           90 PFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL  168 (235)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  168 (235)
                         .......-.....+++.+.++.|+.+ ...+.|...++....................+++. ++....+-..++.|
T Consensus       156 ---~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I  231 (266)
T d1ijqa1         156 ---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI  231 (266)
T ss_dssp             ---EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             ---ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeE
Confidence               22222333556889999877766665 55788999998665443333333222334556665 33444444567888


Q ss_pred             EEEEcCCCceeeeecCCCcceeEE
Q 026679          169 HAWNINTRNEVACWNGNIGVVACL  192 (235)
Q Consensus       169 ~v~d~~~~~~~~~~~~~~~~v~~~  192 (235)
                      ...+..++.....+......+..+
T Consensus       232 ~~~~~~~g~~~~~~~~~~~~p~~i  255 (266)
T d1ijqa1         232 FSANRLTGSDVNLLAENLLSPEDM  255 (266)
T ss_dssp             EEEETTTCCCCEEEECSCSCCCCE
T ss_pred             EEEECCCCcceEEEEcCCCCceEE
Confidence            888887777665554433333333

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=0.0068  Score=42.08  Aligned_cols=174  Identities=9%  Similarity=0.066  Sum_probs=104.3

Q ss_pred             EEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce-EEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEeecC
Q 026679           20 LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG   98 (235)
Q Consensus        20 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~   98 (235)
                      .-.+|..+.||.-+ ..++.++|+++.+.++.+...+..+ ..|-.+.. |+..+ +..|+-|+++... .+...+....
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~-L~lVT-~taVYHW~~~g~s-~P~k~fdR~~  143 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES-QPVKMFDRHS  143 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSE-EEEEC-SSEEEEEESSSSC-CCEEEEECCG
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCE-EEEEc-CCceEEEcccCCC-Cchhhhhhcc
Confidence            44678777766555 5689999999999999988876444 67765544 33333 4579999996543 3333332211


Q ss_pred             --CCcceeEEEEccCCCeEEEecC-------CCcEEEEEcCCCce-----------------------------------
Q 026679           99 --DTAEVCDIKFSNDGKSMLLTTT-------NNNIYVLDAYGGEK-----------------------------------  134 (235)
Q Consensus        99 --~~~~v~~~~~~~~~~~l~~~~~-------d~~i~~~d~~~~~~-----------------------------------  134 (235)
                        ....|..-..+++.++++..+-       .|.+.+|....+..                                   
T Consensus       144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~  223 (327)
T d1utca2         144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  223 (327)
T ss_dssp             GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred             cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCc
Confidence              1245556666777777665431       35567776543211                                   


Q ss_pred             -eeeeccCC---------------------CCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcceeEE
Q 026679          135 -RCGFSLEP---------------------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACL  192 (235)
Q Consensus       135 -~~~~~~~~---------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~  192 (235)
                       ++.++...                     ...-..++..++.-..+..-+.-|.|++||+.++.++..-+-....|..-
T Consensus       224 kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~  303 (327)
T d1utca2         224 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  303 (327)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEe
Confidence             00111100                     01222345555555677788889999999999999887765555555544


Q ss_pred             EeecC
Q 026679          193 KWAPR  197 (235)
Q Consensus       193 ~~~~~  197 (235)
                      +-+.+
T Consensus       304 a~~~~  308 (327)
T d1utca2         304 APHEA  308 (327)
T ss_dssp             EEETT
T ss_pred             ccCCC
Confidence            33333

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=0.01  Score=42.94  Aligned_cols=179  Identities=11%  Similarity=0.047  Sum_probs=100.3

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCc-----------ceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEec
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRV-----------NACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDS   83 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~   83 (235)
                      ....-+++++...+++.|+.++ ++|-.++.           ..............++|+.+  .+++. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            4566788888777888888875 56766421           11111222222333677544  45444 4566788887


Q ss_pred             cCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeecc---CCCCCcceeeEEeCCCcEEE
Q 026679           84 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL---EPSPNTNTEATFTPDGQYVV  160 (235)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~  160 (235)
                      .....    .........++..+.++|.  .++....++.+.++++..++.......   -.-.+.+.+++|++.|..++
T Consensus       113 ~~l~~----~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         113 EELSE----FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             SSTTC----EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred             ecccc----ccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEE
Confidence            66432    2222233456777887774  466677789999999988764332110   00114467788888888777


Q ss_pred             EeCCCCcEEE-EEcCCCceeeeecCCCcceeEEEeecCCCEEEEc
Q 026679          161 SGSGDGTLHA-WNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA  204 (235)
Q Consensus       161 ~~~~dg~i~v-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  204 (235)
                      ++..++ ..+ -++.....+.........+.+|.|-.+..++++-
T Consensus       187 ~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         187 AWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            764332 111 1221111111111233467888888777766654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.41  E-value=0.0062  Score=44.02  Aligned_cols=154  Identities=12%  Similarity=0.038  Sum_probs=90.5

