Citrus Sinensis ID: 026719

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHEHHHHccccccHHHHHHHHHHHHHHEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcc
Coil and Loop (DISEMBL)
MAALSLGLGiastaittvrttrrpartkfriscvqwdpegilgsaqtghIARLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK
Flexible Loop (DISEMBL)
maalslglgiastaittvrttrrpartkfriscvqwdpegilgsaqtghIARLEFKRRLEKDAEAREAFeqhvreeaerrralrqsrvlpdtAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK
Low Complexity Region (SEG)
MAALSLGLGIastaittvrttrrpartKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEKDAEAREAFeqhvreeaerrralrqsrvlPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK
Disordered region (IsUnstruct)
*****LGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEF***************************************EMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENI*****************
Disordered Region (DISOPRED)
********GIASTAITTVRTTRR**RTKFRISCVQWDPEGILGSAQTGHIARLE***************************************EEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFEL*****************IELEALQKALLEGTEAYDNMQAD**************KDVKATVCLTLLELVEQNKINRSLLTLL*****************FM**
Disordered Region (DISEMBL)
MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEKDAEAREA****************QSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQ*************
Disordered Region (DISPRO)
******GLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKS***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIExxxxxxxxxxxxxxxxxxxxxLITARKSLTKILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
147861738	242	hypothetical protein VITISV_040233 [Viti	0.957	0.925	0.742	1e-91
255537039	238	conserved hypothetical protein [Ricinus	0.970	0.953	0.739	3e-91
225426919	242	PREDICTED: uncharacterized protein LOC10	0.957	0.925	0.738	5e-91
356540394	242	PREDICTED: uncharacterized protein LOC10	0.965	0.933	0.690	3e-86
449506137	239	PREDICTED: uncharacterized LOC101214026	0.974	0.953	0.688	2e-83
449459698	239	PREDICTED: uncharacterized protein LOC10	0.974	0.953	0.679	2e-82
15221583	237	uncharacterized protein [Arabidopsis tha	0.965	0.953	0.662	9e-82
297837145	236	hypothetical protein ARALYDRAFT_475075 [	0.961	0.953	0.662	5e-81
224124972	213	predicted protein [Populus trichocarpa]	0.854	0.938	0.730	2e-79
357481941	251	hypothetical protein MTR_5g011990 [Medic	0.982	0.916	0.647	5e-78

>gi|147861738|emb|CAN83165.1| hypothetical protein VITISV_040233 [Vitis vinifera]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 173/233 (74%), Positives = 198/233 (84%), Gaps = 9/233 (3%)

Query: 7   GLGIASTAI-----TTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEK 61
            LGI+S AI     T  RT   P R + +ISCV WDPEG+ GS  TGHIARLEFKRRLEK
Sbjct: 3   ALGISSAAIGFNTITIFRTKSAPRRLRTKISCVGWDPEGLFGSPNTGHIARLEFKRRLEK 62

Query: 62  DAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQ 121
           DA AREAF++HV EE ERR+ALRQSRV+PDT EE+IEYFLDTEAQE EFEIAR+R RL++
Sbjct: 63  DAXAREAFQRHVLEEKERRQALRQSRVIPDTPEELIEYFLDTEAQEFEFEIARMRHRLDK 122

Query: 122 EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTK 181
           +FFSHL+ ELGQLRF+VSKT++MEDRLIELEALQKALLEGTEAYD MQADLITA++SLTK
Sbjct: 123 DFFSHLQSELGQLRFSVSKTEEMEDRLIELEALQKALLEGTEAYDKMQADLITAKESLTK 182

Query: 182 ILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 234
           ILTSKDVKA    TLLE+VE+N++NRSLL LLDENIA+AQ S+QKQ  AFMEK
Sbjct: 183 ILTSKDVKA----TLLEMVEKNELNRSLLALLDENIASAQSSEQKQAVAFMEK 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537039|ref|XP_002509586.1| conserved hypothetical protein [Ricinus communis] gi|223549485|gb|EEF50973.1| conserved hypothetical protein [Ricinus communis]

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 173/234 (73%), Positives = 201/234 (85%), Gaps = 7/234 (2%)

Query: 1   MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE 60
           MAAL+LG+   +T+IT    T    R+K RISC+ WDPEG+LG  QTGHIAR EF+RRLE
Sbjct: 1   MAALALGI---ATSITFNIRTLPITRSKPRISCIGWDPEGLLGPPQTGHIARREFQRRLE 57

