Citrus Sinensis ID: 026745

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MQRKQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHcccccccccEEEEEEEEcccccEEEEEEcccccccccHHHHHHHHccccccccccccEEEcccccEEEEEEcccccHHHHHHHHHHcccccccccccccccccccccccEEEEEEccccHHHHHHHHHHcccccccccccEEEccccccccHHHHHHHHHHHHHHcccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHccccccccEEEEEEEEEcccEEEEEEEEEccHHHHHHHHHHHHHHcccEEccccccHHHEEEEEEEEEEHHHccHHHHHHHHHHHcccEEEEcccccccHccccccccEEEEEcHHHHHHHHHHHHHccccccHccEEEEccccEEEccHHHHHHHHHHHHHHHccccHHHHHHccc
Coil and Loop (DISEMBL)
mqrkqscirgwgrkSYLRnvkkggpnptsNTVLAAVLEKAkeldvpkdIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKdcggkmadpgsvmfKFRRARVVnikftdadkDQLLDIALDagaedvieppvneddtdedrAERYYKVVSTSDNYTDITTKLReagipfetdngsellpittiEVDDEAMELNKELIAKLLelddvdavytdqi
Flexible Loop (DISEMBL)
mqrkqscirgwgrksylrnvkkggpnptsNTVLAAVLekakeldvpkdiVERNIkrasekgqeaFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVkdcggkmadpgsvmfkfRRARVVNIKFTDADKDQLLDIALdagaedvieppvneddtdedrAERYYkvvstsdnytdiTTKLReagipfetdngsellpITTIEVDDEAMELNKELIakllelddvdaVYTDQI
Low Complexity Region (SEG)
MQRKQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI
Disordered region (IsUnstruct)
*******IRGWGRKSYL**************VLAAVLEKAKELDVPKDIVE**********QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG*********************YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY****
Disordered Region (DISOPRED)
**RKQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ*
Disordered Region (DISEMBL)
*********GWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI
Disordered Region (DISPRO)
*QRKQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDD*DEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQRKQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	234	2.2.26 [Sep-21-2011]
O82314	331	Probable transcriptional	yes	no	0.914	0.646	0.817	3e-92
Q9PJT5	238	Probable transcriptional	yes	no	0.884	0.869	0.328	3e-28
Q253C8	238	Probable transcriptional	yes	no	0.884	0.869	0.328	1e-27
Q9Z7Y0	238	Probable transcriptional	yes	no	0.884	0.869	0.333	2e-27
B0B830	238	Probable transcriptional	yes	no	0.884	0.869	0.324	2e-27
B0BC95	238	Probable transcriptional	yes	no	0.884	0.869	0.324	2e-27
Q3KLP1	238	Probable transcriptional	yes	no	0.884	0.869	0.324	2e-27
Q824H7	238	Probable transcriptional	yes	no	0.884	0.869	0.333	3e-27
O84463	238	Probable transcriptional	yes	no	0.884	0.869	0.319	5e-27
Q5L6U7	238	Probable transcriptional	yes	no	0.884	0.869	0.324	8e-27

>sp|O82314|U082_ARATH Probable transcriptional regulatory protein At2g25830 OS=Arabidopsis thaliana GN=At2g25830 PE=2 SV=2

 Score =  337 bits (865), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 175/214 (81%), Positives = 194/214 (90%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
           VKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGGVS
Sbjct: 117 VKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGGVS 176

Query: 80  IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
           +VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL IA
Sbjct: 177 MVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLIIA 236

Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
           LDAGAEDVIEPP  EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSELLP
Sbjct: 237 LDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSELLP 296

Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
           +TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct: 297 LTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 330

Arabidopsis thaliana (taxid: 3702)

>sp|Q9PJT5|Y742_CHLMU Probable transcriptional regulatory protein TC_0742 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=TC_0742 PE=3 SV=1

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 12/219 (5%)

Query: 14  KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
           K  +  VK GGP+P SN  L  +++KAK+ ++P + +ERN+K+AS   Q+ + E  YE+Y
Sbjct: 30  KELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKKASSADQKNYEEVTYELY 89

Query: 74  GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
           G+GGV I+VE +TD   R+ + +R  V   GG + +PGSV++ F R     +  +  D+ 
Sbjct: 90  GFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYNFSRKGACYVPKSSIDEA 149

Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
            LL   +D G ED+       D  DE+    ++ V+    +   +   L   G+   ++ 
Sbjct: 150 SLLTHVIDCGGEDL-------DSEDEE----FFLVLCEPTDLASVKEALLAKGVTC-SEE 197

Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
               +P+  ++ D+EA + N  LI  L  +DDVD VY +
Sbjct: 198 KMIYVPLRLVDCDEEAGKSNLALIEWLENIDDVDDVYHN 236

Chlamydia muridarum (strain MoPn / Nigg) (taxid: 243161)

>sp|Q253C8|Y838_CHLFF Probable transcriptional regulatory protein CF0838 OS=Chlamydophila felis (strain Fe/C-56) GN=CF0838 PE=3 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 122/219 (55%), Gaps = 12/219 (5%)

Query: 14  KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
           K  +  VK GGP+P +N  L  +++KAK+ ++P + +ERN+K+AS   Q+ F +  YE+Y
Sbjct: 30  KELISAVKMGGPDPKTNARLRVIIQKAKDQNIPSENIERNLKKASSADQKNFEDVTYELY 89

Query: 74  GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
           GYGGV I+VE +TD   R+ + +R  V   GG + +PGSV++ F R     +     D+ 
Sbjct: 90  GYGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYNFSRKGACYVPKNSIDEA 149

Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
            LL   ++ GAED+       D+ DE+    ++ V+    + + +  +L   G+   T+ 
Sbjct: 150 ALLSHVIEVGAEDL-------DNDDEE----HFVVLCDPVDLSSVKEQLVALGVTC-TEE 197

Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
               +P+  ++ D++  E N  LI  L ++DDVD VY +
Sbjct: 198 KLIYVPLRVVDCDEKDGEANLALIEWLEKIDDVDEVYHN 236

Chlamydophila felis (strain Fe/C-56) (taxid: 264202)

>sp|Q9Z7Y0|Y573_CHLPN Probable transcriptional regulatory protein CPn_0573/CP_0176/CPj0573/CpB0595 OS=Chlamydia pneumoniae GN=CPn_0573 PE=3 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 12/219 (5%)

Query: 14  KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
           K  +  VK GG +P SN  L  V++KAKE ++P + +ERN+K+A+   Q+ F E  YE+Y
Sbjct: 30  KELISAVKLGGADPKSNARLRMVIQKAKENNIPNENIERNLKKATSAEQKNFEEVTYELY 89

Query: 74  GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
           G+GGV I+VE +TD   R+ + +R  +   GG + +PGSV++ F R     +  +  D++
Sbjct: 90  GHGGVGIIVEAMTDNKNRTASDMRIAINKRGGSLVEPGSVLYNFARKGACTVAKSSIDEE 149

Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
            +   A++AGAED+        DT++   E  + V+        +  KL   G     D 
Sbjct: 150 VIFSYAIEAGAEDL--------DTED---EENFLVICAPSELASVKEKLISQGATCSEDR 198

Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
               LP+  ++ D++  E N  LI  L +++DVD VY +
Sbjct: 199 LI-YLPLRLVDCDEKDGEANLALIDWLEQIEDVDDVYHN 236

Chlamydia pneumoniae (taxid: 83558)

>sp|B0B830|Y717_CHLT2 Probable transcriptional regulatory protein CTL0717 OS=Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) GN=CTL0717 PE=3 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 12/219 (5%)

Query: 14  KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
           K  +  VK GGP+P SN  L  +++KAK+ ++P + +ERN+K+AS   Q+ + E  YE+Y
Sbjct: 30  KELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKKASSADQKNYEEVTYELY 89

Query: 74  GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
           G+GGV I+VE +TD   R+ + +R  V   GG + +PGSV++ F R     +     D+ 
Sbjct: 90  GFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYNFSRKGACYVPKHSIDEA 149

Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
            LL   +D G ED+        D+D+   E ++ V+    +   +   L   G+   ++ 
Sbjct: 150 SLLTHVIDCGGEDL--------DSDD---EEFFLVLCEPTDLASVKEALLAKGVTC-SEE 197

Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
               +P+  ++ D+E  + N  LI  L  +DDVD VY +
Sbjct: 198 RLIYVPLRLVDCDEETGKSNLALIEWLENIDDVDDVYHN 236

Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) (taxid: 471472)

>sp|B0BC95|Y713_CHLTB Probable transcriptional regulatory protein CTLon_0713 OS=Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) GN=CTLon_0713 PE=3 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 12/219 (5%)

Query: 14  KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
           K  +  VK GGP+P SN  L  +++KAK+ ++P + +ERN+K+AS   Q+ + E  YE+Y
Sbjct: 30  KELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKKASSADQKNYEEVTYELY 89

Query: 74  GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
           G+GGV I+VE +TD   R+ + +R  V   GG + +PGSV++ F R     +     D+ 
Sbjct: 90  GFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYNFSRKGACYVPKHSIDEA 149

Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
            LL   +D G ED+        D+D+   E ++ V+    +   +   L   G+   ++ 
Sbjct: 150 SLLTHVIDCGGEDL--------DSDD---EEFFLVLCEPTDLASVKEALLAKGVTC-SEE 197

Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
               +P+  ++ D+E  + N  LI  L  +DDVD VY +
Sbjct: 198 RLIYVPLRLVDCDEETGKSNLALIEWLENIDDVDDVYHN 236

Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) (taxid: 471473)

>sp|Q3KLP1|Y499_CHLTA Probable transcriptional regulatory protein CTA_0499 OS=Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) GN=CTA_0499 PE=3 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 12/219 (5%)

Query: 14  KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
           K  +  VK GGP+P SN  L  +++KAK+ ++P + +ERN+K+AS   Q+ + E  YE+Y
Sbjct: 30  KELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKKASSADQKNYEEVTYELY 89

Query: 74  GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
           G+GGV I+VE +TD   R+ + +R  V   GG + +PGSV++ F R     +     D+ 
Sbjct: 90  GFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYNFSRKGACYVPKHSIDEA 149

Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
            LL   +D G ED+        D+D+   E ++ V+    +   +   L   G+   ++ 
Sbjct: 150 SLLTHVIDCGGEDL--------DSDD---EEFFLVLCEPTDLASVKEALLAKGVTC-SEE 197

Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
               +P+  ++ D+E  + N  LI  L  +DDVD VY +
Sbjct: 198 RLIYVPLRLVDCDEETGKSNLALIEWLENIDDVDDVYHN 236

Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) (taxid: 315277)

>sp|Q824H7|Y169_CHLCV Probable transcriptional regulatory protein CCA_00169 OS=Chlamydophila caviae (strain GPIC) GN=CCA_00169 PE=3 SV=1

 Score =  121 bits (304), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 120/219 (54%), Gaps = 12/219 (5%)

Query: 14  KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
           K  +  VK GGP+P +N  L  V++KAK+ ++P + +ERN+K+A+   Q+ F +  YE+Y
Sbjct: 30  KELMAAVKMGGPDPKTNARLRVVIQKAKDQNIPNENIERNLKKATSADQKNFEDVTYELY 89

Query: 74  GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
           G+GGV I+VE +TD   R+ + +R  V   GG + +PGSV++ F R     I  +  D+ 
Sbjct: 90  GFGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYNFARKGACYISKSSIDEA 149

Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
            LL   +D GAED+       D+ DE+     + V+        +  KL   G+   ++ 
Sbjct: 150 TLLSHVIDVGAEDL-------DNDDEEN----FIVLCDPVELASVKEKLVALGVTC-SEE 197

Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
               +P+  ++ D++  E N  LI  L ++DDVD VY +
Sbjct: 198 KLIYVPLRLVDCDEKDGEANLALIEWLEQIDDVDEVYHN 236

Chlamydophila caviae (strain GPIC) (taxid: 227941)

>sp|O84463|Y457_CHLTR Probable transcriptional regulatory protein CT_457 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_457 PE=3 SV=1

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 12/219 (5%)

Query: 14  KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
           K  +  VK GGP+P SN  L  +++KAK+ ++P + +ERN+K+AS   Q+ + E  YE+Y
Sbjct: 30  KELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKKASSADQKNYEEVTYELY 89

Query: 74  GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
           G+GGV I+VE +TD   R+ + +R  V   GG + +PGSV++ F R     +     D+ 
Sbjct: 90  GFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYNFSRKGACYVPKHSIDEA 149

Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
            LL   +D G ED+        D+D+   E ++ V+    +   +   L   G+   ++ 
Sbjct: 150 SLLTHMIDCGGEDL--------DSDD---EEFFLVLCEPTDLASVKEALLAKGVTC-SEE 197

Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
               +P+  ++ D+E  + N  LI  L  ++DVD VY +
Sbjct: 198 RLIYVPLRLVDCDEETGKSNLALIEWLENINDVDDVYHN 236

Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561)

>sp|Q5L6U7|Y166_CHLAB Probable transcriptional regulatory protein CAB166 OS=Chlamydophila abortus (strain S26/3) GN=CAB166 PE=3 SV=1

 Score =  120 bits (301), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 119/219 (54%), Gaps = 12/219 (5%)

Query: 14  KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
           K  +  VK GGP+P +N  L  +++KAK+ ++P + +ERN+K+A+   Q+ F    YE+Y
Sbjct: 30  KELMAAVKMGGPDPKTNARLRMIIQKAKDQNIPNENIERNLKKATSADQKNFENVTYELY 89

Query: 74  GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
           G+GGV I+VE +TD   R+ + +R  V   GG + +PGSV++ F R     +  +  D+ 
Sbjct: 90  GHGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYNFVRKGACYVPKSSIDEA 149

Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
            LL   +D GAED+        D D+D    ++ V+        +  KL   G+   ++ 
Sbjct: 150 VLLPHVIDVGAEDL--------DNDDD---EHFLVLCDPVELASVKEKLTALGVAC-SEE 197

Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
               +P+  ++ D++  E N  LI  L ++DDVD VY +
Sbjct: 198 KLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVYHN 236

Chlamydophila abortus (strain S26/3) (taxid: 218497)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
255550912	311	conserved hypothetical protein [Ricinus	0.940	0.707	0.836	1e-100
225429934	319	PREDICTED: UPF0082 protein At2g25830 [Vi	0.940	0.689	0.790	1e-96
224089014	292	predicted protein [Populus trichocarpa]	0.940	0.753	0.8	1e-93
297825653	327	hypothetical protein ARALYDRAFT_320374 [	0.914	0.654	0.827	1e-91
356515613	306	PREDICTED: UPF0082 protein At2g25830-lik	0.914	0.699	0.774	4e-91
356515611	295	PREDICTED: UPF0082 protein At2g25830-lik	0.901	0.715	0.799	8e-91
18400953	331	YebC-related protein [Arabidopsis thalia	0.914	0.646	0.817	2e-90
15810383	330	unknown protein [Arabidopsis thaliana] g	0.914	0.648	0.817	2e-90
357466655	346	hypothetical protein MTR_3g109620 [Medic	0.914	0.618	0.719	2e-89
449461317	320	PREDICTED: probable transcriptional regu	0.914	0.668	0.747	2e-88

>gi|255550912|ref|XP_002516504.1| conserved hypothetical protein [Ricinus communis] gi|223544324|gb|EEF45845.1| conserved hypothetical protein [Ricinus communis]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/220 (83%), Positives = 203/220 (92%)

Query: 14  KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
           K  +  VKKGGP+P SNTVLAA+LEKAKELDVPKDI+ERNIKRAS+KGQEA+IEK+YEVY
Sbjct: 91  KEVVSAVKKGGPSPISNTVLAALLEKAKELDVPKDILERNIKRASDKGQEAYIEKIYEVY 150

Query: 74  GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
           G+GGVSIVVEVLTDKI RSVAAVREVVKD GGKMADPGSVMFKF+R RVVNIK T+ADKD
Sbjct: 151 GFGGVSIVVEVLTDKINRSVAAVREVVKDYGGKMADPGSVMFKFKRVRVVNIKVTEADKD 210

Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
           QLL IALDAGAEDVIEPP+ EDD DED++E YYKVVS+S+NY +I +KLRE GI FETDN
Sbjct: 211 QLLAIALDAGAEDVIEPPIYEDDADEDKSESYYKVVSSSENYMEILSKLREEGIDFETDN 270

Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
           GSELLPITTIEVDDEAM+LNKELI+KLLELDDVDAVYTDQ
Sbjct: 271 GSELLPITTIEVDDEAMDLNKELISKLLELDDVDAVYTDQ 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429934|ref|XP_002283851.1| PREDICTED: UPF0082 protein At2g25830 [Vitis vinifera] gi|296081846|emb|CBI20851.3| unnamed protein product [Vitis vinifera]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 174/220 (79%), Positives = 199/220 (90%)

Query: 14  KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
           K  +  VK+ GPNP SNT+LAAVLEKAKELDVPK+IVERNIKRASEKGQEA+IEK YEVY
Sbjct: 99  KEVVSAVKRDGPNPKSNTILAAVLEKAKELDVPKEIVERNIKRASEKGQEAYIEKFYEVY 158

Query: 74  GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
           G+GGVS+++EVLTDKI RSVAAVREV+KDCGGKMADPGSVMFKFRRARVVN+K ++ADKD
Sbjct: 159 GFGGVSMIIEVLTDKINRSVAAVREVMKDCGGKMADPGSVMFKFRRARVVNVKASEADKD 218

Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
           QLL IALD GAEDVIEPPV EDD +EDR+E YYK+V++++NY+ I  KLRE GI FETDN
Sbjct: 219 QLLTIALDTGAEDVIEPPVYEDDAEEDRSESYYKIVTSAENYSAILEKLREEGINFETDN 278

Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
           G E+LPITTIEVDDEAM+LNKEL++KLLELDDVDAVY DQ
Sbjct: 279 GFEMLPITTIEVDDEAMDLNKELMSKLLELDDVDAVYMDQ 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089014|ref|XP_002308602.1| predicted protein [Populus trichocarpa] gi|222854578|gb|EEE92125.1| predicted protein [Populus trichocarpa]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/220 (80%), Positives = 194/220 (88%)

Query: 14  KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
           K  +  VKKGGPNP SNT LAA+++K KELDVPK+I+ERNIKRASEKGQEAFIEK+YEVY
Sbjct: 72  KEVVSAVKKGGPNPESNTALAALIDKFKELDVPKEILERNIKRASEKGQEAFIEKIYEVY 131

Query: 74  GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
           G GGVSIVVEV TDKI RSVA +REVVKD GGKMADPGSV+FKFRRARVVNIK TDAD+D
Sbjct: 132 GLGGVSIVVEVSTDKIKRSVAVIREVVKDYGGKMADPGSVLFKFRRARVVNIKVTDADRD 191

Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
           QLL IALDAGAEDVIEPP  EDD+DEDR+E YYKVVS ++NY  I +KLR  GI FETDN
Sbjct: 192 QLLGIALDAGAEDVIEPPTYEDDSDEDRSESYYKVVSPAENYAAILSKLRNEGISFETDN 251

Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
           GSELLPIT IEVDDEA+ELNK L++KLLELDDVDAVYTDQ
Sbjct: 252 GSELLPITPIEVDDEAVELNKVLMSKLLELDDVDAVYTDQ 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825653|ref|XP_002880709.1| hypothetical protein ARALYDRAFT_320374 [Arabidopsis lyrata subsp. lyrata] gi|297326548|gb|EFH56968.1| hypothetical protein ARALYDRAFT_320374 [Arabidopsis lyrata subsp. lyrata]

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/214 (82%), Positives = 195/214 (91%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
           VKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGGVS
Sbjct: 113 VKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGGVS 172

Query: 80  IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
           +VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKFRR RVVNIK T+ADKDQLL+IA
Sbjct: 173 MVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFRRVRVVNIKVTEADKDQLLNIA 232

Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
           LDAGAEDVIEPP  EDDTDEDR ERYYK+V++S+NY+ I +KLR+ G+ FE DNGSELLP
Sbjct: 233 LDAGAEDVIEPPTYEDDTDEDREERYYKIVTSSENYSTILSKLRDEGVNFEPDNGSELLP 292

Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
           +TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct: 293 LTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 326

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515613|ref|XP_003526493.1| PREDICTED: UPF0082 protein At2g25830-like isoform 2 [Glycine max]

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 172/222 (77%), Positives = 194/222 (87%), Gaps = 8/222 (3%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
           VK+GGPN TSN+VLAAVLEKAKELDVPKDIVERN+KRASEKGQEA+IEKVYEVYGYGGVS
Sbjct: 84  VKRGGPNVTSNSVLAAVLEKAKELDVPKDIVERNMKRASEKGQEAYIEKVYEVYGYGGVS 143

Query: 80  IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
           +VVEV TDKI RSVA +REV+KD GGKMAD GSV FKF+R RVVNIK T+ADKDQLL IA
Sbjct: 144 MVVEVSTDKIHRSVAKIREVIKDYGGKMADSGSVTFKFKRVRVVNIKATNADKDQLLAIA 203

Query: 140 LDAGAEDVIEPPVNEDDTDEDRAE--------RYYKVVSTSDNYTDITTKLREAGIPFET 191
           LDAGAEDVI+PP  EDDT+EDR++        RYYK+V +S+NY+ I +KLRE GI FE 
Sbjct: 204 LDAGAEDVIDPPTYEDDTEEDRSDKFILFHFVRYYKIVGSSENYSSILSKLREEGIDFEP 263

Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
           DNGSELLP T +EVDDEAM+LNKEL++KLLELDDVDAVYTDQ
Sbjct: 264 DNGSELLPNTPVEVDDEAMDLNKELMSKLLELDDVDAVYTDQ 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515611|ref|XP_003526492.1| PREDICTED: UPF0082 protein At2g25830-like isoform 1 [Glycine max]

 Score =  338 bits (868), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 171/214 (79%), Positives = 191/214 (89%), Gaps = 3/214 (1%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
           VK+GGPN TSN+VLAAVLEKAKELDVPKDIVERN+KRASEKGQEA+IEKVYEVYGYGGVS
Sbjct: 84  VKRGGPNVTSNSVLAAVLEKAKELDVPKDIVERNMKRASEKGQEAYIEKVYEVYGYGGVS 143

Query: 80  IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
           +VVEV TDKI RSVA +REV+KD GGKMAD GSV FKF+R RVVNIK T+ADKDQLL IA
Sbjct: 144 MVVEVSTDKIHRSVAKIREVIKDYGGKMADSGSVTFKFKRVRVVNIKATNADKDQLLAIA 203

Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
           LDAGAEDVI+PP  EDDT+ED   RYYK+V +S+NY+ I +KLRE GI FE DNGSELLP
Sbjct: 204 LDAGAEDVIDPPTYEDDTEED---RYYKIVGSSENYSSILSKLREEGIDFEPDNGSELLP 260

Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
            T +EVDDEAM+LNKEL++KLLELDDVDAVYTDQ
Sbjct: 261 NTPVEVDDEAMDLNKELMSKLLELDDVDAVYTDQ 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400953|ref|NP_565610.1| YebC-related protein [Arabidopsis thaliana] gi|22096384|sp|O82314.2|U082_ARATH RecName: Full=Probable transcriptional regulatory protein At2g25830 gi|20197365|gb|AAC42247.2| expressed protein [Arabidopsis thaliana] gi|330252663|gb|AEC07757.1| YebC-related protein [Arabidopsis thaliana]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 175/214 (81%), Positives = 194/214 (90%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
           VKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGGVS
Sbjct: 117 VKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGGVS 176

Query: 80  IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
           +VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL IA
Sbjct: 177 MVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLIIA 236

Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
           LDAGAEDVIEPP  EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSELLP
Sbjct: 237 LDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSELLP 296

Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
           +TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct: 297 LTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 330

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15810383|gb|AAL07079.1| unknown protein [Arabidopsis thaliana] gi|21281203|gb|AAM45134.1| unknown protein [Arabidopsis thaliana]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 175/214 (81%), Positives = 194/214 (90%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
           VKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGGVS
Sbjct: 116 VKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGGVS 175

Query: 80  IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
           +VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL IA
Sbjct: 176 MVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLIIA 235

Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
           LDAGAEDVIEPP  EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSELLP
Sbjct: 236 LDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSELLP 295

Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
           +TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct: 296 LTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466655|ref|XP_003603612.1| hypothetical protein MTR_3g109620 [Medicago truncatula] gi|355492660|gb|AES73863.1| hypothetical protein MTR_3g109620 [Medicago truncatula]

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 172/239 (71%), Positives = 194/239 (81%), Gaps = 25/239 (10%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYE-------- 71
           VKKGGPN TSN+ LAAVLEK KELDVPKDIVERNIK+A+EKGQE +IEK+YE        
Sbjct: 107 VKKGGPNVTSNSALAAVLEKVKELDVPKDIVERNIKKATEKGQEDYIEKIYEGNQLCLVN 166

Query: 72  -----------------VYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 114
                            VYGYGGVS+VVEV TDKITRSVA +REV+KD GGKMAD GSV+
Sbjct: 167 VLGYKIGYGTGPATPEWVYGYGGVSMVVEVSTDKITRSVAKIREVIKDYGGKMADSGSVL 226

Query: 115 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 174
           FKFRRARVV+IK T+ADKD LL IALDAGAEDVI+PP  EDDT+EDR+ERYYK+V +S+N
Sbjct: 227 FKFRRARVVSIKVTNADKDHLLGIALDAGAEDVIDPPTYEDDTEEDRSERYYKIVGSSEN 286

Query: 175 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
           Y+ I +KLRE GI FE DNGSELLP TTIEVDDEAM+LNKEL++KLLELDDVDAVYTDQ
Sbjct: 287 YSSILSKLREEGIEFEPDNGSELLPNTTIEVDDEAMDLNKELMSKLLELDDVDAVYTDQ 345

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461317|ref|XP_004148388.1| PREDICTED: probable transcriptional regulatory protein At2g25830-like [Cucumis sativus]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 160/214 (74%), Positives = 190/214 (88%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
            K+GG NPTSN +L  +LEK KELD+PK+I +RNIKRASEKGQEA+IEK YEVYGYGG S
Sbjct: 106 CKRGGTNPTSNPLLTTLLEKIKELDIPKEIFDRNIKRASEKGQEAYIEKTYEVYGYGGAS 165

Query: 80  IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
           +VVEV TDK+ RSVAAVREV+KD GGKMAD GSVMFKFRRARVVN+K ++ DKDQLL+I+
Sbjct: 166 MVVEVSTDKVNRSVAAVREVLKDYGGKMADSGSVMFKFRRARVVNVKASNVDKDQLLNIS 225

Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
           LDAGAEDVIEPP  EDDT+ED++ERYYK+V++++NY+ I +KLRE  I FETD GSELLP
Sbjct: 226 LDAGAEDVIEPPEYEDDTEEDKSERYYKIVTSTENYSGILSKLREENIKFETDGGSELLP 285

Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
           +++IEVDDEAM+LNKEL+ KLLELDDVDAVYTDQ
Sbjct: 286 MSSIEVDDEAMDLNKELMDKLLELDDVDAVYTDQ 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
TAIR|locus:2043480	331	AT2G25830 [Arabidopsis thalian	0.940	0.664	0.8	1.2e-90
UNIPROTKB|P62036	247	GSU1074 "Probable transcriptio	0.846	0.801	0.342	1.4e-25
TIGR_CMR|GSU_1074	247	GSU_1074 "conserved hypothetic	0.846	0.801	0.342	1.4e-25
UNIPROTKB|Q609L3	248	MCA1220 "Probable transcriptio	0.850	0.802	0.338	7.6e-25
UNIPROTKB|Q4K7D6	248	PFL_4766 "Probable transcripti	0.846	0.798	0.341	6.8e-24
UNIPROTKB|Q3Z9B1	251	DET0444 "Probable transcriptio	0.837	0.780	0.319	7.8e-23
TIGR_CMR|DET_0444	251	DET_0444 "conserved hypothetic	0.837	0.780	0.319	7.8e-23
UNIPROTKB|Q723U1	239	LMOf2365_0385 "Probable transc	0.884	0.866	0.318	4.3e-22
UNIPROTKB|Q8EEF0	248	SO_2432 "Probable transcriptio	0.837	0.790	0.356	4.3e-22
TIGR_CMR|SO_2432	248	SO_2432 "conserved hypothetica	0.837	0.790	0.356	4.3e-22

TAIR|locus:2043480 AT2G25830 [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 176/220 (80%), Positives = 196/220 (89%)

Query:    14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
             K  +  VKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVY
Sbjct:   111 KEVVSAVKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVY 170

Query:    74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
             GYGGVS+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKD
Sbjct:   171 GYGGVSMVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKD 230

Query:   134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
             QLL IALDAGAEDVIEPP  EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DN
Sbjct:   231 QLLIIALDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDN 290

Query:   194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
             GSELLP+TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct:   291 GSELLPLTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 330

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0042819 "vitamin B6 biosynthetic process" evidence=RCA

UNIPROTKB|P62036 GSU1074 "Probable transcriptional regulatory protein GSU1074" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 73/213 (34%), Positives = 119/213 (55%)

Query:    21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
             K GG +P  N  L A ++KAK  ++PKD +ER IK+ + E    ++ E +YE YG GGV+
Sbjct:    37 KIGGGDPNGNPRLRAAVDKAKAENMPKDNIERAIKKGTGELEGVSYEEIIYEGYGPGGVA 96

Query:    80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
             ++VE +TD   R+V  VR     C G M + G V + F +  ++ +   D D ++L + A
Sbjct:    97 VLVECMTDNRNRTVGEVRSTFTKCNGNMGEAGCVSWMFDKKGLIVLS-KDVDFEKLFETA 155

Query:   140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
             L+AGA+DV          DE   E  Y+V++    + D+   L +AG PFE+   + ++P
Sbjct:   156 LEAGADDV---------ADE---EEQYEVLTDPAAFIDVREALEKAGFPFESAEIT-MIP 202

Query:   200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
              T +++D +  E   +L+ +L + DDV  VY +
Sbjct:   203 QTMVKLDGKNAENMLKLMDRLEDNDDVQNVYAN 235

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1074 GSU_1074 "conserved hypothetical protein TIGR01033" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 73/213 (34%), Positives = 119/213 (55%)

Query:    21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
             K GG +P  N  L A ++KAK  ++PKD +ER IK+ + E    ++ E +YE YG GGV+
Sbjct:    37 KIGGGDPNGNPRLRAAVDKAKAENMPKDNIERAIKKGTGELEGVSYEEIIYEGYGPGGVA 96

Query:    80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
             ++VE +TD   R+V  VR     C G M + G V + F +  ++ +   D D ++L + A
Sbjct:    97 VLVECMTDNRNRTVGEVRSTFTKCNGNMGEAGCVSWMFDKKGLIVLS-KDVDFEKLFETA 155

Query:   140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
             L+AGA+DV          DE   E  Y+V++    + D+   L +AG PFE+   + ++P
Sbjct:   156 LEAGADDV---------ADE---EEQYEVLTDPAAFIDVREALEKAGFPFESAEIT-MIP 202

Query:   200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
              T +++D +  E   +L+ +L + DDV  VY +
Sbjct:   203 QTMVKLDGKNAENMLKLMDRLEDNDDVQNVYAN 235

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q609L3 MCA1220 "Probable transcriptional regulatory protein MCA1220" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 72/213 (33%), Positives = 118/213 (55%)

Query:    21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVS 79
             + GGP+P +N  L   ++KA   ++ KD +ER IK+ S        E+V YE YG GG++
Sbjct:    37 RTGGPDPGNNPRLRTAIDKALVANMSKDTIERAIKKGSGAADGDNYEEVRYEGYGPGGIA 96

Query:    80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
             ++V+ LTD   R+VA VR      GG +   GSV + F +  VV+    D  +D++++ A
Sbjct:    97 VLVDCLTDNRNRTVAEVRHAFSKAGGNLGTDGSVAYLFSKTGVVSFS-ADLGEDRVMEPA 155

Query:   140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
             LDAGA+DV+   VNED + +        V++  D +  +   L  AG+  E+   + +  
Sbjct:   156 LDAGADDVV---VNEDGSVD--------VLTAPDQFEAVRDALEAAGLTPESAEVT-MRA 203

Query:   200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
              T++++D E  E    L+ +L +LDDV  VY++
Sbjct:   204 STSVKLDKEDAEKMIRLLERLEDLDDVQNVYSN 236

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q4K7D6 PFL_4766 "Probable transcriptional regulatory protein PFL_4766" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 73/214 (34%), Positives = 113/214 (52%)

Query:    21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
             ++GG +P SN  L   L+KA   ++ +DI++R I R +   G +  +E  YE YG  GV+
Sbjct:    37 RQGGGDPNSNPRLRLALDKALGANMSRDIIDRAIARGTGAAGSDDVVELTYEGYGPNGVA 96

Query:    80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLDI 138
             ++VE +TD   R+ AAVR     CGG +   GSV + F R     I F +  D+D L++ 
Sbjct:    97 VMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYLFERKG--QITFAEGVDEDALMEA 154

Query:   139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
             A++A A+DV+    NED + +        V ++   +  +   L  AG     D    +L
Sbjct:   155 AMEADADDVVS---NEDGSID--------VFTSFAGFYGVRNALEAAGFT-AADAEIVML 202

Query:   199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
             P T+ E+D E  E   +LI  L +LDDV  VY++
Sbjct:   203 PTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSN 236

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z9B1 DET0444 "Probable transcriptional regulatory protein DET0444" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 67/210 (31%), Positives = 114/210 (54%)

Query:    21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVS 79
             K+GGP+P  N  L   ++KAK+  +P D +ER IK+ S + + A  IE + E YG GGV+
Sbjct:    37 KQGGPSPEGNARLRLAIQKAKDNRMPSDNIERAIKKGSGELEGATVIEIILEGYGPGGVA 96

Query:    80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
             ++V  ++D   R+V+ VR +    GG +A+ G+V + F    V+ ++    D D+L   A
Sbjct:    97 VLVNGMSDNRNRTVSDVRHMFSKSGGSLAESGAVSWIFETKGVIGVETVGLDTDELSLKA 156

Query:   140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
             +D GAEDV        + +ED    Y ++ +   +   +  +L   G+  ++     ++P
Sbjct:   157 IDMGAEDV--------NIEED----YMEIYTAMPDMEKVRQQLEAQGVTVDSAE-INMIP 203

Query:   200 ITTIEVDDEAMELNKELIAKLLELDDVDAV 229
               T+++D+E      +L+ KL ELDDV  V
Sbjct:   204 KNTVKLDEETSLQVLKLLDKLEELDDVQTV 233

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0444 DET_0444 "conserved hypothetical protein TIGR01033" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 67/210 (31%), Positives = 114/210 (54%)

Query:    21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVS 79
             K+GGP+P  N  L   ++KAK+  +P D +ER IK+ S + + A  IE + E YG GGV+
Sbjct:    37 KQGGPSPEGNARLRLAIQKAKDNRMPSDNIERAIKKGSGELEGATVIEIILEGYGPGGVA 96

Query:    80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
             ++V  ++D   R+V+ VR +    GG +A+ G+V + F    V+ ++    D D+L   A
Sbjct:    97 VLVNGMSDNRNRTVSDVRHMFSKSGGSLAESGAVSWIFETKGVIGVETVGLDTDELSLKA 156

Query:   140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
             +D GAEDV        + +ED    Y ++ +   +   +  +L   G+  ++     ++P
Sbjct:   157 IDMGAEDV--------NIEED----YMEIYTAMPDMEKVRQQLEAQGVTVDSAE-INMIP 203

Query:   200 ITTIEVDDEAMELNKELIAKLLELDDVDAV 229
               T+++D+E      +L+ KL ELDDV  V
Sbjct:   204 KNTVKLDEETSLQVLKLLDKLEELDDVQTV 233

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q723U1 LMOf2365_0385 "Probable transcriptional regulatory protein LMOf2365_0385" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 70/220 (31%), Positives = 114/220 (51%)

Query:    11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
             +G + Y+   K G P+P +N  L  V+E+AK  +VPK I++R I++A   G E + E  Y
Sbjct:    26 FGIEIYVA-AKSGDPDPHANQKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRY 84

Query:    71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
             E +G  G  I+V+ LT+ + R+ + VR      GG M   GSV + F    +  ++  DA
Sbjct:    85 EGFGPNGSMIIVDALTNNVNRTASDVRAAYSKNGGNMGVSGSVAYMFDNTAIFGVEGKDA 144

Query:   131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
             D  +LL++ ++    DV       D  DED     Y   +  +++  +   L+ AGI   
Sbjct:   145 D--ELLELLMEVDI-DV------RDILDEDGQAIIY---AEPEDFHKVQEGLKAAGIEEF 192

Query:   191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
             T    E++P   I++  E +E  ++LI  L +L+DV  VY
Sbjct:   193 TVAEIEMIPQNDIQLSGEDLEKFEKLIDALEDLEDVQKVY 232

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EEF0 SO_2432 "Probable transcriptional regulatory protein SO_2432" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:    19 NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASE-KGQEAFIEKV-YEVYGY 75
             + ++GG +P SN  L   ++KA   ++ +D +ER IKR A E +GQ+  +E + YE YG 
Sbjct:    35 SAREGGSDPDSNPRLRIAIDKALGGNMTRDTIERAIKRGAGELEGQQ--LETIIYEGYGP 92

Query:    76 GGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQL 135
             GG +++VE +TD   R+V+ VR      GG +   GSV + F +  V++      D+D L
Sbjct:    93 GGTAVMVETMTDNRNRTVSGVRNAFSKSGGNLGTDGSVAYLFTKRGVLSYA-PGTDEDAL 151

Query:   136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
             +D AL+AGAEDV    V+ DD   D       V +    + ++   L  AG  F +DN  
Sbjct:   152 MDAALEAGAEDV----VSYDDGAID-------VFTEPTAFYEVKDALDAAG--FVSDNAE 198

Query:   196 -ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
               ++  T  E+D E  E    LI  L E DDV  VY
Sbjct:   199 IAMIASTKAELDAETAEKFMRLIDTLEEHDDVQEVY 234

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_2432 SO_2432 "conserved hypothetical protein TIGR01033" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:    19 NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASE-KGQEAFIEKV-YEVYGY 75
             + ++GG +P SN  L   ++KA   ++ +D +ER IKR A E +GQ+  +E + YE YG 
Sbjct:    35 SAREGGSDPDSNPRLRIAIDKALGGNMTRDTIERAIKRGAGELEGQQ--LETIIYEGYGP 92

Query:    76 GGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQL 135
             GG +++VE +TD   R+V+ VR      GG +   GSV + F +  V++      D+D L
Sbjct:    93 GGTAVMVETMTDNRNRTVSGVRNAFSKSGGNLGTDGSVAYLFTKRGVLSYA-PGTDEDAL 151

Query:   136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
             +D AL+AGAEDV    V+ DD   D       V +    + ++   L  AG  F +DN  
Sbjct:   152 MDAALEAGAEDV----VSYDDGAID-------VFTEPTAFYEVKDALDAAG--FVSDNAE 198

Query:   196 -ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
               ++  T  E+D E  E    LI  L E DDV  VY
Sbjct:   199 IAMIASTKAELDAETAEKFMRLIDTLEEHDDVQEVY 234