Q ss_pred             EEeecCCCeeEEEeccc-----------eEEEEecCcceeeee--eec-cCC--ceEEEcCCCCEEEEEecC-CeEEEEe
Q 026679           20 LCMSPVNDSFMSGSLDH-----------SVRIWDLRVNACQGI--LRL-RGR--PTVAFDQQGLVFAVAMEA-GAIKLFD   82 (235)
Q Consensus        20 ~~~~~~~~~l~s~~~d~-----------~i~vwd~~~~~~~~~--~~~-~~~--~~~~~~~~~~~l~~~~~d-g~v~i~d   82 (235)
                      .....+|+.++.|+.+.           .+.+||..+++-...  ... +..  ...++.+++++++.|+.+ ..+.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            33445778888777421           367899987753322  222 222  236788999999988765 6899999


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC------CcEEEEEcCCCceeeeeccCC------CC------
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEP------SP------  144 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~------~~------  144 (235)
                      ..+.......  .+ .....-...+..+||+.++.++.+      ..+.+||..+.+....-....      ..      
T Consensus       105 ~~~~~w~~~~--~~-~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~  181 (387)
T d1k3ia3         105 SSSDSWIPGP--DM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  181 (387)
T ss_dssp             GGGTEEEECC--CC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             CccCcccccc--cc-cccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeec
Confidence            8875431111  11 111223456677899988888753      358999998876432211100      00      


Q ss_pred             CcceeeEEeCCCcEEEEeCCCCcEEEEEcCCC
Q 026679          145 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTR  176 (235)
Q Consensus       145 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  176 (235)
                      ..-..+...++|+.+..+..++.+.+++..+.
T Consensus       182 ~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         182 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             cceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence            00111233456777777777777777776554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.41  E-value=0.0057  Score=46.95  Aligned_cols=52  Identities=23%  Similarity=0.302  Sum_probs=37.7

Q ss_pred             ccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-EEEE
Q 026679          109 SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVS  161 (235)
Q Consensus       109 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~  161 (235)
                      .-.+.++++++.||.++.+|..+|+.+-.+.+.... .-.-+.+..+|+ ||++
T Consensus       466 ~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~-~~~P~ty~~dGkqyv~v  518 (560)
T d1kv9a2         466 STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGI-VAAPMTFELAGRQYVAI  518 (560)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEEE
T ss_pred             EECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCc-cccCEEEEECCEEEEEE
Confidence            335667888999999999999999999888776432 122366767886 5543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.26  E-value=0.014  Score=42.13  Aligned_cols=116  Identities=9%  Similarity=0.046  Sum_probs=75.9

Q ss_pred             EEEcCCCCEEEEEecCC-----------eEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCC-CcEEEE
Q 026679           60 VAFDQQGLVFAVAMEAG-----------AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-NNIYVL  127 (235)
Q Consensus        60 ~~~~~~~~~l~~~~~dg-----------~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~  127 (235)
                      .+...++++++.|+.+.           .+.+||..+.......... ..+.......++.+++..++.|+.+ ..+.+|
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC-CCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            44455788888877421           3678999887654332222 2233334456788999988888664 579999


Q ss_pred             EcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC------CcEEEEEcCCCc
Q 026679          128 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD------GTLHAWNINTRN  177 (235)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~  177 (235)
                      |..+......-.... ...-..++..+||++++.|+.+      ..+.+||..+.+
T Consensus       104 d~~~~~w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         104 DSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cCccCcccccccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            998876654332222 2233457778899999998753      358899987653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.26  E-value=0.016  Score=41.46  Aligned_cols=186  Identities=12%  Similarity=0.156  Sum_probs=108.2

Q ss_pred             cCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEE------EcCCCCEEEEEec--C--CeEEEEeccCCCCCCcee
Q 026679           24 PVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVA------FDQQGLVFAVAME--A--GAIKLFDSRSYDKGPFDT   93 (235)
Q Consensus        24 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~--d--g~v~i~d~~~~~~~~~~~   93 (235)
                      |+..+++.....+-|.+||++ |+.+..+.....+-+.      +.....-+++++.  +  ..+.+|.+.....   ..
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~---~l  113 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---TL  113 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT---EE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc---cc
Confidence            345677777777779999984 7777777654433322      2222223444442  2  3677887754321   01


Q ss_pred             EeecC-------CCcceeEEEE--ccC-CC-eEEEecCCCcEEEEEcC---CC----ceeeeeccCCCCCcceeeEEeCC
Q 026679           94 FLVGG-------DTAEVCDIKF--SND-GK-SMLLTTTNNNIYVLDAY---GG----EKRCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus        94 ~~~~~-------~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      .....       ....+..+++  ++. +. ++++...+|.+..|.+.   .+    +.+..+...   ..+..|.+.+.
T Consensus       114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~---~q~EGCVvDde  190 (353)
T d1h6la_         114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN---SQTEGMAADDE  190 (353)
T ss_dssp             EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS---SCEEEEEEETT
T ss_pred             ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC---CccceEEEeCC
Confidence            11111       1123566666  554 44 45666778998888763   22    223334333   45888999999


