Citrus Sinensis ID: 026682

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANRLCKDCNCTNWTSKAFRSNIKKGG
cccccccccccccEEEEccccEEEEccHHHHHHHHHHHHcccEEEccccEEEEEcccccEEcccccccccEEEEccccHHHHHHHHcccccEEEEEEEEEEEEEEcccccEEEEcccccccccccEEEEcccccccHHHHHHccccccccccccHHHHHHHcccccccEEEEEEcccccccccccccEEEcccccEEEEEEccccccccccccEEEEcccHHHHHHHcccccccc
cccccccccccccEEEcccccEEEcccHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccEEcccccHHHHHHHHHccccEEEEEEEEEEEEEccccccEEEEcccccccccccEEEEEcccccccHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccEEcccccEEEEEEccccccccccccccccccHHHHHHHHHccccccc
msqrretsedgnemlfdhgapfftvtnNDVLALVREWESGGLVAEWKVnlgsfdrvSKKFVNIQQdgmnkkyvgvpgmnSICKAlchqpgveskfgvgvgrfewledknlwsvsgldgqslgqfngvvasdknvvsprfrdvtgrpppldltfapdlavkleeipvnpcFALMLAfseplssipvkgfsfqdsevlswahcdsskpgrsanrlckdcnctnwtskAFRSNIKKGG
msqrretsedgnemlfdhgapfFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGvvasdknvvsprfrdvtgrpppldLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSskpgrsanrlckdcnctnwtskafrsnikkgg
MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANRLCKDCNCTNWTSKAFRSNIKKGG
**************LFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCD********NRLCKDCNCTNWTSKA*********
*SQRR**SEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRV**********GMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANRLCKDCNCTNWTSKAFRS******
***********NEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAH*********ANRLCKDCNCTNWTSKAFRSNIKKGG
***********NEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSS*******RLC*DC******************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANRLCKDCNCTNWTSKAFRSNIKKGG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
224115286 372 predicted protein [Populus trichocarpa] 0.897 0.567 0.726 2e-88
147778135 369 hypothetical protein VITISV_000801 [Viti 0.897 0.571 0.691 1e-85
225462207 369 PREDICTED: uncharacterized protein LOC10 0.897 0.571 0.687 4e-85
356525815 369 PREDICTED: uncharacterized protein LOC10 0.897 0.571 0.668 2e-81
449460040 369 PREDICTED: uncharacterized protein LOC10 0.889 0.566 0.684 3e-81
449502153 369 PREDICTED: uncharacterized protein LOC10 0.889 0.566 0.684 3e-81
186491294 466 FAD/NAD(P)-binding oxidoreductase domain 0.897 0.452 0.658 1e-79
6056386 418 Hypothetical protein [Arabidopsis thalia 0.897 0.504 0.658 1e-79
6056384 396 Hypothetical protein [Arabidopsis thalia 0.897 0.532 0.658 2e-79
22330276 384 FAD/NAD(P)-binding oxidoreductase domain 0.897 0.549 0.658 2e-79
>gi|224115286|ref|XP_002332207.1| predicted protein [Populus trichocarpa] gi|222875314|gb|EEF12445.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/212 (72%), Positives = 185/212 (87%), Gaps = 1/212 (0%)

Query: 1   MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKF 60
           MSQRRE SEDG E+LFDHGAPFF+ +N+DVL LV EWES GLV EWK N GSFD +SKKF
Sbjct: 44  MSQRREISEDGKELLFDHGAPFFSASNSDVLRLVHEWESKGLVEEWKENCGSFDCISKKF 103

Query: 61  VNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS 120
           ++I+Q+  NKKYVG+PGMNSICKALC++ GVESKFGV +GR E L+D+  WS++GLDGQ+
Sbjct: 104 LDIEQEAPNKKYVGIPGMNSICKALCNETGVESKFGVSIGRLECLDDEK-WSLTGLDGQN 162

Query: 121 LGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPL 180
           LG+F+GVV SDK + SPRF DVTGRPPPLDL+  P+LA+KL++IPV+PCFALMLAFSEPL
Sbjct: 163 LGRFSGVVVSDKGIASPRFTDVTGRPPPLDLSLTPELALKLQDIPVSPCFALMLAFSEPL 222