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5L6U7	Y166_CHLAB	No assigned EC number	0.3242	0.8846	0.8697	yes	no
B0BC95	Y713_CHLTB	No assigned EC number	0.3242	0.8846	0.8697	yes	no
B3WD20	Y1186_LACCB	No assigned EC number	0.3271	0.8504	0.8189	yes	no
Q9Z7Y0	Y573_CHLPN	No assigned EC number	0.3333	0.8846	0.8697	yes	no
Q0VRK0	Y750_ALCBS	No assigned EC number	0.3209	0.8547	0.8097	yes	no
Q67QQ4	Y1004_SYMTH	No assigned EC number	0.3378	0.8803	0.8512	yes	no
Q6MBJ7	Y1328_PARUW	No assigned EC number	0.3438	0.8717	0.8326	yes	no
B2TML4	Y1008_CLOBB	No assigned EC number	0.3348	0.8803	0.8373	yes	no
A4TD17	Y3828_MYCGI	No assigned EC number	0.3391	0.9017	0.8406	yes	no
O84463	Y457_CHLTR	No assigned EC number	0.3196	0.8846	0.8697	yes	no
Q9PJT5	Y742_CHLMU	No assigned EC number	0.3287	0.8846	0.8697	yes	no
Q39XN9	Y743_GEOMG	No assigned EC number	0.3317	0.8504	0.8056	yes	no
Q0S1C9	Y6891_RHOSR	No assigned EC number	0.3304	0.9017	0.844	yes	no
Q4K7D6	Y4766_PSEF5	No assigned EC number	0.3248	0.9273	0.875	yes	no
B0B830	Y717_CHLT2	No assigned EC number	0.3242	0.8846	0.8697	yes	no
Q03AF5	Y1022_LACC3	No assigned EC number	0.3271	0.8504	0.8189	yes	no
Q6AFB7	Y1075_LEIXX	No assigned EC number	0.325	0.9273	0.8611	yes	no
O82314	U082_ARATH	No assigned EC number	0.8177	0.9145	0.6465	yes	no
Q2RZ66	Y2667_SALRD	No assigned EC number	0.3448	0.9145	0.8326	yes	no
Q891Z5	Y2215_CLOTE	No assigned EC number	0.3224	0.8504	0.8089	yes	no
A3DH53	Y2075_CLOTH	No assigned EC number	0.3425	0.8547	0.8264	yes	no
Q253C8	Y838_CHLFF	No assigned EC number	0.3287	0.8846	0.8697	yes	no
Q04FS7	Y768_OENOB	No assigned EC number	0.3348	0.8504	0.8291	yes	no
Q3KLP1	Y499_CHLTA	No assigned EC number	0.3242	0.8846	0.8697	yes	no
B2V2S0	Y943_CLOBA	No assigned EC number	0.3348	0.8803	0.8373	yes	no
Q838A9	Y663_ENTFA	No assigned EC number	0.3162	0.8504	0.8223	yes	no
A9WSE7	Y2002_RENSM	No assigned EC number	0.3458	0.9316	0.8685	yes	no
P62036	Y1074_GEOSL	No assigned EC number	0.3411	0.8504	0.8056	yes	no
Q824H7	Y169_CHLCV	No assigned EC number	0.3333	0.8846	0.8697	yes	no
B8FL13	Y2958_DESAA	No assigned EC number	0.3333	0.8504	0.8056	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032422001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (248 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00038605001	SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence; (468 aa)	•			•			•		0.798
	GSVIVG00024517001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (202 aa)	•						•		0.792
	GSVIVG00015405001	RecName- Full=Delta-aminolevulinic acid dehydratase; EC=4.2.1.24; (430 aa)	•						•		0.746
	GSVIVG00015180001	RecName- Full=Queuine tRNA-ribosyltransferase; EC=2.4.2.29;; Exchanges the guanine residue with [...] (367 aa)	•								0.713
	GSVIVG00028703001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (621 aa)	•								0.684
	GSVIVG00007299001	SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (431 aa)	•			•			•		0.639
	GSVIVG00000242001	SubName- Full=Chromosome chr12 scaffold_103, whole genome shotgun sequence; (461 aa)	•								0.636
	GSVIVG00027770001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (463 aa)	•						•		0.625
	GSVIVG00034397001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (293 aa)	•						•		0.605
	GSVIVG00011801001	SubName- Full=Chromosome undetermined scaffold_339, whole genome shotgun sequence; (252 aa)	•			•					0.579

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	234
pfam01709	234	pfam01709, Transcrip_reg, Transcriptional regulato	3e-64
COG0217	241	COG0217, COG0217, Uncharacterized conserved protei	1e-51
PRK00110	245	PRK00110, PRK00110, hypothetical protein; Validate	4e-50
PRK12378	235	PRK12378, PRK12378, hypothetical protein; Provisio	1e-47
TIGR01033	238	TIGR01033, TIGR01033, DNA-binding regulatory prote	2e-46

>gnl|CDD|216656 pfam01709, Transcrip_reg, Transcriptional regulator

 Score =  199 bits (508), Expect = 3e-64
 Identities = 82/213 (38%), Positives = 117/213 (54%), Gaps = 14/213 (6%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
            K GGP+P  N  L   +EKAK  ++PKD +ER IK+ S     E + E  YE YG GGV
Sbjct: 32  AKMGGPDPEGNPRLRLAIEKAKAANMPKDNIERAIKKGSGGLDGENYEEIRYEGYGPGGV 91

Query: 79  SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
           +I+VE LTD   R+ A VR      GG + + GSV + F R  V+  +    D+D+LL+ 
Sbjct: 92  AIIVECLTDNRNRTAADVRHAFSKNGGNLGETGSVSYMFDRKGVIVFEKEGVDEDELLEA 151

Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
           AL+AGAEDV E    ED +         +V++   ++  +   L EAG+  E      ++
Sbjct: 152 ALEAGAEDVEE----EDGS--------IEVITDPTDFEAVKKALEEAGLEIE-SAEITMI 198

Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
           P  T+E+D+E  E  ++LI  L +LDDV  VY 
Sbjct: 199 PQNTVELDEEDAEKLEKLIDALEDLDDVQNVYH 231

This is a family of transcriptional regulators. In mammals, it activates the transcription of mitochondrially-encoded COX1. In bacteria, it negatively regulates the quorum-sensing response regulator by binding to its promoter region. Length = 234

>gnl|CDD|223295 COG0217, COG0217, Uncharacterized conserved protein [Function unknown]

 Score =  166 bits (424), Expect = 1e-51
 Identities = 83/213 (38%), Positives = 120/213 (56%), Gaps = 14/213 (6%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
            K+GGP+P SN  L   +EKAK  ++PKD +ER IK+AS  K    + E  YE YG GGV
Sbjct: 36  AKQGGPDPESNPRLRTAIEKAKAANMPKDNIERAIKKASGGKDGANYEEIRYEGYGPGGV 95

Query: 79  SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
           +I+VE LTD   R+ + VR      GG + +PGSV + F R  V+ ++  + D+D+LL+ 
Sbjct: 96  AIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDRKGVIVVEKNEIDEDELLEA 155

Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
           A++AGAEDV E        DE   E    V +  +++  +   L  AG   E+     ++
Sbjct: 156 AIEAGAEDVEE--------DEGSIE----VYTEPEDFNKVKEALEAAGYEIESA-ELTMI 202

Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
           P  T+E+DDE  E  ++LI  L + DDV  VY 
Sbjct: 203 PQNTVELDDEDAEKLEKLIDALEDDDDVQNVYH 235

Length = 241

>gnl|CDD|234640 PRK00110, PRK00110, hypothetical protein; Validated

 Score =  163 bits (415), Expect = 4e-50
 Identities = 78/215 (36%), Positives = 118/215 (54%), Gaps = 20/215 (9%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
            K GG +P  N  L   ++KAK  ++PKD +ER IK+ + E     + E  YE YG GGV
Sbjct: 36  AKLGGGDPEGNPRLRLAIDKAKAANMPKDNIERAIKKGTGELDGANYEEIRYEGYGPGGV 95

Query: 79  SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
           +I+VE LTD   R+ A VR      GG + + GSV + F R  V  I     D+D+L++ 
Sbjct: 96  AIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDRKGV--IVIEPLDEDELMEA 153

Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL- 197
           AL+AGAEDV         TD++     ++V++  +++  +   L  AG+  E+   +E+ 
Sbjct: 154 ALEAGAEDVE--------TDDE----SFEVITAPEDFEAVRDALEAAGLEAES---AEVT 198

Query: 198 -LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
            +P  T+E+D+E  E   +LI  L +LDDV  VY 
Sbjct: 199 MIPQNTVELDEETAEKLLKLIDALEDLDDVQNVYH 233

Length = 245

>gnl|CDD|237084 PRK12378, PRK12378, hypothetical protein; Provisional

 Score =  156 bits (397), Expect = 1e-47
 Identities = 75/212 (35%), Positives = 107/212 (50%), Gaps = 13/212 (6%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
            K+GGP+P SN  L  V+E+AK+ +VPKD++ER IK+A   G E + E  YE +G  GV 
Sbjct: 34  AKQGGPDPESNPALRFVIERAKKANVPKDVIERAIKKAKGGGGEDYEEVRYEGFGPNGVM 93

Query: 80  IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
           ++VE LTD + R+VA VR      GG +   GSV F F    V   +  D D+     I 
Sbjct: 94  VIVECLTDNVNRTVANVRSAFNKNGGNLGTSGSVAFMFDHKGVFVFEGDDEDELLEALID 153

Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
            D   EDV E    E+ T          V +   ++  +   L  AGI F      E++P
Sbjct: 154 ADVDVEDVEE----EEGT--------ITVYTDPTDFHKVKKALEAAGIEFLVAE-LEMIP 200

Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
              +E+  E +E  ++L+  L + DDV  VY 
Sbjct: 201 QNPVELSGEDLEQFEKLLDALEDDDDVQNVYH 232

Length = 235

>gnl|CDD|233240 TIGR01033, TIGR01033, DNA-binding regulatory protein, YebC/PmpR family

 Score =  154 bits (390), Expect = 2e-46
 Identities = 76/213 (35%), Positives = 112/213 (52%), Gaps = 14/213 (6%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA-SEKGQEAFIEKVYEVYGYGGV 78
            K GG +P SN  L   +EKAK  ++PKD +ER IK+   E     + E  YE Y  GGV
Sbjct: 36  AKLGGGDPESNPRLRTAIEKAKAANMPKDNIERAIKKGAGELDGSNYEEITYEGYAPGGV 95

Query: 79  SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
           +I+VE LTD   R+ + VR      GG + +PGSV + F R  V+ +   + D++ L++ 
Sbjct: 96  AIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSRKGVIEVPKNEVDEEDLMEA 155

Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
           A++AGAED+        D D+D  E    V +  +    +   L   G P E      ++
Sbjct: 156 AIEAGAEDI--------DVDDDEFE----VYTAPEELEKVKEALEAKGFPIE-SAEITMI 202

Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
           P+TT+++DDE  E   +LI  L + DDV  VY 
Sbjct: 203 PLTTVDLDDEQAEKLLKLIDALEDDDDVQEVYH 235

This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein [Regulatory functions, DNA interactions]. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
COG0217	241	Uncharacterized conserved protein [Function unknow	100.0
PRK00110	245	hypothetical protein; Validated	100.0
PRK12378	235	hypothetical protein; Provisional	100.0
PF01709	234	Transcrip_reg: Transcriptional regulator; InterPro	100.0
TIGR01033	238	DNA-binding regulatory protein, YebC/PmpR family.	100.0
KOG2972	276	consensus Uncharacterized conserved protein [Funct	100.0
PRK07562	1220	ribonucleotide-diphosphate reductase subunit alpha	98.05
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	88.37
PF03927	79	NapD: NapD protein; InterPro: IPR005623 This entry	80.11

>COG0217 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.4e-76  Score=508.16  Aligned_cols=206  Identities=39%  Similarity=0.632  Sum_probs=197.2

Q ss_pred             hhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccC-CccceeEEEEEEEecCCcEEEEEEecCCchhh
Q 026745           14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYEVYGYGGVSIVVEVLTDKITRS   92 (234)
Q Consensus        14 keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~-~~~~~~~~~yE~~gPgGvaiIVe~~TdN~nRt   92 (234)
                      |+|++|+|+|||||++|||||.+|++||++||||++|||||+||+|. +..+|.+++|||||||||+|||||||||+|||
T Consensus        30 keI~vAaK~Gg~dP~~NprLr~aI~kAk~~nmPkd~IerAI~ka~G~~d~~~~~ei~YEGygP~GvaiiVe~LTDN~NRT  109 (241)
T COG0217          30 KEITVAAKQGGPDPESNPRLRTAIEKAKAANMPKDNIERAIKKASGGKDGANYEEIRYEGYGPGGVAIIVEALTDNRNRT  109 (241)
T ss_pred             HHHHHHHHhcCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCCccceEEEEEEeECCCceEEEEEeccCCcchh
Confidence            99999999999999999999999999999999999999999999974 45689999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCcccccCCCCCCCCccccCCceEEEEecc
Q 026745           93 VAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS  172 (234)
Q Consensus        93 ~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~~~ed~~~ed~~~~~~~~~~~p  172 (234)
                      +++||++|+|+||+|+++|||+|||+|+|+|.+..+..++|++||.|||+||+||+..            ++.|+|+|+|
T Consensus       110 as~vR~~F~K~GG~lg~~GSV~~mF~~kGvi~~~~~~~~ed~l~e~~ieagaeDv~~~------------~~~~~V~t~p  177 (241)
T COG0217         110 ASNVRSAFNKNGGNLGEPGSVSYMFDRKGVIVVEKNEIDEDELLEAAIEAGAEDVEED------------EGSIEVYTEP  177 (241)
T ss_pred             HHHHHHHHHhcCCccCCCceEEEEEeccEEEEECCCCCCHHHHHHHHHHCCchhhhcC------------CCeEEEEECh
Confidence            9999999999999999999999999999999998877899999999999999999751            2579999999


Q ss_pred             ccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCcceeecc
Q 026745          173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD  232 (234)
Q Consensus       173 ~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~N  232 (234)
                      ++|.+|+.+|++.|+++.. +++.|+|+++|++++++.+++++||++||++||||+||||
T Consensus       178 ~~~~~V~~~L~~~g~~~~~-ael~~iP~~~v~~~~e~a~k~~kLid~LEd~DDVQ~Vy~N  236 (241)
T COG0217         178 EDFNKVKEALEAAGYEIES-AELTMIPQNTVELDDEDAEKLEKLIDALEDDDDVQNVYHN  236 (241)
T ss_pred             HHHHHHHHHHHHcCCceee-eeEEEecCCceecCHHHHHHHHHHHHHHhcccchHHHHhc
Confidence            9999999999999999986 5999999999999999999999999999999999999999

>PRK00110 hypothetical protein; Validated

Probab=100.00  E-value=6e-74  Score=502.66  Aligned_cols=215  Identities=35%  Similarity=0.569  Sum_probs=199.1