Q ss_pred             CcEEEEeCCCCcEEEEEcCC-----CceeeeecC--CCcceeEEEeec--CC-CEEEEcc---cceEEeeCCCC
Q 026679          156 GQYVVSGSGDGTLHAWNINT-----RNEVACWNG--NIGVVACLKWAP--RR-AMFVAAS---SVLSFWIPNPS  216 (235)
Q Consensus       156 ~~~l~~~~~dg~i~v~d~~~-----~~~~~~~~~--~~~~v~~~~~~~--~~-~~l~~~~---~~i~iw~~~~~  216 (235)
                      ...|+.+-++.-|..++...     +..+....+  ....+..|+...  ++ .+|++++   +...+|+..+.
T Consensus       191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            99999998887676666541     122222221  345677887664  32 3666665   66999987653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.19  E-value=0.029  Score=43.09  Aligned_cols=79  Identities=15%  Similarity=0.115  Sum_probs=50.0

Q ss_pred             CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCc-ceeEEEeecCCC-
Q 026679          122 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRA-  199 (235)
Q Consensus       122 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~-  199 (235)
                      |.|.-+|+.+++..-.......   ..+-.++-.+.++++|+.||.++.+|.++|+.+-++..... .-.-+.|..+|+ 
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~---~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeccCCCceeeEcCCCCC---CCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            4677888888887765543322   12222333466788899999999999999999977753211 111245555775 


Q ss_pred             EEEE
Q 026679          200 MFVA  203 (235)
Q Consensus       200 ~l~~  203 (235)
                      |+++
T Consensus       521 Yi~v  524 (571)
T d2ad6a1         521 YIGS  524 (571)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.18  E-value=0.0071  Score=46.64  Aligned_cols=80  Identities=15%  Similarity=0.297  Sum_probs=54.8

Q ss_pred             CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcc-eeEEEeecCCC
Q 026679          121 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRA  199 (235)
Q Consensus       121 d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~  199 (235)
                      .|.|.-+|+.+++..-.+....   ++..-.++..+.++++|+.||.++.+|.++|+.+-+++..... -.-+.+..+|+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~---p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL---PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS---CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC---CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            3678889999998877665432   2333334557778889999999999999999999777633211 11256667885


Q ss_pred             -EEEE
Q 026679          200 -MFVA  203 (235)
Q Consensus       200 -~l~~  203 (235)
                       |++.
T Consensus       542 qYv~i  546 (582)
T d1flga_         542 QYLGV  546 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             4443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.021  Score=39.05  Aligned_cols=175  Identities=6%  Similarity=-0.017  Sum_probs=103.1

Q ss_pred             cceeEEEeecCCCeeE-EEeccceEEEEecCcceeeeeeecc--CCceEEEcCCCCEEEEEecC-CeEEEE--eccCCCC
Q 026679           15 ERVISLCMSPVNDSFM-SGSLDHSVRIWDLRVNACQGILRLR--GRPTVAFDQQGLVFAVAMEA-GAIKLF--DSRSYDK   88 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d-g~v~i~--d~~~~~~   88 (235)
                      ..+.++++..-++.|+ +-...+.|.+.++........+...  ....++++|...+++..... +..+++  ++.....
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            4567888876555554 4455678999988655433333222  12238899977666655432 333344  4443322


Q ss_pred             CCceeEeecCCCcceeEEEEccCCCeEEEe-cCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCc
Q 026679           89 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT  167 (235)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  167 (235)
                          .......-.....+++.+.++.|+.+ ...+.|...|+.............+   ...+++. ++.+..+-...+.
T Consensus       159 ----~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~---P~~lav~-~~~lYwtd~~~~~  230 (263)
T d1npea_         159 ----RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY---PFAVTSY-GKNLYYTDWKTNS  230 (263)
T ss_dssp             ----EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS---EEEEEEE-TTEEEEEETTTTE
T ss_pred             ----eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC---cEEEEEE-CCEEEEEECCCCE
Confidence                22222233456789999877777555 4577899999866554433332222   3567775 3444455556788


Q ss_pred             EEEEEcCCCceeeeecC-CCcceeEEEeecC
Q 026679          168 LHAWNINTRNEVACWNG-NIGVVACLKWAPR  197 (235)
Q Consensus       168 i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~  197 (235)
                      |...|..+++.+..+.. ......+|...++
T Consensus       231 I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         231 VIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             EEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence            99999988887766542 2335556666553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.93  E-value=0.023  Score=43.61  Aligned_cols=169  Identities=13%  Similarity=0.112  Sum_probs=92.9