Query: 181 SSIPVKGFSFQDSEVLSWAHCDSSKPGRSANR 212
           SSI VKGFSF++SE+LSW+HCDSSKPGRS  R
Sbjct: 223 SSISVKGFSFKNSEILSWSHCDSSKPGRSTAR 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147778135|emb|CAN76485.1| hypothetical protein VITISV_000801 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462207|ref|XP_002270560.1| PREDICTED: uncharacterized protein LOC100264528 [Vitis vinifera] gi|296082792|emb|CBI21797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356525815|ref|XP_003531517.1| PREDICTED: uncharacterized protein LOC100816696 [Glycine max] Back     alignment and taxonomy information
>gi|449460040|ref|XP_004147754.1| PREDICTED: uncharacterized protein LOC101216187 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449502153|ref|XP_004161558.1| PREDICTED: uncharacterized protein LOC101224633 [Cucumis sativus] Back     alignment and taxonomy information
>gi|186491294|ref|NP_175994.2| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gi|332195206|gb|AEE33327.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|6056386|gb|AAF02850.1|AC009894_21 Hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|6056384|gb|AAF02848.1|AC009894_19 Hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22330276|ref|NP_175996.2| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gi|17978976|gb|AAL47449.1| T6H22.19/T6H22.19 [Arabidopsis thaliana] gi|22655396|gb|AAM98290.1| At1g55980/T6H22.19 [Arabidopsis thaliana] gi|222423033|dbj|BAH19499.1| AT1G56000 [Arabidopsis thaliana] gi|332195208|gb|AEE33329.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
TAIR|locus:2012005466 AT1G55980 [Arabidopsis thalian 0.897 0.452 0.658 5e-76
TAIR|locus:2012030384 AT1G56000 [Arabidopsis thalian 0.897 0.549 0.658 5e-76
TAIR|locus:2084903 486 AT3G04650 [Arabidopsis thalian 0.753 0.364 0.282 1.2e-12
UNIPROTKB|Q4K6B1328 PFL_5143 "FAD dependent oxidor 0.527 0.378 0.297 0.00015
UNIPROTKB|Q48MT7328 PSPPH_1014 "Uncharacterized pr 0.514 0.368 0.282 0.0002
TAIR|locus:2012005 AT1G55980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 139/211 (65%), Positives = 171/211 (81%)

Query:     1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKF 60
             MSQRRE  EDG E++FDHGAPFF V+N+D +ALV EWES G V+EWK   GSFD  S KF
Sbjct:   197 MSQRREIGEDGKELMFDHGAPFFCVSNSDAMALVHEWESRGFVSEWKQVFGSFDCASNKF 256

Query:    61 VNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS 120
             + IQQ+G  KKYVGVPGMNSI KALC++ GV+S FG G+ + EWLE++  W ++   G++
Sbjct:   257 LGIQQEGDAKKYVGVPGMNSISKALCNESGVKSMFGTGIAKMEWLEEEIPWLLTDSKGEN 316

Query:   121 LGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPL 180
             LG+F+GVVASDKN+VSPRF  VTG PPPLDL+  P+LA KL+ IPV PCF+LMLAF EPL
Sbjct:   317 LGRFDGVVASDKNIVSPRFTQVTGLPPPLDLSLVPELATKLQNIPVLPCFSLMLAFKEPL 376

Query:   181 SSIPVKGFSFQDSEVLSWAHCDSSKPGRSAN 211
             SSIPVKG SF++SE+LSWAHC+S+KPGRS +
Sbjct:   377 SSIPVKGLSFKNSEILSWAHCESTKPGRSTD 407
GO:0005634 "nucleus" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2012030 AT1G56000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K6B1 PFL_5143 "FAD dependent oxidoreductase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|Q48MT7 PSPPH_1014 "Uncharacterized protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
COG3380331 COG3380, COG3380, Predicted NAD/FAD-dependent oxid 6e-19
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] Back     alignment and domain information 
 Score = 83.7 bits (207), Expect = 6e-19
 Identities = 49/194 (25%), Positives = 71/194 (36%), Gaps = 17/194 (8%)

Query: 16  FDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGV 75
           FDHGA +F   +   L  V      GLV  W   + +F             G    YVG 
Sbjct: 50  FDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTF-----TGDGSPPRGDEDPYVGE 104

Query: 76  PGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVV 135
           PGM+++ K L     V       V         N W++   DG    QF+ V      V+
Sbjct: 105 PGMSALAKFLATDLTV--VLETRVTEVAR--TDNDWTLHTDDGTRHTQFDDV------VL 154

Query: 136 SPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEV 195
           +                    L   L ++   PC++ +L + +PL   P  G +F D   
Sbjct: 155 AIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPL-DRPWPG-NFVDGHP 212