Query: 61  KDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
           +DAEAREAFEQHVREE ERR+ LR SR +PDT  E++EYFLDTEAQE+EFEIAR+RPRLN
Sbjct: 58  RDAEAREAFEQHVREEKERRQNLRLSRDIPDTPAELVEYFLDTEAQEIEFEIARMRPRLN 117

Query: 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180
           QEFFSHL+FELGQLRFAVSKT+DMEDRLIELEALQKAL EGTEAYD MQ DLI A++SLT
Sbjct: 118 QEFFSHLRFELGQLRFAVSKTEDMEDRLIELEALQKALQEGTEAYDEMQTDLIKAKESLT 177

Query: 181 KILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 234
           K+LTSKDVKA    TLLE+VE++++NRSLL LLDENIA+AQ+S+QK  AAFMEK
Sbjct: 178 KVLTSKDVKA----TLLEMVEKSELNRSLLALLDENIASAQQSNQKDAAAFMEK 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426919|ref|XP_002264554.1| PREDICTED: uncharacterized protein LOC100245386 [Vitis vinifera] gi|296085090|emb|CBI28505.3| unnamed protein product [Vitis vinifera]

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 172/233 (73%), Positives = 198/233 (84%), Gaps = 9/233 (3%)

Query: 7   GLGIASTAI-----TTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEK 61
            LGI+S AI     T  RT   P R + +ISCV WDPEG+ GS  TGHIARLEFKRRLEK
Sbjct: 3   ALGISSAAIGFNTITIFRTKSAPRRLRTKISCVGWDPEGLFGSPNTGHIARLEFKRRLEK 62

Query: 62  DAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQ 121
           DA+AREAF++HV EE ERR+ALRQSRV+PDT EE+IEYFLDTEAQE EFEIAR+R RL++
Sbjct: 63  DADAREAFQRHVLEEKERRQALRQSRVIPDTPEELIEYFLDTEAQEFEFEIARMRHRLDK 122

Query: 122 EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTK 181
           +FFSHL+ E GQLRF+VSKT++MEDRLIELEALQKALLEGTEAYD MQADLITA++SLTK
Sbjct: 123 DFFSHLQSERGQLRFSVSKTEEMEDRLIELEALQKALLEGTEAYDKMQADLITAKESLTK 182

Query: 182 ILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 234
           ILTSKDVKA    TLLE+VE+N++NRSLL LLDENIA+AQ S+QKQ  AFMEK
Sbjct: 183 ILTSKDVKA----TLLEMVEKNELNRSLLALLDENIASAQSSEQKQAVAFMEK 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540394|ref|XP_003538674.1| PREDICTED: uncharacterized protein LOC100775621 [Glycine max]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 161/233 (69%), Positives = 193/233 (82%), Gaps = 7/233 (3%)

Query: 5   SLGLGIASTAITTVRTTRRPARTKF---RISCVQWDPEGILGSAQTGHIARLEFKRRLEK 61
           +L  GIA+T ++     RR +  K+   RI CV WDPEG+LG  QTGH+AR EFKRRLE+
Sbjct: 3   TLSFGIATTCLSAAADYRRRSNWKWSRPRIVCVGWDPEGVLGPPQTGHLARFEFKRRLER 62

Query: 62  DAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQ 121
           DA+AREAF++ VREE ERR++LRQSR LPDT +++IEYFLDTEAQE+EFEIAR+RPRLN+
Sbjct: 63  DADAREAFQRQVREEKERRQSLRQSRPLPDTPQDLIEYFLDTEAQEIEFEIARMRPRLNE 122

Query: 122 EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTK 181
           EFF+ LKFELGQLRFAV+KTQ MEDR IELEAL+KA+LEG EAYD MQ +L+ AR SLTK
Sbjct: 123 EFFAQLKFELGQLRFAVNKTQLMEDRQIELEALEKAILEGLEAYDKMQGELVKARASLTK 182

Query: 182 ILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 234
           ILTSKD KA    TLLE+VE+N+INRSLL LLDENIA+AQK +QKQ A +MEK
Sbjct: 183 ILTSKDAKA----TLLEMVEKNEINRSLLALLDENIASAQKGNQKQAAEYMEK 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506137|ref|XP_004162663.1| PREDICTED: uncharacterized LOC101214026 [Cucumis sativus]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 161/234 (68%), Positives = 187/234 (79%), Gaps = 6/234 (2%)