Q ss_pred             eeEEEeccceEEEEecCcceeeeeeeccCC-------------------------------------ceEEEcCCCCEEE
Q 026679           28 SFMSGSLDHSVRIWDLRVNACQGILRLRGR-------------------------------------PTVAFDQQGLVFA   70 (235)
Q Consensus        28 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~l~   70 (235)
                      .++.++.+|.+.++|..+++.+........                                     ...+++|+...++
T Consensus       329 ~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~y  408 (573)
T d1kb0a2         329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVY  408 (573)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEE
T ss_pred             eeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEE
Confidence            577788999999999999887654432110                                     0146777777777


Q ss_pred             EEecCCeEEEEeccCCCCCCceeEeecCCCc-ceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCccee
Q 026679           71 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA-EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE  149 (235)
Q Consensus        71 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~  149 (235)
                      ....+....+......+.......  ..... ......+ +.+. -.....-|.+.-||+.+++.+-.+.....   ...
T Consensus       409 v~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~-p~~~~~~G~l~AiD~~tGk~~W~~~~~~p---~~g  481 (573)
T d1kb0a2         409 LPAQNVPVNLMDDKKWEFNQAGPG--KPQSGTGWNTAKF-FNAE-PPKSKPFGRLLAWDPVAQKAAWSVEHVSP---WNG  481 (573)
T ss_dssp             EEEEECCCEEEECTTCCTTCCCTT--STTGGGTCCCCEE-ECSS-CCCSCCEEEEEEEETTTTEEEEEEEESSS---CCC
T ss_pred             eeccccceeeecccccccccCCCC--ccccccccccccc-cccC-CCCCCCcccEEEeCCCCCceEeeecCCCC---CCC
Confidence            666665555554433221000000  00000 0000000 0000 00011125788899999988776654322   122


Q ss_pred             eEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcce-eEEEeecCCC-EEEE
Q 026679          150 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV-ACLKWAPRRA-MFVA  203 (235)
Q Consensus       150 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~l~~  203 (235)
                      -..+-.+.++++|+.||.++.+|.++|+.+-++....+.. .=+.|..+|+ ||+.
T Consensus       482 g~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v  537 (573)
T d1kb0a2         482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (573)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             ceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            2334467788899999999999999999997775322111 1144555776 4433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.82  E-value=0.031  Score=42.85  Aligned_cols=50  Identities=20%  Similarity=0.359  Sum_probs=37.1

Q ss_pred             CCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-EEEE
Q 026679          111 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVS  161 (235)
Q Consensus       111 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~  161 (235)
                      .+..+++++.|+.++.+|.++|+.+-++.+.... ...-+.|..+|+ |+++
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~-~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG-IGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc-eecceEEEECCEEEEEE
Confidence            4667888999999999999999999888776432 223367777886 4443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.75  E-value=0.05  Score=38.71  Aligned_cols=156  Identities=10%  Similarity=0.092  Sum_probs=86.0

Q ss_pred             EEEcCCCCEEEEEe------------cCCeEEEEeccCCCCCCceeEeecCC----CcceeEEEE--ccCCCe-EEEe--
Q 026679           60 VAFDQQGLVFAVAM------------EAGAIKLFDSRSYDKGPFDTFLVGGD----TAEVCDIKF--SNDGKS-MLLT--  118 (235)
Q Consensus        60 ~~~~~~~~~l~~~~------------~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~v~~~~~--~~~~~~-l~~~--  118 (235)
                      ++..|+|..+++++            ..|.+.++|+.+..............    ......+.+  .++|.. |++.  
T Consensus        40 i~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH  119 (340)
T d1v04a_          40 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH  119 (340)
T ss_dssp             EEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred             EEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEec
Confidence            56667666665543            24889999988765422221111111    112233433  345553 3333  


Q ss_pred             -cCCCcEEEEEcCCCc--eeeeecc-CCCCCcceeeEEeCCCcEEEEeCC---------------CCcEEEEEcCCCcee
Q 026679          119 -TTNNNIYVLDAYGGE--KRCGFSL-EPSPNTNTEATFTPDGQYVVSGSG---------------DGTLHAWNINTRNEV  179 (235)
Q Consensus       119 -~~d~~i~~~d~~~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~v~d~~~~~~~  179 (235)
                       ....+|.+|++....  ....-.. +......+.+++..++.++++-..               -+.-.+|....++..
T Consensus       120 ~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~  199 (340)
T d1v04a_         120 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR  199 (340)
T ss_dssp             STTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE
T ss_pred             cCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE
Confidence             235668888775433  2211111 222345788999999998888321               123344444333332