Query: 196 LSWAHCDSSKPGRS 209
           L+W   D+SK G  
Sbjct: 213 LAWLARDASKKGHV 226

Length = 331

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 235
COG3380331 Predicted NAD/FAD-dependent oxidoreductase [Genera 100.0
TIGR00562462 proto_IX_ox protoporphyrinogen oxidase. This prote 99.45
PLN02576496 protoporphyrinogen oxidase 99.38
PRK11883451 protoporphyrinogen oxidase; Reviewed 99.25
PRK12416463 protoporphyrinogen oxidase; Provisional 99.15
TIGR03467419 HpnE squalene-associated FAD-dependent desaturase. 99.01
COG1232444 HemY Protoporphyrinogen oxidase [Coenzyme metaboli 98.94
COG1231450 Monoamine oxidase [Amino acid transport and metabo 98.88
PLN02328 808 lysine-specific histone demethylase 1 homolog 98.88
PLN02529 738 lysine-specific histone demethylase 1 98.82
PLN02268435 probable polyamine oxidase 98.82
PF01593450 Amino_oxidase: Flavin containing amine oxidoreduct 98.65
PLN03000 881 amine oxidase 98.62
PRK07233434 hypothetical protein; Provisional 98.54
PLN02568 539 polyamine oxidase 98.47
PLN02976 1713 amine oxidase 98.41
PLN02676 487 polyamine oxidase 98.36
COG2907447 Predicted NAD/FAD-binding protein [General functio 98.28
PRK07208 479 hypothetical protein; Provisional 98.13
TIGR02733 492 desat_CrtD C-3',4' desaturase CrtD. Members of thi 98.08
KOG1276491 consensus Protoporphyrinogen oxidase [Coenzyme tra 98.07
PLN02612 567 phytoene desaturase 98.06
TIGR02731453 phytoene_desat phytoene desaturase. Plants and cya 98.0
TIGR02732474 zeta_caro_desat carotene 7,8-desaturase. Carotene 97.91
TIGR02734 502 crtI_fam phytoene desaturase. Phytoene is converte 97.34
PLN02487 569 zeta-carotene desaturase 97.14
TIGR02730 493 carot_isom carotene isomerase. Members of this fam 96.72
KOG0685 498 consensus Flavin-containing amine oxidase [Coenzym 96.59
PF13738203 Pyr_redox_3: Pyridine nucleotide-disulphide oxidor 96.25
PF07156368 Prenylcys_lyase: Prenylcysteine lyase; InterPro: I 96.12
KOG0029 501 consensus Amine oxidase [Secondary metabolites bio 95.81
COG1233 487 Phytoene dehydrogenase and related proteins [Secon 94.64
PTZ00363443 rab-GDP dissociation inhibitor; Provisional 93.85
COG2081 408 Predicted flavoproteins [General function predicti 92.94
PF01266358 DAO: FAD dependent oxidoreductase; InterPro: IPR00 92.75
PF13454156 NAD_binding_9: FAD-NAD(P)-binding 92.51
PLN02172 461 flavin-containing monooxygenase FMO GS-OX 91.6
PF03486 409 HI0933_like: HI0933-like protein; InterPro: IPR004 90.91
PRK13339 497 malate:quinone oxidoreductase; Reviewed 90.85
TIGR03197381 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri 90.68
TIGR03219 414 salicylate_mono salicylate 1-monooxygenase. Member 90.41
PF00743 531 FMO-like: Flavin-binding monooxygenase-like; Inter 89.61
COG0579 429 Predicted dehydrogenase [General function predicti 89.57
PRK11728393 hydroxyglutarate oxidase; Provisional 89.11
TIGR02352337 thiamin_ThiO glycine oxidase ThiO. This family con 89.03
PRK07236 386 hypothetical protein; Provisional 88.74
TIGR03862 376 flavo_PP4765 uncharacterized flavoprotein, PP_4765 86.58
PRK09126 392 hypothetical protein; Provisional 86.28
PRK05732 395 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 85.85
TIGR01984 382 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T 85.63
PRK05714 405 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 85.6
PRK06847 375 hypothetical protein; Provisional 85.29
TIGR03329 460 Phn_aa_oxid putative aminophosphonate oxidoreducta 84.89
PRK01747662 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans 84.88
PRK11259376 solA N-methyltryptophan oxidase; Provisional 84.55
PRK06753 373 hypothetical protein; Provisional 84.48
PRK08849 384 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 83.68
PRK07588 391 hypothetical protein; Provisional 83.52
TIGR01377380 soxA_mon sarcosine oxidase, monomeric form. Sarcos 83.23
PTZ00383 497 malate:quinone oxidoreductase; Provisional 82.82
PRK08020 391 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin 82.53
PF0007080 Pyr_redox: Pyridine nucleotide-disulphide oxidored 81.9
PRK09897 534 hypothetical protein; Provisional 81.49
PRK08850 405 2-octaprenyl-6-methoxyphenol hydroxylase; Validate 81.39
PRK07333 403 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 81.21
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=9.3e-48  Score=321.90  Aligned_cols=209  Identities=25%  Similarity=0.454  Sum_probs=179.8