Query: 1   MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE 60
           MAALS G     T I    T+ R  R    I+CV WDPEG+ G  QTGHIAR EFKRRLE
Sbjct: 1   MAALSFGF--TPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLE 58

Query: 61  KDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
           KDAEAREAFE+HVREE ERR+ LR+SRV+P     +IEYFLDTEAQ++EFEIARLRPRLN
Sbjct: 59  KDAEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLN 118

Query: 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180
           +EFFS +K ELG+LRFAV+KT+ MEDR+IELEALQKAL EG EAYD MQ +L+ AR+ LT
Sbjct: 119 EEFFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLT 178

Query: 181 KILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 234
           KILTSKDVKA    TLL+++E+N++NRSLL LLDENIANAQ  +QKQ AAFMEK
Sbjct: 179 KILTSKDVKA----TLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEK 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459698|ref|XP_004147583.1| PREDICTED: uncharacterized protein LOC101214026 [Cucumis sativus]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 159/234 (67%), Positives = 185/234 (79%), Gaps = 6/234 (2%)

Query: 1   MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE 60
           MAALS G     T I    T+ R  R    I+CV WDPEG+ G  QTGHIAR EFKRRLE
Sbjct: 1   MAALSFGF--TPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLE 58

Query: 61  KDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
           KDAEAREAFE+HVREE ERR+ LR+SRV+P     +IEYFLDTEAQ++EFEIARLRPRLN
Sbjct: 59  KDAEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLN 118

Query: 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180
           +EFFS +K ELG+LRFAV+KT+ MEDR+IELEALQKAL EG EAY  MQ +L+  R+ LT
Sbjct: 119 EEFFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYSKMQRELVKVREGLT 178

Query: 181 KILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 234
           KILTSKDVKA    TLL+++E+N++NRSLL LLDENIANAQ  +QKQ AAFMEK
Sbjct: 179 KILTSKDVKA----TLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEK 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221583|ref|NP_176466.1| uncharacterized protein [Arabidopsis thaliana] gi|18252921|gb|AAL62387.1| unknown protein [Arabidopsis thaliana] gi|23197936|gb|AAN15495.1| unknown protein [Arabidopsis thaliana] gi|332195882|gb|AEE34003.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 155/234 (66%), Positives = 191/234 (81%), Gaps = 8/234 (3%)

Query: 1   MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE 60
           MA LS G+  A+T   TVRT  R    + +I+C +WDP+G+LG AQTGHIARLEFKRRLE
Sbjct: 1   MATLSFGIAAAAT---TVRTIPRFNSRRSKITC-EWDPKGVLGPAQTGHIARLEFKRRLE 56

Query: 61  KDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
           +D+EAREAF++ +REE ERR+ALRQSRV+PDTA E+IEYFLDTEAQE+E+EIARLR RLN
Sbjct: 57  RDSEAREAFQKQLREEKERRQALRQSRVVPDTAAELIEYFLDTEAQEIEYEIARLRGRLN 116

Query: 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180
            EFF+ ++ E+GQ+RFAV+KT D+EDRLIELE LQKAL EG EAYD MQ +L+TA  SLT
Sbjct: 117 DEFFAQIRLEIGQIRFAVTKTADIEDRLIELETLQKALEEGIEAYDKMQNELMTATNSLT 176

Query: 181 KILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 234
           K+LTS D+K     TLL++VE+N+INRSLL LLDENIANA K +QK+   +MEK
Sbjct: 177 KLLTSTDIKT----TLLDMVEKNQINRSLLALLDENIANAYKGNQKEAGDYMEK 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837145|ref|XP_002886454.1| hypothetical protein ARALYDRAFT_475075 [Arabidopsis lyrata subsp. lyrata] gi|297332295|gb|EFH62713.1| hypothetical protein ARALYDRAFT_475075 [Arabidopsis lyrata subsp. lyrata]

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 155/234 (66%), Positives = 190/234 (81%), Gaps = 9/234 (3%)

Query: 1   MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE 60
           MA LS G+  A    TTVRT  R    + +ISC +WDP+G+LG  QTGHIARLEFKRRLE
Sbjct: 1   MATLSFGIAAA----TTVRTIPRFNTRRSKISC-EWDPKGVLGPPQTGHIARLEFKRRLE 55

Query: 61  KDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
           +D+EAREAF++ +REE ERR+ALRQSRV+PDTA E+IEYFLDTEAQE+E+EIARLR RLN
Sbjct: 56  RDSEAREAFQKQLREEKERRQALRQSRVVPDTAAELIEYFLDTEAQEIEYEIARLRGRLN 115