Q ss_pred             eeecCCCcceeEEEeecCCCEEEEcc---cceEEeeCCCC
Q 026679          180 ACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPS  216 (235)
Q Consensus       180 ~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~iw~~~~~  216 (235)
                       .....-.....|+++||+++|+.+.   +.|++|+++..
T Consensus       200 -~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         200 -VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             -EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             -EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence             2222334678999999999888876   66888888654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.69  E-value=0.081  Score=40.41  Aligned_cols=78  Identities=13%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             CcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCCCcEEEEEcCCCceeeeecCCCcc-eeEEEeecCCC-
Q 026679          122 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRA-  199 (235)
Q Consensus       122 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~-  199 (235)
                      |.+.-+|+.+++..-.+.....   ...-.+.-.+.+++.|+.||.++.+|.++|+.+-++...... -.-+.+..+|+ 
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEeCCCCeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            5688899999988776665432   222234445678888999999999999999999777533211 11144556775 


Q ss_pred             EEE
Q 026679          200 MFV  202 (235)
Q Consensus       200 ~l~  202 (235)
                      ||+
T Consensus       515 yv~  517 (560)
T d1kv9a2         515 YVA  517 (560)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.33  E-value=0.092  Score=40.41  Aligned_cols=50  Identities=20%  Similarity=0.322  Sum_probs=36.7

Q ss_pred             cCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-EEE
Q 026679          110 NDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVV  160 (235)
Q Consensus       110 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  160 (235)
                      ..+..++.++.||.++.+|.++|+.+-++...... ...-+.|..+|+ |++
T Consensus       482 TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~-~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA-IGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEE
T ss_pred             ecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCc-ccCCeEEEECCEEEEE
Confidence            35677888999999999999999999888765432 122366767876 444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.19  E-value=0.12  Score=36.71  Aligned_cols=184  Identities=15%  Similarity=0.143  Sum_probs=100.5

Q ss_pred             eEEEeecCCCeeEEEec------------cceEEEEecCcceee-eeee--ccC------Cce-EE--EcCCCC-EEEEE
Q 026679           18 ISLCMSPVNDSFMSGSL------------DHSVRIWDLRVNACQ-GILR--LRG------RPT-VA--FDQQGL-VFAVA   72 (235)
Q Consensus        18 ~~~~~~~~~~~l~s~~~------------d~~i~vwd~~~~~~~-~~~~--~~~------~~~-~~--~~~~~~-~l~~~   72 (235)
                      -++...|+|..+++++.            .|.|.++|+.+.... ..+.  ...      .+- +.  -.+++. +|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            45778888877666542            388999998765321 1111  111      111 22  244555 34444


Q ss_pred             e---cCCeEEEEeccCCCCCCceeEeec-CCCcceeEEEEccCCCeEEEecC---------------CCcEEEEEcCCCc
Q 026679           73 M---EAGAIKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTT---------------NNNIYVLDAYGGE  133 (235)
Q Consensus        73 ~---~dg~v~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---------------d~~i~~~d~~~~~  133 (235)
                      .   ...+|.+|++.............. ......+++++..++..+++-..               -+...+|....++
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence            3   356788888865443111111111 22245788999888887777321               1223333333333


Q ss_pred             eeeeeccCCCCCcceeeEEeCCCcEEEEe-CCCCcEEEEEcCCCceeeee--cCCCcceeEEEeec-CCCEEEEc
Q 026679          134 KRCGFSLEPSPNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACW--NGNIGVVACLKWAP-RRAMFVAA  204 (235)
Q Consensus       134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~  204 (235)
                      ......   .-...+.++++|++++|+++ +..+.|++|++.....+...  ..-.+.+-.+.+.+ ++.+.+++
T Consensus       198 ~~~~~~---~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         198 VRVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             eEEEcC---CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            222111   11346889999999877554 56788999998744322211  12345677888876 45555554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.92  E-value=0.2  Score=37.03  Aligned_cols=36  Identities=8%  Similarity=0.111  Sum_probs=28.4

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeee
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQG   50 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~   50 (235)
                      ..-++|+|.|++++|++--..|.|++++..++....
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~   62 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT   62 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEee
Confidence            456799999999988877567999999887765443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.87  E-value=0.073  Score=40.87  Aligned_cols=52  Identities=19%  Similarity=0.313  Sum_probs=38.7

Q ss_pred             ccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCc-EEEE
Q 026679          109 SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVS  161 (235)
Q Consensus       109 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~  161 (235)
                      +..+..+++++.||.++.+|.++|+.+-.+...... .-.-+.|..+|+ |++.
T Consensus       494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~-~~~P~ty~~~G~qYv~i  546 (582)
T d1flga_         494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI-VSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEEE
T ss_pred             EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCc-cccCEEEEECCEEEEEE
Confidence            346778888999999999999999999888875432 122377778885 4443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.75  E-value=0.24  Score=36.60  Aligned_cols=53  Identities=9%  Similarity=0.100  Sum_probs=34.7