Q ss_pred             CcceecccCCCCceecccCCCceecCChHHHHHHHHHHhCCccccccccceeEeccCcceeecccCCCCceEEeCCCchH
Q 026682            1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNS   80 (235)
Q Consensus         1 maTRr~~~~~~~~~~fDhGAqyft~~~~~f~~~v~~~~~~g~v~~W~~~~~~~~~~~g~~~~~~~~~~~~~yvg~~GM~~   80 (235)
                      |+|||.  +.+   .||||||||+++++.|.++|+.|.++|+|++|.+.++.+.+.+..     +...+..|++.|||++
T Consensus        40 lAtRRl--~~g---~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~~~~~~~~~~~~-----~~~d~~pyvg~pgmsa  109 (331)
T COG3380          40 LATRRL--DGG---RFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTFTGDGSP-----PRGDEDPYVGEPGMSA  109 (331)
T ss_pred             hheecc--CCc---cccccceeecCCchHHHHHHHHHHhCCceeeccccccccccCCCC-----CCCCCCccccCcchHH
Confidence            799998  555   599999999999999999999999999999999988988753311     2222333999999999


Q ss_pred             HHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhcccCCCCCCCCCcchHHHHH
Q 026682           81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVK  160 (235)
Q Consensus        81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~~~~~~~~l~~~  160 (235)
                      |+|+|++++.  |+++++|+.|.+  .++.|+|++++|..+..||.||||   +|+||++.||. +.  +..+..++.+.
T Consensus       110 lak~LAtdL~--V~~~~rVt~v~~--~~~~W~l~~~~g~~~~~~d~vvla---~PAPQ~~~LLt-~~--~~~~p~~l~~~  179 (331)
T COG3380         110 LAKFLATDLT--VVLETRVTEVAR--TDNDWTLHTDDGTRHTQFDDVVLA---IPAPQTATLLT-TD--ADDLPAALRAA  179 (331)
T ss_pred             HHHHHhccch--hhhhhhhhhhee--cCCeeEEEecCCCcccccceEEEe---cCCCcchhhcC-cc--cccchHHHHHh
Confidence            9999999774  899999999998  788999999888777799999999   99999999994 21  22344578999


Q ss_pred             hcCCCCcceEEEEEeccCCCCCCCccceEecCCCcEEEEEeCCCCCCCCCCCceEEEEcC-hhhhHHHhhhc
Q 026682          161 LEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANRLCKDCNCT-NWTSKAFRSNI  231 (235)
Q Consensus       161 l~~v~~~p~~~v~~~~~~~~~~~~~~g~~~~~~~~l~wi~~~ssKpgR~~~~~~wvl~a~-~~~~~~~~~~~  231 (235)
                      +..|.|.|||++|++|++++. .|++|.++ ++++|+|+++|.+||||.+.++.||+|++ +||+.|++..-
T Consensus       180 ~a~V~y~Pc~s~~lg~~q~l~-~P~~G~~v-dg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~  249 (331)
T COG3380         180 LADVVYAPCWSAVLGYPQPLD-RPWPGNFV-DGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPA  249 (331)
T ss_pred             hccceehhHHHHHhcCCccCC-CCCCCccc-CCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcCCH
Confidence            999999999999999999986 68999666 55699999999999999998899999965 99999998643