Query: 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180
            EFF+ ++ E+GQ+RFAV+KT ++EDRLIELE+LQKAL EG EAYD MQ +L+TA  SLT
Sbjct: 116 DEFFAQIRLEIGQIRFAVTKTAEIEDRLIELESLQKALEEGIEAYDKMQNELMTATNSLT 175

Query: 181 KILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 234
           KILTS D+K     TLL++VE+N+INRSLL LLDENIANA K +QK+   +MEK
Sbjct: 176 KILTSTDIKT----TLLDMVEKNEINRSLLALLDENIANAYKGNQKEAGDYMEK 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124972|ref|XP_002329859.1| predicted protein [Populus trichocarpa] gi|222871096|gb|EEF08227.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 152/208 (73%), Positives = 173/208 (83%), Gaps = 8/208 (3%)

Query: 18  VRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEKDAEAREAFEQHVREEA 77
            RT  +P R    ISCV+WDPEG+ G  QTGH+AR E  RRLEKDAE REA E   REE 
Sbjct: 9   TRTNHKPCR----ISCVKWDPEGLYGPPQTGHLARREINRRLEKDAEFREALEMQAREEK 64

Query: 78  ERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFA 137
           +RR ALRQSRV+PDT+E++IEYFLDTEAQE+EFEIARLR RLN EFFS L+FELGQLRFA
Sbjct: 65  QRRHALRQSRVIPDTSEKLIEYFLDTEAQEIEFEIARLRQRLNHEFFSQLQFELGQLRFA 124

Query: 138 VSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATVCLTLL 197
           VSKT++MEDRLIELEALQKAL EGTEAYD MQ +L+ A+KSLTKILTSKDVKA    TLL
Sbjct: 125 VSKTEEMEDRLIELEALQKALKEGTEAYDKMQGELVKAKKSLTKILTSKDVKA----TLL 180

Query: 198 ELVEQNKINRSLLTLLDENIANAQKSDQ 225
           E+VEQN++NRSLLTLLDENIA+A +  Q
Sbjct: 181 EMVEQNELNRSLLTLLDENIASANQGKQ 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481941|ref|XP_003611256.1| hypothetical protein MTR_5g011990 [Medicago truncatula] gi|355512591|gb|AES94214.1| hypothetical protein MTR_5g011990 [Medicago truncatula]

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 158/244 (64%), Positives = 189/244 (77%), Gaps = 14/244 (5%)

Query: 1   MAALSLGLGIAS-TAITTVRT-TRRPARTKFRISCV--------QWDPEGILGSAQTGHI 50
           MA L+ GL   +  A +  RT T+  +R K  I C+         WDPEG+LG   TGH+
Sbjct: 1   MATLNFGLATTNLNATSGFRTRTKSWSRGKSTIVCIGGGPIGPLDWDPEGVLGRPNTGHL 60

Query: 51  ARLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEF 110
           ARLEFKRRLEKD++AREAFE+ VREE ERRRALR SR +PDT +++IEY LDTEAQE+EF
Sbjct: 61  ARLEFKRRLEKDSDAREAFERQVREEKERRRALRDSRDVPDTPQDLIEYLLDTEAQEIEF 120

Query: 111 EIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQA 170
           EIAR+RPRLN EF   LK ELGQLRFAV+KTQ  EDRL ELEAL+KA+ EGT+AYD MQA
Sbjct: 121 EIARMRPRLNDEFILALKSELGQLRFAVNKTQLTEDRLTELEALEKAIQEGTDAYDKMQA 180

Query: 171 DLITARKSLTKILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAA 230
            LI A+++LTKILTSKDVKA    TLLELVE+N+INRSLLTLLDENI++A  ++QKQ A 
Sbjct: 181 QLIKAKENLTKILTSKDVKA----TLLELVERNEINRSLLTLLDENISSAHGANQKQAAE 236

Query: 231 FMEK 234
           +MEK
Sbjct: 237 YMEK 240

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
TAIR|locus:2026247	237	AT1G62780 "AT1G62780" [Arabido	0.965	0.953	0.576	2e-63

TAIR|locus:2026247 AT1G62780 "AT1G62780" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 135/234 (57%), Positives = 165/234 (70%)

Query:     1 MAALSLGLGIXXXXXXXXXXXXXXXXXKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE 60
             MA LS G+                   + +I+C +WDP+G+LG AQTGHIARLEFKRRLE
Sbjct:     1 MATLSFGIA---AAATTVRTIPRFNSRRSKITC-EWDPKGVLGPAQTGHIARLEFKRRLE 56