Q ss_pred             eEEEcCCCCEEEEEecCCeEEEEeccCCCCCCceeEe----ecCCCcceeEEEEccC
Q 026679           59 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL----VGGDTAEVCDIKFSND  111 (235)
Q Consensus        59 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~  111 (235)
                      .++|.|++++|++--..|.|++++..+..........    ..........++++|+
T Consensus        31 ~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          31 ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             EEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4999999998877766799999987765431111100    1122356778999985

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.58  E-value=0.69  Score=35.41  Aligned_cols=152  Identities=13%  Similarity=0.118  Sum_probs=91.1

Q ss_pred             CeeEEEeccceEEEEecCcceeeeeeeccCCc---eEEEcC--CCCEEEEEec------CCeEEEEeccCCCCCCceeEe
Q 026679           27 DSFMSGSLDHSVRIWDLRVNACQGILRLRGRP---TVAFDQ--QGLVFAVAME------AGAIKLFDSRSYDKGPFDTFL   95 (235)
Q Consensus        27 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~--~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~   95 (235)
                      .+++.++.|+.|.-.|.++++....+......   .+.-.|  .+..++++..      .|.|+-+|+.+++..-  .+.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W--~~~  199 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVW--RAY  199 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEE--EEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEE--Eee
Confidence            36888899999999999999988877543211   111111  2334555543      4889999999877511  111


Q ss_pred             ecC------------------------------------CCcceeEEEEccCCCeEEEecC----------------CCc
Q 026679           96 VGG------------------------------------DTAEVCDIKFSNDGKSMLLTTT----------------NNN  123 (235)
Q Consensus        96 ~~~------------------------------------~~~~v~~~~~~~~~~~l~~~~~----------------d~~  123 (235)
                      ...                                    ....-..+++.+....++.+..                ...
T Consensus       200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~s  279 (596)
T d1w6sa_         200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT  279 (596)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             ccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccc
Confidence            000                                    0001123455565555555432                234


Q ss_pred             EEEEEcCCCceeeeeccCCCCCc-------ceeeEE-eCCC---cEEEEeCCCCcEEEEEcCCCceee
Q 026679          124 IYVLDAYGGEKRCGFSLEPSPNT-------NTEATF-TPDG---QYVVSGSGDGTLHAWNINTRNEVA  180 (235)
Q Consensus       124 i~~~d~~~~~~~~~~~~~~~~~~-------i~~~~~-~~~~---~~l~~~~~dg~i~v~d~~~~~~~~  180 (235)
                      |.-.|+++++..-.++...|...       ..-+.. ..+|   +.++....+|.++++|..+++.+.
T Consensus       280 ivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceee
Confidence            88899999998876665444311       111111 2244   367788999999999999998764

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.80  E-value=0.76  Score=32.94  Aligned_cols=141  Identities=8%  Similarity=0.030  Sum_probs=76.1

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccCCCCCCcee-E
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT-F   94 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~   94 (235)
                      .|..++|+.+  .|+.. .++.+..++...-...........+.....+....++....++.+.++++......+... .
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v  164 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNV  164 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCc
Confidence            4788889744  45444 345677777665433333333344455555555678888889999999998765321110 0


Q ss_pred             eecCCCcceeEEEEccCCCeEEEecCCCcEEE-EEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEe
Q 026679           95 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV-LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG  162 (235)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  162 (235)
                      ....-...+.+++|++.|..++++..++ ..+ -++.....+.  ........+.++.|-.+..++++-
T Consensus       165 ~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~--~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         165 TSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELE--ELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHH--TSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccC--CCcCCCcceeEEEEecCceEEEEE
Confidence            0001124567777877777777653221 111 1111111110  011123457788888777776543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.72  Score=31.07  Aligned_cols=105  Identities=9%  Similarity=0.003  Sum_probs=52.2

Q ss_pred             CCCeEEEecC-----CCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC-----CcEEEEEcCCCceee
Q 026679          111 DGKSMLLTTT-----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNINTRNEVA  180 (235)
Q Consensus       111 ~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~  180 (235)
                      ++..++.++.     ...+..||..+.+....-.. .......+... .+++.++.|+.+     .....+|..+.+...
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~  225 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM-NTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTF  225 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             eecceEecCcccccccceEEEeecccccccccccc-ccccccccccc-eeeeEEEecCccccccccceeeeeecceeeec
Confidence            3444555544     24578888877654432211 11111122222 345666666544     346778876655433


Q ss_pred             eecCCCcceeEEEeecCCCEEEEcc-------cceEEeeCCCCC
Q 026679          181 CWNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS  217 (235)
Q Consensus       181 ~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~iw~~~~~~  217 (235)
                      .-.........-+...++++++.|+       ..+.+||++..+
T Consensus       226 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         226 VAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            2211111221122233677777775       347888887654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.28  E-value=0.8  Score=31.63  Aligned_cols=152  Identities=11%  Similarity=0.126  Sum_probs=89.4

