Citrus Sinensis ID: 026701

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEcccccEEcccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHccccccEEEEEEEEEEEccEEEEEEEEEEEcccccEEEEEEEEEEccEEEEEEEEEcHHHHHHHHHHHHHHHcccEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccccccEEEEcccccccccHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHccccccEEEcccccEEEEcccccEEEEccccEEEEEcccccccEEEEEEEccccccHHHcccHHHHHHHHHHHHHccccccEEEEEEcEEcccccEEEEEEEEEEccccccEEEEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHHHccEEEEc
Coil and Loop (DISEMBL)
MAVSSLSLNWVSTTLSKklnvaypneltrsatafscqnfftcpedissdeeNKSKRRLLLMGAGLltanllpanslfaqeipknydafvdridgysyvypsdwtefeftghdsgfkDRYLQLQNVRVrfiptdkkdvhdlgpmEEVVSNLARHvyaapnqvadILDMqeksvdgknyytfeyiltspnyssasIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI
Flexible Loop (DISEMBL)
mavsslslnwVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIptdkkdvhdlGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVganerrwkrvrnklkvvadsfrildi
Low Complexity Region (SEG)
MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYssasiatiaiaNGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI
Disordered region (IsUnstruct)
*******LNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPE************RLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRIL**
Disordered Region (DISOPRED)
***********************************************************LMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVA********SVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI
Disordered Region (DISEMBL)
MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI
Disordered Region (DISPRO)
*AVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNF************NKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
O80634	238	PsbP-like protein 2, chlo	yes	no	1.0	0.987	0.571	3e-73
P82538	230	PsbP-like protein 1, chlo	no	no	0.774	0.791	0.380	8e-34
O49080	264	Oxygen-evolving enhancer	N/A	no	0.812	0.723	0.256	2e-10
Q42029	263	Oxygen-evolving enhancer	no	no	0.812	0.726	0.260	2e-10
Q9SLQ8	263	Oxygen-evolving enhancer	N/A	no	0.748	0.669	0.291	2e-10
Q04127	266	Oxygen-evolving enhancer	N/A	no	0.753	0.665	0.259	3e-10
P93566	260	Oxygen-evolving enhancer	N/A	no	0.804	0.726	0.25	5e-10
P11594	260	Oxygen-evolving enhancer	N/A	no	0.821	0.742	0.248	5e-10
Q40407	265	Oxygen-evolving enhancer	N/A	no	0.740	0.656	0.268	1e-09
P18212	265	Oxygen-evolving enhancer	N/A	no	0.753	0.667	0.254	2e-09

>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2 PE=1 SV=2

 Score =  274 bits (701), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 136/238 (57%), Positives = 166/238 (69%), Gaps = 3/238 (1%)

Query: 1   MAVSSLSL--NWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDI-SSDEENKSKRR 57
           MAVSSLS+     S T+S K  +  PN   ++    S        E        N  KRR
Sbjct: 1   MAVSSLSIRCGGFSPTISHKTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRR 60

Query: 58  LLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKD 117
             L+G G L A  +PA  L A+EIPK+Y  FVDR DGYSY YPSDW EF+F  HDS FKD
Sbjct: 61  QALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKD 120

Query: 118 RYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNY 177
           RYLQLQNVRVRFIPT+K D+H++GPMEEVV +L +H +AAPNQVA I DM+E+  DGKNY
Sbjct: 121 RYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNY 180

Query: 178 YTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
           YTFEY L +P Y++ S AT+A+ N RYYTLIVGANERRW++V+ +L+VVADS +IL I
Sbjct: 181 YTFEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

Required for accumulation of the chloroplast NAD(P)H dehydrogenase (NDH) complex. May be a subunit of this complex.
Arabidopsis thaliana (taxid: 3702)

>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1

 Score =  144 bits (362), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 108/184 (58%), Gaps = 2/184 (1%)

Query: 51  ENKSKRRLLL-MGAGLLTANLLPANSL-FAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEF 108
           ++K +RRL++  G      +LL    L FA E  K + A  D  D Y+++YP  W E   
Sbjct: 45  QDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVI 104

Query: 109 TGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQ 168
            G D  +KD    L++V V  +PT K+ + + GP +++   L + V A PNQ   ++D  
Sbjct: 105 EGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLIDAS 164

Query: 169 EKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVAD 228
           E  VDGK YY FE+ + + NY+  ++ TI + NG +YTL  GANERRW++++++L  V D
Sbjct: 165 EHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVD 224

Query: 229 SFRI 232
           SF+I
Sbjct: 225 SFKI 228

Required for efficient repair of photodamaged PSII, but not tightly associated with the complex.

Arabidopsis thaliana (taxid: 3702)

>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 35/226 (15%)

Query: 42  CPEDISSD-EENKS---KRRL---LLMGAGLLTANLLPANSLFAQ------EIPKNYDAF 88
           C    SSD +EN S    RRL   +L+G+  +   + PAN+ + +      +   N D  
Sbjct: 38  CRAQKSSDTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFL 97

Query: 89  VDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEE 145
               DG++ + P+ W    E EF G    ++D +    NV V   PT KK + D G  EE
Sbjct: 98  PYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEE 157

Query: 146 VVSN----LARHVYAA---------PNQV--ADILDMQEKSVDGKNYYTFEYILTSPNYS 190
            +S     L +  Y+          P+ V  A+IL++    V GK YY    +  + +  
Sbjct: 158 FLSTVDYLLGKQAYSGKTASEGGFDPDSVATANILEVSTPVVGGKQYYNISVLTRTADGD 217

Query: 191 SAS---IATIAIANGRYYTLIVGANERRW-KRVRNKLKVVADSFRI 232
                 + +  + +G+ Y     A ++RW K  +  ++    SF +
Sbjct: 218 EGGKHHVISATVTDGKLYICKAQAGDKRWFKGAKKFVESTTTSFNV 263

May be involved in the regulation of photosystem II.

Fritillaria agrestis (taxid: 64177)

>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 32/223 (14%)

Query: 42  CPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDR 91
           C    S +++N +  RRL   LL+GA  + + + PA++ + +       PK N D     
Sbjct: 40  CKAQQSHEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYN 99

Query: 92  IDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVS 148
            DG+    P+ W    E E+ G    F+D +    N+ V   PTDKK + D G  EE +S
Sbjct: 100 GDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLS 159

Query: 149 N----LARHVYAAPN-----------QVADILDMQEKSVDGKNYYTFEYILTSPNYSSAS 193
                L +  Y                 A+IL+   + V GK YY    +  + +     
Sbjct: 160 QVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGG 219

Query: 194 ---IATIAIANGRYYTLIVGANERRW-KRVRNKLKVVADSFRI 232
              + T  +  G+ Y     A ++RW K  R  ++  A SF +
Sbjct: 220 KHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSV 262

May be involved in the regulation of photosystem II.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 33/209 (15%)

Query: 56  RRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDGYSYVYPSDWT-- 104
           RRL   +L+GA  L + + PA++ + +       PK N D      DG+    PS W   
Sbjct: 55  RRLALTVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPS 114

Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LARHVYAA-- 157
            E EF G    ++D +    N+ V   PTDKK + D G  EE +S     L +  Y    
Sbjct: 115 KEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKT 174

Query: 158 -------PNQV--ADILDMQEKSVDGKNYYTFEYILT----SPNYSSASIATIAIANGRY 204
                  P+ V  A+IL+    +V+GK+YY F  +LT            + T  + +G+ 
Sbjct: 175 ASEGGFDPDAVATANILEATASNVNGKDYY-FVSVLTRTADGDEGGKHQLITATVNDGKL 233

Query: 205 YTLIVGANERRW-KRVRNKLKVVADSFRI 232
           Y     A ++RW K  R  ++  A SF +
Sbjct: 234 YICKAQAGDKRWFKGARKFVEGAASSFSV 262

May be involved in the regulation of photosystem II.

Cucumis sativus (taxid: 3659)

>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 31/208 (14%)

Query: 56  RRL---LLMGAGLLTANLLPANSLFAQEI-----PKNYDAFVD-RIDGYSYVYPSDWT-- 104
           RRL   LL+GA  + + + PA++ + +       PK    F     DG+    PS W   
Sbjct: 58  RRLALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPN 117

Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LARHVYAAPN 159
            E E+ G    F+D +    NV V   PTDKK + D G  E+ +S     L R  Y+   
Sbjct: 118 KEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKT 177

Query: 160 Q-----------VADILDMQEKSVDGKNYYTFEYILTSPNYSSAS---IATIAIANGRYY 205
                       +A++L+     V GK YY    +  + + +      + T  + +G+ Y
Sbjct: 178 DSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLY 237

Query: 206 TLIVGANERRW-KRVRNKLKVVADSFRI 232
                A ++RW K  +  ++  A SF +
Sbjct: 238 ICKAQAGDKRWFKGAKKFVENTATSFSL 265

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 31/220 (14%)

Query: 44  EDISSDEENKSKRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDG 94
           +D +++  N   RRL   LL+G   + + + PA++ + +       PK N D      DG
Sbjct: 40  QDDANNTSNAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDG 99

Query: 95  YSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN-- 149
           +    P+ W    E EF G    ++D +    N+ V   PTDKK + D G  EE +S   
Sbjct: 100 FKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKVD 159

Query: 150 --LARHVY-----------AAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSAS--- 193
             L +  Y           +     A++L+    +V GK YY    +  + +        
Sbjct: 160 YLLGKQAYFGKTDSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQ 219

Query: 194 IATIAIANGRYYTLIVGANERRW-KRVRNKLKVVADSFRI 232
           + T  + +G+ Y     A ++RW K  +  ++  A SF I
Sbjct: 220 LITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSI 259

May be involved in the regulation of photosystem II.

Solanum tuberosum (taxid: 4113)

>sp|P11594|PSBP_SINAL Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 32/225 (14%)

Query: 40  FTCPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI------PKNYDAFV 89
             C    + +E+N +  RRL   LL+GA  + + + PA++ + +         KN D   
Sbjct: 35  LVCKAQQTHEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTA 94

Query: 90  DRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEV 146
              DG+    P+ W    E E+ G    ++D +    N+ V   PTDKK + D G  EE 
Sbjct: 95  YSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEF 154

Query: 147 VSN----LARHVYAAPN-----------QVADILDMQEKSVDGKNYYTFEYILTSPNYSS 191
           +S     L +  Y                 A+IL+   + V GK YY    +  + +   
Sbjct: 155 LSQVNYLLGKQAYFGETASEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDE 214

Query: 192 AS---IATIAIANGRYYTLIVGANERRWKRVRNK-LKVVADSFRI 232
                + T  +  G+ Y     A ++RW +  NK ++  A SF +
Sbjct: 215 GGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSV 259

May be involved in the regulation of photosystem II.

Sinapis alba (taxid: 3728)

>sp|Q40407|PSBP_NARPS Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 31/205 (15%)

Query: 43  PE-DISSDEENKSKRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRI 92
           PE D +++ +    RRL   +L+G   L + +  A++ + +       PK N D      
Sbjct: 43  PEADCATENDALLSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTG 102

Query: 93  DGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN 149
           DG+  + PS W    E EF G    ++D +    NV V   PTDKK + D G  E+ +S 
Sbjct: 103 DGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQ 162

Query: 150 ----LARHVYAA---------PNQV--ADILDMQEKSVDGKNYYTFEYILTSPNYSSAS- 193
               L +  Y           PN V  A+IL+     V GK+YY+   +  + +      
Sbjct: 163 VDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGK 222

Query: 194 --IATIAIANGRYYTLIVGANERRW 216
             + T  +++G+ Y     A ++RW
Sbjct: 223 HLLITATVSDGKLYICKAQAGDKRW 247

May be involved in the regulation of photosystem II.