Q ss_pred             chhhhhhcchh---------hhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccC-CccceeEEEEEE
Q 026745            3 RKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYEV   72 (234)
Q Consensus         3 ~~~s~~~~~~~---------keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~-~~~~~~~~~yE~   72 (234)
                      |||.|.+.+.+         |+|++|||+|||||+.|++||++|++||++||||++||||||||+|. ++.+|++++|||
T Consensus        10 Ikh~K~~~D~kksk~f~kl~reI~vAak~GG~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~~~e~~YEg   89 (245)
T PRK00110         10 IKHRKGAQDAKRGKIFTKLIREITVAAKLGGGDPEGNPRLRLAIDKAKAANMPKDNIERAIKKGTGELDGANYEEIRYEG   89 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEE
Confidence            45555555443         99999999999999999999999999999999999999999999986 556899999999


Q ss_pred             EecCCcEEEEEEecCCchhhHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCcccccCCC
Q 026745           73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPV  152 (234)
Q Consensus        73 ~gPgGvaiIVe~~TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~~  152 (234)
                      ||||||+|||||+|||+|||+++||++|+|+||+|+++|||.|+|+|+|+|.+...  ++|++||.|||+|||||+..  
T Consensus        90 ~gP~GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~kG~i~~~~~--~~d~~~e~aieaGaeDv~~e--  165 (245)
T PRK00110         90 YGPGGVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDRKGVIVIEPL--DEDELMEAALEAGAEDVETD--  165 (245)
T ss_pred             EcCCCeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEeccceEEEeCCC--CHHHHHHHHHhCCCCEeecc--
Confidence            99999999999999999999999999999999999999999999999999999743  78999999999999998531  


Q ss_pred             CCCCCccccCCceEEEEeccccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCcceeecc
Q 026745          153 NEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD  232 (234)
Q Consensus       153 ~ed~~~ed~~~~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~N  232 (234)
                             +   +.|+|+|+|++|.+|+++|++.||++.. +++.|+|+++|+|++++++++.+|+++|+++||||+||||
T Consensus       166 -------~---~~~~i~~~p~~~~~v~~~L~~~g~~~~~-sei~~~P~~~v~l~~e~~~~~~~li~~Led~dDVq~Vy~N  234 (245)
T PRK00110        166 -------D---ESFEVITAPEDFEAVRDALEAAGLEAES-AEVTMIPQNTVELDEETAEKLLKLIDALEDLDDVQNVYHN  234 (245)
T ss_pred             -------C---CeEEEEECHHHHHHHHHHHHHcCCCeee-eEEEEecCCCcccCHHHHHHHHHHHHHHhcCCCcceEeEC
Confidence                   1   3599999999999999999999999986 5999999999999999999999999999999999999999

>PRK12378 hypothetical protein; Provisional

Probab=100.00  E-value=7.4e-74  Score=499.14  Aligned_cols=207  Identities=38%  Similarity=0.594  Sum_probs=193.8

Q ss_pred             hhhhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEEEecCCcEEEEEEecCCchh
Q 026745           12 GRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITR   91 (234)
Q Consensus        12 ~~keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~~gPgGvaiIVe~~TdN~nR   91 (234)
                      ..|+|++|||+|||||+.||+||++|++||++||||++||||||||+|.++.+|++++|||||||||+|||||||||+||
T Consensus        26 l~reI~vA~k~GG~dP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~~e~~YEgygPgGvaiiVe~lTDN~nR  105 (235)
T PRK12378         26 LGKEIYVAAKQGGPDPESNPALRFVIERAKKANVPKDVIERAIKKAKGGGGEDYEEVRYEGFGPNGVMVIVECLTDNVNR  105 (235)
T ss_pred             HHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCCCceEEEEEEEEcCCCcEEEEEECCCCHHH
Confidence            33999999999999999999999999999999999999999999999875567999999999999999999999999999


Q ss_pred             hHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCC--cccccCCCCCCCCccccCCceEEEE
Q 026745           92 SVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGA--EDVIEPPVNEDDTDEDRAERYYKVV  169 (234)
Q Consensus        92 t~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GA--eDv~~~~~~ed~~~ed~~~~~~~~~  169 (234)
                      |+++||++|+|+||+|+++|||+|+|+|+|+|.+...  ++|++||.|||+||  +||..         +   ++.|+|+
T Consensus       106 t~~~vr~~f~K~gg~l~~~gsv~~~Fe~kG~i~i~~~--~~d~~~e~aieaGa~~edv~~---------~---~~~~~i~  171 (235)
T PRK12378        106 TVANVRSAFNKNGGNLGTSGSVAFMFDHKGVFVFEGD--DEDELLEALIDADVDVEDVEE---------E---EGTITVY  171 (235)
T ss_pred             HHHHHHHHHhhcCCeECCCCceeeeeecceEEEeCCC--CHHHHHHHHHhCCCCcccccc---------c---CCeEEEE
Confidence            9999999999999999999999999999999999754  79999999999988  66632         1   1369999


Q ss_pred             eccccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCcceeeccC
Q 026745          170 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ  233 (234)
Q Consensus       170 ~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~N~  233 (234)
                      |+|++|.+|+++|++.||++.+ +++.|+|+++|+|++++.+++.+|+++|+++||||+||||.
T Consensus       172 t~p~~~~~v~~~L~~~g~~~~~-sei~~~P~~~v~l~~e~~~~~~~li~~Led~dDVq~Vy~N~  234 (235)
T PRK12378        172 TDPTDFHKVKKALEAAGIEFLV-AELEMIPQNPVELSGEDLEQFEKLLDALEDDDDVQNVYHNV  234 (235)
T ss_pred             ECHHHHHHHHHHHHHcCCCcee-eEEEEecCCCccCCHHHHHHHHHHHHHHhcCCCccceeeCC
Confidence            9999999999999999999986 59999999999999999999999999999999999999994

>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins

Probab=100.00  E-value=1.2e-73  Score=498.88  Aligned_cols=206  Identities=38%  Similarity=0.636  Sum_probs=181.2

Q ss_pred             hhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccC-CccceeEEEEEEEecCCcEEEEEEecCCchhh
Q 026745           14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYEVYGYGGVSIVVEVLTDKITRS   92 (234)
Q Consensus        14 keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~-~~~~~~~~~yE~~gPgGvaiIVe~~TdN~nRt   92 (234)
                      |+|++|||+|||||+.|++||++|++||++||||++||||||||++. +..+|++++|||||||||+|||||+|||+|||
T Consensus        26 reI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~IerAIkk~~~~~~~~~~~~~~yEg~gP~Gvaiive~lTDN~nRt  105 (234)
T PF01709_consen   26 REITVAVKEGGPDPDMNPRLRSAIEKAKKANMPKDNIERAIKKASGKSDGANYEEITYEGYGPGGVAIIVECLTDNKNRT  105 (234)
T ss_dssp             HHHHHHHHCC-S-GGGSHHHHHHHHHHHHTT--HHHHHHHHHHCCSTSST---EEEEEEEEETTTEEEEEEEEES-HHHH
T ss_pred             HHHHHHHHcCCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHhcCcCCCCcCceEEEEEEEcCCCcEEEEEEeCCCHhHH
Confidence            99999999999999999999999999999999999999999999987 66789999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCcccccCCCCCCCCccccCCceEEEEecc
Q 026745           93 VAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS  172 (234)
Q Consensus        93 ~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~~~ed~~~ed~~~~~~~~~~~p  172 (234)
                      +++||++|+|+||+|+++|||+|+|+|+|+|.+++...++|++||.|||+|||||++.            ++.|+|+|+|
T Consensus       106 ~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~i~~~~~~~~~d~~~e~aIe~GaeDve~~------------d~~~~~~c~p  173 (234)
T PF01709_consen  106 VSDIRSIFKKNGGSLGPSGSVSFMFERKGVIEVSKKDLDEDELMEDAIEAGAEDVEED------------DGEFEFICDP  173 (234)
T ss_dssp             HHHHHHHHHTTT-EEE-TTSSGGGEEEEEEEEEEHCCS-HHHHHHHHHHHTESEEEEC------------TSEEEEEEEG
T ss_pred             HHHHHHHHHHcCceeCCCCcceeeeeeeEEEEEEeCCCChHHHHHHHHhCCCcEeeec------------CCeEEEEECH
Confidence            9999999999999999999999999999999998767899999999999999999741            2469999999


Q ss_pred             ccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCcceeecc
Q 026745          173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD  232 (234)
Q Consensus       173 ~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~N  232 (234)
                      ++|.+|+++|++.||++.. ++++|+|+++|+|++++++++.+|+++|+++||||+||||
T Consensus       174 ~~~~~v~~~L~~~g~~i~~-~e~~~~P~~~v~l~~e~~~~~~~lie~Lee~dDV~~Vy~N  232 (234)
T PF01709_consen  174 SDLSAVKKALEKKGYEIES-AELEYIPNNPVELSEEDAEKVEKLIEALEELDDVQNVYHN  232 (234)
T ss_dssp             GGHHHHHHHHHHTT---SE-EEEEEEESS-EE--HHHHHHHHHHHHHHHTSTTEEEEEES
T ss_pred             HHHHHHHHHHHHcCCCeeE-EEEEEeCCCCcccCHHHHHHHHHHHHHHhCCcCcceeeeC
Confidence            9999999999999999986 5999999999999999999999999999999999999999

This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.

>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family

Probab=100.00  E-value=5.6e-73  Score=495.11  Aligned_cols=209  Identities=35%  Similarity=0.594  Sum_probs=195.7

Q ss_pred             hhhhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccC-CccceeEEEEEEEecCCcEEEEEEecCCch
Q 026745           12 GRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYEVYGYGGVSIVVEVLTDKIT   90 (234)
Q Consensus        12 ~~keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~-~~~~~~~~~yE~~gPgGvaiIVe~~TdN~n   90 (234)
                      ..|+|++|||+|||||+.|++||++|++||++||||++||||||||+|. +..+|++++|||||||||+|||||||||+|
T Consensus        28 l~r~I~vA~k~GG~DP~~N~~L~~ai~~Ak~~~~Pkd~IerAIkr~~g~~~~~~~~~~~YEg~gP~GvaiiVe~lTDN~n  107 (238)
T TIGR01033        28 LIKEIIVAAKLGGGDPESNPRLRTAIEKAKAANMPKDNIERAIKKGAGELDGSNYEEITYEGYAPGGVAIIVECLTDNKN  107 (238)
T ss_pred             HHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEEcCCceEEEEEEecCCHH
Confidence            3399999999999999999999999999999999999999999999986 556899999999999999999999999999


Q ss_pred             hhHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCcccccCCCCCCCCccccCCceEEEEe
Q 026745           91 RSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS  170 (234)
Q Consensus        91 Rt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~~~ed~~~ed~~~~~~~~~~  170 (234)
                      ||+++||++|+|+||+|+++|||.|+|+|+|+|.+..+..++|++||.|||+|||||+..        ++    .|+|+|
T Consensus       108 Rt~~~ir~~f~K~gg~l~~~gsv~~~Fe~kG~i~~~~~~~~~d~~~e~aieaGAedv~~~--------~~----~~~v~~  175 (238)
T TIGR01033       108 RTASEVRSAFNKNGGSLGEPGSVSYLFSRKGVIEVPKNEVDEEDLMEAAIEAGAEDIDVD--------DD----EFEVYT  175 (238)
T ss_pred             hHHHHHHHHHHHcCCeeCCCCceeeeeecceEEEECCCCCCHHHHHHHHHhCCCceeecc--------CC----cEEEEE
Confidence            999999999999999999999999999999999998554678999999999999999531        11    299999


Q ss_pred             ccccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCcceeeccC
Q 026745          171 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ  233 (234)
Q Consensus       171 ~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~N~  233 (234)
                      +|++|.+|+++|++.||++.. +++.|+|+++|+|++++.+.+.+|+++|+++||||+||||.
T Consensus       176 ~~~~~~~v~~~L~~~g~~i~~-sei~~~P~~~v~l~~e~~~~~~~li~~Lee~dDVq~Vy~N~  237 (238)
T TIGR01033       176 APEELEKVKEALEAKGFPIES-AEITMIPLTTVDLDDEQAEKLLKLIDALEDDDDVQEVYHNF  237 (238)
T ss_pred             CHHHHHHHHHHHHHcCCCcee-eEEEEecCCCcccCHHHHHHHHHHHHHHhcCCCcceeeeCC
Confidence            999999999999999999986 59999999999999999999999999999999999999994

This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.