Q ss_pred             cceeEEEeecCCCeeEEEe-------ccceEEEEecCcceeeeeeeccCCceEEEcCCC-----CEEEEEe---cCCeEE
Q 026679           15 ERVISLCMSPVNDSFMSGS-------LDHSVRIWDLRVNACQGILRLRGRPTVAFDQQG-----LVFAVAM---EAGAIK   79 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~-------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~---~dg~v~   79 (235)
                      ..|..-..++++++++..+       -.|.+.+|..+.+ ..+.+++|...-..+--+|     .+++.+.   ..+.++
T Consensus       148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLh  226 (327)
T d1utca2         148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  226 (327)
T ss_dssp             CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEE
Confidence            3566677788888866433       2467888887543 4445555543333332221     2333332   236888


Q ss_pred             EEeccCCCC--CCceeE--ee----cCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeE
Q 026679           80 LFDSRSYDK--GPFDTF--LV----GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT  151 (235)
Q Consensus        80 i~d~~~~~~--~~~~~~--~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~  151 (235)
                      +.++.....  .+....  ..    .......-++..++.-..++..+.-|.+++||+.++.++..-+.....  |...+
T Consensus       227 IiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~--iF~~a  304 (327)
T d1utca2         227 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET--IFVTA  304 (327)
T ss_dssp             EEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEE
T ss_pred             EEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCc--eEEec
Confidence            888876432  111111  11    112334556888888888999999999999999999998776665433  54444


Q ss_pred             EeCCCcEEEEeCCCCcEE
Q 026679          152 FTPDGQYVVSGSGDGTLH  169 (235)
Q Consensus       152 ~~~~~~~l~~~~~dg~i~  169 (235)
                      -+.+..-+++...+|.+.
T Consensus       305 ~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         305 PHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EETTTTEEEEEETTSEEE
T ss_pred             cCCCCceEEEECCCCeEE
Confidence            444444444444566543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.11  E-value=0.96  Score=29.59  Aligned_cols=150  Identities=19%  Similarity=0.266  Sum_probs=87.9

Q ss_pred             ceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCce------------EEEcCCCCEEEEEec-CCeEEEEe
Q 026679           16 RVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT------------VAFDQQGLVFAVAME-AGAIKLFD   82 (235)
Q Consensus        16 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~-dg~v~i~d   82 (235)
                      .|.+++.. +.+..++|+......+|-++.|+.......+.-..            -.+.+...-|+++.- .|.+++++
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            34454443 34667788888888899888887665554443211            122333333555554 66777766


Q ss_pred             ccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecC---CCcEEEEEcCCCceeeeeccCCC------CCcceeeEEe
Q 026679           83 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPS------PNTNTEATFT  153 (235)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~------~~~i~~~~~~  153 (235)
                      ...               +.++.....+..+ +++.-.   ......+|+++++... ..++..      +..|+-+-+.
T Consensus       184 pke---------------GS~~~ay~~~gnK-V~sdyEt~gEsywit~D~~s~~yer-ve~P~kd~~sy~p~~I~~~~Y~  246 (313)
T d2hu7a1         184 SGE---------------GSFSSASISPGMK-VTAGLETAREARLVTVDPRDGSVED-LELPSKDFSSYRPTAITWLGYL  246 (313)
T ss_dssp             CSS---------------EEEEEEEECTTSC-EEEEEEESSCEEEEEECTTTCCEEE-CCCSSCHHHHHCCSEEEEEEEC
T ss_pred             CCC---------------CcccceeEccCce-eeeccCCCCceEEEEEecccCceee-eecCcccceeecceEEEeeeeC
Confidence            543               3455555555443 443322   2223356887765432 222221      2345556689


Q ss_pred             CCCcEEEEeCCCCcEEEEEcCCCceeeeecCC
Q 026679          154 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGN  185 (235)
Q Consensus       154 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  185 (235)
                      |++++++.+-.||.=++|.  +|+.+...++.
T Consensus       247 Pdd~L~iiakrdG~s~lF~--nGk~in~p~G~  276 (313)
T d2hu7a1         247 PDGRLAVVARREGRSAVFI--DGERVEAPQGN  276 (313)
T ss_dssp             TTSCEEEEEEETTEEEEEE--TTEEECCCSSE
T ss_pred             CCCcEEEEEecCCchheee--cceEecCCCCc
Confidence            9999999999999999997  67777665543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.98  E-value=0.36  Score=36.79  Aligned_cols=79  Identities=18%  Similarity=0.246  Sum_probs=48.2