Narcissus pseudonarcissus (taxid: 39639)

>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 88/208 (42%), Gaps = 31/208 (14%)

Query: 56  RRL---LLMGAGLLTANLLPANSLFAQEI-----PKNYDAFVD-RIDGYSYVYPSDWT-- 104
           RRL   +L+GA  + + + PA++ + +       PK    F     DG+    PS W   
Sbjct: 57  RRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPN 116

Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LARHVYAAPN 159
            E E+ G    F+D +    NV V   PTDKK + D G  E+ +S     L R  Y+   
Sbjct: 117 KEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKT 176

Query: 160 Q-----------VADILDMQEKSVDGKNYYTFEYILTSPNYSSAS---IATIAIANGRYY 205
                       +A++L+     V GK YY    +  + + +      + T  + +G+ Y
Sbjct: 177 DSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITATVNDGKLY 236

Query: 206 TLIVGANERRW-KRVRNKLKVVADSFRI 232
                A ++RW K  +  ++  A SF +
Sbjct: 237 ICKAQAGDKRWFKGAKKFVENTATSFSL 264

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
224109586	235	predicted protein [Populus trichocarpa]	1.0	1.0	0.676	7e-90
388504902	234	unknown [Lotus japonicus]	0.995	1.0	0.668	2e-89
217072084	234	unknown [Medicago truncatula]	0.995	1.0	0.659	3e-87
388494952	234	unknown [Medicago truncatula]	0.995	1.0	0.651	1e-86
358248758	234	uncharacterized protein LOC100813624 [Gl	0.995	1.0	0.680	2e-86
356536494	234	PREDICTED: psbP-like protein 2, chloropl	0.995	1.0	0.685	1e-85
225449629	235	PREDICTED: psbP-like protein 2, chloropl	1.0	1.0	0.685	2e-84
356576841	231	PREDICTED: psbP-like protein 2, chloropl	0.978	0.995	0.636	5e-80
449464218	236	PREDICTED: psbP-like protein 2, chloropl	1.0	0.995	0.601	7e-73
18405066	238	PsbP-like protein 2 [Arabidopsis thalian	1.0	0.987	0.571	2e-71

>gi|224109586|ref|XP_002315245.1| predicted protein [Populus trichocarpa] gi|222864285|gb|EEF01416.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (860), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 159/235 (67%), Positives = 189/235 (80%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           MA+SSLSL+W STTLS+KL+V   NE+     AFS  N  TC  + + +EE+  KRRLLL
Sbjct: 1   MAISSLSLSWASTTLSQKLSVPGSNEILPRVAAFSGNNSVTCTAEATFNEESNCKRRLLL 60

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G G LT +L+PAN LFA+EIPKNY +FVD  DGYSY YPSDW +F+F GHDS FKDR  
Sbjct: 61  LGVGALTTSLVPANFLFAEEIPKNYTSFVDFEDGYSYYYPSDWIDFDFRGHDSAFKDRTK 120

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTF 180
           QLQNVRVRFIPT+KKD+H+LGPMEE +  L +H YAAPNQ+  I  MQEK+V+GKNYYTF
Sbjct: 121 QLQNVRVRFIPTEKKDIHELGPMEEAIYFLVKHRYAAPNQMPTIYSMQEKTVEGKNYYTF 180

Query: 181 EYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
           EY LTSPNYSS S ATI IANGR+YTLIVGANERRW+R R++LKVVADSF++LDI
Sbjct: 181 EYELTSPNYSSVSFATIVIANGRFYTLIVGANERRWRRYRSQLKVVADSFKVLDI 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504902|gb|AFK40517.1| unknown [Lotus japonicus]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 157/235 (66%), Positives = 188/235 (80%), Gaps = 1/235 (0%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           MAVSS SL+W S  +S KLN+ + N L R  T+ S  N  +C  + +S EE+ S+RRLLL
Sbjct: 1   MAVSSCSLSWTSPCVSHKLNLPHSNHLPR-ITSTSHSNNVSCATETTSSEESHSQRRLLL 59

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G G +TANL P   LFA+EIP  Y AFVD  DGYSYVYPSDW EF+F  HDS FKDRYL
Sbjct: 60  LGIGAITANLQPTRLLFAEEIPDRYRAFVDYSDGYSYVYPSDWKEFDFRAHDSAFKDRYL 119

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTF 180
           QLQNVRVRF+PT+KKD+ D+GP+EEVV NL +H Y+ P Q++ I DMQEK++DGK+YYTF
Sbjct: 120 QLQNVRVRFLPTEKKDIRDMGPIEEVVPNLVKHKYSTPTQISTIYDMQEKNIDGKHYYTF 179

Query: 181 EYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
           EY+LTSPN+SSAS  T+AI NGRYYTLIVGANERRWKRVRN+LKVVADSFR+LDI
Sbjct: 180 EYVLTSPNFSSASFTTVAIGNGRYYTLIVGANERRWKRVRNQLKVVADSFRLLDI 234

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072084|gb|ACJ84402.1| unknown [Medicago truncatula]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/235 (65%), Positives = 184/235 (78%), Gaps = 1/235 (0%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           M VSS SL W S+ LS KLN+ + N L R+ T  S  N  +C  + +S  E   +RR LL
Sbjct: 1   MVVSSCSLTWTSSYLSHKLNLPHSNHLLRNTTTSSSNNV-SCAMETTSSTERHCQRRPLL 59

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G G LTANLLPANSL A+EIP  Y +FVD  DGYSY+YPSDW EF+F  HDS FKDRYL
Sbjct: 60  LGIGALTANLLPANSLLAEEIPDRYRSFVDYEDGYSYIYPSDWKEFDFRAHDSAFKDRYL 119

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTF 180
           QLQNVRVRFIPT+KKDV DLGPMEEV+++L +H Y APNQ   I DMQE+++DGK+YYT 
Sbjct: 120 QLQNVRVRFIPTEKKDVRDLGPMEEVITDLVKHRYTAPNQRPTIYDMQERTIDGKHYYTM 179

Query: 181 EYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
           EY+LTS NY+SAS  T+AI NGRYYTLIVGANERRWK+VR++LKVVADSFR+LDI
Sbjct: 180 EYVLTSRNYASASFTTLAIGNGRYYTLIVGANERRWKKVRDQLKVVADSFRLLDI 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494952|gb|AFK35542.1| unknown [Medicago truncatula]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 153/235 (65%), Positives = 184/235 (78%), Gaps = 1/235 (0%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           M VSS SL W S+ LS KLN+ + N L R+ T  S  N  +C  + +S  E   +RR LL
Sbjct: 1   MVVSSCSLTWTSSYLSHKLNLPHSNHLLRNTTTSSSNNV-SCAMETTSSTERHCQRRPLL 59

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G G LTANLLPANSL A+EIP  Y +FVD  DGYSY+YPSDW EF+F  HDS FKDRYL
Sbjct: 60  LGIGALTANLLPANSLLAEEIPDRYRSFVDYEDGYSYIYPSDWKEFDFRAHDSAFKDRYL 119

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTF 180
           QLQNVRVRFIPT+KKD+ DLGPMEEV+++L +H Y APN+   I DMQE+++DGK+YYT 
Sbjct: 120 QLQNVRVRFIPTEKKDIRDLGPMEEVITDLVKHRYTAPNRRPTIYDMQERTIDGKHYYTM 179

Query: 181 EYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
           EY+LTS NY+SAS  T+AI NGRYYTLIVGANERRWK+VR++LKVVADSFR+LDI
Sbjct: 180 EYVLTSRNYASASFTTLAIGNGRYYTLIVGANERRWKKVRDQLKVVADSFRLLDI 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248758|ref|NP_001239935.1| uncharacterized protein LOC100813624 [Glycine max] gi|255647240|gb|ACU24088.1| unknown [Glycine max]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 160/235 (68%), Positives = 182/235 (77%), Gaps = 1/235 (0%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           M VSS SL+W+S  LS KLN+ + N L R+  A S  N   C  D +   E+  +RR LL
Sbjct: 1   MVVSSCSLSWISPCLSHKLNLPHTNCLPRN-IATSSSNTVFCELDTTPSGESHCRRRPLL 59

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G G LTANL P N +FAQE P  Y AFVD  DGYSYVYP DW EF+F  HDS FKDRYL
Sbjct: 60  LGIGALTANLQPTNLVFAQEKPDRYRAFVDYEDGYSYVYPIDWKEFDFRAHDSAFKDRYL 119

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTF 180
           QLQNVRVRFIPT+KKD+ DLGPMEEV+ +L +H YAAPNQ   I DMQEK++DGK+YYTF
Sbjct: 120 QLQNVRVRFIPTEKKDIRDLGPMEEVIYDLVKHRYAAPNQRPTINDMQEKTIDGKHYYTF 179

Query: 181 EYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
           EYILTSPNYSSAS ATIAI NGRYYTLIVGANERRWKR R++LKVVADSFR+LDI
Sbjct: 180 EYILTSPNYSSASFATIAIGNGRYYTLIVGANERRWKRFRDQLKVVADSFRLLDI 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536494|ref|XP_003536772.1| PREDICTED: psbP-like protein 2, chloroplastic-like [Glycine max]

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 161/235 (68%), Positives = 183/235 (77%), Gaps = 1/235 (0%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           MAVSS SL+W+S  LS KLN+ + N L R+ TA S  N   C  + +   E   +RR LL
Sbjct: 1   MAVSSCSLSWISPCLSHKLNLPHTNCLPRN-TATSSSNTVFCALETNPRGEIFCQRRPLL 59

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G G LTANL P N +FAQE P  Y AFVD  DGYSYVYP DW EF+F  HDS FKDRYL
Sbjct: 60  LGVGALTANLQPINLVFAQEKPDRYRAFVDYEDGYSYVYPIDWKEFDFRAHDSAFKDRYL 119

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTF 180
           QLQNVRVRFIPT+KKD+ +LGPMEEVV +L +H YAAPNQ   I DMQEK++DGK+YYTF
Sbjct: 120 QLQNVRVRFIPTEKKDIRELGPMEEVVYDLVKHRYAAPNQRPTINDMQEKTIDGKHYYTF 179

Query: 181 EYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
           EYILTSPNYSSAS ATIAI NGRYYTLIVGANERRWKR R++LKVVADSFR+LDI
Sbjct: 180 EYILTSPNYSSASFATIAIGNGRYYTLIVGANERRWKRFRDQLKVVADSFRLLDI 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449629|ref|XP_002279556.1| PREDICTED: psbP-like protein 2, chloroplastic [Vitis vinifera] gi|296086288|emb|CBI31729.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/235 (68%), Positives = 187/235 (79%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           MA+SSLSL WVSTT+S KL++ +  ++ R A   SC +   C  + + DEE+  +RR LL
Sbjct: 1   MALSSLSLGWVSTTISNKLDLPHSIDVPRFAAFTSCNSISACSRETAFDEESHLERRSLL 60

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G GLL ANL PA+SL A+EIP NY AFVD  DGYSY YP DW EFEF GHDS FKDRYL
Sbjct: 61  LGVGLLAANLFPASSLHAEEIPANYKAFVDLSDGYSYYYPLDWREFEFRGHDSAFKDRYL 120

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTF 180
           QLQNVRV FIPTDK+D+HDLGPMEEVV NL ++VYAAPNQ+A ILDMQEK VDGKNYYT 
Sbjct: 121 QLQNVRVSFIPTDKRDIHDLGPMEEVVPNLVKNVYAAPNQIATILDMQEKVVDGKNYYTV 180

Query: 181 EYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
           EY LTS N+S AS   +AI NGR+YTL VGANERRWKRVRNKLKVVADSF++LD+
Sbjct: 181 EYELTSANFSRASFVILAIGNGRFYTLNVGANERRWKRVRNKLKVVADSFKVLDM 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576841|ref|XP_003556538.1| PREDICTED: psbP-like protein 2, chloroplastic-like [Glycine max]

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 147/231 (63%), Positives = 175/231 (75%), Gaps = 1/231 (0%)

Query: 5   SLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAG 64
           ++SL+W+S  LS KLN+ + N L R+    S    F C  + +   E+  +RR LL+G G
Sbjct: 2   AISLSWISPCLSHKLNLPHSNCLPRNTATSSTSTVF-CALETTPGGESHCQRRPLLLGIG 60

Query: 65  LLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQN 124
            LTANL P N +FAQE       F+D  DGYSY+YP DW EF+F   DS FKDRYLQLQN
Sbjct: 61  ALTANLQPTNLVFAQEKSDRCRVFLDYEDGYSYIYPIDWKEFDFRALDSAFKDRYLQLQN 120

Query: 125 VRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYIL 184
           VRV+ IPT+KKD+ DLGPMEEV+ NL +H+YAAPNQ   I DMQEK++DGK+YYTFEYIL
Sbjct: 121 VRVKSIPTEKKDIRDLGPMEEVIYNLVKHIYAAPNQRPTIKDMQEKTIDGKHYYTFEYIL 180

Query: 185 TSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
           TSPNYSSAS ATIAI NGRYYTLIVGANERRWKR R++LKVVADSFR+LDI
Sbjct: 181 TSPNYSSASFATIAIGNGRYYTLIVGANERRWKRFRDQLKVVADSFRLLDI 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464218|ref|XP_004149826.1| PREDICTED: psbP-like protein 2, chloroplastic-like [Cucumis sativus]