>KOG2972 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.3e-59  Score=404.72  Aligned_cols=223  Identities=37%  Similarity=0.538  Sum_probs=199.4

Q ss_pred             hhhhcchhhhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEEEecCCcEEEEEEe
Q 026745            6 SCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVL   85 (234)
Q Consensus         6 s~~~~~~~keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~~gPgGvaiIVe~~   85 (234)
                      |+...+..++|..|||.||+||.+|.+||++++.||+.+|||+.|||||+||+++++...+.+.||+||||||++|||++
T Consensus        50 sk~~nkl~~~i~~aVk~gg~np~lN~~LAtlle~ak~~~vpkd~ien~i~ras~k~~~a~e~~~ye~~gp~GV~liVeal  129 (276)
T KOG2972|consen   50 SKQINKLSQGIILAVKQGGANPELNMRLATLLESAKKISVPKDGIENAINRASGKEGSAVEFIEYEAMGPSGVGLIVEAL  129 (276)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHHHhccCCCCceEEEEEeeecCCceEEEEEee
Confidence            44455555999999999999999999999999999999999999999999999987777777899999999999999999


Q ss_pred             cCCchhhHHHHHHHHhhcCccccCCcceeeecceeE-EEEEeCCCCCHHHHHHHHHHCCCcccccCCCCCCCCccccCCc
Q 026745           86 TDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR-VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER  164 (234)
Q Consensus        86 TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g-~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~~~ed~~~ed~~~~  164 (234)
                      |||+||+++.||++|+|+||.+.  ++++|+|++|| ++.++++..+.|.+.-.+||+||+|+...|.-|.|+++++  .
T Consensus       130 Tdnknr~~~~iRs~~nk~GG~s~--~~~r~~FdkKG~Vv~V~~~~~dk~vL~ie~ie~~A~d~~~~~~~e~d~eeer--~  205 (276)
T KOG2972|consen  130 TDNKNRAASSIRSIFNKHGGASA--SGVRFLFDKKGVVVNVPPEKRDKDVLNIEAIEAGAEDIVAEPVLEIDEEEER--E  205 (276)
T ss_pred             eccHhHHHHHHHHHHHHcCCccc--ccceeEEeccceEEecChhhcchhhhhHHHHHhcccccccCccccccccccc--c
Confidence            99999999999999999998665  46788888888 7788877778778888889999999887665555544443  3


Q ss_pred             eEEEEeccccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCcceeeccC
Q 026745          165 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ  233 (234)
Q Consensus       165 ~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~N~  233 (234)
                      .|+|+|+|++|++|...|.+.||++.. ++++|+|.++|+++++.++++++|+++|.+++||..||+|.
T Consensus       206 ~fkiv~e~ssl~qV~~~Lr~~G~~i~d-~~le~~P~~~vev~~~~lEk~qkL~q~L~e~edV~~iy~ni  273 (276)
T KOG2972|consen  206 EFKIVTEPSSLNQVAHKLRSKGFEIKD-SGLEFIPLEEVEVDVPALEKIQKLIQALYENEDVMFIYDNI  273 (276)
T ss_pred             eeEEEeccchHHHHHHHhhcCCceeec-cccccccCCccccCccchHHHHHHHHHHhhchhHHHHhhcc
Confidence            499999999999999999999999985 69999999999999989999999999999999999999994

>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=98.05  E-value=5e-06  Score=86.59  Aligned_cols=49  Identities=22%  Similarity=0.293  Sum_probs=45.1

Q ss_pred             hhhhhHHHHhhC------CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccC
Q 026745           12 GRKSYLRNVKKG------GPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK   60 (234)
Q Consensus        12 ~~keI~~Avk~G------G~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~   60 (234)
                      ..++|..|+|.|      |+||..|++|+.+|.+||+.+||++.|+|+|+++.+.
T Consensus       317 ~lk~I~~A~~~~~G~~~~~~DP~~NpaLk~aI~~Ak~~~vP~~~I~RvI~~A~qg  371 (1220)
T PRK07562        317 HLKAIMKACVNCEGDGDDCFDPAKNPALKREIKAAKKALVPENYIKRVIQFARQG  371 (1220)
T ss_pred             HHHHHHHHHHhccccccccCCccccHHHHHHHHHHHhccCCHHHHHHHHHHhhcc
Confidence            338999999998      6899999999999999999999999999999998653

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=88.37  E-value=1.2  Score=31.04  Aligned_cols=63  Identities=19%  Similarity=0.187  Sum_probs=42.2

Q ss_pred             EEEeccccHHHHHHHHHHCCCCeeecccceeecCc----ccccCHHHHH-HHHHHHHHHccCCCcceee
Q 026745          167 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT----TIEVDDEAME-LNKELIAKLLELDDVDAVY  230 (234)
Q Consensus       167 ~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~----~V~l~~e~~~-~~~~li~~Lee~dDV~~Vy  230 (234)
                      .....|..+..+...|.+.|..+..- ...-.|..    ...+.-...+ .+.+++++|+.+++|.+|+
T Consensus         6 ~~~d~~g~l~~I~~~la~~~inI~~i-~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~   73 (76)
T cd04888           6 LLEHRPGVLSKVLNTIAQVRGNVLTI-NQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVE   73 (76)
T ss_pred             EecCCCchHHHHHHHHHHcCCCEEEE-EeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEE
Confidence            34556778999999999999987532 11001221    1223223344 7889999999999999987

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC

Probab=80.11  E-value=2.4  Score=31.02  Aligned_cols=60  Identities=15%  Similarity=0.223  Sum_probs=43.2

Q ss_pred             eEEEEeccccHHHHHHHHHH-CCCCeeecccceeecC--cccccCHHHHHHHHHHHHHHccCCCccee
Q 026745          165 YYKVVSTSDNYTDITTKLRE-AGIPFETDNGSELLPI--TTIEVDDEAMELNKELIAKLLELDDVDAV  229 (234)
Q Consensus       165 ~~~~~~~p~~~~~v~~~L~~-~g~~i~~~~~~~~iP~--~~V~l~~e~~~~~~~li~~Lee~dDV~~V  229 (234)
                      .+.|.|.|..+..|+.+|.+ .|.+|... +    +.  --|.+..+......+++++|+.+|.|..+
T Consensus         7 s~vV~~~p~~~~~v~~~l~~~~gvEVh~~-~----~~GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa   69 (79)
T PF03927_consen    7 SLVVHARPERLEEVAEALAAIPGVEVHAV-D----EDGKIVVTIEAESSEEEVDLIDAINALPGVLSA   69 (79)
T ss_dssp             EEEEEE-CCCHHHHHHHHCCSTTEEEEEE-E----TTTEEEEEEEESSHHHHHHHHHHHCCSTTEEEE
T ss_pred             EEEEEECchhHHHHHHHHHcCCCcEEEee-C----CCCeEEEEEEeCChHHHHHHHHHHHcCCCceEE
Confidence            47789999999999999998 47666432 1    22  23555555556667899999999998775

The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	234
1lfp_A	249	Crystal Structure Of A Conserved Hypothetical Prote		2e-21
1kon_A	249	Crystal Structure Of E.Coli Yebc Length = 249		5e-20
4f3q_A	247	Structure Of A Yebc Family Protein (Cbu_1566) From		4e-18
1mw7_A	240	X-Ray Structure Of Y162_helpy Northeast Structural		1e-11

>pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein Aq1575 From Aquifex Aeolicus Length = 249

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 17/213 (7%)
Query: 23  GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIV 81
           GGPNP  N  L   +E+AK+ + P + +ER IK+ A E   E F E +YE Y  GGV++ 
Sbjct: 39  GGPNPEFNPRLRTAIEQAKKANXPWENIERAIKKGAGELEGEQFEEVIYEGYAPGGVAVX 98
Query: 82  VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
           V   TD   R+ + VR V    GG +   G V + F R   + +   +  +++LL+ A++
Sbjct: 99  VLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIE 158
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
            GAEDV +P            E  + + +  +   ++   L + G+P E    +   PI+
Sbjct: 159 VGAEDV-QP-----------GEEVHIIYTVPEELYEVKENLEKLGVPIEKAQIT-WKPIS 205
Query: 202 TIEVDDE--AMELNKELIAKLLELDDVDAVYTD 232
           T++++DE  A ++ K L+  L ELDDV  V  +
Sbjct: 206 TVQINDEETAQKVIK-LLNALEELDDVQQVIAN 237

>pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc Length = 249

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 15/214 (7%)
Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
            K GG +P +N  L A ++KA   ++ +D + R I R      +A +E + YE YG GG 
Sbjct: 39  AKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGT 98
Query: 79  SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
           +I++E L+D   R+VA VR     CGG +   GSV + F +  V  I F   D+D +++ 
Sbjct: 99  AIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGV--ISFEKGDEDTIMEA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
           AL+AGAEDV    V  DD   D       V +  +    +   L  AG+  ++   S ++
Sbjct: 157 ALEAGAEDV----VTYDDGAID-------VYTAWEEMGKVRDALEAAGLKADSAEVS-MI 204
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
           P T  ++D E       LI  L + DDV  VY +
Sbjct: 205 PSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHN 238

>pdb|4F3Q|A Chain A, Structure Of A Yebc Family Protein (Cbu_1566) From Coxiella Burnetii Length = 247

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 16/212 (7%)
Query: 23  GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGVSIV 81
           GG +  SN  L AV++KA   + PKD + R IKR +  G  +  +E  YE YG  GV++ 
Sbjct: 42  GGEDIDSNPRLRAVVDKAFAANXPKDTITRAIKRGAGSGAGDNLVEVRYEGYGPSGVAVX 101
Query: 82  VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
           V+ LTD   R+VA VR     C G +   GSV + F++  ++     ++D++++ +IAL+
Sbjct: 102 VDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFP-PNSDEEKIXEIALE 160
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSELLPI 200
            GAEDV     N+D +          V +  +++  I    + A + P   +    +L  
Sbjct: 161 VGAEDVT---TNDDGS--------IDVTTLPEDFEKIRNAXKAADLNPSHAE--VTVLAS 207
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
           T + +D ++ E    L   L +LDDV  VY++
Sbjct: 208 TEVGLDKDSAEQXLRLTEXLEDLDDVQNVYSN 239

>pdb|1MW7|A Chain A, X-Ray Structure Of Y162_helpy Northeast Structural Genomics Consortium Target Pr6 Length = 240

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 28/223 (12%)
Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
            K GG  P +N  L   +  AK  ++PKD ++  IKRAS K +    E  YE     GV 
Sbjct: 34  AKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSK-EGNLSEITYEGKANFGVL 92
Query: 80  IVVEVLTDKITRSVAAVREVV-KDCGGKMADPGSVMFKFRRARVV--------NIKFTDA 130
           I++E +TD  TR++A ++    K  G  +   GS+ F F R  V         N+K +  
Sbjct: 93  IIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLE 152
Query: 131 DKDQLLDIAL-DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 189
           D    L+ AL D G E++ E     +D    R + Y      ++ +  +   + +A +  
Sbjct: 153 D----LEFALIDYGLEELEEV----EDKIIIRGD-YNSFKLLNEGFESLKLPILKASL-- 201
Query: 190 ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
                 + +  T IE++DE MEL ++L+ ++ + DDV A+YT+
Sbjct: 202 ------QRIATTPIELNDEQMELTEKLLDRIEDDDDVVALYTN 238

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	234
4f3q_A	247	Transcriptional regulatory protein CBU_1566; YEBC	3e-49
1kon_A	249	Protein YEBC, YEBC; alpha/beta, two-domains, montr	3e-49
1lfp_A	249	Hypothetical protein AQ_1575; NEW fold, thermostab	7e-48
1mw7_A	240	Hypothetical protein HP0162; structural genomics,	1e-47

>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii} Length = 247

 Score =  160 bits (408), Expect = 3e-49
 Identities = 64/213 (30%), Positives = 109/213 (51%), Gaps = 14/213 (6%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
            + GG +  SN  L AV++KA   ++PKD + R IKR +     +  +E  YE YG  GV
Sbjct: 39  ARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGSGAGDNLVEVRYEGYGPSGV 98

Query: 79  SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
           +++V+ LTD   R+VA VR     C G +   GSV + F++  ++     ++D++++++I
Sbjct: 99  AVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFP-PNSDEEKIMEI 157

Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
           AL+ GAEDV     N+D            V +  +++  I   ++ A +         +L
Sbjct: 158 ALEVGAEDVTT---NDDG--------SIDVTTLPEDFEKIRNAMKAADLNPS-HAEVTVL 205

Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
             T + +D ++ E    L   L +LDDV  VY+
Sbjct: 206 ASTEVGLDKDSAEQMLRLTEMLEDLDDVQNVYS 238

>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1 Length = 249

 Score =  160 bits (408), Expect = 3e-49
 Identities = 64/213 (30%), Positives = 97/213 (45%), Gaps = 15/213 (7%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
            K GG +P +N  L A ++KA   ++ +D + R I R             +YE YG GG 
Sbjct: 39  AKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGT 98

Query: 79  SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
           +I++E L+D   R+VA VR     CGG +   GSV + F +  V  I F   D+D +++ 
Sbjct: 99  AIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGV--ISFEKGDEDTIMEA 156

Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
           AL+AGAEDV               +    V +  +    +   L  AG+  +      ++
Sbjct: 157 ALEAGAEDV-----------VTYDDGAIDVYTAWEEMGKVRDALEAAGLKAD-SAEVSMI 204

Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
           P T  ++D E       LI  L + DDV  VY 
Sbjct: 205 PSTKADMDAETAPKLMRLIDMLEDCDDVQEVYH 237

>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1 Length = 249

 Score =  157 bits (399), Expect = 7e-48
 Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 15/214 (7%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
            + GGPNP  N  L   +E+AK+ ++P + +ER IK+ + E   E F E +YE Y  GGV
Sbjct: 36  TRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEGEQFEEVIYEGYAPGGV 95

Query: 79  SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
           +++V   TD   R+ + VR V    GG +   G V + F R   + +   +  +++LL+ 
Sbjct: 96  AVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEK 155

Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
           A++ GAEDV           E+     + + +  +   ++   L + G+P E        
Sbjct: 156 AIEVGAEDVQ--------PGEE----VHIIYTVPEELYEVKENLEKLGVPIE-KAQITWK 202

Query: 199 PITTIEVDD-EAMELNKELIAKLLELDDVDAVYT 231
           PI+T++++D E  +   +L+  L ELDDV  V  
Sbjct: 203 PISTVQINDEETAQKVIKLLNALEELDDVQQVIA 236

>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1 Length = 240

 Score =  156 bits (396), Expect = 1e-47
 Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 20/218 (9%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
            K GG  P +N  L   +  AK  ++PKD ++  IKRAS K      E  YE     GV 
Sbjct: 34  AKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKE-GNLSEITYEGKANFGVL 92

Query: 80  IVVEVLTDKITRSVAAVREVV-KDCGGKMADPGSVMFKFRRARVVNIKFTDADK-----D 133
           I++E +TD  TR++A ++    K  G  +   GS+ F F R  V      + +      +
Sbjct: 93  IIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLE 152

Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
            L    +D G E++ E         ED       +    +++  +        +P     
Sbjct: 153 DLEFALIDYGLEELEE--------VED----KIIIRGDYNSFKLLNEGFESLKLPIL-KA 199

Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
             + +  T IE++DE MEL ++L+ ++ + DDV A+YT
Sbjct: 200 SLQRIATTPIELNDEQMELTEKLLDRIEDDDDVVALYT 237

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	234
4f3q_A	247	Transcriptional regulatory protein CBU_1566; YEBC	100.0
1lfp_A	249	Hypothetical protein AQ_1575; NEW fold, thermostab	100.0
1mw7_A	240	Hypothetical protein HP0162; structural genomics,	100.0
1kon_A	249	Protein YEBC, YEBC; alpha/beta, two-domains, montr	100.0

>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}

Probab=100.00  E-value=1.6e-77  Score=523.31  Aligned_cols=217  Identities=29%  Similarity=0.509  Sum_probs=200.4

Q ss_pred             chhhhhhcchh---------hhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccC-CccceeEEEEEE
Q 026745            3 RKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYEV   72 (234)
Q Consensus         3 ~~~s~~~~~~~---------keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~-~~~~~~~~~yE~   72 (234)
                      |||+|.+++++         |+|++|||+|||||+.||+||.+|++||++||||++||||||||+|. +..+|++++|||
T Consensus        13 Ikh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~yeei~YEg   92 (247)
T 4f3q_A           13 IKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGSGAGDNLVEVRYEG   92 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHCC-----CCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCcCCceEEEEEE
Confidence            56777766554         99999999999999999999999999999999999999999999985 456899999999


Q ss_pred             EecCCcEEEEEEecCCchhhHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCcccccCCC
Q 026745           73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPV  152 (234)
Q Consensus        73 ~gPgGvaiIVe~~TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~~  152 (234)
                      ||||||+|||||||||+|||+++||++|+|+||+|+++|||+|+|+|+|+|.+.+. .++|++||.|||+||+||++.  
T Consensus        93 yGPgGvaviVe~lTDN~nRT~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~-~~~d~~~e~aieaGAeDv~~~--  169 (247)
T 4f3q_A           93 YGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPN-SDEEKIMEIALEVGAEDVTTN--  169 (247)
T ss_dssp             ECGGGCEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEECTT-CCHHHHHHHHHHHTCSEEEEC--
T ss_pred             EcCCCeEEEEEEeCCCHhHHHHHHHHHHHhcCceECCCCceeEEEeeeEEEEECCC-CCHHHHHHHHHhCCCceeeec--
Confidence            99999999999999999999999999999999999999999999999999999764 689999999999999999752  


Q ss_pred             CCCCCccccCCceEEEEeccccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCcceeecc
Q 026745          153 NEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD  232 (234)
Q Consensus       153 ~ed~~~ed~~~~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~N  232 (234)
                            +   ++.|+|+|+|++|.+|+++|++.||++.. +++.|+|+++|+|++++.+++.+|+++|+++||||+||||
T Consensus       170 ------e---dg~~~v~t~p~~~~~V~~aL~~~g~~~~~-aei~~~P~~~v~l~~e~~~~~~klid~Led~dDVq~Vy~N  239 (247)
T 4f3q_A          170 ------D---DGSIDVTTLPEDFEKIRNAMKAADLNPSH-AEVTVLASTEVGLDKDSAEQMLRLTEMLEDLDDVQNVYSN  239 (247)
T ss_dssp             ------T---TSCEEEEECGGGHHHHHHHHHHTTCCCSE-EEEEEEESSCEECCHHHHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             ------C---CceEEEEECHHHHHHHHHHHHHcCCCeeE-EEEEEecCCccccCHHHHHHHHHHHHHhhcCcCcceeeEC
Confidence                  1   24699999999999999999999999986 5999999999999999999999999999999999999999

>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1

Probab=100.00  E-value=2.3e-77  Score=522.45  Aligned_cols=218  Identities=30%  Similarity=0.509  Sum_probs=203.3

Q ss_pred             cchhhhhhcchh---------hhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccC-CccceeEEEEE
Q 026745            2 QRKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYE   71 (234)
Q Consensus         2 ~~~~s~~~~~~~---------keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~-~~~~~~~~~yE   71 (234)
                      .|||+|.+++++         |+|++|||+|||||+.||+||.+|++||++||||++||||||||+|. +..+|++++||
T Consensus         9 nIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~~~~~eei~YE   88 (249)
T 1lfp_A            9 QIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEGEQFEEVIYE   88 (249)
T ss_dssp             CSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSSSCCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCcccceEEEEEE
Confidence            356666666554         99999999999999999999999999999999999999999999986 45579999999


Q ss_pred             EEecCCcEEEEEEecCCchhhHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCcccccCC
Q 026745           72 VYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPP  151 (234)
Q Consensus        72 ~~gPgGvaiIVe~~TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~  151 (234)
                      |||||||+|||||||||+|||+++||++|+|+||+|+++|||+|+|+|+|+|.+..+..++|++||.|||+||+||++. 
T Consensus        89 gyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~mF~~kG~i~~~~~~~~ed~~le~aleaGAeDv~~e-  167 (249)
T 1lfp_A           89 GYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQPG-  167 (249)
T ss_dssp             EEETTTEEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEEEGGGSCHHHHHHHHHHHTCSEEECC-
T ss_pred             EECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEEcCCCCCHHHHHHHHHhcCCceeecC-
Confidence            9999999999999999999999999999999999999999999999999999998655789999999999999999631 


Q ss_pred             CCCCCCccccCCceEEEEeccccHHHHHHHHHHCCCCeeecccceeecCccccc-CHHHHHHHHHHHHHHccCCCcceee
Q 026745          152 VNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDDVDAVY  230 (234)
Q Consensus       152 ~~ed~~~ed~~~~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l-~~e~~~~~~~li~~Lee~dDV~~Vy  230 (234)
                                 ++.|+|+|+|++|.+|+++|++.||++.+ +++.|+|+++|+| ++++.+++.+|+++|+++||||+||
T Consensus       168 -----------~~~~~v~t~p~~~~~V~~aL~~~g~~~~~-aei~~~P~~~v~l~~~e~~~~~~klid~Led~DDVq~Vy  235 (249)
T 1lfp_A          168 -----------EEVHIIYTVPEELYEVKENLEKLGVPIEK-AQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQVI  235 (249)
T ss_dssp             -----------SSEEEEEECGGGHHHHHHHHHTTTCCCSE-EEEEEEESSCEECCCHHHHHHHHHHHHHHHTSTTEEEEE
T ss_pred             -----------CceEEEEECHHHHHHHHHHHHHcCCCeee-eeeEECCCCceecCCHHHHHHHHHHHHHHhcccChhhhh
Confidence                       25799999999999999999999999986 5999999999999 8999999999999999999999999


Q ss_pred             cc
Q 026745          231 TD  232 (234)
Q Consensus       231 ~N  232 (234)
                      ||
T Consensus       236 ~N  237 (249)
T 1lfp_A          236 AN  237 (249)
T ss_dssp             EC
T ss_pred             cC
Confidence            99

>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1

Probab=100.00  E-value=3.6e-77  Score=519.14  Aligned_cols=218  Identities=28%  Similarity=0.415  Sum_probs=195.6

Q ss_pred             cchhhhhhcchh---------hhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEE
Q 026745            2 QRKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEV   72 (234)
Q Consensus         2 ~~~~s~~~~~~~---------keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~   72 (234)
                      .|||+|.+++++         |+|++|||+|||||+.||+||.+|++||++||||++||||||||+|. ..+|++++|||
T Consensus         7 nIkh~K~~~Dakr~k~ftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~g~-~~~~eei~YEg   85 (240)
T 1mw7_A            7 YRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSK-EGNLSEITYEG   85 (240)
T ss_dssp             --------------CCHHHHHHHHHHHHHTTCSCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTST-TCCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC-CCCeEEEEEEE
Confidence            366777666554         99999999999999999999999999999999999999999999987 66799999999


Q ss_pred             EecCCcEEEEEEecCCchhhHHHHHHHHhhcC-ccccCCcceeeecceeEEEEEeC----C-CCCHHHHHHHHHHCCCcc
Q 026745           73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCG-GKMADPGSVMFKFRRARVVNIKF----T-DADKDQLLDIALDAGAED  146 (234)
Q Consensus        73 ~gPgGvaiIVe~~TdN~nRt~~~vr~~~~K~g-g~l~~~gsv~~~F~~~g~i~~~~----~-~~~~d~~~e~AIE~GAeD  146 (234)
                      ||||||+|||||||||+|||+++||++|+|+| |+|+++|||+|+|+|+|+|.+..    . +.++|++||.|||+||+|
T Consensus        86 yGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~g~G~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~ed~~le~aleaGAeD  165 (240)
T 1mw7_A           86 KANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEE  165 (240)
T ss_dssp             EETTTEEEEEEEEESCHHHHHHHHHHHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHHHHHHHGGGTEEE
T ss_pred             ECCCceEEEEEEecCCHHHHHHHHHHHHhhcCCeeeCCCCcchhhheeeeEEEEecCccccCCCCHHHHHHHHHHCCCce
Confidence            99999999999999999999999999999999 99999999999999999999975    2 368999999999999999


Q ss_pred             cccCCCCCCCCccccCCceEEEEeccccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCc
Q 026745          147 VIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV  226 (234)
Q Consensus       147 v~~~~~~ed~~~ed~~~~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV  226 (234)
                      |++         +   ++.|+|+|+|++|.+|+++|++.||++.+ +++.|+|+++|+|++++.+++.+|+++|+++|||
T Consensus       166 v~~---------e---~~~~~v~t~p~~~~~V~~aL~~~g~~~~~-aei~~~P~~~v~l~~e~~~~~~klid~Led~DDV  232 (240)
T 1mw7_A          166 LEE---------V---EDKIIIRGDYNSFKLLNEGFESLKLPILK-ASLQRIATTPIELNDEQMELTEKLLDRIEDDDDV  232 (240)
T ss_dssp             EEE---------E---TTEEEEEEEGGGHHHHHHHHHHTTCCCSE-EEEEEEESSCBCCCHHHHHHHHHHHHHHHTSTTE
T ss_pred             eec---------C---CceEEEEECHHHHHHHHHHHHHcCCCeee-eeeEeCCCCCcccCHHHHHHHHHHHHHHhcccCc
Confidence            963         1   24799999999999999999999999986 5999999999999999999999999999999999


Q ss_pred             ceeeccC
Q 026745          227 DAVYTDQ  233 (234)
Q Consensus       227 ~~Vy~N~  233 (234)
                      |+||||-
T Consensus       233 q~Vy~N~  239 (240)
T 1mw7_A          233 VALYTNI  239 (240)
T ss_dssp             EEEEESB
T ss_pred             chhhcCC
Confidence            9999993

>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1

Probab=100.00  E-value=7.2e-77  Score=519.33  Aligned_cols=217  Identities=29%  Similarity=0.499  Sum_probs=193.3

Q ss_pred             cchhhhhhcchh---------hhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccC-CccceeEEEEE
Q 026745            2 QRKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYE   71 (234)
Q Consensus         2 ~~~~s~~~~~~~---------keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~-~~~~~~~~~yE   71 (234)
                      .|||+|.+++++         |+|++|||+|||||+.||+||.+|++||++||||++||||||||+|. +..+|++++||
T Consensus        12 nIkh~K~~~Dakr~kiftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~~~~~eei~YE   91 (249)
T 1kon_A           12 NTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYE   91 (249)
T ss_dssp             GTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC------CCCEEEEEE
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCcccCeEEEEEE
Confidence            356666666554         99999999999999999999999999999999999999999999986 45579999999


Q ss_pred             EEecCCcEEEEEEecCCchhhHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCcccccCC
Q 026745           72 VYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPP  151 (234)
Q Consensus        72 ~~gPgGvaiIVe~~TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~  151 (234)
                      |||||||+|||||||||+|||+++||++|+|+||+|+++|||+|+|+|+|+|.+.. + ++|++||.|||+||+||+.. 
T Consensus        92 gyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~~F~~kG~i~~~~-~-~ed~~le~aleaGAeDv~~~-  168 (249)
T 1kon_A           92 GYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEK-G-DEDTIMEAALEAGAEDVVTY-  168 (249)
T ss_dssp             EEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCEECCTTSSGGGEEEEEEEEESS-S-CHHHHHHHHHHHTCSEEEEC-
T ss_pred             EECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEECC-C-CHHHHHHHHHhCCCceeeec-
Confidence            99999999999999999999999999999999999999999999999999999975 3 89999999999999999731 


Q ss_pred             CCCCCCccccCCceEEEEeccccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCcceeec
Q 026745          152 VNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT  231 (234)
Q Consensus       152 ~~ed~~~ed~~~~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~  231 (234)
                             +   ++.|+|+|+|++|.+|+++|++.||++.+ +++.|+|+++|+|++++.+++.+|+++|+++||||+|||
T Consensus       169 -------e---~~~~~v~t~p~~~~~V~~aL~~~g~~~~~-aei~~~P~~~v~l~~e~~~~~~klid~Led~DDVq~Vy~  237 (249)
T 1kon_A          169 -------D---DGAIDVYTAWEEMGKVRDALEAAGLKADS-AEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYH  237 (249)
T ss_dssp             -------T---TSCEEEEEEGGGHHHHHHHHHHTTCCCSE-EEEEEEESSCCCCCTTTSHHHHHHHHHHHHSSSEEEEEE
T ss_pred             -------C---CceEEEEECHHHHHHHHHHHHHcCCCeee-eeeEECCCCceecCHHHHHHHHHHHHHHhcccChhhhhc
Confidence                   1   24699999999999999999999999986 599999999999999999999999999999999999999


Q ss_pred             c
Q 026745          232 D  232 (234)
Q Consensus       232 N  232 (234)
                      |
T Consensus       238 N  238 (249)
T 1kon_A          238 N  238 (249)
T ss_dssp             C
T ss_pred             C
Confidence            9