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase Back     alignment and domain information
>PLN02576 protoporphyrinogen oxidase Back     alignment and domain information
>PRK11883 protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>PRK12416 protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase Back     alignment and domain information
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] Back     alignment and domain information
>COG1231 Monoamine oxidase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02328 lysine-specific histone demethylase 1 homolog Back     alignment and domain information
>PLN02529 lysine-specific histone demethylase 1 Back     alignment and domain information
>PLN02268 probable polyamine oxidase Back     alignment and domain information
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) Back     alignment and domain information
>PLN03000 amine oxidase Back     alignment and domain information
>PRK07233 hypothetical protein; Provisional Back     alignment and domain information
>PLN02568 polyamine oxidase Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>PLN02676 polyamine oxidase Back     alignment and domain information
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only] Back     alignment and domain information
>PRK07208 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD Back     alignment and domain information
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>PLN02612 phytoene desaturase Back     alignment and domain information
>TIGR02731 phytoene_desat phytoene desaturase Back     alignment and domain information
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase Back     alignment and domain information
>TIGR02734 crtI_fam phytoene desaturase Back     alignment and domain information
>PLN02487 zeta-carotene desaturase Back     alignment and domain information
>TIGR02730 carot_isom carotene isomerase Back     alignment and domain information
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A Back     alignment and domain information
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1 Back     alignment and domain information
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PTZ00363 rab-GDP dissociation inhibitor; Provisional Back     alignment and domain information
>COG2081 Predicted flavoproteins [General function prediction only] Back     alignment and domain information
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 Back     alignment and domain information
>PF13454 NAD_binding_9: FAD-NAD(P)-binding Back     alignment and domain information
>PLN02172 flavin-containing monooxygenase FMO GS-OX Back     alignment and domain information
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases Back     alignment and domain information
>PRK13339 malate:quinone oxidoreductase; Reviewed Back     alignment and domain information
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain Back     alignment and domain information
>TIGR03219 salicylate_mono salicylate 1-monooxygenase Back     alignment and domain information
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] Back     alignment and domain information
>COG0579 Predicted dehydrogenase [General function prediction only] Back     alignment and domain information
>PRK11728 hydroxyglutarate oxidase; Provisional Back     alignment and domain information
>TIGR02352 thiamin_ThiO glycine oxidase ThiO Back     alignment and domain information
>PRK07236 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family Back     alignment and domain information
>PRK09126 hypothetical protein; Provisional Back     alignment and domain information
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase Back     alignment and domain information
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PRK06847 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase Back     alignment and domain information
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed Back     alignment and domain information
>PRK11259 solA N-methyltryptophan oxidase; Provisional Back     alignment and domain information
>PRK06753 hypothetical protein; Provisional Back     alignment and domain information
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PRK07588 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form Back     alignment and domain information
>PTZ00383 malate:quinone oxidoreductase; Provisional Back     alignment and domain information
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed Back     alignment and domain information
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] Back     alignment and domain information
>PRK09897 hypothetical protein; Provisional Back     alignment and domain information
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated Back     alignment and domain information
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
3kkj_A336 X-Ray Structure Of P. Syringae Q888a4 Oxidoreductas 6e-09
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At Resolution 2.5a, Northeast Structural Genomics Consortium Target Psr10 Length = 336 Back     alignment and structure 
Iteration: 1

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 25/195 (12%)
Query: 16  FDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFD--RVSKKFVNIQQDGMNKKYV 73
            D GA +FT  +      V++W++ G VAEW   L +F   R+S             ++V
Sbjct: 51  LDXGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPS------PDEQVRWV 104
Query: 74  GVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKN 133
           G PG ++I +A      V     +     E    +  W++   +GQ+ G F+ V+     
Sbjct: 105 GKPGXSAITRAXRGDXPVSFSCRIT----EVFRGEEHWNLLDAEGQNHGPFSHVI----- 155
Query: 134 VVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDS 193
           + +P  +  T       L  AP LA  +  +  +P +A+ LAF  PL + P +G   QDS
Sbjct: 156 IATPAPQAST------LLAAAPKLASVVAGVKXDPTWAVALAFETPLQT-PXQGCFVQDS 208
Query: 194 EVLSWAHCDSSKPGR 208
             L W   + SKP R
Sbjct: 209 P-LDWLARNRSKPER 222