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/236 (60%), Positives = 176/236 (74%), Gaps = 1/236 (0%)

Query: 1   MAVSSLSLNWVSTTLSK-KLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLL 59
           MAVS+  L+WV  T S  KL +   NE + + ++FS  +   C  +  S +E    RR L
Sbjct: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60

Query: 60  LMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRY 119
           L+G G L  +LL A+ LFA+EIPKNY AFVD  DGYSY YPSDW EF+F  HDS FKDRY
Sbjct: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 120 LQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYT 179
           LQLQNVRV+FIPT+KKD+H+ GP++EVV+ L +H YAAPNQ   I DM+E+++DGK YYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKIYYT 180

Query: 180 FEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
           FEY L+S  +S  S ATIAIANGRYYTL+VGAN+RRW+R R+ LKVVADSFR+LDI
Sbjct: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 236

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405066|ref|NP_565906.1| PsbP-like protein 2 [Arabidopsis thaliana] gi|75099839|sp|O80634.2|PPL2_ARATH RecName: Full=PsbP-like protein 2, chloroplastic; Flags: Precursor gi|14532688|gb|AAK64145.1| unknown protein [Arabidopsis thaliana] gi|20197110|gb|AAC27838.2| PsbP domain protein, putative [Arabidopsis thaliana] gi|21553760|gb|AAM62853.1| unknown [Arabidopsis thaliana] gi|22136776|gb|AAM91732.1| unknown protein [Arabidopsis thaliana] gi|330254588|gb|AEC09682.1| PsbP-like protein 2 [Arabidopsis thaliana]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 136/238 (57%), Positives = 166/238 (69%), Gaps = 3/238 (1%)

Query: 1   MAVSSLSL--NWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDI-SSDEENKSKRR 57
           MAVSSLS+     S T+S K  +  PN   ++    S        E        N  KRR
Sbjct: 1   MAVSSLSIRCGGFSPTISHKTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRR 60

Query: 58  LLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKD 117
             L+G G L A  +PA  L A+EIPK+Y  FVDR DGYSY YPSDW EF+F  HDS FKD
Sbjct: 61  QALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKD 120

Query: 118 RYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNY 177
           RYLQLQNVRVRFIPT+K D+H++GPMEEVV +L +H +AAPNQVA I DM+E+  DGKNY
Sbjct: 121 RYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNY 180

Query: 178 YTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
           YTFEY L +P Y++ S AT+A+ N RYYTLIVGANERRW++V+ +L+VVADS +IL I
Sbjct: 181 YTFEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2039727	238	PnsL1 "Photosynthetic NDH subc	1.0	0.987	0.554	2.3e-64
TAIR|locus:2100681	230	PPL1 "PsbP-like protein 1" [Ar	0.791	0.808	0.372	2.6e-31
TAIR|locus:2033087	263	PSBP-1 "photosystem II subunit	0.608	0.543	0.296	3.6e-07
TAIR|locus:2130295	287	PPD1 "PsbP-Domain Protein1" [A	0.612	0.501	0.291	1.6e-06
TAIR|locus:2079792	280	AT3G05410 [Arabidopsis thalian	0.463	0.389	0.282	0.00041

TAIR|locus:2039727 PnsL1 "Photosynthetic NDH subcomplex L 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 132/238 (55%), Positives = 158/238 (66%)

Query:     1 MAVSSLSLNW--VSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDI-SSDEENKSKRR 57
             MAVSSLS+     S T+S K  +  PN   ++    S        E        N  KRR
Sbjct:     1 MAVSSLSIRCGGFSPTISHKTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRR 60

Query:    58 LLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKD 117
               L+G G L A  +PA  L A+EIPK+Y  FVDR DGYSY YPSDW EF+F  HDS FKD
Sbjct:    61 QALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKD 120

Query:   118 RYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNY 177
             RYLQLQNVRVRFIPT+K D+H++GPMEEVV +L +H +AAPNQVA I DM+E+  DGKNY
Sbjct:   121 RYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNY 180

Query:   178 YTFEYILTSPNYXXXXXXXXXXXNGRYYTLIVGANERRWKRVRNKLKVVADSFRILDI 235
             YTFEY L +P Y           N RYYTLIVGANERRW++V+ +L+VVADS +IL I
Sbjct:   181 YTFEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2100681 PPL1 "PsbP-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 70/188 (37%), Positives = 104/188 (55%)

Query:    47 SSDEENKSKRRLLL-MGAGLLTANLLPANSL-FAQEIPKNYDAFVDRIDGYSYVYPSDWT 104
             SS  ++K +RRL++  G      +LL    L FA E  K + A  D  D Y+++YP  W 
Sbjct:    41 SSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQ 100

Query:   105 EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADI 164
             E    G D  +KD    L++V V  +PT K+ + + GP +++   L + V A PNQ   +
Sbjct:   101 EVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTL 160

Query:   165 LDMQEKSVDGKNYYTFEYILTSPNYXXXXXXXXXXXNGRYYTLIVGANERRWKRVRNKLK 224
             +D  E  VDGK YY FE+ + + NY           NG +YTL  GANERRW++++++L 
Sbjct:   161 IDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLH 220

Query:   225 VVADSFRI 232
              V DSF+I
Sbjct:   221 TVVDSFKI 228

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2033087 PSBP-1 "photosystem II subunit P-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 51/172 (29%), Positives = 76/172 (44%)

Query:    42 CPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDR 91
             C    S +++N +  RRL   LL+GA  + + + PA++ + +       PK N D     
Sbjct:    40 CKAQQSHEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYN 99

Query:    92 IDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVS 148
              DG+    P+ W    E E+ G    F+D +    N+ V   PTDKK + D G  EE +S
Sbjct:   100 GDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLS 159

Query:   149 N----LARHVYAAP---------NQVA--DILDMQEKSVDGKNYYTFEYILT 185
                  L +  Y            N VA  +IL+   + V GK YY    +LT
Sbjct:   160 QVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLS-VLT 210

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019898 "extrinsic to membrane" evidence=TAS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA;TAS

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2130295 PPD1 "PsbP-Domain Protein1" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 47/161 (29%), Positives = 71/161 (44%)

Query:    38 NFFTCPEDISSDEENKSKRRLLLMGAGLLTANL-LPANSLFAQEIPKNYDAFVDRIDGYS 96
             N  T  + + +    KS    LLM +GL+ +   LP  + FA   P  +  ++D  DGYS
Sbjct:    66 NCLTDAKQVCAVGRRKSMMMGLLM-SGLIVSQANLP--TAFAST-PV-FREYIDTFDGYS 120

Query:    97 YVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFI-PTDKK--DVHDLGPMEEVVSNLARH 153
             + YP +W +    G D  F+D  +  +N+ V F  P+      + DLG  EEV   + R 
Sbjct:   121 FKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQ 180

Query:   154 VYA-------APNQVADILDMQEKSVD-GKNYYTFEYILTS 186
                          + A+IL    +  D GK YY  E  + S
Sbjct:   181 YLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKS 221

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048564 "photosystem I assembly" evidence=IMP

TAIR|locus:2079792 AT3G05410 [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
 Identities = 33/117 (28%), Positives = 50/117 (42%)

Query:   124 NVRVRFIPTDKK-DVHDLGPMEEVVSNLARHVYAAPNQVADILD-MQEKSV--DGKN--- 176
             NV V   P      +   G  +EV   + R V  +  Q AD+   + E S+  D +    
Sbjct:   164 NVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVTGS-GQRADLKGTLLESSIRQDSERNLK 222

Query:   177 YYTFEYILTSPNYXXXXXXXXXXXNGRYYTLIVGANERRWKRVRNKLKVVADSFRIL 233
             YY  E+ + SP +           +GR YTL   A E  W  V++++   A SF I+
Sbjct:   223 YYELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQAPESAWSEVKSEIYTTAKSFNII 279

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80634	PPL2_ARATH	No assigned EC number	0.5714	1.0	0.9873	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_X1887	hypothetical protein (235 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIII.355.1	hypothetical protein (158 aa)			•	•			•		0.692
	estExt_Genewise1_v1.C_LG_X6026	hypothetical protein (200 aa)			•	•					0.620
	eugene3.00160848	hypothetical protein (215 aa)			•	•					0.615
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.597
	fgenesh4_pm.C_LG_II001205	RecName- Full=Photosystem II reaction center psb28 protein; (115 aa)			•	•					0.588
	estExt_Genewise1_v1.C_LG_II4195	SubName- Full=Putative uncharacterized protein; (140 aa)			•	•					0.586
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)			•	•			•		0.570
	gw1.152.106.1	hypothetical protein (199 aa)			•	•			•		0.568
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)			•	•			•		0.561
	estExt_Genewise1_v1.C_LG_V0051	hypothetical protein (130 aa)			•				•		0.559

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
pfam01789	163	pfam01789, PsbP, PsbP	5e-34
PLN00042	260	PLN00042, PLN00042, photosystem II oxygen-evolving	4e-16
PLN00066	262	PLN00066, PLN00066, PsbP domain-containing protein	1e-13
PLN00059	286	PLN00059, PLN00059, PsbP domain-containing protein	1e-08
PLN00067	263	PLN00067, PLN00067, PsbP domain-containing protein	0.001

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score =  119 bits (301), Expect = 5e-34
 Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 5/162 (3%)

Query: 77  FAQEIPKNYDAFVDRIDGYSYVYPSDWT-EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKK 135
              +    + A+VD  DGY ++YP+ W  E    G D  F D     +NV V   P DKK
Sbjct: 2   CKAKTNAGFQAYVDTDDGYEFLYPTGWWREVVSDGPDVVFHDLIESDENVSVVISPVDKK 61

Query: 136 -DVHDLGPMEEVVSNLARHVYAAPN--QVADILDMQEKSVDGKNYYTFEYILTSPN-YSS 191
             + DLG  EEV   L R V A     + A++L+  E+ VDGK YY  EY++   +    
Sbjct: 62  KSLEDLGSPEEVGERLLRGVLAPEGSGREAELLEASEREVDGKTYYDLEYLVRLADGGDR 121

Query: 192 ASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRIL 233
             +AT+ +  G+ YTL    NE+RW +V+   + V DSF + 
Sbjct: 122 HELATVTVDRGKLYTLAAQTNEKRWFKVKKLFERVVDSFSVA 163

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

>gnl|CDD|177676 PLN00042, PLN00042, photosystem II oxygen-evolving enhancer protein 2; Provisional

 Score = 74.8 bits (184), Expect = 4e-16
 Identities = 61/220 (27%), Positives = 93/220 (42%), Gaps = 41/220 (18%)

Query: 49  DEENKSKRRL---LLMGAGLLTANLLPANSLFAQEI-----PKNYDAFVDRI-DGYSYVY 99
           ++ +   RR    LL GA    A + PAN+ + +       PK    F+    DG+  + 
Sbjct: 45  EDNSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYNGDGFKLLV 104

Query: 100 PSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LAR 152
           PS W    E EF G    F+D +    N+ V   PTDKK + D G  EE +S     L +
Sbjct: 105 PSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGK 164

Query: 153 HVYA---------APNQV--ADILDMQEKSVDGKNYYTFEYILTSPNYSSA--------S 193
             Y+           N V  A +L+   + V GK YY    +LT     +A         
Sbjct: 165 QAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLS-VLT----RTADGDEGGKHQ 219

Query: 194 IATIAIANGRYYTLIVGANERRW-KRVRNKLKVVADSFRI 232
           + T  +++G+ Y     A ++RW K  R  ++  A SF +
Sbjct: 220 LITATVSDGKLYICKAQAGDKRWFKGARKFVEGAASSFSV 259

Length = 260

>gnl|CDD|215046 PLN00066, PLN00066, PsbP domain-containing protein 4; Provisional

 Score = 68.3 bits (167), Expect = 1e-13
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 20/155 (12%)

Query: 92  IDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVR-----------VRFIPT--DKKDVH 138
           I  YS+  P  W E   +  D G  +  L+  + +           +RF     D   + 
Sbjct: 112 ITPYSFKVPQGWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIE 171

Query: 139 DLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSASIATIA 198
           ++GP E+V+S     +   P +   +L M+     G+ YY FE     P ++   + T  
Sbjct: 172 EIGPPEKVISGFGPELIGEPVEEGKVLSMEVAEHSGRTYYQFEL----PPHT---LVTAT 224

Query: 199 IANGRYYTLIVGANERRWKRVRNKLKVVADSFRIL 233
            A  R Y   V AN  +WKR    LK +A SFR++
Sbjct: 225 AAGNRVYIFSVTANGLQWKRHYKDLKRIAKSFRVV 259