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	234
d1kona_	244	e.39.1.1 (A:) Hypothetical protein YebC {Escherich	1e-38
d1lfpa_	243	e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex	1e-30
d1mw7a_	220	e.39.1.1 (A:) Hypothetical protein HP0162 {Helicob	1e-29

>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]} Length = 244

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein YebC
species: Escherichia coli [TaxId: 562]

 Score =  132 bits (332), Expect = 1e-38
 Identities = 62/213 (29%), Positives = 97/213 (45%), Gaps = 15/213 (7%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
            K GG +P +N  L A ++KA   ++ +D + R I R      +A     +YE YG GG 
Sbjct: 34  AKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGT 93

Query: 79  SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
           +I++E L+D   R+VA VR     CGG +   GSV   +  ++   I F   D+D +++ 
Sbjct: 94  AIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSV--AYLFSKKGVISFEKGDEDTIMEA 151

Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
           AL+AGA       V   D           V +  +    +   L  AG+  ++     ++
Sbjct: 152 ALEAGA-----EDVVTYDDG------AIDVYTAWEEMGKVRDALEAAGLKADSA-EVSMI 199

Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
           P T  ++D E       LI  L + DDV  VY 
Sbjct: 200 PSTKADMDAETAPKLMRLIDMLEDCDDVQEVYH 232

>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]} Length = 243

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein aq1575
species: Aquifex aeolicus [TaxId: 63363]

 Score =  111 bits (278), Expect = 1e-30
 Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 15/214 (7%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
            + GGPNP  N  L   +E+AK+ ++P + +ER IK+ + + +    E+V YE Y  GGV
Sbjct: 32  TRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEGEQFEEVIYEGYAPGGV 91

Query: 79  SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
           +++V   TD   R+ + VR V    GG +   G V + F R   + +   +  +++LL+ 
Sbjct: 92  AVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEK 151

Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
           A++                D    E  + + +  +   ++   L + G+P E        
Sbjct: 152 AIEV------------GAEDVQPGEEVHIIYTVPEELYEVKENLEKLGVPIEKA-QITWK 198

Query: 199 PITTIEVDD-EAMELNKELIAKLLELDDVDAVYT 231
           PI+T++++D E  +   +L+  L ELDDV  V  
Sbjct: 199 PISTVQINDEETAQKVIKLLNALEELDDVQQVIA 232

>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]} Length = 220

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein HP0162
species: Helicobacter pylori [TaxId: 210]

 Score =  107 bits (269), Expect = 1e-29
 Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 12/214 (5%)

Query: 20  VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
            K GG  P +N  L   +  AK  ++PKD ++  IKRAS K      E  YE     GV 
Sbjct: 14  AKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKE-GNLSEITYEGKANFGVL 72

Query: 80  IVVEVLTDKITRSVAAVREVVKDC-GGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
           I++E +TD  TR++A ++       G  +   GS+ F F R  V      + +  +L   
Sbjct: 73  IIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLE 132

Query: 139 ALDAGAEDV-IEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
            L+    D  +E     +D    R +           +  +        +P       + 
Sbjct: 133 DLEFALIDYGLEELEEVEDKIIIRGDYNS--------FKLLNEGFESLKLPILKA-SLQR 183

Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
           +  T IE++DE MEL ++L+ ++ + DDV A+YT
Sbjct: 184 IATTPIELNDEQMELTEKLLDRIEDDDDVVALYT 217

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	234
d1mw7a_	220	Hypothetical protein HP0162 {Helicobacter pylori [	100.0
d1lfpa_	243	Hypothetical protein aq1575 {Aquifex aeolicus [Tax	100.0
d1kona_	244	Hypothetical protein YebC {Escherichia coli [TaxId	100.0

>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]}

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein HP0162
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=3.6e-73  Score=488.79  Aligned_cols=208  Identities=28%  Similarity=0.403  Sum_probs=193.6

Q ss_pred             hhhhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEEEecCCcEEEEEEecCCchh
Q 026745           12 GRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITR   91 (234)
Q Consensus        12 ~~keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~~gPgGvaiIVe~~TdN~nR   91 (234)
                      ..|+|++|||+|||||++|||||+||++||++||||++||||||||++++ ++|.+++|||||||||+|||||||||+||
T Consensus         6 l~reI~vAak~GG~Dp~~N~~L~~ai~~Ak~~nmPkd~IerAIkk~~~~~-~~~~e~~YEg~gp~gvaiiVe~lTDN~nR   84 (220)
T d1mw7a_           6 LAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKE-GNLSEITYEGKANFGVLIIMECMTDNPTR   84 (220)
T ss_dssp             HHHHHHHHHHTTCSCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTSTT-CCCEEEEEEEEETTTEEEEEEEEESCHHH
T ss_pred             HHHHHHHHHHcCCCCcccCHHHHHHHHHHHHhCCCccHHHHHHHhhcccC-CCceEEEEEEecCCceEEEEEEecCchhh
Confidence            34999999999999999999999999999999999999999999998754 47999999999999999999999999999


Q ss_pred             hHHHHHHHHhhc-CccccCCcceeeecceeEEEEEeCC-----CCCHHHHHHHHHHCCCcccccCCCCCCCCccccCCce
Q 026745           92 SVAAVREVVKDC-GGKMADPGSVMFKFRRARVVNIKFT-----DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY  165 (234)
Q Consensus        92 t~~~vr~~~~K~-gg~l~~~gsv~~~F~~~g~i~~~~~-----~~~~d~~~e~AIE~GAeDv~~~~~~ed~~~ed~~~~~  165 (234)
                      |+++||++|+|+ ||+|+++|||+|+|+|+|+|.+..+     ..++|++++.|||+||+||+..            ++.
T Consensus        85 t~~~vr~~f~K~~Gg~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~~d~~~~~aie~GaeDve~~------------ed~  152 (220)
T d1mw7a_          85 TIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEEV------------EDK  152 (220)
T ss_dssp             HHHHHHHHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHHHHHHHGGGTEEEEEEE------------TTE
T ss_pred             HHHHHHHHHhhcccccccCCCcchhhheeeeeeeecCCccchhhcchhhhhHHhhhccccccccc------------CCc
Confidence            999999999996 8899999999999999999988653     3568999999999999999752            136


Q ss_pred             EEEEeccccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCcceeeccC
Q 026745          166 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ  233 (234)
Q Consensus       166 ~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~N~  233 (234)
                      ++|+|+|++|..|+++|++.|+.+.. +++.|+|+++|+|++++++++.+|+++|+++||||+||||-
T Consensus       153 ~~i~t~~~~~~~v~~aL~~~~~~~~~-aei~~~p~~~v~l~~e~~~~~~kLid~LEd~DDVq~Vy~N~  219 (220)
T d1mw7a_         153 IIIRGDYNSFKLLNEGFESLKLPILK-ASLQRIATTPIELNDEQMELTEKLLDRIEDDDDVVALYTNI  219 (220)
T ss_dssp             EEEEEEGGGHHHHHHHHHHTTCCCSE-EEEEEEESSCBCCCHHHHHHHHHHHHHHHTSTTEEEEEESB
T ss_pred             ceeecchhhhhhhhHHHHhhccccce-eeEEEecCCceecCHHHHHHHHHHHHHHhcccCcceeeeCC
Confidence            89999999999999999999999986 49999999999999999999999999999999999999993

>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]}

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein aq1575
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=8.9e-73  Score=492.81  Aligned_cols=213  Identities=30%  Similarity=0.504  Sum_probs=197.2

Q ss_pred             hhhcchhhhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccC-CccceeEEEEEEEecCCcEEEEEEe
Q 026745            7 CIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYEVYGYGGVSIVVEVL   85 (234)
Q Consensus         7 ~~~~~~~keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~-~~~~~~~~~yE~~gPgGvaiIVe~~   85 (234)
                      +......|+|++|||+|||||+.||+||+||++||++||||++||||||||+|. ...+|++++|||||||||+|||||+
T Consensus        19 k~f~k~~r~I~~A~k~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~~~~~~yEg~gP~GvaiiVe~l   98 (243)
T d1lfpa_          19 KLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEGEQFEEVIYEGYAPGGVAVMVLAT   98 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSSSCCCEEEEEEEEETTTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHcCCcHHHHHHHHHhcccccccccceEEEEEEEecCCcEEEEEEe
Confidence            333344499999999999999999999999999999999999999999999985 4467899999999999999999999


Q ss_pred             cCCchhhHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCcccccCCCCCCCCccccCCce
Q 026745           86 TDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY  165 (234)
Q Consensus        86 TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~~~ed~~~ed~~~~~  165 (234)
                      |||+|||+++||++|+|+||+|+++|||+|+|+|+|+|.++.+..++|.+++.+||+||+|+++.            ++.
T Consensus        99 TDN~nRt~~~vr~~f~K~gG~l~~~GsV~~~F~~kG~i~~~~~~~~ed~l~~~~ie~gaed~e~~------------~~~  166 (243)
T d1lfpa_          99 TDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQPG------------EEV  166 (243)
T ss_dssp             ESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEEEGGGSCHHHHHHHHHHHTCSEEECC------------SSE
T ss_pred             ccchhhhHHHHHHHHHhcCCccccccceeeeecccceeccccCccchHHHHHHHhhhcccccccc------------ccc
Confidence            99999999999999999999999999999999999999998877899999999999999999752            246


Q ss_pred             EEEEeccccHHHHHHHHHHCCCCeeecccceeecCcccccCH-HHHHHHHHHHHHHccCCCcceeecc
Q 026745          166 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD  232 (234)
Q Consensus       166 ~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~-e~~~~~~~li~~Lee~dDV~~Vy~N  232 (234)
                      |.|+|+|++|.+|+++|++.||.+.. +++.|+|+++|+|++ +..+++.+|+++|+++||||+||||
T Consensus       167 ~~i~~~~~~l~~v~~~Le~~g~~i~~-sei~~~P~~~v~l~dee~~~kv~kLid~Led~DDVq~Vy~N  233 (243)
T d1lfpa_         167 HIIYTVPEELYEVKENLEKLGVPIEK-AQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQVIAN  233 (243)
T ss_dssp             EEEEECGGGHHHHHHHHHTTTCCCSE-EEEEEEESSCEECCCHHHHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             cceeccHHHHHHHHHHHHhcCCChhh-cceeEecCCceecCCHHHHHHHHHHHHHhhcccCccceeEc
Confidence            89999999999999999999999986 499999999999975 5578899999999999999999999

>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein YebC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-73  Score=496.55  Aligned_cols=207  Identities=30%  Similarity=0.518  Sum_probs=186.2

Q ss_pred             hhhhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccCC-ccceeEEEEEEEecCCcEEEEEEecCCch
Q 026745           12 GRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-QEAFIEKVYEVYGYGGVSIVVEVLTDKIT   90 (234)
Q Consensus        12 ~~keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~-~~~~~~~~yE~~gPgGvaiIVe~~TdN~n   90 (234)
                      ..|+|++|||+|||||+.|++||++|++||++||||++||||||||+|.. ..+|.+++|||||||||+|||||+|||+|
T Consensus        26 ~~k~I~~A~k~GG~DP~~N~~L~~ai~~Ak~~nmPkd~IeraIkk~~g~~~~~~~~e~~yEg~gp~gvaiiVe~lTDN~n  105 (244)
T d1kona_          26 IIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRN  105 (244)
T ss_dssp             HHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC------CCCEEEEEEEEETTTEEEEEEEEESCHH
T ss_pred             HHHHHHHHHHcCCCCCccCHHHHHHHHHHHHcCCchHHHHHHHHhccCCCCCCceEEEEEEEEcCCccEEEEEEecCcHH
Confidence            33999999999999999999999999999999999999999999998754 34789999999999999999999999999


Q ss_pred             hhHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCcccccCCCCCCCCccccCCceEEEEe
Q 026745           91 RSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS  170 (234)
Q Consensus        91 Rt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~~~ed~~~ed~~~~~~~~~~  170 (234)
                      ||+++||++|+|+||+|+++|||+|+|+|+|+|.+...  ++|++++.|||+||+||++.     +      ++.|+|+|
T Consensus       106 Rt~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~--~~d~l~e~aie~gAeDv~~~-----d------~~~~~i~~  172 (244)
T d1kona_         106 RTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKG--DEDTIMEAALEAGAEDVVTY-----D------DGAIDVYT  172 (244)
T ss_dssp             HHHHHHHHHHHTTTCEECCTTSSGGGEEEEEEEEESSS--CHHHHHHHHHHHTCSEEEEC-----T------TSCEEEEE
T ss_pred             HHHHHHHHHHHHcCCeeCCCccHhhhhheeceeccCCC--CHHHHHHHHHHhccchhccc-----C------CCceEEEe
Confidence            99999999999999999999999999999999998754  78999999999999999753     1      24689999


Q ss_pred             ccccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCcceeecc
Q 026745          171 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD  232 (234)
Q Consensus       171 ~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~N  232 (234)
                      +|++|.+|+++|++.||.+.. +++.|+|+++|+|++++.+++.+|++.|+++||||+||||
T Consensus       173 ~~~dl~~v~~~Le~~g~~~~~-aei~~~P~~~v~l~~e~~~k~~kLid~Led~DDVq~Vy~N  233 (244)
T d1kona_         173 AWEEMGKVRDALEAAGLKADS-AEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHN  233 (244)
T ss_dssp             EGGGHHHHHHHHHHTTCCCSE-EEEEEEESSCCCCCTTTSHHHHHHHHHHHHSSSEEEEEEC
T ss_pred             cchhHHHHHHHHHhcCCCcee-eeEEEEeCCccccCHHHHHHHHHHHHHHhcccCcceEEEC
Confidence            999999999999999999986 4999999999999999999999999999999999999999