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 3e-11
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 2e-07
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 99.95
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 99.87
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 99.35
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 99.12
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 99.07
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 99.06
1s3e_A 520 Amine oxidase [flavin-containing] B; human monoami 99.05
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 98.94
4dsg_A 484 UDP-galactopyranose mutase; rossmann fold, flavin 98.91
2jae_A 489 L-amino acid oxidase; oxidoreductase, dimerisation 98.89
2vvm_A495 Monoamine oxidase N; FAD, peroxisome, flavoprotein 98.81
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 98.74
2iid_A 498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 98.74
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 98.72
2z3y_A 662 Lysine-specific histone demethylase 1; chromatin, 98.53
1sez_A 504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 98.51
1b37_A 472 Protein (polyamine oxidase); flavin-dependent amin 98.51
2xag_A 852 Lysine-specific histone demethylase 1; amine oxida 98.47
1rsg_A 516 FMS1 protein; FAD binding motif, oxidoreductase; H 98.32
4gut_A776 Lysine-specific histone demethylase 1B; histone de 98.26
3k7m_X431 6-hydroxy-L-nicotine oxidase; enantiomeric substra 98.21
2b9w_A424 Putative aminooxidase; isomerase, conjugated linol 98.12
4dgk_A 501 Phytoene dehydrogenase; the FAD/NAD(P)-binding ros 98.07
4gde_A 513 UDP-galactopyranose mutase; flavin adenine dinucle 97.98
3ayj_A 721 Pro-enzyme of L-phenylalanine oxidase; amino acid 97.58
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 96.92
1v0j_A399 UDP-galactopyranose mutase; flavoprotein, isomeras 96.56
2bi7_A384 UDP-galactopyranose mutase; FAD, flavoprotein, iso 96.45
1i8t_A367 UDP-galactopyranose mutase; rossman fold, FAD, con 96.29
1d5t_A433 Guanine nucleotide dissociation inhibitor; ultra-h 94.77
3nyc_A381 D-arginine dehydrogenase; FAD, imino-arginine, oxi 93.74
2e1m_A376 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 93.69
3p1w_A475 Rabgdi protein; GDI RAB, malaria, structural genom 93.45
2bcg_G453 Secretory pathway GDP dissociation inhibitor; RABG 93.41
3pvc_A 689 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 93.37
3ps9_A 676 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 92.99
4a9w_A 357 Monooxygenase; baeyer-villiger, FAD, oxidoreductas 91.46
2uzz_A372 N-methyl-L-tryptophan oxidase; N-methyltryptophan 91.4
3dme_A369 Conserved exported protein; structural genomics, P 91.31
3dje_A 438 Fructosyl amine: oxygen oxidoreductase; fructosyl- 91.23
1vg0_A 650 RAB proteins geranylgeranyltransferase component A 91.15
2e1m_B130 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 91.09
3gwf_A 540 Cyclohexanone monooxygenase; flavoprotein biocatal 91.08
1ryi_A382 Glycine oxidase; flavoprotein, protein-inhibitor c 90.55
3hdq_A397 UDP-galactopyranose mutase; substrate and inhibito 90.38
4hb9_A 412 Similarities with probable monooxygenase; flavin, 90.31
2vou_A 397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 90.3
3d1c_A 369 Flavin-containing putative monooxygenase; NP_37310 90.12
2xdo_A 398 TETX2 protein; tetracycline degradation, tigecycli 89.98
2oln_A397 NIKD protein; flavoprotein, rossmann fold, oxidore 89.58
2gf3_A389 MSOX, monomeric sarcosine oxidase; flavoprotein ox 89.47
2gv8_A 447 Monooxygenase; FMO, FAD, NADPH, cofactor complex, 89.23
4ap3_A 549 Steroid monooxygenase; oxidoreductase, baeyer-vill 88.85
3v76_A 417 Flavoprotein; structural genomics, PSI-biology, NE 88.76
1y56_B382 Sarcosine oxidase; dehydrogenase, protein-protein 88.7
2x3n_A 399 Probable FAD-dependent monooxygenase; oxidoreducta 88.63
3uox_A 545 Otemo; baeyer-villiger monooxygenase, oxidoreducta 88.58
2ywl_A180 Thioredoxin reductase related protein; uncharacter 87.68
2i0z_A 447 NAD(FAD)-utilizing dehydrogenases; structural geno 86.72
3lzw_A 332 Ferredoxin--NADP reductase 2; ferredoxin reductase 86.32
1w4x_A 542 Phenylacetone monooxygenase; baeyer-villiger, FAD; 85.61
2gqf_A 401 Hypothetical protein HI0933; structural genomics, 84.96
1xdi_A 499 RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun 84.7
3rp8_A 407 Flavoprotein monooxygenase; FAD-binding protein, o 84.54
2v3a_A384 Rubredoxin reductase; alkane degradation, NADH oxi 84.34
2zbw_A 335 Thioredoxin reductase; redox protein, oxidoreducta 83.83
2gag_B405 Heterotetrameric sarcosine oxidase beta-subunit; f 83.64
3s5w_A 463 L-ornithine 5-monooxygenase; class B flavin depend 83.51
3o0h_A484 Glutathione reductase; ssgcid, structur genomics, 82.37
3iwa_A 472 FAD-dependent pyridine nucleotide-disulphide oxido 81.94
3nlc_A 549 Uncharacterized protein VP0956; FAD-binding protei 81.56
3lxd_A415 FAD-dependent pyridine nucleotide-disulphide oxido 81.03
1fl2_A310 Alkyl hydroperoxide reductase subunit F; reactive 80.67
3ef6_A410 Toluene 1,2-dioxygenase system ferredoxin--NAD(+) 80.32
3ab1_A 360 Ferredoxin--NADP reductase; oxidoreductase, electr 80.16
3f8d_A323 Thioredoxin reductase (TRXB-3); redox protein, nuc 80.1
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Back     alignment and structure
Probab=99.95  E-value=1.6e-27  Score=209.14  Aligned_cols=208  Identities=17%  Similarity=0.226  Sum_probs=165.6

Q ss_pred             CcceecccCCCCceecccCCCceecCCh---HHHHHHHHHHhCCccccccccceeEeccCcceeecccCCCCceEEeCCC
Q 026682            1 MSQRRETSEDGNEMLFDHGAPFFTVTNN---DVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPG   77 (235)
Q Consensus         1 maTRr~~~~~~~~~~fDhGAqyft~~~~---~f~~~v~~~~~~g~v~~W~~~~~~~~~~~g~~~~~~~~~~~~~yvg~~G   77 (235)
                      |+|++.  +.+....+|||++||+++++   .|.++++.|...|.+.+|........          ......+|+..+|
T Consensus        43 ~~~~~~--~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~g  110 (342)
T 3qj4_A           43 MTTACS--PHNPQCTADLGAQYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMV----------MKEGDCNFVAPQG  110 (342)
T ss_dssp             GCEEEC--SSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHHTTSCEECCSCEETCC----------C--CCEEEECTTC
T ss_pred             eeeeec--CCCCCceEecCCceEEcCchHHHHHHHHHHHHHhCCCeecCchhhccee----------ccCCccceecCCC
Confidence            355665  33344679999999999877   88899999999999999986432111          1234678999999