Length = 262

>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional

 Score = 54.0 bits (129), Expect = 1e-08
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 32/208 (15%)

Query: 55  KRRLLLMGAGLLTANLL--PANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHD 112
           +R+ ++MG  LL + L+   AN   A      +  ++D  DGYS+ YP +W +    G D
Sbjct: 79  RRKSMMMG--LLMSGLIVSEANLPTAFASIPVFREYIDTFDGYSFKYPQNWIQVRGAGAD 136

Query: 113 SGFKDRYLQLQNVRVRF-IPTDKK--DVHDLGPMEEVVSNLARHVYA-------APNQVA 162
             F+D  +  +N+ V F  P+  K   + DLG  EEV   + R              + A
Sbjct: 137 IFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREA 196

Query: 163 DILDMQEKSV-DGKNYYTFEYILTS-----------------PNYSSASIATIAIANGRY 204
           +IL    +   DGK YY  E  + S                   ++   +A + + N R 
Sbjct: 197 NILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRL 256

Query: 205 YTLIVGANERRWKRVRNKLKVVADSFRI 232
           Y++ +   E+ +      L+ V DSFR+
Sbjct: 257 YSIRLQTPEKVFLEEEKDLRRVMDSFRV 284

Length = 286

>gnl|CDD|177697 PLN00067, PLN00067, PsbP domain-containing protein 6; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 21/99 (21%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 137 VHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSASIAT 196
           + ++G  E+++++L   V        ++L+   + +  + YY   Y+L +P ++      
Sbjct: 168 IEEIGSPEKLIASLGPFVTGNSYDPDELLETSVEKIGDQTYYK--YVLETP-FALTGSHN 224

Query: 197 IAIANGRYYTL---IVGANERRWKRVRNKLKVVADSFRI 232
           +A A  +  T+   +V A++++W+     LK + DSF+ 
Sbjct: 225 LAKATAKGNTVVLFVVSASDKQWQSSEKTLKAILDSFQA 263

Length = 263

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	99.96
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	98.6
COG5435	147	Uncharacterized conserved protein [Function unknow	96.92
PRK11615	185	hypothetical protein; Provisional	96.77
PF10738	175	Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR	95.3
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	94.42
COG4784	479	Putative Zn-dependent protease [General function p	91.66
PF07174	297	FAP: Fibronectin-attachment protein (FAP); InterPr	80.83

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=1.4e-47  Score=332.23  Aligned_cols=200  Identities=28%  Similarity=0.498  Sum_probs=169.4

Q ss_pred             ccccccCCccceeeecCCCCcccccchhhHHHHH---HHHHHhhcccCCCcccccc-----cc---CcccceeecCCceE
Q 026701           28 TRSATAFSCQNFFTCPEDISSDEENKSKRRLLLM---GAGLLTANLLPANSLFAQE-----IP---KNYDAFVDRIDGYS   96 (235)
Q Consensus        28 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~RR~~L~---g~~a~~a~~~pa~~a~a~~-----~p---~g~~~y~D~~~gys   96 (235)
                      +|.....++.. ++|.++++  ....++||.+|+   |++++++.+.|+.+||+++     .|   .||.+|.  +|||+
T Consensus        27 ~~~~~~~~~~~-~~~~~~~~--~~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~  101 (260)
T PLN00042         27 ARAVSASRPSQ-VVCRAQEE--DNSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFK  101 (260)
T ss_pred             ccccCCCCCcc-eeeecccc--ccccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeE
Confidence            44455566666 59999865  335678998876   3334457788999999987     34   6899997  59999


Q ss_pred             EEcCCCce---eeeecCccceeeccccCcccEEEEEecCCCCCccccCChHHH----HHHHHhhHhcCC---------CC
Q 026701           97 YVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEV----VSNLARHVYAAP---------NQ  160 (235)
Q Consensus        97 f~~P~~W~---e~~~~g~d~~f~d~~~~~~nVsV~i~p~~~~si~d~Gspeev----a~~l~~~~~~~p---------~~  160 (235)
                      |+||.+|+   +.+++|+|++|+|++++.+||+|+|.|+++++|+|||+|||+    .+.|+++++.++         ++
T Consensus       102 FlyP~~W~~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~  181 (260)
T PLN00042        102 LLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANA  181 (260)
T ss_pred             EecCCCCccccccccCCceEEeeccccccccEEEEEecCCcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCccc
Confidence            99999995   667889999999999999999999999999999999999994    556777777543         32


Q ss_pred             --ceEEEEeeeeeeCCeeEEEEEEEEeCCC---CcceEEEEEEEECCeEEEEEEEecchhhHHH-HHHHHhhhcccee
Q 026701          161 --VADILDMQEKSVDGKNYYTFEYILTSPN---YSSASIATIAIANGRYYTLIVGANERRWKRV-RNKLKVVADSFRI  232 (235)
Q Consensus       161 --~a~ll~a~~~~~dG~~YY~~Ey~~~s~~---~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~-~~~l~~vv~SFrv  232 (235)
                        .++|++++++++||++||+|||.+++++   ++||+|++++|.+||||||++|+||+||.|. ++.|+.|++||+|
T Consensus       182 vata~Lleas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~GkLYtl~aqa~EkRW~K~~~k~l~~v~~SFsV  259 (260)
T PLN00042        182 VATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSDGKLYICKAQAGDKRWFKGARKFVEGAASSFSV  259 (260)
T ss_pred             ccceeEEEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEEECCEEEEEEecCchhhhhHHHHHHHHHHHhceec
Confidence              4689999999999999999999999886   7999999999999999999999999999997 7789999999997

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=3.2e-45  Score=316.60  Aligned_cols=194  Identities=27%  Similarity=0.438  Sum_probs=164.9

Q ss_pred             cceeeecCCCCcccccchhhHHHHH-HHH--HHhhcccCCCccccccccCcccceeecCCceEEEcCCCceeeeecCccc
Q 026701           37 QNFFTCPEDISSDEENKSKRRLLLM-GAG--LLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDS  113 (235)
Q Consensus        37 ~~~~~c~~~~~~~~~~~~~RR~~L~-g~~--a~~a~~~pa~~a~a~~~p~g~~~y~D~~~gysf~~P~~W~e~~~~g~d~  113 (235)
                      -..+.|.-+  ....-++.||.+++ ++.  .+.......+.|+|+  |+||+.|.|+.|||+|.||.||.++...|+|+
T Consensus        62 ~~~~~~~~~--~~~~~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~--~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DV  137 (286)
T PLN00059         62 PVAINCLTD--AKQVCAVGRRKSMMMGLLMSGLIVSEANLPTAFAS--IPVFREYIDTFDGYSFKYPQNWIQVRGAGADI  137 (286)
T ss_pred             Ceeeecccc--hhhhhhhhhhhhhHHHHHHHHHHHHhhcCchhhcC--CcccceeEcCCCCeEEeCCCCCeEeccCCCce
Confidence            334567754  44556889999865 332  122222223456665  67999999999999999999999999999999


Q ss_pred             eeeccccCcccEEEEEecCC---CCCccccCChHHHHHHHHhhHhcCC-------CCceEEEEeeeeee-CCeeEEEEEE
Q 026701          114 GFKDRYLQLQNVRVRFIPTD---KKDVHDLGPMEEVVSNLARHVYAAP-------NQVADILDMQEKSV-DGKNYYTFEY  182 (235)
Q Consensus       114 ~f~d~~~~~~nVsV~i~p~~---~~si~d~Gspeeva~~l~~~~~~~p-------~~~a~ll~a~~~~~-dG~~YY~~Ey  182 (235)
                      +|+|+.+..+||+|+|.|++   +++|+|||+|++|+++|+++++++|       +++++|+++.+++. ||++||++||
T Consensus       138 vFrD~Ie~~ENVSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY  217 (286)
T PLN00059        138 FFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEV  217 (286)
T ss_pred             EEeccCccccceEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEE
Confidence            99999999999999999754   7999999999999999999999864       37899999998855 9999999999


Q ss_pred             EEeCC-----------------CCcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhccceeee
Q 026701          183 ILTSP-----------------NYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILD  234 (235)
Q Consensus       183 ~~~s~-----------------~~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFrv~~  234 (235)
                      .++++                 ++.||.|++++|.+||||||++|+||++|+++++.|++|++||+|.+
T Consensus       218 ~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA~v~V~nGkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~~  286 (286)
T PLN00059        218 NIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEK  286 (286)
T ss_pred             EEEcCcccccccccccccccccccceeeEEEEEEeCCEEEEEEcCCcHHHHHHHHHHHHHHHhheeecC
Confidence            99874                 46999999999999999999999999999999999999999999974

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=2.2e-41  Score=282.68  Aligned_cols=161  Identities=39%  Similarity=0.695  Sum_probs=142.1

Q ss_pred             CCccccccccCcccceeecCCceEEEcCCCceeeeecCccceeeccccCcccEEEEEecCCCC-CccccCChHHHHHHHH
Q 026701           73 ANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKK-DVHDLGPMEEVVSNLA  151 (235)
Q Consensus        73 a~~a~a~~~p~g~~~y~D~~~gysf~~P~~W~e~~~~g~d~~f~d~~~~~~nVsV~i~p~~~~-si~d~Gspeeva~~l~  151 (235)
                      +..+.+++.+.||+.|.|+.+||+|.||.+|+++++.|++++|+|+.+..+||+|+|.|.... +|+|||+|+++++.|+
T Consensus        11 ~~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~~l~   90 (175)
T PF01789_consen   11 ANVACAAEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAERLL   90 (175)
T ss_dssp             -----STT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHHHHH
T ss_pred             chhhhcccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHHHHh
Confidence            344444456789999999999999999999999999999999999999999999999997655 9999999999999999


Q ss_pred             hhHhcCCC--CceEEEEeeeeeeCCeeEEEEEEEEeCCC-CcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhc
Q 026701          152 RHVYAAPN--QVADILDMQEKSVDGKNYYTFEYILTSPN-YSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVAD  228 (235)
Q Consensus       152 ~~~~~~p~--~~a~ll~a~~~~~dG~~YY~~Ey~~~s~~-~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~  228 (235)
                      +...+.++  +.++|+++.+++.+|++||+|||++++++ +.||.++++++.+|+||+|++|++|++|+++++.|++|++
T Consensus        91 ~~~~~~~~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~g~lY~l~~~a~e~~w~k~~~~l~~iv~  170 (175)
T PF01789_consen   91 NGELASPGSGREAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVKNGKLYTLTAQAPESRWDKVEPKLRKIVD  170 (175)
T ss_dssp             HHCCCHCTSSEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEHHHHHTCHHHHHHHHH
T ss_pred             hhhcccccCCcceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEECCEEEEEEEEcCHHHHHHHHHHHHHHHh
Confidence            99887776  78999999999999999999999999988 9999999999999999999999999999999999999999


Q ss_pred             cceee
Q 026701          229 SFRIL  233 (235)
Q Consensus       229 SFrv~  233 (235)
                      ||+|.
T Consensus       171 SF~v~  175 (175)
T PF01789_consen  171 SFRVY  175 (175)
T ss_dssp             C-EE-
T ss_pred             cEEeC
Confidence            99984

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=8e-41  Score=289.44  Aligned_cols=180  Identities=21%  Similarity=0.425  Sum_probs=152.0

Q ss_pred             ccchhhHHHHHHHHHHhhccc-CCCcccccc------c---c--Ccccceeec-----------CCceEEEcCCCceeee
Q 026701           51 ENKSKRRLLLMGAGLLTANLL-PANSLFAQE------I---P--KNYDAFVDR-----------IDGYSYVYPSDWTEFE  107 (235)
Q Consensus        51 ~~~~~RR~~L~g~~a~~a~~~-pa~~a~a~~------~---p--~g~~~y~D~-----------~~gysf~~P~~W~e~~  107 (235)
                      .....||++|.|+++....+. +..++.|.|      +   |  .||..|...           ..||+|+||.+|+++.
T Consensus        40 ~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~  119 (263)
T PLN00067         40 AVVIHRRELLLGLALAPLILIAPEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTR  119 (263)
T ss_pred             cchhHHHHHHhhhhhhhhhhccCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCcc
Confidence            445789999998765433322 222333432      1   2  378877654           3599999999998877