Q ss_pred             CeEEEEeccCCCCCCceeEeecCCCcceeEEEEccCCCeEEEecCCCcEEEEEcCCCceeeeeccCCCCCcceeeEEeCC
Q 026679           76 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD  155 (235)
Q Consensus        76 g~v~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  155 (235)
                      |.+.-||+.+++.    .-... ...+...-..+-.+..+++++.|+.++.+|.++|+.+-++.+..... -.-+.|..+
T Consensus       457 G~l~AiD~~tGk~----~W~~~-~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~-~~P~ty~~~  530 (573)
T d1kb0a2         457 GRLLAWDPVAQKA----AWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV-AAPSTYMVD  530 (573)
T ss_dssp             EEEEEEETTTTEE----EEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEEET
T ss_pred             ccEEEeCCCCCce----Eeeec-CCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCcc-ccCEEEEEC
Confidence            4566777776553    11111 11111111233467788889999999999999999998887764321 122666677


Q ss_pred             Cc-EEE
Q 026679          156 GQ-YVV  160 (235)
Q Consensus       156 ~~-~l~  160 (235)
                      |+ |++
T Consensus       531 GkQYv~  536 (573)
T d1kb0a2         531 GRQYVS  536 (573)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            76 443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=88.49  E-value=2.4  Score=28.41  Aligned_cols=67  Identities=9%  Similarity=0.012  Sum_probs=33.2

Q ss_pred             cceeEEEeecCCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEecCCeEEEEeccC
Q 026679           15 ERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRS   85 (235)
Q Consensus        15 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~   85 (235)
                      ..|..++--  ..+.+... ||.|..|-....-.+..-......+..++......+. -.|+.+..|....
T Consensus        26 ~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~a-l~dg~v~~wG~~~   92 (273)
T d1jtdb_          26 SGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLA-LKDGEVIAWGGNE   92 (273)
T ss_dssp             SSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEE-EETTEEEEEECCT
T ss_pred             CCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceee-eeeeeeeccCCCc
Confidence            456666553  23444344 8999999765432222111111222233332333322 3588999997644

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=80.51  E-value=5.6  Score=25.94  Aligned_cols=111  Identities=10%  Similarity=-0.025  Sum_probs=56.8

Q ss_pred             CCCeeEEEeccceEEEEecCcceeeeeeeccCCceEEEcCCCCEEEEEe------cCCeEEEEeccCCCCCCceeEeecC
Q 026679           25 VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAM------EAGAIKLFDSRSYDKGPFDTFLVGG   98 (235)
Q Consensus        25 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~   98 (235)
                      +.++++.+...|.+.++-+..++.+...+.+-.....-.+.-..+...-      .-..+.+-++.....    ......
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GE----E~~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGE----EQRLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTC----EEECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCe----eeEecC
Confidence            3457888878999999988776655443322111122222222222221      123444445442221    222222


Q ss_pred             CCcceeEEEEcc-CCCeEEEecCCCcEEEEEcCCCceeeeecc
Q 026679           99 DTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSL  140 (235)
Q Consensus        99 ~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  140 (235)
                       ..+++-+...- +.+..++|+......+|-+..|+.......
T Consensus       101 -pk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~v  142 (313)
T d2hu7a1         101 -VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL  142 (313)
T ss_dssp             -SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred             -CceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccC
Confidence             23344333333 345566777788888998888876544433

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.26  E-value=6  Score=26.14  Aligned_cols=136  Identities=9%  Similarity=0.063  Sum_probs=61.1

Q ss_pred             eEEEEecCcceeeee--eeccCCceEEEcCCCCEEEEEec---------CCeEEEEeccCCCCCCceeEeecCCCcceeE
Q 026679           37 SVRIWDLRVNACQGI--LRLRGRPTVAFDQQGLVFAVAME---------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD  105 (235)
Q Consensus        37 ~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~v~~  105 (235)
                      .+.+||+.+++-...  +........+..-++++++.|+.         -..+.+||..+........  +......-.+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~--~p~~r~~~~~   97 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGV   97 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC--CSSCCBTCEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccccccccc--ccceecceec
Confidence            577999888653322  22211111222235667777653         2356777876543211100  0000111111


Q ss_pred             EEEccCCCeEEEecCCC-----cEEEEEcCCCceeeeeccCCCCCcceeeEEeCCCcEEEEeCCC-----CcEEEEEcCC
Q 026679          106 IKFSNDGKSMLLTTTNN-----NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNINT  175 (235)
Q Consensus       106 ~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~  175 (235)
                        ...+++.++.++.++     ....+|..+.............. -..+... ++..++.|+.+     ..+..||..+
T Consensus        98 --~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~  173 (288)
T d1zgka1          98 --GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRI-GVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPER  173 (288)
T ss_dssp             --EEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCB-SCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             --cccceeeEEecceecccccceeeeeccccCccccccccccccc-cceeeee-eecceEecCcccccccceEEEeeccc
Confidence              222555555554433     35557776655433222111111 1112222 45566666543     3478888766


Q ss_pred             Cce
Q 026679          176 RNE  178 (235)
Q Consensus       176 ~~~  178 (235)
                      .+.
T Consensus       174 ~~~  176 (288)
T d1zgka1         174 NEW  176 (288)
T ss_dssp             TEE
T ss_pred             ccc
Confidence            543