Q ss_pred             chHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCCCcccccccEEEecCCCCCccchhcccCCCCCCCCCcchHH
Q 026682           78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDL  157 (235)
Q Consensus        78 M~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~~~~~~~~l  157 (235)
                      |+.++++|++.++.+|+++++|++|++  ++++|+|.+++|+.+ .||.||+|   +|+++++.||....|   .+.++.
T Consensus       111 ~~~l~~~l~~~~g~~i~~~~~V~~i~~--~~~~~~v~~~~g~~~-~ad~vV~A---~p~~~~~~ll~~~~~---~l~~~~  181 (342)
T 3qj4_A          111 ISSIIKHYLKESGAEVYFRHRVTQINL--RDDKWEVSKQTGSPE-QFDLIVLT---MPVPEILQLQGDITT---LISECQ  181 (342)
T ss_dssp             TTHHHHHHHHHHTCEEESSCCEEEEEE--CSSSEEEEESSSCCE-EESEEEEC---SCHHHHTTCBSTHHH---HSCHHH
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEE--cCCEEEEEECCCCEE-EcCEEEEC---CCHHHHHHHhccccc---ccCHHH
Confidence            999999999977889999999999997  788999999888643 79999999   999999999851000   123356


Q ss_pred             HHHhcCCCCcceEEEEEeccCCCCC-CCccceEecCCCcEEEEEeCCCCCCCCC--CCceEEEEcC-hhhhHHHhh
Q 026682          158 AVKLEEIPVNPCFALMLAFSEPLSS-IPVKGFSFQDSEVLSWAHCDSSKPGRSA--NRLCKDCNCT-NWTSKAFRS  229 (235)
Q Consensus       158 ~~~l~~v~~~p~~~v~~~~~~~~~~-~~~~g~~~~~~~~l~wi~~~ssKpgR~~--~~~~wvl~a~-~~~~~~~~~  229 (235)
                      .+.+++++|.||++|++.|+++.+. .+++|++++++++++|++++|+||||..  .+.+||+|++ +|+.++++.
T Consensus       182 ~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~~~  257 (342)
T 3qj4_A          182 RQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEH  257 (342)
T ss_dssp             HHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTTTS
T ss_pred             HHHHhcCCccccEEEEEEECCCCccCCceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhhcC
Confidence            8899999999999999999986332 5789998887767999999999999862  3468999987 899887764
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Back     alignment and structure
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Back     alignment and structure
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Back     alignment and structure
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Back     alignment and structure
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Back     alignment and structure
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Back     alignment and structure
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Back     alignment and structure
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Back     alignment and structure
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Back     alignment and structure
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} Back     alignment and structure
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Back     alignment and structure
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Back     alignment and structure
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Back     alignment and structure
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Back     alignment and structure
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Back     alignment and structure
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Back     alignment and structure
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Back     alignment and structure
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Back     alignment and structure
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Back     alignment and structure
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Back     alignment and structure
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Back     alignment and structure
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Back     alignment and structure
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Back     alignment and structure
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Back     alignment and structure
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Back     alignment and structure
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Back     alignment and structure
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Back     alignment and structure
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Back     alignment and structure
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Back     alignment and structure
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Back     alignment and structure
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Back     alignment and structure
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Back     alignment and structure
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Back     alignment and structure
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Back     alignment and structure
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Back     alignment and structure
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Back     alignment and structure
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Back     alignment and structure
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Back     alignment and structure
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Back     alignment and structure
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Back     alignment and structure
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Back     alignment and structure
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Back     alignment and structure
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Back     alignment and structure
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Back     alignment and structure
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Back     alignment and structure
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Back     alignment and structure
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Back     alignment and structure
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Back     alignment and structure
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Back     alignment and structure
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Back     alignment and structure
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Back     alignment and structure
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Back     alignment and structure
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* Back     alignment and structure
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Back     alignment and structure
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 98.48
d2v5za1383 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 97.79
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 97.59
d2bcgg1297 Guanine nucleotide dissociation inhibitor, GDI {Ba 96.6
d1onfa2117 Glutathione reductase {Plasmodium falciparum [TaxI 95.82
d1d5ta1336 Guanine nucleotide dissociation inhibitor, GDI {Co 95.67
d1aoga2117 Trypanothione reductase {Trypanosoma cruzi [TaxId: 95.5
d1seza1373 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 95.5
d2gf3a1281 Sarcosine oxidase {Bacillus sp., strain b0618 [Tax 95.45
d2gv8a1335 Flavin-dependent monoxygenase SPBP16F5.08c {Schizo 95.32
d1ryia1276 Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} 95.13
d1m6ia2137 Apoptosis-inducing factor (AIF) {Human (Homo sapie 94.98
d1w4xa1298 Phenylacetone monooxygenase {Thermobifida fusca [T 94.75
d1pj5a2305 N,N-dimethylglycine oxidase {Arthrobacter globifor 94.13
d1gesa2116 Glutathione reductase {Escherichia coli [TaxId: 56 93.93
d1feca2117 Trypanothione reductase {Crithidia fasciculata [Ta 93.05
d2i0za1251 Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] 93.03
d3lada2119 Dihydrolipoamide dehydrogenase {Azotobacter vinela 92.9
d2ivda2108 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 92.29
d1q1ra2133 Putidaredoxin reductase {Pseudomonas putida [TaxId 91.16
d1v59a2122 Dihydrolipoamide dehydrogenase {Baker's yeast (Sac 91.07
d1ebda2117 Dihydrolipoamide dehydrogenase {Bacillus stearothe 90.83
d1nhpa2123 NADH peroxidase {Enterococcus faecalis [TaxId: 135 89.95
d1d7ya2121 NADH-dependent ferredoxin reductase, BphA4 {Pseudo 89.45
d2gqfa1253 Hypothetical protein HI0933 {Haemophilus influenza 88.76
d1dxla2123 Dihydrolipoamide dehydrogenase {Garden pea (Pisum 88.28
d1seza2112 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 88.13
d3grsa2125 Glutathione reductase {Human (Homo sapiens) [TaxId 85.49
d1ojta2125 Dihydrolipoamide dehydrogenase {Neisseria meningit 84.56
d1lvla2115 Dihydrolipoamide dehydrogenase {Pseudomonas putida 84.5
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 83.01
d1mo9a2121 NADH-dependent 2-ketopropyl coenzyme M oxidoreduct 82.57
d1m6ia1213 Apoptosis-inducing factor (AIF) {Human (Homo sapie 81.53
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.48  E-value=8.3e-08  Score=77.57  Aligned_cols=92  Identities=14%  Similarity=0.092  Sum_probs=72.1