Query:    61 KDAEAREAFXXXXXXXXXXXXXXXXXXXXPDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
             +D+EAREAF                    PDTA E+IEYFLDTEAQE+E+EIARLR RLN
Sbjct:    57 RDSEAREAFQKQLREEKERRQALRQSRVVPDTAAELIEYFLDTEAQEIEYEIARLRGRLN 116

Query:   121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180
              EFF+ ++ E+GQ+RFAV+KT D+EDRLIELE LQKAL EG EAYD MQ +L+TA  SLT
Sbjct:   117 DEFFAQIRLEIGQIRFAVTKTADIEDRLIELETLQKALEEGIEAYDKMQNELMTATNSLT 176

Query:   181 KILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 234
             K+LTS D+K T    LL++VE+N+INRSLL LLDENIANA K +QK+   +MEK
Sbjct:   177 KLLTSTDIKTT----LLDMVEKNQINRSLLALLDENIANAYKGNQKEAGDYMEK 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.356    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      234       197   0.00082  111 3  10 22  0.46    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  195 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.86u 0.14s 27.00t   Elapsed:  00:00:01
  Total cpu time:  26.86u 0.14s 27.00t   Elapsed:  00:00:01
  Start:  Sat May 11 03:05:25 2013   End:  Sat May 11 03:05:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007279001 SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (242 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	234
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 29/228 (12%), Positives = 72/228 (31%), Gaps = 69/228 (30%)

Query: 33  CVQW------DPEGILGSAQTGHIARLEFKRRLEKDAEAREAFEQH-----VREEAERRR 81
            + W      D   ++         +L     +EK  +             ++ + E   
Sbjct: 393 SLIWFDVIKSDVMVVV--------NKLHKYSLVEKQPK-ESTISIPSIYLELKVKLENEY 443

Query: 82  ALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHL-----KFELGQ--- 133
           AL +S         +++++   +  + +     + P L+Q F+SH+       E  +   
Sbjct: 444 ALHRS---------IVDHYNIPKTFDSD---DLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 134 --------LRF----------AVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLIT- 174
                    RF          A + +  + + L +L+  +  + +    Y+ +   ++  
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 175 ARKSLTKILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQK 222
             K    ++ SK         LL +    +       + +E     Q+
Sbjct: 552 LPKIEENLICSK------YTDLLRIALMAEDE----AIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 28/149 (18%)

Query: 29  FRISCVQWDPEGILGSAQTGHIARLEFK------RRLEKDAEAREAFEQHVREEAERRRA 82
           F     Q+  + IL   +   +   + K      + +    E                  
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS----GT 64

Query: 83  LRQSRVLPDTAEEMIEYFL-DTEAQELEFEIARLR-----PRLNQEFFSHLKFEL---GQ 133
           LR    L    EEM++ F+ +      +F ++ ++     P +    +   +  L    Q
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 134 L--RFAVSKTQDMEDRLIELEALQKALLE 160
           +  ++ VS       RL     L++ALLE
Sbjct: 125 VFAKYNVS-------RLQPYLKLRQALLE 146

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 45/308 (14%), Positives = 92/308 (29%), Gaps = 103/308 (33%)

Query: 1   MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQW-------DPEGIL----------- 42
           +     G G    A+    + +   +  F+I    W        PE +L           
Sbjct: 158 VL----GSGKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQID 210

Query: 43  --GSAQTGHIARL--------EFKRRLEK---------------DAEAREAFEQHVR--- 74
              ++++ H + +           RRL K               +A+A  AF    +   
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 75  -----EEAERRRALRQSRVL---------PDTAEEMIEYFLDTEAQELEFEI-------- 112
                +  +   A   + +          PD  + ++  +LD   Q+L  E+        
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 113 ----ARLRPRLNQ-EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDN 167
                 +R  L   + + H+  +       ++   +       L  L+ A     + +D 
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCD------KLTTIIES-----SLNVLEPAEYR--KMFDR 377

Query: 168 M---QADL-ITARKSLTKI---LTSKDVKATVC-LTLLELVEQNKINRSLLTLLDENIAN 219
           +        I     L+ I   +   DV   V  L    LVE+     S +++    +  
Sbjct: 378 LSVFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLEL 435

Query: 220 AQKSDQKQ 227
             K + + 
Sbjct: 436 KVKLENEY 443

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00