Q ss_pred             ec----C-----------ccceeeccccCcccEEEEEecC------CCCCccccCChHHHHHHHHhhHhcCCCCceEEEE
Q 026701          108 FT----G-----------HDSGFKDRYLQLQNVRVRFIPT------DKKDVHDLGPMEEVVSNLARHVYAAPNQVADILD  166 (235)
Q Consensus       108 ~~----g-----------~d~~f~d~~~~~~nVsV~i~p~------~~~si~d~Gspeeva~~l~~~~~~~p~~~a~ll~  166 (235)
                      ++    |           +|++|+|..  .+||+|+|.|.      ++.+|+|||+||+|++.|++.+.+.+++..+|++
T Consensus       120 Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~~~~~~eLLe  197 (263)
T PLN00067        120 VANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGNSYDPDELLE  197 (263)
T ss_pred             ccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcCCCCCcceEE
Confidence            65    3           799999965  56999999995      4689999999999999999999988888899999


Q ss_pred             eeeeeeCCeeEEEEEEEEeCCCCcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhcccee
Q 026701          167 MQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRI  232 (235)
Q Consensus       167 a~~~~~dG~~YY~~Ey~~~s~~~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFrv  232 (235)
                      +++++.||++||.|||.++.++++||+|+++++++|+||||++|++|+||.|+++.|++|++||+|
T Consensus       198 As~re~dGktYY~~E~~tp~a~~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~l~~V~dSFsV  263 (263)
T PLN00067        198 TSVEKIGDQTYYKYVLETPFALTGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKTLKAILDSFQA  263 (263)
T ss_pred             eeeEeeCCeEEEEEEEEecCCCCCceEEEEEEEECCEEEEEEecCCHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999986

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=2.6e-38  Score=276.36  Aligned_cols=176  Identities=27%  Similarity=0.506  Sum_probs=146.1

Q ss_pred             cccchhhHHHHHHHHHH---hhcccCCCcc------cccccc-------CcccceeecC-------------CceEEEcC
Q 026701           50 EENKSKRRLLLMGAGLL---TANLLPANSL------FAQEIP-------KNYDAFVDRI-------------DGYSYVYP  100 (235)
Q Consensus        50 ~~~~~~RR~~L~g~~a~---~a~~~pa~~a------~a~~~p-------~g~~~y~D~~-------------~gysf~~P  100 (235)
                      ....++||.+|++.+++   ++.+.|+.+.      .|..+|       .||++|..|.             .+|+|.||
T Consensus        41 ~~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP  120 (262)
T PLN00066         41 VATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVP  120 (262)
T ss_pred             hcchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECC
Confidence            34578999999854333   2223443221      233443       5899999883             47999999


Q ss_pred             CCceeeeec-----C--ccceeeccccCcccEEEEEecC--------CCCCccccCChHHHHHHHHhhHhcCCCCceEEE
Q 026701          101 SDWTEFEFT-----G--HDSGFKDRYLQLQNVRVRFIPT--------DKKDVHDLGPMEEVVSNLARHVYAAPNQVADIL  165 (235)
Q Consensus       101 ~~W~e~~~~-----g--~d~~f~d~~~~~~nVsV~i~p~--------~~~si~d~Gspeeva~~l~~~~~~~p~~~a~ll  165 (235)
                      .||+|+.++     |  .|.+|.+  ...+||+|+|.|.        ++.+|+|||+||+|++.|++++++++.++++|+
T Consensus       121 ~GW~ev~VS~~d~gg~~vd~Rf~~--~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~~e~eLl  198 (262)
T PLN00066        121 QGWEEVPVSIADLGGTEIDLRFAS--DKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKVL  198 (262)
T ss_pred             CCCeEeecccccCCCCceEEEecc--CCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCCcccccee
Confidence            999998876     4  3456665  5678999999995        578999999999999999999988888889999


Q ss_pred             EeeeeeeCCeeEEEEEEEEeCCCCcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhccceeee
Q 026701          166 DMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILD  234 (235)
Q Consensus       166 ~a~~~~~dG~~YY~~Ey~~~s~~~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFrv~~  234 (235)
                      ++++++.||++||+|||       .+|+|+++||.+||||+|++++||+||++.++.|++|++||+|++
T Consensus       199 ~a~~re~dGktYY~~E~-------~rH~LasaTV~~GrLYt~~asape~rW~k~~~~lr~v~dSF~V~~  260 (262)
T PLN00066        199 SMEVAEHSGRTYYQFEL-------PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDLKRIAKSFRVVT  260 (262)
T ss_pred             EeeeeecCCcEEEEEEE-------eCceEEEEEEECCEEEEEEeecchHhhHHHHHHHHHHhhceeeec
Confidence            99999999999999999       289999999999999999999999999999999999999999974

>PLN03152 hypothetical protein; Provisional

Probab=99.96  E-value=3.5e-29  Score=211.75  Aligned_cols=138  Identities=22%  Similarity=0.374  Sum_probs=111.1

Q ss_pred             CcccceeecCCceEEEcCCCceeee----ec-Cc------------cceeeccccCcccEEEEEecC--------CCCCc
Q 026701           83 KNYDAFVDRIDGYSYVYPSDWTEFE----FT-GH------------DSGFKDRYLQLQNVRVRFIPT--------DKKDV  137 (235)
Q Consensus        83 ~g~~~y~D~~~gysf~~P~~W~e~~----~~-g~------------d~~f~d~~~~~~nVsV~i~p~--------~~~si  137 (235)
                      +.|..|.  ++||++.||.+++...    +. |-            ..||..+ |..+||+|+|.|.        +.++|
T Consensus        76 ~~w~~~~--g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDL  152 (241)
T PLN03152         76 KSWFQFY--GDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDI  152 (241)
T ss_pred             hhhhhhh--CCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCCh
Confidence            4577776  8999999999995432    11 11            1234332 4568999999995        57899


Q ss_pred             cccCChHHHHHHHHhhHhcCCCC---ceEEEEeeeeeeCCeeEEEEEEEEeCCCCcceEEEEEEEECCeEEEEEEEecch
Q 026701          138 HDLGPMEEVVSNLARHVYAAPNQ---VADILDMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANER  214 (235)
Q Consensus       138 ~d~Gspeeva~~l~~~~~~~p~~---~a~ll~a~~~~~dG~~YY~~Ey~~~s~~~~rH~l~~~tv~~g~LYtl~~~a~e~  214 (235)
                      .|||+|+||++.|++     ++.   .++.++.+ ++.||++||+|||.+.    .||.|++++|.+||||||+++++|+
T Consensus       153 tDLGsp~EVgkv~vP-----~g~~~~saR~iel~-~E~dGKtYY~lEy~v~----~RH~LaTVaVsrGKLYTl~aSt~Ek  222 (241)
T PLN03152        153 TDLGSLKEAAKIFVP-----GGATLYSARTIKVK-EEEGIRTYYFYEFGRD----EQHVALVATVNSGKAYIAGATAPES  222 (241)
T ss_pred             hHcCCHHHHHHhhCC-----Ccccccccceeeee-eecCCceeEEEEEEeC----CcEEEEEEEEcCCeEEEEecCCchh
Confidence            999999999977653     332   35555554 3789999999999974    7999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhccceee
Q 026701          215 RWKRVRNKLKVVADSFRIL  233 (235)
Q Consensus       215 ~W~k~~~~l~~vv~SFrv~  233 (235)
                      ||+|++.+|+++++||.|+
T Consensus       223 RW~Kvk~kfr~aa~SFsV~  241 (241)
T PLN03152        223 KWDDDGVKLRSAAISLTVL  241 (241)
T ss_pred             chHHHHHHHHHHHhheeeC
Confidence            9999999999999999985

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=98.60  E-value=3.5e-06  Score=66.68  Aligned_cols=127  Identities=13%  Similarity=0.124  Sum_probs=86.8

Q ss_pred             EEEcCCCceeeeecCccceeeccccCcccEEEEEecCCCCCccccCChHHHHHHHHhhHhcCCCCceEEEEeeeeeeCCe
Q 026701           96 SYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGK  175 (235)
Q Consensus        96 sf~~P~~W~e~~~~g~d~~f~d~~~~~~nVsV~i~p~~~~si~d~Gspeeva~~l~~~~~~~p~~~a~ll~a~~~~~dG~  175 (235)
                      +|..|.+|+....  +...+.+......++.|.-.+.     .+=.++++..++.+...- .--...++++....+.+|.
T Consensus         3 ~~~lP~~~~D~t~--nv~~~~~~~~~~~slvIsR~~l-----~~g~tl~~~~~~q~~~l~-~~l~~~~~~~~~~~~l~~~   74 (130)
T PF08786_consen    3 SLTLPDGWQDRTM--NVLVLPDSGGSGPSLVISRDPL-----PDGETLEDYLQRQLAQLR-KQLPGFQLVERQPITLGGR   74 (130)
T ss_dssp             EEEEETTSEE--B--EEEEE--BTTB-EEEEEEEE--------TTS-HHHHHHHHHHHHH-CCSTT-EEEEEEEEEETTE
T ss_pred             eEeCCCcceeceE--EEEEccCCCCCcceEEEEeccC-----CCCCCHHHHHHHHHHHHH-hhCCCcEEEeeEEEEeCCC
Confidence            6788999988653  3345555433233444433322     222456667766555442 2223467777777789999


Q ss_pred             eEEEEEEEEeCCCCcceEEEEEEEEC-CeEEEEEEEecchhhHHHHHHHHhhhccc
Q 026701          176 NYYTFEYILTSPNYSSASIATIAIAN-GRYYTLIVGANERRWKRVRNKLKVVADSF  230 (235)
Q Consensus       176 ~YY~~Ey~~~s~~~~rH~l~~~tv~~-g~LYtl~~~a~e~~W~k~~~~l~~vv~SF  230 (235)
                      +.+.+||.+...+..-|...++...+ +++|+++.+++....+..++.++.+++||
T Consensus        75 ~a~~l~~~~~~~g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf  130 (130)
T PF08786_consen   75 PARELEYSFRSGGQPVYQRQAAVLLPGRRVLVFTYTAPGPFTEEQRAHWEAILKSF  130 (130)
T ss_dssp             EEEEEEEEEEETTCEEEEEEEEEEEC-CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred             CeEEEEEEEeeCCEEEEEEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            99999999987777779998888888 99999999999999999999999999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.037  Score=45.07  Aligned_cols=129  Identities=12%  Similarity=0.082  Sum_probs=79.0

Q ss_pred             EEEcCCCceeeeecCccceeeccccCcccEEEEEecCCCCCccccCChHHHHHHHHhhHhc-CCCCceEEEEeeeeeeCC
Q 026701           96 SYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYA-APNQVADILDMQEKSVDG  174 (235)
Q Consensus        96 sf~~P~~W~e~~~~g~d~~f~d~~~~~~nVsV~i~p~~~~si~d~Gspeeva~~l~~~~~~-~p~~~a~ll~a~~~~~dG  174 (235)
                      +|..|+.|+...+.  ...+.++.  ..-++.+|+..   .++.=-...++..+.+...-. -|+  .++..-.+.+++|
T Consensus        10 ~l~lP~~w~DrSvN--vf~~~~~g--t~~~sfvIsRd---~~~~g~~~~~y~~rql~~l~k~Lpg--y~~~~~~e~~v~~   80 (147)
T COG5435          10 TLELPAAWQDRSVN--VFVSGDNG--TSGFSFVISRD---PLEPGDTFPEYVQRQLALLRKQLPG--YELHHRREIEVGG   80 (147)
T ss_pred             eEcCcchhccceEE--EEEecCCC--cceeEEEEecC---CCCCCCcHHHHHHHHHHHHHhhCCC--eEEeeccccccCc
Confidence            68899999776541  12222222  33456666532   111101122333322222211 133  3455544566788


Q ss_pred             eeEEEEEEEEeCC--CCcc-eEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhccceee
Q 026701          175 KNYYTFEYILTSP--NYSS-ASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRIL  233 (235)
Q Consensus       175 ~~YY~~Ey~~~s~--~~~r-H~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFrv~  233 (235)
                      ..--..+|.+..+  ++++ +.+.++.-.++++-+++++++..-=++.++.+..++.||.+.
T Consensus        81 ~aa~~~~y~w~~~~~~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p~  142 (147)
T COG5435          81 AAAPLLDYQWTSPEGEQRRVQQRQVFIERGDTVLIFTLTTPGEFTPSQKKAWEQVIQSFVPN  142 (147)
T ss_pred             cccceeEEEeecCCCCCceEEEEEeecccCCeEEEEEecCCCCCCHHHHHHHHHHHHhcCCC
Confidence            7777777877664  4555 666665556788999999999999999999999999999863

>PRK11615 hypothetical protein; Provisional

Probab=96.77  E-value=0.26  Score=41.38  Aligned_cols=132  Identities=12%  Similarity=0.207  Sum_probs=84.8

Q ss_pred             CCceEEEcCCCceeeeec-C----ccceeeccccCcccEEEEEecCCCCCccccCChHHHHHHHHhhHh-cCCCCceEEE
Q 026701           92 IDGYSYVYPSDWTEFEFT-G----HDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVY-AAPNQVADIL  165 (235)
Q Consensus        92 ~~gysf~~P~~W~e~~~~-g----~d~~f~d~~~~~~nVsV~i~p~~~~si~d~Gspeeva~~l~~~~~-~~p~~~a~ll  165 (235)
                      +..++|.+|.|+.+.... |    ..-.|-|...   .=.|+|+..+..+ ++   .+..+.+|..+-- +.|+  ..++
T Consensus        47 dGKl~FtLPag~sdqsgk~Gtq~nn~~vYad~tg---~kavIVi~gD~~~-~~---Ld~la~rl~~qQr~rdp~--lqvv  117 (185)
T PRK11615         47 DGKLSFTLPADMSDQSGKLGTQANNMHVYADATG---QKAVIVILGDDTN-ED---LAVLAKRLEDQQRSRDPQ--LQVV  117 (185)
T ss_pred             ccEEEEEcCCccccccccccccccceEEEEcCCC---CEEEEEEeCCCCh-hh---HHHHHHHHHHHHHhhCcC--ceee
Confidence            468999999999654321 2    3356766432   2233333322111 11   3445555555432 2232  3466


Q ss_pred             EeeeeeeCCeeEEEEEEEEeCCCCcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhcccee
Q 026701          166 DMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRI  232 (235)
Q Consensus       166 ~a~~~~~dG~~YY~~Ey~~~s~~~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFrv  232 (235)
                      ..+..+++|++....+=+....+..--.-..++..|+||-+|.+..|.+.-.+....-+.|+++..+
T Consensus       118 snK~i~i~G~~~qQLDS~~t~~Gqk~~SSvvL~~v~~rl~tlQitlpA~nqqqaq~~ae~ii~tl~~  184 (185)
T PRK11615        118 TNKAIELKGHKLQQLDSIISAKGQTAYSSVVLGKVDNQLLTMQITLPADNQQQAQTTAENIINTLVI  184 (185)
T ss_pred             cceeEEECCeeeEEeeeeeecCCceEEEEEEEEeeCCeEEEEEEecCCCCHHHHHHHHHHHHhheec
Confidence            6666778999999999877544333344455667799999999999999999888888999888764

>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein []

Probab=95.30  E-value=0.46  Score=39.91  Aligned_cols=133  Identities=13%  Similarity=0.071  Sum_probs=77.2

Q ss_pred             ceEEEcCCCceeeeec---Cccceeeccc---cCcccEEEEEecCCCCCccccCChHHHHHHHHhhHhcCCCCceEEEEe
Q 026701           94 GYSYVYPSDWTEFEFT---GHDSGFKDRY---LQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDM  167 (235)
Q Consensus        94 gysf~~P~~W~e~~~~---g~d~~f~d~~---~~~~nVsV~i~p~~~~si~d~Gspeeva~~l~~~~~~~p~~~a~ll~a  167 (235)
                      .-++-.|.||+...-+   ++-....++.   +-..|+.|++....    .+| +|+|+++.--.....-||  .+-++.
T Consensus        32 ~v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~----G~~-Dp~e~l~~a~~d~~~l~g--~~~~~~  104 (175)
T PF10738_consen   32 TVSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLT----GDF-DPAEALEHAPADAQNLPG--FRELDG  104 (175)
T ss_pred             EEeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEecc----CCC-CHHHHHHhchhhHhhCcC--cccccC
Confidence            4667777888654322   2111111111   11246777766532    223 577776521112212233  234555


Q ss_pred             eeeeeCCeeEEEEEEEEeCCCCcceEEEEEEEE--CCe--EEEEEEEecchhhHHHHHHHHhhhccceee
Q 026701          168 QEKSVDGKNYYTFEYILTSPNYSSASIATIAIA--NGR--YYTLIVGANERRWKRVRNKLKVVADSFRIL  233 (235)
Q Consensus       168 ~~~~~dG~~YY~~Ey~~~s~~~~rH~l~~~tv~--~g~--LYtl~~~a~e~~W~k~~~~l~~vv~SFrv~  233 (235)
                      +..+.+|-+-+.+|-+.+..+..+|......|.  ++.  |-.|++++.+++=....+..+.|.+.|+|-
T Consensus       105 s~~~~~GfpS~~i~GtY~~~g~~~~~~~r~VV~~~~~~~Ylvqltvt~~~~qa~~~~~a~~aI~~g~~It  174 (175)
T PF10738_consen  105 SPSDFSGFPSSQIEGTYDKDGMRLHTSQRTVVIPGDDQRYLVQLTVTTTADQAVALADATEAIDEGFTIT  174 (175)
T ss_pred             CccccCCCceeEEEEEEeeCCEEeEeEEEEEEEeCCCcEEEEEEEeeccccchhhhhhHHHHHHcCCEec
Confidence            555678888888886665554445655444443  444  556688888888888899999999999984

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=94.42  E-value=2.2  Score=34.51  Aligned_cols=120  Identities=18%  Similarity=0.248  Sum_probs=56.4

Q ss_pred             cceeecCCceEEEcCCCceeeeecCccc-eeeccccCcccEEEEEecCCCCCccccCChHHHHHHHHhhHhcCCCCceEE
Q 026701           86 DAFVDRIDGYSYVYPSDWTEFEFTGHDS-GFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADI  164 (235)
Q Consensus        86 ~~y~D~~~gysf~~P~~W~e~~~~g~d~-~f~d~~~~~~nVsV~i~p~~~~si~d~Gspeeva~~l~~~~~~~p~~~a~l  164 (235)
                      +-|..|+.=|++.||.+|.|.+ .|.++ .|.++..=.+|.++..-...  +   -+-..+++..-+++-   ++  +++
T Consensus         2 kKfiSpg~WFS~~YP~~W~EfE-D~E~sflFYnp~~WTGNfRISayk~~--~---~~ygk~~i~~EL~en---~~--a~~   70 (153)
T PF12712_consen    2 KKFISPGAWFSMEYPADWNEFE-DGEGSFLFYNPDQWTGNFRISAYKGG--S---AQYGKECIRQELKEN---PS--AKL   70 (153)
T ss_dssp             EEEE-GGG-EEEEE-TT-EEE----TTEEEEE-SSS---EEEEEEEE----S---TTHHHHHHHHHHHH----TT---EE
T ss_pred             CcccCCCceEEEecCCCcchhc-cCCcceEEEChHHhcCceEEEEEecc--c---ccchHHHHHHHHHhC---CC--cce
Confidence            4578887789999999998887 45544 67788776678776544311  1   112233333222221   22  222


Q ss_pred             EE---------eeeeeeCCeeEEEEEEEEeCCCCcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhccceee
Q 026701          165 LD---------MQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRIL  233 (235)
Q Consensus       165 l~---------a~~~~~dG~~YY~~Ey~~~s~~~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFrv~  233 (235)
                      +.         ....+.+|. |    |+       .|...  +-.++..|.|..+.+-..=   ....+.|+.|..+.
T Consensus        71 vkvg~~~caYs~E~f~eeg~-~----Yt-------sH~Wv--tg~~~~sfeCSFTv~kg~~---~~~aE~iiasL~vR  131 (153)
T PF12712_consen   71 VKVGNWECAYSKEMFQEEGA-Y----YT-------SHLWV--TGEGDVSFECSFTVPKGES---VKEAEEIIASLEVR  131 (153)
T ss_dssp             EEETTEEEEEEEEEEEETTE-E----EE-------EEEEE--EEETTEEEEEEEEEETT------HHHHHHHHH-EE-
T ss_pred             EEeccEEEEEEhhhhhccCe-e----EE-------EEEEE--EecCceEEEEEEEccCCCC---cchHHHHHhhheeh
Confidence            22         222234442 1    22       25433  4578899999998875433   33345667776653

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

>COG4784 Putative Zn-dependent protease [General function prediction only]

Probab=91.66  E-value=1.3  Score=41.16  Aligned_cols=180  Identities=14%  Similarity=0.166  Sum_probs=84.9

Q ss_pred             eccccCCCcccccccccCCccceeeecCCCCcccccchhhHHHHHHHHHHhhcccCCCccccccccCccc---ceeecCC
Q 026701           17 KKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNYD---AFVDRID   93 (235)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~RR~~L~g~~a~~a~~~pa~~a~a~~~p~g~~---~y~D~~~   93 (235)
                      +-|..+|||..+|.....+...  . -   ....-+..+|.-+|.|+=         .-.|++..-+||.   .|.-++-
T Consensus       231 ldfl~sHPntpqRiqla~~hAR--q-~---g~~gvg~~gRd~fL~gid---------g~lyGDSp~eGyvRgq~FlH~~L  295 (479)
T COG4784         231 LDFLASHPNTPQRIQLARRHAR--Q-F---GAPGVGTRGRDSFLAGID---------GLLYGDSPQEGYVRGQTFLHPEL  295 (479)
T ss_pred             cchhhcCCCChHHHHHHHHHHH--h-h---CCCCCCcccHHHHHhccc---------CcccCCCcccceecccceecccc
Confidence            4566788888877532221110  0 0   111124456777776542         1134443224554   6777788


Q ss_pred             ceEEEcCCCceeeeecCccceeeccccCcccEEEEEecCCCCCccccCChHHHHHHHHhhHhcCCC-CceEEEEeeeeee
Q 026701           94 GYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPN-QVADILDMQEKSV  172 (235)
Q Consensus        94 gysf~~P~~W~e~~~~g~d~~f~d~~~~~~nVsV~i~p~~~~si~d~Gspeeva~~l~~~~~~~p~-~~a~ll~a~~~~~  172 (235)
                      |++|.||.||+-.....+...+.    +.+ +.+..-.+   ++..--++.+++..   ...  .+ +...|   +...+
T Consensus       296 g~tf~~P~Gf~IdN~~~Avlatg----~ge-~aIrfdgv---~~~s~~sltdyirs---gwv--~gl~~etv---kq~~i  359 (479)
T COG4784         296 GVTFDVPDGFKIDNSAEAVLATG----PGE-VAIRFDGV---SDDSRRSLTDYIRS---GWV--AGLDPETV---KQTTI  359 (479)
T ss_pred             ceEEecCCceEecCchHHhhccC----Ccc-eeEeeccc---cCccccCHHHHHHH---hhh--ccCChhhh---hhhcc
Confidence            99999999997654332222221    111 33322211   12222234444321   111  01 11111   11224


Q ss_pred             CCeeEEEEEEEEeCCCCcceEEEEEEE-ECCeEEEEEEEecchhhHHHHHHHHhhhccceee
Q 026701          173 DGKNYYTFEYILTSPNYSSASIATIAI-ANGRYYTLIVGANERRWKRVRNKLKVVADSFRIL  233 (235)
Q Consensus       173 dG~~YY~~Ey~~~s~~~~rH~l~~~tv-~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFrv~  233 (235)
                      ||.     |=.+.-....|-.+-++.+ .+++.|.+...+|-..-. .++....+..|||++
T Consensus       360 NG~-----~Aata~a~A~~w~fdvaVI~~g~rvyrfltavp~gs~~-l~~~a~sv~~SFR~l  415 (479)
T COG4784         360 NGL-----EAATARASADRWQFDVAVIRAGDRVYRFLTAVPKGSTA-LEPRANSVRRSFRPL  415 (479)
T ss_pred             CCc-----hhcccCCCcccccceEEEEEeCCEEEEEEEecccCcch-hhHHHHHHHhhcccC
Confidence            441     1111111122223333333 478999988877754433 455888999999975

>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP)

Probab=80.83  E-value=21  Score=32.09  Aligned_cols=21  Identities=33%  Similarity=0.762  Sum_probs=16.0

Q ss_pred             ceeecCCceEEEcCCCceeee
Q 026701           87 AFVDRIDGYSYVYPSDWTEFE  107 (235)
Q Consensus        87 ~y~D~~~gysf~~P~~W~e~~  107 (235)
                      ++.+...||+|.+|.||++-+
T Consensus       111 rvdn~~gGFS~vvP~GW~~Sd  131 (297)
T PF07174_consen  111 RVDNAAGGFSYVVPAGWVESD  131 (297)
T ss_pred             cccccccceEEeccCCccccc
Confidence            444556899999999997543

Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	235
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		1e-11
2lnj_A	170	Solution Structure Of Cyanobacterial Psbp (Cyanop)		2e-09
1v2b_A	177	Crystal Structure Of Psbp Protein In The Oxygen-Evo		2e-07
2vu4_A	190	Structure Of Psbp Protein From Spinacia Oleracea At		4e-06

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 9/155 (5%)
Query: 87  AFVDRIDGYSYVYPSDWTEFEFTGH-DSGFKDRYLQLQNVRVRF-IPTDKKDVHDLGPME 144
           A+VD  DGY ++YP  W + +     D  F D     +NV V        K + +LG  E
Sbjct: 10  AYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPE 69
Query: 145 EVVSNLARHVYAAP--NQVADILDMQEKSVDGKNYYTFEYILTSPN-----YXXXXXXXX 197
           EV   L R++ A     + + ++    +  D K YY  EY +T P               
Sbjct: 70  EVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSI 129
Query: 198 XXXNGRYYTLIVGANERRWKRVRNKLKVVADSFRI 232
               G+ YTL V A E RW +V ++ K +  SF +
Sbjct: 130 AVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFTV 164

>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From Synechocystis Sp. Pcc 6803 Length = 170

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 10/154 (6%)
Query: 88  FVDRIDGYSYVYPSDWTEFEFTGHDSG----FKDRYLQLQNVRVRF--IPTDKKDVHDLG 141
           + D  DGY ++YP+ W   +  G   G    F+D   + +N+ V    IP+DK  + DLG
Sbjct: 17  YSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKT-LTDLG 75
Query: 142 PMEEVVSNLARHVYAAP--NQVADILDMQEKSVDGKNYYTFEY-ILTSPNYXXXXXXXXX 198
              +V     + V  A   ++ A++++ + +  DG+ YYT EY +L   N          
Sbjct: 76  TATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVT 135
Query: 199 XXNGRYYTLIVGANERRWKRVRNKLKVVADSFRI 232
              G+  T  +   E RW  V++    VA SF +
Sbjct: 136 TNRGKLITFDLSTAEDRWDTVKSLFDTVASSFHV 169

>pdb|1V2B|A Chain A, Crystal Structure Of Psbp Protein In The Oxygen-Evolving Complex Of Photosystem Ii From Higher Plants Length = 177

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 22/162 (13%)
Query: 93  DGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN 149
           DG+    PS W    E E+ G    F+D +    NV V   PTDKK + D G  E+ +S 
Sbjct: 15  DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQ 74
Query: 150 ----LARHVYAAPNQ-----------VADILDMQEKSVDGKNYYTFEYILTSPNYXXXXX 194
               L R  Y+               +A++L+     V GK YY    +  + +      
Sbjct: 75  VDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGK 134
Query: 195 X---XXXXXNGRYYTLIVGANERRW-KRVRNKLKVVADSFRI 232
                    +G+ Y     A ++RW K  +  ++  A SF +
Sbjct: 135 HQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSL 176

>pdb|2VU4|A Chain A, Structure Of Psbp Protein From Spinacia Oleracea At 1.98 A Resolution Length = 190

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 22/162 (13%)
Query: 93  DGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN 149
           DG+  + PS W    E EF G    ++D +    N+ V   PTDKK + D G  E+ +S 
Sbjct: 28  DGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQ 87
Query: 150 ----LARHVYAAPNQ-----------VADILDMQEKSVDGKNYYTFEYILTSPNYXXXXX 194
               L +  Y                 A++L+     VDGK YY+   +  + +      
Sbjct: 88  VDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGK 147
Query: 195 X---XXXXXNGRYYTLIVGANERRW-KRVRNKLKVVADSFRI 232
                    +G+ Y     A ++RW K  +  ++    SF +
Sbjct: 148 HQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSV 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	2e-41
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	9e-38
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	2e-36
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	2e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score =  128 bits (323), Expect = 9e-38
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 9/160 (5%)

Query: 82  PKNYDAFVDRIDGYSYVYPSDWTEFEFTGH-DSGFKDRYLQLQNVRVRFIP-TDKKDVHD 139
                A+VD  DGY ++YP  W + +     D  F D     +NV V        K + +
Sbjct: 5   TSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEE 64

Query: 140 LGPMEEVVSNLARHVYAAPN--QVADILDMQEKSVDGKNYYTFEYILTSPNYSSAS---- 193
           LG  EEV   L R++ A     + + ++    +  D K YY  EY +T P   + +    
Sbjct: 65  LGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRH 124

Query: 194 -IATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRI 232
            +++IA++ G+ YTL V A E RW +V ++ K +  SF +
Sbjct: 125 NLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFTV 164

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score =  125 bits (314), Expect = 2e-36
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 82  PKNYDAFVDRIDGYSYVYPSDWTEF----EFTGHDSGFKDRYLQLQNVRVRFIPTD-KKD 136
             +   + D  DGY ++YP+ W          G D  F+D   + +N+ V        K 
Sbjct: 11  IASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKT 70

Query: 137 VHDLGPMEEVVSNLARHVYAAP--NQVADILDMQEKSVDGKNYYTFEY-ILTSPNYSSAS 193
           + DLG   +V     + V  A   ++ A++++ + +  DG+ YYT EY +L   N     
Sbjct: 71  LTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHD 130

Query: 194 IATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRI 232
           +A++    G+  T  +   E RW  V++    VA SF +
Sbjct: 131 LASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVASSFHV 169

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score =  123 bits (309), Expect = 2e-35
 Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 23/174 (13%)

Query: 82  PKNYDAFVD-RIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDV 137
           PK    F     DG+    PS W    E E+ G    F+D +    NV V   PTDKK +
Sbjct: 3   PKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSI 62

Query: 138 HDLGPMEEVVSN----LARHVYAAPNQV-----------ADILDMQEKSVDGKNYYTFEY 182
            D G  E+ +S     L R  Y+                A++L+     V GK YY    
Sbjct: 63  TDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSI 122

Query: 183 ILTSPNYSSA---SIATIAIANGRYYTLIVGANERRW-KRVRNKLKVVADSFRI 232
           +  + + +      + T  + +G+ Y     A ++RW K  +  ++  A SF +
Sbjct: 123 LTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSL 176

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 6e-07
 Identities = 42/235 (17%), Positives = 65/235 (27%), Gaps = 78/235 (33%)

Query: 9   NW-------VSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPED---------------I 46
           NW       ++T +   LNV  P E  +     S    F  P                 I
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VF--PPSAHIPTILLSLIWFDVI 400

Query: 47  SSDEE---NKSKRRLLLMGA---------GLLTANLLPANSLFAQ--------EIPKNY- 85
            SD     NK  +  L+             +     +   + +A          IPK + 
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 86  --DAFVDRIDGYSYVYPSD-WTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGP 142
             D     +D Y Y +        E     + F+  +L       RF+  ++K       
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-----RFL--EQK------- 506

Query: 143 MEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSASIATI 197
                    RH   A N    IL+  +     K Y    YI  +       +  I
Sbjct: 507 --------IRHDSTAWNASGSILNTLQ---QLKFYK--PYICDNDPKYERLVNAI 548

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	98.98
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	98.27

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=1.4e-39  Score=267.84  Aligned_cols=153  Identities=31%  Similarity=0.593  Sum_probs=142.1

Q ss_pred             ccCcccceeecCCceEEEcCCCceeeeec-CccceeeccccCcccEEEEEecCCC-CCccccCChHHHHHHHHhhHhcCC
Q 026701           81 IPKNYDAFVDRIDGYSYVYPSDWTEFEFT-GHDSGFKDRYLQLQNVRVRFIPTDK-KDVHDLGPMEEVVSNLARHVYAAP  158 (235)
Q Consensus        81 ~p~g~~~y~D~~~gysf~~P~~W~e~~~~-g~d~~f~d~~~~~~nVsV~i~p~~~-~si~d~Gspeeva~~l~~~~~~~p  158 (235)
                      .|+||++|.|+++||+|.||++|++..++ |++++|+|+.+..+||+|+|.|..+ .+|++||+|+++++.|+++.+++|
T Consensus         4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~~   83 (165)
T 2xb3_A            4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPS   83 (165)
T ss_dssp             --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSCT
T ss_pred             CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcCC
Confidence            47899999999999999999999998887 8999999999888999999999764 899999999999999999988777


Q ss_pred             --CCceEEEEeeeeeeCCeeEEEEEEEEeCCC-----CcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhccce
Q 026701          159 --NQVADILDMQEKSVDGKNYYTFEYILTSPN-----YSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFR  231 (235)
Q Consensus       159 --~~~a~ll~a~~~~~dG~~YY~~Ey~~~s~~-----~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFr  231 (235)
                        ++.++|+++.+++.+|++||+|||++++++     +.||.|+++++++|+||+|++|+||++|+++++.|++|++||+
T Consensus        84 ~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sape~~w~~~~~~l~~v~~SF~  163 (165)
T 2xb3_A           84 ESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFT  163 (165)
T ss_dssp             TSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEEEGGGHHHHHHHHHHHHHTCE
T ss_pred             CCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEEEEecCHHHhHHHHHHHHHHHhhEE
Confidence              478999999999999999999999999888     8999999999999999999999999999999999999999999


Q ss_pred             ee
Q 026701          232 IL  233 (235)
Q Consensus       232 v~  233 (235)
                      ++
T Consensus       164 v~  165 (165)
T 2xb3_A          164 VY  165 (165)
T ss_dssp             EC
T ss_pred             eC
Confidence            85

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=1.9e-38  Score=264.55  Aligned_cols=151  Identities=26%  Similarity=0.538  Sum_probs=127.9

Q ss_pred             ccCcccceeecCCceEEEcCCCcee---eeecCccceeeccccCcccEEEEEecCCCCCccccCChHHHH----HHHHhh
Q 026701           81 IPKNYDAFVDRIDGYSYVYPSDWTE---FEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVV----SNLARH  153 (235)
Q Consensus        81 ~p~g~~~y~D~~~gysf~~P~~W~e---~~~~g~d~~f~d~~~~~~nVsV~i~p~~~~si~d~Gspeeva----~~l~~~  153 (235)
                      .|.||+.|.  ++||+|.||.+|++   ..++|++++|+|+++..+||+|+|.|+++++|+|||+|++++    +.|+++
T Consensus         5 ~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~~   82 (177)
T 1v2b_A            5 TDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQ   82 (177)
T ss_dssp             --CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC---
T ss_pred             CCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHHH
Confidence            357999998  79999999999974   446699999999999999999999999889999999999965    455555


Q ss_pred             HhcC---------CC--CceEEEEeeeeeeCCeeEEEEEEEEeCCC---CcceEEEEEEEECCeEEEEEEEecchhhHHH
Q 026701          154 VYAA---------PN--QVADILDMQEKSVDGKNYYTFEYILTSPN---YSSASIATIAIANGRYYTLIVGANERRWKRV  219 (235)
Q Consensus       154 ~~~~---------p~--~~a~ll~a~~~~~dG~~YY~~Ey~~~s~~---~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~  219 (235)
                      .+++         |+  +.++|+++++++.||++||+|||.+++++   +.||+|+++++++|+||+|++|++|++|++.
T Consensus        83 ~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a~e~~W~k~  162 (177)
T 1v2b_A           83 AYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKG  162 (177)
T ss_dssp             ---------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCSTT
T ss_pred             hhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEECCEEEEEEEecCHHHhhhh
Confidence            5543         22  56899999999999999999999999887   7999999999999999999999999999995


Q ss_pred             -HHHHHhhhccceee
Q 026701          220 -RNKLKVVADSFRIL  233 (235)
Q Consensus       220 -~~~l~~vv~SFrv~  233 (235)
                       ++.|++|++||+|.
T Consensus       163 ~~~~l~~v~~SF~v~  177 (177)
T 1v2b_A          163 AKKFVENTATSFSLA  177 (177)
T ss_dssp             TTHHHHHHHHTCEEC
T ss_pred             HHHHHHHHHhheecC
Confidence             99999999999983

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=2.3e-40  Score=274.22  Aligned_cols=154  Identities=26%  Similarity=0.499  Sum_probs=144.5

Q ss_pred             cccCcccceeecCCceEEEcCCCceeeeec----CccceeeccccCcccEEEEEecCCC-CCccccCChHHHHHHHHhhH
Q 026701           80 EIPKNYDAFVDRIDGYSYVYPSDWTEFEFT----GHDSGFKDRYLQLQNVRVRFIPTDK-KDVHDLGPMEEVVSNLARHV  154 (235)
Q Consensus        80 ~~p~g~~~y~D~~~gysf~~P~~W~e~~~~----g~d~~f~d~~~~~~nVsV~i~p~~~-~si~d~Gspeeva~~l~~~~  154 (235)
                      +.|+||+.|.|+.+||+|.||++|++.+++    |.+++|+|+.+..+||+|+|+|.++ ++|+|||+|++++++|+++.
T Consensus         9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~   88 (170)
T 2lnj_A            9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTV   88 (170)
Confidence            357899999999999999999999988777    8999999999999999999999865 89999999999999999998


Q ss_pred             hcCC--CCceEEEEeeeeeeCCeeEEEEEEEEeCC-CCcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhccce
Q 026701          155 YAAP--NQVADILDMQEKSVDGKNYYTFEYILTSP-NYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFR  231 (235)
Q Consensus       155 ~~~p--~~~a~ll~a~~~~~dG~~YY~~Ey~~~s~-~~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFr  231 (235)
                      ++++  ++.++|+++.+++.||++||+|||+++++ ++.||.++++++++|+||+|++++||++|++.++.|++|++||+
T Consensus        89 ~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~ape~~w~~~~~~l~~v~~SF~  168 (170)
T 2lnj_A           89 NDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVASSFH  168 (170)
Confidence            8877  47899999999999999999999999988 79999999999999999999999999999999999999999999


Q ss_pred             ee
Q 026701          232 IL  233 (235)
Q Consensus       232 v~  233 (235)
                      |+
T Consensus       169 v~  170 (170)
T 2lnj_A          169 VY  170 (170)
Confidence            85

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=98.98  E-value=1.5e-08  Score=81.19  Aligned_cols=137  Identities=6%  Similarity=0.017  Sum_probs=93.5

Q ss_pred             ccceeecCCceEEEcCCCceeeeecCccceeeccccCc--ccEEEEEecCCCCCccccCChHHHHHHHHhhHh-cCCCCc
Q 026701           85 YDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQL--QNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVY-AAPNQV  161 (235)
Q Consensus        85 ~~~y~D~~~gysf~~P~~W~e~~~~g~d~~f~d~~~~~--~nVsV~i~p~~~~si~d~Gspeeva~~l~~~~~-~~p~~~  161 (235)
                      +..|.  .++++|.+|.+|+....   .+.+.....+.  -++.|...+.     .+=.+++...+.-++... .-++  
T Consensus         3 m~~y~--~~Egsl~lP~gw~D~t~---nv~~~~~~~~~g~~~lvIsR~~~-----~~~~~l~~~~~~q~~~l~~~l~~--   70 (148)
T 1tu1_A            3 MTLYR--LHEADLEIPDAWQDQSI---NIFKLPASGPAREASFVISRDAS-----QGDAPFADYVARQLENAEKQLPG--   70 (148)
T ss_dssp             EEEEE--CSSEEEEEETTSEECCB---EEEEECCBTTBCCEEEEEEEECC-----CTTSCHHHHHHHHHHHHHHHSTT--
T ss_pred             CceEE--ECCEEEeCCCCcEeeeE---EEEEcCCCCCCCceEEEEEeccC-----CCCCCHHHHHHHHHHHHHhhCcC--
Confidence            45666  78999999999985432   23332222221  2444443332     121345555543322221 1133  


Q ss_pred             eEEEEeeeeeeCCeeEEEEEEEEeCCCCcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhccceee
Q 026701          162 ADILDMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRIL  233 (235)
Q Consensus       162 a~ll~a~~~~~dG~~YY~~Ey~~~s~~~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFrv~  233 (235)
                      .+++.......+|.+-..|||++...++.+|.+..+.+.++++|+|+++++...|+..++.++.|++||++-
T Consensus        71 y~~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~~  142 (148)
T 1tu1_A           71 FKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVPR  142 (148)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEEC
T ss_pred             cEEeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHHHHHHHhcccC
Confidence            445554444568999999999999877888999999998779999999999999999999999999999963

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=98.27  E-value=7.6e-05  Score=60.63  Aligned_cols=132  Identities=11%  Similarity=0.104  Sum_probs=86.9

Q ss_pred             CceEEEcCCCceeeeecCccceee-ccc--cCcccEEEEEecCCCCCccccCChHHHHHHHHhhHhc-CCCCceEEEEee
Q 026701           93 DGYSYVYPSDWTEFEFTGHDSGFK-DRY--LQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYA-APNQVADILDMQ  168 (235)
Q Consensus        93 ~gysf~~P~~W~e~~~~g~d~~f~-d~~--~~~~nVsV~i~p~~~~si~d~Gspeeva~~l~~~~~~-~p~~~a~ll~a~  168 (235)
                      -++++..|.||+.....|.-..-. +..  +-..|+-|++......    +  .|+....| .+..+ -|+  .++++..
T Consensus        18 p~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~~----~--~e~~r~el-~~~~~~lp~--~~~~~r~   88 (161)
T 3lyd_A           18 TGFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAATG----A--LHNQRTEL-DQRATQLPD--YAERGRT   88 (161)
T ss_dssp             CEEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECTT----H--HHHHHHHH-HHHHTTSTT--CEEEEEE
T ss_pred             ceeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCcH----H--HHHHHHHH-HHHHhhCCC--cEeeccc
Confidence            579999999998876555432222 111  1235788877653211    2  24333333 22222 244  3455555


Q ss_pred             eeeeCCeeEEEEEEEEeCCCCcceE---EEEEEEECCeEEEE--EEEecchhhHHHHHHHHhhhccceee
Q 026701          169 EKSVDGKNYYTFEYILTSPNYSSAS---IATIAIANGRYYTL--IVGANERRWKRVRNKLKVVADSFRIL  233 (235)
Q Consensus       169 ~~~~dG~~YY~~Ey~~~s~~~~rH~---l~~~tv~~g~LYtl--~~~a~e~~W~k~~~~l~~vv~SFrv~  233 (235)
                      ..+.+|.+-+..||.+..++.+.+.   ..++...++..|.+  ++++.+.+-+.....++.|++||+|.
T Consensus        89 ~~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v~  158 (161)
T 3lyd_A           89 ETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDTFRLMHADLTVQ  158 (161)
T ss_dssp             EEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEE
T ss_pred             ccccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHHHHHHHhheeEec
Confidence            5578999999999999877777762   33333346666666  99999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	3e-32

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  113 bits (284), Expect = 3e-32
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 22/162 (13%)

Query: 93  DGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEE---- 145
           DG+    PS W    E E+ G    F+D +    NV V   PTDKK + D G  E+    
Sbjct: 9   DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQ 68

Query: 146 VVSNLARHVYAAPNQV-----------ADILDMQEKSVDGKNYYTFEYILTSPNYSSAS- 193
           V   L R  Y+                A++L+     V GK YY    +  + + +    
Sbjct: 69  VDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGK 128

Query: 194 --IATIAIANGRYYTLIVGANERRW-KRVRNKLKVVADSFRI 232
             + T  + +G+ Y     A ++RW K  +  ++  A SF +
Sbjct: 129 HQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSL 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	99.14

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=3e-36  Score=247.66  Aligned_cols=147  Identities=25%  Similarity=0.520  Sum_probs=127.9

Q ss_pred             cccceeecCCceEEEcCCCceee---eecCccceeeccccCcccEEEEEecCCCCCccccCChHHHHHHHHhhHhcC---
Q 026701           84 NYDAFVDRIDGYSYVYPSDWTEF---EFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAA---  157 (235)
Q Consensus        84 g~~~y~D~~~gysf~~P~~W~e~---~~~g~d~~f~d~~~~~~nVsV~i~p~~~~si~d~Gspeeva~~l~~~~~~~---  157 (235)
                      +|++|.|  |||+|.||++|.+.   ...|++++|+|+.++.+||+|+|.|+++.+|++||+|+++++.++..+...   
T Consensus         2 ~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~~   79 (171)
T d1v2ba_           2 DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYS   79 (171)
T ss_dssp             CEEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC------
T ss_pred             CcccccC--CCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHHHHHHhhhhhc
Confidence            6889996  89999999999643   456899999999999999999999999999999999999998776555321   


Q ss_pred             ------------CCCceEEEEeeeeeeCCeeEEEEEEEEeCCC---CcceEEEEEEEECCeEEEEEEEecchhhHH-HHH
Q 026701          158 ------------PNQVADILDMQEKSVDGKNYYTFEYILTSPN---YSSASIATIAIANGRYYTLIVGANERRWKR-VRN  221 (235)
Q Consensus       158 ------------p~~~a~ll~a~~~~~dG~~YY~~Ey~~~s~~---~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k-~~~  221 (235)
                                  .++.++|+++++++.||++||+|||.+++++   +.||+|+++++.+||||+|++|+||++|++ .++
T Consensus        80 ~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~grLYtl~~~~pe~~w~~~~~~  159 (171)
T d1v2ba_          80 GKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKK  159 (171)
T ss_dssp             ------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCSTTTTH
T ss_pred             ccccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEEEEEeCCEEEEEEEecCHHHhhhhhHH
Confidence                        1256789999999999999999999998764   689999999999999999999999999988 577


Q ss_pred             HHHhhhcccee
Q 026701          222 KLKVVADSFRI  232 (235)
Q Consensus       222 ~l~~vv~SFrv  232 (235)
                      .|++|++||+|
T Consensus       160 ~l~~~v~SF~v  170 (171)
T d1v2ba_         160 FVENTATSFSL  170 (171)
T ss_dssp             HHHHHHHTCEE
T ss_pred             HHHHHHhceEe
Confidence            89999999997

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.14  E-value=1.3e-09  Score=84.91  Aligned_cols=140  Identities=5%  Similarity=-0.007  Sum_probs=100.0

Q ss_pred             ccceeecCCceEEEcCCCceeeeecCccceeeccccC-cccEEEEEecCCCCCccccCChHHHHHHHHhhHhcCCCCceE
Q 026701           85 YDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQ-LQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVAD  163 (235)
Q Consensus        85 ~~~y~D~~~gysf~~P~~W~e~~~~g~d~~f~d~~~~-~~nVsV~i~p~~~~si~d~Gspeeva~~l~~~~~~~p~~~a~  163 (235)
                      +..|.  .+.=+|.+|.||++..+  ....+.+.... ..|+.|...+.     .+=.+++++.+.....+-.. ....+
T Consensus         3 ~~~Y~--~~Egs~~lP~gw~d~t~--ni~~~~~~~~~~~~~lvIsr~~l-----~~~~~l~~~~~~~~~~l~~~-l~~~~   72 (144)
T d1tu1a_           3 MTLYR--LHEADLEIPDAWQDQSI--NIFKLPASGPAREASFVISRDAS-----QGDAPFADYVARQLENAEKQ-LPGFK   72 (144)
T ss_dssp             EEEEE--CSSEEEEEETTSEECCB--EEEEECCBTTBCCEEEEEEEECC-----CTTSCHHHHHHHHHHHHHHH-STTCE
T ss_pred             CceeE--EcCEEEeCCCCceeCcc--eEEEecCCCCCcceEEEEEeecC-----CCCCCHHHHHHHHHHHHHhh-CCCcE
Confidence            45666  45559999999987643  22233333221 13455544432     22246666666544443211 12256


Q ss_pred             EEEeeeeeeCCeeEEEEEEEEeCCCCcceEEEEEEEECCeEEEEEEEecchhhHHHHHHHHhhhccceeee
Q 026701          164 ILDMQEKSVDGKNYYTFEYILTSPNYSSASIATIAIANGRYYTLIVGANERRWKRVRNKLKVVADSFRILD  234 (235)
Q Consensus       164 ll~a~~~~~dG~~YY~~Ey~~~s~~~~rH~l~~~tv~~g~LYtl~~~a~e~~W~k~~~~l~~vv~SFrv~~  234 (235)
                      +++....+.+|.+.+.+||++..++...|...++.+.++++|+|+++++...|+..++.++.+++||++.+
T Consensus        73 ~~~~~~~~l~g~pa~~~~~t~~~~~~~v~Q~q~~~~~~~~~~~lt~t~~~~~~~~~~~~~~~il~Sf~p~p  143 (144)
T d1tu1a_          73 LHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVPRP  143 (144)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEECC
T ss_pred             EEeeEecccCCCcEEEEEEEEeeCCEeEEEEEEEEEeCCCEEEEEEecCCcCCHHHHHHHHHHHHhCccCC
Confidence            77777777899999999999988878889999999999999999999999999999999999999999753