Q ss_pred             CceEEeCCCchHHHHHHhcCCCCeeEcCeeEEEEEeecCCCCeEEEeCC-Cc-ccccccEEEecCCCCCccchhcccCCC
Q 026682           69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQ-SLGQFNGVVASDKNVVSPRFRDVTGRP  146 (235)
Q Consensus        69 ~~~yvg~~GM~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~-G~-~~~~~d~VVlA~~~~pap~~~~ll~~p  146 (235)
                      ...+...+||..+.+.|++.++.+|+++++|++|+.  ++++|++...+ |+ ....||.||+|   +|++.+++||.  
T Consensus       212 ~~~~~~~~g~~~~~~~l~~~~g~~i~~~~~V~~I~~--~~~~~~v~~~~~~~~~~~~ad~VV~a---~p~~~~~~Ll~--  284 (347)
T d2ivda1         212 GALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAR--EDGGWRLIIEEHGRRAELSVAQVVLA---APAHATAKLLR--  284 (347)
T ss_dssp             CCEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEEC--C--CCEEEEEETTEEEEEECSEEEEC---SCHHHHHHHHT--
T ss_pred             CcccccCCchHHHHHHHHHHhhcccccCCEEEEEEE--eCCeEEEEEEcCCeEEEEECCEEEEC---CCHHHHHHhcc--
Confidence            345677899999999999988889999999999987  77889887653 32 23479999999   99999999986  


Q ss_pred             CCCCCCcchHHHHHhcCCCCcceEEE
Q 026682          147 PPLDLTFAPDLAVKLEEIPVNPCFAL  172 (235)
Q Consensus       147 ~~~~~~~~~~l~~~l~~v~~~p~~~v  172 (235)
                           ++.+++...+..+.+.+....
T Consensus       285 -----~~~~~~~~~~~~~~~~~~~~~  305 (347)
T d2ivda1         285 -----PLDDALAALVAGIYNLGHLER  305 (347)
T ss_dssp             -----TTCHHHHHHHHTCCBTTHHHH
T ss_pred             -----CCCHHHHHHhhcceecCcccc
Confidence                 567788888888866654333
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Back     information, alignment and structure
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Back     information, alignment and structure
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Back     information, alignment and structure
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Back     information, alignment and structure
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure